Query 012490
Match_columns 462
No_of_seqs 135 out of 1249
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1np7_A DNA photolyase; protein 100.0 2.9E-55 9.8E-60 466.4 29.7 302 124-450 6-311 (489)
2 3fy4_A 6-4 photolyase; DNA rep 100.0 6.6E-56 2.3E-60 474.3 24.6 303 122-446 3-316 (537)
3 2j4d_A Cryptochrome 3, cryptoc 100.0 8.9E-55 3E-59 466.0 28.5 305 123-452 39-349 (525)
4 1owl_A Photolyase, deoxyribodi 100.0 9.2E-54 3.1E-58 454.2 28.0 294 124-447 3-302 (484)
5 3tvs_A Cryptochrome-1; circadi 100.0 4.4E-53 1.5E-57 453.1 28.6 307 122-446 2-328 (538)
6 2wq7_A RE11660P; lyase-DNA com 100.0 7.6E-53 2.6E-57 452.7 23.7 300 124-453 29-346 (543)
7 1dnp_A DNA photolyase; DNA rep 100.0 1.3E-52 4.6E-57 443.7 24.4 284 125-448 2-294 (471)
8 1u3d_A Cryptochrome 1 apoprote 100.0 9.6E-52 3.3E-56 441.2 28.4 304 120-453 8-323 (509)
9 2e0i_A 432AA long hypothetical 100.0 1.5E-50 5.2E-55 424.2 21.2 256 126-447 3-262 (440)
10 2j07_A Deoxyribodipyrimidine p 100.0 8.5E-50 2.9E-54 416.7 26.1 261 125-447 3-263 (420)
11 3umv_A Deoxyribodipyrimidine p 100.0 2E-48 6.9E-53 414.1 22.3 288 122-447 36-339 (506)
12 2xry_A Deoxyribodipyrimidine p 100.0 4.5E-48 1.5E-52 410.4 20.3 292 125-455 38-346 (482)
13 3zxs_A Cryptochrome B, rscryb; 100.0 1E-31 3.6E-36 283.6 17.8 300 126-459 17-354 (522)
14 3dlo_A Universal stress protei 89.9 2.4 8.2E-05 36.5 10.6 85 133-226 32-125 (155)
15 3fdx_A Putative filament prote 88.5 3 0.0001 34.6 10.0 90 138-227 16-115 (143)
16 3fg9_A Protein of universal st 88.5 1.9 6.6E-05 36.6 8.8 88 136-227 28-128 (156)
17 3tnj_A Universal stress protei 88.0 4.8 0.00016 33.7 10.9 121 133-253 14-145 (150)
18 3s3t_A Nucleotide-binding prot 87.6 3 0.0001 34.8 9.3 90 133-227 13-117 (146)
19 2dum_A Hypothetical protein PH 85.2 3.3 0.00011 35.7 8.5 122 133-254 13-155 (170)
20 3hgm_A Universal stress protei 84.0 8 0.00027 32.0 10.2 95 133-227 10-119 (147)
21 1tq8_A Hypothetical protein RV 80.8 3.1 0.0001 36.1 6.5 121 133-253 25-156 (163)
22 3rjz_A N-type ATP pyrophosphat 80.1 3 0.0001 39.5 6.5 97 140-251 19-120 (237)
23 2z08_A Universal stress protei 76.0 18 0.00061 29.6 9.7 90 133-227 10-108 (137)
24 3fvv_A Uncharacterized protein 73.0 15 0.00052 32.7 9.1 44 182-225 94-137 (232)
25 1jmv_A USPA, universal stress 71.6 32 0.0011 28.0 10.2 116 133-254 10-137 (141)
26 3olq_A Universal stress protei 69.9 73 0.0025 29.9 14.6 115 139-254 177-304 (319)
27 3idf_A USP-like protein; unive 69.5 32 0.0011 27.9 9.7 88 137-227 13-110 (138)
28 3mt0_A Uncharacterized protein 69.1 28 0.00095 32.6 10.4 110 139-253 155-274 (290)
29 3loq_A Universal stress protei 66.1 68 0.0023 29.8 12.5 103 133-253 178-288 (294)
30 3lwz_A 3-dehydroquinate dehydr 65.1 18 0.00063 31.7 7.3 75 184-262 33-114 (153)
31 3kip_A 3-dehydroquinase, type 64.2 21 0.00071 31.8 7.5 68 193-264 55-126 (167)
32 3u80_A 3-dehydroquinate dehydr 63.7 29 0.00098 30.4 8.3 79 183-262 29-114 (151)
33 3n8k_A 3-dehydroquinate dehydr 61.7 18 0.00063 32.3 6.7 75 184-262 54-135 (172)
34 3loq_A Universal stress protei 60.7 87 0.003 29.1 12.1 116 137-255 34-162 (294)
35 1mjh_A Protein (ATP-binding do 58.3 20 0.00068 30.2 6.4 95 133-227 13-129 (162)
36 2gm3_A Unknown protein; AT3G01 56.0 62 0.0021 27.5 9.4 73 182-254 86-162 (175)
37 1gqo_A Dehydroquinase; dehydra 54.9 67 0.0023 27.8 9.0 71 189-263 35-108 (143)
38 2uyg_A 3-dehydroquinate dehydr 54.8 81 0.0028 27.5 9.5 72 187-262 32-107 (149)
39 3n07_A 3-deoxy-D-manno-octulos 51.2 24 0.00083 31.6 6.0 53 190-248 62-114 (195)
40 1uqr_A 3-dehydroquinate dehydr 51.1 63 0.0022 28.3 8.3 72 187-262 34-108 (154)
41 1h05_A 3-dehydroquinate dehydr 49.8 71 0.0024 27.7 8.3 72 188-263 36-110 (146)
42 3mn1_A Probable YRBI family ph 49.6 27 0.00091 30.8 6.0 55 188-248 54-108 (189)
43 3h75_A Periplasmic sugar-bindi 49.2 93 0.0032 29.6 10.3 74 179-257 17-96 (350)
44 3i8o_A KH domain-containing pr 48.9 66 0.0023 27.8 8.1 87 151-254 32-131 (142)
45 3mmz_A Putative HAD family hyd 48.4 23 0.0008 30.8 5.3 54 188-248 47-100 (176)
46 1sur_A PAPS reductase; assimil 48.0 1E+02 0.0035 27.6 9.9 71 183-255 31-105 (215)
47 2p9j_A Hypothetical protein AQ 47.3 77 0.0026 26.4 8.5 57 187-249 43-99 (162)
48 3ij5_A 3-deoxy-D-manno-octulos 46.3 20 0.00069 32.6 4.7 55 188-248 84-138 (211)
49 4eze_A Haloacid dehalogenase-l 45.8 77 0.0026 30.5 9.1 44 183-226 182-225 (317)
50 2l82_A Designed protein OR32; 45.4 74 0.0025 26.3 7.4 52 199-254 5-59 (162)
51 2lnd_A De novo designed protei 45.4 35 0.0012 26.7 5.1 62 183-247 38-103 (112)
52 3qk7_A Transcriptional regulat 45.0 89 0.0031 28.8 9.2 72 179-256 23-97 (294)
53 3jy6_A Transcriptional regulat 44.5 1.4E+02 0.0047 27.1 10.4 71 179-256 20-94 (276)
54 1gtz_A 3-dehydroquinate dehydr 42.8 81 0.0028 27.7 7.7 70 189-262 41-114 (156)
55 3rfu_A Copper efflux ATPase; a 41.7 50 0.0017 36.1 7.7 60 190-254 564-623 (736)
56 3nvb_A Uncharacterized protein 41.6 76 0.0026 32.0 8.5 64 180-249 256-327 (387)
57 3n28_A Phosphoserine phosphata 41.5 99 0.0034 29.5 9.2 42 184-225 182-223 (335)
58 3olq_A Universal stress protei 41.2 2.1E+02 0.0073 26.5 11.4 121 133-257 15-152 (319)
59 2iel_A Hypothetical protein TT 40.6 1.2E+02 0.0041 26.1 8.2 71 182-252 57-132 (138)
60 3mpo_A Predicted hydrolase of 40.5 1.3E+02 0.0044 27.4 9.5 68 190-260 32-118 (279)
61 3l49_A ABC sugar (ribose) tran 40.4 1.4E+02 0.0046 27.2 9.7 73 179-256 18-95 (291)
62 2c4w_A 3-dehydroquinate dehydr 39.7 1.1E+02 0.0037 27.4 8.1 66 194-263 51-120 (176)
63 1b43_A Protein (FEN-1); nuclea 39.0 70 0.0024 31.3 7.6 41 183-223 130-170 (340)
64 2r8e_A 3-deoxy-D-manno-octulos 38.7 63 0.0022 28.1 6.7 38 189-226 62-99 (188)
65 2nyt_A Probable C->U-editing e 37.8 39 0.0013 30.6 5.1 74 178-253 67-145 (190)
66 3p96_A Phosphoserine phosphata 37.7 1.1E+02 0.0037 30.4 9.0 42 184-225 260-301 (415)
67 3m1y_A Phosphoserine phosphata 36.9 90 0.0031 26.8 7.4 41 184-224 79-119 (217)
68 3raz_A Thioredoxin-related pro 36.4 43 0.0015 27.6 5.0 45 177-222 39-83 (151)
69 3ujp_A Mn transporter subunit; 36.3 1.3E+02 0.0045 29.0 9.0 73 177-254 164-246 (307)
70 3tva_A Xylose isomerase domain 36.2 1.5E+02 0.005 27.3 9.2 69 183-251 51-156 (290)
71 3gv0_A Transcriptional regulat 35.2 1.2E+02 0.004 27.9 8.3 72 179-256 23-98 (288)
72 4gxt_A A conserved functionall 35.0 22 0.00076 35.7 3.3 46 181-226 222-273 (385)
73 4dw8_A Haloacid dehalogenase-l 34.9 2.6E+02 0.0087 25.3 10.9 68 190-260 32-119 (279)
74 1toa_A Tromp-1, protein (perip 34.7 1.2E+02 0.0041 29.3 8.5 69 181-254 175-253 (313)
75 3l6u_A ABC-type sugar transpor 34.4 2.1E+02 0.0072 25.9 10.0 73 179-256 21-98 (293)
76 3e61_A Putative transcriptiona 34.4 1.5E+02 0.0052 26.7 8.9 71 179-256 21-95 (277)
77 4fe7_A Xylose operon regulator 34.1 64 0.0022 31.8 6.6 69 179-255 37-105 (412)
78 3n1u_A Hydrolase, HAD superfam 33.9 88 0.003 27.4 6.8 37 190-226 56-92 (191)
79 3kzx_A HAD-superfamily hydrola 32.8 51 0.0018 28.9 5.1 33 186-218 109-141 (231)
80 3egc_A Putative ribose operon 32.6 1.1E+02 0.0039 27.8 7.8 72 179-256 21-96 (291)
81 3l8h_A Putative haloacid dehal 32.6 60 0.002 27.5 5.3 25 182-206 29-53 (179)
82 3mt0_A Uncharacterized protein 31.8 1.1E+02 0.0038 28.3 7.5 104 133-254 15-127 (290)
83 3sd7_A Putative phosphatase; s 31.4 81 0.0028 27.8 6.3 44 185-228 115-162 (240)
84 3lmz_A Putative sugar isomeras 30.8 1.2E+02 0.0041 27.5 7.5 64 183-251 61-130 (257)
85 1vp8_A Hypothetical protein AF 30.7 59 0.002 29.7 4.9 68 183-252 30-103 (201)
86 3k4h_A Putative transcriptiona 30.6 1.9E+02 0.0066 26.1 8.9 72 179-256 26-101 (292)
87 8abp_A L-arabinose-binding pro 30.4 2.7E+02 0.0092 25.3 10.0 73 179-256 15-91 (306)
88 2o8v_A Phosphoadenosine phosph 30.2 1.8E+02 0.0062 26.9 8.6 69 184-254 33-105 (252)
89 1k1e_A Deoxy-D-mannose-octulos 30.0 57 0.0019 28.1 4.8 37 188-224 43-79 (180)
90 3dbi_A Sugar-binding transcrip 30.0 2.8E+02 0.0097 25.8 10.3 73 179-256 76-152 (338)
91 1xvl_A Mn transporter, MNTC pr 29.9 1.8E+02 0.0063 28.1 8.9 71 179-254 180-260 (321)
92 3cis_A Uncharacterized protein 29.9 66 0.0023 30.2 5.6 88 133-226 179-275 (309)
93 3gkn_A Bacterioferritin comigr 29.8 90 0.0031 25.9 6.0 44 180-223 53-96 (163)
94 3cx3_A Lipoprotein; zinc-bindi 29.6 2E+02 0.0068 27.1 9.0 68 181-253 157-232 (284)
95 3hcw_A Maltose operon transcri 29.5 2E+02 0.0068 26.3 8.9 72 179-256 25-100 (295)
96 1nf2_A Phosphatase; structural 29.5 1.5E+02 0.005 27.2 7.9 73 185-259 25-111 (268)
97 3e8m_A Acylneuraminate cytidyl 29.4 55 0.0019 27.4 4.5 38 189-226 40-77 (164)
98 3p6l_A Sugar phosphate isomera 29.2 1.9E+02 0.0065 26.1 8.6 64 183-251 63-132 (262)
99 3huu_A Transcription regulator 29.1 1.7E+02 0.0057 27.0 8.3 73 179-257 40-116 (305)
100 3mc1_A Predicted phosphatase, 28.9 89 0.003 27.0 6.0 44 185-228 91-138 (226)
101 3v7e_A Ribosome-associated pro 28.9 73 0.0025 24.4 4.7 44 209-255 18-61 (82)
102 2pq0_A Hypothetical conserved 28.4 2.2E+02 0.0075 25.5 8.8 65 190-257 30-108 (258)
103 3o74_A Fructose transport syst 28.1 2.4E+02 0.0083 25.0 9.1 73 179-256 15-91 (272)
104 2l69_A Rossmann 2X3 fold prote 27.9 1.4E+02 0.0049 23.9 6.2 64 183-250 13-78 (134)
105 2prs_A High-affinity zinc upta 27.9 1.7E+02 0.0058 27.6 8.1 69 181-254 154-230 (284)
106 3gi1_A LBP, laminin-binding pr 27.5 1.7E+02 0.0058 27.8 8.1 70 179-253 157-234 (286)
107 3hh8_A Metal ABC transporter s 27.5 2.2E+02 0.0076 27.0 9.0 72 178-254 158-239 (294)
108 2wm8_A MDP-1, magnesium-depend 27.3 1.4E+02 0.0049 25.5 7.0 41 183-223 71-112 (187)
109 1q77_A Hypothetical protein AQ 27.1 69 0.0024 25.8 4.6 92 133-227 12-118 (138)
110 3cis_A Uncharacterized protein 26.1 2.1E+02 0.0071 26.6 8.4 130 120-256 16-162 (309)
111 3dao_A Putative phosphatse; st 25.7 2E+02 0.0067 26.5 8.1 67 191-260 50-133 (283)
112 3e3m_A Transcriptional regulat 25.7 4.2E+02 0.014 24.9 10.9 71 179-255 83-157 (355)
113 1pq4_A Periplasmic binding pro 25.6 95 0.0032 29.6 5.9 68 181-253 170-243 (291)
114 4ex6_A ALNB; modified rossman 25.5 79 0.0027 27.6 5.0 34 185-218 109-142 (237)
115 1ul1_X Flap endonuclease-1; pr 25.1 1.5E+02 0.0052 29.4 7.5 40 185-224 137-176 (379)
116 3dx5_A Uncharacterized protein 25.1 3E+02 0.01 25.0 9.3 68 183-250 48-139 (286)
117 2nyv_A Pgpase, PGP, phosphogly 25.0 1.3E+02 0.0045 26.3 6.4 29 190-218 93-121 (222)
118 3k9c_A Transcriptional regulat 24.9 2.3E+02 0.0078 25.8 8.3 70 179-256 24-97 (289)
119 1l7m_A Phosphoserine phosphata 24.8 1.8E+02 0.0061 24.5 7.1 41 184-224 80-120 (211)
120 3qc0_A Sugar isomerase; TIM ba 24.6 99 0.0034 28.1 5.6 70 182-251 44-140 (275)
121 3ixr_A Bacterioferritin comigr 24.5 99 0.0034 26.6 5.4 40 182-221 71-110 (179)
122 2yvq_A Carbamoyl-phosphate syn 24.5 1.3E+02 0.0044 25.5 5.9 44 209-252 87-130 (143)
123 3kke_A LACI family transcripti 24.5 3.1E+02 0.01 25.1 9.2 71 180-256 29-103 (303)
124 4fe3_A Cytosolic 5'-nucleotida 24.5 79 0.0027 29.7 5.0 31 188-218 149-179 (297)
125 3s6j_A Hydrolase, haloacid deh 24.4 1E+02 0.0034 26.7 5.4 35 185-219 96-130 (233)
126 2xzm_U Ribosomal protein L7AE 24.4 1.9E+02 0.0064 24.2 6.8 44 209-254 31-74 (126)
127 3nkl_A UDP-D-quinovosamine 4-d 24.0 1.5E+02 0.005 24.2 6.1 45 207-253 54-98 (141)
128 3ksm_A ABC-type sugar transpor 23.8 3E+02 0.01 24.4 8.9 73 179-256 13-93 (276)
129 1zun_A Sulfate adenylyltransfe 23.7 3.4E+02 0.012 26.2 9.6 74 180-255 31-111 (325)
130 3ab8_A Putative uncharacterize 23.5 1.8E+02 0.0061 26.3 7.2 73 181-255 72-149 (268)
131 2rgy_A Transcriptional regulat 23.5 4.1E+02 0.014 24.0 9.8 71 179-255 21-98 (290)
132 3m9l_A Hydrolase, haloacid deh 23.4 93 0.0032 26.7 5.0 34 186-219 76-109 (205)
133 3uug_A Multiple sugar-binding 23.3 4.4E+02 0.015 24.2 10.4 72 180-256 17-93 (330)
134 3j08_A COPA, copper-exporting 23.2 2E+02 0.0068 30.7 8.4 45 187-233 464-508 (645)
135 1nrw_A Hypothetical protein, h 23.1 2.4E+02 0.0081 25.9 8.1 69 191-259 32-113 (288)
136 3dnp_A Stress response protein 23.0 3E+02 0.01 25.0 8.7 70 191-260 34-116 (290)
137 2pib_A Phosphorylated carbohyd 22.9 1.2E+02 0.0042 25.5 5.6 36 184-219 88-123 (216)
138 3e58_A Putative beta-phosphogl 22.5 1.5E+02 0.0051 24.8 6.1 46 183-228 92-141 (214)
139 3rot_A ABC sugar transporter, 22.4 4.4E+02 0.015 23.9 9.9 73 179-256 16-95 (297)
140 2fep_A Catabolite control prot 22.3 4.4E+02 0.015 23.8 10.8 72 179-256 29-104 (289)
141 3drn_A Peroxiredoxin, bacterio 22.1 1.5E+02 0.0051 24.6 5.9 41 181-221 48-88 (161)
142 3fzq_A Putative hydrolase; YP_ 22.0 2E+02 0.0068 25.8 7.2 66 191-259 33-112 (274)
143 3m9w_A D-xylose-binding peripl 22.0 3E+02 0.01 25.2 8.6 72 180-256 16-92 (313)
144 3tb6_A Arabinose metabolism tr 22.0 3E+02 0.01 24.8 8.5 76 180-256 29-108 (298)
145 2izo_A FEN1, flap structure-sp 21.8 1.3E+02 0.0044 29.5 6.1 44 183-227 127-170 (346)
146 3um9_A Haloacid dehalogenase, 21.8 2E+02 0.0068 24.6 6.9 45 184-228 100-148 (230)
147 2goy_A Adenosine phosphosulfat 21.5 1.7E+02 0.0057 27.5 6.7 69 184-254 42-113 (275)
148 2q02_A Putative cytoplasmic pr 21.4 3.3E+02 0.011 24.3 8.7 68 184-251 52-137 (272)
149 3kws_A Putative sugar isomeras 21.3 2.2E+02 0.0075 26.1 7.4 45 183-227 64-126 (287)
150 2no4_A (S)-2-haloacid dehaloge 21.0 1.9E+02 0.0065 25.3 6.7 45 184-228 109-157 (240)
151 3ngf_A AP endonuclease, family 20.9 3.4E+02 0.012 24.5 8.7 42 185-226 50-114 (269)
152 2wfc_A Peroxiredoxin 5, PRDX5; 20.9 2E+02 0.0068 24.5 6.5 39 182-220 52-91 (167)
153 2ioy_A Periplasmic sugar-bindi 20.8 4.6E+02 0.016 23.5 9.7 72 179-255 14-90 (283)
154 1tp9_A Peroxiredoxin, PRX D (t 20.8 1.4E+02 0.0048 25.0 5.5 38 182-219 56-94 (162)
155 1pq4_A Periplasmic binding pro 20.7 2.9E+02 0.0099 26.1 8.2 41 185-225 226-267 (291)
156 2hsz_A Novel predicted phospha 20.6 1.4E+02 0.0048 26.6 5.7 24 193-216 127-150 (243)
157 1zrn_A L-2-haloacid dehalogena 20.5 3E+02 0.01 23.7 7.8 44 184-227 99-146 (232)
158 3uma_A Hypothetical peroxiredo 20.4 1.9E+02 0.0065 25.3 6.4 44 182-225 77-124 (184)
159 3j09_A COPA, copper-exporting 20.3 2.3E+02 0.0079 30.7 8.2 45 187-233 542-586 (723)
160 1iv0_A Hypothetical protein; r 20.3 1.2E+02 0.004 24.3 4.4 48 207-255 40-93 (98)
161 3ib6_A Uncharacterized protein 20.2 3.4E+02 0.012 23.0 8.1 47 181-227 35-88 (189)
162 3igz_B Cofactor-independent ph 20.2 3.3E+02 0.011 28.7 9.0 79 184-262 109-208 (561)
No 1
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=2.9e-55 Score=466.39 Aligned_cols=302 Identities=38% Similarity=0.716 Sum_probs=249.3
Q ss_pred CeEEEEEeCCCCccChHHHHHhhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012490 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (462)
Q Consensus 124 ~~~LvWFRrDLRl~DN~AL~~A~~~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v~~ 203 (462)
+.+|||||||||++||+||.+|++.+.+|+||||+||.++..+..|+...+.+|+.||++||++|+++|+++|++|+|+.
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~ 85 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTT 85 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 46899999999999999999999988899999999998886544455578999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCCCCCCCCCCCChhhHHHHHh
Q 012490 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283 (462)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~~~~~~~ft~F~k~~~ 283 (462)
|++.++|.+|++++++++|++|++|++++++||++|++.|++.||+++.+++++|++++++....|++|.+||+|+++|+
T Consensus 86 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~F~~~~~ 165 (489)
T 1np7_A 86 GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIE 165 (489)
T ss_dssp SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999998
Q ss_pred -h-ccccccchhhccCCCCCCCCCCCCCCCCcccccCCCchhhhccCCCCCCCCCCccHHHHHHHHHHHH--HHHhcCCC
Q 012490 284 -G-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA--AEYQAQPP 359 (462)
Q Consensus 284 -~-l~~~~~~~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~~~~~~~~~~gGE~aA~~~L~~Fl--~~~l~~Y~ 359 (462)
+ ..++.+++.|..+...+. ......+|+++++++... +......|+|||++|+++|++|+ .+++..|.
T Consensus 166 ~~~~~~~~p~~~p~~~~~~~~--~~~~~~~~~~~~l~~~~~------~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~ 237 (489)
T 1np7_A 166 KKKISIRPCFFAPSQLLPSPN--IKLELTAPPPEFFPQINF------DHRSVLAFQGGETAGLARLQDYFWHGDRLKDYK 237 (489)
T ss_dssp TTTCCCCCCCCCCSCCCCCCC--CCCCCCCCCGGGSCCCCC------CTTSSCCCCCSHHHHHHHHHHHHTTSCCGGGHH
T ss_pred HhccCCCCCCCCcccccCccc--cccccCCCCHhhcCCCCc------CccccCCCCCcHHHHHHHHHHHHhcchhHhhhh
Confidence 5 333334444433322211 112234666666665321 11112359999999999999999 56888888
Q ss_pred CCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 012490 360 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFIT 439 (462)
Q Consensus 360 ~~~~~~~Rns~~~~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~EL~WREF~~~il 439 (462)
.. ||++++.++||+|||||+|||||||+|++++.++.... ...++..||++||+|||||++++
T Consensus 238 ~~-----Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~------------~~~~~~~~f~~eL~WRef~~~~~ 300 (489)
T 1np7_A 238 ET-----RNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQER------------VSNDSTHWLIFELLWRDFFRFVA 300 (489)
T ss_dssp HH-----TTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT------------CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-----ccCCccccCCcCcChhhcCCCCCHHHHHHHHHHHhhcc------------cccchHHHHHHHHHHHHHHHHHH
Confidence 64 77666788999999999999999999999998843321 11345668889999999999999
Q ss_pred HhCCccccccc
Q 012490 440 KKYSSAKKVVE 450 (462)
Q Consensus 440 ~~~P~~~~~~~ 450 (462)
++||++.....
