Query 012491
Match_columns 462
No_of_seqs 499 out of 1057
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 10:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 3.3E-38 1.1E-42 300.8 22.7 369 16-424 51-431 (451)
2 3o7q_A L-fucose-proton symport 100.0 1.1E-36 3.8E-41 289.1 27.8 341 15-415 48-421 (438)
3 4gc0_A D-xylose-proton symport 100.0 2.3E-35 7.8E-40 284.2 19.5 387 35-447 57-482 (491)
4 2gfp_A EMRD, multidrug resista 100.0 4.4E-35 1.5E-39 272.1 16.2 327 26-411 30-361 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 4.5E-33 1.5E-37 268.2 22.8 402 16-423 36-468 (491)
6 2cfq_A Lactose permease; trans 100.0 1.8E-30 6.1E-35 244.1 12.9 354 16-422 30-395 (417)
7 2xut_A Proton/peptide symporte 100.0 4.9E-28 1.7E-32 234.9 16.9 152 16-171 35-198 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 5.7E-13 2E-17 126.3 15.6 171 244-422 27-202 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.5 8.6E-13 3E-17 126.6 15.8 172 245-423 13-193 (491)
10 2cfq_A Lactose permease; trans 99.4 4.7E-13 1.6E-17 125.4 8.1 139 36-174 262-402 (417)
11 3o7q_A L-fucose-proton symport 99.4 6.4E-12 2.2E-16 118.6 14.9 149 249-404 30-183 (438)
12 2xut_A Proton/peptide symporte 99.3 9.6E-12 3.3E-16 120.3 14.3 171 244-421 11-193 (524)
13 2gfp_A EMRD, multidrug resista 99.2 2.3E-11 7.7E-16 112.3 8.7 159 251-417 6-165 (375)
14 4gc0_A D-xylose-proton symport 99.0 4.7E-10 1.6E-14 107.5 9.5 139 38-177 317-468 (491)
15 2dw3_A Intrinsic membrane prot 36.3 84 0.0029 20.2 4.7 31 149-179 31-61 (77)
16 2nrg_A Intrinsic membrane prot 23.5 1.6E+02 0.0054 19.2 4.6 33 149-181 32-64 (82)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.3e-38 Score=300.78 Aligned_cols=369 Identities=12% Similarity=0.062 Sum_probs=281.8
Q ss_pred hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhc----cchhHHHHH
Q 012491 16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAI 90 (462)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~ 90 (462)
+|.+.++ + .++.+.++ +.+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++++ ++|++.+++
T Consensus 51 ~~~~~~~---~-~s~~~~g~--~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (451)
T 1pw4_A 51 MPYLVEQ---G-FSRGDLGF--ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124 (451)
T ss_dssp HHHTTSS---T-TCSSCHHH--HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHH
T ss_pred HHHHHHH---h-ccHhHHHH--HHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 5544443 6 77777555 9999999999999999999 9999999999999999999999999 999999999
Q ss_pred HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc-hHHHHHHHHHHHHHHHHHHh
Q 012491 91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAF 169 (462)
Q Consensus 91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~ 169 (462)
+|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..| ||+.|++.++++++..++.+
T Consensus 125 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~ 204 (451)
T 1pw4_A 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888 99999999998888777777
Q ss_pred hccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHH
Q 012491 170 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV 249 (462)
Q Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (462)
+..||++++.+.+++++...+ .+ + +.++.++++ ...+ ....++++++|.++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~----------~~-----~----~~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~ 256 (451)
T 1pw4_A 205 AMMRDTPQSCGLPPIEEYKND----------YP-----D----DYNEKAEQE-------LTAK--QIFMQYVLPNKLLWY 256 (451)
T ss_dssp HHCCCSSTTTCCCSCTTTCCC---------------------------------------CCT--HHHHHHTSSCHHHHH
T ss_pred hhccCCHhhcCCCChhhhccc----------cc-----c----cchhhhhcc-------cccc--cchHHHHHcCHHHHH
Confidence 777776544322111110000 00 0 000000000 0000 011467788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhh--ccccccchhHHHHHHHHHH
Q 012491 250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM--GATISNAFKLLSAATFLGA 326 (462)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~ 326 (462)
..+..++..........+.|.|+++.++.++... .......++.+++.++.|++.||+ ++| +.+.....+..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~ 331 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHH
Confidence 9888888888888999999999998888886555 445777888999999999999999 877 66555554444
Q ss_pred -HHHHHHHHh--hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012491 327 -ISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN 403 (462)
Q Consensus 327 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 403 (462)
...+..... .+.+......++.+++.+...+....+..+..|++.|+++.|+.+...+.+|..++|.+.|.+.|..|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333332 24555566666677777777777778889999999999999999655554388899999999999876
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 012491 404 NWRKTTLALTSIFFLAAGIWF 424 (462)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~ 424 (462)
+...++..+++.+++.++.+
T Consensus 412 -~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 412 -WDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp -SHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666555444
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.1e-36 Score=289.10 Aligned_cols=341 Identities=15% Similarity=0.165 Sum_probs=270.8
