Query 012492
Match_columns 462
No_of_seqs 205 out of 2537
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02605 monogalactosyldiacylg 100.0 2.3E-49 5.1E-54 397.3 42.8 378 65-443 1-381 (382)
2 PRK13608 diacylglycerol glucos 100.0 1E-46 2.2E-51 378.9 41.5 366 60-443 3-371 (391)
3 PRK13609 diacylglycerol glucos 100.0 2.9E-42 6.4E-47 346.2 40.5 368 61-446 3-374 (380)
4 COG0707 MurG UDP-N-acetylgluco 100.0 5.1E-37 1.1E-41 299.5 30.9 338 63-442 1-356 (357)
5 PRK12446 undecaprenyldiphospho 100.0 2.3E-34 5.1E-39 284.0 30.6 336 62-439 1-351 (352)
6 PRK00726 murG undecaprenyldiph 100.0 1.7E-31 3.6E-36 266.0 31.5 345 62-442 1-356 (357)
7 cd03785 GT1_MurG MurG is an N- 100.0 1.9E-31 4.1E-36 264.7 30.7 338 64-435 1-349 (350)
8 TIGR01133 murG undecaprenyldip 100.0 8.7E-30 1.9E-34 252.6 30.4 338 63-437 1-348 (348)
9 cd04962 GT1_like_5 This family 100.0 3.2E-27 7E-32 235.9 32.8 350 63-443 1-370 (371)
10 PRK00025 lpxB lipid-A-disaccha 100.0 5E-27 1.1E-31 235.8 32.3 348 62-445 1-379 (380)
11 PLN02871 UDP-sulfoquinovose:DA 100.0 1.3E-26 2.9E-31 238.5 31.9 339 60-439 56-429 (465)
12 TIGR00215 lpxB lipid-A-disacch 100.0 8.7E-26 1.9E-30 226.0 28.8 343 63-439 6-384 (385)
13 cd04951 GT1_WbdM_like This fam 99.9 3.2E-25 6.9E-30 220.1 29.8 343 64-442 1-359 (360)
14 PRK10307 putative glycosyl tra 99.9 2.2E-24 4.7E-29 219.0 32.1 263 163-443 105-407 (412)
15 TIGR03449 mycothiol_MshA UDP-N 99.9 1.7E-24 3.7E-29 219.2 28.9 266 163-443 100-401 (405)
16 TIGR03088 stp2 sugar transfera 99.9 6.8E-24 1.5E-28 212.5 31.5 345 63-443 2-372 (374)
17 cd03825 GT1_wcfI_like This fam 99.9 2.3E-23 5.1E-28 207.1 31.8 312 63-443 1-364 (365)
18 cd03819 GT1_WavL_like This fam 99.9 2E-23 4.2E-28 207.1 29.2 267 152-431 66-353 (355)
19 cd03807 GT1_WbnK_like This fam 99.9 3.6E-23 7.9E-28 204.2 31.0 341 64-441 1-364 (365)
20 cd03796 GT1_PIG-A_like This fa 99.9 1.4E-23 2.9E-28 212.2 28.4 266 154-443 78-367 (398)
21 PRK15427 colanic acid biosynth 99.9 1.1E-22 2.4E-27 205.4 33.4 268 155-443 109-405 (406)
22 TIGR02472 sucr_P_syn_N sucrose 99.9 2.4E-23 5.3E-28 212.8 28.4 277 152-442 100-439 (439)
23 TIGR00236 wecB UDP-N-acetylglu 99.9 7.4E-23 1.6E-27 204.4 31.1 271 152-439 74-363 (365)
24 PRK09922 UDP-D-galactose:(gluc 99.9 1.2E-22 2.6E-27 202.4 31.0 333 63-442 1-358 (359)
25 TIGR02149 glgA_Coryne glycogen 99.9 1.4E-22 3.1E-27 203.8 31.8 265 161-443 80-386 (388)
26 PRK15179 Vi polysaccharide bio 99.9 3.3E-22 7.1E-27 210.7 35.0 278 150-442 386-692 (694)
27 cd03823 GT1_ExpE7_like This fa 99.9 3.6E-22 7.8E-27 197.2 32.7 264 151-442 83-358 (359)
28 cd03792 GT1_Trehalose_phosphor 99.9 2.3E-22 4.9E-27 201.5 31.1 265 159-443 80-371 (372)
29 TIGR03492 conserved hypothetic 99.9 2E-22 4.3E-27 202.0 30.3 260 155-440 82-395 (396)
30 PRK15490 Vi polysaccharide bio 99.9 3.8E-22 8.2E-27 201.4 32.2 277 152-444 268-576 (578)
31 cd03814 GT1_like_2 This family 99.9 1.2E-22 2.6E-27 201.1 28.3 265 154-441 73-363 (364)
32 PRK05749 3-deoxy-D-manno-octul 99.9 1.3E-22 2.7E-27 206.9 29.1 337 63-443 51-423 (425)
33 cd03816 GT1_ALG1_like This fam 99.9 2E-22 4.3E-27 204.5 30.2 340 61-426 2-400 (415)
34 cd03800 GT1_Sucrose_synthase T 99.9 2.7E-22 5.9E-27 202.0 30.2 273 152-438 87-397 (398)
35 cd03820 GT1_amsD_like This fam 99.9 2.2E-22 4.9E-27 197.0 28.7 325 64-438 1-347 (348)
36 cd05844 GT1_like_7 Glycosyltra 99.9 3.7E-22 7.9E-27 199.1 30.5 262 153-439 71-366 (367)
37 cd03812 GT1_CapH_like This fam 99.9 2.9E-22 6.4E-27 198.9 28.8 323 64-425 1-346 (358)
38 cd03817 GT1_UGDG_like This fam 99.9 4.9E-22 1.1E-26 197.0 29.9 339 64-442 1-372 (374)
39 cd03801 GT1_YqgM_like This fam 99.9 5.8E-22 1.3E-26 195.1 30.0 343 64-442 1-374 (374)
40 cd03822 GT1_ecORF704_like This 99.9 5.7E-22 1.2E-26 196.6 29.6 335 64-442 1-366 (366)
41 PRK00654 glgA glycogen synthas 99.9 7.3E-22 1.6E-26 203.2 31.1 275 155-443 107-462 (466)
42 cd03808 GT1_cap1E_like This fa 99.9 1.8E-21 4E-26 191.3 30.8 333 64-438 1-358 (359)
43 cd03799 GT1_amsK_like This is 99.9 8.2E-21 1.8E-25 188.0 34.0 328 64-436 1-354 (355)
44 cd03805 GT1_ALG2_like This fam 99.9 7.5E-22 1.6E-26 198.8 26.9 265 159-437 89-392 (392)
45 PRK15484 lipopolysaccharide 1, 99.9 2.6E-21 5.7E-26 194.0 30.6 260 163-443 98-377 (380)
46 PLN02949 transferase, transfer 99.9 6.4E-21 1.4E-25 194.3 33.1 360 58-443 29-456 (463)
47 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 8E-22 1.7E-26 196.7 25.9 268 150-437 74-362 (363)
48 TIGR02095 glgA glycogen/starch 99.9 3.8E-21 8.3E-26 198.6 30.2 275 154-443 116-472 (473)
49 cd03821 GT1_Bme6_like This fam 99.9 4E-21 8.7E-26 190.3 29.2 261 160-438 83-374 (375)
50 cd03818 GT1_ExpC_like This fam 99.9 3.5E-21 7.5E-26 194.5 28.9 262 160-438 83-395 (396)
51 cd03794 GT1_wbuB_like This fam 99.9 2.9E-21 6.4E-26 192.2 27.7 259 161-437 96-393 (394)
52 TIGR02470 sucr_synth sucrose s 99.9 7.1E-21 1.5E-25 200.5 31.7 380 46-441 239-745 (784)
53 TIGR02468 sucrsPsyn_pln sucros 99.9 3E-21 6.6E-26 207.1 28.2 265 164-443 310-670 (1050)
54 PLN02939 transferase, transfer 99.9 2.6E-21 5.6E-26 204.7 27.2 410 5-442 431-965 (977)
55 cd03809 GT1_mtfB_like This fam 99.9 5.8E-21 1.3E-25 189.3 26.7 260 158-438 79-364 (365)
56 cd03798 GT1_wlbH_like This fam 99.9 4E-20 8.8E-25 182.6 32.2 274 151-443 78-376 (377)
57 cd03811 GT1_WabH_like This fam 99.9 8.8E-21 1.9E-25 185.8 26.8 321 64-424 1-346 (353)
58 PLN02316 synthase/transferase 99.9 8.7E-20 1.9E-24 196.6 35.6 269 163-443 708-1033(1036)
59 cd03806 GT1_ALG11_like This fa 99.9 5.4E-21 1.2E-25 193.9 24.4 257 159-434 102-417 (419)
60 TIGR03087 stp1 sugar transfera 99.9 4E-21 8.7E-26 194.1 22.7 270 150-443 90-396 (397)
61 PRK14099 glycogen synthase; Pr 99.9 2.3E-20 5E-25 192.0 27.8 266 161-443 130-478 (485)
62 PF13528 Glyco_trans_1_3: Glyc 99.9 5.5E-21 1.2E-25 187.2 21.6 297 63-405 1-316 (318)
63 PF06925 MGDG_synth: Monogalac 99.9 5.3E-21 1.2E-25 169.3 18.3 169 76-244 1-169 (169)
64 cd03795 GT1_like_4 This family 99.9 5.4E-20 1.2E-24 182.3 27.4 254 160-434 79-357 (357)
65 PRK10125 putative glycosyl tra 99.9 5E-20 1.1E-24 185.7 25.6 336 63-443 1-404 (405)
66 cd03813 GT1_like_3 This family 99.9 2.9E-20 6.2E-25 191.9 24.0 256 163-441 172-474 (475)
67 cd03802 GT1_AviGT4_like This f 99.9 4.1E-19 8.8E-24 174.6 31.1 311 63-441 1-334 (335)
68 PLN00142 sucrose synthase 99.9 5.2E-20 1.1E-24 194.1 25.8 277 152-442 393-769 (815)
69 cd04955 GT1_like_6 This family 99.9 3.7E-19 8.1E-24 176.8 30.3 254 161-442 83-363 (363)
70 TIGR02918 accessory Sec system 99.9 1.6E-19 3.5E-24 185.7 27.5 258 158-443 205-499 (500)
71 PLN02846 digalactosyldiacylgly 99.9 7.6E-20 1.6E-24 184.0 24.3 267 152-449 104-397 (462)
72 TIGR03590 PseG pseudaminic aci 99.9 5.4E-20 1.2E-24 176.1 22.1 269 64-383 1-278 (279)
73 cd03791 GT1_Glycogen_synthase_ 99.9 3.6E-19 7.8E-24 184.2 29.3 276 153-442 116-475 (476)
74 cd03784 GT1_Gtf_like This fami 99.9 3.6E-19 7.8E-24 180.1 27.9 161 265-439 236-400 (401)
75 cd04949 GT1_gtfA_like This fam 99.8 3.4E-19 7.4E-24 178.3 25.0 252 162-437 97-372 (372)
76 PRK14098 glycogen synthase; Pr 99.8 9.7E-19 2.1E-23 180.2 28.2 279 155-443 130-485 (489)
77 TIGR00661 MJ1255 conserved hyp 99.8 9.7E-20 2.1E-24 178.5 14.9 286 64-396 1-300 (321)
78 PLN02501 digalactosyldiacylgly 99.8 2.9E-18 6.2E-23 175.3 23.8 265 150-446 420-712 (794)
79 COG0763 LpxB Lipid A disacchar 99.8 8.9E-17 1.9E-21 153.7 31.7 343 62-442 1-380 (381)
80 COG0381 WecB UDP-N-acetylgluco 99.8 1.5E-16 3.3E-21 152.5 31.8 351 61-442 2-373 (383)
81 COG1519 KdtA 3-deoxy-D-manno-o 99.8 5.1E-17 1.1E-21 157.0 26.4 330 63-439 50-417 (419)
82 PLN02275 transferase, transfer 99.8 4.7E-17 1E-21 162.8 25.4 226 160-407 96-371 (371)
83 COG1819 Glycosyl transferases, 99.8 2.4E-17 5.3E-22 165.3 22.3 168 264-446 233-404 (406)
84 cd04946 GT1_AmsK_like This fam 99.8 6.1E-17 1.3E-21 163.9 25.0 254 161-438 124-406 (407)
85 PHA01633 putative glycosyl tra 99.8 9.5E-17 2.1E-21 155.7 25.0 234 191-439 70-335 (335)
86 TIGR01426 MGT glycosyltransfer 99.8 2E-16 4.4E-21 159.5 26.9 165 266-442 223-391 (392)
87 PHA01630 putative group 1 glyc 99.8 1E-16 2.2E-21 157.0 22.2 228 191-443 69-330 (331)
88 cd03804 GT1_wbaZ_like This fam 99.7 4.5E-16 9.8E-21 154.5 25.4 237 157-436 76-349 (351)
89 TIGR03568 NeuC_NnaA UDP-N-acet 99.7 1.8E-15 3.9E-20 150.4 28.2 268 151-436 80-364 (365)
90 PF02684 LpxB: Lipid-A-disacch 99.7 5.3E-15 1.1E-19 145.1 30.0 318 65-422 1-352 (373)
91 COG3980 spsG Spore coat polysa 99.7 2.9E-15 6.3E-20 136.3 19.8 305 63-433 1-316 (318)
92 PF02350 Epimerase_2: UDP-N-ac 99.7 1.5E-15 3.3E-20 149.4 17.9 269 152-438 55-346 (346)
93 PF04007 DUF354: Protein of un 99.7 8.2E-14 1.8E-18 135.0 28.1 327 63-441 1-334 (335)
94 COG4671 Predicted glycosyl tra 99.7 7.4E-15 1.6E-19 137.6 19.3 348 59-444 6-392 (400)
95 PRK14089 ipid-A-disaccharide s 99.7 4.1E-14 8.8E-19 138.2 24.3 311 62-439 1-346 (347)
96 PRK01021 lpxB lipid-A-disaccha 99.6 3.8E-13 8.2E-18 137.3 31.7 321 63-424 227-585 (608)
97 PF04101 Glyco_tran_28_C: Glyc 99.6 1.9E-17 4.1E-22 146.6 0.4 147 270-421 1-155 (167)
98 KOG1111 N-acetylglucosaminyltr 99.6 6.7E-15 1.5E-19 137.8 13.8 333 64-442 2-365 (426)
99 PHA03392 egt ecdysteroid UDP-g 99.6 6.9E-13 1.5E-17 136.9 30.2 163 268-444 296-468 (507)
100 cd03788 GT1_TPS Trehalose-6-Ph 99.6 6.8E-14 1.5E-18 143.4 22.1 276 148-440 117-458 (460)
101 cd04950 GT1_like_1 Glycosyltra 99.6 2E-13 4.4E-18 136.7 22.6 250 162-444 100-372 (373)
102 PF00534 Glycos_transf_1: Glyc 99.6 3.2E-14 6.9E-19 126.3 14.2 161 254-424 1-172 (172)
103 TIGR02400 trehalose_OtsA alpha 99.5 2.5E-12 5.4E-17 131.1 26.0 274 147-441 112-454 (456)
104 PRK09814 beta-1,6-galactofuran 99.5 1.6E-12 3.6E-17 128.0 23.7 231 156-427 55-315 (333)
105 cd03793 GT1_Glycogen_synthase_ 99.5 4.1E-12 9E-17 129.1 26.9 283 150-442 134-585 (590)
106 cd01635 Glycosyltransferase_GT 99.5 6.1E-12 1.3E-16 115.8 18.6 100 273-376 109-217 (229)
107 PLN03007 UDP-glucosyltransfera 99.4 2E-10 4.4E-15 118.3 29.8 147 256-411 273-441 (482)
108 PLN02670 transferase, transfer 99.4 1.5E-10 3.2E-15 117.9 27.5 179 257-444 267-466 (472)
109 PLN02448 UDP-glycosyltransfera 99.4 9.6E-11 2.1E-15 120.1 26.0 141 257-411 263-416 (459)
110 PLN02208 glycosyltransferase f 99.4 4.1E-10 8.9E-15 114.2 30.2 201 212-424 193-416 (442)
111 PLN02210 UDP-glucosyl transfer 99.4 3.5E-10 7.6E-15 115.4 26.9 160 259-427 260-438 (456)
112 PLN03063 alpha,alpha-trehalose 99.4 1.4E-10 3E-15 125.6 24.7 275 147-441 132-475 (797)
113 PLN00414 glycosyltransferase f 99.4 1.2E-09 2.6E-14 111.0 29.8 220 213-440 193-438 (446)
114 PLN02173 UDP-glucosyl transfer 99.4 4.1E-10 8.9E-15 114.1 25.7 153 258-422 254-419 (449)
115 PLN02863 UDP-glucoronosyl/UDP- 99.3 9.2E-10 2E-14 112.8 28.2 155 256-418 271-442 (477)
116 PLN00164 glucosyltransferase; 99.3 1.2E-09 2.6E-14 112.2 29.2 179 236-423 239-445 (480)
117 COG1817 Uncharacterized protei 99.3 1.4E-09 3.1E-14 100.8 25.8 331 63-442 1-341 (346)
118 PLN02992 coniferyl-alcohol glu 99.3 3.8E-09 8.2E-14 107.9 28.0 179 236-425 233-448 (481)
119 KOG0853 Glycosyltransferase [C 99.2 2.4E-10 5.1E-15 114.2 15.9 226 212-445 209-469 (495)
120 KOG2941 Beta-1,4-mannosyltrans 99.2 1.3E-08 2.9E-13 95.5 25.0 269 158-435 97-437 (444)
121 PLN02534 UDP-glycosyltransfera 99.2 1.5E-08 3.3E-13 103.9 27.2 181 257-445 272-489 (491)
122 KOG1387 Glycosyltransferase [C 99.1 1E-07 2.2E-12 89.6 28.0 268 158-442 144-457 (465)
123 PRK14501 putative bifunctional 99.1 3.6E-09 7.7E-14 114.7 20.5 276 147-443 118-462 (726)
124 PF00201 UDPGT: UDP-glucoronos 99.1 1.9E-09 4.1E-14 112.4 15.7 172 256-442 264-443 (500)
125 TIGR03713 acc_sec_asp1 accesso 99.1 3.5E-09 7.7E-14 109.4 17.0 152 277-441 329-519 (519)
126 PLN02764 glycosyltransferase f 99.0 1.5E-08 3.2E-13 102.7 17.5 180 235-424 225-422 (453)
127 PF13692 Glyco_trans_1_4: Glyc 99.0 1.2E-09 2.6E-14 92.6 8.0 123 271-407 5-133 (135)
128 PLN02554 UDP-glycosyltransfera 99.0 6.5E-08 1.4E-12 99.7 21.9 154 256-418 262-449 (481)
129 PLN02167 UDP-glycosyltransfera 99.0 4.2E-08 9E-13 101.0 19.7 179 256-443 268-473 (475)
130 TIGR02398 gluc_glyc_Psyn gluco 99.0 7.8E-07 1.7E-11 90.8 27.8 193 237-444 250-483 (487)
131 COG0438 RfaG Glycosyltransfera 99.0 1.5E-07 3.4E-12 91.3 22.2 211 213-443 151-376 (381)
132 PRK10017 colanic acid biosynth 98.9 4.6E-06 9.9E-11 84.3 31.6 342 63-423 1-406 (426)
133 PLN02410 UDP-glucoronosyl/UDP- 98.9 7.5E-08 1.6E-12 98.1 19.0 189 212-411 203-411 (451)
134 PLN03004 UDP-glycosyltransfera 98.9 2.6E-08 5.7E-13 101.1 15.6 149 258-415 260-429 (451)
135 PLN02562 UDP-glycosyltransfera 98.9 3.4E-08 7.3E-13 100.8 16.3 152 260-420 265-423 (448)
136 PLN02152 indole-3-acetate beta 98.9 2E-07 4.3E-12 94.9 20.8 145 257-411 250-418 (455)
137 PLN02207 UDP-glycosyltransfera 98.9 1.3E-07 2.8E-12 96.5 19.1 195 213-416 212-434 (468)
138 PLN02555 limonoid glucosyltran 98.8 2.3E-07 5E-12 95.0 19.5 177 257-443 266-470 (480)
139 COG3660 Predicted nucleoside-d 98.8 1.5E-06 3.2E-11 78.9 20.8 197 161-373 67-274 (329)
140 PF13844 Glyco_transf_41: Glyc 98.8 1.7E-07 3.6E-12 94.3 14.7 179 258-443 275-466 (468)
141 PLN03015 UDP-glucosyl transfer 98.7 9.5E-07 2.1E-11 90.0 19.3 186 212-407 204-424 (470)
142 COG0297 GlgA Glycogen synthase 98.7 4.2E-06 9.1E-11 85.2 23.7 272 163-443 129-477 (487)
143 PF04464 Glyphos_transf: CDP-G 98.7 4.7E-07 1E-11 90.6 16.4 220 210-439 132-369 (369)
144 PF13439 Glyco_transf_4: Glyco 98.7 7.1E-08 1.5E-12 85.0 9.2 149 73-249 11-176 (177)
145 TIGR02919 accessory Sec system 98.7 1.4E-06 3E-11 88.3 18.6 188 211-431 238-432 (438)
146 PF06258 Mito_fiss_Elm1: Mitoc 98.7 5.3E-06 1.1E-10 80.3 21.1 192 159-374 52-259 (311)
147 COG3914 Spy Predicted O-linked 98.6 4.2E-05 9.1E-10 77.2 27.1 268 156-443 327-613 (620)
148 PLN03064 alpha,alpha-trehalose 98.6 9.6E-06 2.1E-10 88.4 24.3 274 148-441 217-559 (934)
149 PF13524 Glyco_trans_1_2: Glyc 98.4 9.6E-07 2.1E-11 69.5 7.2 79 353-438 11-91 (92)
150 KOG1192 UDP-glucuronosyl and U 98.4 9.1E-06 2E-10 84.7 16.3 173 269-449 278-461 (496)
151 KOG3349 Predicted glycosyltran 98.3 5.5E-06 1.2E-10 68.9 9.7 131 269-405 4-143 (170)
152 PF13579 Glyco_trans_4_4: Glyc 98.2 1.5E-06 3.2E-11 75.1 5.1 86 154-243 61-160 (160)
153 COG4370 Uncharacterized protei 98.2 0.00021 4.6E-09 66.5 18.2 102 335-440 302-410 (412)
154 PRK10916 ADP-heptose:LPS hepto 98.1 0.00072 1.6E-08 67.1 21.9 110 258-373 170-289 (348)
155 PF04413 Glycos_transf_N: 3-De 98.1 1.7E-05 3.6E-10 71.1 9.1 149 63-243 22-180 (186)
156 TIGR02195 heptsyl_trn_II lipop 98.0 0.002 4.4E-08 63.4 23.2 111 256-373 162-279 (334)
157 PF05693 Glycogen_syn: Glycoge 98.0 0.0021 4.6E-08 66.2 22.0 101 337-439 462-577 (633)
158 PRK10422 lipopolysaccharide co 97.8 0.0032 6.9E-08 62.6 20.7 100 268-373 183-290 (352)
159 PF08660 Alg14: Oligosaccharid 97.7 0.00021 4.5E-09 62.9 9.6 70 157-227 85-161 (170)
160 COG0859 RfaF ADP-heptose:LPS h 97.7 0.006 1.3E-07 60.1 21.0 266 62-373 1-279 (334)
161 PRK02797 4-alpha-L-fucosyltran 97.6 0.026 5.6E-07 53.7 21.6 260 153-444 28-317 (322)
162 cd03789 GT1_LPS_heptosyltransf 97.5 0.016 3.4E-07 55.5 20.1 83 285-373 140-226 (279)
163 PRK10964 ADP-heptose:LPS hepto 97.5 0.021 4.6E-07 55.9 21.4 98 268-373 178-281 (322)
164 KOG4626 O-linked N-acetylgluco 97.4 0.013 2.8E-07 60.0 18.5 266 155-441 649-938 (966)
165 PF00982 Glyco_transf_20: Glyc 97.4 0.051 1.1E-06 55.9 23.2 274 147-439 126-470 (474)
166 COG5017 Uncharacterized conser 97.4 0.0025 5.5E-08 52.3 10.4 122 271-405 2-134 (161)
167 TIGR02193 heptsyl_trn_I lipopo 97.4 0.013 2.8E-07 57.3 17.5 99 267-373 178-282 (319)
168 PF07429 Glyco_transf_56: 4-al 97.2 0.071 1.5E-06 51.5 19.3 217 155-394 69-314 (360)
169 TIGR02201 heptsyl_trn_III lipo 97.1 0.033 7.1E-07 55.1 17.4 100 267-372 180-287 (344)
170 PRK10117 trehalose-6-phosphate 97.1 0.22 4.8E-06 50.9 23.3 272 147-439 108-449 (474)
171 COG4641 Uncharacterized protei 97.1 0.045 9.8E-07 53.2 17.1 255 158-439 71-358 (373)
172 PF13477 Glyco_trans_4_2: Glyc 97.0 0.0045 9.7E-08 52.3 8.9 44 154-201 64-109 (139)
173 PLN02205 alpha,alpha-trehalose 96.9 0.3 6.6E-06 54.0 24.2 262 148-429 186-537 (854)
174 COG1887 TagB Putative glycosyl 96.6 0.22 4.7E-06 50.0 18.8 219 213-439 149-386 (388)
175 PF01075 Glyco_transf_9: Glyco 96.4 0.15 3.2E-06 47.7 15.2 101 266-372 103-210 (247)
176 COG0380 OtsA Trehalose-6-phosp 96.3 1.5 3.3E-05 44.8 24.2 275 148-442 133-478 (486)
177 TIGR03609 S_layer_CsaB polysac 95.6 1.8 4E-05 41.7 19.2 167 190-372 98-277 (298)
178 PF09314 DUF1972: Domain of un 95.3 0.49 1.1E-05 42.1 12.8 162 62-243 1-183 (185)
179 PF05159 Capsule_synth: Capsul 95.3 0.15 3.3E-06 48.4 10.4 46 326-372 181-226 (269)
180 PF04230 PS_pyruv_trans: Polys 95.1 2.8 6.1E-05 39.1 18.6 171 190-372 98-284 (286)
181 PF03033 Glyco_transf_28: Glyc 94.8 0.048 1E-06 46.0 4.7 32 65-100 1-32 (139)
182 COG2327 WcaK Polysaccharide py 94.7 4.9 0.00011 39.9 28.2 212 190-416 123-357 (385)
183 TIGR02094 more_P_ylases alpha- 94.3 2.4 5.2E-05 45.2 17.2 170 264-441 385-598 (601)
184 COG2099 CobK Precorrin-6x redu 94.0 2.6 5.6E-05 39.1 14.4 45 153-198 55-100 (257)
185 TIGR00715 precor6x_red precorr 93.4 5.8 0.00013 37.4 16.2 43 156-199 57-100 (256)
186 TIGR00730 conserved hypothetic 90.4 9.7 0.00021 33.7 13.2 45 329-373 81-135 (178)
187 cd04299 GT1_Glycogen_Phosphory 89.1 16 0.00034 40.2 16.0 170 264-441 474-687 (778)
188 COG0796 MurI Glutamate racemas 86.4 13 0.00028 35.1 11.7 96 60-198 3-98 (269)
189 PRK13195 pyrrolidone-carboxyla 86.4 2.2 4.7E-05 39.1 6.5 29 62-90 1-30 (222)
190 PF00551 Formyl_trans_N: Formy 85.2 6 0.00013 35.1 8.8 27 63-93 1-27 (181)
191 COG0373 HemA Glutamyl-tRNA red 85.0 36 0.00077 34.4 14.7 66 303-373 201-274 (414)
192 PRK13196 pyrrolidone-carboxyla 84.5 3.1 6.6E-05 38.0 6.6 29 62-90 1-30 (211)
193 PF11071 DUF2872: Protein of u 82.2 3.5 7.6E-05 33.9 5.2 66 339-407 67-140 (141)
194 TIGR00725 conserved hypothetic 82.0 30 0.00065 29.9 11.5 36 339-374 86-125 (159)
195 PRK05647 purN phosphoribosylgl 80.8 5.9 0.00013 35.8 6.9 26 62-91 1-26 (200)
196 PF12038 DUF3524: Domain of un 80.6 19 0.00041 31.3 9.4 121 63-229 1-136 (168)
197 PRK06849 hypothetical protein; 77.4 7.8 0.00017 38.9 7.4 84 61-174 3-86 (389)
198 COG1519 KdtA 3-deoxy-D-manno-o 77.1 26 0.00057 35.2 10.5 112 255-372 31-154 (419)
199 KOG3339 Predicted glycosyltran 77.1 7.7 0.00017 34.1 6.0 28 63-92 39-66 (211)
200 PF02844 GARS_N: Phosphoribosy 76.2 15 0.00032 29.1 7.0 32 63-101 1-32 (100)
201 TIGR01470 cysG_Nterm siroheme 75.9 61 0.0013 29.3 12.1 66 303-373 32-103 (205)
202 PRK08057 cobalt-precorrin-6x r 75.2 32 0.0007 32.2 10.3 45 154-199 55-100 (248)
203 TIGR03646 YtoQ_fam YtoQ family 75.0 5.9 0.00013 32.7 4.5 65 340-407 71-143 (144)
204 PRK13197 pyrrolidone-carboxyla 75.0 10 0.00022 34.7 6.8 29 62-90 1-30 (215)
205 PRK10017 colanic acid biosynth 74.0 23 0.00049 36.2 9.6 40 336-375 109-159 (426)
206 PF10087 DUF2325: Uncharacteri 72.5 8.1 0.00018 30.3 4.8 36 337-372 41-83 (97)
207 PRK13768 GTPase; Provisional 72.0 57 0.0012 30.6 11.3 37 62-101 1-37 (253)
208 TIGR00853 pts-lac PTS system, 72.0 11 0.00025 29.4 5.5 67 305-372 5-83 (95)
209 PF10093 DUF2331: Uncharacteri 71.8 45 0.00098 33.2 10.7 109 255-373 168-291 (374)
210 PRK12767 carbamoyl phosphate s 71.6 7.9 0.00017 37.7 5.6 34 62-103 1-34 (326)
211 COG0052 RpsB Ribosomal protein 71.5 15 0.00033 34.0 6.9 60 155-224 142-206 (252)
212 COG1091 RfbD dTDP-4-dehydrorha 71.5 19 0.0004 34.4 7.7 46 156-202 42-103 (281)
213 PF03641 Lysine_decarbox: Poss 71.1 16 0.00034 30.6 6.5 44 330-373 39-93 (133)
214 COG0299 PurN Folate-dependent 70.2 21 0.00046 31.8 7.3 35 152-186 67-101 (200)
215 PRK00865 glutamate racemase; P 69.8 76 0.0016 29.9 11.6 91 63-196 6-96 (261)
216 cd05565 PTS_IIB_lactose PTS_II 69.4 14 0.0003 29.2 5.4 66 305-372 2-80 (99)
217 PRK13193 pyrrolidone-carboxyla 68.7 18 0.00039 32.9 6.8 28 63-90 1-29 (209)
218 PF08323 Glyco_transf_5: Starc 68.3 11 0.00023 35.3 5.5 50 151-201 118-173 (245)
219 cd05564 PTS_IIB_chitobiose_lic 68.2 11 0.00024 29.5 4.7 67 306-373 2-80 (96)
220 PRK13194 pyrrolidone-carboxyla 68.0 17 0.00038 33.0 6.5 28 63-90 1-29 (208)
221 PF04413 Glycos_transf_N: 3-De 67.8 31 0.00067 30.7 8.1 97 269-372 22-126 (186)
222 PF01470 Peptidase_C15: Pyrogl 67.2 14 0.00031 33.4 5.8 36 63-98 1-37 (202)
223 PF05014 Nuc_deoxyrib_tr: Nucl 66.2 6.6 0.00014 31.7 3.2 35 339-373 56-98 (113)
224 PRK05294 carB carbamoyl phosph 66.0 20 0.00043 41.3 8.0 42 61-105 553-599 (1066)
225 PF00731 AIRC: AIR carboxylase 65.6 87 0.0019 26.8 10.4 79 345-423 56-145 (150)
226 TIGR00639 PurN phosphoribosylg 65.4 33 0.00071 30.7 7.7 25 63-91 1-25 (190)
227 PRK12815 carB carbamoyl phosph 64.8 21 0.00045 41.1 7.9 42 61-105 554-600 (1068)
228 PF15024 Glyco_transf_18: Glyc 62.6 47 0.001 34.7 9.1 103 332-444 327-456 (559)
229 cd00550 ArsA_ATPase Oxyanion-t 62.2 1.4E+02 0.0029 28.0 11.7 29 64-92 1-29 (254)
230 PRK00994 F420-dependent methyl 61.7 64 0.0014 29.7 8.7 40 158-197 54-93 (277)
231 PRK06756 flavodoxin; Provision 61.7 17 0.00037 30.8 5.1 31 62-92 1-31 (148)
232 PRK13940 glutamyl-tRNA reducta 61.5 1.3E+02 0.0029 30.5 12.1 64 306-373 207-273 (414)
233 PRK05579 bifunctional phosphop 58.8 90 0.0019 31.5 10.3 68 340-407 78-181 (399)
234 PLN02496 probable phosphopanto 58.7 75 0.0016 28.9 8.7 55 340-394 92-168 (209)
235 COG0716 FldA Flavodoxins [Ener 58.5 16 0.00034 31.3 4.3 31 62-92 1-31 (151)
236 PLN02764 glycosyltransferase f 58.3 56 0.0012 33.6 8.9 34 63-100 6-39 (453)
237 COG0062 Uncharacterized conser 57.4 1.3E+02 0.0028 27.2 10.0 35 341-375 116-162 (203)
238 PRK14098 glycogen synthase; Pr 57.3 16 0.00035 38.0 4.9 33 60-93 3-41 (489)
239 PRK05562 precorrin-2 dehydroge 57.1 1.5E+02 0.0033 27.2 10.6 66 303-373 48-119 (223)
240 COG0132 BioD Dethiobiotin synt 56.3 18 0.00039 33.3 4.4 32 61-92 1-32 (223)
241 PRK06718 precorrin-2 dehydroge 54.9 1.6E+02 0.0035 26.5 10.5 45 328-373 55-103 (202)
242 PLN02410 UDP-glucoronosyl/UDP- 54.7 88 0.0019 32.2 9.7 34 63-100 8-41 (451)
243 PRK06703 flavodoxin; Provision 53.7 26 0.00056 29.8 4.9 30 62-91 1-30 (151)
244 PLN02735 carbamoyl-phosphate s 52.6 16 0.00035 42.0 4.3 42 61-105 573-619 (1102)
245 TIGR00067 glut_race glutamate 51.9 1.8E+02 0.0038 27.3 10.5 32 65-102 1-32 (251)
246 PF00448 SRP54: SRP54-type pro 51.8 1.3E+02 0.0028 26.9 9.3 38 64-102 2-39 (196)
247 PRK05920 aromatic acid decarbo 51.6 85 0.0018 28.4 8.0 37 358-394 124-163 (204)
248 COG2805 PilT Tfp pilus assembl 51.4 94 0.002 30.1 8.3 38 63-101 125-162 (353)
249 TIGR03609 S_layer_CsaB polysac 51.3 1.5E+02 0.0033 28.2 10.4 66 302-374 27-109 (298)
250 PF04321 RmlD_sub_bind: RmlD s 51.1 32 0.0007 32.8 5.6 30 63-100 1-30 (286)
251 COG2039 Pcp Pyrrolidone-carbox 50.7 56 0.0012 29.1 6.3 28 63-90 1-29 (207)
252 PF02302 PTS_IIB: PTS system, 50.7 51 0.0011 25.0 5.7 66 305-371 1-74 (90)
253 PF06564 YhjQ: YhjQ protein; 50.5 30 0.00064 32.3 5.0 39 62-103 1-39 (243)
254 PRK03767 NAD(P)H:quinone oxido 50.3 32 0.00069 30.9 5.1 37 62-102 1-39 (200)
255 cd03129 GAT1_Peptidase_E_like 48.7 1.4E+02 0.003 26.9 9.1 37 336-372 72-122 (210)
256 COG2894 MinD Septum formation 48.3 46 0.00099 30.6 5.5 37 62-101 1-38 (272)
257 PRK13982 bifunctional SbtC-lik 48.1 84 0.0018 32.5 8.2 68 340-407 142-246 (475)
258 PRK09590 celB cellobiose phosp 47.9 60 0.0013 25.9 5.7 67 305-372 3-83 (104)
259 cd01537 PBP1_Repressors_Sugar_ 47.9 2.1E+02 0.0046 25.8 12.0 37 160-200 51-88 (264)
260 PRK12311 rpsB 30S ribosomal pr 47.8 94 0.002 30.4 8.1 31 164-198 152-182 (326)
261 TIGR01012 Sa_S2_E_A ribosomal 46.9 56 0.0012 29.4 5.9 32 163-198 107-138 (196)
262 TIGR01369 CPSaseII_lrg carbamo 46.8 49 0.0011 38.1 7.0 41 61-104 553-598 (1050)
263 COG1927 Mtd Coenzyme F420-depe 45.8 2.3E+02 0.005 25.6 11.2 54 352-407 74-128 (277)
264 PRK09267 flavodoxin FldA; Vali 45.8 25 0.00053 30.6 3.6 26 62-88 1-27 (169)
265 PRK06027 purU formyltetrahydro 45.7 47 0.001 31.9 5.7 29 58-90 85-113 (286)
266 TIGR00655 PurU formyltetrahydr 45.4 83 0.0018 30.1 7.3 21 153-173 149-169 (280)
267 TIGR01011 rpsB_bact ribosomal 45.3 1.2E+02 0.0027 27.8 8.2 32 163-198 154-185 (225)
268 PRK08105 flavodoxin; Provision 45.2 38 0.00082 28.9 4.5 31 62-92 1-31 (149)
269 PF02441 Flavoprotein: Flavopr 45.2 1.1E+02 0.0023 25.3 7.2 34 339-372 68-118 (129)
270 PF10933 DUF2827: Protein of u 44.9 33 0.00072 33.7 4.5 114 301-427 219-347 (364)
271 PRK09271 flavodoxin; Provision 44.6 46 0.001 28.6 5.1 30 63-92 1-30 (160)
272 PRK00994 F420-dependent methyl 44.5 74 0.0016 29.3 6.2 54 352-407 74-128 (277)
273 PRK04020 rps2P 30S ribosomal p 44.2 64 0.0014 29.2 5.9 32 163-198 113-144 (204)
274 COG3967 DltE Short-chain dehyd 43.3 66 0.0014 29.3 5.7 35 269-315 6-40 (245)
275 PRK12446 undecaprenyldiphospho 43.1 1E+02 0.0022 30.5 7.8 28 345-372 92-122 (352)
276 PRK05299 rpsB 30S ribosomal pr 43.1 1.3E+02 0.0029 28.3 8.1 32 163-198 156-187 (258)
277 PLN02285 methionyl-tRNA formyl 42.8 61 0.0013 31.9 6.1 17 156-172 85-101 (334)
278 PF11997 DUF3492: Domain of un 42.6 49 0.0011 31.4 5.3 35 164-201 172-206 (268)
279 CHL00175 minD septum-site dete 42.6 51 0.0011 31.3 5.5 36 64-102 17-52 (281)
280 PTZ00254 40S ribosomal protein 42.3 61 0.0013 30.3 5.6 32 163-198 117-148 (249)
281 PF03435 Saccharop_dh: Sacchar 42.3 1.9E+02 0.0041 28.9 9.8 63 307-370 26-97 (386)
282 COG0371 GldA Glycerol dehydrog 42.0 1.2E+02 0.0026 30.1 7.9 69 305-373 32-117 (360)
283 cd00501 Peptidase_C15 Pyroglut 40.8 92 0.002 27.8 6.5 29 63-91 1-30 (194)
284 TIGR01007 eps_fam capsular exo 40.6 56 0.0012 29.2 5.2 38 62-102 17-54 (204)
285 TIGR01162 purE phosphoribosyla 40.3 2.4E+02 0.0053 24.3 12.0 30 345-374 54-86 (156)
286 cd05566 PTS_IIB_galactitol PTS 40.0 94 0.002 23.5 5.7 62 305-372 2-71 (89)
287 PF01745 IPT: Isopentenyl tran 40.0 59 0.0013 29.7 5.0 34 63-102 1-34 (233)
288 PRK05568 flavodoxin; Provision 39.8 68 0.0015 26.7 5.3 38 62-102 1-38 (142)
289 COG0027 PurT Formate-dependent 39.7 71 0.0015 30.9 5.6 77 60-175 10-86 (394)
290 COG4088 Predicted nucleotide k 39.2 37 0.00081 30.8 3.5 31 63-93 1-31 (261)
291 PF01408 GFO_IDH_MocA: Oxidore 38.8 2E+02 0.0043 22.8 8.2 64 302-372 24-94 (120)
292 PRK05569 flavodoxin; Provision 38.8 73 0.0016 26.5 5.3 37 62-101 1-37 (141)
293 COG2327 WcaK Polysaccharide py 38.5 1.3E+02 0.0028 30.1 7.5 36 338-373 83-133 (385)
294 PF10087 DUF2325: Uncharacteri 38.0 31 0.00067 26.9 2.7 34 163-196 47-80 (97)
295 TIGR03837 efp_adjacent_2 conse 38.0 3.8E+02 0.0083 26.7 10.5 107 257-373 169-289 (371)
296 PF12000 Glyco_trans_4_3: Gkyc 37.9 1E+02 0.0023 27.0 6.2 31 162-197 64-94 (171)
297 PLN00203 glutamyl-tRNA reducta 37.9 3.3E+02 0.0072 28.6 10.9 38 336-373 321-369 (519)
298 PRK05749 3-deoxy-D-manno-octul 37.6 3.2E+02 0.0069 27.5 10.8 97 267-371 49-154 (425)
299 cd01425 RPS2 Ribosomal protein 37.5 96 0.0021 27.7 6.1 34 161-198 124-157 (193)
300 PF02374 ArsA_ATPase: Anion-tr 36.6 61 0.0013 31.4 5.0 35 63-100 1-35 (305)
301 PRK09004 FMN-binding protein M 36.4 68 0.0015 27.2 4.7 31 62-92 1-31 (146)
302 COG0541 Ffh Signal recognition 36.4 4.9E+02 0.011 26.6 14.2 80 354-441 256-340 (451)
303 COG1440 CelA Phosphotransferas 36.2 1.2E+02 0.0027 23.9 5.6 68 305-372 3-81 (102)
304 COG3414 SgaB Phosphotransferas 36.2 31 0.00067 26.9 2.3 47 305-352 3-57 (93)
305 PRK13011 formyltetrahydrofolat 35.8 1.2E+02 0.0025 29.2 6.7 20 154-173 155-174 (286)
306 PRK07308 flavodoxin; Validated 35.4 80 0.0017 26.5 5.1 31 62-92 1-31 (146)
307 cd02032 Bchl_like This family 35.4 62 0.0013 30.4 4.8 36 63-102 1-36 (267)
308 PLN02735 carbamoyl-phosphate s 35.4 42 0.00092 38.7 4.2 41 61-104 22-67 (1102)
309 PRK13886 conjugal transfer pro 35.3 78 0.0017 29.5 5.2 38 62-102 1-39 (241)
310 PRK13185 chlL protochlorophyll 35.2 72 0.0016 30.0 5.2 38 62-102 1-38 (270)
311 PRK11104 hemG protoporphyrinog 35.1 65 0.0014 28.4 4.5 28 63-92 1-29 (177)
312 COG1152 CdhA CO dehydrogenase/ 34.7 2.1E+02 0.0045 30.2 8.4 73 329-401 284-370 (772)
313 PRK14099 glycogen synthase; Pr 34.6 64 0.0014 33.5 5.1 32 61-93 2-39 (485)
314 COG4635 HemG Flavodoxin [Energ 34.5 83 0.0018 27.2 4.7 37 63-102 1-37 (175)
315 PRK10427 putative PTS system f 34.3 92 0.002 25.3 4.9 31 62-92 2-34 (114)
316 PF01488 Shikimate_DH: Shikima 34.1 1.9E+02 0.004 24.0 7.0 67 304-372 36-108 (135)
317 PRK13232 nifH nitrogenase redu 34.1 68 0.0015 30.3 4.9 37 62-102 1-37 (273)
318 PRK09932 glycerate kinase II; 33.9 1.8E+02 0.004 29.1 7.8 52 336-390 276-339 (381)
319 PRK10310 PTS system galactitol 33.6 61 0.0013 25.2 3.7 46 305-352 4-58 (94)
320 PF12146 Hydrolase_4: Putative 33.5 1.2E+02 0.0026 22.6 5.1 38 62-103 15-52 (79)
321 cd06559 Endonuclease_V Endonuc 33.4 59 0.0013 29.5 4.0 43 156-198 83-128 (208)
322 PRK10037 cell division protein 33.4 75 0.0016 29.6 5.0 38 62-102 1-38 (250)
323 PLN02331 phosphoribosylglycina 33.2 1.4E+02 0.0031 27.0 6.5 19 155-173 69-87 (207)
324 PRK00207 sulfur transfer compl 33.2 1.1E+02 0.0024 25.3 5.4 37 63-99 1-39 (128)
325 PRK12374 putative dithiobiotin 33.2 61 0.0013 29.8 4.2 29 64-92 4-32 (231)
326 TIGR01761 thiaz-red thiazoliny 33.0 2E+02 0.0043 28.4 7.9 98 303-407 27-134 (343)
327 TIGR02069 cyanophycinase cyano 33.0 3.6E+02 0.0079 25.2 9.4 35 337-371 75-123 (250)
328 PRK01077 cobyrinic acid a,c-di 32.7 58 0.0013 33.5 4.4 31 62-92 3-33 (451)
329 PRK13789 phosphoribosylamine-- 32.6 1.2E+02 0.0026 30.9 6.6 33 61-100 3-35 (426)
330 CHL00067 rps2 ribosomal protei 32.5 2.8E+02 0.0061 25.6 8.4 32 163-198 160-191 (230)
331 COG1149 MinD superfamily P-loo 32.5 64 0.0014 30.5 4.1 36 62-101 1-36 (284)
332 PRK10342 glycerate kinase I; P 32.4 2E+02 0.0044 28.8 7.9 52 336-390 276-339 (381)
333 COG3613 Nucleoside 2-deoxyribo 32.3 44 0.00095 29.2 2.8 34 340-373 64-107 (172)
334 TIGR02113 coaC_strep phosphopa 32.3 65 0.0014 28.4 4.0 39 358-396 106-150 (177)
335 TIGR01754 flav_RNR ribonucleot 32.3 62 0.0013 27.1 3.8 30 63-92 1-30 (140)
336 COG3563 KpsC Capsule polysacch 31.7 1.8E+02 0.0039 29.9 7.3 60 309-372 193-252 (671)
337 cd05567 PTS_IIB_mannitol PTS_I 31.5 83 0.0018 23.9 4.1 64 305-372 2-73 (87)
338 PF12996 DUF3880: DUF based on 31.5 1.6E+02 0.0034 21.9 5.5 40 210-251 16-55 (79)
339 TIGR00045 glycerate kinase. Th 31.3 2E+02 0.0043 28.8 7.6 52 336-390 275-338 (375)
340 PRK13556 azoreductase; Provisi 31.2 77 0.0017 28.6 4.5 42 62-104 1-46 (208)
341 cd01080 NAD_bind_m-THF_DH_Cycl 31.0 2.6E+02 0.0056 24.4 7.6 45 328-373 70-116 (168)
342 PRK07952 DNA replication prote 30.9 2E+02 0.0043 26.9 7.2 75 16-92 50-128 (244)
343 cd03145 GAT1_cyanophycinase Ty 30.8 4.1E+02 0.0089 24.1 9.6 36 336-371 75-124 (217)
344 PRK13230 nitrogenase reductase 30.4 93 0.002 29.4 5.1 37 62-102 1-37 (279)
345 PF03401 TctC: Tripartite tric 30.4 4.7E+02 0.01 24.7 13.1 41 397-439 220-260 (274)
346 PRK06988 putative formyltransf 30.3 74 0.0016 30.9 4.4 18 155-172 68-85 (312)
347 PF02951 GSH-S_N: Prokaryotic 30.2 85 0.0019 25.7 4.1 34 63-100 1-37 (119)
348 KOG1209 1-Acyl dihydroxyaceton 30.2 91 0.002 28.5 4.5 32 62-100 7-38 (289)
349 PRK13235 nifH nitrogenase redu 30.1 88 0.0019 29.5 4.9 37 62-102 1-37 (274)
350 COG1057 NadD Nicotinic acid mo 30.1 53 0.0011 29.6 3.1 29 61-90 1-33 (197)
351 PRK03202 6-phosphofructokinase 30.1 5.3E+02 0.011 25.2 10.7 44 152-199 81-124 (320)
352 PRK10637 cysG siroheme synthas 30.0 6.3E+02 0.014 26.0 12.4 47 326-373 55-106 (457)
353 TIGR03371 cellulose_yhjQ cellu 29.7 97 0.0021 28.4 5.0 37 63-102 2-38 (246)
354 PF01656 CbiA: CobQ/CobB/MinD/ 29.4 1.1E+02 0.0023 26.8 5.1 35 65-102 1-35 (195)
355 cd02040 NifH NifH gene encodes 29.2 1E+02 0.0022 28.8 5.2 37 62-102 1-37 (270)
356 PRK06851 hypothetical protein; 29.2 1.7E+02 0.0037 29.2 6.8 84 12-100 166-250 (367)
357 PF01993 MTD: methylene-5,6,7, 29.1 59 0.0013 30.0 3.2 40 158-197 53-92 (276)
358 PRK01355 azoreductase; Reviewe 29.0 1.5E+02 0.0032 26.6 5.9 42 62-104 1-46 (199)
359 TIGR01281 DPOR_bchL light-inde 28.9 97 0.0021 29.1 5.0 36 63-102 1-36 (268)
360 TIGR03018 pepcterm_TyrKin exop 28.9 1.3E+02 0.0029 26.9 5.7 37 63-102 36-73 (207)
361 PRK03359 putative electron tra 28.8 1.3E+02 0.0028 28.3 5.6 45 152-200 100-148 (256)
362 TIGR03029 EpsG chain length de 28.8 1.1E+02 0.0025 28.7 5.5 38 62-102 103-140 (274)
363 PLN02948 phosphoribosylaminoim 28.8 7.4E+02 0.016 26.4 12.2 121 304-424 411-556 (577)
364 COG0771 MurD UDP-N-acetylmuram 28.8 1.4E+02 0.0031 30.5 6.3 41 327-369 53-98 (448)
365 COG1182 AcpD Acyl carrier prot 28.6 1.2E+02 0.0025 27.4 4.9 42 62-105 1-46 (202)
366 KOG3742 Glycogen synthase [Car 28.5 41 0.00089 34.0 2.3 38 337-374 493-534 (692)
367 PF02585 PIG-L: GlcNAc-PI de-N 28.4 67 0.0014 26.2 3.3 26 151-176 87-112 (128)
368 cd05568 PTS_IIB_bgl_like PTS_I 28.2 1.4E+02 0.0031 22.0 4.9 61 305-373 2-69 (85)
369 PRK00784 cobyric acid synthase 28.2 72 0.0016 33.2 4.2 30 62-91 2-31 (488)
370 PRK10818 cell division inhibit 28.1 1.1E+02 0.0025 28.6 5.3 37 63-102 3-39 (270)
371 PRK12342 hypothetical protein; 28.0 1.4E+02 0.003 28.1 5.7 46 152-201 97-146 (254)
372 COG1618 Predicted nucleotide k 27.5 1.2E+02 0.0026 26.5 4.6 31 60-91 3-33 (179)
373 COG3911 Predicted ATPase [Gene 27.2 86 0.0019 26.9 3.6 27 61-91 7-33 (183)
374 TIGR00521 coaBC_dfp phosphopan 27.2 4.2E+02 0.0092 26.7 9.3 48 360-407 108-177 (390)
375 CHL00072 chlL photochlorophyll 27.2 1E+02 0.0023 29.5 4.8 36 63-102 1-36 (290)
376 PF04577 DUF563: Protein of un 27.2 1.7E+02 0.0036 25.9 6.0 17 338-354 146-162 (206)
377 COG1611 Predicted Rossmann fol 26.7 3.6E+02 0.0079 24.4 7.9 40 330-369 96-140 (205)
378 PF03358 FMN_red: NADPH-depend 26.7 1.8E+02 0.0038 24.4 5.8 38 63-103 1-40 (152)
379 PRK04885 ppnK inorganic polyph 26.6 2.1E+02 0.0046 27.1 6.7 52 343-408 34-92 (265)
380 cd05776 DNA_polB_alpha_exo ina 26.6 1E+02 0.0022 28.5 4.5 39 153-193 86-124 (234)
381 PRK13010 purU formyltetrahydro 26.5 1.3E+02 0.0029 28.9 5.3 20 154-173 159-178 (289)
382 PRK10867 signal recognition pa 26.4 6E+02 0.013 26.0 10.3 29 63-91 100-129 (433)
383 PF00389 2-Hacid_dh: D-isomer 26.4 3.6E+02 0.0078 22.0 11.1 79 309-392 3-87 (133)
384 PRK14494 putative molybdopteri 25.9 1.3E+02 0.0029 27.7 5.1 35 63-100 1-35 (229)
385 PRK04539 ppnK inorganic polyph 25.8 1.5E+02 0.0032 28.6 5.6 55 340-408 64-123 (296)
386 PRK03372 ppnK inorganic polyph 25.8 1.5E+02 0.0033 28.7 5.6 54 341-408 69-127 (306)
387 TIGR00959 ffh signal recogniti 25.7 5.7E+02 0.012 26.1 10.0 29 63-91 99-128 (428)
388 PRK13234 nifH nitrogenase redu 25.5 1.3E+02 0.0028 28.8 5.2 37 62-102 4-40 (295)
389 PRK13849 putative crown gall t 25.2 1.2E+02 0.0026 28.0 4.7 38 62-102 1-38 (231)
390 PRK07206 hypothetical protein; 25.1 2.3E+02 0.005 28.5 7.2 20 155-174 61-80 (416)
391 PRK09739 hypothetical protein; 25.1 1.8E+02 0.0038 26.0 5.7 41 61-104 2-44 (199)
392 TIGR00661 MJ1255 conserved hyp 25.1 5.8E+02 0.013 24.5 9.8 27 345-371 94-120 (321)
393 PF08323 Glyco_transf_5: Starc 25.0 1.3E+02 0.0028 27.9 5.0 28 64-92 1-34 (245)
394 COG0300 DltE Short-chain dehyd 24.8 2.1E+02 0.0045 27.1 6.2 75 267-353 5-93 (265)
395 COG3640 CooC CO dehydrogenase 24.8 1.5E+02 0.0032 27.6 5.0 37 63-102 1-37 (255)
396 PRK00170 azoreductase; Reviewe 24.7 1.5E+02 0.0032 26.3 5.2 42 62-104 1-45 (201)
397 PRK13225 phosphoglycolate phos 24.7 6E+02 0.013 24.0 11.4 50 354-407 222-271 (273)
398 cd03146 GAT1_Peptidase_E Type 24.5 5.2E+02 0.011 23.3 9.1 37 336-372 72-122 (212)
399 COG1648 CysG Siroheme synthase 24.5 5.4E+02 0.012 23.4 12.3 100 303-408 35-148 (210)
400 TIGR00514 accC acetyl-CoA carb 24.4 2.1E+02 0.0045 29.3 6.8 32 61-101 1-32 (449)
401 PF01993 MTD: methylene-5,6,7, 24.2 1.5E+02 0.0032 27.5 4.8 53 353-407 74-127 (276)
402 PRK01911 ppnK inorganic polyph 24.2 1.5E+02 0.0032 28.6 5.2 55 340-408 60-119 (292)
403 PF00532 Peripla_BP_1: Peripla 23.8 6.1E+02 0.013 23.8 11.8 142 158-324 50-203 (279)
404 cd01965 Nitrogenase_MoFe_beta_ 23.8 7.7E+02 0.017 25.0 14.1 155 214-373 60-254 (428)
405 PRK02649 ppnK inorganic polyph 23.8 1.5E+02 0.0033 28.7 5.3 55 340-408 64-123 (305)
406 PLN02554 UDP-glycosyltransfera 23.7 1.3E+02 0.0027 31.4 5.0 37 62-100 2-38 (481)
407 TIGR03282 methan_mark_13 putat 23.6 4.4E+02 0.0095 26.0 8.1 82 357-445 98-189 (352)
408 PRK10499 PTS system N,N'-diace 23.6 1.7E+02 0.0037 23.3 4.7 67 305-372 5-81 (106)
409 PF07355 GRDB: Glycine/sarcosi 23.4 1.4E+02 0.0029 29.4 4.7 50 153-202 69-122 (349)
410 PF03016 Exostosin: Exostosin 23.3 60 0.0013 30.9 2.4 36 337-372 229-269 (302)
411 PRK12815 carB carbamoyl phosph 23.2 1.5E+02 0.0033 34.3 5.9 39 61-102 6-49 (1068)
412 TIGR00064 ftsY signal recognit 23.0 2E+02 0.0044 27.3 5.9 36 63-101 72-107 (272)
413 PF12242 Eno-Rase_NADH_b: NAD( 23.0 70 0.0015 23.9 2.1 25 60-87 37-61 (78)
414 COG1929 Glycerate kinase [Carb 23.0 2.3E+02 0.005 28.0 6.2 52 335-389 275-338 (378)
415 TIGR01969 minD_arch cell divis 22.9 1.6E+02 0.0035 27.0 5.2 36 64-102 2-37 (251)
416 COG2099 CobK Precorrin-6x redu 22.9 6.2E+02 0.013 23.8 8.6 56 318-373 164-231 (257)
417 PF04123 DUF373: Domain of unk 22.7 6.2E+02 0.013 25.0 9.2 25 150-174 84-110 (344)
418 PRK06973 nicotinic acid mononu 22.7 1.2E+02 0.0027 28.2 4.2 28 61-89 20-51 (243)
419 PRK04148 hypothetical protein; 22.7 1.6E+02 0.0035 24.7 4.5 34 62-105 17-50 (134)
420 PRK05282 (alpha)-aspartyl dipe 22.6 6.2E+02 0.013 23.4 10.0 44 329-372 64-121 (233)
421 COG0205 PfkA 6-phosphofructoki 22.6 3.2E+02 0.0069 27.0 7.2 36 61-100 1-38 (347)
422 PF00318 Ribosomal_S2: Ribosom 22.5 1.3E+02 0.0029 27.2 4.4 31 164-198 143-173 (211)
423 PF08357 SEFIR: SEFIR domain; 22.4 1.4E+02 0.0031 25.0 4.3 38 63-103 1-38 (150)
424 KOG0832 Mitochondrial/chloropl 22.3 1.7E+02 0.0036 27.0 4.7 40 155-198 164-203 (251)
425 PRK08462 biotin carboxylase; V 22.2 1.6E+02 0.0035 30.0 5.5 31 61-100 3-33 (445)
426 PRK06217 hypothetical protein; 22.2 86 0.0019 27.5 3.0 25 62-87 1-25 (183)
427 PF07015 VirC1: VirC1 protein; 22.1 1.9E+02 0.0042 26.7 5.3 34 65-101 4-37 (231)
428 PRK09288 purT phosphoribosylgl 22.0 2.2E+02 0.0049 28.3 6.4 34 61-103 11-44 (395)
429 PF05582 Peptidase_U57: YabG p 21.9 83 0.0018 29.9 2.8 22 151-172 141-162 (287)
430 PRK00090 bioD dithiobiotin syn 21.8 1.1E+02 0.0023 27.8 3.7 29 64-92 1-29 (222)
431 cd01141 TroA_d Periplasmic bin 21.8 1.4E+02 0.003 26.1 4.3 36 158-197 63-98 (186)
432 TIGR01968 minD_bact septum sit 21.8 1.5E+02 0.0033 27.3 4.8 36 64-102 3-38 (261)
433 COG2804 PulE Type II secretory 21.7 1.7E+02 0.0036 30.4 5.2 38 62-101 257-294 (500)
434 COG1938 Archaeal enzymes of AT 21.6 6.7E+02 0.014 23.4 14.2 46 327-372 126-177 (244)
435 PF13460 NAD_binding_10: NADH( 21.6 4.7E+02 0.01 22.3 7.7 60 304-370 23-95 (183)
436 PRK13869 plasmid-partitioning 21.6 1.5E+02 0.0033 29.9 5.0 38 62-102 121-158 (405)
437 TIGR01755 flav_wrbA NAD(P)H:qu 21.6 1.8E+02 0.004 25.9 5.1 35 63-101 1-37 (197)
438 cd01078 NAD_bind_H4MPT_DH NADP 21.5 5.6E+02 0.012 22.5 9.2 37 336-372 89-128 (194)
439 PF02571 CbiJ: Precorrin-6x re 21.5 1.5E+02 0.0034 27.7 4.7 46 153-199 55-101 (249)
440 PF13500 AAA_26: AAA domain; P 21.3 1.3E+02 0.0029 26.6 4.2 29 64-92 2-30 (199)
441 KOG0780 Signal recognition par 21.3 3.3E+02 0.0071 27.4 6.8 41 63-104 101-141 (483)
442 TIGR00732 dprA DNA protecting 21.3 2.7E+02 0.0058 25.5 6.1 45 355-400 172-217 (220)
443 TIGR03445 mycothiol_MshB 1D-my 21.3 94 0.002 29.8 3.2 22 152-173 111-132 (284)
444 PRK01372 ddl D-alanine--D-alan 21.3 1.4E+02 0.0029 28.6 4.5 38 60-100 2-42 (304)
445 PF13614 AAA_31: AAA domain; P 21.2 2.1E+02 0.0047 23.8 5.3 35 65-102 3-37 (157)
446 COG0604 Qor NADPH:quinone redu 21.1 4.7E+02 0.01 25.5 8.2 89 261-362 137-229 (326)
447 PRK11670 antiporter inner memb 21.1 1.6E+02 0.0035 29.4 5.0 38 62-102 106-144 (369)
448 PRK05294 carB carbamoyl phosph 21.1 88 0.0019 36.2 3.5 40 61-103 6-50 (1066)
449 PRK14077 pnk inorganic polypho 20.9 1.8E+02 0.0039 27.9 5.1 54 341-408 61-119 (287)
450 COG4394 Uncharacterized protei 20.9 7.6E+02 0.016 23.8 15.2 45 328-373 239-285 (370)
451 PF08298 AAA_PrkA: PrkA AAA do 20.8 1.3E+02 0.0028 29.8 4.0 36 55-90 80-115 (358)
452 cd06308 PBP1_sensor_kinase_lik 20.8 6.5E+02 0.014 23.0 14.2 34 302-335 181-216 (270)
453 COG1087 GalE UDP-glucose 4-epi 20.8 1.4E+02 0.0031 28.8 4.2 21 153-173 56-76 (329)
454 COG1618 Predicted nucleotide k 20.7 2.4E+02 0.0052 24.7 5.2 70 337-407 93-175 (179)
455 TIGR02855 spore_yabG sporulati 20.6 83 0.0018 29.7 2.6 21 152-172 141-161 (283)
456 cd01983 Fer4_NifH The Fer4_Nif 20.6 1.8E+02 0.004 21.4 4.3 31 68-101 4-34 (99)
457 TIGR01286 nifK nitrogenase mol 20.5 1E+03 0.022 25.0 12.0 159 214-375 121-320 (515)
458 PHA02518 ParA-like protein; Pr 20.4 1.9E+02 0.0042 25.6 5.1 36 64-102 2-37 (211)
459 PRK08118 topology modulation p 20.4 1.2E+02 0.0025 26.4 3.4 26 62-88 1-26 (167)
460 cd05781 DNA_polB_B3_exo DEDDy 20.2 1.9E+02 0.0042 25.6 4.8 32 154-185 53-84 (188)
461 smart00763 AAA_PrkA PrkA AAA d 20.1 1.4E+02 0.0031 29.6 4.2 57 33-89 43-104 (361)
462 PF00072 Response_reg: Respons 20.1 1.9E+02 0.0041 22.2 4.4 41 157-199 36-79 (112)
463 PRK11617 endonuclease V; Provi 20.1 85 0.0018 28.9 2.5 35 163-197 96-131 (224)
No 1
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=100.00 E-value=2.3e-49 Score=397.33 Aligned_cols=378 Identities=72% Similarity=1.229 Sum_probs=312.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhHHH
Q 012492 65 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCY 144 (462)
Q Consensus 65 Ili~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~ 144 (462)
|||++.++|+||.++|.+|+++|.+..++.+++.+.|+++...++....+.+.|..+++++.+|+..|+.++.+......