T Consensus 301 ~~~p~~~~~~~ 311 (489)
T 1np7_A 301 QKYGNKLFNRG 311 (489)
T ss_dssp HHHGGGGGSTT
T ss_pred HHCcchhhhhc
Confidence 99999864443
No 2
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=6.6e-56 Score=474.31 Aligned_cols=303 Identities=27% Similarity=0.418 Sum_probs=241.7
Q ss_pred CCCeEEEEEeCCCCccChHHHHHhhhcCCceeeEEEeCCCccCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 012490 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKS----SSGFDKTGPYRASFLIESVSDLRKNLQARGS 197 (462)
Q Consensus 122 ~~~~~LvWFRrDLRl~DN~AL~~A~~~~~~vlpVyi~dp~~~~~~----~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi 197 (462)
.++.+|||||||||++||+||++|++.+.+|+||||+||.++..+ ..|+.+.|.+|++||++||.+|+++|+++|+
T Consensus 3 ~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~ 82 (537)
T 3fy4_A 3 TGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGS 82 (537)
T ss_dssp -CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCcccchhHHHHHHHhcCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 346789999999999999999999998889999999999877532 2344568999999999999999999999999
Q ss_pred cEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCCCCCC-CCCCCChh
Q 012490 198 DLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYG 276 (462)
Q Consensus 198 ~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~-~~~~~~ft 276 (462)
+|+|+.|++.++|.+|+++++|++||+|++|++++++||++|++.|++.||+++.+++++|++++++..+. +++|++||
T Consensus 83 ~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~y~vft 162 (537)
T 3fy4_A 83 RLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQ 162 (537)
T ss_dssp CCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCSSHH
T ss_pred ceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987544 56999999
Q ss_pred hHHHHHhhccc-ccc-chhhccCCCCCCCCCCCCCCCCcccccCCCchhhhccCCCCCCCCCCccHHHHHHHHHHHHHH-
Q 012490 277 GFREKVKGVEI-RKT-IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAE- 353 (462)
Q Consensus 277 ~F~k~~~~l~~-~~~-~~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~~~~~~~~~~gGE~aA~~~L~~Fl~~- 353 (462)
+|+++|++... +.+ ...|..+...+.........+|+++++++.+.. ......|+|||++|+++|++|+.+
T Consensus 163 pf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l~~l~~~~~~------~~~~~~~~~Ge~~A~~~L~~Fl~~~ 236 (537)
T 3fy4_A 163 SFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDE------QADWTPFRGGESEALKRLTKSISDK 236 (537)
T ss_dssp HHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGGG------SSCCCSCCCSHHHHHHHHHHHTCCH
T ss_pred HHHHHHHhhcCCcCCCCCccccCCCcccccccccccCCcHHhcCCCccc------ccccCCCCccHHHHHHHHHHHHhCc
Confidence 99999987531 222 122222221111111223456777777765421 001125999999999999999987
Q ss_pred -HhcCCCCCCCCCCCCCCC--CCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHHHHH
Q 012490 354 -YQAQPPKGNKDGNHDSIY--GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 430 (462)
Q Consensus 354 -~l~~Y~~~~~~~~Rns~~--~~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~EL~ 430 (462)
.+..|.+. ||... +.++||+|||||+|||||||+|++++.+...... ....+.++|++||+
T Consensus 237 ~~l~~Y~~~-----rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~-----------~~~~~~~~f~~eL~ 300 (537)
T 3fy4_A 237 AWVANFEKP-----KGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-----------KHTSPPVSLLGQLL 300 (537)
T ss_dssp HHHHTCCGG-----GCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTTS-----------CCCCTTTSHHHHHH
T ss_pred hHHhhhccc-----ccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhcc-----------cccccHHHHHHHHH
Confidence 68888874 55322 3579999999999999999999999988543210 01223345669999
Q ss_pred HHHHHHHHHHhCCccc
Q 012490 431 WRDFFRFITKKYSSAK 446 (462)
Q Consensus 431 WREF~~~il~~~P~~~ 446 (462)
|||||+++++++|++.
T Consensus 301 WRef~~~~~~~~p~~~ 316 (537)
T 3fy4_A 301 WREFFYTTAFGTPNFD 316 (537)
T ss_dssp HHHHHHHHHHTCTTTT
T ss_pred HHHHHHHHHHHCcchh
Confidence 9999999999999984
No 3
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=8.9e-55 Score=465.95 Aligned_cols=305 Identities=38% Similarity=0.725 Sum_probs=246.4
Q ss_pred CCeEEEEEeCCCCccChHHHHHhhhcCCceeeEEEeCCCccCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 012490 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201 (462)
Q Consensus 123 ~~~~LvWFRrDLRl~DN~AL~~A~~~~~~vlpVyi~dp~~~~~~~~-g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v 201 (462)
++.+|||||||||++||+||.+|++.+.+|+||||+|+.++..+.. |+...+.+|+.||++||++|+++|+++|++|+|
T Consensus 39 ~~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v 118 (525)
T 2j4d_A 39 KGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLI 118 (525)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCeEEEEeCCCcCcchhHHHHHHHhcCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 5678999999999999999999998877899999999988754322 345689999999999999999999999999999
Q ss_pred EECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcC--CeEEEEeCCeeeeCCCCCCCCCCCCCChhhHH
Q 012490 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR 279 (462)
Q Consensus 202 ~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~g--I~v~~~~~~~L~~p~~i~~~~~~~~~~ft~F~ 279 (462)
+.|++.++|.+|++++++++|+++++|+++++++|++|++.|++.| |+++.+++++|++++++++..|++|.+|++|+
T Consensus 119 ~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~vft~F~ 198 (525)
T 2j4d_A 119 RSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFR 198 (525)
T ss_dssp EESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSSHHHHH
T ss_pred EeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEccccccccCCCCcccHHHHH
Confidence 9999999999999999999999999999999999999999999999 89999999999999999988889999999999
Q ss_pred HHHhh-ccccccchhhccCCCCCCCCCCCCCCCCcccccCCCchhhhccCCCCCCCCCCccHHHHHHHHHHHH-H-HHhc
Q 012490 280 EKVKG-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA-A-EYQA 356 (462)
Q Consensus 280 k~~~~-l~~~~~~~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~~~~~~~~~~gGE~aA~~~L~~Fl-~-~~l~ 356 (462)
++|++ +..+.+++.|..+...+. ......+|+++++++... +......|+|||++|+++|++|+ + +++.
T Consensus 199 r~~~~~~~~~~p~~~p~~~~~~~~--~~~~~~~~~l~~l~~~~~------~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~ 270 (525)
T 2j4d_A 199 KSVEAKCSIRSSTRIPLSLGPTPS--VDDWGDVPTLEKLGVEPQ------EVTRGMRFVGGESAGVGRVFEYFWKKDLLK 270 (525)
T ss_dssp HHHHHHCCCCCCCCBCSCCCCCCC--CSCCCCCCCTTTTTCCCC------CCCSEEEECCSHHHHHHHHHHHHTTSCCGG
T ss_pred HHHHHhcCCCCCCCCccccCCccc--cccccCCCCHHHcCCCcc------cccccCCCCCcHHHHHHHHHHHHhhCchHh
Confidence 99987 333334443333222111 012334565666655321 01111249999999999999999 5 5788
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 012490 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 436 (462)
Q Consensus 357 ~Y~~~~~~~~Rns~~~~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~EL~WREF~~ 436 (462)
.|.+. ||++++.++||+|||||+|||||||+|++++.++.... ....+..||++||+|||||+
T Consensus 271 ~Y~~~-----Rd~~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~------------~~~~~~~~f~~EL~WREf~~ 333 (525)
T 2j4d_A 271 VYKET-----RNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKER------------VANNSTYWVLFELIWRDYFR 333 (525)
T ss_dssp GHHHH-----TTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT------------CCSHHHHHHHHHHHHHHHHH
T ss_pred hhccc-----CCCccccccCCCcChhhcCCcCCHHHHHHHHHHHhhcc------------cccccHHHHHHHHHHHHHHH
Confidence 88864 77666889999999999999999999999998754321 11345568889999999999
Q ss_pred HHHHhCCccccccccC
Q 012490 437 FITKKYSSAKKVVEAV 452 (462)
Q Consensus 437 ~il~~~P~~~~~~~~~ 452 (462)
+++++||..-...+..
T Consensus 334 ~~~~~~~~~~~~~~~~ 349 (525)
T 2j4d_A 334 FLSIKCGNSLFHLGGP 349 (525)
T ss_dssp HHHHHHGGGGTSTTTT
T ss_pred HHHHHcCchhhhccCc
Confidence 9999886543444433
No 4
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=9.2e-54 Score=454.16 Aligned_cols=294 Identities=23% Similarity=0.424 Sum_probs=237.1
Q ss_pred CeEEEEEeCCCCccChHHHHHhhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012490 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (462)
Q Consensus 124 ~~~LvWFRrDLRl~DN~AL~~A~~~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v~~ 203 (462)
+.+|||||||||++||+||.+|++.+.+|+||||+||.+++.. ..|.+|+.||++||++|+++|+++|++|+|+.
T Consensus 3 ~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~~~~-----~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~ 77 (484)
T 1owl_A 3 APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSA-----DMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ 77 (484)
T ss_dssp CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTCT-----TCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCCEEEEEEEcchhhcCC-----CCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4679999999999999999999974558999999999887532 57899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCCCCCCCCCCCChhhHHHHHh
Q 012490 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283 (462)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~~~~~~~ft~F~k~~~ 283 (462)
|++.++|.+|+++++|++|++|++|++++++||++|++.|++.||+++.+++++|++++++..+.|++|.+||+|+++|+
T Consensus 78 g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~ 157 (484)
T 1owl_A 78 GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQ 157 (484)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999998
Q ss_pred hccccccchhhccCCCCCC------CCCCCCCCCCcccccCCCchhhhccCCCCCCCCCCccHHHHHHHHHHHHHHHhcC
Q 012490 284 GVEIRKTIEALDQLKGLPS------RGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQ 357 (462)
Q Consensus 284 ~l~~~~~~~~p~~l~~~p~------~~~~~~~~ip~l~~l~~~~~~~~~~~~~~~~~~~~gGE~aA~~~L~~Fl~~~l~~ 357 (462)
+...+.+++.|..+...+. .... ...+++++.+++.. .+. . .|+|||++|+++|++|+.+++..
T Consensus 158 ~~~~~~p~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~------~~~--~-~~~~Ge~~A~~~L~~Fl~~~l~~ 227 (484)
T 1owl_A 158 AQPKPTPVATPTELVDLSPEQLTAIAPLL-LSELPTLKQLGFDW------DGG--F-PVEPGETAAIARLQEFCDRAIAD 227 (484)
T ss_dssp HSCCCCCCCCCCSCCCCCHHHHHHHGGGC-CSSCCCTGGGTCCC------CSC--C-SSCSSHHHHHHHHHHHHHTGGGG
T ss_pred HhcCCCCCCCccccccccccccccccccc-cCCCCCHHHcCCCc------ccc--C-cCCCCHHHHHHHHHHHHHHHHHH
Confidence 7532223333322211100 0000 11244444444422 111 3 59999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 012490 358 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 437 (462)
Q Consensus 358 Y~~~~~~~~Rns~~~~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~EL~WREF~~~ 437 (462)
|... || .++.++||+|||||+|||||||+|++++.+......... ..++...|+ +||+|||||++
T Consensus 228 Y~~~-----rd-~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~--------~~~~~~~fl-~eL~WREf~~~ 292 (484)
T 1owl_A 228 YDPQ-----RN-FPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDE--------ARNSIRVWQ-QELAWREFYQH 292 (484)
T ss_dssp HHHH-----TT-CTTSCCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHH--------HHHHHHHHH-HHHHHHHHHHH
T ss_pred hccc-----cC-CCCccCCcCccHhHcCCCcCHHHHHHHHHHHhccccccc--------ccccHHHHH-HHHHHHHHHHH
Confidence 9874 66 478899999999999999999999999987654100000 012234455 89999999999
Q ss_pred HHHhCCcccc
Q 012490 438 ITKKYSSAKK 447 (462)
Q Consensus 438 il~~~P~~~~ 447 (462)
+++++|++..
T Consensus 293 ~~~~~P~~~~ 302 (484)
T 1owl_A 293 ALYHFPSLAD 302 (484)
T ss_dssp HHHHCGGGGG
T ss_pred HHHhCCcccc
Confidence 9999999855
No 5
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=4.4e-53 Score=453.13 Aligned_cols=307 Identities=21% Similarity=0.309 Sum_probs=236.8
Q ss_pred CCCeEEEEEeCCCCccChHHHHHhhhcCC---ceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---
Q 012490 122 IRRASIVWFRNDLRVHDNESLNTANNESV---SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQAR--- 195 (462)
Q Consensus 122 ~~~~~LvWFRrDLRl~DN~AL~~A~~~~~---~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~--- 195 (462)
.++++|||||||||++||+||++|++.+. +|+||||+||.++..+ ..|.+|+.||++||.+|+++|+++
T Consensus 2 ~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~~~-----~~~~~r~~Fl~~sL~~L~~~L~~~~~~ 76 (538)
T 3tvs_A 2 TRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTK-----NVGYNRMRFLLDSLQDIDDQLQAATDG 76 (538)
T ss_dssp CSCEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSCST-----TCCHHHHHHHHHHHHHHHHHGGGSCSS
T ss_pred CCCcEEEEeCCCcchhhhHHHHHHHHhCCCCCCEEEEEecChhhhccC-----CCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 46789999999999999999999998765 8999999999988653 578999999999999999999999
Q ss_pred CCcEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCCCCCC-CCCCCC
Q 012490 196 GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTN 274 (462)
Q Consensus 196 Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~-~~~~~~ 274 (462)
|++|+|+.|++.++|.+|+++++|++||+|++|++++++||++|++.|++.||+++.|++++|++++++..+. +.+|.+
T Consensus 77 G~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~ 156 (538)
T 3tvs_A 77 RGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLT 156 (538)
T ss_dssp SSCCEEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCS
T ss_pred CCeEEEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986554 568899
Q ss_pred hhhHHHHHhhcccc-ccchhhcc--CC--CCCCCCCCC---CCCCCcccccCCCchhhhccCCCCCCCCCCccHHHHHHH
Q 012490 275 YGGFREKVKGVEIR-KTIEALDQ--LK--GLPSRGDVE---PGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQR 346 (462)
Q Consensus 275 ft~F~k~~~~l~~~-~~~~~p~~--l~--~~p~~~~~~---~~~ip~l~~l~~~~~~~~~~~~~~~~~~~~gGE~aA~~~ 346 (462)
|++|+++++++..+ .+.+.|.. +. ..|...... ...+|+++++++.+... .......|+|||++|+++
T Consensus 157 f~~f~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~~~~~----~~~~~~~~~~Ge~~A~~~ 232 (538)
T 3tvs_A 157 YQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNM----GFLAKINWRGGETQALLL 232 (538)
T ss_dssp HHHHHHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCCCCCS----SCCCCCCCCCCHHHHHHH
T ss_pred hHHHHHHHHhhCCCCCCCCCccccccccccCCcccccccccccCCCCHHHcCCCcccc----cccccCCCCCCHHHHHHH
Confidence 99999999875432 23333311 11 111100000 02356666776654210 000124699999999999
Q ss_pred HHHHHHH----HhcCCCCCCCCCCCCCCCC-CCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcc
Q 012490 347 LKKFAAE----YQAQPPKGNKDGNHDSIYG-ANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 421 (462)
Q Consensus 347 L~~Fl~~----~l~~Y~~~~~~~~Rns~~~-~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~~ 421 (462)
|++|+.+ .+..|.+. ||+..+ .++||+|||||+|||||||+|++++.+....... .. +..| ....+
T Consensus 233 L~~Fl~~~~~~~l~~y~~~-----r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~-~~-~~~~--~~~~~ 303 (538)
T 3tvs_A 233 LDERLKVEQHAFERGFYLP-----NQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQL-RA-CVRG--VQMTG 303 (538)
T ss_dssp HHHHHHHHHHHHHSCCCCT-----TTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHTCSSSC-CC-CCSS--SCCTT
T ss_pred HHHHHHhhhhhhHhhhccc-----ccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHHhhhcc-cc-cccc--cccch
Confidence 9999943 37788764 554443 5789999999999999999999999886532100 00 0000 01122
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccc
Q 012490 422 SNWLMFELLWRDFFRFITKKYSSAK 446 (462)
Q Consensus 422 ~~~~~~EL~WREF~~~il~~~P~~~ 446 (462)
.++|++||+|||||+++++++|++.
T Consensus 304 ~~~f~~eL~WRef~~~~~~~~p~~~ 328 (538)
T 3tvs_A 304 GAHITGQLIWREYFYTMSVNNPNYD 328 (538)
T ss_dssp TTTTHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchh
Confidence 3456699999999999999999984
No 6
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=7.6e-53 Score=452.68 Aligned_cols=300 Identities=25% Similarity=0.411 Sum_probs=237.6
Q ss_pred CeEEEEEeCCCCccChHHHHHhhhcCCc------eeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 012490 124 RASIVWFRNDLRVHDNESLNTANNESVS------VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGS 197 (462)
Q Consensus 124 ~~~LvWFRrDLRl~DN~AL~~A~~~~~~------vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi 197 (462)
+.+|||||||||++||+||.+|++.+.+ |+||||+||.++... ..+.+|+.||++||++|+++|+++|+
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~-----~~~~~r~~Fl~~sL~~L~~~L~~~G~ 103 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWM-----QVGANRWRFLQQTLEDLDNQLRKLNS 103 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCT-----TSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhccc-----CCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4559999999999999999999875544 999999999887542 57899999999999999999999999
Q ss_pred cEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCC-CCCCCCCCCChh
Q 012490 198 DLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYG 276 (462)
Q Consensus 198 ~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i-~~~~~~~~~~ft 276 (462)
+|+|+.|++.++|.+|++++++++|+++++|+|++++||+.|++.|++.||+++.+++++|++++++ ....|++|.+|+
T Consensus 104 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vft 183 (543)
T 2wq7_A 104 RLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQ 183 (543)
T ss_dssp CCEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSHH
T ss_pred eEEEEeCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999984 456688999999
Q ss_pred hHHHHHhhccccccchhhccCCCCCCC--CC-----CCCCCCCcccccCCCchhhhccCCCCCCCCCCccHHHHHHHHHH
Q 012490 277 GFREKVKGVEIRKTIEALDQLKGLPSR--GD-----VEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK 349 (462)
Q Consensus 277 ~F~k~~~~l~~~~~~~~p~~l~~~p~~--~~-----~~~~~ip~l~~l~~~~~~~~~~~~~~~~~~~~gGE~aA~~~L~~ 349 (462)
+|+++|+++..+.+++.|..+...+.+ .. +....+|+++++++.... .....|+|||++|+++|++
T Consensus 184 ~F~~~~~~~~~~~p~~~p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~~~~~-------~~~~~~~~Ge~~A~~~L~~ 256 (543)
T 2wq7_A 184 KFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEE-------LGPNKFPGGETEALRRMEE 256 (543)
T ss_dssp HHHHHHTTSCCCCCCCCCCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCGGG-------CCCCCSCCSHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCcchhccccccccccccccccccccCCCCHHHcCCCccc-------cccCCCCCCHHHHHHHHHH
Confidence 999999875322233333222211000 00 000234555556554310 1123599999999999999
Q ss_pred HHHHH--hcCCCCCCCCCCCCCCCC--CCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHH
Q 012490 350 FAAEY--QAQPPKGNKDGNHDSIYG--ANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 425 (462)
Q Consensus 350 Fl~~~--l~~Y~~~~~~~~Rns~~~--~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~~~~~~ 425 (462)
|++++ +..|.+. ||. +. .++||+|||||+|||||||+|++++.+...... ....+.++|
T Consensus 257 Fl~~~~~l~~Y~~~-----Rd~-p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~-----------~~~~~~~~f 319 (543)
T 2wq7_A 257 SLKDEIWVARFEKP-----NTA-PNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQP-----------KHSQPPVSL 319 (543)
T ss_dssp HHTCHHHHHHCCGG-----GSC-SSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHCS-----------SCCCTTTSH
T ss_pred HHhCChhhhhhccc-----ccC-ccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhccc-----------cccccHHHH
Confidence 99999 9999874 664 44 489999999999999999999999987543210 011233456
Q ss_pred HHHHHHHHHHHHHHHhCCccccccccCc
Q 012490 426 MFELLWRDFFRFITKKYSSAKKVVEAVP 453 (462)
Q Consensus 426 ~~EL~WREF~~~il~~~P~~~~~~~~~p 453 (462)
++||+|||||+++++++|++.. .+..|
T Consensus 320 ~~eL~WREf~~~~~~~~P~~~~-~~~~~ 346 (543)
T 2wq7_A 320 IGQLMWREFYYTVAAAEPNFDR-MLGNV 346 (543)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTS-STTCT
T ss_pred HHHHHHHHHHHHHHHhCCcccc-ccCCh
Confidence 6999999999999999999853 34444
No 7
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=1.3e-52 Score=443.69 Aligned_cols=284 Identities=23% Similarity=0.354 Sum_probs=229.9
Q ss_pred eEEEEEeCCCCccChHHHHHhhhc-CCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEE-
Q 012490 125 ASIVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVR- 202 (462)
Q Consensus 125 ~~LvWFRrDLRl~DN~AL~~A~~~-~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v~- 202 (462)
.+|||||||||++||+||.+|++. ..+|+||||+||.+++.+ ..|.+|+.||++||++|+++|+++|++|+|+
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~~~~-----~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~ 76 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATH-----NMSPRQAELINAQLNGLQIALAEKGIPLLFRE 76 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEeCCCCcccchHHHHHHHhCCCCCEEEEEEECchhhccC-----CCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 479999999999999999999983 349999999999887543 5789999999999999999999999999999
Q ss_pred ---ECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCCCCCCCCCCCChhhHH
Q 012490 203 ---VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR 279 (462)
Q Consensus 203 ---~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~~~~~~~ft~F~ 279 (462)
.|++.++|.+|++++++++|++|++|++++++||++|++.|++ |+++.+++++|++++++..+.|++|.+||+|+
T Consensus 77 ~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~ 154 (471)
T 1dnp_A 77 VDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFK 154 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHH
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC--cEEEEecCCEEEchhhcccCCCCCCcchHHHH
Confidence 8999999999999999999999999999999999999999976 99999999999999999888889999999999
Q ss_pred HHHhhccc---cccchhhccCCCCCCCCCCCCCCCCcccccCCCchhhhccCCCCCCCCCCccHHHHHHHHHHHHHHHhc
Q 012490 280 EKVKGVEI---RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356 (462)
Q Consensus 280 k~~~~l~~---~~~~~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~~~~~~~~~~gGE~aA~~~L~~Fl~~~l~ 356 (462)
++|++... +++.+.|..+.. + ......+++ +++.. . ......|+|||++|+++|++|+.+++.
T Consensus 155 ~~~~~~l~~~~p~~~~~p~~~~~-~---~~~~~~~~~---l~~~~------~-~~~~~~~~~Ge~~A~~~L~~Fl~~~l~ 220 (471)
T 1dnp_A 155 NAWLKRLREGMPECVAAPKVRSS-G---SIEPSPSIT---LNYPR------Q-SFDTAHFPVEEKAAIAQLRQFCQNGAG 220 (471)
T ss_dssp HHHHHHHHTCCCCCCCCCCCCTT-C---CCCCCCCCC---CCSCC------C-CCCTTTSCCSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhccccCCCCCCCccccCc-c---cccCCCCcc---cCCCc------c-ccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99987421 222222221110 0 000111221 22211 0 011235999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCc-chHHHHHHHHHHHHH
Q 012490 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA-GSNWLMFELLWRDFF 435 (462)
Q Consensus 357 ~Y~~~~~~~~Rns~~~~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~-~~~~~~~EL~WREF~ 435 (462)
.|... || .++.++||+|||||+|||||||+|++++.+..... ...+ ...|+ +||+|||||
T Consensus 221 ~Y~~~-----rd-~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~------------~~~~~~~~fl-~eL~WREf~ 281 (471)
T 1dnp_A 221 EYEQQ-----RD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQA------------LDGGAGSVWL-NELIWREFY 281 (471)
T ss_dssp HHHHH-----TT-CTTSCCSCCCHHHHHHTSSCHHHHHHHHHHHCGGG------------GGTSTTHHHH-HHHHHHHHH
T ss_pred Hhhhc-----cC-CcCccCCCCCCHhHcCCCcCHHHHHHHHHHHhccc------------cccccHHHHH-HHHHHHHHH
Confidence 99874 66 47888999999999999999999999998864321 0122 34455 799999999
Q ss_pred HHHHHhCCccccc
Q 012490 436 RFITKKYSSAKKV 448 (462)
Q Consensus 436 ~~il~~~P~~~~~ 448 (462)
+++++++|++.+.
T Consensus 282 ~~~~~~~P~~~~~ 294 (471)
T 1dnp_A 282 RHLITYHPSLCKH 294 (471)
T ss_dssp HHHHHHCGGGGGT
T ss_pred HHHHHhCCchhcc
Confidence 9999999998654
No 8
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=9.6e-52 Score=441.23 Aligned_cols=304 Identities=19% Similarity=0.289 Sum_probs=233.1
Q ss_pred CCCCCeEEEEEeCCCCccChHHHHHhhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcE
Q 012490 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDL 199 (462)
Q Consensus 120 ~~~~~~~LvWFRrDLRl~DN~AL~~A~~~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L 199 (462)
++.++.+|||||||||++||+||.+|++.+ +|+||||+||.++..+ ..+..+..||++||++|+++|+++|++|
T Consensus 8 ~~~~~~~l~WfrrDLRl~DN~aL~~A~~~~-~v~pvfi~dp~~~~~~-----~~~~~~~~fl~~sL~~L~~~L~~~G~~L 81 (509)
T 1u3d_A 8 CGSGGCSIVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEGHY-----HPGRVSRWWLKNSLAQLDSSLRSLGTCL 81 (509)
T ss_dssp -----CEEEEESSCCCSTTCHHHHHHHHHS-CEEEEEEECGGGGTTC-----CCCHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCcEEEEECCCCccchhHHHHHHHhCC-CEEEEEEECchhcccC-----CcchHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 455678899999999999999999999875 8999999999877542 2366677799999999999999999999
Q ss_pred EEEE-CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCCCCCCCCCCCChhhH
Q 012490 200 VVRV-GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF 278 (462)
Q Consensus 200 ~v~~-G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~~~~~~~ft~F 278 (462)
+|+. |++.++|.+|+++++|++|++|.+|+|++++||++|++.|++.||+++.+++++|++++++..+.|++|.+|++|
T Consensus 82 ~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftpf 161 (509)
T 1u3d_A 82 ITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAF 161 (509)
T ss_dssp EEEECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHH
T ss_pred EEEeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHHH
Confidence 9998 699999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHHHhhccc--cccchhhccCCCCCCCCCCCCCCCCcccccCCCchhhhccCCCCCCCCCCccHHHHHHHHHHHHHHHhc
Q 012490 279 REKVKGVEI--RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQA 356 (462)
Q Consensus 279 ~k~~~~l~~--~~~~~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~~~~~~~~~~gGE~aA~~~L~~Fl~~~l~ 356 (462)
++++.+... +++.+.|..+ +.. . ...++++++++.+....... ......|+|||++|+++|++|+++++.