Q ss_pred HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhh---hccchhHHHHH
Q 012491 15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAI 90 (462)
Q Consensus 15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~ 90 (462)
.+|.+.++ ++.++.+.++ +.+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++ ++++|++.+++
T Consensus 48 ~~~~~~~~---~g~s~~~~g~--~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 48 LLPQFQQA---FTLTNFQAGL--IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHH---SCCCSHHHHH--HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHH---cCCCHHHHHH--HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 35644444 7888888655 9999999999999999999 99999999999999999999999 89999999999
Q ss_pred HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh-cccc--------------------
Q 012491 91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLN-------------------- 149 (462)
Q Consensus 91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~g-------------------- 149 (462)
+|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+. +..+
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKH 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999988 5554
Q ss_pred -----hHHHHHHHHHHHHHHHHHHhhc-cccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccc
Q 012491 150 -----WRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG 223 (462)
Q Consensus 150 -----wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (462)
||+.|++.+++.++..++.++. .||++++.++++++
T Consensus 203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------------------------------------- 244 (438)
T 3o7q_A 203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ-------------------------------------- 244 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST--------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc--------------------------------------
Confidence 9999988887776666555443 23322110000000
Q ss_pred cccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHhCCCcchh-hhhhhHHHhhhhhhhhhh
Q 012491 224 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGG 301 (462)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 301 (462)
++..+++++++++|.++...+..++..........+.|.| +++.+|.++... .......++.+++.++.+
T Consensus 245 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 245 --------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp --------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0012356788999999999988888888888888999999 888878886555 445677888899999999
Q ss_pred HHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHH
Q 012491 302 FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV 381 (462)
Q Consensus 302 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (462)
++.||+++| +.+..+..+..+..+.....++.+. .....+.+++.+...+.......+.+|++ ++.+.++..
T Consensus 317 ~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 388 (438)
T 3o7q_A 317 WLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV- 388 (438)
T ss_dssp HHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred HHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence 999999998 7777766666666655555555443 34446667777777777788878888876 888888874
Q ss_pred HHhhhccccchhHHHHHHhhhcchhHHHHHHHHH
Q 012491 382 SIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI 415 (462)
Q Consensus 382 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 415 (462)
... +|..++|.+.|++.|..|+++..+.+.+++
T Consensus 389 ~~~-~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 389 MTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 444 589999999999999988677777655444
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.3e-35 Score=284.24 Aligned_cols=387 Identities=13% Similarity=0.082 Sum_probs=246.2
Q ss_pred chhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhh------------------ccchhHHHHHHHHHh
Q 012491 35 SSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCG------------------SSFDFWSIAICRMLV 95 (462)
Q Consensus 35 ~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~ 95 (462)
.+++.+.+.+|.++++++.|++ ||+|||+++.++.+++.+++++++ +++|+++++++|+++
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~ 136 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG 136 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence 4669999999999999999999 999999999999999999999988 478999999999999
Q ss_pred hcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc--------cchHHHHHHHHHHHHHHHHH
Q 012491 96 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH--------LNWRYAFWGEAILMLPFAVL 167 (462)
Q Consensus 96 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~gwr~~f~~~~~~~~~~~~~ 167 (462)
|++.|...+..+.+++|+.|+++|++..++.+.+...|.++++.++..+... .+||+.+.+..+..++..+
T Consensus 137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 215 (491)
T 4gc0_A 137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM- 215 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-
Confidence 9999999999999999999999999999999999999999999888776532 4588888887776655544
Q ss_pred HhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHH
Q 012491 168 AFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY 247 (462)
Q Consensus 168 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (462)
..+..||++++...+++.++..+ ..++....+. ..++..+..+... ..+. .......++.+..