T Consensus 1 ilils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~Y~~~~~~p~~~~~~y~~~~~~~~~~~~ 80 (382)
T PLN02605 1 VLILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVDLWKEHTPWPFNQLPRSYKFLVKHPQLWKMTYHGTNPRLIHQSY 80 (382)
T ss_pred CEEEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEehhhhcCcchhhhHHHHHHHHhhCHHHHHHHHHhcCchhhhHHH
Confidence 68999999999999999999999876444568888999987677655667778998888866899888766543333333
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcC--CCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHH
Q 012492 145 LAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQG--LQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKE 222 (462)
Q Consensus 145 ~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~--~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~ 222 (462)
....+....+++.+++++++||+||++||+.+..++.+++..+ ...++|+++++||+...|..|+++.+|.++++|+.
T Consensus 81 ~~~~~~~~~~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~s~~ 160 (382)
T PLN02605 81 FAATSAFVAREVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCPSEE 160 (382)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEECCHH
Confidence 3333455668899999999999999999987664443333211 12489999999999657899999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCC
Q 012492 223 VAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRP 302 (462)
Q Consensus 223 ~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~ 302 (462)
.++.+.+.|++++++.++|+|+++.|......++.+|+++|++++.++++++||+.|.+...+++.++.+.+.......+
T Consensus 161 ~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~ 240 (382)
T PLN02605 161 VAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKP 240 (382)
T ss_pred HHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCC
Confidence 99999999999999999999999887654346778899999998899999999999988888888776543311000124
Q ss_pred CceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchH
Q 012492 303 IGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVP 382 (462)
Q Consensus 303 ~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~ 382 (462)
+.+++++||++..+++.+++.....+|++.||+++|.++|++||++|+++||+|++|||++|+|+|+++..++|+.+|+.
T Consensus 241 ~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~ 320 (382)
T PLN02605 241 IGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVP 320 (382)
T ss_pred CceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhCCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHH
Confidence 56778889988766666765544567999999999999999999999999999999999999999999988889889999
Q ss_pred HHHHCCceeeeCCHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 383 YVVDNGAGVFTRSPKETARIVTEWFSTK-TDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 383 ~l~~~G~g~~~~~~~~la~~i~~ll~~d-~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
++.+.|.++.+.+++++++++.+++ .| ++.+++|++++++.+.++++++|++.+.+++.+
T Consensus 321 ~i~~~g~g~~~~~~~~la~~i~~ll-~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~~~~ 381 (382)
T PLN02605 321 YVVDNGFGAFSESPKEIARIVAEWF-GDKSDELEAMSENALKLARPEAVFDIVHDLHELVRQ 381 (382)
T ss_pred HHHhCCceeecCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhC
Confidence 9999999998899999999999999 56 999999999999999999999999999988765
No 2
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=100.00 E-value=1e-46 Score=378.93 Aligned_cols=366 Identities=25% Similarity=0.388 Sum_probs=297.0
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhh-HHHHHHhhcCCcc
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHV-QLWKVAFHSTSPK 138 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~-~l~~~~~~~~~~~ 138 (462)
++||||||++.++|+||.++|.+|+++|++++++..++.+.|++....++....+.+.|..++++. .+|+..|+.+. .
T Consensus 3 ~~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~-~ 81 (391)
T PRK13608 3 TQNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRP-D 81 (391)
T ss_pred CCCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCc-h
Confidence 467899999999999999999999999998876556788889987766654444566788888665 46876666543 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEE
Q 012492 139 WIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYC 218 (462)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~ 218 (462)
+....+ ......+++.+++++++||+||+++|.... ..++..+ ..++|++++++|+. .|..|+++.+|.+++
T Consensus 82 ~~~~~~---~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~---~~l~~~~-~~~iP~~~v~td~~-~~~~w~~~~~d~~~v 153 (391)
T PRK13608 82 KLDKCF---YKYYGLNKLINLLIKEKPDLILLTFPTPVM---SVLTEQF-NINIPVATVMTDYR-LHKNWITPYSTRYYV 153 (391)
T ss_pred hhHHHH---HHHHHHHHHHHHHHHhCcCEEEECCcHHHH---HHHHHhc-CCCCCEEEEeCCCC-cccccccCCCCEEEE
Confidence 222221 122334688899999999999999887532 2233222 14899999999985 788999999999999
Q ss_pred cCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCC-ccHHHHHHHHHHhhhcc
Q 012492 219 PSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGM-GPVKETAMALGESLLDK 297 (462)
Q Consensus 219 ~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~-~~~~~~l~~l~~~l~~~ 297 (462)
.++.+++.+.+.|+++++|.++|+|+++.|... .+++..+++++++++++++++++|++|. +++..++.++.+.
T Consensus 154 ~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~~-~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~~~---- 228 (391)
T PRK13608 154 ATKETKQDFIDVGIDPSTVKVTGIPIDNKFETP-IDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDILAK---- 228 (391)
T ss_pred CCHHHHHHHHHcCCCHHHEEEECeecChHhccc-ccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHHhc----
Confidence 999999999989999999999999999877653 3456778889998888889999999985 6666666654321
Q ss_pred cCCCCCceEEEEccCCHHHHHHHhh-ccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCc
Q 012492 298 ETGRPIGQLIIICGRNRTLASTLQS-EEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQ 376 (462)
Q Consensus 298 ~~~~~~~~~lvv~G~~~~l~~~~~~-~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~ 376 (462)
.+++++++++|.+.++.+.+++ .+...+|.+.||+++|.++|+.||++|+++||.|++|||++|+|+|+++..++|
T Consensus 229 ---~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pgq 305 (391)
T PRK13608 229 ---SANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLMITKPGGITISEGLARCIPMIFLNPAPGQ 305 (391)
T ss_pred ---CCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhEEEeCCchHHHHHHHHhCCCEEECCCCCCc
Confidence 2567888889988655444443 344568999999999999999999999999999999999999999999766777
Q ss_pred cccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 377 EKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 377 ~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
+..|+.++.+.|+|+.+.+++++++++.+++ +|++.+++|++++++.+.++++++|++.+.+++++
T Consensus 306 e~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll-~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 306 ELENALYFEEKGFGKIADTPEEAIKIVASLT-NGNEQLTNMISTMEQDKIKYATQTICRDLLDLIGH 371 (391)
T ss_pred chhHHHHHHhCCcEEEeCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh
Confidence 8889999999999999999999999999999 79999999999999999999999999999888854
No 3
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=100.00 E-value=2.9e-42 Score=346.22 Aligned_cols=368 Identities=27% Similarity=0.390 Sum_probs=280.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhh-hHHHHHHhhcCCcch
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKH-VQLWKVAFHSTSPKW 139 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~-~~l~~~~~~~~~~~~ 139 (462)
++|||+|++.++|+||..+|.+|+++|+++|+. ++.++|.++...++-.......|...++. ..+|...|..+....
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~--~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIK--DVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIY 80 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCC--cEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 467999999999999999999999999999863 56677876543332122223345554443 245665554332111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEc
Q 012492 140 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCP 219 (462)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~ 219 (462)
... ..........+++.+++++++||+||++++..+.. . +.+..+ .++|++++++|+. .|..|+++.+|.++++
T Consensus 81 ~~~-~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~-~-~~~~~~--~~ip~~~~~td~~-~~~~~~~~~ad~i~~~ 154 (380)
T PRK13609 81 DKK-IFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVP-E-LKKQTG--ISIPTYNVLTDFC-LHKIWVHREVDRYFVA 154 (380)
T ss_pred chH-HHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHH-H-HHHhcC--CCCCeEEEeCCCC-CCcccccCCCCEEEEC
Confidence 011 11122233457889999999999999998876532 2 222222 4799999999985 6889999999999999
Q ss_pred CHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCC-ccHHHHHHHHHHhhhccc
Q 012492 220 SKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGM-GPVKETAMALGESLLDKE 298 (462)
Q Consensus 220 s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~-~~~~~~l~~l~~~l~~~~ 298 (462)
|+...+.+.+.|++++++.++|+|+++.|... .++..++++++++++++++++++|+.+. +.+.+++..+ .+
T Consensus 155 s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~~-~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l----~~-- 227 (380)
T PRK13609 155 TDHVKKVLVDIGVPPEQVVETGIPIRSSFELK-INPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSL----MS-- 227 (380)
T ss_pred CHHHHHHHHHcCCChhHEEEECcccChHHcCc-CCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHH----hh--
Confidence 99999999999999899999999998766543 3455678899998888888899998885 3454444433 22
Q ss_pred CCCCCceEEEEccCCHHHHHHHhhc--cCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCc
Q 012492 299 TGRPIGQLIIICGRNRTLASTLQSE--EWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQ 376 (462)
Q Consensus 299 ~~~~~~~~lvv~G~~~~l~~~~~~~--~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~ 376 (462)
.+++++++++|.+..+++.++++ ....+|++.||++++.++|+.||++|+++||.|++|||++|+|+|+++..+++
T Consensus 228 --~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~ 305 (380)
T PRK13609 228 --VPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMITKPGGITLSEAAALGVPVILYKPVPGQ 305 (380)
T ss_pred --CCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEeCCCchHHHHHHHhCCCEEECCCCCCc
Confidence 25678888888765444444332 22368999999999999999999999999999999999999999998765666
Q ss_pred cccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhccCC
Q 012492 377 EKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQRGP 446 (462)
Q Consensus 377 ~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~~~ 446 (462)
+..|+.++.+.|.++...+++++++++.+++ +|++.+++|++++++++.+++++++++.+++++...-+
T Consensus 306 ~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll-~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~~~~ 374 (380)
T PRK13609 306 EKENAMYFERKGAAVVIRDDEEVFAKTEALL-QDDMKLLQMKEAMKSLYLPEPADHIVDDILAENHVEPN 374 (380)
T ss_pred chHHHHHHHhCCcEEEECCHHHHHHHHHHHH-CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhhhhhh
Confidence 6678889999999998899999999999999 79999999999999999999999999999998876544
No 4
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.1e-37 Score=299.54 Aligned_cols=338 Identities=22% Similarity=0.297 Sum_probs=251.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecccccc-------CCCchhhHHHHHHHHhhhHHHHHHhhcC
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYA-------GWPLNDMERSYKFMVKHVQLWKVAFHST 135 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~-------~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 135 (462)
|+|++..+++| ||..+|++|+++|.++|.. ++.+........ +..+..++.. + +.+.
T Consensus 1 ~~ivl~~gGTG-GHv~pAlAl~~~l~~~g~~--~v~~~~~~~~~e~~l~~~~~~~~~~I~~~--------~-----~~~~ 64 (357)
T COG0707 1 KKIVLTAGGTG-GHVFPALALAEELAKRGWE--QVIVLGTGDGLEAFLVKQYGIEFELIPSG--------G-----LRRK 64 (357)
T ss_pred CeEEEEeCCCc-cchhHHHHHHHHHHhhCcc--EEEEecccccceeeeccccCceEEEEecc--------c-----cccc
Confidence 57888889996 9999999999999999853 334332111000 1111111100 0 0000
Q ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-CCcccccCCC
Q 012492 136 -SPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-CHPTWFHPRV 213 (462)
Q Consensus 136 -~~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~~~~~~~~~ 213 (462)
....+... +.-+....+.++++++++||+|++++++.+.++..+++. .++|++.+.+|... ...+|+.+.+
T Consensus 65 ~~~~~~~~~---~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~----~~iPv~ihEqn~~~G~ank~~~~~a 137 (357)
T COG0707 65 GSLKLLKAP---FKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKL----LGIPVIIHEQNAVPGLANKILSKFA 137 (357)
T ss_pred CcHHHHHHH---HHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHh----CCCCEEEEecCCCcchhHHHhHHhh
Confidence 00111111 222344556678899999999999999999876666654 58999887777642 2235667788
Q ss_pred cEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHh
Q 012492 214 NRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGES 293 (462)
Q Consensus 214 d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~ 293 (462)
+.+.+..+. ...+.+++++.++|+|+++++.. . .....+.... .++++||++|||+|.+.+++++.++...
T Consensus 138 ~~V~~~f~~-----~~~~~~~~~~~~tG~Pvr~~~~~-~-~~~~~~~~~~--~~~~~ilV~GGS~Ga~~ln~~v~~~~~~ 208 (357)
T COG0707 138 KKVASAFPK-----LEAGVKPENVVVTGIPVRPEFEE-L-PAAEVRKDGR--LDKKTILVTGGSQGAKALNDLVPEALAK 208 (357)
T ss_pred ceeeecccc-----ccccCCCCceEEecCcccHHhhc-c-chhhhhhhcc--CCCcEEEEECCcchhHHHHHHHHHHHHH
Confidence 888876665 23466778899999999998875 1 1222222222 2678999999999999999999988777
Q ss_pred hhcccCCCCCceEEEEccCCH--HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEec
Q 012492 294 LLDKETGRPIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILND 371 (462)
Q Consensus 294 l~~~~~~~~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~ 371 (462)
+.+ ++++++.+|.+. ++.+.+.+++. +++.+|.+||.++|++||++||++|++|+.|++++|+|+|..|
T Consensus 209 l~~------~~~v~~~~G~~~~~~~~~~~~~~~~---~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP 279 (357)
T COG0707 209 LAN------RIQVIHQTGKNDLEELKSAYNELGV---VRVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVP 279 (357)
T ss_pred hhh------CeEEEEEcCcchHHHHHHHHhhcCc---EEEeeHHhhHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeC
Confidence 653 478999999996 23333443332 8999999999999999999999999999999999999999999
Q ss_pred CCCC---ccccchHHHHHCCceeeeCC----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 012492 372 YIPG---QEKGNVPYVVDNGAGVFTRS----PKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 372 ~~~~---~~~~n~~~l~~~G~g~~~~~----~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~ 442 (462)
++++ +|..|+.++++.|++.++.+ ++.+.+.|.+++ ++|+.+++|++++++...+++.+++++.++.+..
T Consensus 280 ~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~-~~~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~~~ 356 (357)
T COG0707 280 YPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLL-SNPEKLKAMAENAKKLGKPDAAERIADLLLALAK 356 (357)
T ss_pred CCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 9854 88899999999999999876 458999999999 7899999999999999999999999999988764
No 5
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=100.00 E-value=2.3e-34 Score=284.02 Aligned_cols=336 Identities=18% Similarity=0.206 Sum_probs=237.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHH-HHHHHHhhhHHHHHHhhcC-Ccch
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMER-SYKFMVKHVQLWKVAFHST-SPKW 139 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~-~y~~~~~~~~l~~~~~~~~-~~~~ 139 (462)
|+||+|.+++|| ||..+|++||++|+++|+ ++.++... .+.....++. .|.. ..+...++.+. ..+.
T Consensus 1 ~~~i~~~~GGTG-GHi~Pala~a~~l~~~g~---~v~~vg~~---~~~e~~l~~~~g~~~----~~~~~~~l~~~~~~~~ 69 (352)
T PRK12446 1 MKKIVFTGGGSA-GHVTPNLAIIPYLKEDNW---DISYIGSH---QGIEKTIIEKENIPY----YSISSGKLRRYFDLKN 69 (352)
T ss_pred CCeEEEEcCCcH-HHHHHHHHHHHHHHhCCC---EEEEEECC---CccccccCcccCCcE----EEEeccCcCCCchHHH
Confidence 678999999996 999999999999998764 44433211 1111111100 0100 00000001110 0011
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc----ccccCCCcE
Q 012492 140 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP----TWFHPRVNR 215 (462)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~----~~~~~~~d~ 215 (462)
+...+ .......+..+++++++||+||+++++.+.+++.+++. .++|++. |+.+ .++ +.+.+.+++
T Consensus 70 ~~~~~---~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~----~~~p~~i--~e~n-~~~g~~nr~~~~~a~~ 139 (352)
T PRK12446 70 IKDPF---LVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWL----NRVPVLL--HESD-MTPGLANKIALRFASK 139 (352)
T ss_pred HHHHH---HHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHH----cCCCEEE--ECCC-CCccHHHHHHHHhhCE
Confidence 11111 11233445667899999999999999988776666665 4899855 4433 222 345677888
Q ss_pred EEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhh
Q 012492 216 CYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLL 295 (462)
Q Consensus 216 ~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~ 295 (462)
+++..++.. .+++++++.++|+|+++.+... .++..++.++++++++++|++||++|.+.+++++..++..+.
T Consensus 140 v~~~f~~~~-----~~~~~~k~~~tG~Pvr~~~~~~--~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~ 212 (352)
T PRK12446 140 IFVTFEEAA-----KHLPKEKVIYTGSPVREEVLKG--NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL 212 (352)
T ss_pred EEEEccchh-----hhCCCCCeEEECCcCCcccccc--cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc
Confidence 887765543 2456678999999999988643 355667788998889999999999999999888887766553
Q ss_pred cccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccc-hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC-
Q 012492 296 DKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE-TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI- 373 (462)
Q Consensus 296 ~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~-~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~- 373 (462)
+ +++++++||.+. +.+..... .++...+|. ++|.++|++||++|+++|++|+.|++++|+|+|+.|.+
T Consensus 213 ~------~~~vv~~~G~~~-~~~~~~~~---~~~~~~~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~ 282 (352)
T PRK12446 213 L------KYQIVHLCGKGN-LDDSLQNK---EGYRQFEYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSK 282 (352)
T ss_pred c------CcEEEEEeCCch-HHHHHhhc---CCcEEecchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCC
Confidence 2 478899999875 33333222 245667888 78999999999999999999999999999999999875
Q ss_pred ---CCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 012492 374 ---PGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 374 ---~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~ 439 (462)
.++|..|++++.+.|++..+. +++.+.+++.+++ +|++.++ ++++++..++++++|++.+++
T Consensus 283 ~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll-~~~~~~~---~~~~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 283 FASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELS-HNNEKYK---TALKKYNGKEAIQTIIDHISE 351 (352)
T ss_pred CCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHH-cCHHHHH---HHHHHcCCCCHHHHHHHHHHh
Confidence 267888999999999998765 3778999999998 6876653 566778888999999988764
No 6
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=100.00 E-value=1.7e-31 Score=266.02 Aligned_cols=345 Identities=19% Similarity=0.205 Sum_probs=237.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcch-h
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW-I 140 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~-~ 140 (462)
||||+|++++.| ||...+.+|+++|+++|+ ++.++..... ......+. . ..+............. .
T Consensus 1 ~~~i~i~~~g~g-G~~~~~~~la~~L~~~g~---ev~vv~~~~~---~~~~~~~~-~-----g~~~~~~~~~~~~~~~~~ 67 (357)
T PRK00726 1 MKKILLAGGGTG-GHVFPALALAEELKKRGW---EVLYLGTARG---MEARLVPK-A-----GIEFHFIPSGGLRRKGSL 67 (357)
T ss_pred CcEEEEEcCcch-HhhhHHHHHHHHHHhCCC---EEEEEECCCc---hhhhcccc-C-----CCcEEEEeccCcCCCChH
Confidence 689999999996 999999999999999975 4444421110 00000000 0 0000000000000000 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-CCcccccCCCcEEEEc
Q 012492 141 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-CHPTWFHPRVNRCYCP 219 (462)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~~~~~~~~~d~~i~~ 219 (462)
..+...........++.+++++++||+||+++...+.....+++. .++|+|.+.++... ...+|.++.+|.+++.
T Consensus 68 ~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~----~~~p~v~~~~~~~~~~~~r~~~~~~d~ii~~ 143 (357)
T PRK00726 68 ANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARL----LGIPLVIHEQNAVPGLANKLLARFAKKVATA 143 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHH----cCCCEEEEcCCCCccHHHHHHHHHhchheEC
Confidence 111111112344567778899999999999986654443333333 47899866554321 1234667788999988
Q ss_pred CHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccC
Q 012492 220 SKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKET 299 (462)
Q Consensus 220 s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~ 299 (462)
++... .+ .+..++.++|||++.+++... ..+.+++++++.++++++||+.+.+...+++..+++.+.+
T Consensus 144 ~~~~~---~~--~~~~~i~vi~n~v~~~~~~~~----~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~--- 211 (357)
T PRK00726 144 FPGAF---PE--FFKPKAVVTGNPVREEILALA----APPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPE--- 211 (357)
T ss_pred chhhh---hc--cCCCCEEEECCCCChHhhccc----chhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhh---
Confidence 87542 12 567899999999988765431 1234567766777788888887776666666444455532
Q ss_pred CCCCceEEEEccCCH--HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC---C
Q 012492 300 GRPIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI---P 374 (462)
Q Consensus 300 ~~~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~---~ 374 (462)
.+ .+++++|.+. ++.+.++ +++ +|.+.||++++.++|+.||++|+++|+++++|||++|+|+|+++.+ .
T Consensus 212 -~~--~~~~~~G~g~~~~~~~~~~-~~~--~v~~~g~~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~ 285 (357)
T PRK00726 212 -AL--QVIHQTGKGDLEEVRAAYA-AGI--NAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAAD 285 (357)
T ss_pred -Cc--EEEEEcCCCcHHHHHHHhh-cCC--cEEEeehHhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCc
Confidence 22 4566778775 2333343 443 3999999999999999999999999999999999999999999874 3
Q ss_pred CccccchHHHHHCCceeeeC--C--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 012492 375 GQEKGNVPYVVDNGAGVFTR--S--PKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 375 ~~~~~n~~~l~~~G~g~~~~--~--~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~ 442 (462)
+++..|++.+.+.|.|++++ + +++++++|.+++ +|++.+++|++++++++++++.+++++.|++++.
T Consensus 286 ~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 286 DHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELL-SDPERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred CcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHH-cCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 45666888999999998875 4 899999999999 7999999999999999999999999999998865
No 7
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=1.9e-31 Score=264.73 Aligned_cols=338 Identities=21% Similarity=0.261 Sum_probs=235.0
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcC-CcchhhH
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHST-SPKWIHS 142 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~-~~~~~~~ 142 (462)
||+|.++++| ||...+..|+++|.++|| +|.++.... +......+. . -+ +.....+... ....+..
T Consensus 1 ~~~~~~~~~g-G~~~~~~~la~~l~~~G~---ev~v~~~~~---~~~~~~~~~--~-~~---~~~~~~~~~~~~~~~~~~ 67 (350)
T cd03785 1 RILIAGGGTG-GHIFPALALAEELRERGA---EVLFLGTKR---GLEARLVPK--A-GI---PLHTIPVGGLRRKGSLKK 67 (350)
T ss_pred CEEEEecCch-hhhhHHHHHHHHHHhCCC---EEEEEECCC---cchhhcccc--c-CC---ceEEEEecCcCCCChHHH
Confidence 6899999996 999999999999999986 444432110 000000000 0 00 0000000000 0001111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-CCcccccCCCcEEEEcCH
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-CHPTWFHPRVNRCYCPSK 221 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~~~~~~~~~d~~i~~s~ 221 (462)
+...+.......++.+++++++||+||++++..+.....+++. .++|++.+.++... ....++.+.+|.++++++
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~----~~~p~v~~~~~~~~~~~~~~~~~~~~~vi~~s~ 143 (350)
T cd03785 68 LKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKL----LGIPLVIHEQNAVPGLANRLLARFADRVALSFP 143 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHH----hCCCEEEEcCCCCccHHHHHHHHhhCEEEEcch
Confidence 1111111334556778899999999999887654433334443 47898765444221 112345566899999998
Q ss_pred HHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCC
Q 012492 222 EVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGR 301 (462)
Q Consensus 222 ~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~ 301 (462)
...+. +++.++.++||+++..++.. ... +++++++++.+++++++|+.+.++..+++..+++.+.+
T Consensus 144 ~~~~~-----~~~~~~~~i~n~v~~~~~~~---~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~----- 209 (350)
T cd03785 144 ETAKY-----FPKDKAVVTGNPVREEILAL---DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR----- 209 (350)
T ss_pred hhhhc-----CCCCcEEEECCCCchHHhhh---hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc-----
Confidence 87654 46678999999998776543 112 67788888888888888888776666666555566642
Q ss_pred CCceEEEEccCCH--HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC---CCc
Q 012492 302 PIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI---PGQ 376 (462)
Q Consensus 302 ~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~---~~~ 376 (462)
+++++++++|.+. ++.+.++++ ..+|++.|+++++.++|+.||++|+++|++|++|||++|+|+|+++.+ .++
T Consensus 210 ~~~~~~~i~G~g~~~~l~~~~~~~--~~~v~~~g~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~ 287 (350)
T cd03785 210 KRLQVIHQTGKGDLEEVKKAYEEL--GVNYEVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDH 287 (350)
T ss_pred cCeEEEEEcCCccHHHHHHHHhcc--CCCeEEeehhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCc
Confidence 3456666778873 244444443 468999999999999999999999999999999999999999999864 355
Q ss_pred cccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHH
Q 012492 377 EKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVK 435 (462)
Q Consensus 377 ~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~ 435 (462)
|..|++.+.+.|.|+.++ +++++++++.+++ +|++.+++|++++++++++++.++|++
T Consensus 288 ~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 288 QTANARALVKAGAAVLIPQEELTPERLAAALLELL-SDPERLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred HHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 666889999999998876 7899999999999 799999999999999999999999986
No 8
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.97 E-value=8.7e-30 Score=252.61 Aligned_cols=338 Identities=19% Similarity=0.214 Sum_probs=224.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcC-Ccchhh
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHST-SPKWIH 141 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~-~~~~~~ 141 (462)
|||+|.++++| ||...+..|+++|.++|| ++.+... +. +......+. +. + +......... ......
T Consensus 1 ~~i~~~~g~~~-g~~~~~~~La~~L~~~g~---eV~vv~~-~~--~~~~~~~~~-~g--~---~~~~i~~~~~~~~~~~~ 67 (348)
T TIGR01133 1 KKVVLAAGGTG-GHIFPALAVAEELIKRGV---EVLWLGT-KR--GLEKRLVPK-AG--I---EFYFIPVGGLRRKGSFR 67 (348)
T ss_pred CeEEEEeCccH-HHHhHHHHHHHHHHhCCC---EEEEEeC-CC--cchhccccc-CC--C---ceEEEeccCcCCCChHH
Confidence 59999999995 999988899999999985 4444321 10 000000000 00 0 0000000000 000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-CCcccccCCCcEEEEcC
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-CHPTWFHPRVNRCYCPS 220 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~~~~~~~~~d~~i~~s 220 (462)
.+...........++.+++++++||+||++++..+.....+++. .++|+|.+.++... ....|+++.+|.+++.+
T Consensus 68 ~l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~----~~~p~v~~~~~~~~~~~~~~~~~~~d~ii~~~ 143 (348)
T TIGR01133 68 LIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKL----LGIPLFHHEQNAVPGLTNKLLSRFAKKVLISF 143 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhCeeEECc
Confidence 11111111334567788999999999999987654433333443 37888744333211 12356778899999999
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCC
Q 012492 221 KEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETG 300 (462)
Q Consensus 221 ~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~ 300 (462)
+.+.+.+ +..++|||++..+..... .+++++++++.++++++||+.+.+...+.+..+++.+.+
T Consensus 144 ~~~~~~~--------~~~~i~n~v~~~~~~~~~----~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~---- 207 (348)
T TIGR01133 144 PGAKDHF--------EAVLVGNPVRQEIRSLPV----PRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAE---- 207 (348)
T ss_pred hhHhhcC--------CceEEcCCcCHHHhcccc----hhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh----
Confidence 8876443 247899999876654311 134578877778888888888866655555445455543
Q ss_pred CCCceEEEEccCCH--HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCC--Cc
Q 012492 301 RPIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIP--GQ 376 (462)
Q Consensus 301 ~~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~--~~ 376 (462)
+++++++++|++. ++.+.++++++...+.+. +. ++.++|+.||++|+++|+++++|||++|+|+|+++.++ ++
T Consensus 208 -~~~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~-~~-~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~ 284 (348)
T TIGR01133 208 -KGIQIVHQTGKNDLEKVKNVYQELGIEAIVTFI-DE-NMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAADD 284 (348)
T ss_pred -cCcEEEEECCcchHHHHHHHHhhCCceEEecCc-cc-CHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccc
Confidence 2456666777764 244445555443334444 32 89999999999999999999999999999999998753 44
Q ss_pred cccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 012492 377 EKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDI 437 (462)
Q Consensus 377 ~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i 437 (462)
+..|++.+.+.+.|++++ +++++++++.+++ +|++.+++|++++++++.+++.++|++.|
T Consensus 285 ~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (348)
T TIGR01133 285 QYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLL-LDPANLEAMAEAARKLAKPDAAKRIAELI 348 (348)
T ss_pred hhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHH-cCHHHHHHHHHHHHhcCCccHHHHHHhhC
Confidence 566888888888898874 3899999999999 79999999999999999999999998754
No 9
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=3.2e-27 Score=235.88 Aligned_cols=350 Identities=12% Similarity=0.093 Sum_probs=234.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
|||++++.+..||....+..++++|.+.||+ |.+.... .+..... . ... . .......... ....
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~---v~v~~~~---~~~~~~~--~-~~~-~---~~~~~~~~~~--~~~~- 64 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHE---VHFITSS---RPFRLDE--Y-SPN-I---FFHEVEVPQY--PLFQ- 64 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCc---eEEEecC---CCcchhh--h-ccC-e---EEEEeccccc--chhh-
Confidence 6999998665569999999999999999863 3333211 1110000 0 000 0 0000000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC----c------ccccCC
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH----P------TWFHPR 212 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~----~------~~~~~~ 212 (462)
.........+.+.+.+++.+||+||++++........+++......++|+|...|+..... + .+..+.
T Consensus 65 --~~~~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~ 142 (371)
T cd04962 65 --YPPYDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEK 142 (371)
T ss_pred --cchhHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhh
Confidence 0001223446777889999999999987654333333333221113789988777542110 0 123456
Q ss_pred CcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHH
Q 012492 213 VNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGE 292 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~ 292 (462)
+|.+++.|+...+.+.+.+...+++.+++|+++...+.+ ......+++++++++.++++.+|+....++...++.++ +
T Consensus 143 ~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~-~ 220 (371)
T cd04962 143 SDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRP-KPDEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIF-A 220 (371)
T ss_pred CCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCC-CchHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHH-H
Confidence 899999999999888776545678999999998765443 23445667788877777666666665666777766655 4
Q ss_pred hhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHhCC
Q 012492 293 SLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIRGL 365 (462)
Q Consensus 293 ~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~ 365 (462)
.+.+ .+++++++ +|.+. .+.+..++++..++|.+.|+.+++.++|+.||++|.+|. |++++|||++|+
T Consensus 221 ~l~~----~~~~~l~i-~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~ 295 (371)
T cd04962 221 KVRK----EVPARLLL-VGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGV 295 (371)
T ss_pred HHHh----cCCceEEE-EcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCC
Confidence 4543 23466554 45443 355566667778899999999999999999999998873 899999999999
Q ss_pred CEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcHHHHHHHHHHHHHh
Q 012492 366 PIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKL-AQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 366 PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~-~~~~~~~~ia~~i~~l~~ 442 (462)
|+|+++.++. .+.+.+...|++++ +.+++++++.+++ +|++.+++|++++++. .+.++++.+++.+.++.+
T Consensus 296 PvI~s~~~~~-----~e~i~~~~~G~~~~~~~~~~l~~~i~~l~-~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 296 PVVASNAGGI-----PEVVKHGETGFLVDVGDVEAMAEYALSLL-EDDELWQEFSRAARNRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred CEEEeCCCCc-----hhhhcCCCceEEcCCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999987532 22344445677765 7899999999999 7999999999999988 578999999999999876
Q ss_pred c
Q 012492 443 Q 443 (462)
Q Consensus 443 ~ 443 (462)
+
T Consensus 370 ~ 370 (371)
T cd04962 370 R 370 (371)
T ss_pred h
Confidence 3
No 10
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.96 E-value=5e-27 Score=235.80 Aligned_cols=348 Identities=13% Similarity=0.125 Sum_probs=214.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEE-EeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchh
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFV-KDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 140 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v-~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 140 (462)
||||+|.++++| ||..+|. ++++|++.+++. +++. +...-+... ++..|+. ........ ...+
T Consensus 1 ~~ki~i~~Ggt~-G~i~~a~-l~~~L~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~-------~~l~~~g~-~~~~ 64 (380)
T PRK00025 1 PLRIAIVAGEVS-GDLLGAG-LIRALKARAPNL-EFVGVGGPRMQAAG-----CESLFDM-------EELAVMGL-VEVL 64 (380)
T ss_pred CceEEEEecCcC-HHHHHHH-HHHHHHhcCCCc-EEEEEccHHHHhCC-----CccccCH-------HHhhhccH-HHHH
Confidence 579999999996 9999999 999999877643 3332 211000000 1111110 00000000 0011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcc-cchHHHHHHHHcCCCCCCeEEEEecCCCC-CCc---ccccCCCcE
Q 012492 141 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPL-MQHIPLWVLKWQGLQKKVIFVTVITDLNT-CHP---TWFHPRVNR 215 (462)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~-~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~~---~~~~~~~d~ 215 (462)
... ........++.+++++++||+||+++.. .+......++. .++|++.+.+.... ..+ ..+.+.+|.
T Consensus 65 ~~~---~~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~----~~ip~i~~~~~~~~~~~~~~~~~~~~~~d~ 137 (380)
T PRK00025 65 PRL---PRLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRK----AGIPTIHYVSPSVWAWRQGRAFKIAKATDH 137 (380)
T ss_pred HHH---HHHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHH----CCCCEEEEeCCchhhcCchHHHHHHHHHhh
Confidence 111 1122345677888999999999987632 11111122333 38998876553210 001 112345789
Q ss_pred EEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCc--cHHHHHHHHHHh
Q 012492 216 CYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMG--PVKETAMALGES 293 (462)
Q Consensus 216 ~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~--~~~~~l~~l~~~ 293 (462)
+++.++...+.+.+.|++ +.++|||+....... .++...+++++++++.+++++++|+.+.. ...+.+.++++.
T Consensus 138 i~~~~~~~~~~~~~~g~~---~~~~G~p~~~~~~~~-~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~ 213 (380)
T PRK00025 138 VLALFPFEAAFYDKLGVP---VTFVGHPLADAIPLL-PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQL 213 (380)
T ss_pred heeCCccCHHHHHhcCCC---eEEECcCHHHhcccc-cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 999999888888776753 889999987654321 24567788899988888778888877643 333333344445
Q ss_pred hhcccCCCCCceEEEEccCCH---HHHHHHhhc-cCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEE
Q 012492 294 LLDKETGRPIGQLIIICGRNR---TLASTLQSE-EWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIIL 369 (462)
Q Consensus 294 l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~-~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~ 369 (462)
+.+ +.|++++++++|.+. ++.+.++++ ++ ++.+.. +++..+|+.||++|++||.++ +|||++|+|+|+
T Consensus 214 l~~---~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~--~v~~~~--~~~~~~~~~aDl~v~~sG~~~-lEa~a~G~PvI~ 285 (380)
T PRK00025 214 LQQ---RYPDLRFVLPLVNPKRREQIEEALAEYAGL--EVTLLD--GQKREAMAAADAALAASGTVT-LELALLKVPMVV 285 (380)
T ss_pred HHH---hCCCeEEEEecCChhhHHHHHHHHhhcCCC--CeEEEc--ccHHHHHHhCCEEEECccHHH-HHHHHhCCCEEE
Confidence 543 246777777666332 233444433 22 355543 589999999999999988665 599999999999
Q ss_pred ecCCCCc-------cccc-----hHHHHHCCc--eeee--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCcHH
Q 012492 370 NDYIPGQ-------EKGN-----VPYVVDNGA--GVFT--RSPKETARIVTEWFSTKTDELKRMSENALKLA---QPEAV 430 (462)
Q Consensus 370 ~~~~~~~-------~~~n-----~~~l~~~G~--g~~~--~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~---~~~~~ 430 (462)
.+..+.. +..| +..+.+.+. ++.. .+++.+++.+.+++ +|++.+++|++++++.. .+.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~~~~~a~ 364 (380)
T PRK00025 286 GYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLL-ADGARRQALLEGFTELHQQLRCGAD 364 (380)
T ss_pred EEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhCCCHH
Confidence 8643221 1111 222222222 1222 36889999999999 79999999999863222 66799
Q ss_pred HHHHHHHHHHHhccC
Q 012492 431 VDIVKDIHDLAAQRG 445 (462)
Q Consensus 431 ~~ia~~i~~l~~~~~ 445 (462)
+++++.+.+++.+..
T Consensus 365 ~~~~~~i~~~~~~~~ 379 (380)
T PRK00025 365 ERAAQAVLELLKQRK 379 (380)
T ss_pred HHHHHHHHHHhhhcC
Confidence 999999999887653
No 11
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.96 E-value=1.3e-26 Score=238.54 Aligned_cols=339 Identities=13% Similarity=0.162 Sum_probs=221.2
Q ss_pred CCCCeEEEEecC-----CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhc
Q 012492 60 ERTKNVLILMSD-----TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHS 134 (462)
Q Consensus 60 ~~~~kIli~~~~-----~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ 134 (462)
.++|||++++.. .| |-......|+++|.++|| +|.+....+. .+.....+.. + . ...+...+..
T Consensus 56 ~~~mrI~~~~~~~~~~~~g-G~~~~~~~l~~~L~~~G~---eV~vlt~~~~-~~~~~~g~~v-~----~-~~~~~~~~~~ 124 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVS-GYKNRFQNFIRYLREMGD---EVLVVTTDEG-VPQEFHGAKV-I----G-SWSFPCPFYQ 124 (465)
T ss_pred CCCceEEEEECCcCCcccc-cHHHHHHHHHHHHHHCCC---eEEEEecCCC-CCccccCcee-e----c-cCCcCCccCC
Confidence 567999988632 44 667788999999999986 4444422111 0000000000 0 0 0000000000
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchH-HHHHHHHcCCCCCCeEEEEecCCCCC-C-------
Q 012492 135 TSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHI-PLWVLKWQGLQKKVIFVTVITDLNTC-H------- 205 (462)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~-~~~~~~~~~~~~~iP~v~~~~d~~~~-~------- 205 (462)
... .......++.+.+++.+||+||++++..... .+.+++. .++|+|...|+.... .
T Consensus 125 -------~~~---~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~----~~ip~V~~~h~~~~~~~~~~~~~~ 190 (465)
T PLN02871 125 -------KVP---LSLALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKL----LCVPLVMSYHTHVPVYIPRYTFSW 190 (465)
T ss_pred -------Cce---eeccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHH----hCCCEEEEEecCchhhhhcccchh
Confidence 000 0111223566789999999999987643332 2233443 479998766653210 0
Q ss_pred --------cccccCCCcEEEEcCHHHHHHHHHcCC-CCCcEEEcCCCCChhhhcccCChHHHHHHcCC-CCCCcEEEEEe
Q 012492 206 --------PTWFHPRVNRCYCPSKEVAKRASYFGL-EVSQIRVFGLPIRPSFVRAVISKDNLRLELQM-DPILPAVLLMG 275 (462)
Q Consensus 206 --------~~~~~~~~d~~i~~s~~~~~~l~~~gi-~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l-~~~~~~iLv~g 275 (462)
..++.+.+|.++++|+...+.+.+.+. +.+++.+++|+++.+.+.+.......+.++.. +++.++ +++.
T Consensus 191 ~~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~-i~~v 269 (465)
T PLN02871 191 LVKPMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPL-IVYV 269 (465)
T ss_pred hHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeE-EEEe
Confidence 022345789999999999999887764 46789999999997765543334455665533 334554 4555
Q ss_pred CCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC
Q 012492 276 GGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG 353 (462)
Q Consensus 276 G~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg 353 (462)
|+++..+..+.+..+++.+ ++++++ ++|++. ..+.++++-...+|.|.|++ +++.++|+.||++|++|.
T Consensus 270 Grl~~~K~~~~li~a~~~~-------~~~~l~-ivG~G~-~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~ 340 (465)
T PLN02871 270 GRLGAEKNLDFLKRVMERL-------PGARLA-FVGDGP-YREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSE 340 (465)
T ss_pred CCCchhhhHHHHHHHHHhC-------CCcEEE-EEeCCh-HHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCc
Confidence 6777655555554444443 467655 556664 23444443223589999998 789999999999999874
Q ss_pred ----hhhHHHHHHhCCCEEEecCCCCccccchHHHHH---CCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 012492 354 ----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD---NGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKL 424 (462)
Q Consensus 354 ----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~---~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~ 424 (462)
|.+++|||++|+|+|+++..+. .+.+.+ .+.|++++ |+++++++|.+++ +|++.+++|++++++.
T Consensus 341 ~E~~g~~vlEAmA~G~PVI~s~~gg~-----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll-~~~~~~~~~~~~a~~~ 414 (465)
T PLN02871 341 SETLGFVVLEAMASGVPVVAARAGGI-----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLL-ADPELRERMGAAAREE 414 (465)
T ss_pred ccccCcHHHHHHHcCCCEEEcCCCCc-----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHH
Confidence 8889999999999999986432 223333 45677764 7999999999999 7999999999999999
Q ss_pred cCCcHHHHHHHHHHH
Q 012492 425 AQPEAVVDIVKDIHD 439 (462)
Q Consensus 425 ~~~~~~~~ia~~i~~ 439 (462)
++.++|+.+++.+++
T Consensus 415 ~~~fsw~~~a~~l~~ 429 (465)
T PLN02871 415 VEKWDWRAATRKLRN 429 (465)
T ss_pred HHhCCHHHHHHHHHH
Confidence 989999999999986
No 12
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.95 E-value=8.7e-26 Score=226.04 Aligned_cols=343 Identities=12% Similarity=0.071 Sum_probs=214.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
.||+|.+++|| ||..++ +|+++|++++++. + +++...+.+.. ..++..|+.. .+.-.++. ..+..
T Consensus 6 ~ki~i~aGgts-Ghi~pa-al~~~l~~~~~~~-~-~~g~gg~~m~~---~g~~~~~~~~----~l~v~G~~----~~l~~ 70 (385)
T TIGR00215 6 PTIALVAGEAS-GDILGA-GLRQQLKEHYPNA-R-FIGVAGPRMAA---EGCEVLYSME----ELSVMGLR----EVLGR 70 (385)
T ss_pred CeEEEEeCCcc-HHHHHH-HHHHHHHhcCCCc-E-EEEEccHHHHh---CcCccccChH----HhhhccHH----HHHHH
Confidence 48999999995 999999 9999999987642 2 32311100000 0001111110 00001111 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHH--HHHHcCCCCCCeEEEEecC-CCCCCc----ccccCCCcE
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLW--VLKWQGLQKKVIFVTVITD-LNTCHP----TWFHPRVNR 215 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~--~~~~~~~~~~iP~v~~~~d-~~~~~~----~~~~~~~d~ 215 (462)
.+. -....+++.+.+++++||+||+++. ....... +++. .++|++.++.- .+ ... +.+.+.+|+
T Consensus 71 ~~~---~~~~~~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~----~gip~v~~i~P~~w-aw~~~~~r~l~~~~d~ 141 (385)
T TIGR00215 71 LGR---LLKIRKEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKD----PGIKIIYYISPQVW-AWRKWRAKKIEKATDF 141 (385)
T ss_pred HHH---HHHHHHHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhh----CCCCEEEEeCCcHh-hcCcchHHHHHHHHhH
Confidence 111 1233457778899999999999985 3332222 3332 48999865431 11 111 234457899
Q ss_pred EEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCc--cHHHHHHHHHHh
Q 012492 216 CYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMG--PVKETAMALGES 293 (462)
Q Consensus 216 ~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~--~~~~~l~~l~~~ 293 (462)
+++.++...+.+.+.|+ +..++|||+++.+.....++...|++++++++.+++++++||.+.+ +....+.++++.
T Consensus 142 v~~~~~~e~~~~~~~g~---~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~ 218 (385)
T TIGR00215 142 LLAILPFEKAFYQKKNV---PCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQL 218 (385)
T ss_pred hhccCCCcHHHHHhcCC---CEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHH
Confidence 99999888877766554 5678999998765432135667788899988889999999998864 222233333345
Q ss_pred hhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEe
Q 012492 294 LLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILN 370 (462)
Q Consensus 294 l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~ 370 (462)
+.+ ..|++++++..+.+. .+.+..+.++...++.+.+ .++..+|++||++|++||..|+ |++++|+|+|+.
T Consensus 219 l~~---~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~Vv~ 292 (385)
T TIGR00215 219 LEQ---QEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLID--GDARKAMFAADAALLASGTAAL-EAALIKTPMVVG 292 (385)
T ss_pred HHH---hCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEEC--chHHHHHHhCCEEeecCCHHHH-HHHHcCCCEEEE
Confidence 543 246777655444432 2333334444445666554 3788999999999999998776 999999999998
Q ss_pred c----CCC---C-----ccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCH----HHHHHHHHHHHhh----cC
Q 012492 371 D----YIP---G-----QEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKT----DELKRMSENALKL----AQ 426 (462)
Q Consensus 371 ~----~~~---~-----~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~----~~~~~m~~~a~~~----~~ 426 (462)
. .+. . .+..|+..+.+.++...+- +++.+++.+.+++ +|+ +.+++|.+...+. ..
T Consensus 293 yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~l~~ 371 (385)
T TIGR00215 293 YRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLL-ENGLKAYKEMHRERQFFEELRQRIYC 371 (385)
T ss_pred EcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHh-cCCcccHHHHHHHHHHHHHHHHHhcC
Confidence 3 321 1 1566888887777654332 4889999999999 788 7777776654443 44
Q ss_pred CcHHHHHHHHHHH
Q 012492 427 PEAVVDIVKDIHD 439 (462)
Q Consensus 427 ~~~~~~ia~~i~~ 439 (462)
..++++.++.|.+
T Consensus 372 ~~~~~~~a~~i~~ 384 (385)
T TIGR00215 372 NADSERAAQAVLE 384 (385)
T ss_pred CCHHHHHHHHHhh
Confidence 5677788887754
No 13
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.95 E-value=3.2e-25 Score=220.08 Aligned_cols=343 Identities=16% Similarity=0.105 Sum_probs=226.0
Q ss_pred eEEEEecCCC-chHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 64 NVLILMSDTG-GGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 64 kIli~~~~~G-~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
|||+++.+.| ||+...+.+|+++|.++|+ +|.+....+. + .... ...... ....... ....
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~---~v~v~~~~~~--~--~~~~---~~~~~~---~~~~~~~----~~~~- 62 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGH---QVAIISLTGE--S--EVKP---PIDATI---ILNLNMS----KNPL- 62 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCc---eEEEEEEeCC--C--Cccc---hhhccc---eEEeccc----ccch-
Confidence 5888876533 6999999999999999886 3443322111 1 0000 000000 0000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC--ccc----ccCCCcEE
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH--PTW----FHPRVNRC 216 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~--~~~----~~~~~d~~ 216 (462)
. .......+.+++++++||+|+++.+..... ..+.+.. ..++|++...|+..... ..| .....+.+
T Consensus 63 --~---~~~~~~~~~~~~~~~~pdiv~~~~~~~~~~-~~l~~~~--~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ 134 (360)
T cd04951 63 --S---FLLALWKLRKILRQFKPDVVHAHMFHANIF-ARLLRLF--LPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLT 134 (360)
T ss_pred --h---hHHHHHHHHHHHHhcCCCEEEEcccchHHH-HHHHHhh--CCCCcEEEEeeccCchhHHHHHHHHHHhhccCce
Confidence 0 112234566789999999999987654333 2233332 14678877666543110 111 22345677
Q ss_pred EEcCHHHHHHHHHcC-CCCCcEEEcCCCCChhhhccc-CChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhh
Q 012492 217 YCPSKEVAKRASYFG-LEVSQIRVFGLPIRPSFVRAV-ISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESL 294 (462)
Q Consensus 217 i~~s~~~~~~l~~~g-i~~~~i~v~g~pv~~~~~~~~-~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l 294 (462)
++.+....+.+.+.+ ++.+++.+++|+++...+... ......+++++++++.++++.+|+....++...+++++ ..+
T Consensus 135 ~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~-~~l 213 (360)
T cd04951 135 TNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAF-AKL 213 (360)
T ss_pred EEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHH-HHH
Confidence 788888888887764 677899999999986554321 23445777888887777666666655666677777665 444
Q ss_pred hcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHhCCCE
Q 012492 295 LDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIRGLPI 367 (462)
Q Consensus 295 ~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~Pv 367 (462)
.+. .|+++++++ |.+. ++.+.+++++...+|.+.|+.+++.++|+.||++|.+|. |++++|||++|+|+
T Consensus 214 ~~~---~~~~~l~i~-G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~Pv 289 (360)
T cd04951 214 LSD---YLDIKLLIA-GDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPV 289 (360)
T ss_pred Hhh---CCCeEEEEE-cCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCE
Confidence 432 367776654 4443 355566667777899999999999999999999999875 89999999999999
Q ss_pred EEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 012492 368 ILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 368 I~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~ 442 (462)
|+++.++.. +.+.+.|..+...+++++++++.++++++++.++.++++.....+.++++.+++.++++.+
T Consensus 290 I~~~~~~~~-----e~i~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 290 VATDAGGVR-----EVVGDSGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred EEecCCChh-----hEecCCceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 998864322 2344455555567899999999999855777788888774455678999999999999875
No 14
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.94 E-value=2.2e-24 Score=219.02 Aligned_cols=263 Identities=17% Similarity=0.193 Sum_probs=189.2
Q ss_pred hCCCEEEECCcccch--HHHHHHHHcCCCCCCeEEEEecCCCC--------CCc-----------ccccCCCcEEEEcCH
Q 012492 163 YKPDIIISVHPLMQH--IPLWVLKWQGLQKKVIFVTVITDLNT--------CHP-----------TWFHPRVNRCYCPSK 221 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~--~~~~~~~~~~~~~~iP~v~~~~d~~~--------~~~-----------~~~~~~~d~~i~~s~ 221 (462)
++||+||++.+.... ...++++. .++|+|..++|+.. ... .+..+.+|.++++|+
T Consensus 105 ~~~Div~~~~p~~~~~~~~~~~~~~----~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 180 (412)
T PRK10307 105 WRPDRVIGVVPTLFCAPGARLLARL----SGARTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSLLRRFDNVSTISR 180 (412)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHh----hCCCEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHHHhhCCEEEecCH
Confidence 799999998765322 22233443 47898877777531 000 123456899999999
Q ss_pred HHHHHHHHcCCCCCcEEEcCCCCChhhhcccC--ChHHHHHHcCCCCCCcEEEEEeCCCCC-ccHHHHHHHHHHhhhccc
Q 012492 222 EVAKRASYFGLEVSQIRVFGLPIRPSFVRAVI--SKDNLRLELQMDPILPAVLLMGGGEGM-GPVKETAMALGESLLDKE 298 (462)
Q Consensus 222 ~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~--~~~~~r~~l~l~~~~~~iLv~gG~~~~-~~~~~~l~~l~~~l~~~~ 298 (462)
...+.+.+.+++.+++.+++|+++.+.+.+.. .+..++++++++++.+++ ++.|+.+. +++..+++++ +.+.+
T Consensus 181 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~G~l~~~kg~~~li~a~-~~l~~-- 256 (412)
T PRK10307 181 SMMNKAREKGVAAEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIV-LYSGNIGEKQGLELVIDAA-RRLRD-- 256 (412)
T ss_pred HHHHHHHHcCCCcccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEE-EEcCccccccCHHHHHHHH-HHhcc--
Confidence 99999888888888999999999876554321 234678889998766544 45566665 5555566554 55543
Q ss_pred CCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC--------hhhHHHHHHhCC
Q 012492 299 TGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG--------PGTIAEALIRGL 365 (462)
Q Consensus 299 ~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg--------~~t~~EAla~G~ 365 (462)
.+++++++ +|.+. ++++.++++++. +|.|.|++ +++.++|+.||++|.++- ++.+.|||++|+
T Consensus 257 --~~~~~l~i-vG~g~~~~~l~~~~~~~~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~ 332 (412)
T PRK10307 257 --RPDLIFVI-CGQGGGKARLEKMAQCRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGR 332 (412)
T ss_pred --CCCeEEEE-ECCChhHHHHHHHHHHcCCC-ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCC
Confidence 46777654 56654 245556666665 79999997 689999999999887652 455899999999
Q ss_pred CEEEecCCCCccccchHHHHHCCceeee--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHh
Q 012492 366 PIILNDYIPGQEKGNVPYVVDNGAGVFT--RSPKETARIVTEWFSTKTDELKRMSENALKLAQ-PEAVVDIVKDIHDLAA 442 (462)
Q Consensus 366 PvI~~~~~~~~~~~n~~~l~~~G~g~~~--~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~-~~~~~~ia~~i~~l~~ 442 (462)
|||+++.++.. ...+++ +.|+++ .|+++++++|.+++ +|++.+++|++++++.+. .++++.+++.++++++
T Consensus 333 PVi~s~~~g~~----~~~~i~-~~G~~~~~~d~~~la~~i~~l~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 406 (412)
T PRK10307 333 NVVATAEPGTE----LGQLVE-GIGVCVEPESVEALVAAIAALA-RQALLRPKLGTVAREYAERTLDKENVLRQFIADIR 406 (412)
T ss_pred CEEEEeCCCch----HHHHHh-CCcEEeCCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999864321 112344 567666 47999999999999 799999999999999875 6899999999988876
Q ss_pred c
Q 012492 443 Q 443 (462)
Q Consensus 443 ~ 443 (462)
+
T Consensus 407 ~ 407 (412)
T PRK10307 407 G 407 (412)
T ss_pred H
Confidence 3
No 15
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.94 E-value=1.7e-24 Score=219.23 Aligned_cols=266 Identities=16% Similarity=0.102 Sum_probs=193.6
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC---------c---------ccccCCCcEEEEcCHHHH
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH---------P---------TWFHPRVNRCYCPSKEVA 224 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~---------~---------~~~~~~~d~~i~~s~~~~ 224 (462)
.+||+|+++.......+..+++. .++|+|...|+..... + .+..+.+|.+++.|+...