T Consensus 162 ~r~~~~~~~~~~~~~~~p~~~---~~~-~---~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~Ge~~A~~~L~~Fl~~~l~ 233 (509)
T 1u3d_A 162 WERCLSMPYDPESPLLPPKKI---ISG-D---VSKCVADPLVFEDDSEKGSN-ALLARAWSPGWSNGDKALTTFINGPLL 233 (509)
T ss_dssp HHHHHTCSSCCCCCCCCCSCC---CBT-T---GGGSSCCCCCCCCHHHHHHH-TTHHHHCCCSHHHHHHHHHHHHTTGGG
T ss_pred HHHHHhccCCCCCCCCCcccc---Ccc-c---cCCCChhHhCCCcccccchh-hhccccCCCcHHHHHHHHHHHHHHHHH
Confidence 999887421 1122211111 100 0 01123344444321000000 000024899999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhh----hhcccccCCCCCCCCCCcchHHHHHHHHHH
Q 012490 357 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT----SISAASKWNDGESGSSGAGSNWLMFELLWR 432 (462)
Q Consensus 357 ~Y~~~~~~~~Rns~~~~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~----~~~~~~~k~~~g~~~~~~~~~~~~~EL~WR 432 (462)
.|... || .++.++||+|||||+|||||||+|++++.+... +... ....+.++|++||+||
T Consensus 234 ~Y~~~-----Rd-~p~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~----------~~~~s~~~fl~eL~WR 297 (509)
T 1u3d_A 234 EYSKN-----RR-KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNE----------AGEESVNLFLKSIGLR 297 (509)
T ss_dssp GTTTT-----TT-CSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHH
T ss_pred hhhhc-----cC-CCCCCCCCCCChhhccCCCCHHHHHHHHHHHhhhhcccccc----------cccchHHHHHHHHHHH
Confidence 99874 77 467789999999999999999999999987531 1000 0112345666999999
Q ss_pred HHHHHHHHhCCccc-----cccccCc
Q 012490 433 DFFRFITKKYSSAK-----KVVEAVP 453 (462)
Q Consensus 433 EF~~~il~~~P~~~-----~~~~~~p 453 (462)
|||+++++++|++. ..++.+|
T Consensus 298 Ef~~~~~~~~p~~~~~~~~~~~~~lp 323 (509)
T 1u3d_A 298 EYSRYISFNHPYSHERPLLGHLKFFP 323 (509)
T ss_dssp HHHHHHHHSSTTTTTSCSCCTTTTCC
T ss_pred HHHHHHHHhCccccccchhhhhccCC
Confidence 99999999999853 3456666
No 9
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-50 Score=424.21 Aligned_cols=256 Identities=25% Similarity=0.360 Sum_probs=215.4
Q ss_pred EEEEEeCCCCccChHHHHHhhhcCCceeeEEEeCCCccCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 012490 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDK-TGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204 (462)
Q Consensus 126 ~LvWFRrDLRl~DN~AL~~A~~~~~~vlpVyi~dp~~~~~~~~g~~~-~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v~~G 204 (462)
+|||||||||++||+||.+|++.+.+|+||||+||.+++.+ . .+.+|+.||++||++|+++|+++|++|+|+.|
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~-----~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g 77 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINN-----PYKSEFAVSFMINSLLELDDELRKKGSRLNVFFG 77 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHSSC-----TTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEES
T ss_pred EEEEeCCCCccchhHHHHHHHhcCCCEEEEEEeChhhhccC-----CcCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 79999999999999999999998889999999999887643 3 78999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCCCCCCCCCCCChhhHHHHHhh
Q 012490 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG 284 (462)
Q Consensus 205 ~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~~~~~~~ft~F~k~~~~ 284 (462)
++.++|.+|++ +|++|++|++|++++++||++|++.|++.||+++.+++++|++++++ +|++||+|+++|++
T Consensus 78 ~~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~------~y~vftpf~~~~~~ 149 (440)
T 2e0i_A 78 EAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF------HHRNFTSFYNEVSK 149 (440)
T ss_dssp CHHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC------CCSSHHHHHHHHTT
T ss_pred CHHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccccc------CcccCcHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999987 57899999999987
Q ss_pred ccccc-c--chhhccCCCCCCCCCCCCCCCCcccccCCCchhhhccCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCC
Q 012490 285 VEIRK-T--IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 361 (462)
Q Consensus 285 l~~~~-~--~~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~~~~~~~~~~gGE~aA~~~L~~Fl~~~l~~Y~~~ 361 (462)
..... + ++.|. .+|. +.. +.++ + . ....|+|||++|+++|+ |+++++..| +.
T Consensus 150 ~~~~~p~~~~~~~~---~~~~-----p~~---~~~l---p-----~----~~~~~~~Ge~~A~~~L~-Fl~~~l~~Y-~~ 204 (440)
T 2e0i_A 150 VKVREPETMEGSFD---VTDS-----SMN---VDFL---L-----T----FKKIESPLFRGGRREGL-YLLHRNVDF-RR 204 (440)
T ss_dssp SCCCCCCCCCCCBC---CCSS-----SBC---GGGG---G-----G----TCCCCCTTCCCSHHHHH-HHHTCCCCG-GG
T ss_pred hcccccccCCCCcc---cCCC-----cch---hhhC---C-----c----cccCCCCCHHHHHHHHH-HHHhhhhcC-Cc
Confidence 41111 1 11111 1111 000 1111 1 0 11358999999999999 999999999 74
Q ss_pred CCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 012490 362 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKK 441 (462)
Q Consensus 362 ~~~~~Rns~~~~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~EL~WREF~~~il~~ 441 (462)
|| .++.++||+|||||+|||||||+|++++ . +...|+ +||+|||||++++++
T Consensus 205 -----rd-~p~~~~tS~LSPyL~~G~lSpr~v~~~~----~-----------------~~~~fl-~eL~WREf~~~~~~~ 256 (440)
T 2e0i_A 205 -----RD-YPAENNNYRLSPHLKFGTISMREAYYTQ----K-----------------GKEEFV-RELYWRDFFTLLAYY 256 (440)
T ss_dssp -----TT-CTTTTCCCCCHHHHHTTSSCHHHHHHHS----T-----------------TCHHHH-HHHHHHHHHHHHHHH
T ss_pred -----CC-CccccCCCCccHhHhCCCCCHHHHHHHh----c-----------------CHHHHH-HHHHHHHHHHHHHHh
Confidence 67 4788999999999999999999999987 1 123455 899999999999999
Q ss_pred CCcccc
Q 012490 442 YSSAKK 447 (462)
Q Consensus 442 ~P~~~~ 447 (462)
+|++..
T Consensus 257 ~P~~~~ 262 (440)
T 2e0i_A 257 NPHVFG 262 (440)
T ss_dssp CGGGTT
T ss_pred CCCccc
Confidence 999865
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=8.5e-50 Score=416.74 Aligned_cols=261 Identities=24% Similarity=0.345 Sum_probs=218.0
Q ss_pred eEEEEEeCCCCccChHHHHHhhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 012490 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204 (462)
Q Consensus 125 ~~LvWFRrDLRl~DN~AL~~A~~~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v~~G 204 (462)
.+|||||||||++||+||.+|++.+ +|+||||+||.++. . +.+|+.||++||++|+++|+++|++|+|+.|
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~~~-~v~~vfi~d~~~~~-------~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g 73 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALARG-PVVGLVVLDPNNLK-------T-TPRRRAWFLENVRALREAYRARGGALWVLEG 73 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHTTS-CEEEEEEECHHHHS-------S-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEeCCCCCccccHHHHHHHhCC-CEEEEEEECCcccc-------C-CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5799999999999999999999876 99999999998763 4 7899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCCCCCCCCCCCChhhHHHHHhh
Q 012490 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG 284 (462)
Q Consensus 205 ~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~~~~~~~ft~F~k~~~~ 284 (462)
++.++|.+|++++++++|++|++|+++++++|++|++.| ||+++.+++++|+++++ |++|.+||+|+|+|+
T Consensus 74 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i~~~~~~~~~l~~~~~-----~~~~~~~t~f~k~~~- 144 (420)
T 2j07_A 74 LPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL---PVPLHLLPAPHLLPPDL-----PRAYRVYTPFSRLYR- 144 (420)
T ss_dssp CHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SSCEEEECCCCSSCTTC-----SSCCSSHHHHHTTCC-
T ss_pred CHHHHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc---CCeEEEeCCCEEEccCC-----CCccccccHHHHHHh-
Confidence 999999999999999999999999999999999999998 99999999999999987 789999999999887
Q ss_pred ccccccchhhccCCCCCCCCCCCCCCCCcccccCCCchhhhccCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 012490 285 VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKD 364 (462)
Q Consensus 285 l~~~~~~~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~~~~~~~~~~gGE~aA~~~L~~Fl~~~l~~Y~~~~~~ 364 (462)
. ...|++.|..+ . +| +.+.++.. .+ .....|+|||++|+++|++|+++++..|...
T Consensus 145 ~-~~~p~~~p~~~-~-----------~p-~~~~~l~~------~~-~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~--- 200 (420)
T 2j07_A 145 G-AAPPLPPPEAL-P-----------KG-PEEGEIPR------ED-PGLPLPEPGEEAALAGLRAFLEAKLPRYAEE--- 200 (420)
T ss_dssp C-CCCCCCCCSSC-C-----------CC-CCCCCCCC------CC-CSSCCCCCSHHHHHHHHHHHHHHTGGGHHHH---
T ss_pred h-ccCCCCCcccc-C-----------CC-CccccCCC------cc-cccccCCCcHHHHHHHHHHHHHHHHhhhhhc---
Confidence 2 22233322221 0 11 11111211 01 1123599999999999999999999999874
Q ss_pred CCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCc
Q 012490 365 GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 444 (462)
Q Consensus 365 ~~Rns~~~~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~EL~WREF~~~il~~~P~ 444 (462)
|| .++.++||+|||||+||+||||+|++++.+... .+... |++||+|||||+++++++|+
T Consensus 201 --rd-~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~----------------~~~~~-f~~eL~WREf~~~~~~~~p~ 260 (420)
T 2j07_A 201 --RD-RLDGEGGSRLSPYFALGVLSPRLAAWEAERRGG----------------EGARK-WVAELLWRDFSYHLLYHFPW 260 (420)
T ss_dssp --TT-CTTCTTSCCCHHHHHTTSSCHHHHHHHHHHHCS----------------HHHHH-HHHHHHHHHHHHHHHHHCGG
T ss_pred --cC-CCCccCCCCcchhhcCCccCHHHHHHHHHHHhc----------------cCHHH-HHHHHHHHHHHHHHHHhCCc
Confidence 66 467899999999999999999999999987531 12233 45999999999999999999
Q ss_pred ccc
Q 012490 445 AKK 447 (462)
Q Consensus 445 ~~~ 447 (462)
+..
T Consensus 261 ~~~ 263 (420)
T 2j07_A 261 MAE 263 (420)
T ss_dssp GGT
T ss_pred ccc
Confidence 843
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=2e-48 Score=414.06 Aligned_cols=288 Identities=18% Similarity=0.208 Sum_probs=215.2
Q ss_pred CCCeEEEEEeCCCCccChHHHHHhhh----cCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 012490 122 IRRASIVWFRNDLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGS 197 (462)
Q Consensus 122 ~~~~~LvWFRrDLRl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi 197 (462)
.++++|||||||||++||+||.+|++ .+.+|+||||+||.++.. ..+.+|++||++||.+|+++|+++|+
T Consensus 36 ~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~------~~~~~r~~FL~~sL~dL~~~L~~lG~ 109 (506)
T 3umv_A 36 PGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLL------SARRRQLGFLLRGLRRLAADAAARHL 109 (506)
T ss_dssp TTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG------GCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc------CCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999986 467999999999985421 46899999999999999999999999
Q ss_pred cEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhh--hcCCeEEEEeCCeeeeCCCCCCCCCCCCCCh
Q 012490 198 DLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK--DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNY 275 (462)
Q Consensus 198 ~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~--~~gI~v~~~~~~~L~~p~~i~~~~~~~~~~f 275 (462)
+|+|+.|++.++ .+|+++++|++||++.++...+++||++|++.|+ +.||+++.|++++|++++.+..+. .|.++
T Consensus 110 ~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~~v~~~~--~~~~~ 186 (506)
T 3umv_A 110 PFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM--EYSAK 186 (506)
T ss_dssp CEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHHHHCSSC--CSSHH
T ss_pred ceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcccccCCC--CCCcc
Confidence 999999999999 9999999999999977766656688999999997 789999999999999999876544 45555
Q ss_pred hhHHHHHhhccccccchhhccCCC-CCCCCCC-CCCCCCcccc-c-CCCchhhhccCCCCCCCCCCccHHHHHHHH----
Q 012490 276 GGFREKVKGVEIRKTIEALDQLKG-LPSRGDV-EPGDIPSLLD-L-GLSQSAAMSQGGKPAANSMKGGETEALQRL---- 347 (462)
Q Consensus 276 t~F~k~~~~l~~~~~~~~p~~l~~-~p~~~~~-~~~~ip~l~~-l-~~~~~~~~~~~~~~~~~~~~gGE~aA~~~L---- 347 (462)
| |++++.+.......+.|. +.. .+..... ...+++.+.+ + ++. . .......|+|||++|+++|
T Consensus 187 t-~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~-~~~~~~~~~~Ge~~A~~~L~~~~ 257 (506)
T 3umv_A 187 T-FRGKVSKVMDEYLVEFPE-LPAVVPWDREQPEGVDWDALIARVCSEA------E-NVPEIDWCEPGEEAAIEALLGSK 257 (506)
T ss_dssp H-HHHHHHTTHHHHSCCCCC-CCCCCCCCSCCCCCCCHHHHHHHHHHTS------C-CCCCCCSSCCSHHHHHHHHHCTT
T ss_pred C-HHHHHHHhccccccCCCC-CCCccccccccccccChhhhhhhhcccc------c-cccccCCCCCCHHHHHHHHHhhH
Confidence 5 665665432110000010 000 0000000 0001111110 0 110 0 0111234799999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCC-CCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHH
Q 012490 348 KKFAAEYQAQPPKGNKDGNHDSIYGA-NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 426 (462)
Q Consensus 348 ~~Fl~~~l~~Y~~~~~~~~Rns~~~~-~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~~~~~~~ 426 (462)
++|+.+++..|... ||. +.. ++||+|||||+||+||||+|++++.+..... ..+.+.|+
T Consensus 258 ~~Fl~~~l~~Y~~~-----Rd~-p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~~~--------------~~~~~~f~ 317 (506)
T 3umv_A 258 DGFLTKRIKSYETD-----RND-PTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLS--------------PKSVDAFL 317 (506)
T ss_dssp TCHHHHTGGGHHHH-----TTC-TTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHGGGS--------------HHHHHHHH
T ss_pred HHHHHhHHhhhccc-----cCC-ccccCCCccCCHHHhCCCcCHHHHHHHHHHHHhhc--------------cccHHHHH
Confidence 99999999999864 664 555 8999999999999999999999998765321 12344566
Q ss_pred HHHHHH-HHHHHHHHhCCcccc
Q 012490 427 FELLWR-DFFRFITKKYSSAKK 447 (462)
Q Consensus 427 ~EL~WR-EF~~~il~~~P~~~~ 447 (462)
+||+|| |||+++++++|++..
T Consensus 318 ~eL~WRREf~~~~~~~~p~~~~ 339 (506)
T 3umv_A 318 EELVVRRELADNFCYYQPQYDS 339 (506)
T ss_dssp HHHTHHHHHHHHHHHHCTTTTS
T ss_pred HHHHHhHHHHHHHHHhCcchhh
Confidence 999996 999999999999843
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=4.5e-48 Score=410.40 Aligned_cols=292 Identities=17% Similarity=0.201 Sum_probs=217.7
Q ss_pred eEEEEEeCCCCccChHHHHHhhh----cCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 012490 125 ASIVWFRNDLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLV 200 (462)
Q Consensus 125 ~~LvWFRrDLRl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~ 200 (462)
.+|||||||||++||+||.+|++ .+.+|+||||+||.++. .+.+|+.||++||++|+++|+++|++|+
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~--------~~~~r~~Fl~~sL~~L~~~L~~~G~~L~ 109 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE--------AGIRQYEFMLKGLQELEVSLSRKKIPSF 109 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG--------SCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc--------cCHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 78999999999999999999985 35789999999998763 4789999999999999999999999999
Q ss_pred EEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCCCCCCCCCCCChhhHHH
Q 012490 201 VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE 280 (462)
Q Consensus 201 v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~~~~~~~ft~F~k 280 (462)
|+.|++.++|.+|+++++|++|+++++|++++.++++++++.| ||+++.+++++|++++++..+. .|.+|| |++
T Consensus 110 v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi~~~~~~~~~l~~~~~~~~~~--~~~v~t-f~~ 183 (482)
T 2xry_A 110 FLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SIPFFEVDAHNVVPCWEASQKH--EYAAHT-FRP 183 (482)
T ss_dssp EEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CSCEEEECCSSSSCHHHHCSSC--CSSHHH-HHH
T ss_pred EEeCCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CCEEEEEeCCEEccccccccCC--CCceec-chH
Confidence 9999999999999999999999999999999999999888766 9999999999999998876544 388888 555
Q ss_pred HHhhccc--cccchhhccCCCCCCCCCC-CCCCCCc-ccccCCCc-hhhhc--cCC--C-CC--CCCCCccHHHHHHHHH
Q 012490 281 KVKGVEI--RKTIEALDQLKGLPSRGDV-EPGDIPS-LLDLGLSQ-SAAMS--QGG--K-PA--ANSMKGGETEALQRLK 348 (462)
Q Consensus 281 ~~~~l~~--~~~~~~p~~l~~~p~~~~~-~~~~ip~-l~~l~~~~-~~~~~--~~~--~-~~--~~~~~gGE~aA~~~L~ 348 (462)
++++... ..+. |. ..+.+....+ .+..++. +..++... .+... .-+ . .. ...|+|||++|+++|+
T Consensus 184 ~~~~~~~~~~~~~--p~-~~p~~~~~~lp~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ge~~A~~~L~ 260 (482)
T 2xry_A 184 KLYALLPEFLEEF--PE-LEPNSVTPELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVME 260 (482)
T ss_dssp HHHHHHHHHCCCC--CC-CCCCSSCCC---------CHHHHHHHHHHHHGGGCCBCTTSCBCCCTTSCCCSHHHHHHHHH
T ss_pred HHHHHHHhhcccc--CC-CCCCCCccccCCccchhhhhhhhcccCCCCCcchhhhccccccccccCCCCCcHHHHHHHHH
Confidence 6665210 0000 10 0111100000 0001111 11111100 00000 000 0 00 1158999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCCCcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCCCCCCCcchHHHHHH
Q 012490 349 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFE 428 (462)
Q Consensus 349 ~Fl~~~l~~Y~~~~~~~~Rns~~~~~~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~E 428 (462)
+|+++++..|.+. ||. ++.++||+|||||+|||||||+|++++.+... ...+.++|++|
T Consensus 261 ~Fl~~~l~~Y~~~-----Rd~-p~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~---------------~~~~~e~fl~E 319 (482)
T 2xry_A 261 SFIADRLDSYGAL-----RND-PTKNMLSNLSPYLHFGQISSQRVVLEVEKAES---------------NPGSKKAFLDE 319 (482)
T ss_dssp HHHHHTHHHHHHH-----TTC-TTSCCSCCCHHHHHTTSSCHHHHHHHHHHCCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHhhhccc-----cCC-CCccCCCCcCHHHhCCccCHHHHHHHHHHhhc---------------ccccHHHHHHH
Confidence 9999999999874 664 67799999999999999999999999987521 02344566799
Q ss_pred HH-HHHHHHHHHHhCCccccccccCccc
Q 012490 429 LL-WRDFFRFITKKYSSAKKVVEAVPAT 455 (462)
Q Consensus 429 L~-WREF~~~il~~~P~~~~~~~~~p~~ 455 (462)
|+ |||||+++++++|++. ..+..|.|
T Consensus 320 Li~WREf~~~~~~~~P~~~-~~~~~~~w 346 (482)
T 2xry_A 320 ILIWKEISDNFCYYNPGYD-GFESFPSW 346 (482)
T ss_dssp HTHHHHHHHHHHHHCTTTT-SGGGSCHH
T ss_pred HHHHHHHHHHHHHhCCccc-ccccchHH
Confidence 97 9999999999999984 45555443
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=99.97 E-value=1e-31 Score=283.58 Aligned_cols=300 Identities=17% Similarity=0.169 Sum_probs=206.6
Q ss_pred EEEEEeCCCCccChHHHHHhhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEE--
Q 012490 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV-- 203 (462)
Q Consensus 126 ~LvWFRrDLRl~DN~AL~~A~~~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v~~-- 203 (462)
+++|.-.|.-..++++|..+... ..+|++++...... +...+++|+.|++.||++|+++|+++|.+|+++.
T Consensus 17 ~~~~ilgdQL~~~~~~~~~~~~~---~~~~~~~E~~~~~~----~~~~h~~Ki~~l~saMr~fa~~L~~~G~~v~y~~~~ 89 (522)
T 3zxs_A 17 RLILVLGDQLSDDLPALRAADPA---ADLVVMAEVMEEGT----YVPHHPQKIALILAAMRKFARRLQERGFRVAYSRLD 89 (522)
T ss_dssp CEEECCTTCCCTTCHHHHTCCTT---TCEEEEECCHHHHH----SSCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred eeEEeecccCCCccchhhhcCCC---CCEEEEEEechHhc----cCCcHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 48999999999999999654222 23566676544322 2467899999999999999999999999999998
Q ss_pred -----CChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeCC-eeeeCCCCCC--CCCCCCCCh
Q 012490 204 -----GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGS-TLYHLDDLPF--KLGEMPTNY 275 (462)
Q Consensus 204 -----G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~-~L~~p~~i~~--~~~~~~~~f 275 (462)
|++.++|.++++++++++|+++ +|++.++|++|++. ||+++.+++. .|++++++.. +.+++|.+
T Consensus 90 ~~~~~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~----gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~m- 161 (522)
T 3zxs_A 90 DPDTGPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM----PLPVRFLPDDRFLCPADEFARWTEGRKQLRM- 161 (522)
T ss_dssp CTTCCSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS----SSCEEEECCCCSSSCHHHHHHHHTTCSSCCH-
T ss_pred CccccCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc----CCcEEEeCCCCcccCHHHHHHhhcCCCCeEe-
Confidence 8999999999999999999998 68889898888744 9999999997 6889888863 55667776
Q ss_pred hhHHHHHhhc-----cccccchh---hc--cCCCCCCCC------CCCCCCCCcccccCCCchhhh-ccCCCCCCCCCCc
Q 012490 276 GGFREKVKGV-----EIRKTIEA---LD--QLKGLPSRG------DVEPGDIPSLLDLGLSQSAAM-SQGGKPAANSMKG 338 (462)
Q Consensus 276 t~F~k~~~~l-----~~~~~~~~---p~--~l~~~p~~~------~~~~~~ip~l~~l~~~~~~~~-~~~~~~~~~~~~g 338 (462)
++|||.+++. ...+|+.- .+ +=++.|... ...++++. .+.+..-. ..+ ..-+......|++
T Consensus 162 e~FYR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~~~p~~~~~~~d~~~-~~v~~~v~-~~~~~~~G~~~~~~~~~ 239 (522)
T 3zxs_A 162 EWFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPLRFEPDAEV-RAVLDLVE-ARFPRHFGRLRPFHWAT 239 (522)
T ss_dssp HHHHHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCTTCCCCCCCCCCHHH-HHHHHHHH-HHCTTSSSCCCSCCCCC
T ss_pred eHHHHHHHHHhCcCCCCCCCCCCccCccccccccCCCCCCCCCCCCCCCchhH-HHHHHHHH-HhccCCcCccccCCCCC
Confidence 5999999852 21233320 00 001111110 00011000 00000000 000 0112223357999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC----CcccCchhhhcCccCHHHHHHHHHHHhhhhcccccCCCCC
Q 012490 339 GETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN----FSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 414 (462)
Q Consensus 339 GE~aA~~~L~~Fl~~~l~~Y~~~~~~~~Rns~~~~~----~TS~LSPYL~fG~ISpR~v~~~v~~~~~~~~~~~~k~~~g 414 (462)
||++|+++|++|+++++..|... ||. +..+ +||+|||||+||+||||+|++++.+......
T Consensus 240 ge~~A~~~L~~Fl~~rl~~Y~~~-----rD~-~~~~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~~~~--------- 304 (522)
T 3zxs_A 240 DRAEALRALDHFIRESLPRFGDE-----QDA-MLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGR--------- 304 (522)
T ss_dssp SHHHHHHHHHHHHHHTGGGTTTT-----TTC-CBTTBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHHTTS---------
T ss_pred CHHHHHHHHHHHHHhhhhhhhhh-----ccC-cccCCCCCCcccccHHHhCCCcCHHHHHHHHHHHHHhcC---------
Confidence 99999999999999999998764 443 3333 6999999999999999999999987654310
Q ss_pred CCCCCcchHHHHHHH-HHHHHHHHHHHhC-Ccccc-----ccccCccccccc
Q 012490 415 SGSSGAGSNWLMFEL-LWRDFFRFITKKY-SSAKK-----VVEAVPATACTG 459 (462)
Q Consensus 415 ~~~~~~~~~~~~~EL-~WREF~~~il~~~-P~~~~-----~~~~~p~~~~~~ 459 (462)
.+.++.+.|+ +|| +|||||+++++++ |++.. ..+.+|+.-|+|
T Consensus 305 -~~~~~~e~fi-rellgWREF~~~l~~~~~P~~~~~n~~~~~~~l~~~~w~G 354 (522)
T 3zxs_A 305 -APLNAVEGFI-RQILGWREYVRGIWTLSGPDYIRSNGLGHSAALPPLYWGK 354 (522)
T ss_dssp -SCHHHHHHHH-HHHHTHHHHHHHHHHHHGGGGGGCCTTCCCBCCCGGGGTC
T ss_pred -CchhhHHHHH-HHHHHHHHHHHHHHHHhCccccccccccccccchHHHhcC
Confidence 0112334455 777 5999999999986 88754 234556544544
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=89.93 E-value=2.4 Score=36.46 Aligned_cols=85 Identities=19% Similarity=0.093 Sum_probs=61.3
Q ss_pred CC-CccChHHHHHhhh----cCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEE----EE
Q 012490 133 DL-RVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV----RV 203 (462)
Q Consensus 133 DL-Rl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v----~~ 203 (462)
|. --....+|..|+. .+..|..++++++... .......-..+.|+++.+.+++.|+++.+ ..
T Consensus 32 D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~ 102 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR---------TKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRG 102 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT---------SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc---------ccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 55 4555666766653 4678999999875421 12233345567788888888989987754 24
Q ss_pred CChHHHHHHHHHHhCCCEEEEec
Q 012490 204 GKPETVLVELAKAIGADAVYAHR 226 (462)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~ 226 (462)
|++.+.|.+.+++.+++-|++-.
T Consensus 103 G~~~~~I~~~a~~~~~DLIV~G~ 125 (155)
T 3dlo_A 103 KEPPDDIVDFADEVDAIAIVIGI 125 (155)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCHHHHHHHHHHHcCCCEEEECC
Confidence 99999999999999999998865
No 15
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=88.54 E-value=3 Score=34.56 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=56.2
Q ss_pred ChHHHHHhh----hcCCceeeEEEeCCCccCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC-----cEEEEECChH
Q 012490 138 DNESLNTAN----NESVSVLPVYCFDPRDYGKS-SSGFDKTGPYRASFLIESVSDLRKNLQARGS-----DLVVRVGKPE 207 (462)
Q Consensus 138 DN~AL~~A~----~~~~~vlpVyi~dp~~~~~~-~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi-----~L~v~~G~~~ 207 (462)
...+|..|+ ..+..+..++++++...... ..++............+.++.+++.+++.|+ ...+..|++.