T Consensus 216 ~~~~~peSp~~L~~~~~~~~a~~--~l~~~~~~~~---~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~ 278 (491)
T 4gc0_A 216 LLYTVPESPRWLMSRGKQEQAEG--ILRKIMGNTL---ATQAVQEIKHSLD-----------HGRK-TGGRLLMFGVGVI 278 (491)
T ss_dssp HGGGSCCCHHHHHHTTCHHHHHH--HHHHHHHHHH---HHHHHHHHHHHHH-----------HHHH-HTTHHHHSCCTHH
T ss_pred hhhcCCCChHHHHHcCchhHHHH--hHHHhcCCch---hHHHHHHHHHHHH-----------hhhh-hhhHHHHhcccHH
Confidence 44455888776433322221100 0000000000 0000000000000 0000 0111223333333
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012491 248 VVNVLGY-IAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA 326 (462)
Q Consensus 248 ~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 326 (462)
....... +......+.+..+.|.+.++....+...........+..+++.++++++.||+||| +.+........
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~ 353 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMA 353 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHH
Confidence 3333322 33333455666677766665433333333444667788889999999999999998 66655554444
Q ss_pred HHHHHHHHh----hhhHHHHHHHHHHHHHHHhccccc-eeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh
Q 012491 327 ISCLTAFCL----SSLYGFLALFTVGELLVFATQAPV-NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 401 (462)
Q Consensus 327 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 401 (462)
+..+..... .+.+..+....+...+.+....+. +.+..|.+|++.|+++.|+.+...+. ++++++.+.+.+.+.
T Consensus 354 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~-~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 354 IGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWL-ANYFVSWTFPMMDKN 432 (491)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHH-HHHHHHTHHHHHCHH
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 433322211 122333333344444444444443 45677888899999999999655555 888888887776553
Q ss_pred hc-----chhHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhhhcccCchh
Q 012491 402 VN-----NWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQISLDS 447 (462)
Q Consensus 402 ~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 447 (462)
.. +....+++.+++.+++.+. .+.++|| |+|+.||+|+..+++.
T Consensus 433 ~~~~~~~~~~~~~~i~~~~~~~~~i~--~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 433 SWLVAHFHNGFSYWIYGCMGVLAALF--MWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH--HHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHH--HHheecCCCCCCHHHHHHHhCCCC
Confidence 21 1223455555444443332 2346676 8899999888776543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=4.4e-35 Score=272.15 Aligned_cols=327 Identities=15% Similarity=0.049 Sum_probs=258.2
Q ss_pred cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012491 26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS 104 (462)
Q Consensus 26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 104 (462)
++.++.+.+. ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.++.++++|++.+++.|+++|++.+...+
T Consensus 30 ~g~s~~~~g~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 107 (375)
T 2gfp_A 30 LNVREGAVQS--VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGV 107 (375)
T ss_dssp SSSTTHHHHH--HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhh
Confidence 7888888555 9999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012491 105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES 184 (462)
Q Consensus 105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 184 (462)
...+++.|++|+++|++++++.+.+..+|..++|.+++.+.++.+||+.|++.++..++..+..++..||++++.+++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
T 2gfp_A 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTR 187 (375)
T ss_dssp HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCC
T ss_pred hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccccc
Confidence 99999999999999999999999999999999999999999989999999999888777766555666664322110000
Q ss_pred cccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012491 185 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY 264 (462)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (462)
. .++.++++++|.++...+..++........
T Consensus 188 ---~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T 2gfp_A 188 ---L----------------------------------------------LTSYKTLFGNSGFNCYLLMLIGGLAGIAAF 218 (375)
T ss_dssp ---T----------------------------------------------TTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---H----------------------------------------------HHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 0 112346678888888888888888888889
Q ss_pred HHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH-HHHHHHHHHHHH--hhhhHH
Q 012491 265 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT-FLGAISCLTAFC--LSSLYG 340 (462)
Q Consensus 265 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~ 340 (462)
..+.|.++++..|.++... .......++.+++.++.+++.||.+++ ....... ............ .++.+.