T Consensus 100 ~~~Diih~h~~~~~~~~~~~~~~----~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~ 175 (405)
T TIGR03449 100 GYYDLIHSHYWLSGQVGWLLRDR----WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEA 175 (405)
T ss_pred CCCCeEEechHHHHHHHHHHHHh----cCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHH
Confidence 48999999874443332233332 4789988777642100 0 012356899999999888
Q ss_pred HHHHH-cCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCC
Q 012492 225 KRASY-FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPI 303 (462)
Q Consensus 225 ~~l~~-~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~ 303 (462)
+.+.+ .+.+.+++.+++|+++...+.+ .++...+.+++++++.++++++|+....++...++.++ +.+.+. .|+
T Consensus 176 ~~~~~~~~~~~~ki~vi~ngvd~~~~~~-~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~-~~l~~~---~~~ 250 (405)
T TIGR03449 176 RDLVRHYDADPDRIDVVAPGADLERFRP-GDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAV-AELLDR---DPD 250 (405)
T ss_pred HHHHHHcCCChhhEEEECCCcCHHHcCC-CcHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHH-HHHHhh---CCC
Confidence 87765 5777789999999999876654 35566788899877777666655444455566666555 444332 344
Q ss_pred --ceEEEEccC---C-H---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEE
Q 012492 304 --GQLIIICGR---N-R---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLPII 368 (462)
Q Consensus 304 --~~~lvv~G~---~-~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI 368 (462)
+++++++|. + . ++.+..+++++.++|.|.|++ +++.++|+.||++|.+|. |.+++|||++|+|+|
T Consensus 251 ~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi 330 (405)
T TIGR03449 251 RNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVV 330 (405)
T ss_pred cceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEE
Confidence 666665542 2 1 355566677888899999997 689999999999998763 889999999999999
Q ss_pred EecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 369 LNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 369 ~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
+++.++.. +.+.+.+.|++++ |+++++++|.+++ ++++.+++|++++++.++.++|+.+++.+.++..+
T Consensus 331 ~~~~~~~~-----e~i~~~~~g~~~~~~d~~~la~~i~~~l-~~~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 331 AARVGGLP-----VAVADGETGLLVDGHDPADWADALARLL-DDPRTRIRMGAAAVEHAAGFSWAATADGLLSSYRD 401 (405)
T ss_pred EecCCCcH-----hhhccCCceEECCCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99874322 2344445677775 7999999999999 79999999999999988899999999999998864
No 16
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.94 E-value=6.8e-24 Score=212.52 Aligned_cols=345 Identities=13% Similarity=0.078 Sum_probs=219.0
Q ss_pred CeEEEEecCC-CchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhh
Q 012492 63 KNVLILMSDT-GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 141 (462)
Q Consensus 63 ~kIli~~~~~-G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 141 (462)
.||+.+..+. .||..+....|+++|.+.++ ++.++...+ .+ ........ .+..+.........
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~---~~~v~~~~~--~~----~~~~~~~~-------~~i~~~~~~~~~~~ 65 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRY---RHAVVALTE--VS----AFRKRIQR-------PDVAFYALHKQPGK 65 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhcccccc---ceEEEEcCC--CC----hhHHHHHh-------cCceEEEeCCCCCC
Confidence 4788777653 36999999999999988764 333331111 01 11110100 00001111000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEE-EecC--CCCCC-cc--------cc
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVT-VITD--LNTCH-PT--------WF 209 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~-~~~d--~~~~~-~~--------~~ 209 (462)
.....+++.+++++++||+|+++++.... ...+++. .++|... ..|. ....+ .. +.
T Consensus 66 -------~~~~~~~l~~~l~~~~~Divh~~~~~~~~-~~~~~~~----~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~ 133 (374)
T TIGR03088 66 -------DVAVYPQLYRLLRQLRPDIVHTRNLAALE-AQLPAAL----AGVPARIHGEHGRDVFDLDGSNWKYRWLRRLY 133 (374)
T ss_pred -------ChHHHHHHHHHHHHhCCCEEEEcchhHHH-HHHHHHh----cCCCeEEEeecCcccccchhhHHHHHHHHHHH
Confidence 12334567788999999999998654322 2233333 2556422 2221 11111 11 12
Q ss_pred cCCCcEEEEcCHHHHHHHHH-cCCCCCcEEEcCCCCChhhhcccC-ChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHH
Q 012492 210 HPRVNRCYCPSKEVAKRASY-FGLEVSQIRVFGLPIRPSFVRAVI-SKDNLRLELQMDPILPAVLLMGGGEGMGPVKETA 287 (462)
Q Consensus 210 ~~~~d~~i~~s~~~~~~l~~-~gi~~~~i~v~g~pv~~~~~~~~~-~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l 287 (462)
.+.+|.+++.|+...+.+.+ .+++.+++.+++|+++...+.+.. .+...+++...+++.++++.+|+....++...++
T Consensus 134 ~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li 213 (374)
T TIGR03088 134 RPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLV 213 (374)
T ss_pred HhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHH
Confidence 34678999999999988876 477888999999999876554321 2223333333444455555555444456666666
Q ss_pred HHHHHhhhcccC-CCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHH
Q 012492 288 MALGESLLDKET-GRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAE 359 (462)
Q Consensus 288 ~~l~~~l~~~~~-~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~E 359 (462)
+++. .+.+... ..+++++++ +|.+. ++.+.++++++..++.|.|+.+++.++|+.||++|++|. |.+++|
T Consensus 214 ~a~~-~l~~~~~~~~~~~~l~i-~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lE 291 (374)
T TIGR03088 214 RAFA-LLVRQLPEGAERLRLVI-VGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILE 291 (374)
T ss_pred HHHH-HHHHhCcccccceEEEE-ecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHH
Confidence 6553 3332111 123566554 45543 355666677888889999999999999999999998873 899999
Q ss_pred HHHhCCCEEEecCCCCccccchHHHHHCCceeee--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHH
Q 012492 360 ALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFT--RSPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKD 436 (462)
Q Consensus 360 Ala~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~--~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~ 436 (462)
||++|+|+|+++.++ ..+.+.+...|+++ .+++++++++.+++ +|++.+++|++++++.+ +.++++.+++.
T Consensus 292 Ama~G~Pvv~s~~~g-----~~e~i~~~~~g~~~~~~d~~~la~~i~~l~-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 365 (374)
T TIGR03088 292 AMASGLPVIATAVGG-----NPELVQHGVTGALVPPGDAVALARALQPYV-SDPAARRAHGAAGRARAEQQFSINAMVAA 365 (374)
T ss_pred HHHcCCCEEEcCCCC-----cHHHhcCCCceEEeCCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999998743 23334444457766 47999999999999 79999999999999887 68999999999
Q ss_pred HHHHHhc
Q 012492 437 IHDLAAQ 443 (462)
Q Consensus 437 i~~l~~~ 443 (462)
++++.++
T Consensus 366 ~~~~y~~ 372 (374)
T TIGR03088 366 YAGLYDQ 372 (374)
T ss_pred HHHHHHH
Confidence 9998753
No 17
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.93 E-value=2.3e-23 Score=207.07 Aligned_cols=312 Identities=19% Similarity=0.158 Sum_probs=213.7
Q ss_pred CeEEEEecCCC-chHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhh
Q 012492 63 KNVLILMSDTG-GGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 141 (462)
Q Consensus 63 ~kIli~~~~~G-~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 141 (462)
|||+++..+.+ +|+...+..++++|.++||. +.+++.+ +.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~-v~v~~~~------~~-------------------------------- 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVD-STMLVQE------KK-------------------------------- 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCc-eeEEEee------cc--------------------------------
Confidence 79999986533 79999999999999999862 2333221 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc---------------
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP--------------- 206 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~--------------- 206 (462)
.+.+.+++.+||+|+++...........+.... .++|+|...||......
T Consensus 42 -------------~~~~~~~~~~~diih~~~~~~~~~~~~~~~~~~--~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~ 106 (365)
T cd03825 42 -------------ALISKIEIINADIVHLHWIHGGFLSIEDLSKLL--DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTEC 106 (365)
T ss_pred -------------hhhhChhcccCCEEEEEccccCccCHHHHHHHH--cCCCEEEEcccCcccccccCCccccccccccC
Confidence 122346788999998866433222222222211 27899988887531100
Q ss_pred ---------------cc--------ccCCCcEEEEcCHHHHHHHHHcC-CCCCcEEEcCCCCChhhhcccCChHHHHHHc
Q 012492 207 ---------------TW--------FHPRVNRCYCPSKEVAKRASYFG-LEVSQIRVFGLPIRPSFVRAVISKDNLRLEL 262 (462)
Q Consensus 207 ---------------~~--------~~~~~d~~i~~s~~~~~~l~~~g-i~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l 262 (462)
.| +....+.++++|+...+.+.+.+ ++..++.+++|+++...+.+ .++...+..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~-~~~~~~~~~~ 185 (365)
T cd03825 107 GNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRP-RDKREARKRL 185 (365)
T ss_pred CCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCC-CcHHHHHHHh
Confidence 00 01234567888888887777654 67789999999998776543 4566677888
Q ss_pred CCCCCCcEEEEEeCCCC--CccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccch---h
Q 012492 263 QMDPILPAVLLMGGGEG--MGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFET---Q 337 (462)
Q Consensus 263 ~l~~~~~~iLv~gG~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~---~ 337 (462)
+++++.+++++.+.... .++...++.++ ..+.+. ..+++++ +++|.+..... .+...++.+.|+++ +
T Consensus 186 ~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~-~~l~~~--~~~~~~~-~i~G~~~~~~~----~~~~~~v~~~g~~~~~~~ 257 (365)
T cd03825 186 GLPADKKIILFGAVGGTDPRKGFDELIEAL-KRLAER--WKDDIEL-VVFGASDPEIP----PDLPFPVHYLGSLNDDES 257 (365)
T ss_pred CCCCCCeEEEEEecCCCccccCHHHHHHHH-HHhhhc--cCCCeEE-EEeCCCchhhh----ccCCCceEecCCcCCHHH
Confidence 88877665544443333 45555666555 445431 1256664 45566543111 13456899999985 6
Q ss_pred HHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCH
Q 012492 338 MEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKT 411 (462)
Q Consensus 338 ~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~ 411 (462)
+..+|+.||+++++|. |.+++|||++|+|+|+++.++..+ .+.+.+.|++++ +++++++++.+++ +|+
T Consensus 258 ~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e-----~~~~~~~g~~~~~~~~~~~~~~l~~l~-~~~ 331 (365)
T cd03825 258 LALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPD-----IVDHGVTGYLAKPGDPEDLAEGIEWLL-ADP 331 (365)
T ss_pred HHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChh-----heeCCCceEEeCCCCHHHHHHHHHHHH-hCH
Confidence 8899999999999874 899999999999999998754322 233344677665 7899999999999 799
Q ss_pred HHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHhc
Q 012492 412 DELKRMSENALKLAQ-PEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 412 ~~~~~m~~~a~~~~~-~~~~~~ia~~i~~l~~~ 443 (462)
+.+++|++++++.+. .++++.+++.+.+++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 332 DEREELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 999999999998874 68999999999998753
No 18
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.93 E-value=2e-23 Score=207.07 Aligned_cols=267 Identities=16% Similarity=0.115 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC--cccccCCCcEEEEcCHHHHHHHHH
Q 012492 152 YAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH--PTWFHPRVNRCYCPSKEVAKRASY 229 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~--~~~~~~~~d~~i~~s~~~~~~l~~ 229 (462)
....+.+.+++.+||+|++++.........+++. .++|+|...|+..... ..++...+|.+++.|+...+.+.+
T Consensus 66 ~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~ 141 (355)
T cd03819 66 NVARLRRLIREEKVDIVHARSRAPAWSAYLAARR----TRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRE 141 (355)
T ss_pred HHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHh----cCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHH
Confidence 3456678899999999999886654443333333 4899998888865211 122345689999999999988874
Q ss_pred -cCCCCCcEEEcCCCCChhhhcccC-Ch---HHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCc
Q 012492 230 -FGLEVSQIRVFGLPIRPSFVRAVI-SK---DNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIG 304 (462)
Q Consensus 230 -~gi~~~~i~v~g~pv~~~~~~~~~-~~---~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 304 (462)
.+++.+++.+++|+++...+.... .+ ..++++++++++.++++.+|+....++...+++.+ +.+.+. .+++
T Consensus 142 ~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~-~~l~~~---~~~~ 217 (355)
T cd03819 142 NYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEAL-ARLKKD---DPDV 217 (355)
T ss_pred hcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHH-HHHHhc---CCCe
Confidence 588888999999999876554311 11 12567777776666555555433345555555544 555442 3567
Q ss_pred eEEEEccCCH--HH----HHHHhhccCCCCeEEeccchhHHHHHHhcchheecC-----ChhhHHHHHHhCCCEEEecCC
Q 012492 305 QLIIICGRNR--TL----ASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKA-----GPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 305 ~~lvv~G~~~--~l----~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~s-----g~~t~~EAla~G~PvI~~~~~ 373 (462)
+++++++... .+ .+.+++++...+|.+.|+.+++.++|+.||++|++| .|++++|||++|+|+|+++.+
T Consensus 218 ~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~ 297 (355)
T cd03819 218 HLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG 297 (355)
T ss_pred EEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC
Confidence 7655443322 12 234455677789999999999999999999999887 288999999999999999864
Q ss_pred CCccccchHHHHHCCceeee--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-cHHH
Q 012492 374 PGQEKGNVPYVVDNGAGVFT--RSPKETARIVTEWFSTKTDELKRMSENALKLAQP-EAVV 431 (462)
Q Consensus 374 ~~~~~~n~~~l~~~G~g~~~--~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~-~~~~ 431 (462)
+. .+.+.+.+.|+.+ .++++++++|..++..+++.+++|++++++.+.. ++++
T Consensus 298 ~~-----~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~ 353 (355)
T cd03819 298 GA-----RETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYD 353 (355)
T ss_pred Cc-----HHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhc
Confidence 32 2234444467665 4799999999766646899999999999998753 4443
No 19
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.93 E-value=3.6e-23 Score=204.17 Aligned_cols=341 Identities=14% Similarity=0.086 Sum_probs=223.6
Q ss_pred eEEEEecC--CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhh
Q 012492 64 NVLILMSD--TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 141 (462)
Q Consensus 64 kIli~~~~--~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 141 (462)
||+++... . ||+...+..|+++|.+.++ ++.+..... .+ ........ .+..+........
T Consensus 1 ~i~~i~~~~~~-gG~~~~~~~l~~~l~~~~~---~v~~~~~~~--~~----~~~~~~~~-------~~i~v~~~~~~~~- 62 (365)
T cd03807 1 KVLHVITGLDV-GGAERMLVRLLKGLDRDRF---EHVVISLTD--RG----ELGEELEE-------AGVPVYCLGKRPG- 62 (365)
T ss_pred CeEEEEeeccC-ccHHHHHHHHHHHhhhccc---eEEEEecCc--ch----hhhHHHHh-------cCCeEEEEecccc-
Confidence 67777653 5 5999999999999988765 333322111 01 00000000 0000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC-----------ccccc
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH-----------PTWFH 210 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~-----------~~~~~ 210 (462)
........++.+++++.+||+|+++............+.. .+.|++...|+..... ..++.
T Consensus 63 -----~~~~~~~~~~~~~~~~~~~div~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (365)
T cd03807 63 -----RPDPGALLRLYKLIRRLRPDVVHTWMYHADLYGGLAARLA---GVPPVIWGIRHSDLDLGKKSTRLVARLRRLLS 134 (365)
T ss_pred -----cccHHHHHHHHHHHHhhCCCEEEeccccccHHHHHHHHhc---CCCcEEEEecCCcccccchhHhHHHHHHHHhc
Confidence 0112344567788999999999998755433322233321 3678887777654211 11234
Q ss_pred CCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhccc-CChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHH
Q 012492 211 PRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAV-ISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMA 289 (462)
Q Consensus 211 ~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~-~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~ 289 (462)
+..|.+++.|+...+.+.+.+++.+++.+++|+++...+... ..+...+++++++++.++++++|+....++...++.+
T Consensus 135 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a 214 (365)
T cd03807 135 SFIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRA 214 (365)
T ss_pred cccCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHH
Confidence 567888999999998888878888899999999986544332 2344566788988776655555544445566666655
Q ss_pred HHHhhhcccCCCCCceEEEEccCCH---HHHHHHh-hccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHH
Q 012492 290 LGESLLDKETGRPIGQLIIICGRNR---TLASTLQ-SEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEAL 361 (462)
Q Consensus 290 l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~-~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAl 361 (462)
+ +.+.+. .+++++++ +|.+. ....... ++++..++.+.|..+++.++|+.||+++.++. |++++|||
T Consensus 215 ~-~~l~~~---~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 289 (365)
T cd03807 215 A-ALLLKK---FPNARLLL-VGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAM 289 (365)
T ss_pred H-HHHHHh---CCCeEEEE-ecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHH
Confidence 5 444432 46777655 45543 2233333 56777899999999999999999999998874 78999999
Q ss_pred HhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHH
Q 012492 362 IRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQ-PEAVVDIVKDIHDL 440 (462)
Q Consensus 362 a~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~-~~~~~~ia~~i~~l 440 (462)
++|+|+|+++.++ +.+.+.+.|..+...+++++++++.+++ ++++.++++++++++.+. .++++++++.+.++
T Consensus 290 a~g~PvI~~~~~~-----~~e~~~~~g~~~~~~~~~~l~~~i~~l~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 363 (365)
T cd03807 290 ACGLPVVATDVGD-----NAELVGDTGFLVPPGDPEALAEAIEALL-ADPALRQALGEAARERIEENFSIEAMVEAYEEL 363 (365)
T ss_pred hcCCCEEEcCCCC-----hHHHhhcCCEEeCCCCHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999988643 2233444343333457999999999999 799999999999998875 68999999999887
Q ss_pred H
Q 012492 441 A 441 (462)
Q Consensus 441 ~ 441 (462)
+
T Consensus 364 y 364 (365)
T cd03807 364 Y 364 (365)
T ss_pred h
Confidence 5
No 20
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.93 E-value=1.4e-23 Score=212.19 Aligned_cols=266 Identities=12% Similarity=0.016 Sum_probs=183.6
Q ss_pred HHHHHHHHhhCCCEEEECCcccchH--HHHHHHHcCCCCCCeEEEEecCCCCCC----------cccccCCCcEEEEcCH
Q 012492 154 KEVEAGLMEYKPDIIISVHPLMQHI--PLWVLKWQGLQKKVIFVTVITDLNTCH----------PTWFHPRVNRCYCPSK 221 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~~~~~~--~~~~~~~~~~~~~iP~v~~~~d~~~~~----------~~~~~~~~d~~i~~s~ 221 (462)
..+.+.+++.+||+|+++++..... ...+++. .++|+|...|+..... ..+..+.+|.++++|.
T Consensus 78 ~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~----~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 153 (398)
T cd03796 78 PLLRNILIRERITIVHGHQAFSALAHEALLHART----MGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSH 153 (398)
T ss_pred HHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhh----cCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecH
Confidence 4566778899999999998654321 1223332 4789988777642111 0123467899999999
Q ss_pred HHHHHH-HHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCC
Q 012492 222 EVAKRA-SYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETG 300 (462)
Q Consensus 222 ~~~~~l-~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~ 300 (462)
...+.+ .+.+++++++.+++|+++...+.+...+ .+++.++++++|+....++...++.++ +.+.+ .
T Consensus 154 ~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~--------~~~~~~~i~~~grl~~~Kg~~~li~a~-~~l~~---~ 221 (398)
T cd03796 154 TSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK--------RDNDKITIVVISRLVYRKGIDLLVGII-PEICK---K 221 (398)
T ss_pred hHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc--------CCCCceEEEEEeccchhcCHHHHHHHH-HHHHh---h
Confidence 988765 3457788899999999987655431111 223445555555444445555555544 45543 2
Q ss_pred CCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEec
Q 012492 301 RPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILND 371 (462)
Q Consensus 301 ~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~ 371 (462)
.++++++++ |.+. .+.+.++++++.++|.|.|++ +++..+|+.||++|.+|. |.+++|||+||+|||+++
T Consensus 222 ~~~~~l~i~-G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~ 300 (398)
T cd03796 222 HPNVRFIIG-GDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTR 300 (398)
T ss_pred CCCEEEEEE-eCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECC
Confidence 467876654 5543 356666777888899999997 689999999999998873 789999999999999998
Q ss_pred CCCCccccchHHHHHCCceee-eCCHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHhc
Q 012492 372 YIPGQEKGNVPYVVDNGAGVF-TRSPKETARIVTEWFSTKTDELKRMSENALK-LAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 372 ~~~~~~~~n~~~l~~~G~g~~-~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~-~~~~~~~~~ia~~i~~l~~~ 443 (462)
.++.. .++..|.+++ ..+++++++++.+++ +++...+.+.+++++ ..+.++++.+++.+.++.++
T Consensus 301 ~gg~~------e~i~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 301 VGGIP------EVLPPDMILLAEPDVESIVRKLEEAI-SILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDR 367 (398)
T ss_pred CCCch------hheeCCceeecCCCHHHHHHHHHHHH-hChhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 75432 2334444443 457899999999999 566555566666655 45689999999999988754
No 21
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.93 E-value=1.1e-22 Score=205.42 Aligned_cols=268 Identities=13% Similarity=0.096 Sum_probs=187.9
Q ss_pred HHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc----------ccccCCCcEEEEcCHHHH
Q 012492 155 EVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP----------TWFHPRVNRCYCPSKEVA 224 (462)
Q Consensus 155 ~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~----------~~~~~~~d~~i~~s~~~~ 224 (462)
.+.+.+++.+||+||+++.........+++ .+. .+.|.+++.|..+.... .+..+.+|.++++|+..+
T Consensus 109 ~~~~~~~~~~~diihaH~~~~~~~~~~~~~-~~~-~~~~~~~t~Hg~d~~~~~~~~~~~~~~~~~~~~ad~vv~~S~~~~ 186 (406)
T PRK15427 109 ICAQVATPFVADVFIAHFGPAGVTAAKLRE-LGV-LRGKIATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLPISDLWA 186 (406)
T ss_pred HHhhhhccCCCCEEEEcCChHHHHHHHHHH-hCC-CCCCeEEEEcccccccchhhhhhhHHHHHHHHhCCEEEECCHHHH
Confidence 445667889999999988654332222222 111 23345556664321111 123356899999999999
Q ss_pred HHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCc
Q 012492 225 KRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIG 304 (462)
Q Consensus 225 ~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 304 (462)
+.+.+.|++++++.+++|+++...+.+.. +. .+.+...++.+|+....|+...+++++ +.+.+ +.+++
T Consensus 187 ~~l~~~g~~~~ki~vi~nGvd~~~f~~~~-~~-------~~~~~~~il~vGrl~~~Kg~~~ll~a~-~~l~~---~~~~~ 254 (406)
T PRK15427 187 GRLQKMGCPPEKIAVSRMGVDMTRFSPRP-VK-------APATPLEIISVARLTEKKGLHVAIEAC-RQLKE---QGVAF 254 (406)
T ss_pred HHHHHcCCCHHHEEEcCCCCCHHHcCCCc-cc-------cCCCCeEEEEEeCcchhcCHHHHHHHH-HHHHh---hCCCE
Confidence 99988898889999999999987654311 10 112223344444443445566666555 55554 24677
Q ss_pred eEEEEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----------hhhHHHHHHhCCCEEE
Q 012492 305 QLIIICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----------PGTIAEALIRGLPIIL 369 (462)
Q Consensus 305 ~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----------~~t~~EAla~G~PvI~ 369 (462)
++++ +|.++ ++++.++++++.++|.|.|++ +++.++|+.||++|.+|- |++++|||++|+|||+
T Consensus 255 ~l~i-vG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~ 333 (406)
T PRK15427 255 RYRI-LGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVS 333 (406)
T ss_pred EEEE-EECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEE
Confidence 7655 45553 356667778888999999998 689999999999998762 6889999999999999
Q ss_pred ecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHhc
Q 012492 370 NDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFST-KTDELKRMSENALKLA-QPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 370 ~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~-d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~l~~~ 443 (462)
++.++. .+.+.+...|++++ |+++++++|.+++ + |++.+++|++++++.+ +.++++.+++.+.+++++
T Consensus 334 t~~~g~-----~E~v~~~~~G~lv~~~d~~~la~ai~~l~-~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 334 TLHSGI-----PELVEADKSGWLVPENDAQALAQRLAAFS-QLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred eCCCCc-----hhhhcCCCceEEeCCCCHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 986432 22333344677764 7999999999999 6 9999999999999876 578999999999998864
No 22
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.92 E-value=2.4e-23 Score=212.75 Aligned_cols=277 Identities=12% Similarity=0.092 Sum_probs=184.6
Q ss_pred HHHHHHHHHHhh--CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc-----------------------
Q 012492 152 YAKEVEAGLMEY--KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP----------------------- 206 (462)
Q Consensus 152 ~~~~l~~~l~~~--kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~----------------------- 206 (462)
+...+.+.+++. +|||||++..........+++. .++|+|...|+......
T Consensus 100 ~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~----~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (439)
T TIGR02472 100 LADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRL----LGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRI 175 (439)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHH----hCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHH
Confidence 345666777754 7999999875433333333343 47899887775421100
Q ss_pred ---ccccCCCcEEEEcCHHHHHH-HHHc-CCCCCcEEEcCCCCChhhhcccCC---hHHH---HHHcCCCCCCcEEEEEe
Q 012492 207 ---TWFHPRVNRCYCPSKEVAKR-ASYF-GLEVSQIRVFGLPIRPSFVRAVIS---KDNL---RLELQMDPILPAVLLMG 275 (462)
Q Consensus 207 ---~~~~~~~d~~i~~s~~~~~~-l~~~-gi~~~~i~v~g~pv~~~~~~~~~~---~~~~---r~~l~l~~~~~~iLv~g 275 (462)
.+..+.+|.++++|...... +... +++++++.+++|+++.+.+.+... ...+ +++++.+++.++++.+|
T Consensus 176 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG 255 (439)
T TIGR02472 176 EAEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAIS 255 (439)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEc
Confidence 01234678899988665433 3333 678889999999999876543211 1112 23355556666666665
Q ss_pred CCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH---H-----------HHHHhhccCCCCeEEeccc--hhHH
Q 012492 276 GGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT---L-----------ASTLQSEEWKIPVKVRGFE--TQME 339 (462)
Q Consensus 276 G~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~---l-----------~~~~~~~~~~~~V~~~g~~--~~~~ 339 (462)
+....|+...+++++. .+... ....++++++|+++. + .+.++++++..+|.|.|++ +++.
T Consensus 256 rl~~~Kg~~~li~A~~-~l~~~---~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~ 331 (439)
T TIGR02472 256 RPDRRKNIPSLVEAYG-RSPKL---QEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVP 331 (439)
T ss_pred CCcccCCHHHHHHHHH-hChhh---hhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHH
Confidence 5555566666666553 22111 011233444565421 1 1223456788899999975 7899
Q ss_pred HHHHhc----chheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeee--CCHHHHHHHHHHHhcC
Q 012492 340 KWMGAC----DCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFT--RSPKETARIVTEWFST 409 (462)
Q Consensus 340 ~l~~~a----D~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~--~~~~~la~~i~~ll~~ 409 (462)
++|+.| |++|++|. |++++|||+||+|+|+++.++. .+.+.+...|+++ .|+++++++|.+++ +
T Consensus 332 ~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~-----~eiv~~~~~G~lv~~~d~~~la~~i~~ll-~ 405 (439)
T TIGR02472 332 ELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGP-----RDIIANCRNGLLVDVLDLEAIASALEDAL-S 405 (439)
T ss_pred HHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCc-----HHHhcCCCcEEEeCCCCHHHHHHHHHHHH-h
Confidence 999987 89998873 8999999999999999987432 2234333467776 47999999999999 7
Q ss_pred CHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHh
Q 012492 410 KTDELKRMSENALKLA-QPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 410 d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~l~~ 442 (462)
|++.+++|++++++.+ +.++|+.+++.++++++
T Consensus 406 ~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 406 DSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999998875 67999999999998874
No 23
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.92 E-value=7.4e-23 Score=204.40 Aligned_cols=271 Identities=16% Similarity=0.145 Sum_probs=188.1
Q ss_pred HHHHHHHHHHhhCCCEEEECCcccchHH-HHHHHHcCCCCCCeEEEEecCCCC--CC---c----c-cccCCCcEEEEcC
Q 012492 152 YAKEVEAGLMEYKPDIIISVHPLMQHIP-LWVLKWQGLQKKVIFVTVITDLNT--CH---P----T-WFHPRVNRCYCPS 220 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~~~~~~~-~~~~~~~~~~~~iP~v~~~~d~~~--~~---~----~-~~~~~~d~~i~~s 220 (462)
...++.+++++++||+|++++....... ..+++. .++|++++.....+ .. + + +..+.+|.++++|
T Consensus 74 ~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~----~~ipv~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s 149 (365)
T TIGR00236 74 MLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFY----LQIPVGHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPT 149 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHH----hCCCEEEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCC
Confidence 3467888999999999999986554332 233333 48999866432211 11 1 1 1234578999999
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCCChhhhcc-c-CChHHHHHHcCCCCCCcEEEEEeCCCCC--ccHHHHHHHHHHhhhc
Q 012492 221 KEVAKRASYFGLEVSQIRVFGLPIRPSFVRA-V-ISKDNLRLELQMDPILPAVLLMGGGEGM--GPVKETAMALGESLLD 296 (462)
Q Consensus 221 ~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~-~-~~~~~~r~~l~l~~~~~~iLv~gG~~~~--~~~~~~l~~l~~~l~~ 296 (462)
+..++.+.+.|+++++|.++||++.+.+... . ..+..++++++. +.++++++++.... ++...+++++ +.+.+
T Consensus 150 ~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~--~~~~vl~~~hr~~~~~k~~~~ll~a~-~~l~~ 226 (365)
T TIGR00236 150 EQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGE--DKRYILLTLHRRENVGEPLENIFKAI-REIVE 226 (365)
T ss_pred HHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcCC--CCCEEEEecCchhhhhhHHHHHHHHH-HHHHH
Confidence 9999999999999999999999974433221 1 123456666763 34577777765432 3344445444 34432
Q ss_pred ccCCCCCceEEEEccCCHHHHHHHh-hccCCCCeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 297 KETGRPIGQLIIICGRNRTLASTLQ-SEEWKIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 297 ~~~~~~~~~~lvv~G~~~~l~~~~~-~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
+.|+++++++++++......+. .++..++|.+.|.. .++..+|+.||++|++||+. +.||+++|+|+|+++..
T Consensus 227 ---~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg~~-~~EA~a~g~PvI~~~~~ 302 (365)
T TIGR00236 227 ---EFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDSGGV-QEEAPSLGKPVLVLRDT 302 (365)
T ss_pred ---HCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECChhH-HHHHHHcCCCEEECCCC
Confidence 2467777666565544333332 23555789999876 46778999999999999765 69999999999998644
Q ss_pred CCccccchHHHHHCCceeee-CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 012492 374 PGQEKGNVPYVVDNGAGVFT-RSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 374 ~~~~~~n~~~l~~~G~g~~~-~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~ 439 (462)
++.+ .+.+.|.++++ .+++++++++.+++ +|++.+++|+++...+.+..++++|++.+++
T Consensus 303 ~~~~-----e~~~~g~~~lv~~d~~~i~~ai~~ll-~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 303 TERP-----ETVEAGTNKLVGTDKENITKAAKRLL-TDPDEYKKMSNASNPYGDGEASERIVEELLN 363 (365)
T ss_pred CCCh-----HHHhcCceEEeCCCHHHHHHHHHHHH-hChHHHHHhhhcCCCCcCchHHHHHHHHHHh
Confidence 4333 24557777666 48999999999999 7999999999888778888899999998876
No 24
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.92 E-value=1.2e-22 Score=202.43 Aligned_cols=333 Identities=15% Similarity=0.143 Sum_probs=206.4
Q ss_pred CeEEEEecC---CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcch
Q 012492 63 KNVLILMSD---TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW 139 (462)
Q Consensus 63 ~kIli~~~~---~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 139 (462)
|||++++.. . ||-.+....++++|.++|+ ++++++... +.... ..+......... +... .
T Consensus 1 mkI~~~~~~~~~~-GG~e~~~~~l~~~L~~~~~-g~~v~v~~~-----~~~~~---~~~~~~~~~~~~----~~~~---~ 63 (359)
T PRK09922 1 MKIAFIGEAVSGF-GGMETVISNVINTFEESKI-NCEMFFFCR-----NDKMD---KAWLKEIKYAQS----FSNI---K 63 (359)
T ss_pred CeeEEecccccCC-CchhHHHHHHHHHhhhcCc-ceeEEEEec-----CCCCC---hHHHHhcchhcc----cccc---h
Confidence 799999753 4 5999999999999999843 246665421 11100 001000000000 0000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC--CCcc-cccCCCcEE
Q 012492 140 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT--CHPT-WFHPRVNRC 216 (462)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~--~~~~-~~~~~~d~~ 216 (462)
+. +. .......++.+.+++++||+|+++.+........+.+..+ ...+++.+.|.... .+.. .....+|.+
T Consensus 64 ~~--~~--~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~ 137 (359)
T PRK09922 64 LS--FL--RRAKHVYNFSKWLKETQPDIVICIDVISCLYANKARKKSG--KQFKIFSWPHFSLDHKKHAECKKITCADYH 137 (359)
T ss_pred hh--hh--cccHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHHHHhC--CCCeEEEEecCcccccchhhhhhhhcCCEE
Confidence 00 00 0012235667889999999999988654333222333322 24455554442110 0001 113578999
Q ss_pred EEcCHHHHHHHHHcCCCCCcEEEcCCCCChh-hhcccCChHHHHHHcCCCCCCcEEEEEeCCC--CCccHHHHHHHHHHh
Q 012492 217 YCPSKEVAKRASYFGLEVSQIRVFGLPIRPS-FVRAVISKDNLRLELQMDPILPAVLLMGGGE--GMGPVKETAMALGES 293 (462)
Q Consensus 217 i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~-~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~--~~~~~~~~l~~l~~~ 293 (462)
+++|+..++.+.+.|++.+++.+++|+++.. +..+ .+. ..+.++++++|+.. +.++...+++++. .
T Consensus 138 i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~--~~~--------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~-~ 206 (359)
T PRK09922 138 LAISSGIKEQMMARGISAQRISVIYNPVEIKTIIIP--PPE--------RDKPAVFLYVGRLKFEGQKNVKELFDGLS-Q 206 (359)
T ss_pred EEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCC--Ccc--------cCCCcEEEEEEEEecccCcCHHHHHHHHH-h
Confidence 9999999999988898888999999999843 3221 110 12345566666432 3466666666553 3
Q ss_pred hhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccch----hHHHHHHhcchheecCC----hhhHHHHHH
Q 012492 294 LLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFET----QMEKWMGACDCIITKAG----PGTIAEALI 362 (462)
Q Consensus 294 l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~----~~~~l~~~aD~vV~~sg----~~t~~EAla 362 (462)
+. ++++++++ |.+. .+.+.++++++..+|+|.|+++ ++.++|+.||++|.+|. |.+++|||+
T Consensus 207 ~~------~~~~l~iv-G~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma 279 (359)
T PRK09922 207 TT------GEWQLHII-GDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMS 279 (359)
T ss_pred hC------CCeEEEEE-eCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHH
Confidence 32 35666554 4443 3566667778888999999974 46677888999998874 999999999
Q ss_pred hCCCEEEecCCCCccccchHHHHHCC-ceeee--CCHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhcCCcHHHHHHHHH
Q 012492 363 RGLPIILNDYIPGQEKGNVPYVVDNG-AGVFT--RSPKETARIVTEWFSTKTD--ELKRMSENALKLAQPEAVVDIVKDI 437 (462)
Q Consensus 363 ~G~PvI~~~~~~~~~~~n~~~l~~~G-~g~~~--~~~~~la~~i~~ll~~d~~--~~~~m~~~a~~~~~~~~~~~ia~~i 437 (462)
||+|+|++++.++. ..++..| .|+++ .|+++++++|.+++ +|++ ....++++++++.......++++.+
T Consensus 280 ~G~Pvv~s~~~~g~-----~eiv~~~~~G~lv~~~d~~~la~~i~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (359)
T PRK09922 280 YGIPCISSDCMSGP-----RDIIKPGLNGELYTPGNIDEFVGKLNKVI-SGEVKYQHDAIPNSIERFYEVLYFKNLNNAL 353 (359)
T ss_pred cCCCEEEeCCCCCh-----HHHccCCCceEEECCCCHHHHHHHHHHHH-hCcccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999843332 2344444 57665 47999999999999 6887 4566677777776666666666666
Q ss_pred HHHHh
Q 012492 438 HDLAA 442 (462)
Q Consensus 438 ~~l~~ 442 (462)
.++++
T Consensus 354 ~~~~~ 358 (359)
T PRK09922 354 FSKLQ 358 (359)
T ss_pred HHHhc
Confidence 66554
No 25
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.92 E-value=1.4e-22 Score=203.79 Aligned_cols=265 Identities=13% Similarity=0.082 Sum_probs=185.9
Q ss_pred HhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc-----------------ccccCCCcEEEEcCHHH
Q 012492 161 MEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP-----------------TWFHPRVNRCYCPSKEV 223 (462)
Q Consensus 161 ~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~-----------------~~~~~~~d~~i~~s~~~ 223 (462)
+..+||+||+++.+.......+++. .++|+|...|+.....+ .+..+.+|.++++|+..
T Consensus 80 ~~~~~divh~~~~~~~~~~~~~~~~----~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 155 (388)
T TIGR02149 80 DPVDADVVHSHTWYTFLAGHLAKKL----YDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGGM 155 (388)
T ss_pred CCCCCCeEeecchhhhhHHHHHHHh----cCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccHHH
Confidence 3457999999876554332223332 48999988887532100 01234679999999999
Q ss_pred HHHHHHc--CCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCC
Q 012492 224 AKRASYF--GLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGR 301 (462)
Q Consensus 224 ~~~l~~~--gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~ 301 (462)
++.+.+. +++..++.+++|+++...+.+ ..+...+++++++++.++++++|+....++...++.++ +.+.
T Consensus 156 ~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~-~~l~------ 227 (388)
T TIGR02149 156 REDILKYYPDLDPEKVHVIYNGIDTKEYKP-DDGNVVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAV-HYIP------ 227 (388)
T ss_pred HHHHHHHcCCCCcceEEEecCCCChhhcCC-CchHHHHHHhCCCCCceEEEEEcccccccCHHHHHHHH-HHHh------
Confidence 8888764 567788999999998876654 34566788899987777776666555556666666554 4443
Q ss_pred CCceEEEEccCCH--HH----HHHHhhccC-CCCeEEe-ccc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCCE
Q 012492 302 PIGQLIIICGRNR--TL----ASTLQSEEW-KIPVKVR-GFE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLPI 367 (462)
Q Consensus 302 ~~~~~lvv~G~~~--~l----~~~~~~~~~-~~~V~~~-g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~Pv 367 (462)
+++++++++|... ++ ++.+.+++. ..++.++ |++ +++.++|+.||++|.+|. |.+++|||++|+|+
T Consensus 228 ~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~Pv 307 (388)
T TIGR02149 228 KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPV 307 (388)
T ss_pred hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCE
Confidence 2456655544321 22 333333333 3457765 444 689999999999998863 88999999999999
Q ss_pred EEecCCCCccccchHHHHHCCceeeeC--CH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHHHH
Q 012492 368 ILNDYIPGQEKGNVPYVVDNGAGVFTR--SP------KETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKDIH 438 (462)
Q Consensus 368 I~~~~~~~~~~~n~~~l~~~G~g~~~~--~~------~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~ 438 (462)
|+++.++ ..+.+.+.+.|++++ ++ ++++++|.+++ +|++.+++|++++++.+ +.++|+.+++.+.
T Consensus 308 I~s~~~~-----~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~-~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 381 (388)
T TIGR02149 308 VASATGG-----IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILL-ADPELAKKMGIAGRKRAEEEFSWGSIAKKTV 381 (388)
T ss_pred EEeCCCC-----HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9998643 222344444677765 45 78999999999 79999999999999876 5799999999999
Q ss_pred HHHhc
Q 012492 439 DLAAQ 443 (462)
Q Consensus 439 ~l~~~ 443 (462)
++.++
T Consensus 382 ~~y~~ 386 (388)
T TIGR02149 382 EMYRK 386 (388)
T ss_pred HHHHh
Confidence 88763
No 26
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.92 E-value=3.3e-22 Score=210.70 Aligned_cols=278 Identities=10% Similarity=0.039 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe-cCCCCC-Cc-cc------c-----cCCCcE
Q 012492 150 AYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI-TDLNTC-HP-TW------F-----HPRVNR 215 (462)
Q Consensus 150 ~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~-~d~~~~-~~-~~------~-----~~~~d~ 215 (462)
....+++.+++++++|||||++..........+++. .++|+|.+. |..... .+ .| + ....+.
T Consensus 386 ~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~----~gvPvIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~~~~i 461 (694)
T PRK15179 386 IEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALL----AGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRGVA 461 (694)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHH----cCCCEEEEEeCCCccccchhHHHHHHHHHHHHHHhcCCeE
Confidence 345678889999999999999886654443344443 378876533 332110 00 11 0 112345
Q ss_pred EEEcCHHHHHHHHH-cCCCCCcEEEcCCCCChhhhcccCChHHHHHH--cCCCCCCcEEEEEeCCCCCccHHHHHHHHHH
Q 012492 216 CYCPSKEVAKRASY-FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLE--LQMDPILPAVLLMGGGEGMGPVKETAMALGE 292 (462)
Q Consensus 216 ~i~~s~~~~~~l~~-~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~--l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~ 292 (462)
+++.|...++.+.+ .+++.+++.+++|+++...+.+.......+.+ ...+++.++|+.+|+....|+...++.++.+
T Consensus 462 ~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~ 541 (694)
T PRK15179 462 LSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQR 541 (694)
T ss_pred EEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHH
Confidence 66778877777765 58888899999999987654421111111122 2234445556666655555666666666544
Q ss_pred hhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHhCC
Q 012492 293 SLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIRGL 365 (462)
Q Consensus 293 ~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~ 365 (462)
.+.+ .|+++++++ |.+. ++++.++++++.++|.|.|+.+++..+|+.||++|.+|. |++++|||++|+
T Consensus 542 l~~~----~p~~~LvIv-G~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~ 616 (694)
T PRK15179 542 FAAS----HPKVRFIMV-GGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV 616 (694)
T ss_pred HHHH----CcCeEEEEE-ccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCC
Confidence 3332 577876654 4443 366777778889999999999999999999999998763 899999999999
Q ss_pred CEEEecCCCCccccchHHHHHCCceeeeC--C--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHH
Q 012492 366 PIILNDYIPGQEKGNVPYVVDNGAGVFTR--S--PKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKDIHDL 440 (462)
Q Consensus 366 PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~--~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~l 440 (462)
|||+++.++ ..+.+.+...|++++ | ++++++++.+++ .+......|++++++.+ +.|+++.+++.+.++
T Consensus 617 PVVat~~gG-----~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll-~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~l 690 (694)
T PRK15179 617 PVVTTLAGG-----AGEAVQEGVTGLTLPADTVTAPDVAEALARIH-DMCAADPGIARKAADWASARFSLNQMIASTVRC 690 (694)
T ss_pred eEEEECCCC-----hHHHccCCCCEEEeCCCCCChHHHHHHHHHHH-hChhccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999998743 222333444688875 3 457888888877 45555566778888776 589999999999987
Q ss_pred Hh
Q 012492 441 AA 442 (462)
Q Consensus 441 ~~ 442 (462)
.+
T Consensus 691 Y~ 692 (694)
T PRK15179 691 YQ 692 (694)
T ss_pred hC
Confidence 64
No 27
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.92 E-value=3.6e-22 Score=197.18 Aligned_cols=264 Identities=17% Similarity=0.131 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHhhCCCEEEECCcccchHHHH-HHHHcCCCCCCeEEEEecCCCCC--CcccccCCCcEEEEcCHHHHHHH
Q 012492 151 YYAKEVEAGLMEYKPDIIISVHPLMQHIPLW-VLKWQGLQKKVIFVTVITDLNTC--HPTWFHPRVNRCYCPSKEVAKRA 227 (462)
Q Consensus 151 ~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~-~~~~~~~~~~iP~v~~~~d~~~~--~~~~~~~~~d~~i~~s~~~~~~l 227 (462)
.....+.+++++.+||+|+++++......++ .++. .++|+|...||.... ...+.....|.++++|+...+.+
T Consensus 83 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~----~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 158 (359)
T cd03823 83 AVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARD----RGIPIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLLDRY 158 (359)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHh----cCCCEEEEEeeeeeecchhhhhccCCCEEEEeCHHHHHHH
Confidence 3455677889999999999988643332222 2232 379999888886421 12233344599999999999998
Q ss_pred HHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEE
Q 012492 228 SYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLI 307 (462)
Q Consensus 228 ~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~l 307 (462)
.+.+.++.++.+++|+++........ + +.+.+.+.++++|+....++...++.. ++.+.+ ++++++
T Consensus 159 ~~~~~~~~~~~vi~n~~~~~~~~~~~-~-------~~~~~~~~i~~~G~~~~~k~~~~li~~-~~~l~~-----~~~~l~ 224 (359)
T cd03823 159 VANGLFAEKISVIRNGIDLDRAKRPR-R-------APPGGRLRFGFIGQLTPHKGVDLLLEA-FKRLPR-----GDIELV 224 (359)
T ss_pred HHcCCCccceEEecCCcChhhccccc-c-------CCCCCceEEEEEecCccccCHHHHHHH-HHHHHh-----cCcEEE
Confidence 88877667899999999876654311 1 233444555555544444555544444 445542 356655
Q ss_pred EEccCCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecC-----ChhhHHHHHHhCCCEEEecCCCCccccc
Q 012492 308 IICGRNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKA-----GPGTIAEALIRGLPIILNDYIPGQEKGN 380 (462)
Q Consensus 308 vv~G~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~s-----g~~t~~EAla~G~PvI~~~~~~~~~~~n 380 (462)
+ +|.+..........+...+|.+.|++ +++.++|+.||+++++| .|.+++|||++|+|+|+++.++ .
T Consensus 225 i-~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~-----~ 298 (359)
T cd03823 225 I-VGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGG-----M 298 (359)
T ss_pred E-EcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCC-----H
Confidence 4 56554211111111456789999998 89999999999999765 3789999999999999988643 2
Q ss_pred hHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 012492 381 VPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 381 ~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~ 442 (462)
.+.+.+.+.|+.+. |.+++++++.+++ +|++.+++|++++++.... +.+++.++++++
T Consensus 299 ~e~i~~~~~g~~~~~~d~~~l~~~i~~l~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 358 (359)
T cd03823 299 AELVRDGVNGLLFPPGDAEDLAAALERLI-DDPDLLERLRAGIEPPRSI---EDQAEEYLKLYR 358 (359)
T ss_pred HHHhcCCCcEEEECCCCHHHHHHHHHHHH-hChHHHHHHHHhHHHhhhH---HHHHHHHHHHhh
Confidence 33444444677664 5899999999999 7999999999998876654 888888888764
No 28
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.92 E-value=2.3e-22 Score=201.46 Aligned_cols=265 Identities=13% Similarity=0.090 Sum_probs=180.9
Q ss_pred HHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC--c-----ccccCCCcEEEEcCHHHHHHHHHcC
Q 012492 159 GLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH--P-----TWFHPRVNRCYCPSKEVAKRASYFG 231 (462)
Q Consensus 159 ~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~--~-----~~~~~~~d~~i~~s~~~~~~l~~~g 231 (462)
.+.+.+||+|+++.+..... ..++.. .++|+|...|...... . .++...+|.+++.+. .+...+
T Consensus 80 ~~~~~~~Dvv~~h~~~~~~~--~~~~~~---~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~~----~~~~~~ 150 (372)
T cd03792 80 PLLDLDADVVVIHDPQPLAL--PLFKKK---RGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHLP----EYVPPQ 150 (372)
T ss_pred ccccCCCCEEEECCCCchhH--HHhhhc---CCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecHH----HhcCCC
Confidence 35678999999988764332 222221 3788876665322111 0 112345788887773 233446
Q ss_pred CCCCcEEEcCCCCChhh-hcccC---ChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEE
Q 012492 232 LEVSQIRVFGLPIRPSF-VRAVI---SKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLI 307 (462)
Q Consensus 232 i~~~~i~v~g~pv~~~~-~~~~~---~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~l 307 (462)
++..++ +++|++++.. ..... ....+++++++++++++++.+|+....|+...+++++ +.+.+ ..++++++
T Consensus 151 ~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~-~~l~~---~~~~~~l~ 225 (372)
T cd03792 151 VPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAY-RKVKE---RVPDPQLV 225 (372)
T ss_pred CCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHH-HHHHh---hCCCCEEE
Confidence 666656 8999998642 11111 2345778899988888777766555556666666555 44443 13677766
Q ss_pred EEccCCH------HHHHHHh-hccCCCCeEEeccc----hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecC
Q 012492 308 IICGRNR------TLASTLQ-SEEWKIPVKVRGFE----TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 308 vv~G~~~------~l~~~~~-~~~~~~~V~~~g~~----~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~ 372 (462)
++++... ++.+.+. ..+..+++.+.|+. +++..+|+.||+++.+|. |++++|||++|+|+|+++.
T Consensus 226 i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~ 305 (372)
T cd03792 226 LVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPV 305 (372)
T ss_pred EEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCC
Confidence 5443221 1222322 35667789999876 688899999999998874 8999999999999999986
Q ss_pred CCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHhc
Q 012492 373 IPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 373 ~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~l~~~ 443 (462)
++. .+.+.+...|+.+++++.++++|.+++ +|++.+++|++++++.+ +.++|+.+++.+.+++++
T Consensus 306 ~~~-----~~~i~~~~~g~~~~~~~~~a~~i~~ll-~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 306 GGI-----PLQIEDGETGFLVDTVEEAAVRILYLL-RDPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred CCc-----hhhcccCCceEEeCCcHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 432 233445557888888899999999999 79999999999999976 579999999999998764
No 29
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.92 E-value=2e-22 Score=201.99 Aligned_cols=260 Identities=17% Similarity=0.175 Sum_probs=188.3
Q ss_pred HHHHHHHhh--CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe-cCCCCC------------------C-------c
Q 012492 155 EVEAGLMEY--KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI-TDLNTC------------------H-------P 206 (462)
Q Consensus 155 ~l~~~l~~~--kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~-~d~~~~------------------~-------~ 206 (462)
+-.+.++++ +||+|++++.+. ++.+|+. .++|++.+. |+.+.. . .
T Consensus 82 ~~~~~~~~~~~~p~~v~~~Gg~v---~~~aA~~----~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n 154 (396)
T TIGR03492 82 GQWRALRKWAKKGDLIVAVGDIV---PLLFAWL----SGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERW 154 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECcHH---HHHHHHH----cCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHHHHH
Confidence 445678999 999999999987 3556654 488987633 333211 1 1
Q ss_pred ccccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHH-
Q 012492 207 TWFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKE- 285 (462)
Q Consensus 207 ~~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~- 285 (462)
.+..+.++.+++.++...+.+.+.|+ ++.++|||+.+.+... .+. +++++.+++++++|+.+.+....
T Consensus 155 ~l~~~~a~~v~~~~~~t~~~l~~~g~---k~~~vGnPv~d~l~~~--~~~------~l~~~~~~lllLpGSR~ae~~~~l 223 (396)
T TIGR03492 155 LMRSRRCLAVFVRDRLTARDLRRQGV---RASYLGNPMMDGLEPP--ERK------PLLTGRFRIALLPGSRPPEAYRNL 223 (396)
T ss_pred HhhchhhCEEeCCCHHHHHHHHHCCC---eEEEeCcCHHhcCccc--ccc------ccCCCCCEEEEECCCCHHHHHccH
Confidence 23346788999999999988887776 7999999998876532 111 56667788999999998754433
Q ss_pred -HHHHHHHhhhcccCCCCCceEEEEc-cCCH--HHHHHHhhccCC--------------CCeEEeccchhHHHHHHhcch
Q 012492 286 -TAMALGESLLDKETGRPIGQLIIIC-GRNR--TLASTLQSEEWK--------------IPVKVRGFETQMEKWMGACDC 347 (462)
Q Consensus 286 -~l~~l~~~l~~~~~~~~~~~~lvv~-G~~~--~l~~~~~~~~~~--------------~~V~~~g~~~~~~~l~~~aD~ 347 (462)
.+.++++.+.+ .+++++++.+ |... .+.+.+++.++. .++.+..+.++|.++|++||+
T Consensus 224 p~~l~al~~L~~----~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl 299 (396)
T TIGR03492 224 KLLLRALEALPD----SQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL 299 (396)
T ss_pred HHHHHHHHHHhh----CCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE
Confidence 44444455543 1567787777 5442 344445443432 236777788899999999999
Q ss_pred heecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHC----Cceeee-C-CHHHHHHHHHHHhcCCHHHHHHHHH-H
Q 012492 348 IITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN----GAGVFT-R-SPKETARIVTEWFSTKTDELKRMSE-N 420 (462)
Q Consensus 348 vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~----G~g~~~-~-~~~~la~~i~~ll~~d~~~~~~m~~-~ 420 (462)
+|++||+.| .|++++|+|+|+.|... +|. |+..+... |..+.+ . +++.+++.+.+++ +|++.+++|.+ .