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~ 95 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEGSPK 95 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecChH
Confidence 455666654 34678889999886432100 0000000011223455667777777777775 4567889999
Q ss_pred HHHHHHHHHhCCCEEEEecc
Q 012490 208 TVLVELAKAIGADAVYAHRE 227 (462)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e 227 (462)
+.|.+.+++.+++-|++...
T Consensus 96 ~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 96 DKILALAKSLPADLVIIASH 115 (143)
T ss_dssp HHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999875
No 16
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=88.53 E-value=1.9 Score=36.65 Aligned_cols=88 Identities=16% Similarity=0.254 Sum_probs=58.2
Q ss_pred ccChHHHHHhh----hcCCceeeEEEeCCCccCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHhCCC---cEEEEE-
Q 012490 136 VHDNESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTGP----YRASFLIESVSDLRKNLQARGS---DLVVRV- 203 (462)
Q Consensus 136 l~DN~AL~~A~----~~~~~vlpVyi~dp~~~~~~~~g~~~~~~----~r~~Fl~esL~~L~~~L~~~Gi---~L~v~~- 203 (462)
-....+|..|. ..+..+..++++++..... +..... ....-..+.|.++.+.+++.|+ ...+..
T Consensus 28 ~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~ 103 (156)
T 3fg9_A 28 TSSERAFRYATTLAHDYDVPLGICSVLESEDINI----FDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEG 103 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeC
Confidence 34455666654 3467899999998754321 111111 1223345567777777887787 346677
Q ss_pred CChHHHHHHH-HHHhCCCEEEEecc
Q 012490 204 GKPETVLVEL-AKAIGADAVYAHRE 227 (462)
Q Consensus 204 G~~~~~L~~L-~~~~~a~~V~~~~e 227 (462)
|++.+.|.+. +++.+++-|+....
T Consensus 104 g~~~~~I~~~~a~~~~~DlIV~G~~ 128 (156)
T 3fg9_A 104 GDVDDVILEQVIPEFKPDLLVTGAD 128 (156)
T ss_dssp SCHHHHHHHTHHHHHCCSEEEEETT
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCC
Confidence 9999999998 99999999998764
No 17
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=88.01 E-value=4.8 Score=33.69 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=63.4
Q ss_pred CCCccChHHHHHhhh----cCCceeeEEEeCCCccCC-CCCCCC--CCCHHHHHHHHHHHHHHHHHHHhCCC---cEEEE
Q 012490 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGK-SSSGFD--KTGPYRASFLIESVSDLRKNLQARGS---DLVVR 202 (462)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~-~~~g~~--~~~~~r~~Fl~esL~~L~~~L~~~Gi---~L~v~ 202 (462)
|.--....+|.+|+. .+..|..++++++..... ...+.. ...........++.+.|++-.++.|+ ...+.
T Consensus 14 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (150)
T 3tnj_A 14 DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLV 93 (150)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEe
Confidence 444445667766653 467888999988643210 000000 01112223333444444444444454 47888
Q ss_pred ECChHHHHHHHHHHhCCCEEEEeccC-CchHHHHHHHHHHHhhhcCCeEEEE
Q 012490 203 VGKPETVLVELAKAIGADAVYAHREV-SHDEVKSEEKIEAAMKDEGIEVKYF 253 (462)
Q Consensus 203 ~G~~~~~L~~L~~~~~a~~V~~~~ey-~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (462)
.|++.+.|.+.+++.+++-|++-..- .....-.--...+.+...+++|-.+
T Consensus 94 ~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 94 WGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEE
T ss_pred cCCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEE
Confidence 99999999999999999999887532 1111000111233445556777654
No 18
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=87.64 E-value=3 Score=34.77 Aligned_cols=90 Identities=11% Similarity=0.169 Sum_probs=60.1
Q ss_pred CCCccChHHHHHhhh----cCCceeeEEEeCCCccCCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHHhCCC---c
Q 012490 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTG-------PYRASFLIESVSDLRKNLQARGS---D 198 (462)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~~~~g~~~~~-------~~r~~Fl~esL~~L~~~L~~~Gi---~ 198 (462)
|.--....+|..|+. .+..+..++++++...... ..+ .....-..+.|..+.+.+.+.|+ .
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~ 87 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTP-----ALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPNLK 87 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc-----ccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceE
Confidence 444455667766653 4678889999886543210 000 11123344566777777777777 5
Q ss_pred EEEEECChHHHHHH-HHHHhCCCEEEEecc
Q 012490 199 LVVRVGKPETVLVE-LAKAIGADAVYAHRE 227 (462)
Q Consensus 199 L~v~~G~~~~~L~~-L~~~~~a~~V~~~~e 227 (462)
..+..|++.+.|.+ .+++.+++-|++...
T Consensus 88 ~~~~~g~~~~~I~~~~a~~~~~dliV~G~~ 117 (146)
T 3s3t_A 88 TEISYGIPKHTIEDYAKQHPEIDLIVLGAT 117 (146)
T ss_dssp EEEEEECHHHHHHHHHHHSTTCCEEEEESC
T ss_pred EEEecCChHHHHHHHHHhhcCCCEEEECCC
Confidence 57788999999999 999999999998753
No 19
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=85.23 E-value=3.3 Score=35.69 Aligned_cols=122 Identities=9% Similarity=0.071 Sum_probs=68.0
Q ss_pred CCCccChHHHHHhhh----cCCceeeEEEeCCCccCCCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHHhCCC
Q 012490 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFD-----------KTGPYRASFLIESVSDLRKNLQARGS 197 (462)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~~~~g~~-----------~~~~~r~~Fl~esL~~L~~~L~~~Gi 197 (462)
|.--....+|.+|+. .+..|..++++++........++. ........-..+.|+++.+.+++.|+
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 92 (170)
T 2dum_A 13 DFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFR 92 (170)
T ss_dssp CSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444445567777753 356788888887643210000110 01111122334556666666766676
Q ss_pred cE----EEEECChHHHHHHHHHHhCCCEEEEeccCC-chHHH-HHHHHHHHhhhcCCeEEEEe
Q 012490 198 DL----VVRVGKPETVLVELAKAIGADAVYAHREVS-HDEVK-SEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 198 ~L----~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~-p~e~~-rd~~v~~~l~~~gI~v~~~~ 254 (462)
+. .+..|++.+.|.+.+++.+++-|++...-. ..... .--...+.+...+++|-.+.
T Consensus 93 ~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~ 155 (170)
T 2dum_A 93 AKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK 155 (170)
T ss_dssp CSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred ceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence 43 567899999999999999999999876421 11110 11123334455567777653
No 20
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=83.97 E-value=8 Score=31.98 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=60.3
Q ss_pred CCCccChHHHHHhh----hcCCceeeEEEeCCCc-cCCCC----CC-CCCCCHHHHHHHHHHHHHHHHHHHhCCC-----
Q 012490 133 DLRVHDNESLNTAN----NESVSVLPVYCFDPRD-YGKSS----SG-FDKTGPYRASFLIESVSDLRKNLQARGS----- 197 (462)
Q Consensus 133 DLRl~DN~AL~~A~----~~~~~vlpVyi~dp~~-~~~~~----~g-~~~~~~~r~~Fl~esL~~L~~~L~~~Gi----- 197 (462)
|.--....+|.+|+ ..+..+..++++++.. +.... .+ ..........-..+.|..+.+.+++.|+
T Consensus 10 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~ 89 (147)
T 3hgm_A 10 DGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKV 89 (147)
T ss_dssp CSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCccce
Confidence 33333445666654 3467888999988643 10000 00 0011122234455677888888888885
Q ss_pred cEEEEECChHHHHHHHHHHhCCCEEEEecc
Q 012490 198 DLVVRVGKPETVLVELAKAIGADAVYAHRE 227 (462)
Q Consensus 198 ~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e 227 (462)
...+..|++.+.|.+.+++.+++-|++...
T Consensus 90 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 119 (147)
T 3hgm_A 90 RAFVKGGRPSRTIVRFARKRECDLVVIGAQ 119 (147)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCSEEEECSS
T ss_pred EEEEecCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 456678999999999999999999998653
No 21
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=80.83 E-value=3.1 Score=36.11 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=63.6
Q ss_pred CCCccChHHHHHhhh---cCCceeeE--EEeCCCcc-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCc---EEEEE
Q 012490 133 DLRVHDNESLNTANN---ESVSVLPV--YCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSD---LVVRV 203 (462)
Q Consensus 133 DLRl~DN~AL~~A~~---~~~~vlpV--yi~dp~~~-~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~---L~v~~ 203 (462)
|.--....+|..|++ .+..|..+ +++++..+ .....+..........-..+-|.++.+.+.+.|++ ..+..
T Consensus 25 D~s~~s~~al~~A~~lA~~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~ 104 (163)
T 1tq8_A 25 DGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIV 104 (163)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 444444556666543 45567777 77765332 10000000000000011234566777777777877 45678
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccC-CchHHHH-HHHHHHHhhhcCCeEEEE
Q 012490 204 GKPETVLVELAKAIGADAVYAHREV-SHDEVKS-EEKIEAAMKDEGIEVKYF 253 (462)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~ey-~p~e~~r-d~~v~~~l~~~gI~v~~~ 253 (462)
|++.+.|.+.+++.+++-|++-..- ....... --...+.+....++|-.+
T Consensus 105 G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 105 GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEE
Confidence 9999999999999999999987642 2221111 112233444556777754
No 22
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=80.14 E-value=3 Score=39.51 Aligned_cols=97 Identities=20% Similarity=0.113 Sum_probs=55.1
Q ss_pred HHHHHhhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEE--CC---hHHHHHHHH
Q 012490 140 ESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV--GK---PETVLVELA 214 (462)
Q Consensus 140 ~AL~~A~~~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v~~--G~---~~~~L~~L~ 214 (462)
.+++.|.+.|..|++++..-+.... +..|--..+...+..-+.+|++++++. |. -.+.+.+++
T Consensus 19 ~al~~l~~~G~eV~~L~~~~~~~~~------------s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l 86 (237)
T 3rjz_A 19 YALYWAIKNRFSVKFLVTMVSENEE------------SYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVL 86 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEECC--------------------CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEEEEcCCCCC------------ccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHH
Confidence 4666677778778777544222110 111111112334444566799999875 32 456677777
Q ss_pred HHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEE
Q 012490 215 KAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (462)
Q Consensus 215 ~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~ 251 (462)
++.+++.|++-.=...+.+.| +++.|.+.|++..
T Consensus 87 ~~~~i~~vv~Gdi~s~yqr~r---~e~vc~~~gl~~~ 120 (237)
T 3rjz_A 87 SGLKIQGIVAGALASKYQRKR---IEKVAKELGLEVY 120 (237)
T ss_dssp TTSCCSEEECC---CCSHHHH---HHHHHHHTTCEEE
T ss_pred HhcCCcEEEECCcchHHHHHH---HHHHHHHcCCEEE
Confidence 888999998877656665555 4555666677665
No 23
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=76.00 E-value=18 Score=29.57 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCCccChHHHHHhhh----cCCceeeEEEeCCCccCCCCCCC-C-CCCHHHHHHHHHHHHHHHHHHHhCCC---cEEEEE
Q 012490 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGF-D-KTGPYRASFLIESVSDLRKNLQARGS---DLVVRV 203 (462)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~~~~g~-~-~~~~~r~~Fl~esL~~L~~~L~~~Gi---~L~v~~ 203 (462)
|.--....+|..|+. .+..+..++++++..... .++ . ........-..+.|+.+.+. .|+ ...+..
T Consensus 10 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~ 84 (137)
T 2z08_A 10 DGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYL--GEPFFEEALRRRLERAEGVLEEARAL---TGVPKEDALLLE 84 (137)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHH---HCCCGGGEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccc--cccchHHHHHHHHHHHHHHHHHHHHH---cCCCccEEEEEe
Confidence 333344456666542 467888899987532110 000 0 00000111122223333222 455 567889
Q ss_pred CChHHHHHHHHHHhCCCEEEEecc
Q 012490 204 GKPETVLVELAKAIGADAVYAHRE 227 (462)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~e 227 (462)
|++.+.|.+.+++.+++-|++...
T Consensus 85 g~~~~~I~~~a~~~~~dliV~G~~ 108 (137)
T 2z08_A 85 GVPAEAILQAARAEKADLIVMGTR 108 (137)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEESS
T ss_pred cCHHHHHHHHHHHcCCCEEEECCC
Confidence 999999999999999999998754
No 24
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=73.00 E-value=15 Score=32.65 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEe
Q 012490 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (462)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~ 225 (462)
+.++.++-+.|++.|+++.|..+.+...+..+++.+|+..++.+
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~ 137 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIAT 137 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEc
Confidence 55677888889999999999999999999999999999877654
No 25
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=71.55 E-value=32 Score=28.04 Aligned_cols=116 Identities=14% Similarity=0.025 Sum_probs=64.6
Q ss_pred CCCccChHHHHHhhh----cCCceeeEEEeCC-CccCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHhCCCc---EE
Q 012490 133 DLRVHDNESLNTANN----ESVSVLPVYCFDP-RDYGKSSSGFDKTGPYRASF----LIESVSDLRKNLQARGSD---LV 200 (462)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vlpVyi~dp-~~~~~~~~g~~~~~~~r~~F----l~esL~~L~~~L~~~Gi~---L~ 200 (462)
|.--....+|..|.. .+..+..++++++ ..... ++ .......+ ..++.+.|++.+++.|++ ..
T Consensus 10 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (141)
T 1jmv_A 10 DLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYT---GL--IDVNMSSMQDRISTETQKALLDLAESVDYPISEKL 84 (141)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCC---CC--EEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEE
T ss_pred cCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhc---cc--cccchHHHHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 444444566766653 4667888888832 11110 00 00000000 112233344444455664 46
Q ss_pred EEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 201 VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 201 v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
+..|++.+.|.+.+++.+++-|++... .....+.--...+.+...++++-.+.
T Consensus 85 ~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 85 SGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp EEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EecCCHHHHHHHHHHhcCCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEee
Confidence 778999999999999999999998876 33222233334445566677777553
No 26
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=69.93 E-value=73 Score=29.85 Aligned_cols=115 Identities=10% Similarity=0.044 Sum_probs=68.8
Q ss_pred hHHHHHhh----hc--CCceeeEEEeCCCccCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHhCCC---cEEEEECChH
Q 012490 139 NESLNTAN----NE--SVSVLPVYCFDPRDYGKSSSGFDKTG--PYRASFLIESVSDLRKNLQARGS---DLVVRVGKPE 207 (462)
Q Consensus 139 N~AL~~A~----~~--~~~vlpVyi~dp~~~~~~~~g~~~~~--~~r~~Fl~esL~~L~~~L~~~Gi---~L~v~~G~~~ 207 (462)
..+|..|. .. +..|..++++++...... .+..... ........+..+.|++-+++.|+ ..++..|++.
T Consensus 177 ~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~ 255 (319)
T 3olq_A 177 LKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIA-IELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLPE 255 (319)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCC-TTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCcchhhh-ccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCcH
Confidence 55666654 24 678889999886543210 0000111 12223344455556666667775 5788899999
Q ss_pred HHHHHHHHHhCCCEEEEecc-CCchHHH-HHHHHHHHhhhcCCeEEEEe
Q 012490 208 TVLVELAKAIGADAVYAHRE-VSHDEVK-SEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 208 ~~L~~L~~~~~a~~V~~~~e-y~p~e~~-rd~~v~~~l~~~gI~v~~~~ 254 (462)
+.|.+++++.+++-|++-.. -...... .--..++.+....++|-.+.
T Consensus 256 ~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~ 304 (319)
T 3olq_A 256 QVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIK 304 (319)
T ss_dssp HHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEEC
Confidence 99999999999999988753 2222222 22334445566677777654
No 27
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=69.45 E-value=32 Score=27.88 Aligned_cols=88 Identities=8% Similarity=0.037 Sum_probs=52.4
Q ss_pred cChHHHHHhhh-----cCCceeeEEEeCCCccCCCCCCCC--CCCHHHH-HHHHHHHHHHHHHHHhCCCc--EEEEECCh
Q 012490 137 HDNESLNTANN-----ESVSVLPVYCFDPRDYGKSSSGFD--KTGPYRA-SFLIESVSDLRKNLQARGSD--LVVRVGKP 206 (462)
Q Consensus 137 ~DN~AL~~A~~-----~~~~vlpVyi~dp~~~~~~~~g~~--~~~~~r~-~Fl~esL~~L~~~L~~~Gi~--L~v~~G~~ 206 (462)
....+|..|+. .+..+..++++++...... .+.. ....... .-..+.|+.+.+.+.+.|++ ..+..|++
T Consensus 13 ~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~g~~ 91 (138)
T 3idf_A 13 ACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE-AVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGINPFVVIKEGEP 91 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEESCH
T ss_pred HHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc-cccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCh
Confidence 34455655542 3557888999886432100 0000 0000001 23345567777777777766 56778999
Q ss_pred HHHHHHHHHHhCCCEEEEecc
Q 012490 207 ETVLVELAKAIGADAVYAHRE 227 (462)
Q Consensus 207 ~~~L~~L~~~~~a~~V~~~~e 227 (462)
.+.|.+.++ +++-|++...
T Consensus 92 ~~~I~~~a~--~~dliV~G~~ 110 (138)
T 3idf_A 92 VEMVLEEAK--DYNLLIIGSS 110 (138)
T ss_dssp HHHHHHHHT--TCSEEEEECC
T ss_pred HHHHHHHHh--cCCEEEEeCC
Confidence 999999988 8999888653
No 28
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=69.09 E-value=28 Score=32.61 Aligned_cols=110 Identities=8% Similarity=0.013 Sum_probs=60.2
Q ss_pred hHHHHHhh----hcCCceeeEEEeCCCccCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHhCCC---cEEEEECChHHHH
Q 012490 139 NESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTG-PYRASFLIESVSDLRKNLQARGS---DLVVRVGKPETVL 210 (462)
Q Consensus 139 N~AL~~A~----~~~~~vlpVyi~dp~~~~~~~~g~~~~~-~~r~~Fl~esL~~L~~~L~~~Gi---~L~v~~G~~~~~L 210 (462)
..+|..|. ..+..+..++++++...... ... ........+..+.|++-+++.|+ ...+..|++.+.|
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I 229 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLSSA-----DPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLI 229 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC--------------CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCcccccc-----CchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHH
Confidence 55666664 24678888999886433210 000 11122223334444444455565 5688899999999
Q ss_pred HHHHHHhCCCEEEEeccC-CchHH-HHHHHHHHHhhhcCCeEEEE
Q 012490 211 VELAKAIGADAVYAHREV-SHDEV-KSEEKIEAAMKDEGIEVKYF 253 (462)
Q Consensus 211 ~~L~~~~~a~~V~~~~ey-~p~e~-~rd~~v~~~l~~~gI~v~~~ 253 (462)
.+++++.+++-|++-..- ..... -.--...+.+....++|-.+
T Consensus 230 ~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv 274 (290)
T 3mt0_A 230 PRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVL 274 (290)
T ss_dssp HHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEE
T ss_pred HHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEE
Confidence 999999999999886531 11111 01122334445556776653
No 29
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=66.15 E-value=68 Score=29.82 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=67.5
Q ss_pred CCCccChHHHHHhhh----cCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcE--EEEECCh
Q 012490 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDL--VVRVGKP 206 (462)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L--~v~~G~~ 206 (462)
|..-....+|..|.. .+.+|..+++.++.. -.+.++++.+.|++.|++. .+..|++
T Consensus 178 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------------------~~~~l~~~~~~l~~~~~~~~~~~~~g~~ 239 (294)
T 3loq_A 178 DFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------------------KTADLRVMEEVIGAEGIEVHVHIESGTP 239 (294)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------------------CHHHHHHHHHHHHHTTCCEEEEEECSCH
T ss_pred CCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------------------HHHHHHHHHHHHHHcCCcEEEEEecCCH
Confidence 666666677777653 456788888887521 1234677777888888764 4567999
Q ss_pred HHHHHHHHHHhCCCEEEEecc-CCchHHH-HHHHHHHHhhhcCCeEEEE
Q 012490 207 ETVLVELAKAIGADAVYAHRE-VSHDEVK-SEEKIEAAMKDEGIEVKYF 253 (462)
Q Consensus 207 ~~~L~~L~~~~~a~~V~~~~e-y~p~e~~-rd~~v~~~l~~~gI~v~~~ 253 (462)
.+.|.+++++.+++-|++... ....... .--..++.+....+++-.+
T Consensus 240 ~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 240 HKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEE
Confidence 999999999999999888653 2222211 1222344555667777654
No 30
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=65.09 E-value=18 Score=31.72 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=51.5
Q ss_pred HHHHHHHHHH----hCCCcEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHhhhcCCeEEEEeCC
Q 012490 184 SVSDLRKNLQ----ARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256 (462)
Q Consensus 184 sL~~L~~~L~----~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~ 256 (462)
+|+++.+.|+ +.|+.+.+++-+.+-.|.+.+.+. +++.|+.|. .|++..+.. +.++..-++++.+++-.
T Consensus 33 Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAl----rDAl~~~~~P~VEVHiS 108 (153)
T 3lwz_A 33 TLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVAL----RDALLGVQIPFIEIHLS 108 (153)
T ss_dssp CHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHH----HHHHHHHTCCEEEEESS
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHH----HHHHHhcCCCEEEEEcC
Confidence 3444444444 479999999988887777776653 467788885 677777654 44455568999998776
Q ss_pred eeeeCC
Q 012490 257 TLYHLD 262 (462)
Q Consensus 257 ~L~~p~ 262 (462)
.++..+
T Consensus 109 Ni~aRE 114 (153)
T 3lwz_A 109 NVHARE 114 (153)
T ss_dssp CGGGSC
T ss_pred Cccccc
Confidence 665544
No 31
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=64.23 E-value=21 Score=31.79 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=49.1
Q ss_pred HhCCCcEEEEECChHHHHHHHHHHh---CCCEEEEec-cCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCCC
Q 012490 193 QARGSDLVVRVGKPETVLVELAKAI---GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL 264 (462)
Q Consensus 193 ~~~Gi~L~v~~G~~~~~L~~L~~~~---~a~~V~~~~-ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~i 264 (462)
.+.|+.+.+++-+.+-.|.+.+.+. +++.|+.|. .|+...+. ++.++..-++++.+++-..++..+.+
T Consensus 55 ~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSvA----lrDAL~~v~~P~VEVHiSNihaRE~F 126 (167)
T 3kip_A 55 KNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSVG----IRDALLGTAIPFIEVHITNVHQREPF 126 (167)
T ss_dssp TCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCHH----HHHHHHHTTCCEEEEESSCGGGSCGG
T ss_pred ccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccHH----HHHHHHhcCCCEEEEEcCCccccccc
Confidence 3468999999988887777766543 478888885 67777664 45556667899999887777665543
No 32
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=63.73 E-value=29 Score=30.44 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHh----CCCcEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHhhhcCCeEEEEeC
Q 012490 183 ESVSDLRKNLQA----RGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 183 esL~~L~~~L~~----~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-ey~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (462)
.+|+++.+.|++ .|+.+.+++-+.+-.|.+.+.+. +++.|+.|. .|++..+.....++. +..-++++..++-
T Consensus 29 ~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~-l~~~~~P~VEVHi 107 (151)
T 3u80_A 29 QDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHM-VIDENLPLMEVHI 107 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHH-HHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHH-HhhcCCCEEEEEc
Confidence 456666666654 69999999988777766665542 366787774 788887764333321 4446899999876
Q ss_pred CeeeeCC
Q 012490 256 STLYHLD 262 (462)
Q Consensus 256 ~~L~~p~ 262 (462)
..++.++
T Consensus 108 SNi~aRE 114 (151)
T 3u80_A 108 SNPSARD 114 (151)
T ss_dssp SCCC---
T ss_pred CCccccc
Confidence 6665443
No 33
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=61.66 E-value=18 Score=32.27 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred HHHHHHHHHH----hCCCcEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHhhhcCCeEEEEeCC
Q 012490 184 SVSDLRKNLQ----ARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256 (462)
Q Consensus 184 sL~~L~~~L~----~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~ 256 (462)
+|+++.+.|+ +.|+.+.+++-+.+-.|.+.+.+. +++.|+.|. .|+...+. ++.++..-++++.+++-.
T Consensus 54 TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSvA----lrDAL~~v~~P~VEVHiS 129 (172)
T 3n8k_A 54 THDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVA----LRDACAELSAPLIEVHIS 129 (172)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHH----HHHHHTTCCSCEEEEESS
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHH----HHHHHHhCCCCEEEEEcC
Confidence 3444444444 579999999988877776666542 367788874 67777664 566677778999998766
Q ss_pred eeeeCC
Q 012490 257 TLYHLD 262 (462)
Q Consensus 257 ~L~~p~ 262 (462)
.++..+
T Consensus 130 NihaRE 135 (172)
T 3n8k_A 130 NVHARE 135 (172)
T ss_dssp CTTSSC
T ss_pred Cchhcc
Confidence 665544
No 34
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=60.75 E-value=87 Score=29.08 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=67.9
Q ss_pred cChHHHHHhh----hcCCceeeEEEeCCCccCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHhCCCcEEE---E-ECC
Q 012490 137 HDNESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTG---PYRASFLIESVSDLRKNLQARGSDLVV---R-VGK 205 (462)
Q Consensus 137 ~DN~AL~~A~----~~~~~vlpVyi~dp~~~~~~~~g~~~~~---~~r~~Fl~esL~~L~~~L~~~Gi~L~v---~-~G~ 205 (462)
....+|.+|+ ..+..|..++++++........+. ... .....-..+.|+++.+.+++.|++... . .|+
T Consensus 34 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~ 112 (294)
T 3loq_A 34 NSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGI-DIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGD 112 (294)
T ss_dssp GGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CC-CTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSSCCEEC
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEeeccCC
Confidence 3344444443 456788888888764432111110 111 112234456677888888888988765 4 799
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCchHHH--HHHHHHHHhhhcCCeEEEEeC
Q 012490 206 PETVLVELAKAIGADAVYAHREVSHDEVK--SEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 206 ~~~~L~~L~~~~~a~~V~~~~ey~p~e~~--rd~~v~~~l~~~gI~v~~~~~ 255 (462)
+.+.| .+++.+++-|++...-.....+ .-....+.+...++++..+..