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (375)
T 2gfp_A 219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCLLAGLLMWIPDWFGVMNVWT 293 (375)
T ss_dssp HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-----HHHHHHHHHHTSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhccccHHH
Confidence 9999999998777776554 444667788888888999999988763 3222222 111111111111 234555
Q ss_pred HHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHH
Q 012491 341 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA 411 (462)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 411 (462)
..+...+.+++.+...+.......+..| ++|+++.|+.+...+. |..++|.+.|.+.+..+ +...+..
T Consensus 294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~~-~~~~~~~ 361 (375)
T 2gfp_A 294 LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNI-GSGVLASLSAMLPQTGQ-GSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHH-HHHCCSTTCTHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHH-HHHHHHHHHHHHhcCCc-ccHHHHH
Confidence 5666777788888888888888888887 8999999999766665 99999999999987643 5554444
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=4.5e-33 Score=268.20 Aligned_cols=402 Identities=11% Similarity=-0.031 Sum_probs=256.7
Q ss_pred hhhhhhhc---cccccccccccchhhHHHHHHHHHhhhhhhccc-cc-cCCchhHHHHHHHHHHHHHhhhccchhHHHHH
Q 012491 16 LKRSMKKK---KFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI 90 (462)
Q Consensus 16 ~p~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (462)
+|.++.++ .+++.+..+.+. +.+.+.++..+++++.|++ || +|||+++..+.++.+++.+++++++|++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAAS--IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFG 113 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHH
T ss_pred HHHHHHhccchhhcCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44455443 346778887555 9999999999999999999 99 89999999999999999999999999999999
Q ss_pred HHHHhhcccccccccccchhcccCCCCC--chhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 012491 91 CRMLVGVGEASFISLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA 168 (462)
Q Consensus 91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 168 (462)
+|+++|++.+...+...+++.|++|+++ |++++++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+..
T Consensus 114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 77788889999999999999999999999999999999888776666655
Q ss_pred hhccccccCCCCCcccccccccccccccccccc------------ccccccccccchhhhhhhhc--cccccchhhhhcc
Q 012491 169 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASN------------LNDHVSEDISDQASERSIKS--IGESRFLNQLSQF 234 (462)
Q Consensus 169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 234 (462)
++..|+..++..++++.+.. +++..+..+... .......+.++......... .........+++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (491)
T 4aps_A 194 YFGGKKTLDPHYLRPTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSV 272 (491)
T ss_dssp HHHHHTTCCSCCSCCSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHhCcccccccccCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcc
Confidence 55444432221111110000 000000000000 00000000000000000000 0000000000000
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcch-hhhhhhHHHhhhhhhhhhhHHHhhhcccccc
Q 012491 235 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISN 313 (462)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 313 (462)
..+.++..+....+...+..............+.|.|.++..+.+... ........+..+++.++.+++.||++||...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~ 352 (491)
T 4aps_A 273 KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS 352 (491)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC
Confidence 000011112222334444444455555566677888888877776333 3445667788888899999999999988443
Q ss_pred chhHHHHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHh
Q 012491 314 AFKLLSAATFLGAISCLTAFCL---------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIH 384 (462)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (462)
....+..+..+........... .+.+......++.+++.+...+....+..+..|++.|+++.|+.+...+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2233334444444433333222 1445556666777777777788888899999999999999999976666
Q ss_pred hhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 012491 385 IFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW 423 (462)
Q Consensus 385 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 423 (462)
. |..++|.+.+.+.+. ++...+...+.+.+++.++.
T Consensus 433 ~-g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 433 V-GSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp H-HHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHH
Confidence 5 999999998888774 34456665555544444433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=1.8e-30 Score=244.06 Aligned_cols=354 Identities=12% Similarity=0.008 Sum_probs=227.9
Q ss_pred hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHH---HhhhccchhH-HHHH
Q 012491 16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAI 90 (462)
Q Consensus 16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~ 90 (462)
+|.+++++ ++.++.+.+. +.+.+.++..+++++.|++ ||+|||+++..+..+++++. ...++++... .++.