T Consensus 300 vI~rSGt~T-~E~a~lg~P~Ilip~~~-~q~-na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll-~d~~~~~~~~~~~ 375 (396)
T TIGR03492 300 GIAMAGTAT-EQAVGLGKPVIQLPGKG-PQF-TYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLL-ADPELLERCRRNG 375 (396)
T ss_pred EEECcCHHH-HHHHHhCCCEEEEeCCC-CHH-HHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHH-cCHHHHHHHHHHH
Confidence 999999877 99999999999999754 455 88777763 554444 3 4789999999999 79999999984 4
Q ss_pred HHhhcCCcHHHHHHHHHHHH
Q 012492 421 ALKLAQPEAVVDIVKDIHDL 440 (462)
Q Consensus 421 a~~~~~~~~~~~ia~~i~~l 440 (462)
.+++.+++++++|++.+.++
T Consensus 376 ~~~lg~~~a~~~ia~~i~~~ 395 (396)
T TIGR03492 376 QERMGPPGASARIAESILKQ 395 (396)
T ss_pred HHhcCCCCHHHHHHHHHHHh
Confidence 45667889999999988775
No 30
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.92 E-value=3.8e-22 Score=201.38 Aligned_cols=277 Identities=12% Similarity=0.070 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEE-ecCCCCCC------cc--------cccCCCcEE
Q 012492 152 YAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTV-ITDLNTCH------PT--------WFHPRVNRC 216 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~-~~d~~~~~------~~--------~~~~~~d~~ 216 (462)
-...+..++++.+||+||++....+.....+++. .++|++.. .|.+.... .. +..+.+| +
T Consensus 268 ~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~l----agvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~ 342 (578)
T PRK15490 268 GIKHLVPHLCERKLDYLSVWQDGACLMIALAALI----AGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-F 342 (578)
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHh----cCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-h
Confidence 3457778999999999999886654433334443 37888543 23211000 00 1122334 5
Q ss_pred EEcCHHHHHHHHH-cCCCCCcEEEcCCCCChhhhcccCC-hHHHHHH--cCCCCCCcEEEEEeCCCCCccHHHHHHHHHH
Q 012492 217 YCPSKEVAKRASY-FGLEVSQIRVFGLPIRPSFVRAVIS-KDNLRLE--LQMDPILPAVLLMGGGEGMGPVKETAMALGE 292 (462)
Q Consensus 217 i~~s~~~~~~l~~-~gi~~~~i~v~g~pv~~~~~~~~~~-~~~~r~~--l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~ 292 (462)
++.+...++.+.+ .++|++++.+++|+++...+.+..+ +...+.. .+++++.++++.+|...+.++...++.++.+
T Consensus 343 v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~ 422 (578)
T PRK15490 343 MSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAAR 422 (578)
T ss_pred hhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHH
Confidence 6677777777765 4889999999999998765443211 1123332 3445556666677776777777777776655
Q ss_pred hhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHhCC
Q 012492 293 SLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIRGL 365 (462)
Q Consensus 293 ~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~ 365 (462)
.+.+ .|++++++ +|++. ++.+.++++++.++|+|.|+.+++.++|+.||++|.+|. |++++|||++|+
T Consensus 423 llk~----~pdirLvI-VGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl 497 (578)
T PRK15490 423 YLQH----HPATRFVL-VGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV 497 (578)
T ss_pred HHhH----CCCeEEEE-EeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCC
Confidence 4443 47787655 45554 355667778888999999999999999999999998863 899999999999
Q ss_pred CEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHH---HHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHHHHH
Q 012492 366 PIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIV---TEWFSTKTDELKRMSENALKLA-QPEAVVDIVKDIHD 439 (462)
Q Consensus 366 PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i---~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~ 439 (462)
|||+++.++ +.+.+.+...|++++ |++.+++++ ..+. .+.+.+..|++++++++ +.|+++.+++.+.+
T Consensus 498 PVVATdvGG-----~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~-~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~k 571 (578)
T PRK15490 498 PVISTPAGG-----SAECFIEGVSGFILDDAQTVNLDQACRYAEKLV-NLWRSRTGICQQTQSFLQERFTVEHMVGTFVK 571 (578)
T ss_pred CEEEeCCCC-----cHHHcccCCcEEEECCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 999998743 333455555788875 455666655 3444 45556778999999987 56999999999999
Q ss_pred HHhcc
Q 012492 440 LAAQR 444 (462)
Q Consensus 440 l~~~~ 444 (462)
++..+
T Consensus 572 i~~~~ 576 (578)
T PRK15490 572 TIASQ 576 (578)
T ss_pred HHHhc
Confidence 88754
No 31
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.92 E-value=1.2e-22 Score=201.10 Aligned_cols=265 Identities=18% Similarity=0.245 Sum_probs=183.7
Q ss_pred HHHHHHHHhhCCCEEEECCcccchH-HHHHHHHcCCCCCCeEEEEecCCCCCC----------------cccccCCCcEE
Q 012492 154 KEVEAGLMEYKPDIIISVHPLMQHI-PLWVLKWQGLQKKVIFVTVITDLNTCH----------------PTWFHPRVNRC 216 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~~~~~~-~~~~~~~~~~~~~iP~v~~~~d~~~~~----------------~~~~~~~~d~~ 216 (462)
..+.+.+++++||+|+++.+..... ...+++. .++|++...|+..... ..++.+.+|.+
T Consensus 73 ~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 148 (364)
T cd03814 73 RRVRRLLDAFAPDVVHIATPGPLGLAALRAARR----LGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRV 148 (364)
T ss_pred hhHHHHHHhcCCCEEEEeccchhhHHHHHHHHH----cCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEE
Confidence 3456678999999999876543322 2223332 4899988777642100 01234568999
Q ss_pred EEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCC-CccHHHHHHHHHHhhh
Q 012492 217 YCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEG-MGPVKETAMALGESLL 295 (462)
Q Consensus 217 i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~-~~~~~~~l~~l~~~l~ 295 (462)
+++|+...+.+.+.+. .++.+++++++...+.+.......+.+++ +.+.+.+ ++.|+.. .++...++. +++.+.
T Consensus 149 ~~~s~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~i-~~~G~~~~~k~~~~~i~-~~~~l~ 223 (364)
T cd03814 149 LVPSPSLADELRARGF--RRVRLWPRGVDTELFHPRRRDEALRARLG-PPDRPVL-LYVGRLAPEKNLEALLD-ADLPLR 223 (364)
T ss_pred EeCCHHHHHHHhccCC--CceeecCCCccccccCcccccHHHHHHhC-CCCCeEE-EEEeccccccCHHHHHH-HHHHhh
Confidence 9999999886554443 57889999998766554333344455565 3344444 4445554 444544444 445554
Q ss_pred cccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEE
Q 012492 296 DKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIIL 369 (462)
Q Consensus 296 ~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~ 369 (462)
+ . ++++++ ++|.+.. ...++ +...+|.+.|++ +++.++|+.||+++.++. |++++|||++|+|+|+
T Consensus 224 ~---~-~~~~l~-i~G~~~~-~~~~~--~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~ 295 (364)
T cd03814 224 R---R-PPVRLV-IVGDGPA-RARLE--ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVA 295 (364)
T ss_pred h---c-CCceEE-EEeCCch-HHHHh--ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEE
Confidence 4 1 467655 4565542 22333 446789999975 689999999999998874 7999999999999999
Q ss_pred ecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 012492 370 NDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 370 ~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~ 441 (462)
++.++ +.+.+.+.+.|+++. +.+++++++.+++ +|++.+++|++++++.+..++++++++.+.+++
T Consensus 296 ~~~~~-----~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 296 PDAGG-----PADIVTDGENGLLVEPGDAEAFAAALAALL-ADPELRRRMAARARAEAERRSWEAFLDNLLEAY 363 (364)
T ss_pred cCCCC-----chhhhcCCcceEEcCCCCHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 98643 233455557787764 5777999999999 799999999999999998899999999998875
No 32
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.92 E-value=1.3e-22 Score=206.91 Aligned_cols=337 Identities=16% Similarity=0.148 Sum_probs=212.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
..|+|.+.|. |+...+..|+++|++++|+ +.+.++...+ ++ .......+.. ..... .
T Consensus 51 ~~iW~Ha~s~--Ge~~~~~~l~~~l~~~~~~-~~i~~t~~t~--~~--~~~~~~~~~~--------~~~~~--------~ 107 (425)
T PRK05749 51 PLIWFHAVSV--GETRAAIPLIRALRKRYPD-LPILVTTMTP--TG--SERAQALFGD--------DVEHR--------Y 107 (425)
T ss_pred CeEEEEeCCH--HHHHHHHHHHHHHHHhCCC-CcEEEeCCCc--cH--HHHHHHhcCC--------CceEE--------E
Confidence 3599999999 6999999999999998764 3444442211 11 1111110000 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-CC---------cccccCC
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-CH---------PTWFHPR 212 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~---------~~~~~~~ 212 (462)
++ ......+.+++++++||+|+++....+...+..++. .++|++.+.+.... .. ..+..+.
T Consensus 108 ~P-----~d~~~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~----~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~ 178 (425)
T PRK05749 108 LP-----YDLPGAVRRFLRFWRPKLVIIMETELWPNLIAELKR----RGIPLVLANARLSERSFKRYQKFKRFYRLLFKN 178 (425)
T ss_pred ec-----CCcHHHHHHHHHhhCCCEEEEEecchhHHHHHHHHH----CCCCEEEEeccCChhhHHHHHHHHHHHHHHHHh
Confidence 00 111235567799999999987643322211233343 48998866543321 00 1234566
Q ss_pred CcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhccc--CChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHH
Q 012492 213 VNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAV--ISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMAL 290 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~--~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l 290 (462)
+|.++++|+.+++.+.+.|++++ +.++||.-.+.+..+. .+...++++++ ++.+++ +++|.. .+....+++++
T Consensus 179 ~d~ii~~S~~~~~~l~~~g~~~~-i~vi~n~~~d~~~~~~~~~~~~~~r~~~~--~~~~vi-l~~~~~-~~~~~~ll~A~ 253 (425)
T PRK05749 179 IDLVLAQSEEDAERFLALGAKNE-VTVTGNLKFDIEVPPELAARAATLRRQLA--PNRPVW-IAASTH-EGEEELVLDAH 253 (425)
T ss_pred CCEEEECCHHHHHHHHHcCCCCC-cEecccccccCCCChhhHHHHHHHHHHhc--CCCcEE-EEeCCC-chHHHHHHHHH
Confidence 89999999999999998898877 8899985221111110 12235566676 345554 445443 33344444444
Q ss_pred HHhhhcccCCCCCceEEEEccCCH----HHHHHHhhccCC-------------CCeEEeccchhHHHHHHhcchh-eecC
Q 012492 291 GESLLDKETGRPIGQLIIICGRNR----TLASTLQSEEWK-------------IPVKVRGFETQMEKWMGACDCI-ITKA 352 (462)
Q Consensus 291 ~~~l~~~~~~~~~~~~lvv~G~~~----~l~~~~~~~~~~-------------~~V~~~g~~~~~~~l~~~aD~v-V~~s 352 (462)
+.+.+ ..|+++++ ++|++. ++.+.++++++. .+|.+.+..+++..+|+.||++ +.+|
T Consensus 254 -~~l~~---~~~~~~li-ivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S 328 (425)
T PRK05749 254 -RALLK---QFPNLLLI-LVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGS 328 (425)
T ss_pred -HHHHH---hCCCcEEE-EcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCC
Confidence 44433 24777755 456553 245555555542 2566666678999999999995 4333
Q ss_pred ----ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--
Q 012492 353 ----GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQ-- 426 (462)
Q Consensus 353 ----g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~-- 426 (462)
||.+++|||++|+|+|+.+..++... ..+.+.+.|.++.+.|++++++++.+++ +|++.+++|++++++++.
T Consensus 329 ~~e~~g~~~lEAma~G~PVI~g~~~~~~~e-~~~~~~~~g~~~~~~d~~~La~~l~~ll-~~~~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 329 LVKRGGHNPLEPAAFGVPVISGPHTFNFKE-IFERLLQAGAAIQVEDAEDLAKAVTYLL-TDPDARQAYGEAGVAFLKQN 406 (425)
T ss_pred cCCCCCCCHHHHHHhCCCEEECCCccCHHH-HHHHHHHCCCeEEECCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhC
Confidence 58899999999999999886544322 3445556788888889999999999999 799999999999999874
Q ss_pred CcHHHHHHHHHHHHHhc
Q 012492 427 PEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 427 ~~~~~~ia~~i~~l~~~ 443 (462)
..+++++.+.+.+++++
T Consensus 407 ~~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 407 QGALQRTLQLLEPYLPP 423 (425)
T ss_pred ccHHHHHHHHHHHhccc
Confidence 45667888888776554
No 33
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.92 E-value=2e-22 Score=204.50 Aligned_cols=340 Identities=12% Similarity=0.085 Sum_probs=202.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchh
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 140 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 140 (462)
..+||++++...+ |+..+...+|++|.++|| +|.++... .+++...... ... + ..+............
T Consensus 2 ~~~~~~~~~~~~~-~~~~R~~~~a~~L~~~G~---~V~ii~~~---~~~~~~~~~~-~~~-v---~~~~~~~~~~~~~~~ 69 (415)
T cd03816 2 KRKRVCVLVLGDI-GRSPRMQYHALSLAKHGW---KVDLVGYL---ETPPHDEILS-NPN-I---TIHPLPPPPQRLNKL 69 (415)
T ss_pred CccEEEEEEeccc-CCCHHHHHHHHHHHhcCc---eEEEEEec---CCCCCHHHhc-CCC-E---EEEECCCCccccccc
Confidence 4578999988874 777777889999999986 44444211 1111111000 000 0 000000000000000
Q ss_pred hHHHHH-HHHHHHHHH-HHHHHHhhCCCEEEECCcccc--hHHHHHHHHcCCCCCCeEEEEecCCCC---------CC--
Q 012492 141 HSCYLA-AMAAYYAKE-VEAGLMEYKPDIIISVHPLMQ--HIPLWVLKWQGLQKKVIFVTVITDLNT---------CH-- 205 (462)
Q Consensus 141 ~~~~~~-~~~~~~~~~-l~~~l~~~kPDvVi~~~~~~~--~~~~~~~~~~~~~~~iP~v~~~~d~~~---------~~-- 205 (462)
...... ......... +..++++.+||+|+++.+... ....+++++. .++|+|...|+... ..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~---~~~~~V~~~h~~~~~~~~~~~~~~~~~ 146 (415)
T cd03816 70 PFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLL---RRTKLIIDWHNYGYTILALKLGENHPL 146 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH---hCCeEEEEcCCchHHHHhcccCCCCHH
Confidence 010000 001111222 233467779999998764432 2112222322 37899877776421 00
Q ss_pred -------cccccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHH-----------------
Q 012492 206 -------PTWFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLE----------------- 261 (462)
Q Consensus 206 -------~~~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~----------------- 261 (462)
..|+++.+|+++++|+.+++.+.+.+++++++.+++|+....|... .....+..
T Consensus 147 ~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~~~~f~p~--~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (415)
T cd03816 147 VRLAKWYEKLFGRLADYNLCVTKAMKEDLQQFNNWKIRATVLYDRPPEQFRPL--PLEEKHELFLKLAKTFLTRELRIGA 224 (415)
T ss_pred HHHHHHHHHHHhhcCCEeeecCHHHHHHHHhhhccCCCeeecCCCCHHHceeC--cHHHHHHHHHhcccccccccccccc
Confidence 0134567899999999999999887888899999999754333221 11111111
Q ss_pred cCCCCCCcEEEEEeCCCCC-ccHHHHHHHHHHhhhccc---CCCCCceEEEEccCCH---HHHHHHhhccCCCCeEE-ec
Q 012492 262 LQMDPILPAVLLMGGGEGM-GPVKETAMALGESLLDKE---TGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKV-RG 333 (462)
Q Consensus 262 l~l~~~~~~iLv~gG~~~~-~~~~~~l~~l~~~l~~~~---~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~-~g 333 (462)
.++.++.+.++++.|+.+. +++..+++++ +.+.+.. ..+|+++++++ |.+. ++.+.++++++. ++.+ .|
T Consensus 225 ~~~~~~~~~vi~~~grl~~~K~~~~li~A~-~~l~~~~~~~~~~~~i~l~iv-G~G~~~~~l~~~~~~~~l~-~~~~~~g 301 (415)
T cd03816 225 VQLSEERPALLVSSTSWTPDEDFGILLDAL-VAYEKSAATGPKLPKLLCIIT-GKGPLKEKYLERIKELKLK-KVTIRTP 301 (415)
T ss_pred ceecCCCceEEEEeccccCCCCHHHHHHHH-HHHHHhhcccccCCCEEEEEE-ecCccHHHHHHHHHHcCCC-cEEEEcC
Confidence 1233344455555566654 5555555544 4543210 12367776554 5443 356667777775 5554 46
Q ss_pred cc--hhHHHHHHhcchheec----C---ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHH
Q 012492 334 FE--TQMEKWMGACDCIITK----A---GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVT 404 (462)
Q Consensus 334 ~~--~~~~~l~~~aD~vV~~----s---g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~ 404 (462)
++ +++.++|++||++|+. + .|++++|||+||+|+|+++.++ ..+.+.+.+.|+++.|+++++++|.
T Consensus 302 ~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~-----~~eiv~~~~~G~lv~d~~~la~~i~ 376 (415)
T cd03816 302 WLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKC-----IDELVKHGENGLVFGDSEELAEQLI 376 (415)
T ss_pred cCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCC-----HHHHhcCCCCEEEECCHHHHHHHHH
Confidence 75 7999999999998852 1 2788999999999999988642 2234445557888899999999999
Q ss_pred HHhcCC---HHHHHHHHHHHHhhcC
Q 012492 405 EWFSTK---TDELKRMSENALKLAQ 426 (462)
Q Consensus 405 ~ll~~d---~~~~~~m~~~a~~~~~ 426 (462)
+++ +| ++.+++|++++++..+
T Consensus 377 ~ll-~~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 377 DLL-SNFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred HHH-hcCCCHHHHHHHHHHHHHhhh
Confidence 999 67 9999999999999874
No 34
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.92 E-value=2.7e-22 Score=202.04 Aligned_cols=273 Identities=18% Similarity=0.163 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhh--CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC-----cc-------------cccC
Q 012492 152 YAKEVEAGLMEY--KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH-----PT-------------WFHP 211 (462)
Q Consensus 152 ~~~~l~~~l~~~--kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~-----~~-------------~~~~ 211 (462)
+...+.+.+++. +||+|+++..........+++. .++|+|...|+..... .. +..+
T Consensus 87 ~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (398)
T cd03800 87 FADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARR----LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLR 162 (398)
T ss_pred HHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhh----cCCceEEEeecccccCCcccccccccchhhhhhHHHHHHh
Confidence 344556677777 9999999876544433333333 4889887777643110 01 1234
Q ss_pred CCcEEEEcCHHHHHHHHHcC-CCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHH
Q 012492 212 RVNRCYCPSKEVAKRASYFG-LEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMAL 290 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~l~~~g-i~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l 290 (462)
.+|.++++|+...+.+.+.+ .+..++.+++|+++...+.+.......+++++.+++.++++++|+....++...+++++
T Consensus 163 ~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~ 242 (398)
T cd03800 163 AADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRILAVGRLDPRKGIDTLIRAY 242 (398)
T ss_pred hCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcEEEEEcccccccCHHHHHHHH
Confidence 68999999999988887654 34456999999998765543222222255566666666655555444445565555544
Q ss_pred HHhhhcccCCCCCceEEEEccCCHH--------HHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhh
Q 012492 291 GESLLDKETGRPIGQLIIICGRNRT--------LASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGT 356 (462)
Q Consensus 291 ~~~l~~~~~~~~~~~~lvv~G~~~~--------l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t 356 (462)
..+.+. .+++++++++|.... +.+..+.++...++.+.|++ +++..+|+.||+++.+|. |.+
T Consensus 243 -~~l~~~---~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~ 318 (398)
T cd03800 243 -AELPEL---RERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLT 318 (398)
T ss_pred -HHHHHh---CCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcH
Confidence 455432 457777666543321 12334556777899999997 589999999999998864 789
Q ss_pred HHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHH
Q 012492 357 IAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDI 433 (462)
Q Consensus 357 ~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~i 433 (462)
++|||++|+|+|+++..+ ..+.+.+.+.|++++ ++++++++|.+++ ++++.+++|++++++.+ +.++++.+
T Consensus 319 l~Ea~a~G~Pvi~s~~~~-----~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~-~~~~~~~~~~~~a~~~~~~~~s~~~~ 392 (398)
T cd03800 319 ALEAMACGLPVVATAVGG-----PRDIVVDGVTGLLVDPRDPEALAAALRRLL-TDPALRRRLSRAGLRRARARYTWERV 392 (398)
T ss_pred HHHHHhcCCCEEECCCCC-----HHHHccCCCCeEEeCCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999988643 223444455788775 6999999999999 79999999999999988 78999999
Q ss_pred HHHHH
Q 012492 434 VKDIH 438 (462)
Q Consensus 434 a~~i~ 438 (462)
++.++
T Consensus 393 ~~~~~ 397 (398)
T cd03800 393 AARLL 397 (398)
T ss_pred HHHHh
Confidence 98875
No 35
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.91 E-value=2.2e-22 Score=196.97 Aligned_cols=325 Identities=16% Similarity=0.196 Sum_probs=212.2
Q ss_pred eEEEEecCCC--chHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhh
Q 012492 64 NVLILMSDTG--GGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 141 (462)
Q Consensus 64 kIli~~~~~G--~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 141 (462)
||+|++.+.+ ||....+..++++|.+.|+ +|.+......... ........ ......... ....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~---~v~v~~~~~~~~~--~~~~~~~~-------~~~~~~~~~--~~~~- 65 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGH---EVTIISLDKGEPP--FYELDPKI-------KVIDLGDKR--DSKL- 65 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCC---eEEEEecCCCCCC--ccccCCcc-------ceeeccccc--ccch-
Confidence 6888886543 7999999999999998775 4444432211000 00000000 000000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCC-CeEEEEecCCCCCC---------cccccC
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKK-VIFVTVITDLNTCH---------PTWFHP 211 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~-iP~v~~~~d~~~~~---------~~~~~~ 211 (462)
.........+.+++++.+||+|+++++.... ...... .+ +|++.+.|+..... ..+..+
T Consensus 66 -----~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~--~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (348)
T cd03820 66 -----LARFKKLRRLRKLLKNNKPDVVISFLTSLLT--FLASLG----LKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYR 134 (348)
T ss_pred -----hccccchHHHHHhhcccCCCEEEEcCchHHH--HHHHHh----hccccEEEecCCCccchhhhhHHHHHHHHHHh
Confidence 0112334566778999999999999876211 122221 23 48877766543211 122356
Q ss_pred CCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHH
Q 012492 212 RVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALG 291 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~ 291 (462)
.+|.+++.|+... ......+..++.+++|+++....... .+.+.+.++.+|+....++...++..+
T Consensus 135 ~~d~ii~~s~~~~--~~~~~~~~~~~~vi~~~~~~~~~~~~-----------~~~~~~~i~~~g~~~~~K~~~~l~~~~- 200 (348)
T cd03820 135 RADAVVVLTEEDR--ALYYKKFNKNVVVIPNPLPFPPEEPS-----------SDLKSKRILAVGRLVPQKGFDLLIEAW- 200 (348)
T ss_pred cCCEEEEeCHHHH--HHhhccCCCCeEEecCCcChhhcccc-----------CCCCCcEEEEEEeeccccCHHHHHHHH-
Confidence 7899999999886 22334556789999999987654321 123455666666554555555555544
Q ss_pred HhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHhC
Q 012492 292 ESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIRG 364 (462)
Q Consensus 292 ~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G 364 (462)
+.+.+ ..++++++++ |.+. .+.+.+++++...+|.+.|+.+++..+|+.||++|.+|. |.+++|||++|
T Consensus 201 ~~l~~---~~~~~~l~i~-G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G 276 (348)
T cd03820 201 AKIAK---KHPDWKLRIV-GDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFG 276 (348)
T ss_pred HHHHh---cCCCeEEEEE-eCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcC
Confidence 55543 2467776554 5443 244556667788899999999999999999999998874 89999999999
Q ss_pred CCEEEecCCCCccccchHHHHHCC-ceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 012492 365 LPIILNDYIPGQEKGNVPYVVDNG-AGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIH 438 (462)
Q Consensus 365 ~PvI~~~~~~~~~~~n~~~l~~~G-~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~ 438 (462)
+|+|+++...+. ..+.+.+ .|++++ ++++++++|.+++ +|++.+++|++++++..+.++++++++.+.
T Consensus 277 ~Pvi~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~i~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 277 LPVISFDCPTGP-----SEIIEDGVNGLLVPNGDVEALAEALLRLM-EDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred CCEEEecCCCch-----HhhhccCcceEEeCCCCHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 999999865432 2355555 777765 5799999999999 799999999999999999999999998875
No 36
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.91 E-value=3.7e-22 Score=199.07 Aligned_cols=262 Identities=14% Similarity=0.127 Sum_probs=188.0
Q ss_pred HHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC-Cc--c-------------cccCCCcEE
Q 012492 153 AKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC-HP--T-------------WFHPRVNRC 216 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~-~~--~-------------~~~~~~d~~ 216 (462)
...+.+++++++||+||++++......+.+++. .++|+|...|+.... .. . ...+.+|.+
T Consensus 71 ~~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~----~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 146 (367)
T cd05844 71 APQLRRLLRRHRPDLVHAHFGFDGVYALPLARR----LGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALF 146 (367)
T ss_pred ccHHHHHHHhhCCCEEEeccCchHHHHHHHHHH----cCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEE
Confidence 344555789999999999876544433334443 479998877754311 11 0 112467999
Q ss_pred EEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhc
Q 012492 217 YCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLD 296 (462)
Q Consensus 217 i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~ 296 (462)
+++|+..++.+.+.|+++.++.+++|+++...+.+. . ...+.+.++++|+....++...+++++ ..+.+
T Consensus 147 i~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~-~---------~~~~~~~i~~~G~~~~~K~~~~li~a~-~~l~~ 215 (367)
T cd05844 147 IAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPA-T---------PARRPPRILFVGRFVEKKGPLLLLEAF-ARLAR 215 (367)
T ss_pred EECCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCC-C---------CCCCCcEEEEEEeeccccChHHHHHHH-HHHHH
Confidence 999999999998888888899999999987654431 0 112344555555444445555555544 44543
Q ss_pred ccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----------hhhHHHHH
Q 012492 297 KETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----------PGTIAEAL 361 (462)
Q Consensus 297 ~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----------~~t~~EAl 361 (462)
+.++++++ ++|.+. ++.+..+++++..+|.|.|++ +++.++|+.||++|.+|. |++++|||
T Consensus 216 ---~~~~~~l~-ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~ 291 (367)
T cd05844 216 ---RVPEVRLV-IIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQ 291 (367)
T ss_pred ---hCCCeEEE-EEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHH
Confidence 24677655 456554 244555666778899999998 689999999999998762 78999999
Q ss_pred HhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHHHH
Q 012492 362 IRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKDIH 438 (462)
Q Consensus 362 a~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~ 438 (462)
++|+|+|+++..+ +.+.+.+.+.|++++ ++++++++|.+++ +|++.+++|++++++.+ +.++|+.+++.+.
T Consensus 292 a~G~PvI~s~~~~-----~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~-~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~ 365 (367)
T cd05844 292 ASGVPVVATRHGG-----IPEAVEDGETGLLVPEGDVAALAAALGRLL-ADPDLRARMGAAGRRRVEERFDLRRQTAKLE 365 (367)
T ss_pred HcCCCEEEeCCCC-----chhheecCCeeEEECCCCHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 9999999998743 334455556777774 7899999999999 79999999999999887 5789999999886
Q ss_pred H
Q 012492 439 D 439 (462)
Q Consensus 439 ~ 439 (462)
+
T Consensus 366 ~ 366 (367)
T cd05844 366 A 366 (367)
T ss_pred c
Confidence 5
No 37
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.91 E-value=2.9e-22 Score=198.86 Aligned_cols=323 Identities=15% Similarity=0.061 Sum_probs=203.4
Q ss_pred eEEEEecC-CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 64 NVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 64 kIli~~~~-~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
||++++.+ .+||....+..++++|.+.|+ ++.+..... .. ......... .+..+..... ....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~---~v~~i~~~~----~~-~~~~~~~~~-------~~~~~~~~~~-~~~~ 64 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKI---QFDFLVTSK----EE-GDYDDEIEK-------LGGKIYYIPA-RKKN 64 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccce---EEEEEEeCC----CC-cchHHHHHH-------cCCeEEEecC-CCcc
Confidence 68888765 336999999999999997763 555442211 11 011010000 0000000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEE-EEecCCCCCCc------------ccc
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFV-TVITDLNTCHP------------TWF 209 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v-~~~~d~~~~~~------------~~~ 209 (462)
...+.+.+.+.+++.+||+|+++.+.........++. .+.|.+ ...|+...... .+.
T Consensus 65 ------~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (358)
T cd03812 65 ------PLKYFKKLYKLIKKNKYDIVHVHGSSASGFILLAAKK----AGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLI 134 (358)
T ss_pred ------HHHHHHHHHHHHhcCCCCEEEEeCcchhHHHHHHHhh----CCCCeEEEEeccccccccccchhhHHHHHHHHH
Confidence 1123345566788999999999887644443333333 245543 33443321110 112
Q ss_pred cCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHH
Q 012492 210 HPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMA 289 (462)
Q Consensus 210 ~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~ 289 (462)
...++.++++++...+.+... +++.++.+++|+++...+.........+++++..++.+.++++|+....+++..++.+
T Consensus 135 ~~~~~~~i~~s~~~~~~~~~~-~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a 213 (358)
T cd03812 135 NRLATDYLACSEEAGKWLFGK-VKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEI 213 (358)
T ss_pred HhcCCEEEEcCHHHHHHHHhC-CCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHH
Confidence 356789999999998888766 5678899999999876544322222225556666666665555554445555555554
Q ss_pred HHHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHH
Q 012492 290 LGESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALI 362 (462)
Q Consensus 290 l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla 362 (462)
+ ..+.+. .++++++++ |.+. .+.+.++++++..+|.+.|+.+++.++|+.||++|.+|. |++++|||+
T Consensus 214 ~-~~l~~~---~~~~~l~iv-G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma 288 (358)
T cd03812 214 F-AELLKK---NPNAKLLLV-GDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQA 288 (358)
T ss_pred H-HHHHHh---CCCeEEEEE-eCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHH
Confidence 4 555442 467776554 5443 355566677888999999999999999999999999874 899999999
Q ss_pred hCCCEEEecCCCCccccchHHHHHCCceeee-C-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 012492 363 RGLPIILNDYIPGQEKGNVPYVVDNGAGVFT-R-SPKETARIVTEWFSTKTDELKRMSENALKLA 425 (462)
Q Consensus 363 ~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~-~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~ 425 (462)
+|+|+|+++.++..+ .+.+ +.+++. + ++++++++|.+++ +||+.++.|...+....
T Consensus 289 ~G~PvI~s~~~~~~~-----~i~~-~~~~~~~~~~~~~~a~~i~~l~-~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 289 SGLPCILSDTITKEV-----DLTD-LVKFLSLDESPEIWAEEILKLK-SEDRRERSSESIKKKGL 346 (358)
T ss_pred hCCCEEEEcCCchhh-----hhcc-CccEEeCCCCHHHHHHHHHHHH-hCcchhhhhhhhhhccc
Confidence 999999998754322 2333 555444 3 4699999999999 79999988887765543
No 38
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.91 E-value=4.9e-22 Score=197.00 Aligned_cols=339 Identities=18% Similarity=0.203 Sum_probs=212.1
Q ss_pred eEEEEec---CCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchh
Q 012492 64 NVLILMS---DTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 140 (462)
Q Consensus 64 kIli~~~---~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 140 (462)
||++++. +.++|+...+.+++++|.+.|+ +|.+...... ...... . +.. . ..+.... ...
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~---~v~v~~~~~~--~~~~~~--~-~~~-~---~~~~~~~-----~~~ 63 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGH---EVYVVAPSYP--GAPEEE--E-VVV-V---RPFRVPT-----FKY 63 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCC---eEEEEeCCCC--CCCccc--c-ccc-c---ccccccc-----chh
Confidence 6788862 3346999999999999999875 4444322110 000000 0 000 0 0000000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHH-HHHHcCCCCCCeEEEEecCCCCC---------------
Q 012492 141 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLW-VLKWQGLQKKVIFVTVITDLNTC--------------- 204 (462)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~-~~~~~~~~~~iP~v~~~~d~~~~--------------- 204 (462)
.. ..........+.+.+++.+||+|+++.++....... +++. .++|++...|+....
T Consensus 64 ~~---~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 136 (374)
T cd03817 64 PD---FRLPLPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARK----LGIPVVATYHTMYEDYTHYVPLGRLLARAV 136 (374)
T ss_pred hh---hhccccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHH----cCCCEEEEecCCHHHHHHHHhcccchhHHH
Confidence 00 000112233445568899999999988765433222 2232 489998877764210
Q ss_pred ----CcccccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCC
Q 012492 205 ----HPTWFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGM 280 (462)
Q Consensus 205 ----~~~~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~ 280 (462)
...+..+.+|.+++.|+...+.+.+.+.+ .++.+++++++...+.. ..+...+++++++++.+.++++|+....
T Consensus 137 ~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 214 (374)
T cd03817 137 VRRKLSRRFYNRCDAVIAPSEKIADLLREYGVK-RPIEVIPTGIDLDRFEP-VDGDDERRKLGIPEDEPVLLYVGRLAKE 214 (374)
T ss_pred HHHHHHHHHhhhCCEEEeccHHHHHHHHhcCCC-CceEEcCCccchhccCc-cchhHHHHhcCCCCCCeEEEEEeeeecc
Confidence 00122356899999999988888777664 45899999998765543 2333446667776666555555443334
Q ss_pred ccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC--
Q 012492 281 GPVKETAMALGESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG-- 353 (462)
Q Consensus 281 ~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg-- 353 (462)
++...++..+ +.+.+. .++++++++ |.+. .+.+..++++...+|.+.|++ +++..+|+.||+++.++.
T Consensus 215 k~~~~l~~~~-~~~~~~---~~~~~l~i~-G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e 289 (374)
T cd03817 215 KNIDFLIRAF-ARLLKE---EPDVKLVIV-GDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTE 289 (374)
T ss_pred cCHHHHHHHH-HHHHHh---CCCeEEEEE-eCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccccc
Confidence 5555555544 444431 356776554 5443 244455556778899999998 689999999999998763
Q ss_pred --hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHH
Q 012492 354 --PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPK-ETARIVTEWFSTKTDELKRMSENALKLAQPEAV 430 (462)
Q Consensus 354 --~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~-~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~ 430 (462)
+.+++|||++|+|+|+++.+.. .+.+.+.+.|+++++.+ ++++++.+++ ++++.+++|++++++.+..+.
T Consensus 290 ~~~~~~~Ea~~~g~PvI~~~~~~~-----~~~i~~~~~g~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~~~~~- 362 (374)
T cd03817 290 TQGLVLLEAMAAGLPVVAVDAPGL-----PDLVADGENGFLFPPGDEALAEALLRLL-QDPELRRRLSKNAEESAEKFS- 362 (374)
T ss_pred CcChHHHHHHHcCCcEEEeCCCCh-----hhheecCceeEEeCCCCHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHH-
Confidence 7899999999999999986432 23344446777776433 8999999999 799999999999999887655
Q ss_pred HHHHHHHHHHHh
Q 012492 431 VDIVKDIHDLAA 442 (462)
Q Consensus 431 ~~ia~~i~~l~~ 442 (462)
.++.++++++
T Consensus 363 --~~~~~~~~~~ 372 (374)
T cd03817 363 --FAKKVEKLYE 372 (374)
T ss_pred --HHHHHHHHHh
Confidence 4455555443
No 39
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.91 E-value=5.8e-22 Score=195.13 Aligned_cols=343 Identities=15% Similarity=0.137 Sum_probs=223.2
Q ss_pred eEEEEecC---CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchh
Q 012492 64 NVLILMSD---TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 140 (462)
Q Consensus 64 kIli~~~~---~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 140 (462)
||++++.. .++|+......++++|.+.|+ +|.+...... ............ .... ... ...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~---~v~i~~~~~~-~~~~~~~~~~~~--------~~~~---~~~-~~~ 64 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGH---EVTVLTPGDG-GLPDEEEVGGIV--------VVRP---PPL-LRV 64 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCc---eEEEEecCCC-CCCceeeecCcc--------eecC---Ccc-ccc
Confidence 67888632 336999999999999998875 4444422111 000000000000 0000 000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc--------------
Q 012492 141 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP-------------- 206 (462)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~-------------- 206 (462)
............+.+.+++.+||+|+++++..........+. .++|++...|+......
T Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~ 137 (374)
T cd03801 65 ---RRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARL----LGIPLVLTVHGLEFGRPGNELGLLLKLARAL 137 (374)
T ss_pred ---chhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHh----cCCcEEEEeccchhhccccchhHHHHHHHHH
Confidence 001112334455667889999999999987765543223332 48999988887642111
Q ss_pred -ccccCCCcEEEEcCHHHHHHHHHcC-CCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHH
Q 012492 207 -TWFHPRVNRCYCPSKEVAKRASYFG-LEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVK 284 (462)
Q Consensus 207 -~~~~~~~d~~i~~s~~~~~~l~~~g-i~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~ 284 (462)
.+..+.+|.+++.|+...+.+.+.+ .+..++.+++++++....... . ...+.....+.+.+.++++|+....++..
T Consensus 138 ~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~~~g~~~~~k~~~ 215 (374)
T cd03801 138 ERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPA-P-RAARRRLGIPEDEPVILFVGRLVPRKGVD 215 (374)
T ss_pred HHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCcc-c-hHHHhhcCCcCCCeEEEEecchhhhcCHH
Confidence 1234568999999999999988764 333689999999987655431 1 33334444455556666666555555666
Q ss_pred HHHHHHHHhhhcccCCCCCceEEEEccCCHH---HHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecC----Chh
Q 012492 285 ETAMALGESLLDKETGRPIGQLIIICGRNRT---LASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKA----GPG 355 (462)
Q Consensus 285 ~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~---l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~s----g~~ 355 (462)
.+++.+ ..+.+. .+++++++ +|.+.. +.+.+++++...+|.+.|++ +++.++|+.||+++.++ .++
T Consensus 216 ~~i~~~-~~~~~~---~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~ 290 (374)
T cd03801 216 LLLEAL-AKLRKE---YPDVRLVI-VGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGL 290 (374)
T ss_pred HHHHHH-HHHhhh---cCCeEEEE-EeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccc
Confidence 666544 444431 35677654 455442 33444456778899999999 89999999999999875 388
Q ss_pred hHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhcCCcHHHH
Q 012492 356 TIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENAL-KLAQPEAVVD 432 (462)
Q Consensus 356 t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~-~~~~~~~~~~ 432 (462)
+++|||++|+|+|+++.++ ..+.+.+.+.|+++. +++++++++.+++ +|++.+++|+++++ ...+.+++++
T Consensus 291 ~~~Ea~~~g~pvI~~~~~~-----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (374)
T cd03801 291 VLLEAMAAGLPVVASDVGG-----IPEVVEDGETGLLVPPGDPEALAEAILRLL-DDPELRRRLGEAARERVAERFSWDR 364 (374)
T ss_pred hHHHHHHcCCcEEEeCCCC-----hhHHhcCCcceEEeCCCCHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999998632 223344456677765 4699999999999 79999999999998 4567889999
Q ss_pred HHHHHHHHHh
Q 012492 433 IVKDIHDLAA 442 (462)
Q Consensus 433 ia~~i~~l~~ 442 (462)
+++.+.++++
T Consensus 365 ~~~~~~~~~~ 374 (374)
T cd03801 365 VAARTEEVYY 374 (374)
T ss_pred HHHHHHHhhC
Confidence 9999988763
No 40
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.91 E-value=5.7e-22 Score=196.61 Aligned_cols=335 Identities=14% Similarity=0.095 Sum_probs=210.5
Q ss_pred eEEEEecC--CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhh
Q 012492 64 NVLILMSD--TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 141 (462)
Q Consensus 64 kIli~~~~--~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 141 (462)
||+|++.. .++|..+.+..|+++|.+.|+. +.++...... .......... .. .... ..
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~-v~v~~~~~~~--~~~~~~~~~~---------~~----~~~~---~~- 60 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPD-VLVVSVAALY--PSLLYGGEQE---------VV----RVIV---LD- 60 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCe-EEEEEeeccc--CcccCCCccc---------ce----eeee---cC-
Confidence 68888743 2369999999999999999863 2333221110 0100000000 00 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcc--cchHHHHHHHHcCCCCCCeEEEEecCCCCCCcc--------cccC
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPL--MQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPT--------WFHP 211 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~--~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~--------~~~~ 211 (462)
.......+.+.+++.+||+||+++.. ........+.......++|+|.+.|+....... .+.+
T Consensus 61 -------~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~ 133 (366)
T cd03822 61 -------NPLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLR 133 (366)
T ss_pred -------CchhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHh
Confidence 01122344567889999999987621 111111111110011489999999886211111 1245
Q ss_pred CCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHH
Q 012492 212 RVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALG 291 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~ 291 (462)
.+|.++++|....+.+...+. .+++.+++++++...... ... . ++...+.+.++++++|+....++...++.++
T Consensus 134 ~~d~ii~~s~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~--~~~-~-~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~- 207 (366)
T cd03822 134 RADAVIVMSSELLRALLLRAY-PEKIAVIPHGVPDPPAEP--PES-L-KALGGLDGRPVLLTFGLLRPYKGLELLLEAL- 207 (366)
T ss_pred cCCEEEEeeHHHHHHHHhhcC-CCcEEEeCCCCcCcccCC--chh-h-HhhcCCCCCeEEEEEeeccCCCCHHHHHHHH-
Confidence 689999996444444443332 468999999998655432 111 1 2333445566666666555556666666555
Q ss_pred HhhhcccCCCCCceEEEEccCCH-HH---HH----HHhhccCCCCeEEecc-c--hhHHHHHHhcchheecCC------h
Q 012492 292 ESLLDKETGRPIGQLIIICGRNR-TL---AS----TLQSEEWKIPVKVRGF-E--TQMEKWMGACDCIITKAG------P 354 (462)
Q Consensus 292 ~~l~~~~~~~~~~~~lvv~G~~~-~l---~~----~~~~~~~~~~V~~~g~-~--~~~~~l~~~aD~vV~~sg------~ 354 (462)
+.+.+. .++++++++ |.+. .. .. .++++++..+|.+.|. + +++.++|+.||+++.++. +
T Consensus 208 ~~~~~~---~~~~~l~i~-G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~ 283 (366)
T cd03822 208 PLLVAK---HPDVRLLVA-GETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQS 283 (366)
T ss_pred HHHHhh---CCCeEEEEe-ccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccc
Confidence 444431 467776654 5432 11 11 2667788899999976 4 689999999999997652 6
Q ss_pred hhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeee--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHH
Q 012492 355 GTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFT--RSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVD 432 (462)
Q Consensus 355 ~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~--~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ 432 (462)
++++|||++|+|+|+++.++ . ..+.+.+.|+++ .+++++++++.+++ +|++.+++|+++++++++.+++++
T Consensus 284 ~~~~Ea~a~G~PvI~~~~~~-~-----~~i~~~~~g~~~~~~d~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~s~~~ 356 (366)
T cd03822 284 GVLAYAIGFGKPVISTPVGH-A-----EEVLDGGTGLLVPPGDPAALAEAIRRLL-ADPELAQALRARAREYARAMSWER 356 (366)
T ss_pred hHHHHHHHcCCCEEecCCCC-h-----heeeeCCCcEEEcCCCHHHHHHHHHHHH-cChHHHHHHHHHHHHHHhhCCHHH
Confidence 78999999999999998754 2 234455667666 46899999999999 799999999999999998899999
Q ss_pred HHHHHHHHHh
Q 012492 433 IVKDIHDLAA 442 (462)
Q Consensus 433 ia~~i~~l~~ 442 (462)
+++.+.++++
T Consensus 357 ~~~~~~~~~~ 366 (366)
T cd03822 357 VAERYLRLLA 366 (366)
T ss_pred HHHHHHHHhC
Confidence 9999998763
No 41
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.91 E-value=7.3e-22 Score=203.23 Aligned_cols=275 Identities=15% Similarity=0.094 Sum_probs=179.6
Q ss_pred HHHHHHHh--hCCCEEEECCcccchHHHHHHHHc-CCCCCCeEEEEecCCCCC--Cc-----------------c--c--
Q 012492 155 EVEAGLME--YKPDIIISVHPLMQHIPLWVLKWQ-GLQKKVIFVTVITDLNTC--HP-----------------T--W-- 208 (462)
Q Consensus 155 ~l~~~l~~--~kPDvVi~~~~~~~~~~~~~~~~~-~~~~~iP~v~~~~d~~~~--~~-----------------~--~-- 208 (462)
.+.+++++ ++||+||++....+.++..+.+.. ....++|+|..+|..... .+ . +
T Consensus 107 ~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
T PRK00654 107 AAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYG 186 (466)
T ss_pred HHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCC
Confidence 33444444 599999999754444333333220 001278999888865310 00 0 0
Q ss_pred -------ccCCCcEEEEcCHHHHHHHHHc----------CCCCCcEEEcCCCCChhhhcccCC-----------------
Q 012492 209 -------FHPRVNRCYCPSKEVAKRASYF----------GLEVSQIRVFGLPIRPSFVRAVIS----------------- 254 (462)
Q Consensus 209 -------~~~~~d~~i~~s~~~~~~l~~~----------gi~~~~i~v~g~pv~~~~~~~~~~----------------- 254 (462)
....+|.++++|+..++.+... +.+++++.+++|+++.+.+.+..+
T Consensus 187 ~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~ 266 (466)
T PRK00654 187 QISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAE 266 (466)
T ss_pred cccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHH
Confidence 1245789999999988887642 124578999999999876554211
Q ss_pred -hHHHHHHcCCCC-CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH-HHHHHHhhc--cCCCCe
Q 012492 255 -KDNLRLELQMDP-ILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR-TLASTLQSE--EWKIPV 329 (462)
Q Consensus 255 -~~~~r~~l~l~~-~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-~l~~~~~~~--~~~~~V 329 (462)
+..+++++|+++ +.++++++|+....|++..+++++ +.+.+ .+++++++ |.+. .+.+.++++ ....++
T Consensus 267 ~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~-~~l~~-----~~~~lviv-G~g~~~~~~~l~~l~~~~~~~v 339 (466)
T PRK00654 267 NKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEAL-PELLE-----QGGQLVLL-GTGDPELEEAFRALAARYPGKV 339 (466)
T ss_pred HHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHH-HHHHh-----cCCEEEEE-ecCcHHHHHHHHHHHHHCCCcE
Confidence 346788899975 566666666555556666666555 44433 25676655 5442 233333322 123456
Q ss_pred E-Eeccchh-HHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHC------CceeeeC--C
Q 012492 330 K-VRGFETQ-MEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN------GAGVFTR--S 395 (462)
Q Consensus 330 ~-~~g~~~~-~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~------G~g~~~~--~ 395 (462)
. +.|+.++ +..+|+.||++|.+|- |.+++|||++|+|+|+++.++-.+. +.+. +.|++++ +
T Consensus 340 ~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~-----v~~~~~~~~~~~G~lv~~~d 414 (466)
T PRK00654 340 GVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADT-----VIDYNPEDGEATGFVFDDFN 414 (466)
T ss_pred EEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccce-----eecCCCCCCCCceEEeCCCC
Confidence 5 4677644 5689999999999873 8999999999999999987543221 2222 5677764 7
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 396 PKETARIVTEWFS--TKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 396 ~~~la~~i~~ll~--~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
+++++++|.+++. .+++.+++|++++.+ ..++|+++++.++++.++
T Consensus 415 ~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 415 AEDLLRALRRALELYRQPPLWRALQRQAMA--QDFSWDKSAEEYLELYRR 462 (466)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhc--cCCChHHHHHHHHHHHHH
Confidence 8999999998872 267778889888753 689999999999998764
No 42
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.91 E-value=1.8e-21 Score=191.34 Aligned_cols=333 Identities=14% Similarity=0.112 Sum_probs=211.5
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhHH
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSC 143 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~ 143 (462)
||++++... +|+......++++|.+.|+ ++.+........ ..... .. + ..+...........
T Consensus 1 kIl~i~~~~-~g~~~~~~~l~~~L~~~g~---~v~~~~~~~~~~----~~~~~-~~--~---~~~~~~~~~~~~~~---- 62 (359)
T cd03808 1 KILHIVTVD-GGLYSFRLPLIKALRAAGY---EVHVVAPPGDEL----EELEA-LG--V---KVIPIPLDRRGINP---- 62 (359)
T ss_pred CeeEEEecc-hhHHHHHHHHHHHHHhcCC---eeEEEecCCCcc----ccccc-CC--c---eEEeccccccccCh----
Confidence 689998885 5999999999999988875 334332111100 00000 00 0 00000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc-------------cccc
Q 012492 144 YLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP-------------TWFH 210 (462)
Q Consensus 144 ~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~-------------~~~~ 210 (462)
.........+.+.+++.+||+|+++...........++.. ...+++...|+...... .+..
T Consensus 63 ---~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (359)
T cd03808 63 ---FKDLKALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLA---GVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLAL 136 (359)
T ss_pred ---HhHHHHHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHc---CCCCEEEEecCcchhhccchhHHHHHHHHHHHHH
Confidence 0112334466788999999999998765443322333322 24566666665431110 1234
Q ss_pred CCCcEEEEcCHHHHHHHHHcCCC--CCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHH
Q 012492 211 PRVNRCYCPSKEVAKRASYFGLE--VSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAM 288 (462)
Q Consensus 211 ~~~d~~i~~s~~~~~~l~~~gi~--~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~ 288 (462)
+.+|.+++.|+...+.+.+.+.. ..++.+.+++++.......... .+++.+.++++|+....++...+++
T Consensus 137 ~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~G~~~~~k~~~~li~ 208 (359)
T cd03808 137 RFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP--------IPEDDPVFLFVARLLKDKGIDELLE 208 (359)
T ss_pred hhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc--------cCCCCcEEEEEeccccccCHHHHHH
Confidence 56799999999999998877654 3567778888877655431110 1234455555555444555555554
Q ss_pred HHHHhhhcccCCCCCceEEEEccCCHH--HHHH-HhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHH
Q 012492 289 ALGESLLDKETGRPIGQLIIICGRNRT--LAST-LQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEAL 361 (462)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~lvv~G~~~~--l~~~-~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAl 361 (462)
.+ +.+.+ ..++++++++++.... .... +.+.+...+|.+.|+.+++.++|+.||+++.++. |++++|||
T Consensus 209 ~~-~~l~~---~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~ 284 (359)
T cd03808 209 AA-RILKA---KGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAM 284 (359)
T ss_pred HH-HHHHh---cCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHH
Confidence 44 55543 2467776654433322 1121 4555667899999999999999999999998874 89999999
Q ss_pred HhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcHHHHHHHHHH
Q 012492 362 IRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKL-AQPEAVVDIVKDIH 438 (462)
Q Consensus 362 a~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~-~~~~~~~~ia~~i~ 438 (462)
++|+|+|+++.++. .+.+.+.+.|++++ +++++++++.+++ .|++.+++|++++++. .+.++++.+++.+.
T Consensus 285 ~~G~Pvi~s~~~~~-----~~~i~~~~~g~~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 285 AMGRPVIATDVPGC-----REAVIDGVNGFLVPPGDAEALADAIERLI-EDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HcCCCEEEecCCCc-----hhhhhcCcceEEECCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999999986432 23444455677764 6899999999999 7999999999999988 67899999998775
No 43
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.90 E-value=8.2e-21 Score=188.03 Aligned_cols=328 Identities=12% Similarity=0.040 Sum_probs=212.6
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhHH
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSC 143 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~ 143 (462)
||++++.....|.......++++|.++|+ +|.+....+......... +..... . . ...
T Consensus 1 ki~~~~~~~~~~~~~~~~~~~~~L~~~g~---~v~v~~~~~~~~~~~~~~----~~~~~~--~---~-------~~~--- 58 (355)
T cd03799 1 KIAYLVKEFPRLSETFILREILALEAAGH---EVEIFSLRPPEDTLVHPE----DRAELA--R---T-------RYL--- 58 (355)
T ss_pred CEEEECCCCCCcchHHHHHHHHHHHhCCC---eEEEEEecCccccccccc----cccccc--c---h-------HHH---
Confidence 69999988766788888999999999885 444433221111100000 000000 0 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc------ccccCCCcEEE
Q 012492 144 YLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP------TWFHPRVNRCY 217 (462)
Q Consensus 144 ~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~------~~~~~~~d~~i 217 (462)
...+........+.+.+++.+||+|+++.+..........+.. .++|++...|....... .+..+.+|.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 135 (355)
T cd03799 59 ARSLALLAQALVLARELRRLGIDHIHAHFGTTPATVAMLASRL---GGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVV 135 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHHh---cCCCEEEEEecccccccCchHHHHHHHhhCCEEE
Confidence 0011122344456677889999999998865433322333322 36888877764431111 12345689999
Q ss_pred EcCHHHHHHHHHc-CCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhc
Q 012492 218 CPSKEVAKRASYF-GLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLD 296 (462)
Q Consensus 218 ~~s~~~~~~l~~~-gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~ 296 (462)
+.|+..++.+.+. +.+..++.+++|+++...+.... ...+.+...++.+|+....++...++..+ +.+.+
T Consensus 136 ~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~--------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~-~~l~~ 206 (355)
T cd03799 136 AISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRP--------PPPPGEPLRILSVGRLVEKKGLDYLLEAL-ALLKD 206 (355)
T ss_pred ECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCcc--------ccccCCCeEEEEEeeeccccCHHHHHHHH-HHHhh
Confidence 9999999998876 67778999999999876654311 01123344455555444445555555544 45543
Q ss_pred ccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecC----------ChhhHHHHH
Q 012492 297 KETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKA----------GPGTIAEAL 361 (462)
Q Consensus 297 ~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~s----------g~~t~~EAl 361 (462)
. .+++++++ +|.+. .+.+.+++++...+|.+.|+. +++..+|+.||++++++ .|++++|||
T Consensus 207 ~---~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~ 282 (355)
T cd03799 207 R---GIDFRLDI-VGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAM 282 (355)
T ss_pred c---CCCeEEEE-EECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHH
Confidence 2 35677655 45443 345556666778899999998 78999999999999754 378999999
Q ss_pred HhCCCEEEecCCCCccccchHHHHHCC-ceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHH
Q 012492 362 IRGLPIILNDYIPGQEKGNVPYVVDNG-AGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKD 436 (462)
Q Consensus 362 a~G~PvI~~~~~~~~~~~n~~~l~~~G-~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~ 436 (462)
++|+|+|+++.+... .+.+.+ .|+++. ++++++++|.+++ ++++.+.+|++++++.+ ..++++..++.
T Consensus 283 a~G~Pvi~~~~~~~~------~~i~~~~~g~~~~~~~~~~l~~~i~~~~-~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 283 AMGLPVISTDVSGIP------ELVEDGETGLLVPPGDPEALADAIERLL-DDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred HcCCCEEecCCCCcc------hhhhCCCceEEeCCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999999998864322 234444 777775 7899999999999 79999999999999876 46888887764
No 44
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.90 E-value=7.5e-22 Score=198.84 Aligned_cols=265 Identities=15% Similarity=0.029 Sum_probs=173.0
Q ss_pred HHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC---CCc---------------ccccCCCcEEEEcC
Q 012492 159 GLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT---CHP---------------TWFHPRVNRCYCPS 220 (462)
Q Consensus 159 ~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~---~~~---------------~~~~~~~d~~i~~s 220 (462)
..+..+||+|+++..... . .+.+.. .+.|+|.+.|.... ... .|..+.+|.++++|
T Consensus 89 ~~~~~~~Dvi~~~~~~~~-~--~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s 162 (392)
T cd03805 89 LLPDEKYDVFIVDQVSAC-V--PLLKLF---SPSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMADKIVVNS 162 (392)
T ss_pred hcccCCCCEEEEcCcchH-H--HHHHHh---cCCcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCceEEEEcC
Confidence 356779999998764332 2 222322 24787766652210 000 12356789999999
Q ss_pred HHHHHHHHHc-C-CCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhccc
Q 012492 221 KEVAKRASYF-G-LEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKE 298 (462)
Q Consensus 221 ~~~~~~l~~~-g-i~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~ 298 (462)
+..++.+.+. + .+..++.+++|+++.+.+.+... +..++....+++.++++.+|.....++...+++++ +.+.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~-~~l~~~~ 240 (392)
T cd03805 163 NFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSE-DPDPGLLIPKSGKKTFLSINRFERKKNIALAIEAF-AILKDKL 240 (392)
T ss_pred hhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccc-cccccccccCCCceEEEEEeeecccCChHHHHHHH-HHHHhhc
Confidence 9998877653 3 33334558899998776543211 11222334445555555555444445565555544 5554421
Q ss_pred CCCCCceEEEEccCC----------HHHHHHHhh-ccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHH
Q 012492 299 TGRPIGQLIIICGRN----------RTLASTLQS-EEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEAL 361 (462)
Q Consensus 299 ~~~~~~~~lvv~G~~----------~~l~~~~~~-~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAl 361 (462)
...++++++++++.. .++.+.+++ +++.++|.|.|++ +++..+|+.||+++.+|. |.+++|||
T Consensus 241 ~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAm 320 (392)
T cd03805 241 AEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAM 320 (392)
T ss_pred ccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHH
Confidence 001577766654332 234555666 6788999999998 567899999999998763 88999999
Q ss_pred HhCCCEEEecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHHH
Q 012492 362 IRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKDI 437 (462)
Q Consensus 362 a~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i 437 (462)
++|+|+|+++.++.. +.+.+.+.|++++ ++++++++|.+++ ++++.+++|++++++.+ +.++++.+++.+
T Consensus 321 a~G~PvI~s~~~~~~-----e~i~~~~~g~~~~~~~~~~a~~i~~l~-~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 321 YAGKPVIACNSGGPL-----ETVVDGETGFLCEPTPEEFAEAMLKLA-NDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HcCCCEEEECCCCcH-----HHhccCCceEEeCCCHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 999999999864322 2344445677664 7899999999999 79999999999999876 678999888753
No 45
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.90 E-value=2.6e-21 Score=194.03 Aligned_cols=260 Identities=12% Similarity=0.111 Sum_probs=178.9
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCC
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGL 242 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~ 242 (462)
.++|+|+++...... ..+.+. ..+.|+|...|+.. .+ ......+.++++|+..++.+.+ +++..++.+++|
T Consensus 98 ~~~~vi~v~~~~~~~--~~~~~~---~~~~~~v~~~h~~~--~~-~~~~~~~~ii~~S~~~~~~~~~-~~~~~~i~vIpn 168 (380)
T PRK15484 98 TKDSVIVIHNSMKLY--RQIRER---APQAKLVMHMHNAF--EP-ELLDKNAKIIVPSQFLKKFYEE-RLPNADISIVPN 168 (380)
T ss_pred CCCcEEEEeCcHHhH--HHHHhh---CCCCCEEEEEeccc--Ch-hHhccCCEEEEcCHHHHHHHHh-hCCCCCEEEecC
Confidence 568998887644211 122222 14678887666542 11 1234678999999999877765 356678999999
Q ss_pred CCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCC-------HH
Q 012492 243 PIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRN-------RT 315 (462)
Q Consensus 243 pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~-------~~ 315 (462)
+++...+.+ ......+++++++++.++++++|+....+++..+++++ +.+.+ ..|+++++++++.. ..