T Consensus 113 ~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~ 162 (294)
T 3loq_A 113 PVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKH 162 (294)
T ss_dssp HHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECC
T ss_pred hhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecC
Confidence 99998 8899999999987643222111 112234455666788876543
No 35
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=58.31 E-value=20 Score=30.17 Aligned_cols=95 Identities=17% Similarity=0.256 Sum_probs=57.5
Q ss_pred CCCccChHHHHHhhh----cCCceeeEEEeCCCccCC-CCCCCC--C--C-CH-------H---HHHHHHHHHHHHHHHH
Q 012490 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGK-SSSGFD--K--T-GP-------Y---RASFLIESVSDLRKNL 192 (462)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~-~~~g~~--~--~-~~-------~---r~~Fl~esL~~L~~~L 192 (462)
|.--....+|.+|++ .+..|..++++++..... ...++. . . .. . ...-..+.|.++.+.+
T Consensus 13 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (162)
T 1mjh_A 13 DFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL 92 (162)
T ss_dssp CSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445567777764 356788889987541000 000000 0 0 10 0 0122344566777777
Q ss_pred HhCCCcE--EEEECChHHHHHHHHHHhCCCEEEEecc
Q 012490 193 QARGSDL--VVRVGKPETVLVELAKAIGADAVYAHRE 227 (462)
Q Consensus 193 ~~~Gi~L--~v~~G~~~~~L~~L~~~~~a~~V~~~~e 227 (462)
...|++. .+..|++.+.|.+.+++.+++-|++...
T Consensus 93 ~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~ 129 (162)
T 1mjh_A 93 EDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSH 129 (162)
T ss_dssp HHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESC
T ss_pred HHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCC
Confidence 7788764 4667999999999999999999988754
No 36
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=56.01 E-value=62 Score=27.46 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCcE--EEEECChHHHHHHHHHHhCCCEEEEeccC-CchHHH-HHHHHHHHhhhcCCeEEEEe
Q 012490 182 IESVSDLRKNLQARGSDL--VVRVGKPETVLVELAKAIGADAVYAHREV-SHDEVK-SEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L--~v~~G~~~~~L~~L~~~~~a~~V~~~~ey-~p~e~~-rd~~v~~~l~~~gI~v~~~~ 254 (462)
.+.|..+.+.+.+.|+.. .+..|++.+.|.+.+++.+++-|++...- ...... .--...+.+...+++|-.+.
T Consensus 86 ~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~ 162 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162 (175)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEc
Confidence 345666666777778765 46689999999999999999999987642 211111 11223344555678887654
No 37
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=54.86 E-value=67 Score=27.83 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=51.0
Q ss_pred HHHHHhCCCcEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCC
Q 012490 189 RKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263 (462)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~ 263 (462)
++.-.+.|+.+.+++-+.+-.|.+.+.+. +.+.|+.|. .|++..+. ++.++..-++++.+++-..++..+.
T Consensus 35 ~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvA----lrDAl~~v~~P~VEVHiSNi~aRE~ 108 (143)
T 1gqo_A 35 FQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYA----IRDAVSSISLPVVEVHLSNLYAREE 108 (143)
T ss_dssp HHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHH----HHHHHHTSCSCEEEEESSCGGGSCG
T ss_pred HHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHH----HHHHHHhCCCCEEEEEecCcccccc
Confidence 33334569999999988887777766554 467788884 67777664 5666677789999988777666553
No 38
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=54.78 E-value=81 Score=27.49 Aligned_cols=72 Identities=15% Similarity=0.063 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCcEEEEECChHHHHHHHHHHhC---CCEEEEec-cCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCC
Q 012490 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIG---ADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (462)
Q Consensus 187 ~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~---a~~V~~~~-ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~ 262 (462)
.+++.-.+.|+.+.+++-+.+-.|.+.+.+.. .+.|+.|. .|++..+. ++.++..-++++..++-..++..+
T Consensus 32 ~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvA----lrDAl~~v~~P~VEVHiSNi~aRE 107 (149)
T 2uyg_A 32 LCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYA----LLDAIRAQPLPVVEVHLTNLHARE 107 (149)
T ss_dssp HHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHH----HHHHHHTSCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHH----HHHHHHhCCCCEEEEEecCccccc
Confidence 33444456799999999998877777776542 66788885 67777774 566677779999998877666544
No 39
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=51.16 E-value=24 Score=31.56 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=39.3
Q ss_pred HHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCC
Q 012490 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (462)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI 248 (462)
+.|++.|+++.|..|+....+..++++.|+..++.... +. ...+..++++.|+
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k--~k----~~~~~~~~~~~~~ 114 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQGQD--DK----VQAYYDICQKLAI 114 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSCS--SH----HHHHHHHHHHHCC
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCCC--Cc----HHHHHHHHHHhCC
Confidence 45677899999999999999999999999998876442 22 2234555565565
No 40
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=51.12 E-value=63 Score=28.32 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCcEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCC
Q 012490 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (462)
Q Consensus 187 ~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~ 262 (462)
.+++.-.++|+.+.+++-+.+-.|.+.+.+. +++.|+.|. .|++..+. ++.++..-++++..++-..++..+
T Consensus 34 ~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvA----lrDAl~~v~~P~VEVHiSNi~aRE 108 (154)
T 1uqr_A 34 HLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVA----IRDALLAVSIPFIEVHLSNVHARE 108 (154)
T ss_dssp HHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHH----HHHHHHHHTCCEEEEESSCGGGSC
T ss_pred HHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHH----HHHHHHhCCCCEEEEEecCccccc
Confidence 3344445679999999999887777777654 467788885 56666554 455556668999998766665544
No 41
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=49.78 E-value=71 Score=27.75 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=50.4
Q ss_pred HHHHHHhCCCcEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCC
Q 012490 188 LRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263 (462)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~ 263 (462)
+++.-.+.|+.+.+++-+.+-.|.+.+.+. +.+.|+.|. .|++..+. ++.++..-++++.+++-..++..+.
T Consensus 36 l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvA----lrDAl~~v~~P~VEVHiSNi~aRE~ 110 (146)
T 1h05_A 36 IEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVA----LRDACAELSAPLIEVHISNVHAREE 110 (146)
T ss_dssp HHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHH----HHHHHHTCCSCEEEEESSCGGGSCG
T ss_pred HHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHH----HHHHHHhCCCCEEEEEecCcccccc
Confidence 333445679999999988876666665443 366777774 67777664 5666777799999988777665553
No 42
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=49.56 E-value=27 Score=30.76 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=41.0
Q ss_pred HHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCC
Q 012490 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (462)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI 248 (462)
+=+.|++.|+++.|..|+....+..++++.|+..++.... + . -+.+...+++.|+
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~~--~--K--~~~~~~~~~~~g~ 108 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGRE--D--K--LVVLDKLLAELQL 108 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSCS--C--H--HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCcC--C--h--HHHHHHHHHHcCC
Confidence 4456788899999999999999999999999998876541 1 1 1345566666665
No 43
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=49.16 E-value=93 Score=29.56 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEC--ChH---HHHHHHHHH-hCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEE
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKA-IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~-~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~ 252 (462)
.|+.+-+..+++.++++|..+.+... +.. +.+..+++. .+++.|++..+. .. ...+.+.+.+.||++..
T Consensus 17 ~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~--~~---~~~~~~~~~~~giPvV~ 91 (350)
T 3h75_A 17 TFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ--YV---APQILRLSQGSGIKLFI 91 (350)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS--SH---HHHHHHHHTTSCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch--hh---HHHHHHHHHhCCCcEEE
Confidence 45666677778888888999998864 332 345566665 689998885421 11 12234456678999998
Q ss_pred EeCCe
Q 012490 253 FWGST 257 (462)
Q Consensus 253 ~~~~~ 257 (462)
++...
T Consensus 92 ~~~~~ 96 (350)
T 3h75_A 92 VNSPL 96 (350)
T ss_dssp EESCC
T ss_pred EcCCC
Confidence 87543
No 44
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=48.91 E-value=66 Score=27.79 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=56.7
Q ss_pred ceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEE-------------CChHHHHHHHHHHh
Q 012490 151 SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV-------------GKPETVLVELAKAI 217 (462)
Q Consensus 151 ~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v~~-------------G~~~~~L~~L~~~~ 217 (462)
-++|-|+++.-+..+ +.+..+-+.=++-|+.|++.-.+.++++.+.. |.....|.+++++.
T Consensus 32 iiIP~~Vl~EL~~~a------~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~ 105 (142)
T 3i8o_A 32 IIIPEAVVSELEYQA------NMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKET 105 (142)
T ss_dssp EEEEHHHHHHHHHHH------TTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHT
T ss_pred EEehHHHHHHHHHHH------HccchhhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHh
Confidence 466888876533321 12334555666777777765567789998874 34567799999998
Q ss_pred CCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 218 GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 218 ~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
++. |++ .| ..+.+.++..||++....
T Consensus 106 ~a~-lvT-nD---------~~l~kvA~~~GI~V~~l~ 131 (142)
T 3i8o_A 106 NSI-LLT-SD---------WIQYNLAKAQGIEAYFLE 131 (142)
T ss_dssp TCE-EEE-SC---------HHHHHHHHHTTCCEEECC
T ss_pred CCE-EEc-CC---------HHHHHHHHHcCCEEEEec
Confidence 853 333 32 356666777899998643
No 45
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=48.41 E-value=23 Score=30.76 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=38.6
Q ss_pred HHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCC
Q 012490 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (462)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI 248 (462)
+=+.|++.|+++.|..|+....+..+++..|+. ++... .+. -..+...+++.|+
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~--~~k----~~~l~~~~~~~~~ 100 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-VLHGI--DRK----DLALKQWCEEQGI 100 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESC--SCH----HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCC--CCh----HHHHHHHHHHcCC
Confidence 445678889999999999999999999999999 55433 222 2234555555564
No 46
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=47.96 E-value=1e+02 Score=27.55 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCcEEEE-E-CChHHHHHHHHHHh--CCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeC
Q 012490 183 ESVSDLRKNLQARGSDLVVR-V-GKPETVLVELAKAI--GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~-~-G~~~~~L~~L~~~~--~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (462)
+++.-++..+++.|-+++|- . |..-.+|..++.+. .+..|+++..+.+.+. .+.+++.|++.||+++.+..
T Consensus 31 ~~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~e~--~~~v~~~~~~~gi~~~v~~~ 105 (215)
T 1sur_A 31 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPET--YRFIDELTDKLKLNLKVYRA 105 (215)
T ss_dssp CHHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHHH--HHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCHHH--HHHHHHHHHHhCCcEEEEeC
Confidence 34556677777777666664 3 44456677777765 4566777766654332 45678888889999987653
No 47
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=47.34 E-value=77 Score=26.38 Aligned_cols=57 Identities=23% Similarity=0.238 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCe
Q 012490 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (462)
Q Consensus 187 ~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~ 249 (462)
++=+.|++.|+++.+..|.+...+..+++..|+..++.... |. ...+...+++.|+.
T Consensus 43 ~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~k--p~----~~~~~~~~~~~~~~ 99 (162)
T 2p9j_A 43 IGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTGSY--KK----LEIYEKIKEKYSLK 99 (162)
T ss_dssp HHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEECC----C----HHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccCCC--CC----HHHHHHHHHHcCCC
Confidence 34445677899999999998889999999999987654321 22 22344455555653
No 48
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=46.33 E-value=20 Score=32.59 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=40.9
Q ss_pred HHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCC
Q 012490 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (462)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI 248 (462)
+=+.|++.|+++.|..|++...+..++++.|+..++... .+. -..+...+++.|+
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~--k~K----~~~l~~~~~~lg~ 138 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQ--SDK----LVAYHELLATLQC 138 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC--SSH----HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhccc--CCh----HHHHHHHHHHcCc
Confidence 456778889999999999999999999999999887654 121 2245555555565
No 49
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=45.80 E-value=77 Score=30.50 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEec
Q 012490 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ 226 (462)
.++.++-+.|++.|+++.|+.+.....+..+++..|+..++.+.
T Consensus 182 pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~ 225 (317)
T 4eze_A 182 PGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNT 225 (317)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEC
T ss_pred cCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEE
Confidence 35677778889999999999999999999999999998877644
No 50
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=45.44 E-value=74 Score=26.34 Aligned_cols=52 Identities=25% Similarity=0.460 Sum_probs=32.7
Q ss_pred EEEEECChHHHHHHHHHH---hCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 199 LVVRVGKPETVLVELAKA---IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 199 L~v~~G~~~~~L~~L~~~---~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
++++..+| ++|.+++.+ .|+..|..-.+ -++.+|.++++++ +++|+.++++.
T Consensus 5 fvvfssdp-eilkeivreikrqgvrvvllysd--qdekrrrerleef-ekqgvdvrtve 59 (162)
T 2l82_A 5 FVVFSSDP-EILKEIVREIKRQGVRVVLLYSD--QDEKRRRERLEEF-EKQGVDVRTVE 59 (162)
T ss_dssp EEEEESCH-HHHHHHHHHHHHTTCEEEEEECC--SCHHHHHHHHHHH-HTTTCEEEECC
T ss_pred EEEecCCH-HHHHHHHHHHHhCCeEEEEEecC--chHHHHHHHHHHH-HHcCCceeeec
Confidence 45555665 666666654 46655544333 3667777777765 67899999754
No 51
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=45.39 E-value=35 Score=26.72 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEE-CChHHHHHHH---HHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcC
Q 012490 183 ESVSDLRKNLQARGSDLVVRV-GKPETVLVEL---AKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG 247 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~-G~~~~~L~~L---~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~g 247 (462)
+-++++-++++..|-+|+|+. |....-+.++ +++.|+.-=+. ...+|++. .++++++++-.|
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvl-kstdpeel--tqrvreflktag 103 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVL-KSTDPEEL--TQRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEE-ECCCHHHH--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhh-ccCCHHHH--HHHHHHHHHhcc
Confidence 346777788888999998874 5444444444 45556542111 23456655 568899987554
No 52
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=44.98 E-value=89 Score=28.82 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECC---hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeC
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGK---PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~---~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (462)
.|+.+-+..+++.+++.|..+.+...+ ....+.+++...+++.|++....... ...+.+.+.||++..++.
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 23 STFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC------HHHHHHHHTTCCEEEESC
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHhCCCCEEEECC
Confidence 477777888889999999999887533 33556666777789998875432222 123345667999998875
Q ss_pred C
Q 012490 256 S 256 (462)
Q Consensus 256 ~ 256 (462)
.
T Consensus 97 ~ 97 (294)
T 3qk7_A 97 S 97 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=44.50 E-value=1.4e+02 Score=27.10 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECC--hH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGK--PE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~--~~--~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|++..... +. ..+.+.+.||++..++
T Consensus 20 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~-~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 20 YFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------PQ-TVQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------HH-HHHHHHTTSSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------HH-HHHHHHHCCCCEEEEe
Confidence 466667788889999999999988643 22 2233334456899888865332 22 3344567899999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 93 ~~ 94 (276)
T 3jy6_A 93 RE 94 (276)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 54
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=42.78 E-value=81 Score=27.72 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHhCCCcEEEEECChHHHHHHHHHHh--CCCEEEEec-cCCchHHHHHHHHHHHhhhcC-CeEEEEeCCeeeeCC
Q 012490 189 RKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEG-IEVKYFWGSTLYHLD 262 (462)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~--~a~~V~~~~-ey~p~e~~rd~~v~~~l~~~g-I~v~~~~~~~L~~p~ 262 (462)
++.-.+.|+.+.+++-+.+-.|.+.+.+. +++.|+.|. .|++..+. ++.++..-+ +++.+++-..++..+
T Consensus 41 ~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvA----lrDAl~~v~~~P~VEVHiSNi~aRE 114 (156)
T 1gtz_A 41 VKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSVA----ILDALNTCDGLPVVEVHISNIHQRE 114 (156)
T ss_dssp HHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCHH----HHHHHHTSTTCCEEEEESSCGGGSC
T ss_pred HHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHH----HHHHHHhcCCCCEEEEEecCccccc
Confidence 33334569999999988877666666443 477888885 55666554 566666667 999998766665544
No 55
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=41.74 E-value=50 Score=36.13 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=42.2
Q ss_pred HHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
+.|++.|+.+++..|+.......++++.|++.++. +..|.++.. +-+.+++.|-.+-.+.
T Consensus 564 ~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a--~~~P~~K~~---~v~~l~~~g~~V~~vG 623 (736)
T 3rfu_A 564 LELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVA--EIMPEDKSR---IVSELKDKGLIVAMAG 623 (736)
T ss_dssp HHHHHHTCEEEEECSSCHHHHHHHHHHHTCCCEEC--SCCHHHHHH---HHHHHHHHSCCEEEEE
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCCEEEE--ecCHHHHHH---HHHHHHhcCCEEEEEE
Confidence 45566799999999999999999999999998876 445665432 2333444454444443
No 56
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=41.62 E-value=76 Score=31.97 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHH--------hCCCEEEEeccCCchHHHHHHHHHHHhhhcCCe
Q 012490 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA--------IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (462)
Q Consensus 180 Fl~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~--------~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~ 249 (462)
-++.++.++=+.|++.|+.+.|..++..+.+...+++ .++..++.+.. |. -+.+.+.+++.|+.
T Consensus 256 ~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~K--PK----p~~l~~al~~Lgl~ 327 (387)
T 3nvb_A 256 KAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWE--NK----ADNIRTIQRTLNIG 327 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEESS--CH----HHHHHHHHHHHTCC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCCC--Cc----HHHHHHHHHHhCcC
Confidence 4567888888999999999999999998888888877 45555554332 22 23466677777773
No 57
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=41.47 E-value=99 Score=29.48 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEe
Q 012490 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~ 225 (462)
.+.++-+.|++.|+++.+..+........+.++.|+..++.+
T Consensus 182 g~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~~~~~ 223 (335)
T 3n28_A 182 ELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSN 223 (335)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCeEEee
Confidence 455667788899999999999888888899999999877664
No 58
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=41.19 E-value=2.1e+02 Score=26.50 Aligned_cols=121 Identities=11% Similarity=0.019 Sum_probs=70.6
Q ss_pred CCCccChHHHHHhh----hcCCceeeEEEeCCCccCCCCCCCCCCCH-HHHHH-------HHHHHHHHHHHHHhCCCcEE
Q 012490 133 DLRVHDNESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTGP-YRASF-------LIESVSDLRKNLQARGSDLV 200 (462)
Q Consensus 133 DLRl~DN~AL~~A~----~~~~~vlpVyi~dp~~~~~~~~g~~~~~~-~r~~F-------l~esL~~L~~~L~~~Gi~L~ 200 (462)
|.--....+|.+|+ ..+.+|..++++++..+... + ..+. ....+ ..+.|+++.+.++..|++..
T Consensus 15 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~ 90 (319)
T 3olq_A 15 DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMT--T--LLSPDERNAMRKGVINQKTAWIKQQARYYLEAGIQID 90 (319)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCT--T--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhc--c--ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEE
Confidence 55556667777765 35678888888764322110 0 1111 11111 23445566666666787654
Q ss_pred --EE-ECChHHHHHHHHHHhCCCEEEEeccCCch-HHH-HHHHHHHHhhhcCCeEEEEeCCe
Q 012490 201 --VR-VGKPETVLVELAKAIGADAVYAHREVSHD-EVK-SEEKIEAAMKDEGIEVKYFWGST 257 (462)
Q Consensus 201 --v~-~G~~~~~L~~L~~~~~a~~V~~~~ey~p~-e~~-rd~~v~~~l~~~gI~v~~~~~~~ 257 (462)
+. .|++.+.|.+.+++.+++-|++...-... ... ......+.+...+++|-.+....
T Consensus 91 ~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 91 IKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKE 152 (319)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSC
T ss_pred EEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcc
Confidence 44 79999999999999999999887643211 000 11223444556688888776543
No 59
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=40.58 E-value=1.2e+02 Score=26.09 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCCcEE---EEECChHHHHHHHHHHhC--CCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEE
Q 012490 182 IESVSDLRKNLQARGSDLV---VRVGKPETVLVELAKAIG--ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (462)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~---v~~G~~~~~L~~L~~~~~--a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~ 252 (462)
.+.|..--+.|+..|+... +..++|...|.+.+.+++ ++.|+.-.....-+......+.....+.|+++.-
T Consensus 57 ~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~DwasrAr~~gvPVlh 132 (138)
T 2iel_A 57 EEEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGLPVIH 132 (138)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGGGSSCEEE
T ss_pred HHHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHHHHHHhcCCCEEE
Confidence 3555555666778888765 788999999999999999 9988777654333333222334444447898864
No 60
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=40.52 E-value=1.3e+02 Score=27.36 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHHhCCCcEEEEECChHHHHHHHHHHhCCCE----E---------------EEeccCCchHHHHHHHHHHHhhhcCCeE
Q 012490 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADA----V---------------YAHREVSHDEVKSEEKIEAAMKDEGIEV 250 (462)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~----V---------------~~~~ey~p~e~~rd~~v~~~l~~~gI~v 250 (462)
++|++.|+.+.+..|.+...+..+.+..+... + +...... ...-+.+.+.+++.++.+
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGai~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 108 (279)
T 3mpo_A 32 QAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDDQYAITFNGSVAQTISGKVLTNHSLT---YEDYIDLEAWARKVRAHF 108 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTTCCSSSCEEEEGGGTEEEETTSCEEEECCCC---HHHHHHHHHHHHHTTCCE
T ss_pred HHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCCEEEEcCcEEEECCCCCEEEecCCC---HHHHHHHHHHHHHcCCeE
Confidence 44677899999999999888899998877541 1 1111111 222345667778889998
Q ss_pred EEEeCCeeee
Q 012490 251 KYFWGSTLYH 260 (462)
Q Consensus 251 ~~~~~~~L~~ 260 (462)
..+.+..++.
T Consensus 109 ~~~~~~~~~~ 118 (279)
T 3mpo_A 109 QIETPDYIYT 118 (279)
T ss_dssp EEECSSCEEE
T ss_pred EEEECCEEEE
Confidence 8777665543
No 61
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=40.44 E-value=1.4e+02 Score=27.19 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEC--Ch---HHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEE
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVG--KP---ETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G--~~---~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (462)
.|+.+-+..+++.+++.|..+.+... +. .+.+..+. ..+++.|++... +....+. ..+.+.+.||++..+
T Consensus 18 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~---~~~~~~~-~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 18 DWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLI-AQKPDAIIEQLG---NLDVLNP-WLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HHCCSEEEEESS---CHHHHHH-HHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCC---ChhhhHH-HHHHHHHCCCcEEEe
Confidence 46667778888899999999998863 33 23333333 458999887532 1112222 334456679999988
Q ss_pred eCC
Q 012490 254 WGS 256 (462)
Q Consensus 254 ~~~ 256 (462)
+..
T Consensus 93 ~~~ 95 (291)
T 3l49_A 93 DTA 95 (291)
T ss_dssp SCC
T ss_pred cCC
Confidence 654
No 62
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=39.68 E-value=1.1e+02 Score=27.38 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=48.3
Q ss_pred hCCCcEEEEECChHHHHHHHHHHh--C-CCEEEEec-cCCchHHHHHHHHHHHhhhcCCeEEEEeCCeeeeCCC
Q 012490 194 ARGSDLVVRVGKPETVLVELAKAI--G-ADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263 (462)
Q Consensus 194 ~~Gi~L~v~~G~~~~~L~~L~~~~--~-a~~V~~~~-ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~ 263 (462)
++|+.+.++.-+.+-.|.+.+.+. + ++.|+.|. .|+++.+. ++.++..-++++..++-..++..+.
T Consensus 51 ~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSvA----lrDAl~~v~~P~VEVHiSNi~aRE~ 120 (176)
T 2c4w_A 51 NLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSIA----IADAIMLAGKPVIEVHLTNIQAREE 120 (176)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCHH----HHHHHHTSSSCEEEEESSCGGGSCG
T ss_pred cCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchhccchHH----HHHHHHhCCCCEEEEEecCcccccc
Confidence 568899999988877776666543 2 67888885 67777664 5666677799999988777665553
No 63
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=38.97 E-value=70 Score=31.33 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEE
Q 012490 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVY 223 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~ 223 (462)
+-+..+++-|+..|++.++..++...++..|+++-.+..|+
T Consensus 130 ~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~ 170 (340)
T 1b43_A 130 MLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASA 170 (340)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEE
Confidence 34566777788888888888788888888888764445443
No 64
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=38.69 E-value=63 Score=28.09 Aligned_cols=38 Identities=8% Similarity=0.253 Sum_probs=31.6
Q ss_pred HHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEec
Q 012490 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226 (462)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ 226 (462)
=+.|++.|+++.|..|++...+..++++.|+..++...
T Consensus 62 l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~ 99 (188)
T 2r8e_A 62 IRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQ 99 (188)
T ss_dssp HHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecCC
Confidence 34567889999999999888899999999999876543
No 65
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=37.84 E-value=39 Score=30.63 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHH----hCCCEEEE-eccCCchHHHHHHHHHHHhhhcCCeEEE
Q 012490 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA----IGADAVYA-HREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (462)
Q Consensus 178 ~~Fl~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~----~~a~~V~~-~~ey~p~e~~rd~~v~~~l~~~gI~v~~ 252 (462)
+.+|.++...+...+ ..|..|+|-.-........+++. -|+..|++ ..+|..+.... ..-.+.|++.||+|..
T Consensus 67 ~~Ai~~a~~~l~~~~-~~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~-~~g~~~L~~aGI~V~~ 144 (190)
T 2nyt_A 67 EAFFNTILPAFDPAL-RYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEI-QAALKKLKEAGCKLRI 144 (190)
T ss_pred HHHHHHHHHhcCccc-cCCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHH-HHHHHHHHHCCCEEEE
Confidence 346655544332222 23888888655544444444433 28998877 56664222111 2344567889999985
Q ss_pred E
Q 012490 253 F 253 (462)
Q Consensus 253 ~ 253 (462)
.
T Consensus 145 ~ 145 (190)
T 2nyt_A 145 M 145 (190)
T ss_pred e
Confidence 3
No 66
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=37.68 E-value=1.1e+02 Score=30.35 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEe
Q 012490 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~ 225 (462)
++.++-+.|++.|+++.|..|.....+..+++.+|+..++.+
T Consensus 260 g~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~ 301 (415)
T 3p96_A 260 GARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAAN 301 (415)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeee
Confidence 556777888999999999999888889999999999988765
No 67
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=36.90 E-value=90 Score=26.83 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEE
Q 012490 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~ 224 (462)
.+.++-+.|++.|+++.+..+.....+..+++..|+..++.