T Consensus 30 ~~~~l~~~--~g~s~~~~g~--~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (417)
T 2cfq_A 30 FPIWLHDI--NHISKSDTGI--IFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105 (417)
T ss_dssp HHHHHHTT--TCCCTTTSHH--HHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCH
T ss_pred HHHHHHHH--hCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555443 6778888655 9999999999999999999 99999999999888775532 2123332221 2455
Q ss_pred HHHHhhcccccccccccchhcccCCC--CCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 012491 91 CRMLVGVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA 168 (462)
Q Consensus 91 ~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 168 (462)
.+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++..+..
T Consensus 106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~ 184 (417)
T 2cfq_A 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHH
Confidence 67777777776665555556555543 456777888888899999999999999887 589999998877654444433
Q ss_pred hhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHH
Q 012491 169 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV 248 (462)
Q Consensus 169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (462)
++..||+++. .++++.. + ++ + ++ ...++.++++++|.++
T Consensus 185 ~~~~~~~~~~---~~~~~~~-------------~-----~~--~-------~~-----------~~~~~~~~~~~~~~~~ 223 (417)
T 2cfq_A 185 FFAKTDAPSS---ATVANAV-------------G-----AN--H-------SA-----------FSLKLALELFRQPKLW 223 (417)
T ss_dssp CSSCCCCSCS---SCSSSSS-------------S-----SC--C-------CC-----------CCHHHHHHHTTCHHHH
T ss_pred HHcCcccccc---ccccccc-------------c-----cc--c-------cc-----------ccHHHHHHHhcCCchh
Confidence 3332332110 0000000 0 00 0 00 0012355678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCC---cchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHH
Q 012491 249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL 324 (462)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 324 (462)
...+..+........+..+.|.|+.+.++.. .... ....+..++.+++.++.++++||++|| +.+..+..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~ 298 (417)
T 2cfq_A 224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHH
Confidence 7766555555555556667888887655422 1112 233455667788899999999999998 766655555
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHH-HHHHhhhccccchhHHHHHHhhhc
Q 012491 325 GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS-TVSIHIFGDVPSSPLVGVLQDHVN 403 (462)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~l~~~~g 403 (462)
..+........++.+..++...+.+++.....+....+..+..|++.|+++.+.. +...+ +|++++|.+.|++.|..|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-lg~~~gp~l~G~l~~~~g 377 (417)
T 2cfq_A 299 MSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ-LAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp HHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHH-HHHHHHTHHHHTHHHHSH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh-HHHHHhhhhHHHHHHhcC
Confidence 5544444333344444444444445544444444566788889999999999985 44444 488999999999998765
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 012491 404 NWRKTTLALTSIFFLAAGI 422 (462)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~ 422 (462)
+...+...+++.+++.++
T Consensus 378 -~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 378 -FQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHH
Confidence 666666666655554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=4.9e-28 Score=234.90 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=133.9
Q ss_pred hhhhhhhccccc------cccccccchhhHHHHHHHHHhhhhhhccc-ccc-CCchhHHHHHHHHHHHHHhhhccc-hhH
Q 012491 16 LKRSMKKKKFLS------LRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSH-NPFRLIGVGLSVWTFATAGCGSSF-DFW 86 (462)
Q Consensus 16 ~p~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~ 86 (462)
+|.++.++ ++ .++.+.+. +.+.+.++..++.++.|++ ||+ |||+++..+.++.+++.+++++++ |++
T Consensus 35 l~~~l~~~--~~~~~~~~~s~~~~g~--~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (524)
T 2xut_A 35 LTPFLMTA--LLLSIPEELRGAVAKD--VFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ 110 (524)
T ss_dssp HHHHHHHS--CSSCCSSSTTTTTHHH--HHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHH--hccccccccCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 55555544 55 77777555 9999999999999999999 999 999999999999999999999999 999
Q ss_pred HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHH---HHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHH
Q 012491 87 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP 163 (462)
Q Consensus 87 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~ 163 (462)
.+++.|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.++.|||+.|++.+++.++
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877666 99999999999999999999989999999999887666
Q ss_pred HHHHHhhc
Q 012491 164 FAVLAFVI 171 (462)
Q Consensus 164 ~~~~~~~~ 171 (462)
..+..++.