T Consensus 169 gvd~~~~~~-~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~-~~l~~---~~p~~~lvivG~g~~~~~~~~~~ 243 (380)
T PRK15484 169 GFCLETYQS-NPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAF-EKLAT---AHSNLKLVVVGDPTASSKGEKAA 243 (380)
T ss_pred CCCHHHcCC-cchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHH-HHHHH---hCCCeEEEEEeCCccccccchhH
Confidence 998765543 23455677888876666555554444455666666555 44543 25788766554321 11
Q ss_pred HHHHHhhc--cCCCCeEEeccc--hhHHHHHHhcchheecCC-----hhhHHHHHHhCCCEEEecCCCCccccchHHHHH
Q 012492 316 LASTLQSE--EWKIPVKVRGFE--TQMEKWMGACDCIITKAG-----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD 386 (462)
Q Consensus 316 l~~~~~~~--~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg-----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~ 386 (462)
+.+.++++ .+..++.|.|++ +++.++|+.||++|.+|. +++++|||++|+|+|+++.++ ..+.+.+
T Consensus 244 ~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg-----~~Eiv~~ 318 (380)
T PRK15484 244 YQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG-----ITEFVLE 318 (380)
T ss_pred HHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC-----cHhhccc
Confidence 23333322 344689999997 589999999999998873 789999999999999998643 2233444
Q ss_pred CCceeee---CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHhc
Q 012492 387 NGAGVFT---RSPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 387 ~G~g~~~---~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~l~~~ 443 (462)
...|+.+ .++++++++|.+++ +|++. .+|++++++.+ +.++|+.+++.+++++++
T Consensus 319 ~~~G~~l~~~~d~~~la~~I~~ll-~d~~~-~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 319 GITGYHLAEPMTSDSIISDINRTL-ADPEL-TQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCceEEEeCCCCHHHHHHHHHHHH-cCHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4467633 37899999999999 78875 67999998765 689999999999998864
No 46
>PLN02949 transferase, transferring glycosyl groups
Probab=99.90 E-value=6.4e-21 Score=194.26 Aligned_cols=360 Identities=13% Similarity=0.055 Sum_probs=216.4
Q ss_pred CCCCCCeEEEEec--CCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchh-hHHHHH-HHHhh------hHH
Q 012492 58 GAERTKNVLILMS--DTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLND-MERSYK-FMVKH------VQL 127 (462)
Q Consensus 58 ~~~~~~kIli~~~--~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~-~~~~y~-~~~~~------~~l 127 (462)
+.+++++|+|+.+ +.|||-++.....+.+|++.+++. .+.+-+. +..+.. .. +.+.-. +-++. +.+
T Consensus 29 ~~~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~-~v~iyt~--~~d~~~-~~~l~~~~~~~~i~~~~~~~~v~l 104 (463)
T PLN02949 29 RRSRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDL-DCVIYTG--DHDASP-DSLAARARDRFGVELLSPPKVVHL 104 (463)
T ss_pred ccCCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCC-eEEEEcC--CCCCCH-HHHHHHHHhhcceecCCCceEEEe
Confidence 4456779999985 467799999999999999998753 3332210 000000 11 000000 00000 000
Q ss_pred -HHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC--
Q 012492 128 -WKVAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC-- 204 (462)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~-- 204 (462)
..........+.+ ++... +........+.+.+..||+++-+.++...+| +++. .+.|++.++|-....
T Consensus 105 ~~~~~~~~~~~~~~-t~~~~--~~~~~~l~~~~~~~~~p~v~vDt~~~~~~~p--l~~~----~~~~v~~yvH~p~~~~d 175 (463)
T PLN02949 105 RKRKWIEEETYPRF-TMIGQ--SLGSVYLAWEALCKFTPLYFFDTSGYAFTYP--LARL----FGCKVVCYTHYPTISSD 175 (463)
T ss_pred ccccccccccCCce-ehHHH--HHHHHHHHHHHHHhcCCCEEEeCCCcccHHH--HHHh----cCCcEEEEEeCCcchHH
Confidence 0000000000011 11111 1111112223344568887776666554443 3443 368999888832100
Q ss_pred -------------------Ccc------------------cccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChh
Q 012492 205 -------------------HPT------------------WFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPS 247 (462)
Q Consensus 205 -------------------~~~------------------~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~ 247 (462)
... +....+|.++++|+.+++.+.+....++++.++++|++..
T Consensus 176 m~~~v~~~~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~ 255 (463)
T PLN02949 176 MISRVRDRSSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTS 255 (463)
T ss_pred HHHHHhhcccccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHH
Confidence 000 1125679999999999988877533345788899988754
Q ss_pred hhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhccc-CCCCCceEEEEccCC----H----HHHH
Q 012492 248 FVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKE-TGRPIGQLIIICGRN----R----TLAS 318 (462)
Q Consensus 248 ~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~~lvv~G~~----~----~l~~ 318 (462)
.+.. ...+ -+++.+.++.+|.....|+...+++++.+ +.++. ...+++++++++|.. . ++++
T Consensus 256 ~~~~-~~~~-------~~~~~~~il~vGR~~~~Kg~~llI~A~~~-l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~ 326 (463)
T PLN02949 256 GLQA-LPLE-------RSEDPPYIISVAQFRPEKAHALQLEAFAL-ALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKD 326 (463)
T ss_pred Hccc-CCcc-------ccCCCCEEEEEEeeeccCCHHHHHHHHHH-HHHhccccCCCcEEEEEeCCCCcccHHHHHHHHH
Confidence 3221 0100 11234556666554455666666665543 32211 113577766554421 1 2555
Q ss_pred HHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHH--CC-c
Q 012492 319 TLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD--NG-A 389 (462)
Q Consensus 319 ~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~--~G-~ 389 (462)
.++++++.++|.|.|++ +++.++|+.||+++.++. |.+++|||++|+|+|+++.++...+ .+.+ .| .
T Consensus 327 la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~e----IV~~~~~g~t 402 (463)
T PLN02949 327 RAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMD----IVLDEDGQQT 402 (463)
T ss_pred HHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcce----eeecCCCCcc
Confidence 66677888999999998 789999999999998763 8999999999999999987542111 1111 13 5
Q ss_pred eeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 390 GVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 390 g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
|++++++++++++|.++++++++.+++|++++++.+++++++++++.+++.+.+
T Consensus 403 G~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 403 GFLATTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKDAIRP 456 (463)
T ss_pred cccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 777889999999999999446888999999999999899999999999887753
No 47
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.90 E-value=8e-22 Score=196.73 Aligned_cols=268 Identities=16% Similarity=0.104 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHhhCCCEEEECCcccchHH-HHHHHHcCCCCCCeEEEEecCCCC---CC-----cccccCCCcEEEEcC
Q 012492 150 AYYAKEVEAGLMEYKPDIIISVHPLMQHIP-LWVLKWQGLQKKVIFVTVITDLNT---CH-----PTWFHPRVNRCYCPS 220 (462)
Q Consensus 150 ~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~-~~~~~~~~~~~~iP~v~~~~d~~~---~~-----~~~~~~~~d~~i~~s 220 (462)
.....++.+.+++++||+|++++......+ ..+++. .++|++++.+...+ .. ..+..+.+|.+++++
T Consensus 74 ~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~----~~iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s 149 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFK----LGIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPT 149 (363)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH----cCCCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCC
Confidence 344567778899999999999875433332 233443 48999876543211 01 112345679999999
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCCChhhhc-ccCCh-HHHHHHcCCCCCCcEEEEEeCCCCC----ccHHHHHHHHHHhh
Q 012492 221 KEVAKRASYFGLEVSQIRVFGLPIRPSFVR-AVISK-DNLRLELQMDPILPAVLLMGGGEGM----GPVKETAMALGESL 294 (462)
Q Consensus 221 ~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~-~~~~~-~~~r~~l~l~~~~~~iLv~gG~~~~----~~~~~~l~~l~~~l 294 (462)
+..++.+.+.|+++++|.++|||+.+.+.. ....+ ...++.++++ +++++++++|+... +.+..++.++ +.+
T Consensus 150 ~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~vlv~~~r~~~~~~~k~~~~l~~al-~~l 227 (363)
T cd03786 150 EEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLL-PKKYILVTLHRVENVDDGEQLEEILEAL-AEL 227 (363)
T ss_pred HHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccC-CCCEEEEEeCCccccCChHHHHHHHHHH-HHH
Confidence 999999999999999999999997544322 11111 2234567775 45667777777653 3344455444 444
Q ss_pred hcccCCCCCceEEEEccCC--HHHHHHHhhccC-CCCeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEEE
Q 012492 295 LDKETGRPIGQLIIICGRN--RTLASTLQSEEW-KIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPIIL 369 (462)
Q Consensus 295 ~~~~~~~~~~~~lvv~G~~--~~l~~~~~~~~~-~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~ 369 (462)
.+ .++.+++..+.. ..+++.+++++. .++|++.|+. +++..+|+.||++|++||+ ++.||+++|+|+|+
T Consensus 228 ~~-----~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sgg-i~~Ea~~~g~PvI~ 301 (363)
T cd03786 228 AE-----EDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSGG-IQEEASFLGVPVLN 301 (363)
T ss_pred Hh-----cCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCcc-HHhhhhhcCCCEEe
Confidence 32 134444333222 235555555554 5789998754 7899999999999999994 57899999999999
Q ss_pred ecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 012492 370 NDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDI 437 (462)
Q Consensus 370 ~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i 437 (462)
++... ....+.+.|.++.+. +++++++++.+++ +++..++.|. ...+.++.++++|++.+
T Consensus 302 ~~~~~-----~~~~~~~~g~~~~~~~~~~~i~~~i~~ll-~~~~~~~~~~--~~~~~~~~a~~~I~~~l 362 (363)
T cd03786 302 LRDRT-----ERPETVESGTNVLVGTDPEAILAAIEKLL-SDEFAYSLMS--INPYGDGNASERIVEIL 362 (363)
T ss_pred eCCCC-----ccchhhheeeEEecCCCHHHHHHHHHHHh-cCchhhhcCC--CCCCCCCHHHHHHHHHh
Confidence 87421 233567788888776 6899999999999 7888888886 66777788889988875
No 48
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.90 E-value=3.8e-21 Score=198.57 Aligned_cols=275 Identities=18% Similarity=0.124 Sum_probs=181.8
Q ss_pred HHHHHHHH--hhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC--CCcc----------------------
Q 012492 154 KEVEAGLM--EYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT--CHPT---------------------- 207 (462)
Q Consensus 154 ~~l~~~l~--~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~--~~~~---------------------- 207 (462)
+...++++ .++||+||++......++..+.+..+. .++|+|..+|+... ..+.
T Consensus 116 ~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~-~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (473)
T TIGR02095 116 RAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRP-NPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYG 194 (473)
T ss_pred HHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccC-CCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCC
Confidence 33444454 379999999975544443333332210 14899988886531 0010
Q ss_pred ------cccCCCcEEEEcCHHHHHHHHHc----CC------CCCcEEEcCCCCChhhhcccC------------------
Q 012492 208 ------WFHPRVNRCYCPSKEVAKRASYF----GL------EVSQIRVFGLPIRPSFVRAVI------------------ 253 (462)
Q Consensus 208 ------~~~~~~d~~i~~s~~~~~~l~~~----gi------~~~~i~v~g~pv~~~~~~~~~------------------ 253 (462)
.....+|+++++|+..++.+... |+ ++.++.+++|+++.+.+.+..
T Consensus 195 ~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~ 274 (473)
T TIGR02095 195 RVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAE 274 (473)
T ss_pred chHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhh
Confidence 01235788999999988877642 22 346899999999887655421
Q ss_pred ChHHHHHHcCCCC--CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCC-HHHHHHHhhc--cCCCC
Q 012492 254 SKDNLRLELQMDP--ILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRN-RTLASTLQSE--EWKIP 328 (462)
Q Consensus 254 ~~~~~r~~l~l~~--~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~-~~l~~~~~~~--~~~~~ 328 (462)
.+..+++++|++. +.++++++|+....+++..+++++ +.+.+ .++++++ +|.+ ..+.+.++++ ....+
T Consensus 275 ~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~-~~l~~-----~~~~lvi-~G~g~~~~~~~l~~~~~~~~~~ 347 (473)
T TIGR02095 275 NKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAAL-PELLE-----LGGQLVV-LGTGDPELEEALRELAERYPGN 347 (473)
T ss_pred hHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHH-HHHHH-----cCcEEEE-ECCCCHHHHHHHHHHHHHCCCc
Confidence 1356788899975 667666666555556555555544 55543 2467655 4555 2333344332 23456
Q ss_pred eEEeccc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHC------CceeeeC--
Q 012492 329 VKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN------GAGVFTR-- 394 (462)
Q Consensus 329 V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~------G~g~~~~-- 394 (462)
+.+.+.. +++..+|+.||+++.+|. |.+++|||++|+|+|+++.++-.+ .+.+. +.|++++
T Consensus 348 v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e-----~v~~~~~~~~~~~G~l~~~~ 422 (473)
T TIGR02095 348 VRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLAD-----TVVDGDPEAESGTGFLFEEY 422 (473)
T ss_pred EEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccc-----eEecCCCCCCCCceEEeCCC
Confidence 7766543 446789999999999873 789999999999999998754322 12222 5677764
Q ss_pred CHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 395 SPKETARIVTEWFS---TKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 395 ~~~~la~~i~~ll~---~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
++++++++|.+++. ++++.+++|++++. .+.++|+++++.++++.++
T Consensus 423 d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 423 DPGALLAALSRALRLYRQDPSLWEALQKNAM--SQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh--ccCCCcHHHHHHHHHHHHh
Confidence 78999999998872 28999999998875 3689999999999998763
No 49
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.90 E-value=4e-21 Score=190.29 Aligned_cols=261 Identities=16% Similarity=0.120 Sum_probs=179.1
Q ss_pred HHhhCCCEEEECCcccch--HHHHHHHHcCCCCCCeEEEEecCCCCCCc----------------ccccCCCcEEEEcCH
Q 012492 160 LMEYKPDIIISVHPLMQH--IPLWVLKWQGLQKKVIFVTVITDLNTCHP----------------TWFHPRVNRCYCPSK 221 (462)
Q Consensus 160 l~~~kPDvVi~~~~~~~~--~~~~~~~~~~~~~~iP~v~~~~d~~~~~~----------------~~~~~~~d~~i~~s~ 221 (462)
....+||+|++++.+... .....++. .++|++...|+...... .+....++.+++.+.
T Consensus 83 ~~~~~~dii~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 158 (375)
T cd03821 83 LNIREADIVHVHGLWSYPSLAAARAARK----YGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSE 158 (375)
T ss_pred HhCCCCCEEEEecccchHHHHHHHHHHH----hCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCH
Confidence 456789999988754322 11222332 47899877776421110 112234677888876
Q ss_pred HHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCC
Q 012492 222 EVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGR 301 (462)
Q Consensus 222 ~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~ 301 (462)
........ +.+..++.+++|+++...+........ ++.++.+++.++++++|+....++...++.++ +.+.++ .
T Consensus 159 ~~~~~~~~-~~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~-~~l~~~---~ 232 (375)
T cd03821 159 QEAAEIRR-LGLKAPIAVIPNGVDIPPFAALPSRGR-RRKFPILPDKRIILFLGRLHPKKGLDLLIEAF-AKLAER---F 232 (375)
T ss_pred HHHHHHHh-hCCcccEEEcCCCcChhccCcchhhhh-hhhccCCCCCcEEEEEeCcchhcCHHHHHHHH-HHhhhh---c
Confidence 66555443 445678999999998765543222222 56677777777777776655556666555544 455442 4
Q ss_pred CCceEEEEccCCH-H----HHHHHhhccCCCCeEEeccch--hHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEe
Q 012492 302 PIGQLIIICGRNR-T----LASTLQSEEWKIPVKVRGFET--QMEKWMGACDCIITKAG----PGTIAEALIRGLPIILN 370 (462)
Q Consensus 302 ~~~~~lvv~G~~~-~----l~~~~~~~~~~~~V~~~g~~~--~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~ 370 (462)
+++++++ +|.+. . +...+++++...+|.+.|+++ ++..+|+.||++|.+|. |++++|||++|+|+|++
T Consensus 233 ~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~ 311 (375)
T cd03821 233 PDWHLVI-AGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTT 311 (375)
T ss_pred CCeEEEE-ECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEc
Confidence 6777655 45432 1 222235667788999999995 89999999999998874 89999999999999999
Q ss_pred cCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcHHHHHHHHHH
Q 012492 371 DYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFSTKTDELKRMSENALKL-AQPEAVVDIVKDIH 438 (462)
Q Consensus 371 ~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~-~~~~~~~~ia~~i~ 438 (462)
+.++. ..+...+.+++++ ++++++++|.+++ ++++.+++|++++++. .+.++++++++.+.
T Consensus 312 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 312 DKVPW------QELIEYGCGWVVDDDVDALAAALRRAL-ELPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred CCCCH------HHHhhcCceEEeCCChHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 86432 2233347777775 4599999999999 7999999999999998 67899999998875
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.90 E-value=3.5e-21 Score=194.52 Aligned_cols=262 Identities=15% Similarity=0.116 Sum_probs=174.1
Q ss_pred HHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEec----CCCC---CCc----c---------------cccCCC
Q 012492 160 LMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVIT----DLNT---CHP----T---------------WFHPRV 213 (462)
Q Consensus 160 l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~----d~~~---~~~----~---------------~~~~~~ 213 (462)
.+.++||+|++++.+.... .+.+. ..++|+|.+.+ .... ..+ . .....+
T Consensus 83 ~~~~~pdvi~~h~~~~~~~--~l~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 157 (396)
T cd03818 83 AKGFRPDVIVAHPGWGETL--FLKDV---WPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNALILLALAQA 157 (396)
T ss_pred hcCCCCCEEEECCccchhh--hHHHh---CCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhhHhHHHHHhC
Confidence 3557899999998775442 23222 14688886542 1100 000 0 113457
Q ss_pred cEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCC-hHHHHHHcCCCCCCcEEEEEeCCCC-CccHHHHHHHHH
Q 012492 214 NRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVIS-KDNLRLELQMDPILPAVLLMGGGEG-MGPVKETAMALG 291 (462)
Q Consensus 214 d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~-~~~~r~~l~l~~~~~~iLv~gG~~~-~~~~~~~l~~l~ 291 (462)
|.++++|+..++.+.+.. .+++.+++|+++.+.+.+... ....+....++++.++++++|+... .+++..+++++.
T Consensus 158 d~vi~~s~~~~~~~~~~~--~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~ 235 (396)
T cd03818 158 DAGVSPTRWQRSTFPAEL--RSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALP 235 (396)
T ss_pred CEEECCCHHHHhhCcHhh--ccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHH
Confidence 999999998887664421 368999999998776554211 1112222334456666666665455 466666666553
Q ss_pred HhhhcccCCCCCceEEEEccCC----------H-HHHHHHhhcc---CCCCeEEeccc--hhHHHHHHhcchheecCC--
Q 012492 292 ESLLDKETGRPIGQLIIICGRN----------R-TLASTLQSEE---WKIPVKVRGFE--TQMEKWMGACDCIITKAG-- 353 (462)
Q Consensus 292 ~~l~~~~~~~~~~~~lvv~G~~----------~-~l~~~~~~~~---~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg-- 353 (462)
.+.+ ..|+++++++++.+ . ...+.+++++ ..++|+|.|++ +++..+|+.||++|.+|.
T Consensus 236 -~l~~---~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e 311 (396)
T cd03818 236 -RLLR---ARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPF 311 (396)
T ss_pred -HHHH---HCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCccc
Confidence 4443 25788877665422 1 1122233333 24789999998 689999999999998774
Q ss_pred --hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-c
Q 012492 354 --PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQP-E 428 (462)
Q Consensus 354 --~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~-~ 428 (462)
+.+++|||+||+|+|+++.++. .+.+.+...|++++ |+++++++|.+++ +|++.+++|++++++.+.. +
T Consensus 312 ~~~~~llEAmA~G~PVIas~~~g~-----~e~i~~~~~G~lv~~~d~~~la~~i~~ll-~~~~~~~~l~~~ar~~~~~~f 385 (396)
T cd03818 312 VLSWSLLEAMACGCLVVGSDTAPV-----REVITDGENGLLVDFFDPDALAAAVIELL-DDPARRARLRRAARRTALRYD 385 (396)
T ss_pred ccchHHHHHHHCCCCEEEcCCCCc-----hhhcccCCceEEcCCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHhc
Confidence 6789999999999999987432 22333334677764 7999999999999 7999999999999998865 8
Q ss_pred HHHHHHHHHH
Q 012492 429 AVVDIVKDIH 438 (462)
Q Consensus 429 ~~~~ia~~i~ 438 (462)
+++.+++.+.
T Consensus 386 s~~~~~~~~~ 395 (396)
T cd03818 386 LLSVCLPRQL 395 (396)
T ss_pred cHHHHHHHHh
Confidence 9998887764
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.89 E-value=2.9e-21 Score=192.19 Aligned_cols=259 Identities=19% Similarity=0.193 Sum_probs=175.6
Q ss_pred HhhCCCEEEECCcc-cchHHHHHHHHcCCCCCCeEEEEecCCCCCC---------c-----------ccccCCCcEEEEc
Q 012492 161 MEYKPDIIISVHPL-MQHIPLWVLKWQGLQKKVIFVTVITDLNTCH---------P-----------TWFHPRVNRCYCP 219 (462)
Q Consensus 161 ~~~kPDvVi~~~~~-~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~---------~-----------~~~~~~~d~~i~~ 219 (462)
+..+||+|+++++. ....+....+.. .++|++...||..... . .+....+|.+++.
T Consensus 96 ~~~~~D~v~~~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 172 (394)
T cd03794 96 RRRRPDVIIATSPPLLIALAALLLARL---KGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRADAIVVI 172 (394)
T ss_pred cccCCCEEEEcCChHHHHHHHHHHHHh---cCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcCCEEEEE
Confidence 48899999999833 222222222221 3789998888753100 0 1234568999999
Q ss_pred CHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCC-CccHHHHHHHHHHhhhccc
Q 012492 220 SKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEG-MGPVKETAMALGESLLDKE 298 (462)
Q Consensus 220 s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~-~~~~~~~l~~l~~~l~~~~ 298 (462)
|+...+.+...+.+..++.+++++++............ +.++..+.+.. ++++.|+.. .++...++.++ +.+.+
T Consensus 173 s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~i~~~G~~~~~k~~~~l~~~~-~~l~~-- 247 (394)
T cd03794 173 SPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADES-LRKELGLDDKF-VVLYAGNIGRAQGLDTLLEAA-ALLKD-- 247 (394)
T ss_pred CHHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhh-hhhccCCCCcE-EEEEecCcccccCHHHHHHHH-HHHhh--
Confidence 99999888766788889999999998876554222221 33344444444 455555555 44455555444 55543
Q ss_pred CCCCCceEEEEccCCHH---HHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC---------hhhHHHHHHhC
Q 012492 299 TGRPIGQLIIICGRNRT---LASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG---------PGTIAEALIRG 364 (462)
Q Consensus 299 ~~~~~~~~lvv~G~~~~---l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg---------~~t~~EAla~G 364 (462)
.++++++ ++|.+.. +.+.+... ...+|.+.|+. +++.++|+.||++|.++. +++++|||++|
T Consensus 248 --~~~~~l~-i~G~~~~~~~~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G 323 (394)
T cd03794 248 --RPDIRFL-IVGDGPEKEELKELAKAL-GLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAG 323 (394)
T ss_pred --cCCeEEE-EeCCcccHHHHHHHHHHc-CCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCC
Confidence 1467655 4565542 22322222 33689999987 689999999999997653 45589999999
Q ss_pred CCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CcHHHHHHHHH
Q 012492 365 LPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQ-PEAVVDIVKDI 437 (462)
Q Consensus 365 ~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~-~~~~~~ia~~i 437 (462)
+|+|+++..+..+ .+.+.+.|+++. ++++++++|.+++ +|++.+++|++++++++. .++++.+++.+
T Consensus 324 ~pvi~~~~~~~~~-----~~~~~~~g~~~~~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 324 KPVLASVDGESAE-----LVEEAGAGLVVPPGDPEALAAAILELL-DDPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred CcEEEecCCCchh-----hhccCCcceEeCCCCHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 9999998754322 344435666654 7999999999999 799999999999999887 78999998875
No 52
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.89 E-value=7.1e-21 Score=200.48 Aligned_cols=380 Identities=16% Similarity=0.190 Sum_probs=222.5
Q ss_pred cccccchhhhccCCCCCCeEEEEe--c-----------CCCchHHHHHHHHHHHH--------hhhcCCce-EEEEEecc
Q 012492 46 EDDESTVELMQIGAERTKNVLILM--S-----------DTGGGHRASAEAIRDAF--------KIEFGDEY-RIFVKDVC 103 (462)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~kIli~~--~-----------~~G~Gh~~~a~aLa~~L--------~~~g~~~~-~v~v~d~~ 103 (462)
.-+..+.|-+=+.=++.|||++++ + ++| |.......+|++| .++|++.. +|.+.+-.
T Consensus 239 ~p~~~~~e~f~~~~p~~~rIa~lS~Hg~~~~~~~lG~~DtG-Gq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~ 317 (784)
T TIGR02470 239 APDPSVLEAFLGRIPMVFNVVILSPHGYFGQENVLGLPDTG-GQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRL 317 (784)
T ss_pred CCChhHHHHHHhhCCccceEEEEecccccCCccccCCCCCC-CceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecC
Confidence 345666677777777889999986 2 154 8888888788875 57776432 34443221
Q ss_pred -ccccCCCchh-hHHHHHHHHhhhHHHHHHhhcCC----cchhhHHHHHHHHHHHHHHHHHHHH-h--hCCCEEEECCcc
Q 012492 104 -KEYAGWPLND-MERSYKFMVKHVQLWKVAFHSTS----PKWIHSCYLAAMAAYYAKEVEAGLM-E--YKPDIIISVHPL 174 (462)
Q Consensus 104 -~~~~~~~~~~-~~~~y~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~-~--~kPDvVi~~~~~ 174 (462)
+...+..... .+... ......+...++.... .+|+...-....-..+...+.+.+. + .+||+||+++..
T Consensus 318 ~~~~~~~~~~~~~e~~~--~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d 395 (784)
T TIGR02470 318 IPDAEGTTCNQRLEKVY--GTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSD 395 (784)
T ss_pred CCCcccccccccccccc--CCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 1111100000 00000 0000011111111100 1122111111011233444444443 2 369999998865
Q ss_pred cchHHHHHHHHcCCCCCCeEEEEecCCCCC---Cc--c------------------cccCCCcEEEEcCHHHHH----HH
Q 012492 175 MQHIPLWVLKWQGLQKKVIFVTVITDLNTC---HP--T------------------WFHPRVNRCYCPSKEVAK----RA 227 (462)
Q Consensus 175 ~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~---~~--~------------------~~~~~~d~~i~~s~~~~~----~l 227 (462)
.+..+..+++. .+||.+.+.|.+... +. . +....+|.+++.|..... ..
T Consensus 396 ~glva~lla~~----lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v 471 (784)
T TIGR02470 396 GNLVASLLARK----LGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSV 471 (784)
T ss_pred hHHHHHHHHHh----cCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhh
Confidence 54443333433 589988776643210 00 0 122347889998865422 11
Q ss_pred HH----------------cCC--CCCcEEEcCCCCChhhhcccCCh------------------HHHHHHcCC--CCCCc
Q 012492 228 SY----------------FGL--EVSQIRVFGLPIRPSFVRAVISK------------------DNLRLELQM--DPILP 269 (462)
Q Consensus 228 ~~----------------~gi--~~~~i~v~g~pv~~~~~~~~~~~------------------~~~r~~l~l--~~~~~ 269 (462)
.+ .|+ ++.|+.+++++++...+.+.... ...++.+|+ ++++|
T Consensus 472 ~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kp 551 (784)
T TIGR02470 472 GQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKP 551 (784)
T ss_pred hhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCc
Confidence 11 133 45789999999998755431111 112355665 56778
Q ss_pred EEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH--------------HHHHHHhhccCCCCeEEeccc
Q 012492 270 AVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR--------------TLASTLQSEEWKIPVKVRGFE 335 (462)
Q Consensus 270 ~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~--------------~l~~~~~~~~~~~~V~~~g~~ 335 (462)
+|+.+|+....|++..++.++. .++.. .+++++++++|... ++.+.++++++.++|.|.|+.
T Consensus 552 iIl~VGRL~~~KGid~LIeA~~-~l~~l---~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~ 627 (784)
T TIGR02470 552 IIFSMARLDRVKNLTGLVECYG-RSPKL---RELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQ 627 (784)
T ss_pred EEEEEeCCCccCCHHHHHHHHH-HhHhh---CCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCc
Confidence 7777776666677776666653 33221 23567766665421 123345567888999999985
Q ss_pred ---hhHHHHHH----hcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHH
Q 012492 336 ---TQMEKWMG----ACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARI 402 (462)
Q Consensus 336 ---~~~~~l~~----~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~ 402 (462)
.+..++|+ .+|+||.+|. |.|++|||+||+|+|+++.++ ..+.+.+...|++++ |+++++++
T Consensus 628 ~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG-----~~EiV~dg~tGfLVdp~D~eaLA~a 702 (784)
T TIGR02470 628 LNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG-----PLEIIQDGVSGFHIDPYHGEEAAEK 702 (784)
T ss_pred CCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC-----HHHHhcCCCcEEEeCCCCHHHHHHH
Confidence 34555654 3479998874 999999999999999998743 223344444688775 68999999
Q ss_pred HHHHhc---CCHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHH
Q 012492 403 VTEWFS---TKTDELKRMSENALKLA-QPEAVVDIVKDIHDLA 441 (462)
Q Consensus 403 i~~ll~---~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~l~ 441 (462)
|.++++ .|++.+++|++++++.+ +.++|+.+++.+.++.
T Consensus 703 L~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 703 IVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 987652 59999999999998875 6899999999999876
No 53
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.89 E-value=3e-21 Score=207.11 Aligned_cols=265 Identities=12% Similarity=0.045 Sum_probs=180.9
Q ss_pred CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC---------------------cc------cccCCCcEE
Q 012492 164 KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH---------------------PT------WFHPRVNRC 216 (462)
Q Consensus 164 kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~---------------------~~------~~~~~~d~~ 216 (462)
.||+||+++...... ...++.. .+||+|...|...... +. +....+|.+
T Consensus 310 ~pDvIHaHyw~sG~a-a~~L~~~---lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~V 385 (1050)
T TIGR02468 310 WPYVIHGHYADAGDS-AALLSGA---LNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIV 385 (1050)
T ss_pred CCCEEEECcchHHHH-HHHHHHh---hCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEE
Confidence 499999986444333 3333322 5899998777442100 00 123457899
Q ss_pred EEcCHHHHHHHHHc--CCC---------------------CCcEEEcCCCCChhhhcccC---C----------------
Q 012492 217 YCPSKEVAKRASYF--GLE---------------------VSQIRVFGLPIRPSFVRAVI---S---------------- 254 (462)
Q Consensus 217 i~~s~~~~~~l~~~--gi~---------------------~~~i~v~g~pv~~~~~~~~~---~---------------- 254 (462)
++.|....+.+.+. +++ ..++.|++++++...+.+.. +
T Consensus 386 IasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~ 465 (1050)
T TIGR02468 386 ITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPP 465 (1050)
T ss_pred EEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccch
Confidence 99998888754332 122 23899999999987555411 0
Q ss_pred -hHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH--------------HHHHH
Q 012492 255 -KDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR--------------TLAST 319 (462)
Q Consensus 255 -~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~--------------~l~~~ 319 (462)
...++ ++..++++++||++|+....|++..+++++. .+.+.. ..+++. + ++|.++ ++.+.
T Consensus 466 ~~~~l~-r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~-~L~~l~-~~~nL~-L-IiG~gdd~d~l~~~~~~~l~~L~~l 540 (1050)
T TIGR02468 466 IWSEIM-RFFTNPRKPMILALARPDPKKNITTLVKAFG-ECRPLR-ELANLT-L-IMGNRDDIDEMSSGSSSVLTSVLKL 540 (1050)
T ss_pred hhHHHH-hhcccCCCcEEEEEcCCccccCHHHHHHHHH-HhHhhc-cCCCEE-E-EEecCchhhhhhccchHHHHHHHHH
Confidence 01222 2334667787877776666677777776664 443211 124444 2 334321 13445
Q ss_pred HhhccCCCCeEEeccc--hhHHHHHHhc----chheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCc
Q 012492 320 LQSEEWKIPVKVRGFE--TQMEKWMGAC----DCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGA 389 (462)
Q Consensus 320 ~~~~~~~~~V~~~g~~--~~~~~l~~~a----D~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~ 389 (462)
++++++.++|.|.|+. +++..+|+.| |+||.+|. |++++|||+||+|||+++.++.. +.+.+...
T Consensus 541 i~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~-----EII~~g~n 615 (1050)
T TIGR02468 541 IDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPV-----DIHRVLDN 615 (1050)
T ss_pred HHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcH-----HHhccCCc
Confidence 5667888999999985 7899999988 69999873 99999999999999999864322 22333346
Q ss_pred eeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 390 GVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 390 g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
|++++ |+++++++|.+++ +|++.+++|++++++.+..|+|+.+++.+.+.+..
T Consensus 616 GlLVdP~D~eaLA~AL~~LL-~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 616 GLLVDPHDQQAIADALLKLV-ADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIAS 670 (1050)
T ss_pred EEEECCCCHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 77765 7999999999999 79999999999999998899999999999887653
No 54
>PLN02939 transferase, transferring glycosyl groups
Probab=99.89 E-value=2.6e-21 Score=204.69 Aligned_cols=410 Identities=13% Similarity=0.072 Sum_probs=240.8
Q ss_pred ccCCCcccchHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCcccccchhh---hccCCCCCCeEEEEec------CCCch
Q 012492 5 VAYPKKAVSLTEKVLQRVYGNHSTSSSSNLGCSFDSDDDCEEDDESTVEL---MQIGAERTKNVLILMS------DTGGG 75 (462)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~kIli~~~------~~G~G 75 (462)
..++-.|..+|+.|..+- .+.|..+.+..+..|.|-..++ ...++++.|||+++++ -+| |
T Consensus 431 ~~~~~~a~~lr~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILfVasE~aP~aKtG-G 499 (977)
T PLN02939 431 KISNNDAKLLREMVWKRD----------GRIREAYLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEMAPVAKVG-G 499 (977)
T ss_pred cCChhhHHHHHHHHHhhh----------hhHHHHHHHHhcCchHHHHHHHHHhccCCCCCCCEEEEEEcccccccccc-c
Confidence 344555555666665331 2234444444455555544444 6677778899999983 375 9
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHH----------HH----------HHHhhhHHH------H
Q 012492 76 HRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERS----------YK----------FMVKHVQLW------K 129 (462)
Q Consensus 76 h~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~----------y~----------~~~~~~~l~------~ 129 (462)
-.-.+.+|.++|++.||+ ++|++-.+ ........... +. .....++.| .
T Consensus 500 LaDVv~sLPkAL~~~Ghd-V~VIlP~Y----~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~GV~vyfId~~~~ 574 (977)
T PLN02939 500 LADVVSGLGKALQKKGHL-VEIVLPKY----DCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFIEPQHP 574 (977)
T ss_pred HHHHHHHHHHHHHHcCCe-EEEEeCCC----cccChhhhhcccccceEEEEeecCceeEEEEEEEEECCeeEEEEecCCc
Confidence 999999999999999863 34332211 10000000000 00 000000000 0
Q ss_pred -HHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHh--hCCCEEEECCcccchH-HHHHHHH--cCCCCCCeEEEEecCCCC
Q 012492 130 -VAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLME--YKPDIIISVHPLMQHI-PLWVLKW--QGLQKKVIFVTVITDLNT 203 (462)
Q Consensus 130 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~kPDvVi~~~~~~~~~-~~~~~~~--~~~~~~iP~v~~~~d~~~ 203 (462)
..|.+...-.....+..+ ..+.+...+++.+ ++|||||++....+.+ +++.... .+. .++|+|..+|....
T Consensus 575 ~~fF~R~~iYg~~Dn~~RF--~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~-~~~ktVfTIHNl~y 651 (977)
T PLN02939 575 SKFFWRAQYYGEHDDFKRF--SYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGF-NSARICFTCHNFEY 651 (977)
T ss_pred hhccCCCCCCCCccHHHHH--HHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccC-CCCcEEEEeCCCcC
Confidence 000000000000111111 1233444455654 7999999987665543 2222111 121 46888888886531
Q ss_pred --C-----------------Ccccc----c----------CCCcEEEEcCHHHHHHHHHc---------CCCCCcEEEcC
Q 012492 204 --C-----------------HPTWF----H----------PRVNRCYCPSKEVAKRASYF---------GLEVSQIRVFG 241 (462)
Q Consensus 204 --~-----------------~~~~~----~----------~~~d~~i~~s~~~~~~l~~~---------gi~~~~i~v~g 241 (462)
. ++.++ + -.+|.++++|+..++.+... +.+..++.+|.
T Consensus 652 QG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIl 731 (977)
T PLN02939 652 QGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGIL 731 (977)
T ss_pred CCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEe
Confidence 0 01111 1 13689999999998887642 23457899999
Q ss_pred CCCChhhhcccCC------------------hHHHHHHcCCCC---CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCC
Q 012492 242 LPIRPSFVRAVIS------------------KDNLRLELQMDP---ILPAVLLMGGGEGMGPVKETAMALGESLLDKETG 300 (462)
Q Consensus 242 ~pv~~~~~~~~~~------------------~~~~r~~l~l~~---~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~ 300 (462)
|+|+...+.+..+ +..+++++|++. +.++|+++|+....|++..++.++ ..+.+
T Consensus 732 NGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~-~~Ll~---- 806 (977)
T PLN02939 732 NGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAI-YKTAE---- 806 (977)
T ss_pred cceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHH-HHHhh----
Confidence 9999876654322 456889999974 456666666655566665555544 34332
Q ss_pred CCCceEEEEccCCH------HHHHHHhhccCCCCeEEeccchhH--HHHHHhcchheecCC----hhhHHHHHHhCCCEE
Q 012492 301 RPIGQLIIICGRNR------TLASTLQSEEWKIPVKVRGFETQM--EKWMGACDCIITKAG----PGTIAEALIRGLPII 368 (462)
Q Consensus 301 ~~~~~~lvv~G~~~------~l~~~~~~~~~~~~V~~~g~~~~~--~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI 368 (462)
+++++++ +|.++ .+.+...+++..++|.|.|+.++. ..+|+.||+||.||. |.+++|||++|+|+|
T Consensus 807 -~dvqLVI-vGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPV 884 (977)
T PLN02939 807 -LGGQFVL-LGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPI 884 (977)
T ss_pred -cCCEEEE-EeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEE
Confidence 3566554 45442 233444456677889999988553 579999999999984 999999999999999
Q ss_pred EecCCCCcccc---chHHH-HHCCceeee--CCHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 012492 369 LNDYIPGQEKG---NVPYV-VDNGAGVFT--RSPKETARIVTEWFS---TKTDELKRMSENALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 369 ~~~~~~~~~~~---n~~~l-~~~G~g~~~--~~~~~la~~i~~ll~---~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~ 439 (462)
+++.++..+.. +...+ .+.+.|+++ .++++++++|.+++. +|++.+++|++++. ...++|+.+++.+++
T Consensus 885 Vs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am--~~dFSWe~~A~qYee 962 (977)
T PLN02939 885 VRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDM--NIDFSWDSSASQYEE 962 (977)
T ss_pred EecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--HhcCCHHHHHHHHHH
Confidence 98875432210 00001 112456665 478899998887762 47999999998764 467999999999888
Q ss_pred HHh
Q 012492 440 LAA 442 (462)
Q Consensus 440 l~~ 442 (462)
+.+
T Consensus 963 LY~ 965 (977)
T PLN02939 963 LYQ 965 (977)
T ss_pred HHH
Confidence 765
No 55
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.89 E-value=5.8e-21 Score=189.30 Aligned_cols=260 Identities=18% Similarity=0.160 Sum_probs=181.0
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC-Ccc---------------cccCCCcEEEEcCH
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC-HPT---------------WFHPRVNRCYCPSK 221 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~-~~~---------------~~~~~~d~~i~~s~ 221 (462)
..+++.+||+|++++...... +. .++|++..+||.... ++. ...+.+|.++++|+
T Consensus 79 ~~~~~~~~Dii~~~~~~~~~~-----~~----~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~ 149 (365)
T cd03809 79 LLLLLLGLDLLHSPHNTAPLL-----RL----RGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSE 149 (365)
T ss_pred HHhhhcCCCeeeecccccCcc-----cC----CCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccH
Confidence 445668999999998765432 22 489999988886421 111 11245799999999
Q ss_pred HHHHHHHHc-CCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCC
Q 012492 222 EVAKRASYF-GLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETG 300 (462)
Q Consensus 222 ~~~~~l~~~-gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~ 300 (462)
...+.+.+. +.+..++.+++++++....... ..+. +.+.....+.+.++++|+....++...+++.+ ..+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~-~~~~~~--- 223 (365)
T cd03809 150 ATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPP-AEAE-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAF-ARLPAK--- 223 (365)
T ss_pred HHHHHHHHHhCcCHHHEEeeccccCccccCCC-chHH-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHH-HHHHHh---
Confidence 999988775 5567789999999987765542 2221 33344445556555555444445555555544 455442
Q ss_pred CCCceEEEEccCCHH---HHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEec
Q 012492 301 RPIGQLIIICGRNRT---LASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILND 371 (462)
Q Consensus 301 ~~~~~~lvv~G~~~~---l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~ 371 (462)
.++++++++++.... ..+.+++.+...+|++.|++ +++.++|+.||+++.++. +.+++|||++|+|+|+++
T Consensus 224 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 303 (365)
T cd03809 224 GPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASN 303 (365)
T ss_pred cCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecC
Confidence 235665554433321 22333456778899999999 789999999999998763 788999999999999988
Q ss_pred CCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 012492 372 YIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIH 438 (462)
Q Consensus 372 ~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~ 438 (462)
.+...+ .+.+.|..+...+++++++++.+++ +|++.+++|++++++.+..++|+++++.+.
T Consensus 304 ~~~~~e-----~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 304 ISSLPE-----VAGDAALYFDPLDPEALAAAIERLL-EDPALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred CCCccc-----eecCceeeeCCCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 753222 1223333444457999999999999 799999999999999899999999998875
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.89 E-value=4e-20 Score=182.64 Aligned_cols=274 Identities=16% Similarity=0.187 Sum_probs=187.8
Q ss_pred HHHHHHHHHHH--hhCCCEEEECCcccchHHH-HHHHHcCCCCCCeEEEEecCCCCCCc----------ccccCCCcEEE
Q 012492 151 YYAKEVEAGLM--EYKPDIIISVHPLMQHIPL-WVLKWQGLQKKVIFVTVITDLNTCHP----------TWFHPRVNRCY 217 (462)
Q Consensus 151 ~~~~~l~~~l~--~~kPDvVi~~~~~~~~~~~-~~~~~~~~~~~iP~v~~~~d~~~~~~----------~~~~~~~d~~i 217 (462)
.....+.++++ ..+||+|+++.+....... ...+. .++|++...|+...... .+....+|.++
T Consensus 78 ~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii 153 (377)
T cd03798 78 LAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRK----LGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVI 153 (377)
T ss_pred HHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHh----cCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEE
Confidence 34456677888 9999999998765544322 22222 46899888887542110 12345689999
Q ss_pred EcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcc
Q 012492 218 CPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDK 297 (462)
Q Consensus 218 ~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~ 297 (462)
+.|+...+.+.+.+.+..++.+++++++...+... ..... .+++.+.+.+.++++|+....++...++..+ +.+.+.
T Consensus 154 ~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~-~~~~~~ 230 (377)
T cd03798 154 AVSEALADELKALGIDPEKVTVIPNGVDTERFSPA-DRAEA-RKLGLPEDKKVILFVGRLVPRKGIDYLIEAL-ARLLKK 230 (377)
T ss_pred eCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCc-chHHH-HhccCCCCceEEEEeccCccccCHHHHHHHH-HHHHhc
Confidence 99999999988776777899999999987765532 22111 3344555555555555544455565555544 455432
Q ss_pred cCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecC----ChhhHHHHHHhCCCEE
Q 012492 298 ETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKA----GPGTIAEALIRGLPII 368 (462)
Q Consensus 298 ~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~s----g~~t~~EAla~G~PvI 368 (462)
.++++++ ++|.+. .+.+.+++.+...+|.+.|++ +++.++|+.||+++.++ .+.+++|||++|+|+|
T Consensus 231 ---~~~~~l~-i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI 306 (377)
T cd03798 231 ---RPDVHLV-IVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVV 306 (377)
T ss_pred ---CCCeEEE-EEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEE
Confidence 3567655 456543 244555556777899999998 57899999999999775 3889999999999999
Q ss_pred EecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHhc
Q 012492 369 LNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALK-LAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 369 ~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~-~~~~~~~~~ia~~i~~l~~~ 443 (462)
+++.+. ..+.+.+.+.|+++. +++++++++.+++ ++++. ++.+++++ ..+.++++.+++.+.+++++
T Consensus 307 ~~~~~~-----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~-~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 307 ATDVGG-----IPEIITDGENGLLVPPGDPEALAEAILRLL-ADPWL--RLGRAARRRVAERFSWENVAERLLELYRE 376 (377)
T ss_pred EecCCC-----hHHHhcCCcceeEECCCCHHHHHHHHHHHh-cCcHH--HHhHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 987643 223344444566654 7899999999999 67776 45555544 45678999999999988763
No 57
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.89 E-value=8.8e-21 Score=185.84 Aligned_cols=321 Identities=16% Similarity=0.173 Sum_probs=201.5
Q ss_pred eEEEEecCC-CchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 64 NVLILMSDT-GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 64 kIli~~~~~-G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
||++++.+. ++|+...+..++++|.+.|+ ++.+......... .......... . . ..... ...
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~---~v~v~~~~~~~~~--~~~~~~~~~~-~---~-----~~~~~-~~~-- 63 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGY---DVTLVVLRDEGDY--LELLPSNVKL-I---P-----VRVLK-LKS-- 63 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCc---eEEEEEcCCCCcc--ccccccchhh-h---c-----eeeee-ccc--
Confidence 688888664 56999999999999988875 4444422211000 0000000000 0 0 00000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCc-ccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc----------ccccC
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHP-LMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP----------TWFHP 211 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~-~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~----------~~~~~ 211 (462)
.........+.+++++.+||+|++++. ..... ....+. .++|++.+.|+...... .+...
T Consensus 64 ----~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~-~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (353)
T cd03811 64 ----LRDLLAILRLRRLLRKEKPDVVISHLTTTPNVL-ALLAAR----LGTKLIVWEHNSLSLELKRKLRLLLLIRKLYR 134 (353)
T ss_pred ----ccchhHHHHHHHHHHhcCCCEEEEcCccchhHH-HHHHhh----cCCceEEEEcCcchhhhccchhHHHHHHhhcc
Confidence 011234456778899999999999987 32221 122221 26899988887642111 12346
Q ss_pred CCcEEEEcCHHHHHHHHHc-CCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHH
Q 012492 212 RVNRCYCPSKEVAKRASYF-GLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMAL 290 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~l~~~-gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l 290 (462)
.+|.++++|+...+.+.+. +.+..++.+++++++............ .++.+.+...++.+|+....++...+++.+
T Consensus 135 ~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~ 211 (353)
T cd03811 135 RADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL---ELGIPPDGPVILAVGRLSPQKGFDTLIRAF 211 (353)
T ss_pred ccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh---hcCCCCCceEEEEEecchhhcChHHHHHHH
Confidence 7899999999999888776 344678999999998765543211111 334455555555555444345555555444
Q ss_pred HHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHh
Q 012492 291 GESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIR 363 (462)
Q Consensus 291 ~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~ 363 (462)
+.+.+. .++++++++ |.+. .+.+.+++++...+|.+.|+.+++.++|+.||++|.+|. |++++|||++
T Consensus 212 -~~l~~~---~~~~~l~i~-G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~ 286 (353)
T cd03811 212 -ALLRKE---GPDARLVIL-GDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMAL 286 (353)
T ss_pred -HHhhhc---CCCceEEEE-cCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHh
Confidence 555432 356776654 4443 345566677788899999999999999999999998763 8999999999
Q ss_pred CCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHH---HHHHHHHhcCCHHHHHHHHHHHHhh
Q 012492 364 GLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKET---ARIVTEWFSTKTDELKRMSENALKL 424 (462)
Q Consensus 364 G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~l---a~~i~~ll~~d~~~~~~m~~~a~~~ 424 (462)
|+|+|+++.++ ..+.+.+.+.|++++ +++.+ .+.+..++ ++++.+++|++++++.
T Consensus 287 G~PvI~~~~~~-----~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~ 346 (353)
T cd03811 287 GTPVVATDCPG-----PREILEDGENGLLVPVGDEAALAAAALALLDLL-LDPELRERLAAAARER 346 (353)
T ss_pred CCCEEEcCCCC-----hHHHhcCCCceEEECCCCHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHH
Confidence 99999998652 233455556677765 46666 56667777 7888899998855443
No 58
>PLN02316 synthase/transferase
Probab=99.88 E-value=8.7e-20 Score=196.56 Aligned_cols=269 Identities=13% Similarity=0.022 Sum_probs=178.9
Q ss_pred hCCCEEEECCcccchHHHHHHHHcC--CCCCCeEEEEecCCCCCC--cccccCCCcEEEEcCHHHHHHHHHcC-CC--CC
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQG--LQKKVIFVTVITDLNTCH--PTWFHPRVNRCYCPSKEVAKRASYFG-LE--VS 235 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~--~~~~iP~v~~~~d~~~~~--~~~~~~~~d~~i~~s~~~~~~l~~~g-i~--~~ 235 (462)
++|||||++.-....++.++.+..+ ...++|+|..+|...... ..+....+|+++++|+..++.+...+ ++ ..
T Consensus 708 ~~PDIIHaHDW~talva~llk~~~~~~~~~~~p~V~TiHnl~~~~n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~ 787 (1036)
T PLN02316 708 FHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKARVVFTIHNLEFGANHIGKAMAYADKATTVSPTYSREVSGNSAIAPHLY 787 (1036)
T ss_pred CCCCEEEECCChHHHHHHHHHHhhhhhccCCCCEEEEeCCcccchhHHHHHHHHCCEEEeCCHHHHHHHHhccCcccccC
Confidence 6999999986544333333222111 014689998888643110 11233568999999999998887653 43 37
Q ss_pred cEEEcCCCCChhhhcccC-------------------ChHHHHHHcCCCC-CCcEEEEEeCCCCCccHHHHHHHHHHhhh
Q 012492 236 QIRVFGLPIRPSFVRAVI-------------------SKDNLRLELQMDP-ILPAVLLMGGGEGMGPVKETAMALGESLL 295 (462)
Q Consensus 236 ~i~v~g~pv~~~~~~~~~-------------------~~~~~r~~l~l~~-~~~~iLv~gG~~~~~~~~~~l~~l~~~l~ 295 (462)
++.+++|+|+...+.+.. .+..+++++|++. +.|+++++|+....|++..++.++ ..+.
T Consensus 788 Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al-~~ll 866 (1036)
T PLN02316 788 KFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAI-WRTL 866 (1036)
T ss_pred CEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHH-HHHh
Confidence 899999999876543311 1345788899974 567777777666666655555554 4433
Q ss_pred cccCCCCCceEEEEccCC--HH----HHHHHhhccC--CCCeEEeccchhH--HHHHHhcchheecCC----hhhHHHHH
Q 012492 296 DKETGRPIGQLIIICGRN--RT----LASTLQSEEW--KIPVKVRGFETQM--EKWMGACDCIITKAG----PGTIAEAL 361 (462)
Q Consensus 296 ~~~~~~~~~~~lvv~G~~--~~----l~~~~~~~~~--~~~V~~~g~~~~~--~~l~~~aD~vV~~sg----~~t~~EAl 361 (462)
+ .++++++ +|.+ .. +.+...+++. .++|.|.+..++. ..+|+.||+++.||. |.+.+|||
T Consensus 867 ~-----~~~qlVI-vG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAM 940 (1036)
T PLN02316 867 E-----RNGQVVL-LGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAM 940 (1036)
T ss_pred h-----cCcEEEE-EeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHH
Confidence 2 2567655 4543 22 3334444433 5678887666443 379999999999984 99999999
Q ss_pred HhCCCEEEecCCCCccccchHHHHH-------------CCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-
Q 012492 362 IRGLPIILNDYIPGQEKGNVPYVVD-------------NGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLA- 425 (462)
Q Consensus 362 a~G~PvI~~~~~~~~~~~n~~~l~~-------------~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~- 425 (462)
++|+|+|++..++-.+ .+.+ .+.|++++ ++++++.+|.+++...++.+..|++.+++..
T Consensus 941 a~GtppVvs~vGGL~D-----tV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~ 1015 (1036)
T PLN02316 941 RYGSIPVVRKTGGLFD-----TVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVME 1015 (1036)
T ss_pred HcCCCeEEEcCCCcHh-----hccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999987654222 1221 24677765 6899999999998322456677787777764
Q ss_pred CCcHHHHHHHHHHHHHhc
Q 012492 426 QPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 426 ~~~~~~~ia~~i~~l~~~ 443 (462)
+.++|+.+|+.++++.++
T Consensus 1016 ~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 1016 QDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred hhCCHHHHHHHHHHHHHH
Confidence 579999999999998764
No 59
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.88 E-value=5.4e-21 Score=193.93 Aligned_cols=257 Identities=11% Similarity=0.011 Sum_probs=169.5
Q ss_pred HHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEec------CCCC----------------C------------
Q 012492 159 GLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVIT------DLNT----------------C------------ 204 (462)
Q Consensus 159 ~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~------d~~~----------------~------------ 204 (462)
.+.+++|||+|.+.++....+ +++.. .++|+|.++| |... .
T Consensus 102 ~~~~~~pDv~i~~~g~~~~~~--~~~~~---~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~ 176 (419)
T cd03806 102 ALLKLVPDIFIDTMGYPFTYP--LVRLL---GGCPVGAYVHYPTISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYY 176 (419)
T ss_pred HHHhcCCCEEEEcCCcccHHH--HHHHh---cCCeEEEEecCCcchHHHHHHHhhccccccCccchhccchHHHHHHHHH
Confidence 344568999999887765443 33332 3789998887 2100 0
Q ss_pred -----CcccccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCC
Q 012492 205 -----HPTWFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEG 279 (462)
Q Consensus 205 -----~~~~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~ 279 (462)
...|..+.+|.++++|+..++.+.+.+...+++.++++|++...+.+. .. ....+.+.++.+|+-..
T Consensus 177 ~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~-~~-------~~~~~~~~il~vgr~~~ 248 (419)
T cd03806 177 RLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKL-PL-------DEKTRENQILSIAQFRP 248 (419)
T ss_pred HHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhccc-cc-------ccccCCcEEEEEEeecC
Confidence 001224578999999999998887754333578999999986544321 11 01233455555554444
Q ss_pred CccHHHHHHHHHHhhhcccCC--CCCceEEEEccCC-----H---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcch
Q 012492 280 MGPVKETAMALGESLLDKETG--RPIGQLIIICGRN-----R---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDC 347 (462)
Q Consensus 280 ~~~~~~~l~~l~~~l~~~~~~--~~~~~~lvv~G~~-----~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~ 347 (462)
.|+...+++++. .+.+..+. .++++++++++.. . ++++..+++++.++|+|.|++ +++..+|+.||+
T Consensus 249 ~K~~~~li~A~~-~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv 327 (419)
T cd03806 249 EKNHPLQLRAFA-KLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASI 327 (419)
T ss_pred CCCHHHHHHHHH-HHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeE
Confidence 556666666553 44432110 1347766554421 1 244455566788899999996 789999999999
Q ss_pred heecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHH----CCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 012492 348 IITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD----NGAGVFTRSPKETARIVTEWFSTKTDELKRMSE 419 (462)
Q Consensus 348 vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~----~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~ 419 (462)
+|.++. |.+++|||++|+|+|+++..+..+ .+++ ...|+++.++++++++|.++++++++.++.|++
T Consensus 328 ~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~-----~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~~~ 402 (419)
T cd03806 328 GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL-----DIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRIRR 402 (419)
T ss_pred EEECCccCCcccHHHHHHHcCCcEEEEcCCCCch-----heeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 998763 899999999999999988643221 2343 457888889999999999999445566777777
Q ss_pred HHHhhcCCcHHHHHH
Q 012492 420 NALKLAQPEAVVDIV 434 (462)
Q Consensus 420 ~a~~~~~~~~~~~ia 434 (462)
++++..+.++++...