T Consensus 79 ~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~ 119 (217)
T 3m1y_A 79 GALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFS 119 (217)
T ss_dssp THHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcchhcc
Confidence 45566677888999999999888888888889889876554
No 68
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=36.45 E-value=43 Score=27.60 Aligned_cols=45 Identities=11% Similarity=-0.018 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEE
Q 012490 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAV 222 (462)
Q Consensus 177 r~~Fl~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V 222 (462)
+... ...|.++.++++..|+.++.+..+..+.+.++++++++.--
T Consensus 39 C~~~-~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~ 83 (151)
T 3raz_A 39 CRKE-MPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYP 83 (151)
T ss_dssp HHHH-HHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSC
T ss_pred HHHH-HHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCc
Confidence 4443 45577777777667888887887778889999999987643
No 69
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=36.25 E-value=1.3e+02 Score=29.00 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHhC-------CCcEEEEECChHHHHHHHHHHhCCCEEEEe---ccCCchHHHHHHHHHHHhhhc
Q 012490 177 RASFLIESVSDLRKNLQAR-------GSDLVVRVGKPETVLVELAKAIGADAVYAH---REVSHDEVKSEEKIEAAMKDE 246 (462)
Q Consensus 177 r~~Fl~esL~~L~~~L~~~-------Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~---~ey~p~e~~rd~~v~~~l~~~ 246 (462)
+..=+.+-|.+|++++++. +-.+++.+ ..+..|++.+|.+.++.. .+-+|...+ -+++.+.+++.
T Consensus 164 Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~i~~~~ePs~~~-l~~l~~~ik~~ 238 (307)
T 3ujp_A 164 NAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTPKQ-VQTVIEEVKTN 238 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSCCSSCCCHHH-HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCEEEEEC----chHHHHHHHCCCcEEEeeccCCCCCCCHHH-HHHHHHHHHhc
Confidence 3344566788888777652 23344444 368899999999977542 233444443 35677788899
Q ss_pred CCeEEEEe
Q 012490 247 GIEVKYFW 254 (462)
Q Consensus 247 gI~v~~~~ 254 (462)
+|++..++
T Consensus 239 ~v~~If~e 246 (307)
T 3ujp_A 239 NVPTIFCE 246 (307)
T ss_dssp TCSEEEEE
T ss_pred CCcEEEEe
Confidence 99988653
No 70
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=36.16 E-value=1.5e+02 Score=27.30 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEC--------C---------------------hHHHHHHHHHHhCCCEEEEeccCCch--
Q 012490 183 ESVSDLRKNLQARGSDLVVRVG--------K---------------------PETVLVELAKAIGADAVYAHREVSHD-- 231 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G--------~---------------------~~~~L~~L~~~~~a~~V~~~~ey~p~-- 231 (462)
+.++++++.|++.|+.+..... + ..+...+++++.|+..|.++..+.+.
T Consensus 51 ~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~ 130 (290)
T 3tva_A 51 EHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGFVPESS 130 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTT
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccc
Confidence 4578999999999999887742 1 12344567788999999986543322
Q ss_pred --HH----HHHHHHHHHhhhcCCeEE
Q 012490 232 --EV----KSEEKIEAAMKDEGIEVK 251 (462)
Q Consensus 232 --e~----~rd~~v~~~l~~~gI~v~ 251 (462)
.. +.-+.+.+.+++.||.+-
T Consensus 131 ~~~~~~~~~~l~~l~~~a~~~Gv~l~ 156 (290)
T 3tva_A 131 SPDYSELVRVTQDLLTHAANHGQAVH 156 (290)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 11 112334444567788765
No 71
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=35.24 E-value=1.2e+02 Score=27.87 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEC----ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G----~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+... +....+.+++...+++.|++....... ...+.+.+.||++..++
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~ 96 (288)
T 3gv0_A 23 GFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND------PRVRFMTERNMPFVTHG 96 (288)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC------HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc------HHHHHHhhCCCCEEEEC
Confidence 36667778888899999999988752 223456666667789998875322111 12234556799999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 97 ~~ 98 (288)
T 3gv0_A 97 RS 98 (288)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 72
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=34.97 E-value=22 Score=35.72 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCC------CEEEEec
Q 012490 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA------DAVYAHR 226 (462)
Q Consensus 181 l~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a------~~V~~~~ 226 (462)
++..+.+|=+.|++.|++++|+.|...+.+..++++.|+ ++|+.++
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~~ 273 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGLR 273 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEEC
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEeE
Confidence 467889999999999999999999999999999998664 4566543
No 73
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=34.93 E-value=2.6e+02 Score=25.27 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=46.1
Q ss_pred HHHHhCCCcEEEEECChHHHHHHHHHHhCC----CEEEE----------------eccCCchHHHHHHHHHHHhhhcCCe
Q 012490 190 KNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYA----------------HREVSHDEVKSEEKIEAAMKDEGIE 249 (462)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~----------------~~ey~p~e~~rd~~v~~~l~~~gI~ 249 (462)
++|++.|+.+.+..|.+...+..++++.+. .-+++ ....... .-+.+.+.+++.++.
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGa~i~~~~~~~~~~~~~l~~~---~~~~i~~~~~~~~~~ 108 (279)
T 4dw8_A 32 IRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWESKEMMYENVLPNE---VVPVLYECARTNHLS 108 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTTGGGTTCEEEEGGGTEEEETTTCCEEEECCCCGG---GHHHHHHHHHHTTCE
T ss_pred HHHHHCCCEEEEEcCCChHHHHHHHHHhCCCCCCCEEEEeCCeEEEECCCCeEEEEecCCHH---HHHHHHHHHHHcCCE
Confidence 345677999999999999888899888875 22221 1111222 224566677888999
Q ss_pred EEEEeCCeeee
Q 012490 250 VKYFWGSTLYH 260 (462)
Q Consensus 250 v~~~~~~~L~~ 260 (462)
+..+.+..++.
T Consensus 109 ~~~~~~~~~~~ 119 (279)
T 4dw8_A 109 ILTYDGAEIVT 119 (279)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 98888777664
No 74
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=34.73 E-value=1.2e+02 Score=29.33 Aligned_cols=69 Identities=9% Similarity=0.104 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhC-------CCcEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHhhhcCCeE
Q 012490 181 LIESVSDLRKNLQAR-------GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEV 250 (462)
Q Consensus 181 l~esL~~L~~~L~~~-------Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---ey~p~e~~rd~~v~~~l~~~gI~v 250 (462)
+.+-|.+|++++++. +..+++.+ ..+..|++.+|.+.+.... +-+|...+. .++.+.+++.+|.+
T Consensus 175 ~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l-~~l~~~ik~~~v~~ 249 (313)
T 1toa_A 175 YQQQLDKLDAYVRRKAQSLPAERRVLVTAH----DAFGYFSRAYGFEVKGLQGVSTASEASAHDM-QELAAFIAQRKLPA 249 (313)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGCEEEEEE----SCCHHHHHHHTCEEEEEECSSCSSCCCHHHH-HHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHhhCCccCCEEEEEC----CcHHHHHHHCCCeEEEeeccCCCCCCCHHHH-HHHHHHHHHcCCCE
Confidence 445666666665532 44465554 3578999999998775532 334444443 45777788899988
Q ss_pred EEEe
Q 012490 251 KYFW 254 (462)
Q Consensus 251 ~~~~ 254 (462)
..++
T Consensus 250 If~e 253 (313)
T 1toa_A 250 IFIE 253 (313)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8643
No 75
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.40 E-value=2.1e+02 Score=25.87 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECC--hH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEE
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGK--PE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~--~~---~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (462)
.|+.+-+..+++.+++.|..+.+...+ .. +.+..+. ..+++.|++..... ... . .+.+.+.+.||++..+
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~-~~~--~-~~~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 21 EFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFV-HLKVDAIFITTLDD-VYI--G-SAIEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHH-HTTCSEEEEECSCT-TTT--H-HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEecCCh-HHH--H-HHHHHHHHcCCCEEEe
Confidence 466666788888999999999988643 22 2333333 46899888754321 211 1 1233455679999987
Q ss_pred eCC
Q 012490 254 WGS 256 (462)
Q Consensus 254 ~~~ 256 (462)
+..
T Consensus 96 ~~~ 98 (293)
T 3l6u_A 96 DRM 98 (293)
T ss_dssp SSC
T ss_pred cCC
Confidence 644
No 76
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=34.36 E-value=1.5e+02 Score=26.65 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECC--hH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGK--PE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~--~~--~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|+... .. +..++..+.+.||++..++
T Consensus 21 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~---~~----~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 21 PFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA---FN----ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG---GG----HHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec---CC----hHHHHHHHHcCCCCEEEEe
Confidence 466667788888999999999987643 22 2233444456899998854 11 1223315667899999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 54
No 77
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=34.08 E-value=64 Score=31.83 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeC
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (462)
.|+.+-+..+++.+++.|..+.+...+......+.+...+++.|+.... +..+.+.+.+.||++..++.
T Consensus 37 ~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~~--------~~~~~~~l~~~~iPvV~i~~ 105 (412)
T 4fe7_A 37 AYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFD--------DKQIEQALADVDVPIVGVGG 105 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEETT--------CHHHHHHHTTCCSCEEEEEE
T ss_pred hhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEecC--------ChHHHHHHhhCCCCEEEecC
Confidence 4555666777888888999998876544333344455668999988321 12244556778999998864
No 78
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=33.89 E-value=88 Score=27.41 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEec
Q 012490 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226 (462)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ 226 (462)
+.|++.|+++.|+.|++...+..+++..|+..++...
T Consensus 56 ~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~ 92 (191)
T 3n1u_A 56 KLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQ 92 (191)
T ss_dssp HHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeCC
Confidence 4567889999999999999999999999999876644
No 79
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=32.83 E-value=51 Score=28.86 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCcEEEEECChHHHHHHHHHHhC
Q 012490 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218 (462)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~ 218 (462)
.++-+.|++.|+++.+..+.....+..+++..|
T Consensus 109 ~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~g 141 (231)
T 3kzx_A 109 IELLDTLKENNITMAIVSNKNGERLRSEIHHKN 141 (231)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCC
Confidence 344445555566666665555555555555554
No 80
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=32.61 E-value=1.1e+02 Score=27.83 Aligned_cols=72 Identities=8% Similarity=0.001 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEC--ChH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVG--KPE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G--~~~--~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+... +.. ..+.+.+...+++.|++...... ..+.+.+.+.||++..++
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~------~~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 21 VFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE------HDYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC------CHHHHHSSCTTSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC------hHHHHHhhccCCCEEEEe
Confidence 46666678888899999999998864 222 22333445568998887543221 123345667899999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 95 ~~ 96 (291)
T 3egc_A 95 RE 96 (291)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 81
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=32.57 E-value=60 Score=27.53 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEECCh
Q 012490 182 IESVSDLRKNLQARGSDLVVRVGKP 206 (462)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~G~~ 206 (462)
+.++.++=+.|++.|+++.|..+.+
T Consensus 29 ~~g~~~~l~~L~~~g~~~~i~Tn~~ 53 (179)
T 3l8h_A 29 LPGSLQAIARLTQADWTVVLATNQS 53 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECT
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCC
Confidence 4455666667788999999998765
No 82
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=31.82 E-value=1.1e+02 Score=28.29 Aligned_cols=104 Identities=12% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCCccChHHHHHhhh----cCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEE---ECC
Q 012490 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVR---VGK 205 (462)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~~~~g~~~~~~~r~~Fl~esL~~L~~~L~~~Gi~L~v~---~G~ 205 (462)
|.--....+|.+|+. .+.++..+++.++.. . .. .|+++.+.++..|++.... .|+
T Consensus 15 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~-----------~---~~----~l~~~~~~~~~~~~~~~~~~~~~g~ 76 (290)
T 3mt0_A 15 EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD-----------H---SA----ALNDLAQELREEGYSVSTNQAWKDS 76 (290)
T ss_dssp CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC-----------C---HH----HHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHH-----------H---HH----HHHHHHHHHhhCCCeEEEEEEeCCC
Confidence 666666777877753 466788888887410 1 12 2456666677778876553 378
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCCch--HHHHHHHHHHHhhhcCCeEEEEe
Q 012490 206 PETVLVELAKAIGADAVYAHREVSHD--EVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 206 ~~~~L~~L~~~~~a~~V~~~~ey~p~--e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
+.+.|.+.+++.+++-|++...-... +.-......+.+...++++-.+.
T Consensus 77 ~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~ 127 (290)
T 3mt0_A 77 LHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTK 127 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEec
Confidence 99999999999999999987643211 11011233445556688888776
No 83
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=31.42 E-value=81 Score=27.76 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCC----CEEEEeccC
Q 012490 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREV 228 (462)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~ey 228 (462)
+.++-+.|++.|+++.+..+.....+..+++..++ +.++...+.
T Consensus 115 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 162 (240)
T 3sd7_A 115 MKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLD 162 (240)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTT
T ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcHhhEEEEEecccc
Confidence 34555667777888888877666667777777664 455554443
No 84
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=30.84 E-value=1.2e+02 Score=27.49 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEC---C---hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEE
Q 012490 183 ESVSDLRKNLQARGSDLVVRVG---K---PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G---~---~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~ 251 (462)
+.++++++.|++.|+.+..... . ..+...+++++.|+..|.++.. . +.-+.+.+.+++.||.+-
T Consensus 61 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p~--~---~~l~~l~~~a~~~gv~l~ 130 (257)
T 3lmz_A 61 EQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVPN--Y---ELLPYVDKKVKEYDFHYA 130 (257)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEEC--G---GGHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecCC--H---HHHHHHHHHHHHcCCEEE
Confidence 4478899999999998876542 2 2344556788999999988643 1 222456677788899765
No 85
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=30.69 E-value=59 Score=29.73 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEE---CChHHHHHHHHHHhCCCEEEEeccC---CchHHHHHHHHHHHhhhcCCeEEE
Q 012490 183 ESVSDLRKNLQARGSDLVVRV---GKPETVLVELAKAIGADAVYAHREV---SHDEVKSEEKIEAAMKDEGIEVKY 252 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~---G~~~~~L~~L~~~~~a~~V~~~~ey---~p~e~~rd~~v~~~l~~~gI~v~~ 252 (462)
++|+-..+..+++||+=+|+- |.....+.+.+ .|++-|.+.-.+ +|++...+...++.|++.|+++..
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 345555666677799888875 55554444433 355555555433 355556678888999999998764
No 86
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=30.59 E-value=1.9e+02 Score=26.13 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCh-H---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGKP-E---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~~-~---~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+...+. . ..+.+.+...+++.|++....... ...+.+.+.||++..++
T Consensus 26 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~~~ 99 (292)
T 3k4h_A 26 PFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND------RIIQYLHEQNFPFVLIG 99 (292)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC------HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHHCCCCEEEEC
Confidence 3666677888889999999998876432 2 233444555689998874321111 23344566799999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 100 ~~ 101 (292)
T 3k4h_A 100 KP 101 (292)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 87
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=30.43 E-value=2.7e+02 Score=25.29 Aligned_cols=73 Identities=14% Similarity=0.010 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECC-hH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGK-PE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~-~~---~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-++.+++.++++|..+.+.... .. +.+..++. .+++.|+..... .... ..+-+.+.+.||++..++
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~-~~~~---~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 15 PWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAA-SGAKGFVICTPD-PKLG---SAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHH-TTCCEEEEECSC-GGGH---HHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCC-chhh---HHHHHHHHHCCCcEEEeC
Confidence 466677788888899999999887653 32 23333443 479988876421 1211 122234566799999887
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 90 ~~ 91 (306)
T 8abp_A 90 DQ 91 (306)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 88
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=30.16 E-value=1.8e+02 Score=26.86 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCcEEEE-E-CChHHHHHHHHHHhC--CCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 184 SVSDLRKNLQARGSDLVVR-V-GKPETVLVELAKAIG--ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~-~-G~~~~~L~~L~~~~~--a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
++.-|+..+++.|.+++|- . |..-.+|..++.+.+ +..|+++..+.+.+. .+.+++.+++.||+++.+.
T Consensus 33 ~~~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~~~v~vv~idtg~~~~et--~~~~~~~~~~~gi~~~v~~ 105 (252)
T 2o8v_A 33 AEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPET--YRFIDELTDKLKLNLKVYR 105 (252)
T ss_dssp HHHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCBCHHH--HHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH--HHHHHHHHHHhCCceEEEc
Confidence 4455666666677566554 4 444567777777764 556666666554432 4567777888899998764
No 89
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=30.05 E-value=57 Score=28.15 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=30.9
Q ss_pred HHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEE
Q 012490 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (462)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~ 224 (462)
+=+.|++.|+++.+..|++...+..++++.++..++.
T Consensus 43 ~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~ 79 (180)
T 1k1e_A 43 GIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFL 79 (180)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeec
Confidence 3345677899999999999899999999999988664
No 90
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=30.01 E-value=2.8e+02 Score=25.84 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECC--hHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGK--PET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~--~~~--~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+...+ ... .+.+.+...+++.|+...... . +..+.+.+++.||++..++
T Consensus 76 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~----~~~~~~~~~~~~iPvV~~~ 150 (338)
T 3dbi_A 76 IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFL-S----VDEIDDIIDAHSQPIMVLN 150 (338)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSS-C----HHHHHHHHHHCSSCEEEES
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC-C----hHHHHHHHHcCCCCEEEEc
Confidence 366667788888999999999888643 222 123344456899988754221 1 1234556677899998876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 151 ~~ 152 (338)
T 3dbi_A 151 RR 152 (338)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 91
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=29.94 E-value=1.8e+02 Score=28.08 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhC-------CCcEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHhhhcCC
Q 012490 179 SFLIESVSDLRKNLQAR-------GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGI 248 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~-------Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---ey~p~e~~rd~~v~~~l~~~gI 248 (462)
.=+.+-|.+|++++++. +-.+++.+ +.+..|++.+|.+.+.... +-+|...+. ..+.+.+++.+|
T Consensus 180 ~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H----~af~Yfa~~yGL~~~~~~~~~~~~eps~~~l-~~l~~~ik~~~v 254 (321)
T 1xvl_A 180 AVYSEQLKAIDRQLGADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTPKQV-QTVIEEVKTNNV 254 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSSSSCSCCHHHH-HHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCCEEEEEC----chHHHHHHHCCCeEEEeeccCCCCCCCHHHH-HHHHHHHHHcCC
Confidence 33456677777776542 33455554 4688999999998776532 334544443 557777888999
Q ss_pred eEEEEe
Q 012490 249 EVKYFW 254 (462)
Q Consensus 249 ~v~~~~ 254 (462)
.+..++
T Consensus 255 ~~If~e 260 (321)
T 1xvl_A 255 PTIFCE 260 (321)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 888653
No 92
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=29.89 E-value=66 Score=30.21 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=50.8
Q ss_pred CCCccChHHHHHhhh----cCCceeeEEEeCCCccCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHh--CCC--cEEEEE
Q 012490 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTG-PYRASFLIESVSDLRKNLQA--RGS--DLVVRV 203 (462)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vlpVyi~dp~~~~~~~~g~~~~~-~~r~~Fl~esL~~L~~~L~~--~Gi--~L~v~~ 203 (462)
|..-....+|..|.. .+.+|..|+++++..... ..... .....-..+.|+++.+.|.+ .|+ ...+..
T Consensus 179 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (309)
T 3cis_A 179 DGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE----WPGIDWPATQSMAEQVLAERLAGWQERYPNVAITRVVVR 254 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT----CSSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEES
T ss_pred CCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccC----CCcccHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEc
Confidence 666566667766653 467888999987643210 00111 11111222233444344433 244 455678
Q ss_pred CChHHHHHHHHHHhCCCEEEEec
Q 012490 204 GKPETVLVELAKAIGADAVYAHR 226 (462)
Q Consensus 204 G~~~~~L~~L~~~~~a~~V~~~~ 226 (462)
|++.+.|.+.++ +++-|++-.
T Consensus 255 g~~~~~I~~~a~--~adliV~G~ 275 (309)
T 3cis_A 255 DQPARQLVQRSE--EAQLVVVGS 275 (309)
T ss_dssp SCHHHHHHHHHT--TCSEEEEES
T ss_pred CCHHHHHHHhhC--CCCEEEECC
Confidence 999999999987 899888865
No 93
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=29.84 E-value=90 Score=25.92 Aligned_cols=44 Identities=7% Similarity=-0.056 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEE
Q 012490 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVY 223 (462)
Q Consensus 180 Fl~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~ 223 (462)
-.+..|.++.+++++.|+.++.+.-+..+.+.+++++++..-.+
T Consensus 53 ~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~ 96 (163)
T 3gkn_A 53 TEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPL 96 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceE
Confidence 34678899999999999999988888888899999988876433
No 94
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=29.63 E-value=2e+02 Score=27.09 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhC-----CCcEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHhhhcCCeEEE
Q 012490 181 LIESVSDLRKNLQAR-----GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEVKY 252 (462)
Q Consensus 181 l~esL~~L~~~L~~~-----Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---ey~p~e~~rd~~v~~~l~~~gI~v~~ 252 (462)
+.+-|.+|++++++. |-.+++.+ ..+..|++.+|.+.+.... +-+|...+. .++.+.+++.+|.+..
T Consensus 157 ~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l-~~l~~~ik~~~v~~if 231 (284)
T 3cx3_A 157 FIKKAQELTKKFQPKFEKATQKTFVTQH----TAFSYLAKRFGLNQLGIAGISPEQEPSPRQL-TEIQEFVKTYKVKTIF 231 (284)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCEEEEE----SCCHHHHHHTTCCEEEEECSSTTCCCCSHHH-HHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEC----CchHHHHHHcCCEEeeccCCCCCCCCCHHHH-HHHHHHHHHcCCCEEE
Confidence 455677777665542 45666665 3578999999999876542 233444433 4577778889998875
Q ss_pred E
Q 012490 253 F 253 (462)
Q Consensus 253 ~ 253 (462)
+
T Consensus 232 ~ 232 (284)
T 3cx3_A 232 T 232 (284)
T ss_dssp E
T ss_pred E
Confidence 4
No 95
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.49 E-value=2e+02 Score=26.33 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECC-hH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGK-PE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~-~~---~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|+........ .+.+.+.+.||++..++
T Consensus 25 ~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~------~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 25 PFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEND------PIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTC------HHHHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccCh------HHHHHHHhCCCCEEEEC
Confidence 477777888999999999999887543 22 234445556789998875322111 22344566799999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 99 ~~ 100 (295)
T 3hcw_A 99 KP 100 (295)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 96
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=29.49 E-value=1.5e+02 Score=27.17 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCE----------EEE-eccC---CchHHHHHHHHHHHhhhcCCeE
Q 012490 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA----------VYA-HREV---SHDEVKSEEKIEAAMKDEGIEV 250 (462)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~----------V~~-~~ey---~p~e~~rd~~v~~~l~~~gI~v 250 (462)
.+.|++ ++.|+.+.+..|.+...+..+.++.+... |+. +.++ .+-....-+++.+.+++.++.+
T Consensus 25 ~~al~~--~~~Gi~v~iaTGR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~~ 102 (268)
T 1nf2_A 25 RRNIEK--LSRKCYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHW 102 (268)
T ss_dssp HHHHHH--HTTTSEEEEECSSCHHHHHHHHHHHSSSCCCEEEGGGTEEEETTTEEEEECCBCHHHHHHHHHHHGGGCCCE
T ss_pred HHHHHH--HhCCCEEEEECCCChHHHHHHHHHhCCCCCeEEEeCCeEEECCCCCEEEecCCCHHHHHHHHHHHHhCCCEE
Confidence 344554 57899999999999888888888887753 332 1111 0111223345667777778887
Q ss_pred EEEeCCeee
Q 012490 251 KYFWGSTLY 259 (462)
Q Consensus 251 ~~~~~~~L~ 259 (462)
..+.+..++
T Consensus 103 ~~~~~~~~~ 111 (268)
T 1nf2_A 103 QAYIDDVLY 111 (268)
T ss_dssp EEECSSCEE
T ss_pred EEEECCEEE
Confidence 776655444
No 97
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=29.37 E-value=55 Score=27.42 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=31.8
Q ss_pred HHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEec
Q 012490 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226 (462)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ 226 (462)
-+.|++.|+++.+..|++......++++.|+..++...
T Consensus 40 l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~ 77 (164)
T 3e8m_A 40 IFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGV 77 (164)
T ss_dssp HHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSC
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeeccc
Confidence 35567789999999999989999999999998876643
No 98
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=29.24 E-value=1.9e+02 Score=26.10 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEC------ChHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEE
Q 012490 183 ESVSDLRKNLQARGSDLVVRVG------KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G------~~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~ 251 (462)
+.++++++.|++.|+.+..... +..+...+++++.|+..|.++.. ... -+.+.+.+++.||.+-
T Consensus 63 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~--~~~---~~~l~~~a~~~gv~l~ 132 (262)
T 3p6l_A 63 QTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA--LSD---WDLVEKLSKQYNIKIS 132 (262)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC--GGG---HHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC--HHH---HHHHHHHHHHhCCEEE
Confidence 4578899999999999877642 23466677889999999998742 121 2456777788899765
No 99
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=29.11 E-value=1.7e+02 Score=26.97 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCh-H---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGKP-E---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~~-~---~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.++++|..+.+...+. . ..+.+.+...+++.|++....... ...+.+.+.||++..++
T Consensus 40 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~ 113 (305)
T 3huu_A 40 PFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD------PIEHLLNEFKVPYLIVG 113 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC------HHHHHHHHTTCCEEEES
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc------HHHHHHHHcCCCEEEEC
Confidence 5777778888899999999998876432 1 234445556789998875321111 12334566799999887
Q ss_pred CCe
Q 012490 255 GST 257 (462)
Q Consensus 255 ~~~ 257 (462)
...
T Consensus 114 ~~~ 116 (305)
T 3huu_A 114 KSL 116 (305)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 100
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=28.91 E-value=89 Score=27.00 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCC----CEEEEeccC
Q 012490 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREV 228 (462)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~ey 228 (462)
+.++-+.|++.|+++.+..+.....+..+++..++ +.++...++
T Consensus 91 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 138 (226)
T 3mc1_A 91 IEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFYFDAIVGSSLD 138 (226)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTT
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHhheeeeeccCCC
Confidence 34444556666777777776666666666666654 345554443
No 101
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=28.89 E-value=73 Score=24.43 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeC
Q 012490 209 VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 209 ~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (462)
...+.+++-++.-|+...|.++ + .-+.+...|++.+|++..+.+
T Consensus 18 ~v~kai~~gkaklViiA~D~~~-~--~~~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAKDADP-I--LTSSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp HHHHHHTTTCEEEEEEETTSCH-H--HHHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHcCCeeEEEEeCCCCH-H--HHHHHHHHHHHcCCCEEEECC
Confidence 3445555556778888888777 2 345688888888898887653
No 102
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=28.39 E-value=2.2e+02 Score=25.48 Aligned_cols=65 Identities=11% Similarity=0.278 Sum_probs=41.2
Q ss_pred HHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEE--------------eccCCchHHHHHHHHHHHhhhcCCeEEEEeC
Q 012490 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA--------------HREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~--------------~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (462)
+.|++.|+.+.+..|.+...+..+.++.+...+++ ..... ...-+.+.+.+++.|+.+..+.+
T Consensus 30 ~~l~~~G~~~~~aTGR~~~~~~~~~~~l~~~~~i~~nGa~i~~~~~~i~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~ 106 (258)
T 2pq0_A 30 RRLKQSGVYVAIATGRAPFMFEHVRKQLGIDSFVSFNGQYVVFEGNVLYKQPLR---REKVRALTEEAHKNGHPLVFMDA 106 (258)
T ss_dssp HHHHHTTCEEEEECSSCGGGSHHHHHHHTCCCEEEGGGTEEEETTEEEEECCCC---HHHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHCCCEEEEECCCChHHHHHHHHhcCCCEEEECCCCEEEECCEEEEEecCC---HHHHHHHHHHHHhCCCeEEEEeC
Confidence 34567799999999998777777777776543221 11111 22234566677788888877655
Q ss_pred Ce
Q 012490 256 ST 257 (462)
Q Consensus 256 ~~ 257 (462)
..