T Consensus 191 ~~~~~~~~ 198 (524)
T 2xut_A 191 ATVFFWLG 198 (524)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHHh
Confidence 55554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.48 E-value=5.7e-13 Score=126.32 Aligned_cols=171 Identities=16% Similarity=0.094 Sum_probs=132.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH
Q 012491 244 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 322 (462)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 322 (462)
.+.+....+..+........+...+|.+.++. .++.+. ...+...++..++.++.|+++||+||| +.+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch-----HHHHHHH
Confidence 34455555555666666666667778776664 565444 555778889999999999999999999 8888877
Q ss_pred HHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHH
Q 012491 323 FLGAISCLTAFC----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL 398 (462)
Q Consensus 323 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l 398 (462)
.+..+..+.... .++.+..++..++.+++.+...+....++.+.+|+++|+++.++.+..... |.+++|.+.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH-HHTSHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 777777777666 677788888888889998888888899999999999999999999766665 999999999998
Q ss_pred HhhhcchhHHHHHHHHHHHHHHHH
Q 012491 399 QDHVNNWRKTTLALTSIFFLAAGI 422 (462)
Q Consensus 399 ~~~~g~~~~~~~~~~~~~~~~~~~ 422 (462)
.+..|+|+..+++.+.+.++..++
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~ 202 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALF 202 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHH
Confidence 887665877777776665444433
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.46 E-value=8.6e-13 Score=126.56 Aligned_cols=172 Identities=11% Similarity=0.039 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----hCCCcchh-hhhhhHHHhhhhhhhhhhHHHhh-hccccccchhH
Q 012491 245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-----YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKL 317 (462)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~ 317 (462)
+.++......++.....+....+++.|+++. +|.++.+. ...+...++..++.++.|+++|| +||| +.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----~~ 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-----PA 87 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HH
Confidence 4566666667777788888888999999988 88887665 45578889999999999999999 8999 88
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcch--hhHHHHHHHHHHhhhccccchhHH
Q 012491 318 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL--RALSMAISTVSIHIFGDVPSSPLV 395 (462)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~ 395 (462)
+..+..+..+..+.....++.+..++..++.+++.+...+....++.+.+|+++ |+.+.+..+...+. |..++|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~ 166 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINL-GAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHH-HHHHHHHHH
Confidence 888887777777777777788888888888899988888888999999999987 77788877666565 999999999
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 012491 396 GVLQDHVNNWRKTTLALTSIFFLAAGIW 423 (462)
Q Consensus 396 g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 423 (462)
+.+.+..| |+..++..+...+++.+..
T Consensus 167 ~~l~~~~g-~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 167 GAAQEAAG-YHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh-HHHHHHHHHHHHHHHHHHH
Confidence 99998866 8888877766555544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.39 E-value=4.7e-13 Score=125.40 Aligned_cols=139 Identities=8% Similarity=-0.008 Sum_probs=119.6
Q ss_pred hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccC
Q 012491 36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA 114 (462)
Q Consensus 36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 114 (462)
++..+...++..++.++.+++ ||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 446777778888899999999 9999999999999999888888888888888888888888887766777788999999
Q ss_pred CCCCchhHHHH-HHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012491 115 PVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 174 (462)
Q Consensus 115 ~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~ 174 (462)
|++.|+++.++ ++....+|..++|.+++.+.++.|++..|.+.+++.++..++.++..||
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999998 5888889999999999999998899999999888877777666665554
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.37 E-value=6.4e-12 Score=118.59 Aligned_cols=149 Identities=9% Similarity=0.034 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHH
Q 012491 249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI 327 (462)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 327 (462)
...+..+.............|. +.+.++.+..+. ...+...++..++.++.|+++||+||| +.+..+..+..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~l~~~~~~~~~ 103 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----HHHHHHHHHHHH
Confidence 3334344455555566666776 455578887665 455788889999999999999999999 888777777777
Q ss_pred HHHHH---HHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHH-hhhc
Q 012491 328 SCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ-DHVN 403 (462)
Q Consensus 328 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~-~~~g 403 (462)
..++. ...++.+..++..++.|++.+...+....++.+..|+++|+.+.++.+...+. |..++|.+.+.+. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF-GAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH-HHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccc
Confidence 66665 55677888888888899999988888899999999999999999999766665 9999999999998 5444
Q ss_pred c
Q 012491 404 N 404 (462)
Q Consensus 404 ~ 404 (462)
.