T Consensus 403 ~~~~~~~~fs~~~f~ 417 (419)
T cd03806 403 AARSSVKRFSDEEFE 417 (419)
T ss_pred HHHHHHHhhCHHHhc
Confidence 777777777777653
No 60
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.88 E-value=4e-21 Score=194.11 Aligned_cols=270 Identities=14% Similarity=0.155 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC--------C---Cccc----------
Q 012492 150 AYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT--------C---HPTW---------- 208 (462)
Q Consensus 150 ~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~--------~---~~~~---------- 208 (462)
..+.+.+.+.+++.++|+|+++++..... ...+. .++|+|.-.+|... . ...|
T Consensus 90 ~~~~~~l~~~~~~~~~D~v~~~~~~~~~~--~~~~~----~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
T TIGR03087 90 RRLARWVNALLAAEPVDAIVVFSSAMAQY--VTPHV----RGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLL 163 (397)
T ss_pred HHHHHHHHHHHhhCCCCEEEEecccccee--ccccc----cCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 34556777889999999999987544321 11111 37898866565310 0 0011
Q ss_pred -----ccCCCcEEEEcCHHHHHHHHHcC-CCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCcc
Q 012492 209 -----FHPRVNRCYCPSKEVAKRASYFG-LEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGP 282 (462)
Q Consensus 209 -----~~~~~d~~i~~s~~~~~~l~~~g-i~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~ 282 (462)
..+.+|.++++|+..++.+.+.+ .+..++.+++|+++.+++.+.... . ..++++.++++++|+....++
T Consensus 164 ~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~---~--~~~~~~~~~ilf~G~l~~~k~ 238 (397)
T TIGR03087 164 AYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDY---P--NPYPPGKRVLVFTGAMDYWPN 238 (397)
T ss_pred HHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccc---c--CCCCCCCcEEEEEEecCCccC
Confidence 23468999999999998887653 455789999999998765532111 0 112334555665554433444
Q ss_pred HHHHHH---HHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecC----C-h
Q 012492 283 VKETAM---ALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKA----G-P 354 (462)
Q Consensus 283 ~~~~l~---~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~s----g-~ 354 (462)
...++. .+...+.+ ..|+++++++ |.+.. +.++++....+|+|.|+++++..+|+.||++|.++ | +
T Consensus 239 ~~~l~~~~~~~~~~l~~---~~p~~~l~iv-G~g~~--~~~~~l~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~ 312 (397)
T TIGR03087 239 IDAVVWFAERVFPAVRA---RRPAAEFYIV-GAKPS--PAVRALAALPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQ 312 (397)
T ss_pred HHHHHHHHHHHHHHHHH---HCCCcEEEEE-CCCCh--HHHHHhccCCCeEEeeecCCHHHHHHhCCEEEecccccCCcc
Confidence 433322 33333433 2478886654 54432 23444455678999999999999999999999775 2 6
Q ss_pred hhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeee-CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHH
Q 012492 355 GTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFT-RSPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVD 432 (462)
Q Consensus 355 ~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~-~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ 432 (462)
++++|||++|+|+|+++..... .....|.|+++ .++++++++|.+++ +|++.+++|++++++++ +.++|+.
T Consensus 313 ~~~lEAma~G~PVV~t~~~~~~------i~~~~~~g~lv~~~~~~la~ai~~ll-~~~~~~~~~~~~ar~~v~~~fsw~~ 385 (397)
T TIGR03087 313 NKVLEAMAMAKPVVASPEAAEG------IDALPGAELLVAADPADFAAAILALL-ANPAEREELGQAARRRVLQHYHWPR 385 (397)
T ss_pred cHHHHHHHcCCCEEecCccccc------ccccCCcceEeCCCHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 6799999999999999863211 11224556655 58999999999999 79999999999999987 5799999
Q ss_pred HHHHHHHHHhc
Q 012492 433 IVKDIHDLAAQ 443 (462)
Q Consensus 433 ia~~i~~l~~~ 443 (462)
+++.+++++++
T Consensus 386 ~~~~~~~~l~~ 396 (397)
T TIGR03087 386 NLARLDALLEQ 396 (397)
T ss_pred HHHHHHHHhcC
Confidence 99999998864
No 61
>PRK14099 glycogen synthase; Provisional
Probab=99.88 E-value=2.3e-20 Score=191.95 Aligned_cols=266 Identities=17% Similarity=0.158 Sum_probs=177.7
Q ss_pred HhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC--C-----------c-----------------cccc
Q 012492 161 MEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC--H-----------P-----------------TWFH 210 (462)
Q Consensus 161 ~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~--~-----------~-----------------~~~~ 210 (462)
.+++|||||++....+.++.. ++... ..++|+|..+|+.... . + .+..
T Consensus 130 ~~~~pDIiH~Hdw~~~l~~~~-l~~~~-~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i 207 (485)
T PRK14099 130 PGFVPDIVHAHDWQAGLAPAY-LHYSG-RPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGL 207 (485)
T ss_pred cCCCCCEEEECCcHHHHHHHH-HHhCC-CCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHH
Confidence 468999999988444443332 23221 1368999888875310 0 0 0112
Q ss_pred CCCcEEEEcCHHHHHHHHHc----CC------CCCcEEEcCCCCChhhhcccCC------------------hHHHHHHc
Q 012492 211 PRVNRCYCPSKEVAKRASYF----GL------EVSQIRVFGLPIRPSFVRAVIS------------------KDNLRLEL 262 (462)
Q Consensus 211 ~~~d~~i~~s~~~~~~l~~~----gi------~~~~i~v~g~pv~~~~~~~~~~------------------~~~~r~~l 262 (462)
..+|.++++|+..++.+.+. |+ +++++.+++|+++.+.+.+..+ +..+++++
T Consensus 208 ~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~ 287 (485)
T PRK14099 208 QLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARF 287 (485)
T ss_pred HhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHc
Confidence 45789999999999888642 22 3578999999999876654222 34677889
Q ss_pred CCCC--CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH-HHHHHHhhc--cCCCCe-EEeccch
Q 012492 263 QMDP--ILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR-TLASTLQSE--EWKIPV-KVRGFET 336 (462)
Q Consensus 263 ~l~~--~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-~l~~~~~~~--~~~~~V-~~~g~~~ 336 (462)
|++. +.++++++|+....|++..+++++ +.+.+ .+++++++ |.+. ++++.++++ ....++ .+.|+.+
T Consensus 288 gl~~~~~~~li~~VgRL~~~KG~d~Li~A~-~~l~~-----~~~~lviv-G~G~~~~~~~l~~l~~~~~~~v~~~~G~~~ 360 (485)
T PRK14099 288 GLDPDPDALLLGVISRLSWQKGLDLLLEAL-PTLLG-----EGAQLALL-GSGDAELEARFRAAAQAYPGQIGVVIGYDE 360 (485)
T ss_pred CCCcccCCcEEEEEecCCccccHHHHHHHH-HHHHh-----cCcEEEEE-ecCCHHHHHHHHHHHHHCCCCEEEEeCCCH
Confidence 9974 345555555545556665555554 44432 24666554 4442 333444332 123455 6899988
Q ss_pred hHHHHH-HhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHC---------CceeeeC--CHHHHH
Q 012492 337 QMEKWM-GACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN---------GAGVFTR--SPKETA 400 (462)
Q Consensus 337 ~~~~l~-~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~---------G~g~~~~--~~~~la 400 (462)
++..+| +.||+++.+|. |.+.+|||+||+|+|+++.++..+. +.+. +.|++++ |+++++
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~-----V~~~~~~~~~~~~~~G~l~~~~d~~~La 435 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADT-----VVDANEMAIATGVATGVQFSPVTADALA 435 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccce-----eecccccccccCCCceEEeCCCCHHHHH
Confidence 999987 57999999884 8999999999988888876432221 2221 4577764 789999
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 401 RIVTE---WFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 401 ~~i~~---ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
++|.+ ++ +|++.+++|++++. .+.++|+++++.++++.++
T Consensus 436 ~ai~~a~~l~-~d~~~~~~l~~~~~--~~~fSw~~~a~~y~~lY~~ 478 (485)
T PRK14099 436 AALRKTAALF-ADPVAWRRLQRNGM--TTDVSWRNPAQHYAALYRS 478 (485)
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHhh--hhcCChHHHHHHHHHHHHH
Confidence 99987 66 78999999999886 4679999999999887653
No 62
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.88 E-value=5.5e-21 Score=187.23 Aligned_cols=297 Identities=20% Similarity=0.237 Sum_probs=165.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcC--Ccchh
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHST--SPKWI 140 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~--~~~~~ 140 (462)
|||+|.+.+.|.||.+++.+||++| +||+ +.+++.+.. ...+...+. . ..++...+... .....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~-v~~~~~~~~-------~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~ 66 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHE-VTFITSGPA-------PEFLKPRFP--V--REIPGLGPIQENGRLDRW 66 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCc-eEEEEcCCc-------HHHhccccC--E--EEccCceEeccCCccchH
Confidence 8999999999999999999999999 3652 333333211 111111010 0 00111111100 00001
Q ss_pred hHHHHH----HHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC-cccccCCCcE
Q 012492 141 HSCYLA----AMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH-PTWFHPRVNR 215 (462)
Q Consensus 141 ~~~~~~----~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~-~~~~~~~~d~ 215 (462)
.+.... .......+++.+.+++++||+||+++.... ..+++. .++|++.+.++....+ ..++... .
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~~~~---~~aa~~----~giP~i~i~~~~~~~~~~~~~~~~--~ 137 (318)
T PF13528_consen 67 KTVRNNIRWLARLARRIRREIRWLREFRPDLVISDFYPLA---ALAARR----AGIPVIVISNQYWFLHPNFWLPWD--Q 137 (318)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcChHHH---HHHHHh----cCCCEEEEEehHHcccccCCcchh--h
Confidence 111110 011234556778899999999999986653 345554 4899998776553222 1111110 0
Q ss_pred EEEcCHHHHHHHH-HcCCCCCcEEEcCC---CCChhhhcccCChHHHH-HHcCC-CCCCcEEEEEeCCCCCccHHHHHHH
Q 012492 216 CYCPSKEVAKRAS-YFGLEVSQIRVFGL---PIRPSFVRAVISKDNLR-LELQM-DPILPAVLLMGGGEGMGPVKETAMA 289 (462)
Q Consensus 216 ~i~~s~~~~~~l~-~~gi~~~~i~v~g~---pv~~~~~~~~~~~~~~r-~~l~l-~~~~~~iLv~gG~~~~~~~~~~l~~ 289 (462)
......+.+. +..+++.+..+.+. +........ .....++ +.... +.+.+.||++.|+.+.+ +++..
T Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~iLv~~gg~~~~---~~~~~ 210 (318)
T PF13528_consen 138 ---DFGRLIERYIDRYHFPPADRRLALSFYPPLPPFFRVP-FVGPIIRPEIRELPPEDEPKILVYFGGGGPG---DLIEA 210 (318)
T ss_pred ---hHHHHHHHhhhhccCCcccceecCCcccccccccccc-ccCchhcccccccCCCCCCEEEEEeCCCcHH---HHHHH
Confidence 0001111111 11122222221111 111110000 0000011 11111 23456788887776654 33333
Q ss_pred HHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccc-hhHHHHHHhcchheecCChhhHHHHHHhCCCEE
Q 012492 290 LGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE-TQMEKWMGACDCIITKAGPGTIAEALIRGLPII 368 (462)
Q Consensus 290 l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~-~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI 368 (462)
+ +.+ ++.+++++ |..... ....||++.++. +++.++|+.||++|+++|.+|++||+++|+|+|
T Consensus 211 l-~~~-------~~~~~~v~-g~~~~~-------~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l 274 (318)
T PF13528_consen 211 L-KAL-------PDYQFIVF-GPNAAD-------PRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPAL 274 (318)
T ss_pred H-HhC-------CCCeEEEE-cCCccc-------ccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEE
Confidence 2 333 45566665 766310 115799999998 899999999999999999999999999999999
Q ss_pred EecCCC-CccccchHHHHHCCceeeeC----CHHHHHHHHHH
Q 012492 369 LNDYIP-GQEKGNVPYVVDNGAGVFTR----SPKETARIVTE 405 (462)
Q Consensus 369 ~~~~~~-~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ 405 (462)
+.|..+ .+|..|++.+.+.|++..++ +++.+.++|++
T Consensus 275 ~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 275 VIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLER 316 (318)
T ss_pred EEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhc
Confidence 999863 56778999999999999876 45566665554
No 63
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=99.87 E-value=5.3e-21 Score=169.29 Aligned_cols=169 Identities=33% Similarity=0.575 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhHHHHHHHHHHHHHH
Q 012492 76 HRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYYAKE 155 (462)
Q Consensus 76 h~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (462)
|.++|.||+++|+++.++..++.+.|++....++....+.+.|..++++.++|+..|+.+..................++
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~D~~~~~~p~~~~~~~~~Y~~~~~~~~ly~~~y~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVVDFLEEASPWLRRLIRKAYLFMVRHAPLYGWLYRWTDKRRPRSKFLSALSRLFARR 80 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEehHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 88999999999998533467899999998767766667788899999888999988887654444333444456677789
Q ss_pred HHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHHHHHHHcCCCCC
Q 012492 156 VEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVAKRASYFGLEVS 235 (462)
Q Consensus 156 l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~~~l~~~gi~~~ 235 (462)
|.++|++++||+|||+||+.+.+++..+|.++...++|+++++||+...|+.|+++.+|++++.|+++++.+.+.|++++
T Consensus 81 l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H~~W~~~~~D~y~Vase~~~~~l~~~Gi~~~ 160 (169)
T PF06925_consen 81 LIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVHPFWIHPGVDRYFVASEEVKEELIERGIPPE 160 (169)
T ss_pred HHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCCcCeecCCCCEEEECCHHHHHHHHHcCCChh
Confidence 99999999999999999998776455455544323799999999996569999999999999999999999999999999
Q ss_pred cEEEcCCCC
Q 012492 236 QIRVFGLPI 244 (462)
Q Consensus 236 ~i~v~g~pv 244 (462)
+|.++|.||
T Consensus 161 ~I~vtGiPV 169 (169)
T PF06925_consen 161 RIHVTGIPV 169 (169)
T ss_pred HEEEeCccC
Confidence 999999986
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.87 E-value=5.4e-20 Score=182.30 Aligned_cols=254 Identities=18% Similarity=0.114 Sum_probs=170.4
Q ss_pred HHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC----------cccccCCCcEEEEcCHHHHHHHHH
Q 012492 160 LMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH----------PTWFHPRVNRCYCPSKEVAKRASY 229 (462)
Q Consensus 160 l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~----------~~~~~~~~d~~i~~s~~~~~~l~~ 229 (462)
++..+||+|+++++............ .++|.+...|+..... ..+..+.+|.+++.|+...+.+..
T Consensus 79 ~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~ 154 (357)
T cd03795 79 KLAKKADVIHLHFPNPLADLALLLLP----RKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPV 154 (357)
T ss_pred hcCCCCCEEEEecCcchHHHHHHHhc----cCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHH
Confidence 66889999999887654332222111 3678887666432110 123346689999999999887766
Q ss_pred cCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEE
Q 012492 230 FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIII 309 (462)
Q Consensus 230 ~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv 309 (462)
.+-...++.+++|+++...+.... .... .....+.+.+.++.+|+....++...+++++ +.+. +++++ +
T Consensus 155 ~~~~~~~~~~i~~gi~~~~~~~~~-~~~~-~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~-~~l~-------~~~l~-i 223 (357)
T cd03795 155 LRRFRDKVRVIPLGLDPARYPRPD-ALEE-AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAA-AALP-------DAPLV-I 223 (357)
T ss_pred hcCCccceEEecCCCChhhcCCcc-hhhh-HhhcCCCCCcEEEEecccccccCHHHHHHHH-Hhcc-------CcEEE-E
Confidence 543347899999999876554321 1111 2233344556555555444445555555444 4442 45554 4
Q ss_pred ccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecC------ChhhHHHHHHhCCCEEEecCCCCccc
Q 012492 310 CGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKA------GPGTIAEALIRGLPIILNDYIPGQEK 378 (462)
Q Consensus 310 ~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~s------g~~t~~EAla~G~PvI~~~~~~~~~~ 378 (462)
+|.+. .+.+.+++++...+|.+.|++ +++.++|+.||+++.+| .|.+++|||++|+|+|+++.++..
T Consensus 224 ~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~-- 301 (357)
T cd03795 224 VGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG-- 301 (357)
T ss_pred EeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch--
Confidence 55554 244455566778899999998 46889999999999765 278999999999999999865432
Q ss_pred cchHHHHH-CCceeee--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CcHHHHHH
Q 012492 379 GNVPYVVD-NGAGVFT--RSPKETARIVTEWFSTKTDELKRMSENALKLAQ-PEAVVDIV 434 (462)
Q Consensus 379 ~n~~~l~~-~G~g~~~--~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~-~~~~~~ia 434 (462)
+.+.+ .+.|+.+ .|+++++++|..++ +|++.+++|++++++.+. .++++.++
T Consensus 302 ---~~i~~~~~~g~~~~~~d~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 302 ---SYVNLHGVTGLVVPPGDPAALAEAIRRLL-EDPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred ---hHHhhCCCceEEeCCCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 23443 5567666 47999999999999 799999999999999874 46666653
No 65
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.87 E-value=5e-20 Score=185.66 Aligned_cols=336 Identities=13% Similarity=0.078 Sum_probs=187.9
Q ss_pred CeEEEEecC-CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhh
Q 012492 63 KNVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 141 (462)
Q Consensus 63 ~kIli~~~~-~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 141 (462)
||||.+..+ -+||....+..|++.|.++|++ +.++-.... .+.. ......|....+..+-+....+-. ..
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~---~~i~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~ 71 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLA---SHFVYGYGK-GGKE-SVSHQNYPQVIKHTPRMTAMANIA----LF 71 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCe---EEEEEecCC-Cccc-ccccCCcceEEEecccHHHHHHHH----HH
Confidence 799988633 2369999999999999999864 333311110 1110 000000100000000000000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhhCCCEEEECCcccc--hHHHHH-----HHHcCCCCCCeEEEEecCCCCC----Cc---
Q 012492 142 SCYLAAMAAYYAKEVEAGL-MEYKPDIIISVHPLMQ--HIPLWV-----LKWQGLQKKVIFVTVITDLNTC----HP--- 206 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l-~~~kPDvVi~~~~~~~--~~~~~~-----~~~~~~~~~iP~v~~~~d~~~~----~~--- 206 (462)
+.+. .-......++.+++ ++++|||||.+..... .+.... .+.. ..++|+|+..||+... |.
T Consensus 72 ~~~~-~~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~--~~~~piV~TlHd~~~~tg~c~~~~~ 148 (405)
T PRK10125 72 RLFN-RDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNH--KPDVTLVWTLHDHWSVTGRCAFTDG 148 (405)
T ss_pred Hhcc-hhhcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcc--cCCCCEEEecccccccCCCcCCCcc
Confidence 0000 00112223444445 6999999998874432 221111 1122 2479999999997631 10
Q ss_pred --ccc----------------------------------cCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhc
Q 012492 207 --TWF----------------------------------HPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVR 250 (462)
Q Consensus 207 --~~~----------------------------------~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~ 250 (462)
.|. .+..+.++++|+..++.+... +...++.+++|+++.....
T Consensus 149 C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~-~~~~~i~vI~NGid~~~~~ 227 (405)
T PRK10125 149 CEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSL-YGPGRCRIINNGIDMATEA 227 (405)
T ss_pred cccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHH-cCCCCEEEeCCCcCccccc
Confidence 010 012357889999998877643 3457899999999854221
Q ss_pred ccCChHHHHHHcCCCCCCcEEEEEeCCC--CCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCC
Q 012492 251 AVISKDNLRLELQMDPILPAVLLMGGGE--GMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIP 328 (462)
Q Consensus 251 ~~~~~~~~r~~l~l~~~~~~iLv~gG~~--~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~ 328 (462)
........+ .+++++.++++|+.. ..++...+++++ ..+. ++++++ +.|.+... ...+
T Consensus 228 ~~~~~~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~-~~l~------~~~~L~-ivG~g~~~--------~~~~ 287 (405)
T PRK10125 228 ILAELPPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREM-MALG------DKIELH-TFGKFSPF--------TAGN 287 (405)
T ss_pred ccccccccc----cCCCCCEEEEEEeccccCCccHHHHHHHH-HhCC------CCeEEE-EEcCCCcc--------cccc
Confidence 100111111 124556666666533 234456666555 3332 356654 45654321 1246
Q ss_pred eEEeccc---hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHH
Q 012492 329 VKVRGFE---TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKET 399 (462)
Q Consensus 329 V~~~g~~---~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~l 399 (462)
+.+.|+. .++.++|+.||++|.+|. |++++|||+||+|||+++.++- ..+++.+.|++++ |++++
T Consensus 288 v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~------~Eiv~~~~G~lv~~~d~~~L 361 (405)
T PRK10125 288 VVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAA------REVLQKSGGKTVSEEEVLQL 361 (405)
T ss_pred eEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCCh------HHhEeCCcEEEECCCCHHHH
Confidence 8888875 568899999999999884 9999999999999999997542 2345556777775 67777
Q ss_pred HHHHHHHhcCCHHHHHH-H---HHHHHhh-cCCcHHHHHHHHHHHHHhc
Q 012492 400 ARIVTEWFSTKTDELKR-M---SENALKL-AQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 400 a~~i~~ll~~d~~~~~~-m---~~~a~~~-~~~~~~~~ia~~i~~l~~~ 443 (462)
++.+ +++.+++ + .+++++. .+.++++.+++.++++.++
T Consensus 362 a~~~------~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 362 AQLS------KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred Hhcc------CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7632 4444433 2 2335544 4679999999999998753
No 66
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.86 E-value=2.9e-20 Score=191.87 Aligned_cols=256 Identities=18% Similarity=0.184 Sum_probs=180.8
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC-------Cc-------------------ccccCCCcEE
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC-------HP-------------------TWFHPRVNRC 216 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~-------~~-------------------~~~~~~~d~~ 216 (462)
.++|+||+++....+.....++.. .++|+|...|+.... .. .+.++.+|.+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~---~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR---RGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH---hCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 378999998754433322333322 489998877764210 00 0123568999
Q ss_pred EEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhc
Q 012492 217 YCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLD 296 (462)
Q Consensus 217 i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~ 296 (462)
++.|+..++...+.|++++++.+++|+++.+.+.+. ... ..+++.++++.+|+....+++..++.++ +.+.+
T Consensus 249 i~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~-~~~------~~~~~~~~i~~vGrl~~~Kg~~~li~a~-~~l~~ 320 (475)
T cd03813 249 TTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPA-RRA------RPEKEPPVVGLIGRVVPIKDIKTFIRAA-AIVRK 320 (475)
T ss_pred EecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCc-ccc------ccCCCCcEEEEEeccccccCHHHHHHHH-HHHHH
Confidence 999999988877889988999999999987655431 110 1234455555555544456666666655 44544
Q ss_pred ccCCCCCceEEEEccCC---H----HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecC----ChhhHHHHHHhCC
Q 012492 297 KETGRPIGQLIIICGRN---R----TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKA----GPGTIAEALIRGL 365 (462)
Q Consensus 297 ~~~~~~~~~~lvv~G~~---~----~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~s----g~~t~~EAla~G~ 365 (462)
..|+++++++ |.+ . ++.+.++++++.++|+|.| .+++.++|+.||++|.+| .|++++|||++|+
T Consensus 321 ---~~p~~~l~Iv-G~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~ 395 (475)
T cd03813 321 ---KIPDAEGWVI-GPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI 395 (475)
T ss_pred ---hCCCeEEEEE-CCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC
Confidence 2477876654 443 1 2345566678889999999 678999999999999887 3899999999999
Q ss_pred CEEEecCCCCccccchHHHHHC------C-ceeee--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-cHHHHHHH
Q 012492 366 PIILNDYIPGQEKGNVPYVVDN------G-AGVFT--RSPKETARIVTEWFSTKTDELKRMSENALKLAQP-EAVVDIVK 435 (462)
Q Consensus 366 PvI~~~~~~~~~~~n~~~l~~~------G-~g~~~--~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~-~~~~~ia~ 435 (462)
|+|+++.++. ..+++. | .|+++ .|+++++++|.+++ +|++.+++|++++++.+.. ++++.+++
T Consensus 396 PVVatd~g~~------~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll-~~~~~~~~~~~~a~~~v~~~~s~~~~~~ 468 (475)
T cd03813 396 PVVATDVGSC------RELIEGADDEALGPAGEVVPPADPEALARAILRLL-KDPELRRAMGEAGRKRVERYYTLERMID 468 (475)
T ss_pred CEEECCCCCh------HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999886432 223333 2 56665 47999999999999 7999999999999987765 68899999
Q ss_pred HHHHHH
Q 012492 436 DIHDLA 441 (462)
Q Consensus 436 ~i~~l~ 441 (462)
.+.++.
T Consensus 469 ~y~~lY 474 (475)
T cd03813 469 SYRRLY 474 (475)
T ss_pred HHHHHh
Confidence 988865
No 67
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.86 E-value=4.1e-19 Score=174.64 Aligned_cols=311 Identities=12% Similarity=-0.010 Sum_probs=193.0
Q ss_pred CeEEEEecC-------CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcC
Q 012492 63 KNVLILMSD-------TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHST 135 (462)
Q Consensus 63 ~kIli~~~~-------~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 135 (462)
|||++++.. .+||..+....|+++|.++|| +|.+...... ....... . + ....+. .
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~---~V~v~~~~~~--~~~~~~~-~-~---------~~~~~~-~ 63 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGH---EVTLFASGDS--KTAAPLV-P-V---------VPEPLR-L 63 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCc---eEEEEecCCC--Cccccee-e-c---------cCCCcc-c
Confidence 799998743 456999999999999999875 4444422111 0000000 0 0 000000 0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcc---cccCC
Q 012492 136 SPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPT---WFHPR 212 (462)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~---~~~~~ 212 (462)
. . . ............+.+.+++.+||+|+++....... +++. .++|+|...|+....... +....
T Consensus 64 ~--~-~--~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~---~~~~----~~~~~v~~~h~~~~~~~~~~~~~~~~ 131 (335)
T cd03802 64 D--A-P--GRDRAEAEALALAERALAAGDFDIVHNHSLHLPLP---FARP----LPVPVVTTLHGPPDPELLKLYYAARP 131 (335)
T ss_pred c--c-c--hhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh---hhcc----cCCCEEEEecCCCCcccchHHHhhCc
Confidence 0 0 0 00011233445667889999999999988665432 2332 478998887765421111 12244
Q ss_pred CcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHH
Q 012492 213 VNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGE 292 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~ 292 (462)
.+.++++|+...+.+... .++.+++|+++.+.+.+. +.+++.++++|.....++...++.. ++
T Consensus 132 ~~~~~~~s~~~~~~~~~~----~~~~vi~ngvd~~~~~~~------------~~~~~~i~~~Gr~~~~Kg~~~li~~-~~ 194 (335)
T cd03802 132 DVPFVSISDAQRRPWPPL----PWVATVHNGIDLDDYPFR------------GPKGDYLLFLGRISPEKGPHLAIRA-AR 194 (335)
T ss_pred CCeEEEecHHHHhhcccc----cccEEecCCcChhhCCCC------------CCCCCEEEEEEeeccccCHHHHHHH-HH
Confidence 577888898877655432 678999999987655420 1234556666655444555554443 22
Q ss_pred hhhcccCCCCCceEEEEccCCH--H-HHHHHhhcc-CCCCeEEeccc--hhHHHHHHhcchheecCC-----hhhHHHHH
Q 012492 293 SLLDKETGRPIGQLIIICGRNR--T-LASTLQSEE-WKIPVKVRGFE--TQMEKWMGACDCIITKAG-----PGTIAEAL 361 (462)
Q Consensus 293 ~l~~~~~~~~~~~~lvv~G~~~--~-l~~~~~~~~-~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg-----~~t~~EAl 361 (462)
. .++++++ +|.+. . ......+.. ..++|.|.|++ +++..+|+.+|+++.++. |.+++|||
T Consensus 195 ~--------~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAm 265 (335)
T cd03802 195 R--------AGIPLKL-AGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAM 265 (335)
T ss_pred h--------cCCeEEE-EeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHH
Confidence 2 3566554 45442 1 222333322 46799999998 467899999999997652 78999999
Q ss_pred HhCCCEEEecCCCCccccchHHHHHCC-ceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcHHHHHHHHHHH
Q 012492 362 IRGLPIILNDYIPGQEKGNVPYVVDNG-AGVFTRSPKETARIVTEWFSTKTDELKRMSENALKL-AQPEAVVDIVKDIHD 439 (462)
Q Consensus 362 a~G~PvI~~~~~~~~~~~n~~~l~~~G-~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~-~~~~~~~~ia~~i~~ 439 (462)
++|+|+|+++.++.. .+.+.| .|+++++++++++++..++ ..+. +++++. .+.++++.+++.+.+
T Consensus 266 a~G~PvI~~~~~~~~------e~i~~~~~g~l~~~~~~l~~~l~~l~-~~~~------~~~~~~~~~~~s~~~~~~~~~~ 332 (335)
T cd03802 266 ACGTPVIAFRRGAVP------EVVEDGVTGFLVDSVEELAAAVARAD-RLDR------AACRRRAERRFSAARMVDDYLA 332 (335)
T ss_pred hcCCCEEEeCCCCch------hheeCCCcEEEeCCHHHHHHHHHHHh-ccHH------HHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999975332 244455 7888888999999999987 3331 223332 367899999999998
Q ss_pred HH
Q 012492 440 LA 441 (462)
Q Consensus 440 l~ 441 (462)
+.
T Consensus 333 ~y 334 (335)
T cd03802 333 LY 334 (335)
T ss_pred Hh
Confidence 75
No 68
>PLN00142 sucrose synthase
Probab=99.86 E-value=5.2e-20 Score=194.05 Aligned_cols=277 Identities=13% Similarity=0.145 Sum_probs=177.6
Q ss_pred HHHHHHHHH-Hhh--CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC---C------------c-------
Q 012492 152 YAKEVEAGL-MEY--KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC---H------------P------- 206 (462)
Q Consensus 152 ~~~~l~~~l-~~~--kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~---~------------~------- 206 (462)
+...+.+.+ ++. +||+||+++...+..+..+++. .+||.+.+.|..... + .
T Consensus 393 f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~----lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~a 468 (815)
T PLN00142 393 FAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHK----LGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTA 468 (815)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHH----hCCCEEEEcccchhhhccccCCcccccchhhhhhhchHH
Confidence 333444444 333 5999999976655544444443 589999887743210 0 0
Q ss_pred -ccccCCCcEEEEcCHHHHH-------HHHH-------------cCCC--CCcEEEcCCCCChhhhcccCCh--------
Q 012492 207 -TWFHPRVNRCYCPSKEVAK-------RASY-------------FGLE--VSQIRVFGLPIRPSFVRAVISK-------- 255 (462)
Q Consensus 207 -~~~~~~~d~~i~~s~~~~~-------~l~~-------------~gi~--~~~i~v~g~pv~~~~~~~~~~~-------- 255 (462)
.+....+|.+++.+..... .+.. .|++ ..++.+++++++...+.+....
T Consensus 469 E~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~ 548 (815)
T PLN00142 469 DLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLH 548 (815)
T ss_pred HHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhc
Confidence 0112346777777765542 1111 1332 4588899999987644421111
Q ss_pred ----------HHHHHHcCC--CCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccC-CH--------
Q 012492 256 ----------DNLRLELQM--DPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGR-NR-------- 314 (462)
Q Consensus 256 ----------~~~r~~l~l--~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~-~~-------- 314 (462)
+..++.+++ ++++++|+.+|+....|++..+++++. .+.+. .+++++++++|. ..
T Consensus 549 n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a-~l~~l---~~~~~LVIVGgg~d~~~s~d~ee 624 (815)
T PLN00142 549 PSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYG-KNKRL---RELVNLVVVGGFIDPSKSKDREE 624 (815)
T ss_pred ccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHH-HHHHh---CCCcEEEEEECCccccccccHHH
Confidence 112345665 455677766666656677766666654 34321 346777766554 10
Q ss_pred -----HHHHHHhhccCCCCeEEeccc------hhHHHHHH-hcchheecCC----hhhHHHHHHhCCCEEEecCCCCccc
Q 012492 315 -----TLASTLQSEEWKIPVKVRGFE------TQMEKWMG-ACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEK 378 (462)
Q Consensus 315 -----~l~~~~~~~~~~~~V~~~g~~------~~~~~l~~-~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~ 378 (462)
++.+.++++++.++|.|.|.. +++..+++ ++|+||.+|. |.+++|||+||+|+|+++.++.
T Consensus 625 ~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~--- 701 (815)
T PLN00142 625 IAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGP--- 701 (815)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCH---
Confidence 133445667888999999864 34556666 4799999873 9999999999999999986432
Q ss_pred cchHHHHHCC-ceeeeC--CHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHh
Q 012492 379 GNVPYVVDNG-AGVFTR--SPKETARIVTEWFS---TKTDELKRMSENALKLA-QPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 379 ~n~~~l~~~G-~g~~~~--~~~~la~~i~~ll~---~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~l~~ 442 (462)
..++.+| .|++++ ++++++++|.+++. +|++.+++|++++++.+ +.++|+.+++.++++..
T Consensus 702 ---~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~ 769 (815)
T PLN00142 702 ---AEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGG 769 (815)
T ss_pred ---HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2244444 688775 68899988875431 69999999999998876 67999999999999873
No 69
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.86 E-value=3.7e-19 Score=176.80 Aligned_cols=254 Identities=13% Similarity=0.135 Sum_probs=169.7
Q ss_pred HhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc--------------ccccCCCcEEEEcCHHHHHH
Q 012492 161 MEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP--------------TWFHPRVNRCYCPSKEVAKR 226 (462)
Q Consensus 161 ~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~--------------~~~~~~~d~~i~~s~~~~~~ 226 (462)
++.++|+|++.++.. ......++. .+.|++...|+...... .+..+.+|.+++.|+..++.
T Consensus 83 ~~~~~~~i~~~~~~~-~~~~~~~~~----~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 157 (363)
T cd04955 83 VKRDIDHVHALGPAI-APFLPLLRL----KGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEY 157 (363)
T ss_pred ccCCeEEEEecCccH-HHHHHHHHh----cCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHHHH
Confidence 456677777666554 221222332 37888877776431110 11235679999999999988
Q ss_pred HHH-cCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCce
Q 012492 227 ASY-FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQ 305 (462)
Q Consensus 227 l~~-~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 305 (462)
+.+ .+.+ . .+++|+++...... +...+.+++++++ +.++++|+....++...+++++ +.+. .+++
T Consensus 158 ~~~~~~~~--~-~~i~ngv~~~~~~~---~~~~~~~~~~~~~-~~i~~~G~~~~~Kg~~~li~a~-~~l~------~~~~ 223 (363)
T cd04955 158 LKEKYGRD--S-TYIPYGADHVVSSE---EDEILKKYGLEPG-RYYLLVGRIVPENNIDDLIEAF-SKSN------SGKK 223 (363)
T ss_pred HHHhcCCC--C-eeeCCCcChhhcch---hhhhHHhcCCCCC-cEEEEEecccccCCHHHHHHHH-Hhhc------cCce
Confidence 854 4543 2 78999987654321 2334556666544 4566666555556666666555 3442 2466
Q ss_pred EEEEccCC---HHHHHHHh-hccCCCCeEEeccc--hhHHHHHHhcchheecCC-----hhhHHHHHHhCCCEEEecCCC
Q 012492 306 LIIICGRN---RTLASTLQ-SEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG-----PGTIAEALIRGLPIILNDYIP 374 (462)
Q Consensus 306 ~lvv~G~~---~~l~~~~~-~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg-----~~t~~EAla~G~PvI~~~~~~ 374 (462)
++++ |.+ ..+.+.+. .++..++|++.|++ +++.++|+.||+++.+|. |++++|||++|+|+|+++.++
T Consensus 224 l~iv-G~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~ 302 (363)
T cd04955 224 LVIV-GNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF 302 (363)
T ss_pred EEEE-cCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCc
Confidence 6554 443 23444554 45677899999998 578899999999987663 789999999999999998764
Q ss_pred CccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHh
Q 012492 375 GQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQ-PEAVVDIVKDIHDLAA 442 (462)
Q Consensus 375 ~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~-~~~~~~ia~~i~~l~~ 442 (462)
..+. +. . .|..+...+.+++++.+++ +|++.+.+|++++++... .++|+.+++.+.++++
T Consensus 303 ~~e~-----~~-~-~g~~~~~~~~l~~~i~~l~-~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 303 NREV-----LG-D-KAIYFKVGDDLASLLEELE-ADPEEVSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred ccee-----ec-C-CeeEecCchHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 3322 22 2 3444444334999999999 799999999999998875 5899999999998753
No 70
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.86 E-value=1.6e-19 Score=185.74 Aligned_cols=258 Identities=13% Similarity=0.108 Sum_probs=177.0
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCC--C----CCcc-c---------ccCCCcEEEEcCH
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLN--T----CHPT-W---------FHPRVNRCYCPSK 221 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~--~----~~~~-~---------~~~~~d~~i~~s~ 221 (462)
+.|...++||+|++.+.....++. +.. .++|.+.++|.-. . .+.. | ....+|.++++|+
T Consensus 205 ~~L~~~~~di~i~dr~~~~~~~~~--~~~---~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~ 279 (500)
T TIGR02918 205 KQLNLTKKDIIILDRSTGIGQAVL--ENK---GPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATD 279 (500)
T ss_pred HHHhCCCCCEEEEcCCcccchHHH--hcC---CCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCH
Confidence 444567899999999776554322 221 4788877776311 0 0111 1 1234799999999
Q ss_pred HHHHHHHH----cCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcc
Q 012492 222 EVAKRASY----FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDK 297 (462)
Q Consensus 222 ~~~~~l~~----~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~ 297 (462)
..++.+.+ .+.+..++.++++++.+.+..+ .. ..+...++.+|+....|++..+++++. .+.+
T Consensus 280 ~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~----~~-------~r~~~~il~vGrl~~~Kg~~~li~A~~-~l~~- 346 (500)
T TIGR02918 280 IQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYP----EQ-------ERKPFSIITASRLAKEKHIDWLVKAVV-KAKK- 346 (500)
T ss_pred HHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCc----cc-------ccCCeEEEEEeccccccCHHHHHHHHH-HHHh-
Confidence 88777654 2334578999999875443321 00 112233444444444466666666654 4443
Q ss_pred cCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEe
Q 012492 298 ETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILN 370 (462)
Q Consensus 298 ~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~ 370 (462)
..|++++.+ .|.+. .+++.++++++.++|.|.|+. ++.++|+.||++|++|. |++++|||+||+|+|++
T Consensus 347 --~~p~~~l~i-~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~ 422 (500)
T TIGR02918 347 --SVPELTFDI-YGEGGEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGF 422 (500)
T ss_pred --hCCCeEEEE-EECchhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEe
Confidence 257887654 45554 355666777788899999986 78999999999999883 89999999999999999
Q ss_pred cCCCCccccchHHHHHCCceeeeCC----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 012492 371 DYIPGQEKGNVPYVVDNGAGVFTRS----------PKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDL 440 (462)
Q Consensus 371 ~~~~~~~~~n~~~l~~~G~g~~~~~----------~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l 440 (462)
+...+ +.+.+.+...|++++. +++++++|.+++ + ++.+++|++++++.++.++++.+++.|+++
T Consensus 423 dv~~G----~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~-~~~~~~~~~~a~~~a~~fs~~~v~~~w~~l 496 (500)
T TIGR02918 423 DVNYG----NPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-N-SNDIDAFHEYSYQIAEGFLTANIIEKWKKL 496 (500)
T ss_pred cCCCC----CHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-C-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 97533 2223444446887751 778999999999 4 456899999999999999999999999998
Q ss_pred Hhc
Q 012492 441 AAQ 443 (462)
Q Consensus 441 ~~~ 443 (462)
+++
T Consensus 497 l~~ 499 (500)
T TIGR02918 497 VRE 499 (500)
T ss_pred Hhh
Confidence 864
No 71
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.86 E-value=7.6e-20 Score=184.01 Aligned_cols=267 Identities=10% Similarity=0.070 Sum_probs=169.8
Q ss_pred HHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEec-CCCCC---C-----c--------cccc-CCC
Q 012492 152 YAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVIT-DLNTC---H-----P--------TWFH-PRV 213 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~-d~~~~---~-----~--------~~~~-~~~ 213 (462)
...++.+.+++++||+|+...|+..+..-...++.. ..++ +|.++| ++... + . .|.. ..+
T Consensus 104 ~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~-k~~~-vV~tyHT~y~~Y~~~~~~g~~~~~l~~~~~~~~~r~~~ 181 (462)
T PLN02846 104 PVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKT-KFRL-VIGIVHTNYLEYVKREKNGRVKAFLLKYINSWVVDIYC 181 (462)
T ss_pred ChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHh-cCCc-EEEEECCChHHHHHHhccchHHHHHHHHHHHHHHHHhc
Confidence 346788999999999999999987654101122221 1344 665444 44211 0 0 1111 237
Q ss_pred cEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCC--CcEEEEEeCCCCCccHHHHHHHHH
Q 012492 214 NRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPI--LPAVLLMGGGEGMGPVKETAMALG 291 (462)
Q Consensus 214 d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~--~~~iLv~gG~~~~~~~~~~l~~l~ 291 (462)
|.++++|....+ +.+. +....++|+..++.+. .+. .++.++ +++ .+.++++|+....|++..+++++
T Consensus 182 d~vi~pS~~~~~-l~~~------~i~~v~GVd~~~f~~~-~~~-~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~- 250 (462)
T PLN02846 182 HKVIRLSAATQD-YPRS------IICNVHGVNPKFLEIG-KLK-LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLL- 250 (462)
T ss_pred CEEEccCHHHHH-HhhC------EEecCceechhhcCCC-ccc-HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHH-
Confidence 899999986654 4432 3333478888877642 222 333333 333 23355555555566676666665
Q ss_pred HhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHhC
Q 012492 292 ESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIRG 364 (462)
Q Consensus 292 ~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G 364 (462)
+.+.+ ..++++++ ++|+++ ++++..+++++..++ |.|+. +..++|+.+|+||.+|. |++++||||+|
T Consensus 251 ~~l~~---~~~~~~l~-ivGdGp~~~~L~~~a~~l~l~~~v-f~G~~-~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G 324 (462)
T PLN02846 251 HKHQK---ELSGLEVD-LYGSGEDSDEVKAAAEKLELDVRV-YPGRD-HADPLFHDYKVFLNPSTTDVVCTTTAEALAMG 324 (462)
T ss_pred HHHHh---hCCCeEEE-EECCCccHHHHHHHHHhcCCcEEE-ECCCC-CHHHHHHhCCEEEECCCcccchHHHHHHHHcC
Confidence 44443 13677654 456665 355556666654333 67764 55689999999999884 99999999999
Q ss_pred CCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 365 LPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 365 ~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
+|||+.+.+.+ +.+.+.+.|+.+.+++++++++.++|.+++ +.++.+++ ..++|+.+++.++++++-+
T Consensus 325 ~PVVa~~~~~~------~~v~~~~ng~~~~~~~~~a~ai~~~l~~~~---~~~~~~a~---~~~SWe~~~~~l~~~~~~~ 392 (462)
T PLN02846 325 KIVVCANHPSN------EFFKQFPNCRTYDDGKGFVRATLKALAEEP---APLTDAQR---HELSWEAATERFLRVADLD 392 (462)
T ss_pred CcEEEecCCCc------ceeecCCceEecCCHHHHHHHHHHHHccCc---hhHHHHHH---HhCCHHHHHHHHHHHhccC
Confidence 99999997532 235556678888899999999999994333 22333333 3899999999999999866
Q ss_pred CCCcc
Q 012492 445 GPLAR 449 (462)
Q Consensus 445 ~~~~~ 449 (462)
.++.+
T Consensus 393 ~~~~~ 397 (462)
T PLN02846 393 LPSSA 397 (462)
T ss_pred CcCcc
Confidence 65444
No 72
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.86 E-value=5.4e-20 Score=176.08 Aligned_cols=269 Identities=20% Similarity=0.109 Sum_probs=159.3
Q ss_pred eEEEEe---cCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchh
Q 012492 64 NVLILM---SDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 140 (462)
Q Consensus 64 kIli~~---~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 140 (462)
||+|.+ ..+|.||.+++++||++|+++|+. .+|++.- .+....+. ++. ..+. +..... ..
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~--v~f~~~~------~~~~~~~~-----i~~-~g~~--v~~~~~-~~ 63 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAE--VAFACKP------LPGDLIDL-----LLS-AGFP--VYELPD-ES 63 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCE--EEEEeCC------CCHHHHHH-----HHH-cCCe--EEEecC-CC
Confidence 678886 348999999999999999888752 3344421 11111110 100 0010 000000 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcC
Q 012492 141 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPS 220 (462)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s 220 (462)
. ...-...+.+.+++.+||+||+++...........+. ..+.+.++.|+.. ++. .+|.++..+
T Consensus 64 ~-------~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~-----~~~~l~~iDD~~~-~~~----~~D~vin~~ 126 (279)
T TIGR03590 64 S-------RYDDALELINLLEEEKFDILIVDHYGLDADWEKLIKE-----FGRKILVIDDLAD-RPH----DCDLLLDQN 126 (279)
T ss_pred c-------hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHH-----hCCeEEEEecCCC-CCc----CCCEEEeCC
Confidence 0 0112334667899999999999997544321222332 3445557788752 221 578888766
Q ss_pred HHHHHHHHHcC-CCCCcEEEcCC---CCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCcc-HHHHHHHHHHhhh
Q 012492 221 KEVAKRASYFG-LEVSQIRVFGL---PIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGP-VKETAMALGESLL 295 (462)
Q Consensus 221 ~~~~~~l~~~g-i~~~~i~v~g~---pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~-~~~~l~~l~~~l~ 295 (462)
.. .+...-.+ +|+.+..+.|. |++++|.... +....+ ++.+.||+++|+.+..+ ..+++..+. .+
T Consensus 127 ~~-~~~~~y~~~~~~~~~~l~G~~Y~~lr~eF~~~~--~~~~~~-----~~~~~iLi~~GG~d~~~~~~~~l~~l~-~~- 196 (279)
T TIGR03590 127 LG-ADASDYQGLVPANCRLLLGPSYALLREEFYQLA--TANKRR-----KPLRRVLVSFGGADPDNLTLKLLSALA-ES- 196 (279)
T ss_pred CC-cCHhHhcccCcCCCeEEecchHHhhhHHHHHhh--Hhhhcc-----cccCeEEEEeCCcCCcCHHHHHHHHHh-cc-
Confidence 54 22322223 56567788898 9999887531 111111 12345666655545443 344454443 22
Q ss_pred cccCCCCCceEEEEccCCHHHHHHHhhc-cCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCC
Q 012492 296 DKETGRPIGQLIIICGRNRTLASTLQSE-EWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIP 374 (462)
Q Consensus 296 ~~~~~~~~~~~lvv~G~~~~l~~~~~~~-~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~ 374 (462)
.+++++.+++|.+....+.+++. ....++++.++.++|.++|+.||++|+++| +|+.|++++|+|+|+.+...
T Consensus 197 -----~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~~~ 270 (279)
T TIGR03590 197 -----QINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGAAG-STSWERCCLGLPSLAICLAE 270 (279)
T ss_pred -----ccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEECCc-hHHHHHHHcCCCEEEEEecc
Confidence 13467778888864322223221 223589999999999999999999999766 89999999999999999876
Q ss_pred CccccchHH
Q 012492 375 GQEKGNVPY 383 (462)
Q Consensus 375 ~~~~~n~~~ 383 (462)
+|+ .|++.
T Consensus 271 nQ~-~~a~~ 278 (279)
T TIGR03590 271 NQQ-SNSQQ 278 (279)
T ss_pred cHH-HHhhh
Confidence 654 46543
No 73
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.86 E-value=3.6e-19 Score=184.21 Aligned_cols=276 Identities=18% Similarity=0.160 Sum_probs=178.8
Q ss_pred HHHHHHHHHh--hCCCEEEECCcccchHHHHHHHHcC--CCCCCeEEEEecCCCCCC--c---------cc---------
Q 012492 153 AKEVEAGLME--YKPDIIISVHPLMQHIPLWVLKWQG--LQKKVIFVTVITDLNTCH--P---------TW--------- 208 (462)
Q Consensus 153 ~~~l~~~l~~--~kPDvVi~~~~~~~~~~~~~~~~~~--~~~~iP~v~~~~d~~~~~--~---------~~--------- 208 (462)
.+.+.+++++ ++|||||++......++..+.+... ...++|+|..+|+..... + .|
T Consensus 116 ~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 195 (476)
T cd03791 116 SRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGL 195 (476)
T ss_pred HHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhccc
Confidence 3344455655 8999999987654444333332210 013789999888753100 0 00
Q ss_pred -----------ccCCCcEEEEcCHHHHHHHHHc----------CCCCCcEEEcCCCCChhhhcccCC-------------
Q 012492 209 -----------FHPRVNRCYCPSKEVAKRASYF----------GLEVSQIRVFGLPIRPSFVRAVIS------------- 254 (462)
Q Consensus 209 -----------~~~~~d~~i~~s~~~~~~l~~~----------gi~~~~i~v~g~pv~~~~~~~~~~------------- 254 (462)
....+|.++++|+..++.+.+. ..+..++.+++|+++...+.+..+
T Consensus 196 ~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~ 275 (476)
T cd03791 196 EFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLE 275 (476)
T ss_pred ccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccc
Confidence 1234688999999888777531 123478999999998765553211
Q ss_pred -----hHHHHHHcCCC--CCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCC-HHHHHHHhhc--c
Q 012492 255 -----KDNLRLELQMD--PILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRN-RTLASTLQSE--E 324 (462)
Q Consensus 255 -----~~~~r~~l~l~--~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~-~~l~~~~~~~--~ 324 (462)
+..++++++++ ++.++++++|+....++...+++++ +.+.+ .+++++++ |.+ ..+.+.++++ .
T Consensus 276 ~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~-~~l~~-----~~~~lvi~-G~g~~~~~~~~~~~~~~ 348 (476)
T cd03791 276 GKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEAL-PELLE-----LGGQLVIL-GSGDPEYEEALRELAAR 348 (476)
T ss_pred cHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHH-HHHHH-----cCcEEEEE-ecCCHHHHHHHHHHHHh
Confidence 34577888885 6677666666544455555555444 55543 13666554 444 3333444332 1
Q ss_pred CCCCeEE-eccc-hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHH------CCceee
Q 012492 325 WKIPVKV-RGFE-TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD------NGAGVF 392 (462)
Q Consensus 325 ~~~~V~~-~g~~-~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~------~G~g~~ 392 (462)
...++.+ .++. +.+..+|+.||+++.+|. |.+.+|||++|+|+|+++.++..+. +.+ .|.|++
T Consensus 349 ~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~-----v~~~~~~~~~~~G~~ 423 (476)
T cd03791 349 YPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADT-----VIDYNEDTGEGTGFV 423 (476)
T ss_pred CCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccce-----EeCCcCCCCCCCeEE
Confidence 2467775 4555 345689999999998873 7899999999999999987543221 222 236777
Q ss_pred eC--CHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 012492 393 TR--SPKETARIVTEWFS--TKTDELKRMSENALKLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 393 ~~--~~~~la~~i~~ll~--~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~ 442 (462)
++ +++++++++.+++. .+++.+++|++++.+ ..++|+++++.++++.+
T Consensus 424 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 424 FEGYNADALLAALRRALALYRDPEAWRKLQRNAMA--QDFSWDRSAKEYLELYR 475 (476)
T ss_pred eCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc--cCCChHHHHHHHHHHHh
Confidence 64 68999999998763 367888888887754 46999999999998875
No 74
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.85 E-value=3.6e-19 Score=180.12 Aligned_cols=161 Identities=18% Similarity=0.178 Sum_probs=124.8
Q ss_pred CCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHh
Q 012492 265 DPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGA 344 (462)
Q Consensus 265 ~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~ 344 (462)
+++++.|+++.|+.+.....+++..+++.+.. .+.++++.+|...... ....+||.+.+|++ +..+|..
T Consensus 236 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~-----~~~~~i~~~g~~~~~~-----~~~~~~v~~~~~~p-~~~ll~~ 304 (401)
T cd03784 236 AAGRPPVYVGFGSMVVRDPEALARLDVEAVAT-----LGQRAILSLGWGGLGA-----EDLPDNVRVVDFVP-HDWLLPR 304 (401)
T ss_pred hCCCCcEEEeCCCCcccCHHHHHHHHHHHHHH-----cCCeEEEEccCccccc-----cCCCCceEEeCCCC-HHHHhhh
Confidence 34678899999998765445555555555543 2457788888764211 23467999999985 7899999
Q ss_pred cchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012492 345 CDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMSEN 420 (462)
Q Consensus 345 aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~~~ 420 (462)
||++|+++|.+|++||+++|+|+|+.|...+ |..|++.+.+.|+|..+. +++.+.+++.+++ + ++.++++.+.
T Consensus 305 ~d~~I~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l-~-~~~~~~~~~~ 381 (401)
T cd03784 305 CAAVVHHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGPALDPRELTAERLAAALRRLL-D-PPSRRRAAAL 381 (401)
T ss_pred hheeeecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHh-C-HHHHHHHHHH
Confidence 9999999999999999999999999998665 567999999999998764 5788999999999 4 4566777777
Q ss_pred HHhhcCCcHHHHHHHHHHH
Q 012492 421 ALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 421 a~~~~~~~~~~~ia~~i~~ 439 (462)
++++....+..++++.|++
T Consensus 382 ~~~~~~~~g~~~~~~~ie~ 400 (401)
T cd03784 382 LRRIREEDGVPSAADVIER 400 (401)
T ss_pred HHHHHhccCHHHHHHHHhh
Confidence 7777677788888888875
No 75
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.84 E-value=3.4e-19 Score=178.30 Aligned_cols=252 Identities=15% Similarity=0.145 Sum_probs=175.0
Q ss_pred hhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc------c---------cccCCCcEEEEcCHHHHHH
Q 012492 162 EYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP------T---------WFHPRVNRCYCPSKEVAKR 226 (462)
Q Consensus 162 ~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~------~---------~~~~~~d~~i~~s~~~~~~ 226 (462)
..+||++|++.+.....+ ..... ...+.+.++|+...... . .....+|.+++.|+..++.
T Consensus 97 ~~~~diii~~~~~~~~~~--~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 171 (372)
T cd04949 97 DTKPDVFILDRPTLDGQA--LLNMK---KAAKVVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQD 171 (372)
T ss_pred CCCCCEEEECCccccchh--HHhcc---CCceEEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHH
Confidence 589999999987755431 22221 24455555553211000 0 1134678999999999888
Q ss_pred HHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceE
Q 012492 227 ASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQL 306 (462)
Q Consensus 227 l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 306 (462)
+.+..-...++.+++++++.....+. .. .+.+...++.+|+....++...++.++. .+.+ ..|++++
T Consensus 172 l~~~~~~~~~v~~ip~g~~~~~~~~~-~~--------~~~~~~~i~~vgrl~~~K~~~~li~a~~-~l~~---~~~~~~l 238 (372)
T cd04949 172 LQKQFGNYNPIYTIPVGSIDPLKLPA-QF--------KQRKPHKIITVARLAPEKQLDQLIKAFA-KVVK---QVPDATL 238 (372)
T ss_pred HHHHhCCCCceEEEcccccChhhccc-ch--------hhcCCCeEEEEEccCcccCHHHHHHHHH-HHHH---hCCCcEE
Confidence 87653333458899999876654321 00 1123345666665545566666666554 4443 2577876
Q ss_pred EEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCcccc
Q 012492 307 IIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKG 379 (462)
Q Consensus 307 lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~ 379 (462)
+++ |.+. .+.+..+++++..+|.+.|+.+++.++|+.||++|.+|. |.+++|||++|+|+|+++...+
T Consensus 239 ~i~-G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---- 313 (372)
T cd04949 239 DIY-GYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---- 313 (372)
T ss_pred EEE-EeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC----
Confidence 554 4443 244555666788899999999999999999999998873 8999999999999999986533
Q ss_pred chHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 012492 380 NVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDI 437 (462)
Q Consensus 380 n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i 437 (462)
..+.+.+...|++++ ++++++++|.+++ +|++.+++|++++++.++.++++++++.|
T Consensus 314 ~~~~v~~~~~G~lv~~~d~~~la~~i~~ll-~~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 314 PSEIIEDGENGYLVPKGDIEALAEAIIELL-NDPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred cHHHcccCCCceEeCCCcHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 223444445788877 8999999999999 79999999999999999999999998764
No 76
>PRK14098 glycogen synthase; Provisional
Probab=99.84 E-value=9.7e-19 Score=180.16 Aligned_cols=279 Identities=16% Similarity=0.074 Sum_probs=180.3
Q ss_pred HHHHHHHh--hCCCEEEECCcccchHHHHHHHHc---CCCCCCeEEEEecCCCCC--Cc-------------cc------
Q 012492 155 EVEAGLME--YKPDIIISVHPLMQHIPLWVLKWQ---GLQKKVIFVTVITDLNTC--HP-------------TW------ 208 (462)
Q Consensus 155 ~l~~~l~~--~kPDvVi~~~~~~~~~~~~~~~~~---~~~~~iP~v~~~~d~~~~--~~-------------~~------ 208 (462)
...+++++ ++|||||++.-..+.+++++.+.. ....++|+|..+|..... .+ .+
T Consensus 130 a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~ 209 (489)
T PRK14098 130 GVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGD 209 (489)
T ss_pred HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCC
Confidence 33445544 689999998744444444443321 111379999888864210 00 00
Q ss_pred -------ccCCCcEEEEcCHHHHHHHHHc-----CCC------CCcEEEcCCCCChhhhcccCC----------------
Q 012492 209 -------FHPRVNRCYCPSKEVAKRASYF-----GLE------VSQIRVFGLPIRPSFVRAVIS---------------- 254 (462)
Q Consensus 209 -------~~~~~d~~i~~s~~~~~~l~~~-----gi~------~~~i~v~g~pv~~~~~~~~~~---------------- 254 (462)
....+|.++++|+..++.+... |++ +.++.+++|+++.+.+.+..+
T Consensus 210 ~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~ 289 (489)
T PRK14098 210 EVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKL 289 (489)
T ss_pred cccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHH
Confidence 0145789999999999887642 443 578999999999876654221
Q ss_pred --hHHHHHHcCCCC--CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH-HHHHHHhhc--cCCC
Q 012492 255 --KDNLRLELQMDP--ILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR-TLASTLQSE--EWKI 327 (462)
Q Consensus 255 --~~~~r~~l~l~~--~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-~l~~~~~~~--~~~~ 327 (462)
+..+++++|++. +.++++++|+....|++..+++++ +.+.+ ++++++++ |.+. .+++.++++ ....