T Consensus 107 ~~ 108 (258)
T 2pq0_A 107 EK 108 (258)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 103
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=28.12 E-value=2.4e+02 Score=25.04 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECC--hH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGK--PE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~--~~--~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|+........ +. ..+.+.+.||++..++
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~----~~-~~~~~~~~~iPvV~~~ 89 (272)
T 3o74_A 15 PSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE----DD-SYRELQDKGLPVIAID 89 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS----CC-HHHHHHHTTCCEEEES
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc----HH-HHHHHHHcCCCEEEEc
Confidence 366666788888999999999988643 22 122333445689998875432111 11 2234566799999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 90 ~~ 91 (272)
T 3o74_A 90 RR 91 (272)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 104
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.93 E-value=1.4e+02 Score=23.92 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEECC--hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeE
Q 012490 183 ESVSDLRKNLQARGSDLVVRVGK--PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEV 250 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~--~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v 250 (462)
+.|+.++.-.++.|..+.-.... -.+.+.+|+++|+++.|+.--+ ...+-++.-++.+..|..+
T Consensus 13 etlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvd----dkewaekairfvkslgaqv 78 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVD----DKEWAEKAIRFVKSLGAQV 78 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECS----SHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEc----cHHHHHHHHHHHHhcCCeE
Confidence 45666777777777666555432 3466778888888887765432 2233233333445555443
No 105
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=27.88 E-value=1.7e+02 Score=27.59 Aligned_cols=69 Identities=9% Similarity=0.113 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhC-----CCcEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHhhhcCCeEEE
Q 012490 181 LIESVSDLRKNLQAR-----GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEVKY 252 (462)
Q Consensus 181 l~esL~~L~~~L~~~-----Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---ey~p~e~~rd~~v~~~l~~~gI~v~~ 252 (462)
+.+-|..|++++++. +..+++.+ ..+..|++.+|.+.+.... +-+|...+. +++.+.+++.+|.+..
T Consensus 154 ~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l-~~l~~~ik~~~v~~if 228 (284)
T 2prs_A 154 FEAQLASTETQVGNELAPLKGKGYFVFH----DAYGYFEKQFGLTPLGHFTVNPEIQPGAQRL-HEIRTQLVEQKATCVF 228 (284)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTCCEEEEE----SCCHHHHHHHTCCCCEEEESSTTSCCCHHHH-HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEC----ccHHHHHHHCCCeEeEeeccCCCCCCCHHHH-HHHHHHHHHcCCCEEE
Confidence 455677776666543 45566655 3578999999998665432 334554443 4577778889999886
Q ss_pred Ee
Q 012490 253 FW 254 (462)
Q Consensus 253 ~~ 254 (462)
++
T Consensus 229 ~e 230 (284)
T 2prs_A 229 AE 230 (284)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 106
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=27.54 E-value=1.7e+02 Score=27.75 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhC-----CCcEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHhhhcCCeE
Q 012490 179 SFLIESVSDLRKNLQAR-----GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEV 250 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~-----Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---ey~p~e~~rd~~v~~~l~~~gI~v 250 (462)
.=+.+-|.+|++++++. |-.+++.+ ..+..|++.+|.+.+.... +-+|...+ -.++.+.+++.+|++
T Consensus 157 ~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 157 KAFKKEAEQLTEEYTQKFKKVRSKTFVTQH----TAFSYLAKRFGLKQLGISGISPEQEPSPRQ-LKEIQDFVKEYNVKT 231 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCCEEEEEE----SCCHHHHHHTTCEEEEEECSCC---CCHHH-HHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEC----CchHHHHHHCCCeEeeccccCCCCCCCHHH-HHHHHHHHHHcCCCE
Confidence 33456677777776653 45555554 3678999999998765432 22343333 345777788889988
Q ss_pred EEE
Q 012490 251 KYF 253 (462)
Q Consensus 251 ~~~ 253 (462)
..+
T Consensus 232 if~ 234 (286)
T 3gi1_A 232 IFA 234 (286)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 107
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=27.48 E-value=2.2e+02 Score=27.03 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhC--C-----CcEEEEECChHHHHHHHHHHhCCCEEEEec---cCCchHHHHHHHHHHHhhhcC
Q 012490 178 ASFLIESVSDLRKNLQAR--G-----SDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEG 247 (462)
Q Consensus 178 ~~Fl~esL~~L~~~L~~~--G-----i~L~v~~G~~~~~L~~L~~~~~a~~V~~~~---ey~p~e~~rd~~v~~~l~~~g 247 (462)
..=+.+-|.+|++++++. + -.+++.+ ..+..|++.+|.+.+.... +-+|...+ -+++.+.+++.+
T Consensus 158 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~ 232 (294)
T 3hh8_A 158 LKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSE----GCFKYFSKAYGVPSAYIWEINTEEEGTPDQ-ISSLIEKLKVIK 232 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEE----SCCHHHHHHHTCCEEEEESSCCSCCCCHHH-HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCcEEEEEC----ChHHHHHHHcCCceeeccccCCCCCCCHHH-HHHHHHHHHHcC
Confidence 344566788888888763 2 3355544 3678999999999876532 33444443 355777888899
Q ss_pred CeEEEEe
Q 012490 248 IEVKYFW 254 (462)
Q Consensus 248 I~v~~~~ 254 (462)
|++..++
T Consensus 233 v~~if~e 239 (294)
T 3hh8_A 233 PSALFVE 239 (294)
T ss_dssp CSCEEEE
T ss_pred CCEEEEe
Confidence 9888653
No 108
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=27.26 E-value=1.4e+02 Score=25.46 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEECCh-HHHHHHHHHHhCCCEEE
Q 012490 183 ESVSDLRKNLQARGSDLVVRVGKP-ETVLVELAKAIGADAVY 223 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~-~~~L~~L~~~~~a~~V~ 223 (462)
.++.++=+.|++.|+++.|..+.+ ...+..+++..++...+
T Consensus 71 ~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~~f 112 (187)
T 2wm8_A 71 PEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYF 112 (187)
T ss_dssp TTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTTE
T ss_pred hhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcHhhc
Confidence 334445556677799999999988 68888888988876543
No 109
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=27.11 E-value=69 Score=25.81 Aligned_cols=92 Identities=10% Similarity=0.040 Sum_probs=53.1
Q ss_pred CCCccChHHHHHhhh----cCCceeeEEEe-CC--Cc--cCCCCCCCCCCCHHHH---HHHHHHHHHHHHHH--HhCC-C
Q 012490 133 DLRVHDNESLNTANN----ESVSVLPVYCF-DP--RD--YGKSSSGFDKTGPYRA---SFLIESVSDLRKNL--QARG-S 197 (462)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vlpVyi~-dp--~~--~~~~~~g~~~~~~~r~---~Fl~esL~~L~~~L--~~~G-i 197 (462)
|.--....+|..|.. .+..+..++++ +. .. +.. .++........ .-..+.|+++ +.+ ...| +
T Consensus 12 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 88 (138)
T 1q77_A 12 DAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVT--FGLPFPPEIKEESKKRIERRLREV-WEKLTGSTEIP 88 (138)
T ss_dssp STTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHH--HCCCCCTHHHHHHHHHHHHHHHHH-HHHHHSCCCCC
T ss_pred cCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccc--cCCCCChHHHHHHHHHHHHHHHHH-HHHhhccCCcc
Confidence 444455667777653 35678888888 62 11 010 00000011111 1123344455 442 3333 5
Q ss_pred cEEEEECChHHHHHHHHHHhCCCEEEEecc
Q 012490 198 DLVVRVGKPETVLVELAKAIGADAVYAHRE 227 (462)
Q Consensus 198 ~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e 227 (462)
...+..|++.+.|.+.+++.+++-|++...
T Consensus 89 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 118 (138)
T 1q77_A 89 GVEYRIGPLSEEVKKFVEGKGYELVVWACY 118 (138)
T ss_dssp CEEEECSCHHHHHHHHHTTSCCSEEEECSC
T ss_pred eEEEEcCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 667788999999999999999999998754
No 110
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=26.10 E-value=2.1e+02 Score=26.63 Aligned_cols=130 Identities=11% Similarity=-0.030 Sum_probs=69.6
Q ss_pred CCCCCeEEEEEeCCCCccChHHHHHhh----hcCCceeeEEEeCCCccCCCCCCCCCCCH-H---HHHHHHHHHHHHHHH
Q 012490 120 AAIRRASIVWFRNDLRVHDNESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTGP-Y---RASFLIESVSDLRKN 191 (462)
Q Consensus 120 ~~~~~~~LvWFRrDLRl~DN~AL~~A~----~~~~~vlpVyi~dp~~~~~~~~g~~~~~~-~---r~~Fl~esL~~L~~~ 191 (462)
....+..|+=. |.--....+|..|+ ..+.+|..++++++...... .+ .... . ...-..+.|.++.+.
T Consensus 16 ~~~~~~ILv~~--D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~ 90 (309)
T 3cis_A 16 GNSSLGIIVGI--DDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWL-EV--PLPPGVLRWQQDHGRHLIDDALKV 90 (309)
T ss_dssp --CTTEEEEEC--CSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTT-CC--CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEE--CCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccc-cC--CCCchhhHHHHHHHHHHHHHHHHH
Confidence 33445444443 33344456676654 34678999999885432100 00 1111 1 112233456666667
Q ss_pred HHhC-----CCcE--EEEECChHHHHHHHHHHhCCCEEEEeccC-CchHH-HHHHHHHHHhhhcCCeEEEEeCC
Q 012490 192 LQAR-----GSDL--VVRVGKPETVLVELAKAIGADAVYAHREV-SHDEV-KSEEKIEAAMKDEGIEVKYFWGS 256 (462)
Q Consensus 192 L~~~-----Gi~L--~v~~G~~~~~L~~L~~~~~a~~V~~~~ey-~p~e~-~rd~~v~~~l~~~gI~v~~~~~~ 256 (462)
+++. |++. .+..|++.+.|.+.++ +++-|++...- ..... -.-....+.+...+++|..+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 162 (309)
T 3cis_A 91 VEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDE 162 (309)
T ss_dssp HHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTT
T ss_pred HHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCC
Confidence 7665 6655 4567999999999876 78888887542 11110 01122334445567888876544
No 111
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=25.73 E-value=2e+02 Score=26.47 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=42.3
Q ss_pred HHHhCCCcEEEEECChHHHHHHHHHHhCCC---------------EEEEeccCCchHHHHHHHHHHHhhhc--CCeEEEE
Q 012490 191 NLQARGSDLVVRVGKPETVLVELAKAIGAD---------------AVYAHREVSHDEVKSEEKIEAAMKDE--GIEVKYF 253 (462)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~---------------~V~~~~ey~p~e~~rd~~v~~~l~~~--gI~v~~~ 253 (462)
+|++.|+.+.+..|.+...+..+.++.+.. .+++....... .-+.+.+.+.+. ++.+..+
T Consensus 50 ~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~l~~~---~~~~i~~~~~~~~~~~~~~~~ 126 (283)
T 3dao_A 50 RLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTYPMDED---IWKGMCRMVRDELPACDYFAA 126 (283)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHTGGGGGGCEEEETTTTEEECSSCEEEECCCCHH---HHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHCCCEEEEEcCCCHHHHHHHHHHcCCCcEEEECCCcEEEECCEEEEEecCCHH---HHHHHHHHHHHhcCCceEEEE
Confidence 446779999999999988888888776543 22222222222 223455666666 8888777
Q ss_pred eCCeeee
Q 012490 254 WGSTLYH 260 (462)
Q Consensus 254 ~~~~L~~ 260 (462)
.....+-
T Consensus 127 ~~~~~~~ 133 (283)
T 3dao_A 127 TPDFCFA 133 (283)
T ss_dssp CSSCEEE
T ss_pred eCCeEEE
Confidence 6665543
No 112
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=25.73 E-value=4.2e+02 Score=24.88 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEC--ChH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVG--KPE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G--~~~--~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+... +.. ..+.+.+...+++.|++..... .. ...+.+.+.||++..++
T Consensus 83 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~-~~-----~~~~~l~~~~iPvV~i~ 156 (355)
T 3e3m_A 83 LHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH-TE-----QTIRLLQRASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC-CH-----HHHHHHHHCCSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC-CH-----HHHHHHHhCCCCEEEEC
Confidence 36666778888999999999988764 222 1223333456889888754222 11 22344567899999885
Q ss_pred C
Q 012490 255 G 255 (462)
Q Consensus 255 ~ 255 (462)
+
T Consensus 157 ~ 157 (355)
T 3e3m_A 157 E 157 (355)
T ss_dssp S
T ss_pred C
Confidence 4
No 113
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=25.61 E-value=95 Score=29.61 Aligned_cols=68 Identities=7% Similarity=0.092 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhC-----CCcEEEEECChHHHHHHHHHHhCCCEEEEec-cCCchHHHHHHHHHHHhhhcCCeEEEE
Q 012490 181 LIESVSDLRKNLQAR-----GSDLVVRVGKPETVLVELAKAIGADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (462)
Q Consensus 181 l~esL~~L~~~L~~~-----Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~-ey~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (462)
+.+-|..|++++++. +-.+++.. ..+..|++.+|.+.+.... +-+|...+ -.++.+.+++.+|++..+
T Consensus 170 ~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~eps~~~-l~~l~~~ik~~~v~~If~ 243 (291)
T 1pq4_A 170 FLAELERLNQELGQILQPLPQRKFIVFH----PSWAYFARDYNLVQIPIEVEGQEPSAQE-LKQLIDTAKENNLTMVFG 243 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCEEEESS----CCCHHHHHHTTCEEEESCBTTBCCCHHH-HHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEC----CchHHHHHHCCCEEeecccCCCCCCHHH-HHHHHHHHHHcCCCEEEE
Confidence 445666776666543 33333332 3577899999988665432 22333333 345777778888888764
No 114
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=25.49 E-value=79 Score=27.65 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhC
Q 012490 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218 (462)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~ 218 (462)
+.++-+.|++.|+++.+..+.....+..+++..|
T Consensus 109 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~ 142 (237)
T 4ex6_A 109 VLEGLDRLSAAGFRLAMATSKVEKAARAIAELTG 142 (237)
T ss_dssp HHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcC
Confidence 3344455666666666666665555555555554
No 115
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=25.13 E-value=1.5e+02 Score=29.43 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEE
Q 012490 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (462)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~ 224 (462)
+..+++-|+..|++.++..|+..+++..|++.-.+..|++
T Consensus 137 ~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS 176 (379)
T 1ul1_X 137 NDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176 (379)
T ss_dssp HHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEe
Confidence 4566777777788888888877777777777644443433
No 116
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=25.10 E-value=3e+02 Score=24.97 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEECC--------------hHHHHHHHHHHhCCCEEEEeccCCchH----------HHHHHH
Q 012490 183 ESVSDLRKNLQARGSDLVVRVGK--------------PETVLVELAKAIGADAVYAHREVSHDE----------VKSEEK 238 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~--------------~~~~L~~L~~~~~a~~V~~~~ey~p~e----------~~rd~~ 238 (462)
+.++.+++.|++.|+.+..+... ..+...+++++.|+..|.++....+.. .+.-+.
T Consensus 48 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~ 127 (286)
T 3dx5_A 48 ETTERELNCLKDKTLEITMISDYLDISLSADFEKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRM 127 (286)
T ss_dssp HHHHHHHHHTGGGTCCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHH
Q ss_pred HHHHhhhcCCeE
Q 012490 239 IEAAMKDEGIEV 250 (462)
Q Consensus 239 v~~~l~~~gI~v 250 (462)
+.+.+++.||.+
T Consensus 128 l~~~a~~~Gv~l 139 (286)
T 3dx5_A 128 ICELFAQHNMYV 139 (286)
T ss_dssp HHHHHHHTTCEE
T ss_pred HHHHHHHhCCEE
No 117
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=25.03 E-value=1.3e+02 Score=26.31 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=15.5
Q ss_pred HHHHhCCCcEEEEECChHHHHHHHHHHhC
Q 012490 190 KNLQARGSDLVVRVGKPETVLVELAKAIG 218 (462)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~ 218 (462)
+.|++.|+++.|..+.....+..+++..|
T Consensus 93 ~~l~~~g~~~~i~s~~~~~~~~~~l~~~g 121 (222)
T 2nyv_A 93 EALKSKGFKLAVVSNKLEELSKKILDILN 121 (222)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTT
T ss_pred HHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 34455566666655555555555555544
No 118
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=24.85 E-value=2.3e+02 Score=25.84 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECC----hHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVGK----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G~----~~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+...+ ..+.+..+ ...+++.|++..... .. ..+ +.+.+ ||++..++
T Consensus 24 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~-~~----~~~-~~~~~-~iPvV~i~ 95 (289)
T 3k9c_A 24 PFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQAL-MRERCEAAILLGTRF-DT----DEL-GALAD-RVPALVVA 95 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHH-TTTTEEEEEEETCCC-CH----HHH-HHHHT-TSCEEEES
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH-HhCCCCEEEEECCCC-CH----HHH-HHHHc-CCCEEEEc
Confidence 466667788888999999999887532 22333343 345788887754222 21 223 33455 99999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 96 ~~ 97 (289)
T 3k9c_A 96 RA 97 (289)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 119
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=24.77 E-value=1.8e+02 Score=24.46 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEE
Q 012490 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~ 224 (462)
.+.++-+.|++.|+.+.+..|+....+..+.+..+...++.
T Consensus 80 ~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~~~~~ 120 (211)
T 1l7m_A 80 GAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFA 120 (211)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCeEEE
Confidence 34555556677888888888877666666777777765543
No 120
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=24.56 E-value=99 Score=28.06 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEE-------CCh---------HHHHHHHHHHhCCCEEEEeccCCc-----hHH------H
Q 012490 182 IESVSDLRKNLQARGSDLVVRV-------GKP---------ETVLVELAKAIGADAVYAHREVSH-----DEV------K 234 (462)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~-------G~~---------~~~L~~L~~~~~a~~V~~~~ey~p-----~e~------~ 234 (462)
-..++++++.|++.|+.+.... .++ .+...+++++.|+..|.++....+ .+. +
T Consensus 44 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~ 123 (275)
T 3qc0_A 44 AIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVE 123 (275)
T ss_dssp HHCHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHH
Confidence 3567889999999998876443 121 233446778899999988753222 111 1
Q ss_pred HHHHHHHHhhhcCCeEE
Q 012490 235 SEEKIEAAMKDEGIEVK 251 (462)
Q Consensus 235 rd~~v~~~l~~~gI~v~ 251 (462)
.-+.+.+.+++.||.+-
T Consensus 124 ~l~~l~~~a~~~gv~l~ 140 (275)
T 3qc0_A 124 GIAAVLPHARAAGVPLA 140 (275)
T ss_dssp HHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 12334444566788765
No 121
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=24.53 E-value=99 Score=26.59 Aligned_cols=40 Identities=5% Similarity=-0.114 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCE
Q 012490 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA 221 (462)
Q Consensus 182 ~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~ 221 (462)
+..|+++.+++++.|+.++.+..+..+.+.++++++++.-
T Consensus 71 l~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f 110 (179)
T 3ixr_A 71 GLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTF 110 (179)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCce
Confidence 5678899999999999988888888888899999887653
No 122
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=24.49 E-value=1.3e+02 Score=25.51 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEE
Q 012490 209 VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (462)
Q Consensus 209 ~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~ 252 (462)
.+.+++++..++-|+...+-......-+..+++.+-+.||++.+
T Consensus 87 ~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 87 SIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp CHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred cHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 36667777777777665544223334456777777778887753
No 123
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=24.49 E-value=3.1e+02 Score=25.12 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECC--hH--HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeC
Q 012490 180 FLIESVSDLRKNLQARGSDLVVRVGK--PE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 180 Fl~esL~~L~~~L~~~Gi~L~v~~G~--~~--~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (462)
|+.+-+..+++.+++.|..+.+...+ .. ..+.+.+...+++.|+........+ +.+. .+.+ ||++..++.
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~-~l~~-~iPvV~i~~ 102 (303)
T 3kke_A 29 VFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD----DMLA-AVLE-GVPAVTINS 102 (303)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCH----HHHH-HHHT-TSCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcH----HHHH-HHhC-CCCEEEECC
Confidence 55556677888899999999987632 22 2334444556899988754322221 1233 3455 999998765
Q ss_pred C
Q 012490 256 S 256 (462)
Q Consensus 256 ~ 256 (462)
.
T Consensus 103 ~ 103 (303)
T 3kke_A 103 R 103 (303)
T ss_dssp C
T ss_pred c
Confidence 4
No 124
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=24.49 E-value=79 Score=29.67 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=13.4
Q ss_pred HHHHHHhCCCcEEEEECChHHHHHHHHHHhC
Q 012490 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIG 218 (462)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~ 218 (462)
+-+.|++.|++++++.|+....+..++++.|
T Consensus 149 ~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g 179 (297)
T 4fe3_A 149 FFGKLQQHGIPVFIFSAGIGDVLEEVIRQAG 179 (297)
T ss_dssp HHHHHHHTTCCEEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHHHHcCCeEEEEeCCcHHHHHHHHHHcC
Confidence 3333444444444444444444444444443
No 125
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=24.37 E-value=1e+02 Score=26.65 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCC
Q 012490 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA 219 (462)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a 219 (462)
+.++-+.|++.|+++.+..+...+.+..+++..++
T Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l 130 (233)
T 3s6j_A 96 AVELLETLDKENLKWCIATSGGIDTATINLKALKL 130 (233)
T ss_dssp HHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcch
Confidence 33444455555666666665555555555555443
No 126
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=24.36 E-value=1.9e+02 Score=24.16 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 209 VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 209 ~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
...+.++.-++.-|+...+.+|.++. ..+...|.+.+|++..+.
T Consensus 31 ~v~Kai~~gka~LViiA~D~~p~~~~--~~i~~lc~~~~Ip~~~v~ 74 (126)
T 2xzm_U 31 EVLRTIEAKQALFVCVAEDCDQGNYV--KLVKALCAKNEIKYVSVP 74 (126)
T ss_dssp HHHHHHHHTCCSEEEEESSCCSTTHH--HHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHH--HHHHHHHHHhCCCEEEEC
Confidence 34455566789999999998876553 468888999999998654
No 127
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=23.98 E-value=1.5e+02 Score=24.16 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEE
Q 012490 207 ETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (462)
Q Consensus 207 ~~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (462)
.+.+.+++++++++.|+........ ..-+++...|.+.|+++..+
T Consensus 54 ~~~l~~~~~~~~id~viia~~~~~~--~~~~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 54 PKYLERLIKKHCISTVLLAVPSASQ--VQKKVIIESLAKLHVEVLTI 98 (141)
T ss_dssp GGGHHHHHHHHTCCEEEECCTTSCH--HHHHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCH--HHHHHHHHHHHHcCCeEEEC
Confidence 3568889999999999886543222 23345777888899998864
No 128
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=23.85 E-value=3e+02 Score=24.37 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEE----CChH---HHHHHHHHHhC-CCEEEEeccCCchHHHHHHHHHHHhhhcCCeE
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRV----GKPE---TVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEV 250 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~----G~~~---~~L~~L~~~~~-a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v 250 (462)
.|+.+-+..+++.+++.|..+.+.. ++.. +.+..+++. + ++.|+....-... .+ ...+.+.+.||++
T Consensus 13 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~vdgii~~~~~~~~---~~-~~~~~~~~~~ipv 87 (276)
T 3ksm_A 13 AYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQ-APPDALILAPNSAED---LT-PSVAQYRARNIPV 87 (276)
T ss_dssp THHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHH-SCCSEEEECCSSTTT---TH-HHHHHHHHTTCCE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCCCHHH---HH-HHHHHHHHCCCcE
Confidence 3556667778888899999998875 2332 344455554 6 9998885421111 11 2233456679999
Q ss_pred EEEeCC
Q 012490 251 KYFWGS 256 (462)
Q Consensus 251 ~~~~~~ 256 (462)
..++..
T Consensus 88 V~~~~~ 93 (276)
T 3ksm_A 88 LVVDSD 93 (276)
T ss_dssp EEESSC
T ss_pred EEEecC
Confidence 988654
No 129
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=23.70 E-value=3.4e+02 Score=26.18 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEC-ChHHHHHHHHHHh------CCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEE
Q 012490 180 FLIESVSDLRKNLQARGSDLVVRVG-KPETVLVELAKAI------GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (462)
Q Consensus 180 Fl~esL~~L~~~L~~~Gi~L~v~~G-~~~~~L~~L~~~~------~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~ 252 (462)
...+++.-|++.+++.+-.++.+.| ..-.+|..|+.+. .+..|+++..+.+.+ ..+-+.+.+++.||++..
T Consensus 31 le~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~e--t~~~v~~~~~~~gi~l~v 108 (325)
T 1zun_A 31 LEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQE--MYRFRDQMVEEMGLDLIT 108 (325)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHH--HHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHH--HHHHHHHHHHHcCCCEEE
Confidence 4556888888888887633344455 3445677777665 567888887776543 345677788889999987
Q ss_pred EeC
Q 012490 253 FWG 255 (462)
Q Consensus 253 ~~~ 255 (462)
+.-
T Consensus 109 ~~~ 111 (325)
T 1zun_A 109 HIN 111 (325)
T ss_dssp ECC
T ss_pred EeC
Confidence 653
No 130
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=23.54 E-value=1.8e+02 Score=26.30 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhCCCcE--EEEECChHHHHHHHHHHhCCCEEEEeccCCc--hHH-HHHHHHHHHhhhcCCeEEEEeC
Q 012490 181 LIESVSDLRKNLQARGSDL--VVRVGKPETVLVELAKAIGADAVYAHREVSH--DEV-KSEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 181 l~esL~~L~~~L~~~Gi~L--~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p--~e~-~rd~~v~~~l~~~gI~v~~~~~ 255 (462)
..+.|..+.+.+++.|++. .+..|++.+.|.+. +.+++-|++...-.. ... -.-....+.+...++++-.+..