T Consensus 183 ~ 183 (438)
T 3o7q_A 183 H 183 (438)
T ss_dssp C
T ss_pred c
Confidence 3
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.34 E-value=9.6e-12 Score=120.31 Aligned_cols=171 Identities=12% Similarity=0.007 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC------CCcchh-hhhhhHHHhhhhhhhhhhHHHhhh-ccccccch
Q 012491 244 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH------MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAF 315 (462)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~ 315 (462)
++.++...+..++.....+....++|.|+.+..+ .++... ...+...++..++.++.|+++||+ |||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----- 85 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----- 85 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 3455666666777777888888899999988888 776555 455778888899999999999999 998
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHH---HHHHHhhhccccc
Q 012491 316 KLLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI---STVSIHIFGDVPS 391 (462)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~ 391 (462)
+.+..+..+..+..++....+ +.+..++..++.+++.+...+....++.+.+|+++|+++.+. .+...+. |..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~~g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF-GSFFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH-HHHHH
Confidence 777777777766666666666 777777778888888888888889999999999999776666 6555555 88999
Q ss_pred hhHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 012491 392 SPLVGVLQDHVNNWRKTTLALTSIFFLAAG 421 (462)
Q Consensus 392 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 421 (462)
|.+.+.+.+..| |+..+.+.+...++..+
T Consensus 165 ~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 165 SLSMPLLLKNFG-AAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHTSTHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHHHH
Confidence 999999988765 77777766665444433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.21 E-value=2.3e-11 Score=112.29 Aligned_cols=159 Identities=14% Similarity=0.067 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHH
Q 012491 251 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 329 (462)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 329 (462)
.+..++............|.+.+ .++.++.+. ...+...++..++.++.|+++||+||| +.+..+..+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMAR-DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR-----PVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHH
Confidence 33444555555556666676544 467776555 455778888999999999999999998 67777777766666
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHH
Q 012491 330 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT 409 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 409 (462)
......++.+..++...+.+++.+...+....++.+..|+++|+++.+..+..... |..++|.+.+++.+..+ |+..+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~ 157 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILV-SPLLAPLIGGLLDTMWN-WRACY 157 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHH-HHHHHHHHHHHSSCHHH-HHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhcc-HHHHH
Confidence 66666677888888888888888888888888899999999999999999766655 99999999999988765 76666
Q ss_pred HHHHHHHH
Q 012491 410 LALTSIFF 417 (462)
Q Consensus 410 ~~~~~~~~ 417 (462)
...+...+
T Consensus 158 ~~~~~~~~ 165 (375)
T 2gfp_A 158 LFLLVLCA 165 (375)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.04 E-value=4.7e-10 Score=107.46 Aligned_cols=139 Identities=8% Similarity=0.018 Sum_probs=103.5
Q ss_pred hHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc-----chhHHHH-HHHHHhhcccccccccccchh
Q 012491 38 NVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIA-ICRMLVGVGEASFISLAAPFI 110 (462)
Q Consensus 38 ~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~-~~r~l~G~~~g~~~~~~~~~i 110 (462)
......+...++.++++++ ||+|||+.++.+.....++.+..+.. ++...+. +.-+..+.+.+ ..+....+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 395 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLL 395 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 5566677788888999999 99999999999888888777665532 1222222 22222233322 345667899
Q ss_pred cccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc------ccchHHHHHHHHHHHHHHHHHHhhccccccC
Q 012491 111 DDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 177 (462)
Q Consensus 111 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~ 177 (462)
+|.+|.+.|++++++......+|..+++.+...+.+ ..++.+.|++.++++++..++.++++||+..
T Consensus 396 ~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 999999999999999999999999988887765543 3456778899999998988888888998743
No 15
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=36.33 E-value=84 Score=20.23 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=15.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 012491 149 NWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 179 (462)
Q Consensus 149 gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 179 (462)
||-.++.+...+.++..-.+=.++||..+..
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 4555555554444444444444568765544
No 16
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=23.49 E-value=1.6e+02 Score=19.18 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 012491 149 NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP 181 (462)
Q Consensus 149 gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~ 181 (462)
||-.++.+...+.++..-.+=.++||..+..+.
T Consensus 32 G~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP~ 64 (82)
T 2nrg_A 32 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPA 64 (82)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCCC
Confidence 455555555444444433444456876555433
Done!