T Consensus 290 ~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~-~~l~~-----~~~~lviv-G~G~~~~~~~l~~l~~~~~~ 362 (489)
T PRK14098 290 ENKKALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESL-EKLVE-----LDIQLVIC-GSGDKEYEKRFQDFAEEHPE 362 (489)
T ss_pred HHHHHHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHH-HHHHh-----cCcEEEEE-eCCCHHHHHHHHHHHHHCCC
Confidence 345677888863 455555555444455555555544 45543 35776554 5443 233333332 2346
Q ss_pred CeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHH
Q 012492 328 PVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKET 399 (462)
Q Consensus 328 ~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~l 399 (462)
+|.+.|.. +++..+|+.||+++.+|. |.+.+|||++|+|+|+++.++..+.. .....+.+.|++++ |++++
T Consensus 363 ~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v-~~~~~~~~~G~l~~~~d~~~l 441 (489)
T PRK14098 363 QVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETI-EEVSEDKGSGFIFHDYTPEAL 441 (489)
T ss_pred CEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceee-ecCCCCCCceeEeCCCCHHHH
Confidence 89999877 356899999999999884 89999999999999998865432210 00011235677764 78999
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 400 ARIVTEWFS--TKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 400 a~~i~~ll~--~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
+++|.+++. +|++.+++|++++. .+.++|+.+++.++++.++
T Consensus 442 a~ai~~~l~~~~~~~~~~~~~~~~~--~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 442 VAKLGEALALYHDEERWEELVLEAM--ERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHH
Confidence 999987542 57888888887663 4689999999999998764
No 77
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.82 E-value=9.7e-20 Score=178.51 Aligned_cols=286 Identities=16% Similarity=0.126 Sum_probs=153.4
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHH-HHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMER-SYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~-~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
||+|..+++|.||..++.+|+++|++ || +|.+... +.....+.. .+.. +...+...............+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~---ev~~~~~-----~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DY---EVSYIAS-----GRSKNYISKYGFKV-FETFPGIKLKGEDGKVNIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CC---eEEEEEc-----CCHHHhhhhhcCcc-eeccCCceEeecCCcCcHHHH
Confidence 79999999989999999999999998 76 3333211 111111111 0100 000000000000000011111
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCH
Q 012492 143 CYLA-AMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSK 221 (462)
Q Consensus 143 ~~~~-~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~ 221 (462)
.... ........+..+++++++||+||+++.+.+ .++++. .+||++.+.++.....+.. .+ .. +.
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~---~~aA~~----~~iP~i~i~~q~~~~~~~~----~~-~~--~~ 136 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIREYNPDLIISDFEYST---VVAAKL----LKIPVICISNQNYTRYPLK----TD-LI--VY 136 (321)
T ss_pred HHhhccccHHHHHHHHHHHHhcCCCEEEECCchHH---HHHHHh----cCCCEEEEecchhhcCCcc----cc-hh--HH
Confidence 1100 000123445668899999999999987765 345554 4899997765432111111 01 00 11
Q ss_pred HHHHHHHHc-------CCCCCcEEEcCCCCChhhhc-c--cCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHH
Q 012492 222 EVAKRASYF-------GLEVSQIRVFGLPIRPSFVR-A--VISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALG 291 (462)
Q Consensus 222 ~~~~~l~~~-------gi~~~~i~v~g~pv~~~~~~-~--~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~ 291 (462)
.....+... +.+..+....++| .+.. . +..+....+ + .+.+.+.+|+++|+.+.. .++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~-~-~~~~~~~iLv~~g~~~~~---~l~~~l- 207 (321)
T TIGR00661 137 PTMAALRIFNERCERFIVPDYPFPYTICP---KIIKNMEGPLIRYDVDD-V-DNYGEDYILVYIGFEYRY---KILELL- 207 (321)
T ss_pred HHHHHHHHhccccceEeeecCCCCCCCCc---cccccCCCcccchhhhc-c-ccCCCCcEEEECCcCCHH---HHHHHH-
Confidence 111111110 1111111112222 1111 0 011111111 1 133457788888775532 233322
Q ss_pred HhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccc-hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEe
Q 012492 292 ESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE-TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILN 370 (462)
Q Consensus 292 ~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~-~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~ 370 (462)
+. .+++. +++|......+ ....|+.+.+|. ++|.++|..||++|+++|.+|++||+++|+|+|+.
T Consensus 208 ~~-------~~~~~--~i~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~i 273 (321)
T TIGR00661 208 GK-------IANVK--FVCYSYEVAKN-----SYNENVEIRRITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIVI 273 (321)
T ss_pred Hh-------CCCeE--EEEeCCCCCcc-----ccCCCEEEEECChHHHHHHHHhCCEEEECCChHHHHHHHHcCCCEEEE
Confidence 22 23333 34443321111 234689999998 59999999999999999999999999999999999
Q ss_pred cCCC-CccccchHHHHHCCceeeeCCH
Q 012492 371 DYIP-GQEKGNVPYVVDNGAGVFTRSP 396 (462)
Q Consensus 371 ~~~~-~~~~~n~~~l~~~G~g~~~~~~ 396 (462)
|..+ .+|..|+..+.+.|+|+.+...
T Consensus 274 p~~~~~eQ~~na~~l~~~g~~~~l~~~ 300 (321)
T TIGR00661 274 PDLGQFEQGNNAVKLEDLGCGIALEYK 300 (321)
T ss_pred cCCCcccHHHHHHHHHHCCCEEEcChh
Confidence 9864 3667799999999999887643
No 78
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.82 E-value=2.9e-18 Score=175.31 Aligned_cols=265 Identities=11% Similarity=0.017 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhhCCCEEEECCcccchHH---HHHHHHcCCCCCCeEEEEec-CCCCC---Cc-------------ccc
Q 012492 150 AYYAKEVEAGLMEYKPDIIISVHPLMQHIP---LWVLKWQGLQKKVIFVTVIT-DLNTC---HP-------------TWF 209 (462)
Q Consensus 150 ~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~---~~~~~~~~~~~~iP~v~~~~-d~~~~---~~-------------~~~ 209 (462)
....-.+.+.+..++|||||...|..-+.. +.+++. .+ |+|.++| ++... +. .|+
T Consensus 420 I~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArK----l~-PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v 494 (794)
T PLN02501 420 IIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDK----FN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWV 494 (794)
T ss_pred ccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHH----cC-CeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHH
Confidence 344567888999999999999998754431 223332 36 7886554 44210 00 122
Q ss_pred cCC-CcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHH
Q 012492 210 HPR-VNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAM 288 (462)
Q Consensus 210 ~~~-~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~ 288 (462)
... +|+++++|..+. .+ +...+. ..++|+..++.+ ..+...+++++++...+.++++|+....|++..++.
T Consensus 495 ~r~hcD~VIaPS~atq-~L-----~~~vI~-nVnGVDte~F~P-~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LLe 566 (794)
T PLN02501 495 TRAYCHKVLRLSAATQ-DL-----PKSVIC-NVHGVNPKFLKI-GEKVAEERELGQQAFSKGAYFLGKMVWAKGYRELID 566 (794)
T ss_pred HHhhCCEEEcCCHHHH-Hh-----ccccee-ecccccccccCC-cchhHHHHhcCCccccCceEEEEcccccCCHHHHHH
Confidence 222 799999997766 33 222222 226898887775 333334456777554455666776666677777776
Q ss_pred HHHHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHH
Q 012492 289 ALGESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEAL 361 (462)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAl 361 (462)
++ +.+.+ ..++++++ ++|+++ ++.+.+.++++ +|.|.|+.++..++|+.+|+||.+|. |++++|||
T Consensus 567 Al-a~L~~---~~pnvrLv-IVGDGP~reeLe~la~eLgL--~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAM 639 (794)
T PLN02501 567 LL-AKHKN---ELDGFNLD-VFGNGEDAHEVQRAAKRLDL--NLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEAL 639 (794)
T ss_pred HH-HHHHh---hCCCeEEE-EEcCCccHHHHHHHHHHcCC--EEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHH
Confidence 65 34433 24677755 456654 24455555554 58999999888899999999999884 99999999
Q ss_pred HhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 012492 362 IRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 362 a~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~ 441 (462)
|||+|||+++.++.. .+.+.+.++...++++++++|.++| .++..+..+.+ ...++|+.+++.+++..
T Consensus 640 A~GlPVVATd~pG~e------~V~~g~nGll~~D~EafAeAI~~LL-sd~~~rl~~~a-----~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 640 AMGKFVVCADHPSNE------FFRSFPNCLTYKTSEDFVAKVKEAL-ANEPQPLTPEQ-----RYNLSWEAATQRFMEYS 707 (794)
T ss_pred HcCCCEEEecCCCCc------eEeecCCeEecCCHHHHHHHHHHHH-hCchhhhHHHH-----HhhCCHHHHHHHHHHhh
Confidence 999999999986421 1223345666788999999999999 56665544432 33889999999999988
Q ss_pred hccCC
Q 012492 442 AQRGP 446 (462)
Q Consensus 442 ~~~~~ 446 (462)
+-+..
T Consensus 708 ~~~~~ 712 (794)
T PLN02501 708 DLDKV 712 (794)
T ss_pred ccccc
Confidence 65443
No 79
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=8.9e-17 Score=153.75 Aligned_cols=343 Identities=15% Similarity=0.196 Sum_probs=210.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEE-EEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchh
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIF-VKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 140 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~-v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 140 (462)
|+||++.++.. +|...-+. |.++|+++.++ ++++ ++.-.-...| +. ..|+. . .+--+++.. .+
T Consensus 1 ~~ki~i~AGE~-SGDllGa~-LikaLk~~~~~-~efvGvgG~~m~aeG--~~---sl~~~-~---elsvmGf~E----VL 64 (381)
T COG0763 1 MLKIALSAGEA-SGDLLGAG-LIKALKARYPD-VEFVGVGGEKMEAEG--LE---SLFDM-E---ELSVMGFVE----VL 64 (381)
T ss_pred CceEEEEeccc-chhhHHHH-HHHHHHhhCCC-eEEEEeccHHHHhcc--Cc---cccCH-H---HHHHhhHHH----HH
Confidence 57999999999 79988875 99999999864 3422 2211000011 11 11110 0 111111211 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECC-cccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccccc---------
Q 012492 141 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVH-PLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFH--------- 210 (462)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~-~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~--------- 210 (462)
..++ ..+...+++.+.+.+.+||++|+.. |-.+.......|..+ +++|+|.|++-. -|.+
T Consensus 65 ~~lp---~llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~--p~i~iihYV~Ps-----VWAWr~~Ra~~i~ 134 (381)
T COG0763 65 GRLP---RLLKIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAG--PKIKIIHYVSPS-----VWAWRPKRAVKIA 134 (381)
T ss_pred HHHH---HHHHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhC--CCCCeEEEECcc-----eeeechhhHHHHH
Confidence 2222 2234566788889999999887554 544443222233332 579999887632 3443
Q ss_pred CCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCc--cHHHHHH
Q 012492 211 PRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMG--PVKETAM 288 (462)
Q Consensus 211 ~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~--~~~~~l~ 288 (462)
+.+|++++..+...+.+.+.|++ .+++|+|+-++... ..+++.+|++++++.+.+++++..||.+.+ .+...+.
T Consensus 135 ~~~D~lLailPFE~~~y~k~g~~---~~yVGHpl~d~i~~-~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~ 210 (381)
T COG0763 135 KYVDHLLAILPFEPAFYDKFGLP---CTYVGHPLADEIPL-LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFV 210 (381)
T ss_pred HHhhHeeeecCCCHHHHHhcCCC---eEEeCChhhhhccc-cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHH
Confidence 34788888888788888888885 78999998776642 257888999999999999999999988753 2334444
Q ss_pred HHHHhhhcccCCCCCceEEEEccCCHHHHHHHh-hccCC---CCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhC
Q 012492 289 ALGESLLDKETGRPIGQLIIICGRNRTLASTLQ-SEEWK---IPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRG 364 (462)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~-~~~~~---~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G 364 (462)
.+++.+++ +.|+.++++-+-... .+.... .+.+. .++.+.+ .+-.+.|.+||+.+..||. +.+|++.+|
T Consensus 211 ~a~~~l~~---~~~~~~~vlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~aD~al~aSGT-~tLE~aL~g 283 (381)
T COG0763 211 QAAQELKA---RYPDLKFVLPLVNAK-YRRIIEEALKWEVAGLSLILID--GEKRKAFAAADAALAASGT-ATLEAALAG 283 (381)
T ss_pred HHHHHHHh---hCCCceEEEecCcHH-HHHHHHHHhhccccCceEEecC--chHHHHHHHhhHHHHhccH-HHHHHHHhC
Confidence 55566664 367888777555443 111111 11122 2222222 3456899999999999985 569999999
Q ss_pred CCEEEecCCCCccccchHHHHHCCcee---------eeC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---c
Q 012492 365 LPIILNDYIPGQEKGNVPYVVDNGAGV---------FTR-------SPKETARIVTEWFSTKTDELKRMSENALKL---A 425 (462)
Q Consensus 365 ~PvI~~~~~~~~~~~n~~~l~~~G~g~---------~~~-------~~~~la~~i~~ll~~d~~~~~~m~~~a~~~---~ 425 (462)
+|+|+..-...--..-+..++.-...- +++ .++.+++++..++ .|+..++++.+..+++ .
T Consensus 284 ~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll-~~~~~~~~~~~~~~~l~~~l 362 (381)
T COG0763 284 TPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELL-LNGDRREALKEKFRELHQYL 362 (381)
T ss_pred CCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHH
Confidence 999998754221111222222222110 111 3889999999999 6876666666655443 2
Q ss_pred CCc-HHHHHHHHHHHHHh
Q 012492 426 QPE-AVVDIVKDIHDLAA 442 (462)
Q Consensus 426 ~~~-~~~~ia~~i~~l~~ 442 (462)
... +.+..|+.+.++++
T Consensus 363 ~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 363 REDPASEIAAQAVLELLL 380 (381)
T ss_pred cCCcHHHHHHHHHHHHhc
Confidence 344 67788888877664
No 80
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=1.5e-16 Score=152.51 Aligned_cols=351 Identities=15% Similarity=0.125 Sum_probs=225.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCc-hhhHHHHHHHHhhh-HHHHHHhhcCCcc
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPL-NDMERSYKFMVKHV-QLWKVAFHSTSPK 138 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~-~~~~~~y~~~~~~~-~l~~~~~~~~~~~ 138 (462)
.||||+++.+-- =...-...|..++++.+. .+..++- +|.-. ..+...|....... +.|.+...... .
T Consensus 2 ~~~Kv~~I~GTR--PE~iKmapli~~~~~~~~--~~~~vi~-----TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~-~ 71 (383)
T COG0381 2 KMLKVLTIFGTR--PEAIKMAPLVKALEKDPD--FELIVIH-----TGQHRDYEMLDQVLELFGIRKPDYDLNIMKPG-Q 71 (383)
T ss_pred CceEEEEEEecC--HHHHHHhHHHHHHHhCCC--CceEEEE-----ecccccHHHHHHHHHHhCCCCCCcchhccccC-C
Confidence 467888886543 222344568899988742 3444442 22111 12333332222211 22222111000 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHH-HHHHHcCCCCCCeEEEEecCCCCCCcc--------cc
Q 012492 139 WIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPL-WVLKWQGLQKKVIFVTVITDLNTCHPT--------WF 209 (462)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~-~~~~~~~~~~~iP~v~~~~d~~~~~~~--------~~ 209 (462)
.+.. .-......+.+++.+.+||+|++++......+. +++.+ .+||+.++.....+.... ..
T Consensus 72 tl~~-----~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~----~~IpV~HvEAGlRt~~~~~PEE~NR~l~ 142 (383)
T COG0381 72 TLGE-----ITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFY----LKIPVGHVEAGLRTGDLYFPEEINRRLT 142 (383)
T ss_pred CHHH-----HHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHH----hCCceEEEecccccCCCCCcHHHHHHHH
Confidence 1111 112334567788999999999998876554432 23333 489998876654321111 12
Q ss_pred cCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcc---cCChHHHHHH-cCCCCCCcEEEEEeCCCCC--ccH
Q 012492 210 HPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRA---VISKDNLRLE-LQMDPILPAVLLMGGGEGM--GPV 283 (462)
Q Consensus 210 ~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~---~~~~~~~r~~-l~l~~~~~~iLv~gG~~~~--~~~ 283 (462)
...++..+++++..++.+.+.|+++++|.++||++-+.+... ..+....... +. ++++.++|+++.+... +.+
T Consensus 143 ~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~-~~~~~~iLvT~HRreN~~~~~ 221 (383)
T COG0381 143 SHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLD-DKDKKYILVTAHRRENVGEPL 221 (383)
T ss_pred HHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhc-cccCcEEEEEcchhhcccccH
Confidence 234677899999999999999999999999999986654332 1111122222 33 3445689999876532 345
Q ss_pred HHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHH-hhccCCCCeEEeccc--hhHHHHHHhcchheecCChhhHHHH
Q 012492 284 KETAMALGESLLDKETGRPIGQLIIICGRNRTLASTL-QSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEA 360 (462)
Q Consensus 284 ~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~-~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EA 360 (462)
.+++.++.+.+.+ +++..++.-+-.++.+++.. +.++...+++++..+ .++..+|..|-++++.|||. .-||
T Consensus 222 ~~i~~al~~i~~~----~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDSGgi-qEEA 296 (383)
T COG0381 222 EEICEALREIAEE----YPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDSGGI-QEEA 296 (383)
T ss_pred HHHHHHHHHHHHh----CCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecCCch-hhhH
Confidence 5666555443332 45677776666665443333 445666778887665 57889999999999999965 5889
Q ss_pred HHhCCCEEEecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 012492 361 LIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 361 la~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~ 439 (462)
..+|+||++......+.+ .++.|...++. +.+.+.+++.+++ .+++.+++|+...-.+.+..++++|++.+..
T Consensus 297 p~lg~Pvl~lR~~TERPE-----~v~agt~~lvg~~~~~i~~~~~~ll-~~~~~~~~m~~~~npYgdg~as~rIv~~l~~ 370 (383)
T COG0381 297 PSLGKPVLVLRDTTERPE-----GVEAGTNILVGTDEENILDAATELL-EDEEFYERMSNAKNPYGDGNASERIVEILLN 370 (383)
T ss_pred HhcCCcEEeeccCCCCcc-----ceecCceEEeCccHHHHHHHHHHHh-hChHHHHHHhcccCCCcCcchHHHHHHHHHH
Confidence 999999999987654332 46678777775 6889999999999 7999999999998889998899999999998
Q ss_pred HHh
Q 012492 440 LAA 442 (462)
Q Consensus 440 l~~ 442 (462)
.+.
T Consensus 371 ~~~ 373 (383)
T COG0381 371 YFD 373 (383)
T ss_pred Hhh
Confidence 775
No 81
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=5.1e-17 Score=156.95 Aligned_cols=330 Identities=17% Similarity=0.173 Sum_probs=210.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
-=|+|.+.|+ |....+..|.++|+++.|+ ..+.++.. ++.........|...+. +..
T Consensus 50 p~vWiHaaSV--GEv~a~~pLv~~l~~~~P~-~~ilvTt~----T~Tg~e~a~~~~~~~v~---------h~Y------- 106 (419)
T COG1519 50 PLVWIHAASV--GEVLAALPLVRALRERFPD-LRILVTTM----TPTGAERAAALFGDSVI---------HQY------- 106 (419)
T ss_pred CeEEEEecch--hHHHHHHHHHHHHHHhCCC-CCEEEEec----CccHHHHHHHHcCCCeE---------EEe-------
Confidence 3699999999 8999999999999999765 35454432 22222222222211111 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCc--ccchHHHHHHHHcCCCCCCeEEEEecCCCC-CCccc---------cc
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHP--LMQHIPLWVLKWQGLQKKVIFVTVITDLNT-CHPTW---------FH 210 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~--~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~~~~---------~~ 210 (462)
..+.....+.++++.++||++|.... |++.+ ..++. .++|.+.+..-.+. ++++| +.
T Consensus 107 -----lP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli--~e~~~----~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~ 175 (419)
T COG1519 107 -----LPLDLPIAVRRFLRKWRPKLLIIMETELWPNLI--NELKR----RGIPLVLVNARLSDRSFARYAKLKFLARLLF 175 (419)
T ss_pred -----cCcCchHHHHHHHHhcCCCEEEEEeccccHHHH--HHHHH----cCCCEEEEeeeechhhhHHHHHHHHHHHHHH
Confidence 00112223457899999998876664 44433 34443 38999876543221 12222 23
Q ss_pred CCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcc--cCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHH
Q 012492 211 PRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRA--VISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAM 288 (462)
Q Consensus 211 ~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~--~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~ 288 (462)
+..|.+++.|+.+.+++...|.++ +.++||--......+ ....+..|.+++.+ ++++ +.++. -. +-++++.
T Consensus 176 ~~i~li~aQse~D~~Rf~~LGa~~--v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~--r~v~-iaaST-H~-GEeei~l 248 (419)
T COG1519 176 KNIDLILAQSEEDAQRFRSLGAKP--VVVTGNLKFDIEPPPQLAAELAALRRQLGGH--RPVW-VAAST-HE-GEEEIIL 248 (419)
T ss_pred HhcceeeecCHHHHHHHHhcCCcc--eEEecceeecCCCChhhHHHHHHHHHhcCCC--CceE-EEecC-CC-chHHHHH
Confidence 567999999999999999999864 899998421111110 01234667777653 5544 43333 22 2234444
Q ss_pred HHHHhhhcccCCCCCceEEEEccCCHH----HHHHHhhcc-------------CCCCeEEeccchhHHHHHHhcchhe-e
Q 012492 289 ALGESLLDKETGRPIGQLIIICGRNRT----LASTLQSEE-------------WKIPVKVRGFETQMEKWMGACDCII-T 350 (462)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~lvv~G~~~~----l~~~~~~~~-------------~~~~V~~~g~~~~~~~l~~~aD~vV-~ 350 (462)
.+.+.|++ +.|+..+|+| -+..+ ..+.++..+ .+.+|.+.+...+|..+|..||+.+ .
T Consensus 249 ~~~~~l~~---~~~~~llIlV-PRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVG 324 (419)
T COG1519 249 DAHQALKK---QFPNLLLILV-PRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVG 324 (419)
T ss_pred HHHHHHHh---hCCCceEEEe-cCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEEC
Confidence 44455554 3577655554 44432 334444322 2346777777789999999999854 3
Q ss_pred c----CChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 012492 351 K----AGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQ 426 (462)
Q Consensus 351 ~----sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~ 426 (462)
- -||..++|++++|+|+|.-|...++. ..++.+.+.|.++.+++.+.+++.+..++ +|++.|++|++++.+...
T Consensus 325 GSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~-ei~~~l~~~ga~~~v~~~~~l~~~v~~l~-~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 325 GSLVPIGGHNPLEPAAFGTPVIFGPYTFNFS-DIAERLLQAGAGLQVEDADLLAKAVELLL-ADEDKREAYGRAGLEFLA 402 (419)
T ss_pred CcccCCCCCChhhHHHcCCCEEeCCccccHH-HHHHHHHhcCCeEEECCHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 3 36889999999999999998866543 36778889999999999888888888888 789999999999988764
Q ss_pred C--cHHHHHHHHHHH
Q 012492 427 P--EAVVDIVKDIHD 439 (462)
Q Consensus 427 ~--~~~~~ia~~i~~ 439 (462)
. .+.++..+.+..
T Consensus 403 ~~~gal~r~l~~l~~ 417 (419)
T COG1519 403 QNRGALARTLEALKP 417 (419)
T ss_pred HhhHHHHHHHHHhhh
Confidence 3 344555555543
No 82
>PLN02275 transferase, transferring glycosyl groups
Probab=99.78 E-value=4.7e-17 Score=162.83 Aligned_cols=226 Identities=16% Similarity=0.181 Sum_probs=143.6
Q ss_pred HHhhCCCEEEECCcccch--HHH-HHHHHcCCCCCCeEEEEecCCCC--C-------C---------cccccCCCcEEEE
Q 012492 160 LMEYKPDIIISVHPLMQH--IPL-WVLKWQGLQKKVIFVTVITDLNT--C-------H---------PTWFHPRVNRCYC 218 (462)
Q Consensus 160 l~~~kPDvVi~~~~~~~~--~~~-~~~~~~~~~~~iP~v~~~~d~~~--~-------~---------~~~~~~~~d~~i~ 218 (462)
.+.++||+||++.+.... ... .+++. .++|+|...|+... . . ..|+++.+|.+++
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~----~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~ 171 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWL----RRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLC 171 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHH----hCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEE
Confidence 467899999987654322 112 22332 37899877777521 0 0 1234567899999
Q ss_pred cCHHHHHHHHHc-CCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCC-ccHHHHHHHHHHhhhc
Q 012492 219 PSKEVAKRASYF-GLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGM-GPVKETAMALGESLLD 296 (462)
Q Consensus 219 ~s~~~~~~l~~~-gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~-~~~~~~l~~l~~~l~~ 296 (462)
+|+.+++.+.+. |++ +.+++|+....| .+ .... . .+.++.+.++++.|+.+. ++...++.++ ..+..
T Consensus 172 ~S~~~~~~l~~~~g~~---i~vi~n~~~~~f-~~-~~~~---~--~~~~~~~~~i~~~grl~~~k~~~~li~a~-~~l~~ 240 (371)
T PLN02275 172 VTKAMQHELDQNWGIR---ATVLYDQPPEFF-RP-ASLE---I--RLRPNRPALVVSSTSWTPDEDFGILLEAA-VMYDR 240 (371)
T ss_pred CCHHHHHHHHHhcCCC---eEEECCCCHHHc-Cc-CCch---h--cccCCCcEEEEEeCceeccCCHHHHHHHH-HHHHh
Confidence 999999998764 664 788888753333 32 1111 1 112233445555566654 4555554443 33321
Q ss_pred c-----c---------CCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEec-cc--hhHHHHHHhcchheec--C--
Q 012492 297 K-----E---------TGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRG-FE--TQMEKWMGACDCIITK--A-- 352 (462)
Q Consensus 297 ~-----~---------~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g-~~--~~~~~l~~~aD~vV~~--s-- 352 (462)
. . ..+|++++++ +|+++ ++++.++++++.+ +.|.+ ++ +++..+|+.||++|++ +
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~l~i-vG~G~~~~~l~~~~~~~~l~~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~ 318 (371)
T PLN02275 241 RVAARLNESDSASGKQSLYPRLLFII-TGKGPQKAMYEEKISRLNLRH-VAFRTMWLEAEDYPLLLGSADLGVSLHTSSS 318 (371)
T ss_pred hhhhccccccccccccccCCCeEEEE-EeCCCCHHHHHHHHHHcCCCc-eEEEcCCCCHHHHHHHHHhCCEEEEeccccc
Confidence 0 0 1246777654 55554 3666777777764 88765 54 8999999999999853 1
Q ss_pred ---ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHh
Q 012492 353 ---GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 353 ---g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll 407 (462)
.|++++|||+||+|+|+++.++ +.+.+.+.++|++++++++++++|.+++
T Consensus 319 ~e~~p~~llEAmA~G~PVVa~~~gg-----~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 319 GLDLPMKVVDMFGCGLPVCAVSYSC-----IGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred cccccHHHHHHHHCCCCEEEecCCC-----hHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 2789999999999999987532 3334445557999999999999998874
No 83
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.78 E-value=2.4e-17 Score=165.30 Aligned_cols=168 Identities=20% Similarity=0.199 Sum_probs=134.3
Q ss_pred CCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHH
Q 012492 264 MDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMG 343 (462)
Q Consensus 264 l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~ 343 (462)
++.+++.++++.|+.+.. .+++..+.+.+.+ .+.++++..|. .+. . .-+.+.|+...+|++. .+++.
T Consensus 233 ~~~d~~~vyvslGt~~~~--~~l~~~~~~a~~~-----l~~~vi~~~~~-~~~--~--~~~~p~n~~v~~~~p~-~~~l~ 299 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA--VELLAIVLEALAD-----LDVRVIVSLGG-ARD--T--LVNVPDNVIVADYVPQ-LELLP 299 (406)
T ss_pred hcCCCCeEEEEcCCcccH--HHHHHHHHHHHhc-----CCcEEEEeccc-ccc--c--cccCCCceEEecCCCH-HHHhh
Confidence 556788899998888754 5666666666654 35677776665 221 1 1246789999999964 57999
Q ss_pred hcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHHH
Q 012492 344 ACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMSE 419 (462)
Q Consensus 344 ~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~~ 419 (462)
.||+||+++|.+|++||+.+|+|+|+.|...+| ..|+..+.+.|+|..++ .++.++++|.++| +|+..+++..+
T Consensus 300 ~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ-~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL-~~~~~~~~~~~ 377 (406)
T COG1819 300 RADAVIHHGGAGTTSEALYAGVPLVVIPDGADQ-PLNAERVEELGAGIALPFEELTEERLRAAVNEVL-ADDSYRRAAER 377 (406)
T ss_pred hcCEEEecCCcchHHHHHHcCCCEEEecCCcch-hHHHHHHHHcCCceecCcccCCHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 999999999999999999999999999987554 56999999999998765 5889999999999 78888888887
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHhccCC
Q 012492 420 NALKLAQPEAVVDIVKDIHDLAAQRGP 446 (462)
Q Consensus 420 ~a~~~~~~~~~~~ia~~i~~l~~~~~~ 446 (462)
..+......+...+++.|++...++..
T Consensus 378 ~~~~~~~~~g~~~~a~~le~~~~~~~~ 404 (406)
T COG1819 378 LAEEFKEEDGPAKAADLLEEFAREKKK 404 (406)
T ss_pred HHHHhhhcccHHHHHHHHHHHHhcccC
Confidence 777777778888999999998877643
No 84
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.78 E-value=6.1e-17 Score=163.93 Aligned_cols=254 Identities=16% Similarity=0.155 Sum_probs=163.7
Q ss_pred HhhCCCEEEECCcccchHHHHHHHHcCCCCCCe-EEEEecCCCCC----Cc------ccccCCCcEEEEcCHHHHHHHHH
Q 012492 161 MEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVI-FVTVITDLNTC----HP------TWFHPRVNRCYCPSKEVAKRASY 229 (462)
Q Consensus 161 ~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP-~v~~~~d~~~~----~~------~~~~~~~d~~i~~s~~~~~~l~~ 229 (462)
.+.++|++++.........+...+.. ...+ +|...|.+... .. .+..+.+|.++++|+..++.+.+
T Consensus 124 ~~~~~~v~~sy~~~~~~~~~~~l~~~---~~~~~~i~~~Hg~d~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~ 200 (407)
T cd04946 124 IDGQGTVFYSYWLHETAYALALLKKE---YLRKRVISRAHGYDLYEDRYPSGYIPLRRYLLSSLDAVFPCSEQGRNYLQK 200 (407)
T ss_pred cccCceEEEEecCchHHHHHHHHHHh---cCCceEEEEeccchhhhhhccccchHHHHHHHhcCCEEEECCHHHHHHHHH
Confidence 34556777765433322222222221 2343 77767744310 00 12345789999999999988875
Q ss_pred -cCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceE-E
Q 012492 230 -FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQL-I 307 (462)
Q Consensus 230 -~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~-l 307 (462)
.+...+++.+++++++....... ...++.+.++.+|.....+++..+++++ ..+.+. .|+..+ +
T Consensus 201 ~~~~~~~ki~vi~~gv~~~~~~~~----------~~~~~~~~il~~Grl~~~Kg~~~li~a~-~~l~~~---~p~~~l~~ 266 (407)
T cd04946 201 RYPAYKEKIKVSYLGVSDPGIISK----------PSKDDTLRIVSCSYLVPVKRVDLIIKAL-AALAKA---RPSIKIKW 266 (407)
T ss_pred HCCCccccEEEEECCcccccccCC----------CCCCCCEEEEEeeccccccCHHHHHHHH-HHHHHh---CCCceEEE
Confidence 36666788899998875433211 0122344455555444456666666655 444432 343332 2
Q ss_pred EEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHh--cchheecCC----hhhHHHHHHhCCCEEEecCCCCc
Q 012492 308 IICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGA--CDCIITKAG----PGTIAEALIRGLPIILNDYIPGQ 376 (462)
Q Consensus 308 vv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~--aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~ 376 (462)
++.|.+. .+.+.+++.+...+|+|.|++ +++..+|+. ||+++.+|. |++++|||++|+|||+++.++
T Consensus 267 ~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg-- 344 (407)
T cd04946 267 THIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG-- 344 (407)
T ss_pred EEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC--
Confidence 3345543 244455555667889999998 478899976 677887764 889999999999999998643
Q ss_pred cccchHHHHHCC-ceeeeC---CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHHHH
Q 012492 377 EKGNVPYVVDNG-AGVFTR---SPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKDIH 438 (462)
Q Consensus 377 ~~~n~~~l~~~G-~g~~~~---~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~ 438 (462)
..+ +++.| .|+++. ++++++++|.+++ +|++.+++|++++++.. +.++++.+.+.+.
T Consensus 345 ---~~e-~i~~~~~G~l~~~~~~~~~la~~I~~ll-~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 345 ---TPE-IVDNGGNGLLLSKDPTPNELVSSLSKFI-DNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred ---cHH-HhcCCCcEEEeCCCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 222 44455 787764 5799999999999 69999999999999987 4678888777653
No 85
>PHA01633 putative glycosyl transferase group 1
Probab=99.78 E-value=9.5e-17 Score=155.69 Aligned_cols=234 Identities=17% Similarity=0.141 Sum_probs=157.0
Q ss_pred CCeEEEEecCCCC--CCcccccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccC-ChHHHHHHcCCC-C
Q 012492 191 KVIFVTVITDLNT--CHPTWFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVI-SKDNLRLELQMD-P 266 (462)
Q Consensus 191 ~iP~v~~~~d~~~--~~~~~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~-~~~~~r~~l~l~-~ 266 (462)
+.|+++..|.... .+.+|..+. +.++++|+.+++.+.+.|++.. +. +.++++.+.+.+.. ...+.+++++.+ +
T Consensus 70 ~~~~~tt~~g~~~~~~y~~~m~~~-~~vIavS~~t~~~L~~~G~~~~-i~-I~~GVD~~~f~p~~~~~~~~r~~~~~~~~ 146 (335)
T PHA01633 70 KKYFYTTCDGIPNIEIVNKYLLQD-VKFIPNSKFSAENLQEVGLQVD-LP-VFHGINFKIVENAEKLVPQLKQKLDKDFP 146 (335)
T ss_pred CCceEEeeCCcCchHHHHHHHhcC-CEEEeCCHHHHHHHHHhCCCCc-ee-eeCCCChhhcCccchhhHHHHHHhCcCCC
Confidence 5678876665431 223344443 5889999999999998888754 43 45688866554322 224567777653 3
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCC----ceEEEEccCCHHHHHHHhhccCCCCeEEec---cc--hh
Q 012492 267 ILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPI----GQLIIICGRNRTLASTLQSEEWKIPVKVRG---FE--TQ 337 (462)
Q Consensus 267 ~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g---~~--~~ 337 (462)
+.+.++++|+....|+...+++++ +.+.++ .|+ ++++ +.|.. .++++++.++|+|.| +. ++
T Consensus 147 ~~~~i~~vGRl~~~KG~~~LI~A~-~~L~~~---~p~~~~~i~l~-ivG~~-----~~~~l~l~~~V~f~g~~G~~~~~d 216 (335)
T PHA01633 147 DTIKFGIVSGLTKRKNMDLMLQVF-NELNTK---YPDIAKKIHFF-VISHK-----QFTQLEVPANVHFVAEFGHNSREY 216 (335)
T ss_pred CCeEEEEEeCCccccCHHHHHHHH-HHHHHh---CCCccccEEEE-EEcHH-----HHHHcCCCCcEEEEecCCCCCHHH
Confidence 455566666555566666666655 455442 343 3544 34532 234556778999985 33 68
Q ss_pred HHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCcc-----------ccchHHHH--HCCceeeeC--CHHH
Q 012492 338 MEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQE-----------KGNVPYVV--DNGAGVFTR--SPKE 398 (462)
Q Consensus 338 ~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~-----------~~n~~~l~--~~G~g~~~~--~~~~ 398 (462)
+.++|+.||++|++|. |++++|||++|+|||+++.++-.+ ..++..+. ++|.|+.++ ++++
T Consensus 217 l~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~ 296 (335)
T PHA01633 217 IFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIED 296 (335)
T ss_pred HHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHH
Confidence 9999999999999873 999999999999999998864322 12333333 356677654 8999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 012492 399 TARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 399 la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~ 439 (462)
++++|.++++ .. .+..++.++++.+++++++++++.|++
T Consensus 297 la~ai~~~~~-~~-~~~~~~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 297 MANAIILAFE-LQ-DREERSMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred HHHHHHHHHh-cc-ChhhhhHHHHHHHHhcCHHHHHHHhhC
Confidence 9999999863 21 233346778899999999999998863
No 86
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.77 E-value=2e-16 Score=159.50 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=127.1
Q ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhc
Q 012492 266 PILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGAC 345 (462)
Q Consensus 266 ~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~a 345 (462)
.++++|+++.|+..... .+.+..+++.+.+ .++++++.+|.+... +.+++ ...++.+.+|++. .++|+.|
T Consensus 223 ~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~-----~~~~~i~~~g~~~~~-~~~~~--~~~~v~~~~~~p~-~~ll~~~ 292 (392)
T TIGR01426 223 DGRPVVLISLGTVFNNQ-PSFYRTCVEAFRD-----LDWHVVLSVGRGVDP-ADLGE--LPPNVEVRQWVPQ-LEILKKA 292 (392)
T ss_pred CCCCEEEEecCccCCCC-HHHHHHHHHHHhc-----CCCeEEEEECCCCCh-hHhcc--CCCCeEEeCCCCH-HHHHhhC
Confidence 46778888888754322 2255555565543 245677777766321 22322 3578999999975 4899999
Q ss_pred chheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012492 346 DCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMSENA 421 (462)
Q Consensus 346 D~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~~~a 421 (462)
|++|+++|.+|++||+++|+|+|+.|...+| ..|+..+.+.|+|..+. +++++.++|.+++ +|++.++++.+.+
T Consensus 293 ~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq-~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l-~~~~~~~~~~~l~ 370 (392)
T TIGR01426 293 DAFITHGGMNSTMEALFNGVPMVAVPQGADQ-PMTARRIAELGLGRHLPPEEVTAEKLREAVLAVL-SDPRYAERLRKMR 370 (392)
T ss_pred CEEEECCCchHHHHHHHhCCCEEecCCcccH-HHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 9999999999999999999999999987654 46999999999998765 3688999999999 7998888887777
Q ss_pred HhhcCCcHHHHHHHHHHHHHh
Q 012492 422 LKLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 422 ~~~~~~~~~~~ia~~i~~l~~ 442 (462)
.+.....+.+++++.|++++.
T Consensus 371 ~~~~~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 371 AEIREAGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHcCCHHHHHHHHHHhhc
Confidence 777777788999999988764
No 87
>PHA01630 putative group 1 glycosyl transferase
Probab=99.76 E-value=1e-16 Score=156.95 Aligned_cols=228 Identities=16% Similarity=0.140 Sum_probs=150.8
Q ss_pred CCeEEEEecCCCCCC---cccc-cCCCcEEEEcCHHHHHHHHHcCCC-CCcEEEcCCCCChhhhcccCChHHHHHHcCCC
Q 012492 191 KVIFVTVITDLNTCH---PTWF-HPRVNRCYCPSKEVAKRASYFGLE-VSQIRVFGLPIRPSFVRAVISKDNLRLELQMD 265 (462)
Q Consensus 191 ~iP~v~~~~d~~~~~---~~~~-~~~~d~~i~~s~~~~~~l~~~gi~-~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~ 265 (462)
++|+|...++..... ..++ .+.+|.++++|+.+++.+.+.|++ ++++.+++|+++.+.+.+. ..+
T Consensus 69 ~~~~v~e~~~~~~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~-~~~--------- 138 (331)
T PHA01630 69 GKNIVFEVADTDAISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYK-PKE--------- 138 (331)
T ss_pred CCceEEEEEeechhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCC-ccc---------
Confidence 567665555432111 1234 567899999999999999888876 5689999999998766531 111
Q ss_pred CCCcEEEEEeCCCCC-ccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHh
Q 012492 266 PILPAVLLMGGGEGM-GPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGA 344 (462)
Q Consensus 266 ~~~~~iLv~gG~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~ 344 (462)
.+.+.+++++|+... ++...+++++ +.+.+. .++++++++ |.+.. ...+. ++.. +......+++.++|+.
T Consensus 139 ~~~~~vl~~~g~~~~~Kg~d~Li~A~-~~l~~~---~~~~~lliv-G~~~~-~~~l~--~~~~-~~~~v~~~~l~~~y~~ 209 (331)
T PHA01630 139 KPHPCVLAILPHSWDRKGGDIVVKIF-HELQNE---GYDFYFLIK-SSNML-DPRLF--GLNG-VKTPLPDDDIYSLFAG 209 (331)
T ss_pred cCCCEEEEEeccccccCCHHHHHHHH-HHHHhh---CCCEEEEEE-eCccc-chhhc--cccc-eeccCCHHHHHHHHHh
Confidence 123556777777754 5555555544 555442 357776554 54421 11121 1111 1111123799999999
Q ss_pred cchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHC--------------------CceeeeC-CHHHH
Q 012492 345 CDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN--------------------GAGVFTR-SPKET 399 (462)
Q Consensus 345 aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~--------------------G~g~~~~-~~~~l 399 (462)
||++|.+|. |++++|||+||+|+|+++.++..+ .+.+. ++|++++ +.+++
T Consensus 210 aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E-----~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~ 284 (331)
T PHA01630 210 CDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSE-----WVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDA 284 (331)
T ss_pred CCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchh-----hccCCCceEEeeecccccccccCCcccccccCCCHHHH
Confidence 999998874 899999999999999999753221 12211 2355543 67788
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 400 ARIVTEWFSTK---TDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 400 a~~i~~ll~~d---~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
++++.+++ .| ++.++.++++++...+.++++++++.+++++++
T Consensus 285 ~~~ii~~l-~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 285 YQKLLEAL-ANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 88888888 44 466777777778888999999999999999865
No 88
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.75 E-value=4.5e-16 Score=154.51 Aligned_cols=237 Identities=14% Similarity=0.086 Sum_probs=152.2
Q ss_pred HHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCC----CCC-------c------------------c
Q 012492 157 EAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLN----TCH-------P------------------T 207 (462)
Q Consensus 157 ~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~----~~~-------~------------------~ 207 (462)
.+.++..++|+|+++++..... +.+. .++|.+.++|... ... . .
T Consensus 76 ~~~~~~~~~D~v~~~~~~~~~~---~~~~----~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (351)
T cd03804 76 IEQFDLSGYDLVISSSHAVAKG---VITR----PDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDR 148 (351)
T ss_pred HHhccccCCCEEEEcCcHHhcc---ccCC----CCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHH
Confidence 3456778999999887543321 1111 4678877766421 000 0 0
Q ss_pred cccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHH
Q 012492 208 WFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETA 287 (462)
Q Consensus 208 ~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l 287 (462)
+..+.+|.++++|+.+++.+.+.. + .+..+++||++.+.+.+. +...+.++.+|+....++...++
T Consensus 149 ~~~~~~d~ii~~S~~~~~~~~~~~-~-~~~~vi~~~~d~~~~~~~------------~~~~~~il~~G~~~~~K~~~~li 214 (351)
T cd03804 149 RSAARVDYFIANSRFVARRIKKYY-G-RDATVIYPPVDTDRFTPA------------EEKEDYYLSVGRLVPYKRIDLAI 214 (351)
T ss_pred HHhcCCCEEEECCHHHHHHHHHHh-C-CCcEEECCCCCHhhcCcC------------CCCCCEEEEEEcCccccChHHHH
Confidence 112678999999999999887642 2 245688888877654421 01234555555544455555555
Q ss_pred HHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccch--hHHHHHHhcchheecCC---hhhHHHHHH
Q 012492 288 MALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFET--QMEKWMGACDCIITKAG---PGTIAEALI 362 (462)
Q Consensus 288 ~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~--~~~~l~~~aD~vV~~sg---~~t~~EAla 362 (462)
+++ +.+ + ++++ ++|.+.. .+.+++ +..++|.|.|+++ ++.++|+.||+++.++. |.+++|||+
T Consensus 215 ~a~-~~~-------~-~~l~-ivG~g~~-~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama 282 (351)
T cd03804 215 EAF-NKL-------G-KRLV-VIGDGPE-LDRLRA-KAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMA 282 (351)
T ss_pred HHH-HHC-------C-CcEE-EEECChh-HHHHHh-hcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHH
Confidence 544 333 2 4544 4566643 233333 4568999999984 59999999999998763 888999999
Q ss_pred hCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhcCCcHHHHHHHH
Q 012492 363 RGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKT-DELKRMSENALKLAQPEAVVDIVKD 436 (462)
Q Consensus 363 ~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~-~~~~~m~~~a~~~~~~~~~~~ia~~ 436 (462)
+|+|+|+++.++.. +.+.+.+.|++++ ++++++++|.+++ +|+ ..+++++++++ .+++++..+.
T Consensus 283 ~G~Pvi~~~~~~~~-----e~i~~~~~G~~~~~~~~~~la~~i~~l~-~~~~~~~~~~~~~~~----~~~~~~~~~~ 349 (351)
T cd03804 283 SGTPVIAYGKGGAL-----ETVIDGVTGILFEEQTVESLAAAVERFE-KNEDFDPQAIRAHAE----RFSESRFREK 349 (351)
T ss_pred cCCCEEEeCCCCCc-----ceeeCCCCEEEeCCCCHHHHHHHHHHHH-hCcccCHHHHHHHHH----hcCHHHHHHH
Confidence 99999999864322 2344445677764 6889999999999 677 55566665554 4555555544
No 89
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.74 E-value=1.8e-15 Score=150.40 Aligned_cols=268 Identities=12% Similarity=0.074 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHhhCCCEEEECCcccch-HHHHHHHHcCCCCCCeEEEEecCCCCC-C-----cccccCCCcEEEEcCHHH
Q 012492 151 YYAKEVEAGLMEYKPDIIISVHPLMQH-IPLWVLKWQGLQKKVIFVTVITDLNTC-H-----PTWFHPRVNRCYCPSKEV 223 (462)
Q Consensus 151 ~~~~~l~~~l~~~kPDvVi~~~~~~~~-~~~~~~~~~~~~~~iP~v~~~~d~~~~-~-----~~~~~~~~d~~i~~s~~~ 223 (462)
....++.+++++++||+|++.+..... ....++.. .+||++++.-...+. . +....+.++.++++++..
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~----~~IPv~HveaG~rs~~~~eE~~r~~i~~la~l~f~~t~~~ 155 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAAL----LNIPIAHIHGGEVTEGAIDESIRHAITKLSHLHFVATEEY 155 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH----hCCcEEEEECCccCCCCchHHHHHHHHHHHhhccCCCHHH
Confidence 345577889999999999999854332 22334443 489998665432211 0 122345567889999999
Q ss_pred HHHHHHcCCCCCcEEEcCCCCChhhhcc-cCChHHHHHHcCCCCCCcEEEEEeCCCC--CccHHHHHHHHHHhhhcccCC
Q 012492 224 AKRASYFGLEVSQIRVFGLPIRPSFVRA-VISKDNLRLELQMDPILPAVLLMGGGEG--MGPVKETAMALGESLLDKETG 300 (462)
Q Consensus 224 ~~~l~~~gi~~~~i~v~g~pv~~~~~~~-~~~~~~~r~~l~l~~~~~~iLv~gG~~~--~~~~~~~l~~l~~~l~~~~~~ 300 (462)
++.+.+.|.++++|.++||+..+.+... ...++.+.++++++++++++|++..... .....+.+..+.+.+.+.
T Consensus 156 ~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~--- 232 (365)
T TIGR03568 156 RQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDEL--- 232 (365)
T ss_pred HHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHh---
Confidence 9999999999899999999987665432 1245677888998755567777765432 222223344455555431
Q ss_pred CCCceEEEEcc-CCH-HHHHHHhhccC-CCCeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCC
Q 012492 301 RPIGQLIIICG-RNR-TLASTLQSEEW-KIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPG 375 (462)
Q Consensus 301 ~~~~~~lvv~G-~~~-~l~~~~~~~~~-~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~ 375 (462)
..++.++.-.+ ... .+.+.++++.. ..++.+.+.. .++..+|+.||++|+.|+++. .||.++|+|+|... .
T Consensus 233 ~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSSggi-~EA~~lg~Pvv~l~---~ 308 (365)
T TIGR03568 233 NKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSSSGI-IEAPSFGVPTINIG---T 308 (365)
T ss_pred ccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcChhHH-HhhhhcCCCEEeec---C
Confidence 11232222112 222 24445554322 4679999865 689999999999999986554 89999999999764 2
Q ss_pred ccccchHHHHHCCce-eeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 012492 376 QEKGNVPYVVDNGAG-VFTR-SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKD 436 (462)
Q Consensus 376 ~~~~n~~~l~~~G~g-~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~ 436 (462)
.++ .++.|.. +.+. +++++.+++.+++ +++.++.|......+.+..++++|++.
T Consensus 309 R~e-----~~~~g~nvl~vg~~~~~I~~a~~~~~--~~~~~~~~~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 309 RQK-----GRLRADSVIDVDPDKEEIVKAIEKLL--DPAFKKSLKNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred Cch-----hhhhcCeEEEeCCCHHHHHHHHHHHh--ChHHHHHHhhCCCCCCCChHHHHHHHh
Confidence 222 3344544 4354 7999999999955 555555553322235566677777764
No 90
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.73 E-value=5.3e-15 Score=145.12 Aligned_cols=318 Identities=18% Similarity=0.191 Sum_probs=187.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhhcCCceEEE-EEec-cccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 65 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIF-VKDV-CKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 65 Ili~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~-v~d~-~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
|+|+++.. +|....+. |+++|++++++. +++ ++.- ... .|. +..|+. ..+--+++.. .+..
T Consensus 1 I~i~AGE~-SGD~~ga~-Li~~Lk~~~p~~-~~~GvGG~~M~~-~G~-----~~l~d~----~~lsvmG~~E----vl~~ 63 (373)
T PF02684_consen 1 IFISAGEA-SGDLHGAR-LIRALKARDPDI-EFYGVGGPRMQA-AGV-----ESLFDM----EELSVMGFVE----VLKK 63 (373)
T ss_pred CEEEeeCc-cHHHHHHH-HHHHHHhhCCCc-EEEEEechHHHh-CCC-----ceecch----HHhhhccHHH----HHHH
Confidence 57778888 89998875 999999998754 333 2211 111 111 111100 0000011110 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEE-CCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccccc---------CC
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIIS-VHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFH---------PR 212 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~-~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~---------~~ 212 (462)
.+ .-....+++.+.+++.+||++|. ++|-.+.-....+|..+ .++|+|.++.-. -|.+ +.
T Consensus 64 l~---~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~--~~~~viyYI~Pq-----vWAWr~~R~~~i~~~ 133 (373)
T PF02684_consen 64 LP---KLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRG--IPIKVIYYISPQ-----VWAWRPGRAKKIKKY 133 (373)
T ss_pred HH---HHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhC--CCceEEEEECCc-----eeeeCccHHHHHHHH
Confidence 11 11344567788899999998874 44554443223333332 345588776522 2333 34
Q ss_pred CcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHH---HHH
Q 012492 213 VNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKET---AMA 289 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~---l~~ 289 (462)
+|.++|..+-..+.+.++|+ ++.++|+|+-+..... .++...++.+ +++++++|.+..||...+ +..+ +.+
T Consensus 134 ~D~ll~ifPFE~~~y~~~g~---~~~~VGHPl~d~~~~~-~~~~~~~~~~-l~~~~~iIaLLPGSR~~E-I~rllP~~l~ 207 (373)
T PF02684_consen 134 VDHLLVIFPFEPEFYKKHGV---PVTYVGHPLLDEVKPE-PDRAEAREKL-LDPDKPIIALLPGSRKSE-IKRLLPIFLE 207 (373)
T ss_pred HhheeECCcccHHHHhccCC---CeEEECCcchhhhccC-CCHHHHHHhc-CCCCCcEEEEeCCCCHHH-HHHHHHHHHH
Confidence 68899888888888888886 4889999987765443 3456667777 888999999999887643 3333 223
Q ss_pred HHHhhhcccCCCCCceEEEEccCCHH---HHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCC
Q 012492 290 LGESLLDKETGRPIGQLIIICGRNRT---LASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLP 366 (462)
Q Consensus 290 l~~~l~~~~~~~~~~~~lvv~G~~~~---l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~P 366 (462)
.++.+.+ ++|+.++++.+-+... +.+.+.... .++.+.-...+-.+.|+.||+.+..||. +++|++.+|+|
T Consensus 208 aa~~l~~---~~p~l~fvvp~a~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~m~~ad~al~~SGT-aTLE~Al~g~P 281 (373)
T PF02684_consen 208 AAKLLKK---QRPDLQFVVPVAPEVHEELIEEILAEYP--PDVSIVIIEGESYDAMAAADAALAASGT-ATLEAALLGVP 281 (373)
T ss_pred HHHHHHH---hCCCeEEEEecCCHHHHHHHHHHHHhhC--CCCeEEEcCCchHHHHHhCcchhhcCCH-HHHHHHHhCCC
Confidence 3345554 3688888776655432 122222222 2333332235678999999999999985 55999999999
Q ss_pred EEEecCCCCccccchHHHHHCCceee---------eC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012492 367 IILNDYIPGQEKGNVPYVVDNGAGVF---------TR-------SPKETARIVTEWFSTKTDELKRMSENAL 422 (462)
Q Consensus 367 vI~~~~~~~~~~~n~~~l~~~G~g~~---------~~-------~~~~la~~i~~ll~~d~~~~~~m~~~a~ 422 (462)
+|+......-...-++.+++....-+ ++ +++.+++++.+++ .|++.++......+
T Consensus 282 ~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll-~~~~~~~~~~~~~~ 352 (373)
T PF02684_consen 282 MVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELL-ENPEKRKKQKELFR 352 (373)
T ss_pred EEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 99987643211112333433222111 11 4888999999999 67766555444433
No 91
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=2.9e-15 Score=136.25 Aligned_cols=305 Identities=16% Similarity=0.139 Sum_probs=172.5
Q ss_pred CeEEEEec---CCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcch
Q 012492 63 KNVLILMS---DTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW 139 (462)
Q Consensus 63 ~kIli~~~---~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 139 (462)
|||+|.+- ..|+||..+.+.||++|+++|. ..++++. .....+ .+ +.|... ..
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~--~~~fl~k-------~~~e~~--~~-------~~~~~f-~~----- 56 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGF--ACLFLTK-------QDIEAI--IH-------KVYEGF-KV----- 56 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCc--eEEEecc-------cchhhh--hh-------hhhhhc-cc-----
Confidence 79999983 3899999999999999999962 2333331 111110 01 112110 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEc
Q 012492 140 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCP 219 (462)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~ 219 (462)
...+ ....+++.|+|++|.++...+.--....+. ..+.|.+.+ .|.+..+ + ...|.+ .
T Consensus 57 -----------~~~~-~~n~ik~~k~d~lI~Dsygl~~dd~k~ik~---e~~~k~l~f-Dd~~~~~---~-~d~d~i--v 114 (318)
T COG3980 57 -----------LEGR-GNNLIKEEKFDLLIFDSYGLNADDFKLIKE---EAGSKILIF-DDENAKS---F-KDNDLI--V 114 (318)
T ss_pred -----------eeee-cccccccccCCEEEEeccCCCHHHHHHHHH---HhCCcEEEe-cCCCccc---h-hhhHhh--h
Confidence 0000 012588999999999986544321112221 125676543 3332111 1 122322 2
Q ss_pred CHHHHHHHHHcCCCCCcE-EEcCC---CCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhh
Q 012492 220 SKEVAKRASYFGLEVSQI-RVFGL---PIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLL 295 (462)
Q Consensus 220 s~~~~~~l~~~gi~~~~i-~v~g~---pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~ 295 (462)
+.... ....+|.-+.+. ...|. |++++|.. .+++...+ +..-||++.|+...+.+ ...++..|.
T Consensus 115 N~~~~-a~~~y~~v~~k~~~~lGp~y~~lr~eF~~---~r~~~~~r-----~~r~ilI~lGGsDpk~l---t~kvl~~L~ 182 (318)
T COG3980 115 NAILN-ANDYYGLVPNKTRYYLGPGYAPLRPEFYA---LREENTER-----PKRDILITLGGSDPKNL---TLKVLAELE 182 (318)
T ss_pred hhhhc-chhhccccCcceEEEecCCceeccHHHHH---hHHHHhhc-----chheEEEEccCCChhhh---HHHHHHHhh
Confidence 22222 222234333343 44443 78888875 34443332 23335665444343322 222333443
Q ss_pred cccCCCCCceEEEEccCCH-HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCC
Q 012492 296 DKETGRPIGQLIIICGRNR-TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIP 374 (462)
Q Consensus 296 ~~~~~~~~~~~lvv~G~~~-~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~ 374 (462)
++ ++.+-++.|... .+....+......++.+.-..+||+++|..||+.|+. +|+|+.||+..|+|.++.+...