T Consensus 72 ~~~~l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~ 149 (268)
T 3ab8_A 72 GEAVLERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPG 149 (268)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECC
Confidence 3455667777777788765 45679999999988 779999988764211 110 0111233344556788876643
No 131
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=23.47 E-value=4.1e+02 Score=24.00 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEC--ChH--HH---HHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEE
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVG--KPE--TV---LVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G--~~~--~~---L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~ 251 (462)
.|+.+-+..+++.+++.|..+.+... +.. .. +.+.+...+++.|+...... . +..+. .+.+.||++.
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~----~~~~~-~l~~~~iPvV 94 (290)
T 2rgy_A 21 SYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDL-H----DEDLD-ELHRMHPKMV 94 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSS-C----HHHHH-HHHHHCSSEE
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCC-C----HHHHH-HHhhcCCCEE
Confidence 36667778888899999999888753 221 22 33333456899888754221 1 11222 3445699999
Q ss_pred EEeC
Q 012490 252 YFWG 255 (462)
Q Consensus 252 ~~~~ 255 (462)
.++.
T Consensus 95 ~~~~ 98 (290)
T 2rgy_A 95 FLNR 98 (290)
T ss_dssp EESS
T ss_pred EEcc
Confidence 8764
No 132
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=23.41 E-value=93 Score=26.70 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCC
Q 012490 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA 219 (462)
Q Consensus 186 ~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a 219 (462)
.++-+.|++.|+++.+..+.....+..+++..|+
T Consensus 76 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l 109 (205)
T 3m9l_A 76 VELVRELAGRGYRLGILTRNARELAHVTLEAIGL 109 (205)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCc
Confidence 3444555666677766666665556666665554
No 133
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.28 E-value=4.4e+02 Score=24.18 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 180 Fl~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
|+.+-+..+++.++++|..+.+... +.. +.+..++. .+++.|++...- ... .+. ..+.+.+.||++..++
T Consensus 17 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~~-~~~--~~~-~~~~~~~~giPvV~~~ 91 (330)
T 3uug_A 17 RWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT-KGVKVLVIASID-GTT--LSD-VLKQAGEQGIKVIAYD 91 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCSS-GGG--GHH-HHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH-cCCCEEEEEcCC-chh--HHH-HHHHHHHCCCCEEEEC
Confidence 6666678888899999999988763 332 33444444 589998875421 111 112 2334566799999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 92 ~~ 93 (330)
T 3uug_A 92 RL 93 (330)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 134
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=23.18 E-value=2e+02 Score=30.72 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHH
Q 012490 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233 (462)
Q Consensus 187 ~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~ 233 (462)
+.-+.|++.|+++.+..|+.......++++.|++.++.. ..|..+
T Consensus 464 ~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~--~~P~~K 508 (645)
T 3j08_A 464 PAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAE--VLPHQK 508 (645)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECS--CCTTCH
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEe--CCHHhH
Confidence 334456778999999999999999999999999988774 445544
No 135
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=23.08 E-value=2.4e+02 Score=25.93 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=43.9
Q ss_pred HHHhCCCcEEEEECChHHHHHHHHHHhCCCE-E-------EEe-c-cC---CchHHHHHHHHHHHhhhcCCeEEEEeCCe
Q 012490 191 NLQARGSDLVVRVGKPETVLVELAKAIGADA-V-------YAH-R-EV---SHDEVKSEEKIEAAMKDEGIEVKYFWGST 257 (462)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~-V-------~~~-~-ey---~p~e~~rd~~v~~~l~~~gI~v~~~~~~~ 257 (462)
.|++.|+.+.+..|.+...+..++++++... + +++ . ++ .+-....-+.+.+.+++.|+.+..+.+..
T Consensus 32 ~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 111 (288)
T 1nrw_A 32 QAQRDGIEVVVSTGRAHFDVMSIFEPLGIKTWVISANGAVIHDPEGRLYHHETIDKKRAYDILSWLESENYYYEVFTGSA 111 (288)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHHGGGTCCCEEEEGGGTEEECTTCCEEEECCCCHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCeEEEcCCCcEEEEeeCCHHHHHHHHHHHHHCCcEEEEEeCCE
Confidence 4567899999999999888888888877643 2 221 1 10 01112223456667788899888776555
Q ss_pred ee
Q 012490 258 LY 259 (462)
Q Consensus 258 L~ 259 (462)
.+
T Consensus 112 ~~ 113 (288)
T 1nrw_A 112 IY 113 (288)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 136
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=22.99 E-value=3e+02 Score=24.98 Aligned_cols=70 Identities=7% Similarity=0.058 Sum_probs=45.5
Q ss_pred HHHhCCCcEEEEECChHHHHHHHHHHhCCC-EEEE-------e--ccC---CchHHHHHHHHHHHhhhcCCeEEEEeCCe
Q 012490 191 NLQARGSDLVVRVGKPETVLVELAKAIGAD-AVYA-------H--REV---SHDEVKSEEKIEAAMKDEGIEVKYFWGST 257 (462)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~-~V~~-------~--~ey---~p~e~~rd~~v~~~l~~~gI~v~~~~~~~ 257 (462)
+|++.|+.+.+..|.+...+..+.+..+.. -+++ + .+. .+-....-+.+.+.+++.|+.+..+.+..
T Consensus 34 ~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (290)
T 3dnp_A 34 YVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLHEKY 113 (290)
T ss_dssp HHHHTTCEEEEBCSSCHHHHHHHHHHTTCCSCEEEGGGTEEESSTTSCSEECCCCHHHHHHHHHHHHTSSCEEEEECSSC
T ss_pred HHHHCCCEEEEECCCChHHHHHHHHHcCCCCeEEEcCCeEEEcCCCCEEEecCCCHHHHHHHHHHHHHcCceEEEEECCc
Confidence 446779999999999988888898888765 2221 1 110 01112233456677788899988777765
Q ss_pred eee
Q 012490 258 LYH 260 (462)
Q Consensus 258 L~~ 260 (462)
.+-
T Consensus 114 ~~~ 116 (290)
T 3dnp_A 114 SIG 116 (290)
T ss_dssp EEE
T ss_pred EEe
Confidence 553
No 137
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=22.88 E-value=1.2e+02 Score=25.51 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCC
Q 012490 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA 219 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a 219 (462)
.+.++-+.|++.|+++.+..+...+.+..+.+..++
T Consensus 88 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~ 123 (216)
T 2pib_A 88 GVREALEFVKSKRIKLALATSTPQREALERLRRLDL 123 (216)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCCCEEEEeCCcHHhHHHHHHhcCh
Confidence 344555667777888888877776767777776664
No 138
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=22.46 E-value=1.5e+02 Score=24.85 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCC----CEEEEeccC
Q 012490 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREV 228 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~ey 228 (462)
..+.++-+.|++.|+++.+..+...+.+..+++..++ +.++...++
T Consensus 92 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 141 (214)
T 3e58_A 92 PDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQGFFDIVLSGEEF 141 (214)
T ss_dssp TTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGC
T ss_pred chHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHhheeeEeecccc
Confidence 3455666777888999999888877778888887765 456555543
No 139
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=22.37 E-value=4.4e+02 Score=23.87 Aligned_cols=73 Identities=8% Similarity=0.010 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEC----ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEE
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVG----KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G----~~~---~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~ 251 (462)
.|+.+-+..+++.++++|..+.+... +.. +.+..++ ..+++.|++.... .... +..+ +.+.+.||++.
T Consensus 16 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~-~~~~--~~~~-~~~~~~giPvV 90 (297)
T 3rot_A 16 PYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESAL-ATYPSGIATTIPS-DTAF--SKSL-QRANKLNIPVI 90 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHH-HTCCSEEEECCCC-SSTT--HHHH-HHHHHHTCCEE
T ss_pred chHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHH-HcCCCEEEEeCCC-HHHH--HHHH-HHHHHCCCCEE
Confidence 46666677888888899999998863 333 2333333 3589988875321 1111 1222 33455799999
Q ss_pred EEeCC
Q 012490 252 YFWGS 256 (462)
Q Consensus 252 ~~~~~ 256 (462)
.++..
T Consensus 91 ~~~~~ 95 (297)
T 3rot_A 91 AVDTR 95 (297)
T ss_dssp EESCC
T ss_pred EEcCC
Confidence 87654
No 140
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=22.30 E-value=4.4e+02 Score=23.82 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEC--ChHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVG--KPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G--~~~~--~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
.|+.+-+..+++.+++.|..+.+... +... .+.+.+...+++.|+....... +..++ .+.+.||++..++
T Consensus 29 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~-~l~~~~iPvV~~~ 102 (289)
T 2fep_A 29 IFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-----DEHVA-EFKRSPVPIVLAA 102 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-----HHHHH-HHHHSSSCEEEES
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-----HHHHH-HHHhcCCCEEEEc
Confidence 46666678888889999999988753 3221 2223334568998887542111 12233 3456799999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 103 ~~ 104 (289)
T 2fep_A 103 SV 104 (289)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 141
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=22.08 E-value=1.5e+02 Score=24.64 Aligned_cols=41 Identities=5% Similarity=-0.130 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCE
Q 012490 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA 221 (462)
Q Consensus 181 l~esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~ 221 (462)
.+..|.++.+++++.|+.++.+.-+..+.+.++++++++.-
T Consensus 48 ~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~ 88 (161)
T 3drn_A 48 EASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPF 88 (161)
T ss_dssp HHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCc
Confidence 45678999999999898888887777788888888888763
No 142
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=22.00 E-value=2e+02 Score=25.82 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=42.7
Q ss_pred HHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEE--------------eccCCchHHHHHHHHHHHhhhcCCeEEEEeCC
Q 012490 191 NLQARGSDLVVRVGKPETVLVELAKAIGADAVYA--------------HREVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256 (462)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~--------------~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~~ 256 (462)
+|++.|+.+.+..|.+...+..+.++.+...+++ ..... ...-+.+.+.+++.++.+..+...
T Consensus 33 ~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~l~---~~~~~~i~~~~~~~~~~~~~~~~~ 109 (274)
T 3fzq_A 33 LCQKNHCSVVICTGRSMGTIQDDVLSLGVDGYIAGGGNYIQYHGELLYNQSFN---QRLIKEVVCLLKKREVAFSIESQE 109 (274)
T ss_dssp HHHHTTCEEEEECSSCTTTSCHHHHTTCCSEEEETTTTEEEETTEEEEECCCC---HHHHHHHHHHHHHHTCEEEEECSS
T ss_pred HHHHCCCEEEEEeCCChHHHHHHHHHcCCCEEEecCccEEEECCEEEEEcCCC---HHHHHHHHHHHHHCCceEEEEeCC
Confidence 4567799999999988777777777776654222 12112 222345666777788888766555
Q ss_pred eee
Q 012490 257 TLY 259 (462)
Q Consensus 257 ~L~ 259 (462)
.++
T Consensus 110 ~~~ 112 (274)
T 3fzq_A 110 KVF 112 (274)
T ss_dssp CEE
T ss_pred ceE
Confidence 444
No 143
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.97 E-value=3e+02 Score=25.24 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 180 Fl~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
|+.+-+..+++.++++|..+.+... +.. +.+.. +...+++.|++.... .... .. ..+.+.+.||++..++
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~-l~~~~vdgiIi~~~~-~~~~--~~-~~~~~~~~~iPvV~~~ 90 (313)
T 3m9w_A 16 RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIEN-MINRGVDVLVIIPYN-GQVL--SN-VVKEAKQEGIKVLAYD 90 (313)
T ss_dssp TTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHH-HHHTTCSEEEEECSS-TTSC--HH-HHHHHHTTTCEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEeCCC-hhhh--HH-HHHHHHHCCCeEEEEC
Confidence 3444556677888899999998864 332 22333 334588988875432 1110 11 2334466799999876
Q ss_pred CC
Q 012490 255 GS 256 (462)
Q Consensus 255 ~~ 256 (462)
..
T Consensus 91 ~~ 92 (313)
T 3m9w_A 91 RM 92 (313)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 144
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.95 E-value=3e+02 Score=24.79 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECC--hHH--HHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEeC
Q 012490 180 FLIESVSDLRKNLQARGSDLVVRVGK--PET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 180 Fl~esL~~L~~~L~~~Gi~L~v~~G~--~~~--~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (462)
|+.+-+..+++.+++.|..+.+...+ ... .+.+.+...+++.|++.......... ...+.+.+.+.||++..++.
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~-~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 29 IFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTP-NIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCT-THHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCC-cHHHHHHHHhcCCCEEEEec
Confidence 45555677888899999999988632 221 22233335689998885422110000 11223345667999998765
Q ss_pred C
Q 012490 256 S 256 (462)
Q Consensus 256 ~ 256 (462)
.
T Consensus 108 ~ 108 (298)
T 3tb6_A 108 S 108 (298)
T ss_dssp C
T ss_pred C
Confidence 4
No 145
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=21.80 E-value=1.3e+02 Score=29.49 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEecc
Q 012490 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE 227 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~e 227 (462)
+-+..+++-|+..|++.++..|+..+++..|+++ |....++..|
T Consensus 127 ~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~-g~~~~I~S~D 170 (346)
T 2izo_A 127 IMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKL-GLSWAAASQD 170 (346)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHT-TSSSEEECSS
T ss_pred HHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhC-CCeEEEECCC
Confidence 4566777788888998888888888888888775 4433334443
No 146
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=21.78 E-value=2e+02 Score=24.62 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCC----CEEEEeccC
Q 012490 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREV 228 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~ey 228 (462)
.+.++-+.|++.|+++.+..+...+.+..+.+..++ +.++...++
T Consensus 100 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 148 (230)
T 3um9_A 100 DVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNSFDHLISVDEV 148 (230)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCGGGCSEEEEGGGT
T ss_pred CHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCChhhcceeEehhhc
Confidence 345555677788899988888777777777777664 456665544
No 147
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=21.47 E-value=1.7e+02 Score=27.52 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCcEEEE-ECChHHHHHHHHHHh--CCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEEe
Q 012490 184 SVSDLRKNLQARGSDLVVR-VGKPETVLVELAKAI--GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~-~G~~~~~L~~L~~~~--~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (462)
+++-|+..+++.|-+++|- .|..-.+|..++.+. ++..|+.+..+.+.+. .+-+++.+++.||+++.+.
T Consensus 42 a~~~l~~a~~~~g~~i~Va~SGkDS~vLL~Ll~~~~~~i~vv~iDtg~~~~et--~~~v~~~~~~~gi~l~v~~ 113 (275)
T 2goy_A 42 PQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPET--YRFIDQVREHYGIAIDVLS 113 (275)
T ss_dssp HHHHHHHHHHHHSTTEEEECCSSTTHHHHHHHHHHCTTCCEEEECCSCCCHHH--HHHHHHHHHHHTCCCEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeecHHHHHHHHHHHHhCCCceEEEEeCCCCCHHH--HHHHHHHHHHHCCeEEEEe
Confidence 3444555555555455443 277667888888876 4667888877765443 3456677777899888654
No 148
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=21.36 E-value=3.3e+02 Score=24.33 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEC--C----------hHHHHHHHHHHhCCCEEEEeccCCc---hH---HHHHHHHHHHhhh
Q 012490 184 SVSDLRKNLQARGSDLVVRVG--K----------PETVLVELAKAIGADAVYAHREVSH---DE---VKSEEKIEAAMKD 245 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G--~----------~~~~L~~L~~~~~a~~V~~~~ey~p---~e---~~rd~~v~~~l~~ 245 (462)
.+.++++.|++.|+.+..+.. . ..+...+++++.|+..|.++..... .. .+.-+.+.+.+++
T Consensus 52 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~ 131 (272)
T 2q02_A 52 NYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFAR 131 (272)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 467888899999998865542 1 1234456778899999987643221 11 2223445555677
Q ss_pred cCCeEE
Q 012490 246 EGIEVK 251 (462)
Q Consensus 246 ~gI~v~ 251 (462)
.||.+-
T Consensus 132 ~gv~l~ 137 (272)
T 2q02_A 132 YDIQGL 137 (272)
T ss_dssp TTCEEE
T ss_pred cCCEEE
Confidence 888765
No 149
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=21.31 E-value=2.2e+02 Score=26.09 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEC---------Ch---------HHHHHHHHHHhCCCEEEEecc
Q 012490 183 ESVSDLRKNLQARGSDLVVRVG---------KP---------ETVLVELAKAIGADAVYAHRE 227 (462)
Q Consensus 183 esL~~L~~~L~~~Gi~L~v~~G---------~~---------~~~L~~L~~~~~a~~V~~~~e 227 (462)
+.+.++++.|++.|+.+..+.. ++ .....+++++.|+..|.++..
T Consensus 64 ~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g 126 (287)
T 3kws_A 64 GRVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPA 126 (287)
T ss_dssp GGHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSC
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3478899999999999865431 11 123446778899999988643
No 150
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=21.04 E-value=1.9e+02 Score=25.27 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCC----CEEEEeccC
Q 012490 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREV 228 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~ey 228 (462)
.+.++-+.|++.|+++.+..+.....+..+++..|+ +.++...++
T Consensus 109 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 157 (240)
T 2no4_A 109 DAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDL 157 (240)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGT
T ss_pred CHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcHHHcCEEEEcccc
Confidence 445555667888999999988877777788887775 456665544
No 151
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=20.87 E-value=3.4e+02 Score=24.51 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCcEEEEECC-----------------------hHHHHHHHHHHhCCCEEEEec
Q 012490 185 VSDLRKNLQARGSDLVVRVGK-----------------------PETVLVELAKAIGADAVYAHR 226 (462)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G~-----------------------~~~~L~~L~~~~~a~~V~~~~ 226 (462)
++++++.|++.|+.+..+... ..+...+++++.|+..|.++.
T Consensus 50 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~ 114 (269)
T 3ngf_A 50 ADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALALDCRTLHAMS 114 (269)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHHHHHHHTTCCEEECCB
T ss_pred HHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 588899999999998875411 123344677889999988754
No 152
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=20.86 E-value=2e+02 Score=24.51 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHHHHhCCC
Q 012490 182 IESVSDLRKNLQARGS-DLVVRVGKPETVLVELAKAIGAD 220 (462)
Q Consensus 182 ~esL~~L~~~L~~~Gi-~L~v~~G~~~~~L~~L~~~~~a~ 220 (462)
+..|.++.+++++.|+ .++.+.-+..+.+.++++++++.
T Consensus 52 ~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~ 91 (167)
T 2wfc_A 52 LPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGAD 91 (167)
T ss_dssp HHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 4557788888889999 89888877778889999998876
No 153
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.84 E-value=4.6e+02 Score=23.52 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEC--ChH---HHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHHHhhhcCCeEEEE
Q 012490 179 SFLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (462)
Q Consensus 179 ~Fl~esL~~L~~~L~~~Gi~L~v~~G--~~~---~~L~~L~~~~~a~~V~~~~ey~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (462)
.|+.+-+..+++.+++.|..+.+... +.. +.+..+. ..+++.|+.... ..... ...+ +.+.+.||++..+
T Consensus 14 ~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~-~~~~~--~~~~-~~~~~~~iPvV~~ 88 (283)
T 2ioy_A 14 PFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLI-QQKVDVLLINPV-DSDAV--VTAI-KEANSKNIPVITI 88 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS-STTTT--HHHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-chhhh--HHHH-HHHHHCCCeEEEe
Confidence 36666777888888999999988753 332 2344444 568998887432 11211 1123 2345679999887
Q ss_pred eC
Q 012490 254 WG 255 (462)
Q Consensus 254 ~~ 255 (462)
+.
T Consensus 89 ~~ 90 (283)
T 2ioy_A 89 DR 90 (283)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 154
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=20.83 E-value=1.4e+02 Score=25.02 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCCc-EEEEECChHHHHHHHHHHhCC
Q 012490 182 IESVSDLRKNLQARGSD-LVVRVGKPETVLVELAKAIGA 219 (462)
Q Consensus 182 ~esL~~L~~~L~~~Gi~-L~v~~G~~~~~L~~L~~~~~a 219 (462)
+..|.++.+++++.|+. ++.+.-+..+.+.++++++++
T Consensus 56 ~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~ 94 (162)
T 1tp9_A 56 VPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPE 94 (162)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCC
Confidence 45688888899999999 988887777889999999988
No 155
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.66 E-value=2.9e+02 Score=26.12 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCcEEEEEC-ChHHHHHHHHHHhCCCEEEEe
Q 012490 185 VSDLRKNLQARGSDLVVRVG-KPETVLVELAKAIGADAVYAH 225 (462)
Q Consensus 185 L~~L~~~L~~~Gi~L~v~~G-~~~~~L~~L~~~~~a~~V~~~ 225 (462)
|++|.+.+++.|++.++..- ........++++.|+..++.+
T Consensus 226 l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld 267 (291)
T 1pq4_A 226 LKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLD 267 (291)
T ss_dssp HHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEEc
Confidence 56666677777777777653 233455566677777766654
No 156
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=20.58 E-value=1.4e+02 Score=26.56 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=9.0
Q ss_pred HhCCCcEEEEECChHHHHHHHHHH
Q 012490 193 QARGSDLVVRVGKPETVLVELAKA 216 (462)
Q Consensus 193 ~~~Gi~L~v~~G~~~~~L~~L~~~ 216 (462)
++.|+++.|..+.....+..+++.
T Consensus 127 ~~~g~~~~i~t~~~~~~~~~~l~~ 150 (243)
T 2hsz_A 127 KAQGYILAVVTNKPTKHVQPILTA 150 (243)
T ss_dssp HHTTCEEEEECSSCHHHHHHHHHH
T ss_pred HHCCCEEEEEECCcHHHHHHHHHH
Confidence 333444444433333333333333
No 157
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=20.55 E-value=3e+02 Score=23.67 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHHHHhCC----CEEEEecc
Q 012490 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHRE 227 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a----~~V~~~~e 227 (462)
.+.++=+.|++.|+++.+..+.....+..+++..++ +.++...+
T Consensus 99 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~ 146 (232)
T 1zrn_A 99 EVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDP 146 (232)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEESGG
T ss_pred cHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChHhhhheEEEecc
Confidence 344555567777888888887777777777777664 45555544
No 158
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=20.38 E-value=1.9e+02 Score=25.28 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCc-EEEEECChHHHHHHHHHHhCCC---EEEEe
Q 012490 182 IESVSDLRKNLQARGSD-LVVRVGKPETVLVELAKAIGAD---AVYAH 225 (462)
Q Consensus 182 ~esL~~L~~~L~~~Gi~-L~v~~G~~~~~L~~L~~~~~a~---~V~~~ 225 (462)
+..|.++.++++++|+. ++.+..+..+...++++++++. .++.+
T Consensus 77 ~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D 124 (184)
T 3uma_A 77 LPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSD 124 (184)
T ss_dssp HHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEc
Confidence 45678888899999999 8888888888899999999986 44443
No 159
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=20.34 E-value=2.3e+02 Score=30.65 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCcEEEEECChHHHHHHHHHHhCCCEEEEeccCCchHH
Q 012490 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233 (462)
Q Consensus 187 ~L~~~L~~~Gi~L~v~~G~~~~~L~~L~~~~~a~~V~~~~ey~p~e~ 233 (462)
+.-+.|++.|+++.+..|+.......++++.|++.++.. ..|..+
T Consensus 542 ~~i~~l~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~--~~P~~K 586 (723)
T 3j09_A 542 PAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAE--VLPHQK 586 (723)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECS--CCTTCH
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCcEEEcc--CCHHHH
Confidence 333456778999999999999999999999999988774 445544
No 160
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=20.27 E-value=1.2e+02 Score=24.28 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCEEEEeccC------CchHHHHHHHHHHHhhhcCCeEEEEeC
Q 012490 207 ETVLVELAKAIGADAVYAHREV------SHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (462)
Q Consensus 207 ~~~L~~L~~~~~a~~V~~~~ey------~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (462)
.+.|.+++++++++.|+.---. ++.. ++-++..+.|++.++++..++.
T Consensus 40 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~-~~~~~f~~~L~~~~lpV~~~DE 93 (98)
T 1iv0_A 40 VEALLDFVRREGLGKLVVGLPLRTDLKESAQA-GKVLPLVEALRARGVEVELWDE 93 (98)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCCCSSSCCCS-STTHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeeccCCCCCcCHHH-HHHHHHHHHHhcCCCCEEEECC
Confidence 4667778888888888776322 1111 1112233333333788876654
No 161
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=20.21 E-value=3.4e+02 Score=23.03 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECChH---HHHHHHHHHhCC----CEEEEecc
Q 012490 181 LIESVSDLRKNLQARGSDLVVRVGKPE---TVLVELAKAIGA----DAVYAHRE 227 (462)
Q Consensus 181 l~esL~~L~~~L~~~Gi~L~v~~G~~~---~~L~~L~~~~~a----~~V~~~~e 227 (462)
++.++.++=+.|++.|+++.|..+.+. +.+..+++..|+ +.|+...+
T Consensus 35 ~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~ 88 (189)
T 3ib6_A 35 LRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNS 88 (189)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCT
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEccc
Confidence 445666667778889999999997765 788888888886 45666554
No 162
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A
Probab=20.16 E-value=3.3e+02 Score=28.70 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCCcEEEEE----C------ChHHHHHHHHHHhCCCEEEEe-----ccCCch-HHHHHHHHHH---Hhh
Q 012490 184 SVSDLRKNLQARGSDLVVRV----G------KPETVLVELAKAIGADAVYAH-----REVSHD-EVKSEEKIEA---AMK 244 (462)
Q Consensus 184 sL~~L~~~L~~~Gi~L~v~~----G------~~~~~L~~L~~~~~a~~V~~~-----~ey~p~-e~~rd~~v~~---~l~ 244 (462)
.|.++-+..++.|..|+++= | +....|.+++++.|+..||.| +|+.|. ....-+++++ .|+
T Consensus 109 ~l~~~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~~l~~~a~~~g~~~v~vH~f~DGRD~~p~S~~~~~~~l~~~~~~~~ 188 (561)
T 3igz_B 109 GYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVR 188 (561)
T ss_dssp HHHHHHHHHTSTTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCEEEEEEEECSSSSCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEeccCCCccchHHHHHHHHHHHHHcCCCeEEEEEEccCCCCCcchHHHHHHHHHHHHHHHH
Confidence 45566666677899999972 3 234556677788999999887 466555 3333455653 488
Q ss_pred hcCC--eEEEEeCCeeeeCC
Q 012490 245 DEGI--EVKYFWGSTLYHLD 262 (462)
Q Consensus 245 ~~gI--~v~~~~~~~L~~p~ 262 (462)
+.|+ ++-++-++..+-.+
T Consensus 189 ~~g~~g~iasv~GRyyvaMD 208 (561)
T 3igz_B 189 QNGCDAAIASGGGRMFVTMD 208 (561)
T ss_dssp TTTCEEEEEEEEETTTSSCC
T ss_pred hcCCCceEEEEeccchhhcC
Confidence 8888 88888888763333
Done!