T Consensus 183 ~~-----~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~aI~A-aGstlyEa~~lgvP~l~l~~a~ 256 (318)
T COG3980 183 QK-----NVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADLAISA-AGSTLYEALLLGVPSLVLPLAE 256 (318)
T ss_pred cc-----CeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcchheec-cchHHHHHHHhcCCceEEeeec
Confidence 31 234445556432 2333333334567899988889999999999999995 5589999999999988888755
Q ss_pred CccccchHHHHHCCceeee---CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHH
Q 012492 375 GQEKGNVPYVVDNGAGVFT---RSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDI 433 (462)
Q Consensus 375 ~~~~~n~~~l~~~G~g~~~---~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~i 433 (462)
+| ...+.++...|...-. -.+......+.++. +|+..|+.+....+...+.....+|
T Consensus 257 NQ-~~~a~~f~~lg~~~~l~~~l~~~~~~~~~~~i~-~d~~~rk~l~~~~~~i~dg~g~~rI 316 (318)
T COG3980 257 NQ-IATAKEFEALGIIKQLGYHLKDLAKDYEILQIQ-KDYARRKNLSFGSKLIGDGRGFLRI 316 (318)
T ss_pred cH-HHHHHHHHhcCchhhccCCCchHHHHHHHHHhh-hCHHHhhhhhhccceeeccccceec
Confidence 54 4477888887764333 23344455677777 7999998888777666665555444
No 92
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.68 E-value=1.5e-15 Score=149.38 Aligned_cols=269 Identities=13% Similarity=0.120 Sum_probs=157.6
Q ss_pred HHHHHHHHHHhhCCCEEEECCcccchHHH-HHHHHcCCCCCCeEEEEecCCCC---CCc-------ccccCCCcEEEEcC
Q 012492 152 YAKEVEAGLMEYKPDIIISVHPLMQHIPL-WVLKWQGLQKKVIFVTVITDLNT---CHP-------TWFHPRVNRCYCPS 220 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~~~~~~~~-~~~~~~~~~~~iP~v~~~~d~~~---~~~-------~~~~~~~d~~i~~s 220 (462)
....+.+++.+++||+|++.+......+. .++.. .+||++.+...... .++ ....+.++..++++
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~----~~ipv~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t 130 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGDRNEALAAALAAFY----LNIPVAHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPT 130 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHH----TT-EEEEES-----S-TTSSTTHHHHHHHHHHH-SEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHH----hCCCEEEecCCCCccccCCCCchhhhhhhhhhhhhhhccCC
Confidence 44567788999999999998866544332 33333 59998776543211 111 12345678999999
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCCChhhhcc-cCChHHH-HHHcCCCCCCcEEEEEeCCCCCcc---HHHHHHHHHHhhh
Q 012492 221 KEVAKRASYFGLEVSQIRVFGLPIRPSFVRA-VISKDNL-RLELQMDPILPAVLLMGGGEGMGP---VKETAMALGESLL 295 (462)
Q Consensus 221 ~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~-~~~~~~~-r~~l~l~~~~~~iLv~gG~~~~~~---~~~~l~~l~~~l~ 295 (462)
+..++.+.+.|+++++|.++|+|.-+.+... +...+.. ...+..+..++++|++........ ..+.+..+++.|.
T Consensus 131 ~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~ 210 (346)
T PF02350_consen 131 EEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALA 210 (346)
T ss_dssp HHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999876655332 1111111 111100245678889886655432 1223333445554
Q ss_pred cccCCCCCceEEEEccCCHHHH----HHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEEE
Q 012492 296 DKETGRPIGQLIIICGRNRTLA----STLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPIIL 369 (462)
Q Consensus 296 ~~~~~~~~~~~lvv~G~~~~l~----~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~ 369 (462)
+. +++++++.....+... +.++++ .++.++... .++..+|+.|+++|+.|| +..-||.++|+|+|.
T Consensus 211 ~~----~~~~vi~~~hn~p~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdSs-GI~eEa~~lg~P~v~ 282 (346)
T PF02350_consen 211 ER----QNVPVIFPLHNNPRGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDSS-GIQEEAPSLGKPVVN 282 (346)
T ss_dssp HH----TTEEEEEE--S-HHHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESSH-HHHHHGGGGT--EEE
T ss_pred hc----CCCcEEEEecCCchHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcCc-cHHHHHHHhCCeEEE
Confidence 41 3577787777655433 334433 489888765 588899999999999998 444499999999999
Q ss_pred ecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 012492 370 NDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIH 438 (462)
Q Consensus 370 ~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~ 438 (462)
....+..| .....|..+++. +++++.+++.+++ ++++.+.++.....-+.+..++++|++.++
T Consensus 283 iR~~geRq-----e~r~~~~nvlv~~~~~~I~~ai~~~l-~~~~~~~~~~~~~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 283 IRDSGERQ-----EGRERGSNVLVGTDPEAIIQAIEKAL-SDKDFYRKLKNRPNPYGDGNASERIVEILK 346 (346)
T ss_dssp CSSS-S-H-----HHHHTTSEEEETSSHHHHHHHHHHHH-H-HHHHHHHHCS--TT-SS-HHHHHHHHHH
T ss_pred ecCCCCCH-----HHHhhcceEEeCCCHHHHHHHHHHHH-hChHHHHhhccCCCCCCCCcHHHHHHHhhC
Confidence 85544333 356667666664 7999999999999 566666666543445667788888888764
No 93
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.67 E-value=8.2e-14 Score=134.99 Aligned_cols=327 Identities=14% Similarity=0.099 Sum_probs=187.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
|||+|-.... -|..-...++++|+++|| +|.++.- . ........ ..++..+....... .+
T Consensus 1 MkIwiDi~~p--~hvhfFk~~I~eL~~~Gh---eV~it~R-----~--~~~~~~LL-------~~yg~~y~~iG~~g-~~ 60 (335)
T PF04007_consen 1 MKIWIDITHP--AHVHFFKNIIRELEKRGH---EVLITAR-----D--KDETEELL-------DLYGIDYIVIGKHG-DS 60 (335)
T ss_pred CeEEEECCCc--hHHHHHHHHHHHHHhCCC---EEEEEEe-----c--cchHHHHH-------HHcCCCeEEEcCCC-CC
Confidence 7999988877 699999999999999986 5555421 1 01111111 11222111110000 11
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecC-CCCCCcccccCCCcEEEEcC
Q 012492 143 CYLA-AMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITD-LNTCHPTWFHPRVNRCYCPS 220 (462)
Q Consensus 143 ~~~~-~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d-~~~~~~~~~~~~~d~~i~~s 220 (462)
.... ........++.+++++++||++++.+...+. .+++. .++|+|.+..+ ......+...+.+|.+++|.
T Consensus 61 ~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~~a~---~va~~----lgiP~I~f~D~e~a~~~~~Lt~Pla~~i~~P~ 133 (335)
T PF04007_consen 61 LYGKLLESIERQYKLLKLIKKFKPDVAISFGSPEAA---RVAFG----LGIPSIVFNDTEHAIAQNRLTLPLADVIITPE 133 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEecCcHHHH---HHHHH----hCCCeEEEecCchhhccceeehhcCCeeECCc
Confidence 1111 1123345577888999999999988765432 23332 48999976643 22122344567889999887
Q ss_pred HHHHHHHHHcCCCCCcEE-EcCCCCChhhh-cccCChHHHHHHcCCCCCCcEEEEEeCCCCC---ccHHHHHHHHHHhhh
Q 012492 221 KEVAKRASYFGLEVSQIR-VFGLPIRPSFV-RAVISKDNLRLELQMDPILPAVLLMGGGEGM---GPVKETAMALGESLL 295 (462)
Q Consensus 221 ~~~~~~l~~~gi~~~~i~-v~g~pv~~~~~-~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~---~~~~~~l~~l~~~l~ 295 (462)
.-....+.+.|.. ++|. +-| +.+..+ .+-...+++.+++|+++ .++|++-.-...+ .+...++..+++.|.
T Consensus 134 ~~~~~~~~~~G~~-~~i~~y~G--~~E~ayl~~F~Pd~~vl~~lg~~~-~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~ 209 (335)
T PF04007_consen 134 AIPKEFLKRFGAK-NQIRTYNG--YKELAYLHPFKPDPEVLKELGLDD-EPYIVVRPEAWKASYDNGKKSILPEIIEELE 209 (335)
T ss_pred ccCHHHHHhcCCc-CCEEEECC--eeeEEeecCCCCChhHHHHcCCCC-CCEEEEEeccccCeeecCccchHHHHHHHHH
Confidence 6555556666765 5666 333 222111 11012346778899874 5777775444332 112233445556665
Q ss_pred cccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCC
Q 012492 296 DKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPG 375 (462)
Q Consensus 296 ~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~ 375 (462)
+. .+ . +++..+.....+..+.+ ++.+....-+...++..||++|+.+| .+..||+.+|+|+|.+...
T Consensus 210 ~~----~~-~-vV~ipr~~~~~~~~~~~----~~~i~~~~vd~~~Ll~~a~l~Ig~gg-TMa~EAA~LGtPaIs~~~g-- 276 (335)
T PF04007_consen 210 KY----GR-N-VVIIPRYEDQRELFEKY----GVIIPPEPVDGLDLLYYADLVIGGGG-TMAREAALLGTPAISCFPG-- 276 (335)
T ss_pred hh----Cc-e-EEEecCCcchhhHHhcc----CccccCCCCCHHHHHHhcCEEEeCCc-HHHHHHHHhCCCEEEecCC--
Confidence 42 22 2 34444443333334432 24444333356689999999999655 5679999999999987432
Q ss_pred ccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 012492 376 QEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 376 ~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~ 441 (462)
.....-+++.+.|.-+.+.+++++.+.+.+.+. .+ ++.+.....+..+.|.+.|++++
T Consensus 277 ~~~~vd~~L~~~Gll~~~~~~~ei~~~v~~~~~----~~----~~~~~~~~~d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 277 KLLAVDKYLIEKGLLYHSTDPDEIVEYVRKNLG----KR----KKIREKKSEDPTDLIIEEIEEYI 334 (335)
T ss_pred cchhHHHHHHHCCCeEecCCHHHHHHHHHHhhh----cc----cchhhhhccCHHHHHHHHHHHhh
Confidence 112234688999998888999988886655441 11 11222223667778888888765
No 94
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.66 E-value=7.4e-15 Score=137.57 Aligned_cols=348 Identities=17% Similarity=0.201 Sum_probs=197.4
Q ss_pred CCCCCeEEEEecC-CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchh-hHHHHHHHHhhhHHHHH--Hhhc
Q 012492 59 AERTKNVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLND-MERSYKFMVKHVQLWKV--AFHS 134 (462)
Q Consensus 59 ~~~~~kIli~~~~-~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~-~~~~y~~~~~~~~l~~~--~~~~ 134 (462)
...++||+|.+.. .|-||.+++..||++|.+... +.++.+++..+...+++... ++ | ++.+.++.. ++..
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~-~~~Il~IsG~~~~~~F~~~~gVd--~---V~LPsl~k~~~G~~~ 79 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYL-GFDILIISGGPPAGGFPGPAGVD--F---VKLPSLIKGDNGEYG 79 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhccc-CceEEEEeCCCccCCCCCcccCc--e---EecCceEecCCCcee
Confidence 3456799999976 689999999999999998843 35677765444333333211 10 0 111111110 0100
Q ss_pred C-Cc-chhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECC-cccch----HHHHHHHHcCCCCCCeEEEEecCCCC----
Q 012492 135 T-SP-KWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVH-PLMQH----IPLWVLKWQGLQKKVIFVTVITDLNT---- 203 (462)
Q Consensus 135 ~-~~-~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~-~~~~~----~~~~~~~~~~~~~~iP~v~~~~d~~~---- 203 (462)
. +. ...... ..+...-|....+.+|||++|++. |+... ..+-..+.. +-+.|...+|.-.
T Consensus 80 ~~d~~~~l~e~-----~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~----~t~~vL~lr~i~D~p~~ 150 (400)
T COG4671 80 LVDLDGDLEET-----KKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTT----GTRLVLGLRSIRDIPQE 150 (400)
T ss_pred eeecCCCHHHH-----HHHHHHHHHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhc----CCcceeehHhhhhchhh
Confidence 0 00 011111 122334566789999999998877 33211 112223322 3344434443321
Q ss_pred CCccc--------ccCCCcEEEEc-CHHHHHHHHHcCCCC---CcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEE
Q 012492 204 CHPTW--------FHPRVNRCYCP-SKEVAKRASYFGLEV---SQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAV 271 (462)
Q Consensus 204 ~~~~~--------~~~~~d~~i~~-s~~~~~~l~~~gi~~---~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~i 271 (462)
....| +.+..|.+++- .+...+-...+.+++ .++.++|.- .......+... ...+++..|
T Consensus 151 ~~~~w~~~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~v-q~~~~~~~~p~-------~~~pE~~~I 222 (400)
T COG4671 151 LEADWRRAETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFV-QRSLPHLPLPP-------HEAPEGFDI 222 (400)
T ss_pred hccchhhhHHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEe-eccCcCCCCCC-------cCCCccceE
Confidence 01122 23455777653 333333333344432 577788754 21111110000 011344567
Q ss_pred EEEeCCCCC-ccHHHHHHHHHHhhhcccCCCCCce--EEEEccCCH--HHHHHHhhc-cCCCCeEEeccchhHHHHHHhc
Q 012492 272 LLMGGGEGM-GPVKETAMALGESLLDKETGRPIGQ--LIIICGRNR--TLASTLQSE-EWKIPVKVRGFETQMEKWMGAC 345 (462)
Q Consensus 272 Lv~gG~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~--~lvv~G~~~--~l~~~~~~~-~~~~~V~~~g~~~~~~~l~~~a 345 (462)
||+.|+-+. ..+.+.+.++...++ +++ .+++.|+.. ..++++... ....+|+++.|.+++..||+.|
T Consensus 223 lvs~GGG~dG~eLi~~~l~A~~~l~-------~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA 295 (400)
T COG4671 223 LVSVGGGADGAELIETALAAAQLLA-------GLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGA 295 (400)
T ss_pred EEecCCChhhHHHHHHHHHHhhhCC-------CCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhh
Confidence 776443221 122222223333332 333 577889874 345555443 4457899999999999999999
Q ss_pred chheecCChhhHHHHHHhCCCEEEecCCC--CccccchHHHHHCCce-eeeC---CHHHHHHHHHHHhcCCHHHHHHHHH
Q 012492 346 DCIITKAGPGTIAEALIRGLPIILNDYIP--GQEKGNVPYVVDNGAG-VFTR---SPKETARIVTEWFSTKTDELKRMSE 419 (462)
Q Consensus 346 D~vV~~sg~~t~~EAla~G~PvI~~~~~~--~~~~~n~~~l~~~G~g-~~~~---~~~~la~~i~~ll~~d~~~~~~m~~ 419 (462)
+.+|+.+|.+|++|-+++|+|.++.|... .+|...++.+.+.|.. ++.+ +++.+++++...+ +.|.-
T Consensus 296 ~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l-~~P~~------ 368 (400)
T COG4671 296 RLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAAL-ARPSP------ 368 (400)
T ss_pred heeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcc-cCCCC------
Confidence 99999999999999999999999999864 3556678888899974 4444 3778888888877 32311
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 420 NALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 420 ~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
....-+-.+.+++++.+.+++...
T Consensus 369 -~~~~L~L~G~~~~a~~l~e~L~~~ 392 (400)
T COG4671 369 -SKPHLDLEGLEHIARILAELLSTR 392 (400)
T ss_pred -CccccCchhhHhHHHHHHHHhhhh
Confidence 123334567888888887777544
No 95
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.65 E-value=4.1e-14 Score=138.22 Aligned_cols=311 Identities=12% Similarity=0.069 Sum_probs=171.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhh
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 141 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 141 (462)
||||+|.++.. +|....+. |+++|++ + .+++-. +|-.. .+..|+. ..+--+++.. .+.
T Consensus 1 ~~~i~i~aGE~-SGD~~ga~-l~~~l~~-~---~~~~G~------GG~~m--~~~~~~~----~~lsv~G~~e----vl~ 58 (347)
T PRK14089 1 MMKILVSALEP-SANLHLKE-LLKNLPK-D---YELIGI------FDKSL--GNPLYDS----REFSIMGFVD----VLP 58 (347)
T ss_pred CcEEEEEeccc-cHHHHHHH-HHHHHhc-C---CEEEEE------echHH--HHhcCCh----HHhhhhhHHH----HHH
Confidence 68999999999 89988875 8888987 2 343321 12100 1111100 0000011110 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEE-CCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccccc---------C
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIIS-VHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFH---------P 211 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~-~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~---------~ 211 (462)
..+. -....+++.+.+ .+||++|. ++|-.+.-....+|..+ .++|++.|+.-. -|.+ +
T Consensus 59 ~~~~---~~~~~~~~~~~~--~~pd~~i~iD~p~Fnl~lak~~k~~~--~~i~viyyi~Pq-----vWAWr~~R~~~i~k 126 (347)
T PRK14089 59 KLFF---AKKAIKEMVELA--KQADKVLLMDSSSFNIPLAKKIKKAY--PKKEIIYYILPQ-----VWAWKKGRAKILEK 126 (347)
T ss_pred HHHH---HHHHHHHHHHHh--cCCCEEEEeCCCCCCHHHHHHHHhcC--CCCCEEEEECcc-----ceeeCcchHHHHHH
Confidence 1111 112333444443 69999875 44554442222233321 379999887532 2332 3
Q ss_pred CCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHH---
Q 012492 212 RVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAM--- 288 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~--- 288 (462)
.+|++++..+-..+.+ |+ ++.++|+|+.+.+.. .+. . ++ +.++|++++||.+.+-. .++.
T Consensus 127 ~~d~vl~ifPFE~~~y---g~---~~~~VGhPl~d~~~~---~~~----~--~~-~~~~I~llPGSR~~Ei~-~llP~~~ 189 (347)
T PRK14089 127 YCDFLASILPFEVQFY---QS---KATYVGHPLLDEIKE---FKK----D--LD-KEGTIAFMPGSRKSEIK-RLMPIFK 189 (347)
T ss_pred HHhhhhccCCCCHHHh---CC---CCEEECCcHHHhhhh---hhh----h--cC-CCCEEEEECCCCHHHHH-HHHHHHH
Confidence 4677777554333333 44 467999998765431 111 1 23 33789999999986532 4444
Q ss_pred HHHHhhhcccCCCCCceEEEEccCCH--HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCC
Q 012492 289 ALGESLLDKETGRPIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLP 366 (462)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~P 366 (462)
++++.+.++ ..++ ++.+... .+.+.+.+. ..+.+. +++.++|++||++++.||..|+ |++.+|+|
T Consensus 190 ~aa~~L~~~-----~~~~-~i~~a~~~~~i~~~~~~~---~~~~~~---~~~~~~m~~aDlal~~SGT~TL-E~al~g~P 256 (347)
T PRK14089 190 ELAKKLEGK-----EKIL-VVPSFFKGKDLKEIYGDI---SEFEIS---YDTHKALLEAEFAFICSGTATL-EAALIGTP 256 (347)
T ss_pred HHHHHHhhc-----CcEE-EEeCCCcHHHHHHHHhcC---CCcEEe---ccHHHHHHhhhHHHhcCcHHHH-HHHHhCCC
Confidence 444555431 1333 4445442 223333221 244444 4778999999999999998886 99999999
Q ss_pred EEEecCCCCccccchHHHHH---CCceeee-C----------------CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 012492 367 IILNDYIPGQEKGNVPYVVD---NGAGVFT-R----------------SPKETARIVTEWFSTKTDELKRMSENALKLAQ 426 (462)
Q Consensus 367 vI~~~~~~~~~~~n~~~l~~---~G~g~~~-~----------------~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~ 426 (462)
+|+.......+..|++.++. .|..-++ + +++.+++.+.+ . +.+...++.+..++...
T Consensus 257 ~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~-~--~~~~~~~~~~~l~~~l~ 333 (347)
T PRK14089 257 FVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE-M--DREKFFKKSKELREYLK 333 (347)
T ss_pred EEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH-H--HHHHHHHHHHHHHHHhc
Confidence 99966555556667877773 2322111 1 25566666655 2 22333444444555545
Q ss_pred CcHHHHHHHHHHH
Q 012492 427 PEAVVDIVKDIHD 439 (462)
Q Consensus 427 ~~~~~~ia~~i~~ 439 (462)
+.+++++++.+.+
T Consensus 334 ~~a~~~~A~~i~~ 346 (347)
T PRK14089 334 HGSAKNVAKILKE 346 (347)
T ss_pred CCHHHHHHHHHhc
Confidence 6788888888765
No 96
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.65 E-value=3.8e-13 Score=137.33 Aligned_cols=321 Identities=15% Similarity=0.228 Sum_probs=185.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEE-EEec-cccccCC-CchhhHHHHHHHHhhhHHHHHHhhcCCcch
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIF-VKDV-CKEYAGW-PLNDMERSYKFMVKHVQLWKVAFHSTSPKW 139 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~-v~d~-~~~~~~~-~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 139 (462)
.||+|.++.. +|....+. |+++|+++.|+ .+++ ++.- ... .|. ..-.++. + .. +++.. .
T Consensus 227 ~kIfI~AGE~-SGDlhgA~-Li~aLk~~~P~-i~~~GvGG~~M~a-aG~e~l~d~~e-L-------sV--mG~~E----V 288 (608)
T PRK01021 227 TSCFISAGEH-SGDTLGGN-LLKEIKALYPD-IHCFGVGGPQMRA-EGFHPLFNMEE-F-------QV--SGFWE----V 288 (608)
T ss_pred CeEEEEeccc-cHHHHHHH-HHHHHHhcCCC-cEEEEEccHHHHh-CcCcccCChHH-h-------hh--hhHHH----H
Confidence 5999999999 89998875 89999999874 3333 2210 111 111 0001111 0 00 11110 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCEEEE-CCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccccc--------
Q 012492 140 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIIS-VHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFH-------- 210 (462)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~-~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~-------- 210 (462)
++..+ .-....+++.+.+++.+||++|. |.|-.+.-....+|..| .++|+|.++.-. -|.+
T Consensus 289 L~~l~---~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~G--i~ipviyYVsPq-----VWAWR~~Rikki 358 (608)
T PRK01021 289 LLALF---KLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRG--YKGKIVHYVCPS-----IWAWRPKRKTIL 358 (608)
T ss_pred HHHHH---HHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcC--CCCCEEEEECcc-----ceeeCcchHHHH
Confidence 11111 12344567888999999999886 55555543222333321 135999877532 2332
Q ss_pred -CCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHH
Q 012492 211 -PRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMA 289 (462)
Q Consensus 211 -~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~ 289 (462)
+.+|+++|..+-..+.+.++|++ +.++|+|+-+.... ..++++.+++++++++.+++.+..||...+ +..++..
T Consensus 359 ~k~vD~ll~IfPFE~~~y~~~gv~---v~yVGHPL~d~i~~-~~~~~~~r~~lgl~~~~~iIaLLPGSR~~E-I~rllPv 433 (608)
T PRK01021 359 EKYLDLLLLILPFEQNLFKDSPLR---TVYLGHPLVETISS-FSPNLSWKEQLHLPSDKPIVAAFPGSRRGD-ILRNLTI 433 (608)
T ss_pred HHHhhhheecCccCHHHHHhcCCC---eEEECCcHHhhccc-CCCHHHHHHHcCCCCCCCEEEEECCCCHHH-HHHHHHH
Confidence 34688888888888888888874 88999999766432 246677899999988889898998887643 4444433
Q ss_pred HHHhhh--cccCCCCCceEEEEccCCHHHHHHHhhc--cCC-CCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhC
Q 012492 290 LGESLL--DKETGRPIGQLIIICGRNRTLASTLQSE--EWK-IPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRG 364 (462)
Q Consensus 290 l~~~l~--~~~~~~~~~~~lvv~G~~~~l~~~~~~~--~~~-~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G 364 (462)
+.+... .. .++.++++...+.. ..+.+++. +.. .++++..- ++-.++|++||+.++.||. +++|++.+|
T Consensus 434 ~l~aa~~~~l---~~~l~fvvp~a~~~-~~~~i~~~~~~~~~~~~~ii~~-~~~~~~m~aaD~aLaaSGT-aTLEaAL~g 507 (608)
T PRK01021 434 QVQAFLASSL---ASTHQLLVSSANPK-YDHLILEVLQQEGCLHSHIVPS-QFRYELMRECDCALAKCGT-IVLETALNQ 507 (608)
T ss_pred HHHHHHHHHh---ccCeEEEEecCchh-hHHHHHHHHhhcCCCCeEEecC-cchHHHHHhcCeeeecCCH-HHHHHHHhC
Confidence 333222 10 12456665444332 12222221 111 13344321 1236999999999999985 459999999
Q ss_pred CCEEEecCCCCccccchHHHHH------------CCcee---ee-----CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 012492 365 LPIILNDYIPGQEKGNVPYVVD------------NGAGV---FT-----RSPKETARIVTEWFSTKTDELKRMSENALKL 424 (462)
Q Consensus 365 ~PvI~~~~~~~~~~~n~~~l~~------------~G~g~---~~-----~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~ 424 (462)
+|+|+......-...-++.+++ .|-.+ ++ -+++.+++++ ++| .|++.+++|.+.-++.
T Consensus 508 ~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL-~d~~~r~~~~~~l~~l 585 (608)
T PRK01021 508 TPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DIL-KTSQSKEKQKDACRDL 585 (608)
T ss_pred CCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHh-cCHHHHHHHHHHHHHH
Confidence 9999976542111112233333 11111 12 1478888886 778 6887777777665544
No 97
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.65 E-value=1.9e-17 Score=146.57 Aligned_cols=147 Identities=30% Similarity=0.455 Sum_probs=106.3
Q ss_pred EEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhc-cCCCCeEEeccchhHHHHHHhcchh
Q 012492 270 AVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSE-EWKIPVKVRGFETQMEKWMGACDCI 348 (462)
Q Consensus 270 ~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~-~~~~~V~~~g~~~~~~~l~~~aD~v 348 (462)
+||++||+.|...+.+++..+.+.+... .+++++++++|... ..+..... +...+|.+.+|.++|.++|+.||++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~---~~~~~viv~~G~~~-~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlv 76 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEK---HKNIQVIVQTGKNN-YEELKIKVENFNPNVKVFGFVDNMAELMAAADLV 76 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHH---HHHCCCCCCCTTCE-CHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhc---CCCcEEEEEECCCc-HHHHHHHHhccCCcEEEEechhhHHHHHHHcCEE
Confidence 4789999999876666555554444321 02357888999884 22222222 2227899999999999999999999
Q ss_pred eecCChhhHHHHHHhCCCEEEecCCC---CccccchHHHHHCCceeeeCC----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012492 349 ITKAGPGTIAEALIRGLPIILNDYIP---GQEKGNVPYVVDNGAGVFTRS----PKETARIVTEWFSTKTDELKRMSENA 421 (462)
Q Consensus 349 V~~sg~~t~~EAla~G~PvI~~~~~~---~~~~~n~~~l~~~G~g~~~~~----~~~la~~i~~ll~~d~~~~~~m~~~a 421 (462)
|+++|++|++|++++|+|+|+.|... ++|..|+..+.+.|.+..+.+ ++.+.+.|.+++ .++..++.|.+++
T Consensus 77 Is~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~-~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 77 ISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELL-SDPEKLKEMAKAA 155 (167)
T ss_dssp EECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHC-CCHH-SHHHCCCH
T ss_pred EeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence 99999999999999999999999875 477889999999999877643 567999999999 6887777666554
No 98
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.62 E-value=6.7e-15 Score=137.82 Aligned_cols=333 Identities=13% Similarity=0.078 Sum_probs=199.4
Q ss_pred eEEEE----ecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec-cccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcc
Q 012492 64 NVLIL----MSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV-CKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPK 138 (462)
Q Consensus 64 kIli~----~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~-~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~ 138 (462)
+|+++ .+++| |..+-..+|.+.|-+.|| .|.+... ..+- .+...+..+.+ +-+.+ +...++.+.
T Consensus 2 ~i~mVsdff~P~~g-gveshiy~lSq~li~lgh---kVvvithayg~r--~girylt~glk--Vyylp-~~v~~n~tT-- 70 (426)
T KOG1111|consen 2 RILMVSDFFYPSTG-GVESHIYALSQCLIRLGH---KVVVITHAYGNR--VGIRYLTNGLK--VYYLP-AVVGYNQTT-- 70 (426)
T ss_pred cceeeCcccccCCC-ChhhhHHHhhcchhhcCC---eEEEEeccccCc--cceeeecCCce--EEEEe-eeeeecccc--
Confidence 45554 47896 999999999999999997 3343321 1110 11111111000 00000 111122211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccch--HHHHHHHHcCCCCCCeEEEEecCCCCC---Cccccc---
Q 012492 139 WIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQH--IPLWVLKWQGLQKKVIFVTVITDLNTC---HPTWFH--- 210 (462)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~--~~~~~~~~~~~~~~iP~v~~~~d~~~~---~~~~~~--- 210 (462)
+.+. +...+-++..+.+.+..+|+.++++... -++..++.. +..+|..-|.+..+ ...+.+
T Consensus 71 -~ptv------~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hartM----GlktVfTdHSlfGfad~~si~~n~ll 139 (426)
T KOG1111|consen 71 -FPTV------FSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHARTM----GLKTVFTDHSLFGFADIGSILTNKLL 139 (426)
T ss_pred -hhhh------hccCcccchhhhhhceEEEecCChHHHHHHHHHHHHHhc----CceEEEeccccccccchhhhhhccee
Confidence 1111 1123344566777799999998876432 233444543 54544333332111 111222
Q ss_pred ----CCCcEEEEcCHHHHHHHH-HcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHH
Q 012492 211 ----PRVNRCYCPSKEVAKRAS-YFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKE 285 (462)
Q Consensus 211 ----~~~d~~i~~s~~~~~~l~-~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~ 285 (462)
...|+++|+|...++... +..++++++.+++|-+....+.|. +.. .++.....+++.+++-..+..+
T Consensus 140 ~~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~--~~~------~~S~~i~~ivv~sRLvyrKGiD 211 (426)
T KOG1111|consen 140 PLSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPD--AAD------KPSADIITIVVASRLVYRKGID 211 (426)
T ss_pred eeeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccC--ccc------cCCCCeeEEEEEeeeeeccchH
Confidence 346899999987776553 446788999999999988777651 111 1223323344444555555566
Q ss_pred HHHHHHHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhh
Q 012492 286 TAMALGESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGT 356 (462)
Q Consensus 286 ~l~~l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t 356 (462)
++.+++..+.+ ++|+++++ ++|+++ .+++.++++.+.++|.++|-+ +++.+.|..-|+|+.+|- +++
T Consensus 212 ll~~iIp~vc~---~~p~vrfi-i~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ 287 (426)
T KOG1111|consen 212 LLLEIIPSVCD---KHPEVRFI-IIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMV 287 (426)
T ss_pred HHHHHHHHHHh---cCCCeeEE-EecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHH
Confidence 66667677665 47898865 567776 377888888899999999998 799999999999998874 899
Q ss_pred HHHHHHhCCCEEEecCCCCccccchHHHHHCCceeee-CCHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhcCCcHHHH
Q 012492 357 IAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFT-RSPKETARIVTEWFS---TKTDELKRMSENALKLAQPEAVVD 432 (462)
Q Consensus 357 ~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~-~~~~~la~~i~~ll~---~d~~~~~~m~~~a~~~~~~~~~~~ 432 (462)
+.||++||+|+|.+..++.+|. |- .+..... ++++.+++++++.+. ..|+.. ..+..+-++|.+
T Consensus 288 ivEAaScGL~VVsTrVGGIpeV-----LP-~d~i~~~~~~~~dl~~~v~~ai~~~~~~p~~~------h~~v~~~y~w~d 355 (426)
T KOG1111|consen 288 IVEAASCGLPVVSTRVGGIPEV-----LP-EDMITLGEPGPDDLVGAVEKAITKLRTLPLEF------HDRVKKMYSWKD 355 (426)
T ss_pred HHHHHhCCCEEEEeecCCcccc-----CC-ccceeccCCChHHHHHHHHHHHHHhccCchhH------HHHHHHhccHHH
Confidence 9999999999999998764443 11 1222222 346777777766652 232221 122234578888
Q ss_pred HHHHHHHHHh
Q 012492 433 IVKDIHDLAA 442 (462)
Q Consensus 433 ia~~i~~l~~ 442 (462)
+|+.-++...
T Consensus 356 Va~rTekvy~ 365 (426)
T KOG1111|consen 356 VAERTEKVYD 365 (426)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 99
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.62 E-value=6.9e-13 Score=136.92 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=122.9
Q ss_pred CcEEEEEeCCCCC-c-cHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHH--H
Q 012492 268 LPAVLLMGGGEGM-G-PVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWM--G 343 (462)
Q Consensus 268 ~~~iLv~gG~~~~-~-~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~--~ 343 (462)
+++|+++.|+... . .-.+.+..+++.+.+ .+ .+++|..+.... . .+..+||.+.+|.++ .+++ .
T Consensus 296 ~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~----l~-~~viw~~~~~~~--~----~~~p~Nv~i~~w~Pq-~~lL~hp 363 (507)
T PHA03392 296 NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKK----LP-YNVLWKYDGEVE--A----INLPANVLTQKWFPQ-RAVLKHK 363 (507)
T ss_pred CcEEEEECCCCCcCCCCCHHHHHHHHHHHHh----CC-CeEEEEECCCcC--c----ccCCCceEEecCCCH-HHHhcCC
Confidence 3578888888642 1 123444555555543 23 477776664321 1 235679999999975 5788 5
Q ss_pred hcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHHH
Q 012492 344 ACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMSE 419 (462)
Q Consensus 344 ~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~~ 419 (462)
.+++||+++|.+++.||+.+|+|+|+.|...+| ..|+..+++.|+|+.++ +++.+.++|.+++ +||+.+++..+
T Consensus 364 ~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ-~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl-~~~~y~~~a~~ 441 (507)
T PHA03392 364 NVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQ-FYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVI-ENPKYRKNLKE 441 (507)
T ss_pred CCCEEEecCCcccHHHHHHcCCCEEECCCCccH-HHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 699999999999999999999999999987665 56999999999998764 4789999999999 79998888887
Q ss_pred HHHhhcCC--cHHHHHHHHHHHHHhcc
Q 012492 420 NALKLAQP--EAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 420 ~a~~~~~~--~~~~~ia~~i~~l~~~~ 444 (462)
-++.+..+ ...++.+.+++.++.-+
T Consensus 442 ls~~~~~~p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 442 LRHLIRHQPMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 77777654 37789998888887644
No 100
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.61 E-value=6.8e-14 Score=143.41 Aligned_cols=276 Identities=12% Similarity=0.077 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccc-----------cCCCcEE
Q 012492 148 MAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWF-----------HPRVNRC 216 (462)
Q Consensus 148 ~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~-----------~~~~d~~ 216 (462)
.+..++.++.+.++ ..|+|.++.+....++.. .+.++ .+.|++.+.|-..+....|. .-.+|.+
T Consensus 117 vN~~fa~~i~~~~~--~~d~iwihDyhl~llp~~-lr~~~--~~~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~i 191 (460)
T cd03788 117 VNRKFADAIAEVLR--PGDLVWVHDYHLLLLPQM-LRERG--PDARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLI 191 (460)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEeChhhhHHHHH-HHhhC--CCCeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEE
Confidence 34555655544333 458888887765555433 33332 46788877774322111111 1236878
Q ss_pred EEcCHHHHHHHHHc-----CC------------CCCcEEEcCCCCChhhhcccCC----hHHHHHHcCCCCCCcEEEEEe
Q 012492 217 YCPSKEVAKRASYF-----GL------------EVSQIRVFGLPIRPSFVRAVIS----KDNLRLELQMDPILPAVLLMG 275 (462)
Q Consensus 217 i~~s~~~~~~l~~~-----gi------------~~~~i~v~g~pv~~~~~~~~~~----~~~~r~~l~l~~~~~~iLv~g 275 (462)
...+....+.+.+. +. ...++.++++++++..+.+... ++.+++..+..+++++++.+|
T Consensus 192 gF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vg 271 (460)
T cd03788 192 GFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVD 271 (460)
T ss_pred EECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEec
Confidence 77776655444331 11 1235788999999876553211 122333345555666666666
Q ss_pred CCCCCccHHHHHHHHHHhhhcccCCCCC----ceEEEEccC----CH---HHHHHHhhc----cC------CCCeEEe-c
Q 012492 276 GGEGMGPVKETAMALGESLLDKETGRPI----GQLIIICGR----NR---TLASTLQSE----EW------KIPVKVR-G 333 (462)
Q Consensus 276 G~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~lvv~G~----~~---~l~~~~~~~----~~------~~~V~~~-g 333 (462)
+....|++..+++++. .+.+. +|+ ++++++++. +. ++.+.++++ +. ..+|.++ |
T Consensus 272 Rl~~~Kgi~~ll~A~~-~ll~~---~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g 347 (460)
T cd03788 272 RLDYSKGIPERLLAFE-RLLER---YPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYR 347 (460)
T ss_pred CccccCCHHHHHHHHH-HHHHh---ChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeC
Confidence 5555677777777664 33331 354 345555432 22 233444332 11 1245554 5
Q ss_pred cc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCC----EEEecCCCCccccchHHHHHCCceeee--CCHHHHHH
Q 012492 334 FE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLP----IILNDYIPGQEKGNVPYVVDNGAGVFT--RSPKETAR 401 (462)
Q Consensus 334 ~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~P----vI~~~~~~~~~~~n~~~l~~~G~g~~~--~~~~~la~ 401 (462)
++ +++..+|+.||++|.+|- +.+++|||+||+| +|+++..+..+. ...|+++ .|++++++
T Consensus 348 ~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~--------~~~g~lv~p~d~~~la~ 419 (460)
T cd03788 348 SLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE--------LSGALLVNPYDIDEVAD 419 (460)
T ss_pred CCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh--------cCCCEEECCCCHHHHHH
Confidence 53 799999999999998873 8999999999999 888876432211 1235555 48999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 012492 402 IVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDL 440 (462)
Q Consensus 402 ~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l 440 (462)
+|.++++++++.++.+.+++++....++++..++.+.+-
T Consensus 420 ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~l~~ 458 (460)
T cd03788 420 AIHRALTMPLEERRERHRKLREYVRTHDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999556688889999999999889988888876653
No 101
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.59 E-value=2e-13 Score=136.74 Aligned_cols=250 Identities=14% Similarity=0.103 Sum_probs=154.7
Q ss_pred hhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc----------ccccCCCcEEEEcCHHHHHHHHHcC
Q 012492 162 EYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP----------TWFHPRVNRCYCPSKEVAKRASYFG 231 (462)
Q Consensus 162 ~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~----------~~~~~~~d~~i~~s~~~~~~l~~~g 231 (462)
+.++.++.+..|..... +... .+.++|..++|...... ..+.+.+|.+++.|+...+.+.+.+
T Consensus 100 ~~~~~i~~~~~P~~~~~---~~~~----~~~~~Vyd~~D~~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~l~~~~~~~~ 172 (373)
T cd04950 100 GFGRPILWYYTPYTLPV---AALL----QASLVVYDCVDDLSAFPGGPPELLEAERRLLKRADLVFTTSPSLYEAKRRLN 172 (373)
T ss_pred CCCCcEEEEeCccHHHH---Hhhc----CCCeEEEEcccchhccCCCCHHHHHHHHHHHHhCCEEEECCHHHHHHHhhCC
Confidence 44555666666665432 2222 36788766666432111 1234678999999999998777665
Q ss_pred CCCCcEEEcCCCCChhhhcccCChH-HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEc
Q 012492 232 LEVSQIRVFGLPIRPSFVRAVISKD-NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIIC 310 (462)
Q Consensus 232 i~~~~i~v~g~pv~~~~~~~~~~~~-~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~ 310 (462)
.++.+++|+++.+.+.+..... ..+. + ...+.+.++++ |..+.+...+++.++++. .|+++++++
T Consensus 173 ---~~i~~i~ngvd~~~f~~~~~~~~~~~~-~-~~~~~~~i~y~-G~l~~~~d~~ll~~la~~-------~p~~~~vli- 238 (373)
T cd04950 173 ---PNVVLVPNGVDYEHFAAARDPPPPPAD-L-AALPRPVIGYY-GAIAEWLDLELLEALAKA-------RPDWSFVLI- 238 (373)
T ss_pred ---CCEEEcccccCHHHhhcccccCCChhH-H-hcCCCCEEEEE-eccccccCHHHHHHHHHH-------CCCCEEEEE-
Confidence 5799999999987665321111 0111 1 12345555555 455545445666665543 467876554
Q ss_pred cCCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC---------hhhHHHHHHhCCCEEEecCCCCcccc
Q 012492 311 GRNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG---------PGTIAEALIRGLPIILNDYIPGQEKG 379 (462)
Q Consensus 311 G~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg---------~~t~~EAla~G~PvI~~~~~~~~~~~ 379 (462)
|.+....+ ...+....||+++|++ +++..+|+.||+++.++. |+.+.|+|++|+|||+++.+.
T Consensus 239 G~~~~~~~-~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~----- 312 (373)
T cd04950 239 GPVDVSID-PSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPE----- 312 (373)
T ss_pred CCCcCccC-hhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHH-----
Confidence 55411111 1111224689999998 799999999999987641 678999999999999986421
Q ss_pred chHHHHHCCceeee-CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 380 NVPYVVDNGAGVFT-RSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 380 n~~~l~~~G~g~~~-~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
.....+.++++ .++++++++|.+++.++...+.+ + .++.+..++|+..++.+++.+.+.
T Consensus 313 ---~~~~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~--~-~~~~~~~~sW~~~a~~~~~~l~~~ 372 (373)
T cd04950 313 ---VRRYEDEVVLIADDPEEFVAAIEKALLEDGPARER--R-RLRLAAQNSWDARAAEMLEALQEN 372 (373)
T ss_pred ---HHhhcCcEEEeCCCHHHHHHHHHHHHhcCCchHHH--H-HHHHHHHCCHHHHHHHHHHHHHhc
Confidence 11122334444 57999999999976333222221 1 122677899999999999777654
No 102
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.58 E-value=3.2e-14 Score=126.26 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=113.2
Q ss_pred ChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeE
Q 012492 254 SKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVK 330 (462)
Q Consensus 254 ~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~ 330 (462)
+++..+.+.+.++++++++++|+....++...++.++ ..+.++ ..+++.+ +++|.+. .+....+.++...++.
T Consensus 1 ~~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~-~~l~~~--~~~~~~l-~i~G~~~~~~~~~~~~~~~~~~~~i~ 76 (172)
T PF00534_consen 1 DKDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAF-KKLKEK--KNPNYKL-VIVGDGEYKKELKNLIEKLNLKENII 76 (172)
T ss_dssp -HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHH-HHHHHH--HHTTEEE-EEESHCCHHHHHHHHHHHTTCGTTEE
T ss_pred ChHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHH-HHHHhh--cCCCeEE-EEEccccccccccccccccccccccc
Confidence 3567778888877777666665554455566666555 444321 0256654 4566332 2455566667888999
Q ss_pred Eeccch--hHHHHHHhcchheecC----ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHH
Q 012492 331 VRGFET--QMEKWMGACDCIITKA----GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARI 402 (462)
Q Consensus 331 ~~g~~~--~~~~l~~~aD~vV~~s----g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~ 402 (462)
+.|+.+ ++..+|+.||++|++| +|.+++|||++|+|+|+++.++ +.+.+.+...|++++ ++++++++
T Consensus 77 ~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~-----~~e~~~~~~~g~~~~~~~~~~l~~~ 151 (172)
T PF00534_consen 77 FLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGG-----NNEIINDGVNGFLFDPNDIEELADA 151 (172)
T ss_dssp EEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTH-----HHHHSGTTTSEEEESTTSHHHHHHH
T ss_pred ccccccccccccccccceeccccccccccccccccccccccceeeccccC-----CceeeccccceEEeCCCCHHHHHHH
Confidence 999986 9999999999999885 4899999999999999998532 223344444577775 56999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh
Q 012492 403 VTEWFSTKTDELKRMSENALKL 424 (462)
Q Consensus 403 i~~ll~~d~~~~~~m~~~a~~~ 424 (462)
|.+++ ++++.++.|+++++++
T Consensus 152 i~~~l-~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 152 IEKLL-NDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHH-CCHHHHHHHHHHhcCC
Confidence 99999 7999999999999863
No 103
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.54 E-value=2.5e-12 Score=131.06 Aligned_cols=274 Identities=12% Similarity=0.097 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHHHhhCC-CEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcc-----c---c---cCCCc
Q 012492 147 AMAAYYAKEVEAGLMEYKP-DIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPT-----W---F---HPRVN 214 (462)
Q Consensus 147 ~~~~~~~~~l~~~l~~~kP-DvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~-----~---~---~~~~d 214 (462)
..+..++.++.+ ..+| |+|.++.......|.. .|..+ .+.++..+.|-..+.... | + .-.+|
T Consensus 112 ~vN~~fA~~i~~---~~~~~d~vwvhDYhl~l~p~~-lr~~~--~~~~igfFlHipfP~~e~f~~lp~r~~il~gll~~d 185 (456)
T TIGR02400 112 RVNRLFAEALAP---LLQPGDIVWVHDYHLMLLPAM-LRELG--VQNKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYD 185 (456)
T ss_pred HHHHHHHHHHHH---hCCCCCEEEEecchhhHHHHH-HHhhC--CCCeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcCC
Confidence 345566665544 4455 5777766655544433 34433 356665566643221110 0 0 12468
Q ss_pred EEEEcCHHHHHHHHH-----cCC-----------CCCcEEEcCCCCChhhhcccC-Ch------HHHHHHcCCCCCCcEE
Q 012492 215 RCYCPSKEVAKRASY-----FGL-----------EVSQIRVFGLPIRPSFVRAVI-SK------DNLRLELQMDPILPAV 271 (462)
Q Consensus 215 ~~i~~s~~~~~~l~~-----~gi-----------~~~~i~v~g~pv~~~~~~~~~-~~------~~~r~~l~l~~~~~~i 271 (462)
.+-..++...+.+.. .|. ...+|.+++++++.+.+.+.. .+ ..+|++++ ++++|
T Consensus 186 ligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~vI 262 (456)
T TIGR02400 186 LVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK---GRKLI 262 (456)
T ss_pred EEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---CCeEE
Confidence 887878777766543 122 224577899999987654311 11 13555553 45556
Q ss_pred EEEeCCCCCccHHHHHHHHHHhhhcccCCCCC----ceEEEEcc----CCH---HHHHHHhhc-----cC---C--CCeE
Q 012492 272 LLMGGGEGMGPVKETAMALGESLLDKETGRPI----GQLIIICG----RNR---TLASTLQSE-----EW---K--IPVK 330 (462)
Q Consensus 272 Lv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~lvv~G----~~~---~l~~~~~~~-----~~---~--~~V~ 330 (462)
+.+++....|++...++++...+.+ +|+ +.++++++ .+. ++++.++++ +. . ..+.
T Consensus 263 l~VgRLd~~KGi~~ll~A~~~ll~~----~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~ 338 (456)
T TIGR02400 263 IGVDRLDYSKGLPERLLAFERFLEE----HPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIR 338 (456)
T ss_pred EEccccccccCHHHHHHHHHHHHHh----CccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEE
Confidence 6555555567787777776443332 454 34555553 222 244444433 10 0 1244
Q ss_pred Eec-c--chhHHHHHHhcchheecCC----hhhHHHHHHhCCC----EEEecCCCCccccchHHHHHCCceeee--CCHH
Q 012492 331 VRG-F--ETQMEKWMGACDCIITKAG----PGTIAEALIRGLP----IILNDYIPGQEKGNVPYVVDNGAGVFT--RSPK 397 (462)
Q Consensus 331 ~~g-~--~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~P----vI~~~~~~~~~~~n~~~l~~~G~g~~~--~~~~ 397 (462)
+++ . .+++..+|++||+++.+|- +++++|||+||+| +|++...+.. ..+. .|+++ .|++
T Consensus 339 ~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~-----~~l~---~gllVnP~d~~ 410 (456)
T TIGR02400 339 YLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA-----QELN---GALLVNPYDID 410 (456)
T ss_pred EEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh-----HHhC---CcEEECCCCHH
Confidence 444 3 3799999999999998873 8999999999999 9998875432 2332 35555 4799
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 012492 398 ETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 398 ~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~ 441 (462)
+++++|.++|+.+++.++++.++.++....+++...++.+.+-+
T Consensus 411 ~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 411 GMADAIARALTMPLEEREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 99999999996577888888888888888888888887766543
No 104
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.54 E-value=1.6e-12 Score=128.02 Aligned_cols=231 Identities=19% Similarity=0.210 Sum_probs=149.7
Q ss_pred HHHHHHhhCC-CEEEECCcccchH--HHH-HHHHcCCCCCCeEEEEecCCCCCC----------cccccCCCcEEEEcCH
Q 012492 156 VEAGLMEYKP-DIIISVHPLMQHI--PLW-VLKWQGLQKKVIFVTVITDLNTCH----------PTWFHPRVNRCYCPSK 221 (462)
Q Consensus 156 l~~~l~~~kP-DvVi~~~~~~~~~--~~~-~~~~~~~~~~iP~v~~~~d~~~~~----------~~~~~~~~d~~i~~s~ 221 (462)
+.+.+...+| |+|+..+|..... ... +.+.++ .++|+|..+||..... ..++++.+|.++++|+
T Consensus 55 ~~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~--~~~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~iI~~S~ 132 (333)
T PRK09814 55 LDGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKK--KQVKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVLIVHSK 132 (333)
T ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHH--cCCEEEEEECCcHHHhccccchhhHHHHHHHHhCCEEEECCH
Confidence 3456788999 9999988765431 122 223222 3799999999975311 1134567899999999
Q ss_pred HHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCC
Q 012492 222 EVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGR 301 (462)
Q Consensus 222 ~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~ 301 (462)
.+++.+.+.|++..++.++++........ .+ . .++..+ .+++.|+++.. +.+. + . .
T Consensus 133 ~~~~~l~~~g~~~~~i~~~~~~~~~~~~~---~~----~---~~~~~~-~i~yaG~l~k~---~~l~---~-~------~ 188 (333)
T PRK09814 133 KMKDRLVEEGLTTDKIIVQGIFDYLNDIE---LV----K---TPSFQK-KINFAGNLEKS---PFLK---N-W------S 188 (333)
T ss_pred HHHHHHHHcCCCcCceEeccccccccccc---cc----c---cccCCc-eEEEecChhhc---hHHH---h-c------C
Confidence 99999998898877887776543221100 00 0 112234 44555666621 1111 1 1 2
Q ss_pred CCceEEEEccCCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheec-C-------------ChhhHHHHHHhCC
Q 012492 302 PIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITK-A-------------GPGTIAEALIRGL 365 (462)
Q Consensus 302 ~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~-s-------------g~~t~~EAla~G~ 365 (462)
+++++ +++|.+.... ...++|+|.|++ +++..+|+..-.+|.. . -|..+.|+|++|+
T Consensus 189 ~~~~l-~i~G~g~~~~------~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~ 261 (333)
T PRK09814 189 QGIKL-TVFGPNPEDL------ENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGL 261 (333)
T ss_pred CCCeE-EEECCCcccc------ccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCC
Confidence 45664 4567664311 244689999998 6888888873223321 1 2566899999999
Q ss_pred CEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 012492 366 PIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQP 427 (462)
Q Consensus 366 PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~ 427 (462)
|||+.+.. ..++.+.+.++|+++++.+++++++.++ +++.+++|++++++.++.
T Consensus 262 PVI~~~~~-----~~~~~V~~~~~G~~v~~~~el~~~l~~~---~~~~~~~m~~n~~~~~~~ 315 (333)
T PRK09814 262 PVIVWSKA-----AIADFIVENGLGFVVDSLEELPEIIDNI---TEEEYQEMVENVKKISKL 315 (333)
T ss_pred CEEECCCc-----cHHHHHHhCCceEEeCCHHHHHHHHHhc---CHHHHHHHHHHHHHHHHH
Confidence 99997752 3456677888999999888999988884 347788899999888754
No 105
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.54 E-value=4.1e-12 Score=129.14 Aligned_cols=283 Identities=12% Similarity=0.040 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-C---------C--------------
Q 012492 150 AYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-C---------H-------------- 205 (462)
Q Consensus 150 ~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~---------~-------------- 205 (462)
.++...+.+.+...++|++|++. |..+.++..+|... .+||+|...|-... . +
T Consensus 134 ~~~i~~~~~~~~~~~~dViH~He-Wm~g~a~~~lK~~~--~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~ 210 (590)
T cd03793 134 AWFLGEFAEQFDDEPAVVAHFHE-WQAGVGLPLLRKRK--VDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGK 210 (590)
T ss_pred HHHHHHHHhhccCCCCeEEEEcc-hhHhHHHHHHHHhC--CCCCEEEEecccccccccccCCcccchhhhhcchhhhhhc
Confidence 34444444444446788888764 54555455566432 58899876663210 0 0
Q ss_pred ---------cccccCCCcEEEEcCHHHHHHHHHc-CCCCCcEEEcCCCCChhhhcccC----------------ChHHHH
Q 012492 206 ---------PTWFHPRVNRCYCPSKEVAKRASYF-GLEVSQIRVFGLPIRPSFVRAVI----------------SKDNLR 259 (462)
Q Consensus 206 ---------~~~~~~~~d~~i~~s~~~~~~l~~~-gi~~~~i~v~g~pv~~~~~~~~~----------------~~~~~r 259 (462)
..+....+|.++++|+.+++..... +.|+++ |++|+++...+.+.. .+..++
T Consensus 211 ~~I~~r~~iE~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~ 288 (590)
T cd03793 211 RGIYHRYCIERAAAHCAHVFTTVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFY 288 (590)
T ss_pred ccchHHHHHHHHHHhhCCEEEECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHh
Confidence 0122345789999999999998875 777766 999999987764321 122346
Q ss_pred HHcCCCCCCcEEEEEeCCCC--CccHHHHHHHHHHhhhccc-CCCCCc---eEEEEccC-C---------HH----HHHH
Q 012492 260 LELQMDPILPAVLLMGGGEG--MGPVKETAMALGESLLDKE-TGRPIG---QLIIICGR-N---------RT----LAST 319 (462)
Q Consensus 260 ~~l~l~~~~~~iLv~gG~~~--~~~~~~~l~~l~~~l~~~~-~~~~~~---~~lvv~G~-~---------~~----l~~~ 319 (462)
.++++++++++++++.|+.- .|++..+++++. .|.... ....+. -++++-+. + .. +++.
T Consensus 289 ~~~~~~~d~tli~f~~GR~e~~nKGiDvlIeAl~-rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~ 367 (590)
T cd03793 289 GHYDFDLDKTLYFFTAGRYEFSNKGADMFLEALA-RLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDT 367 (590)
T ss_pred hhcCCCCCCeEEEEEeeccccccCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHH
Confidence 66788877777766555553 455555555543 332100 012222 23333332 1 00 1111
Q ss_pred H-------------------------------------------------------------------hhccC----CCC
Q 012492 320 L-------------------------------------------------------------------QSEEW----KIP 328 (462)
Q Consensus 320 ~-------------------------------------------------------------------~~~~~----~~~ 328 (462)
+ ++.++ .++
T Consensus 368 ~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~dr 447 (590)
T cd03793 368 VNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDR 447 (590)
T ss_pred HHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCe
Confidence 1 11111 233
Q ss_pred eE--Eec-cc--------hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCC--cee
Q 012492 329 VK--VRG-FE--------TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNG--AGV 391 (462)
Q Consensus 329 V~--~~g-~~--------~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G--~g~ 391 (462)
|+ |.+ |+ .+..++|+.||++|.||. |.+++|||+||+|+|+++..+-.. -+..+...+ .|+
T Consensus 448 Vkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~--~v~E~v~~~~~~gi 525 (590)
T cd03793 448 VKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGC--FMEEHIEDPESYGI 525 (590)
T ss_pred EEEEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhh--hhHHHhccCCCceE
Confidence 43 222 11 246799999999999983 899999999999999999754211 112233222 344
Q ss_pred eeC---------CHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhcCCcHHHHHHHHHHHHHh
Q 012492 392 FTR---------SPKETARIVTEWFSTKTDELKRMSENAL--KLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 392 ~~~---------~~~~la~~i~~ll~~d~~~~~~m~~~a~--~~~~~~~~~~ia~~i~~l~~ 442 (462)
.+. +.++++++|.+++ +. +.|+.+.++.+ +.++.+.|++.++...+...
T Consensus 526 ~V~~r~~~~~~e~v~~La~~m~~~~-~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~ 585 (590)
T cd03793 526 YIVDRRFKSPDESVQQLTQYMYEFC-QL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQ 585 (590)
T ss_pred EEecCCccchHHHHHHHHHHHHHHh-CC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 442 2567777788877 33 46666666655 88889999999998887543
No 106
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.45 E-value=6.1e-12 Score=115.80 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=66.8
Q ss_pred EEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH-H-HHHHhhccCCCCeEEeccc---hhHHHHHHhcch
Q 012492 273 LMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT-L-ASTLQSEEWKIPVKVRGFE---TQMEKWMGACDC 347 (462)
Q Consensus 273 v~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~-l-~~~~~~~~~~~~V~~~g~~---~~~~~l~~~aD~ 347 (462)
.+|+....++...+++.+ ..+.+ +.++++++++++.... . ......++...+|.+.|+. +++..+++.||+
T Consensus 109 ~~g~~~~~k~~~~~~~a~-~~l~~---~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di 184 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAF-ALLKE---RGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADV 184 (229)
T ss_pred EEEeecccCCHHHHHHHH-HHHHH---hCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCE
Confidence 344333344455455444 44543 2367877665544432 2 2224556677899999984 566667777999
Q ss_pred heecCC----hhhHHHHHHhCCCEEEecCCCCc
Q 012492 348 IITKAG----PGTIAEALIRGLPIILNDYIPGQ 376 (462)
Q Consensus 348 vV~~sg----~~t~~EAla~G~PvI~~~~~~~~ 376 (462)
+++++. +++++|||++|+|+|+++.+...
T Consensus 185 ~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 185 FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 999886 89999999999999999976543
No 107
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.43 E-value=2e-10 Score=118.31 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=98.0
Q ss_pred HHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH-------HHHHHHhhccCCCC
Q 012492 256 DNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR-------TLASTLQSEEWKIP 328 (462)
Q Consensus 256 ~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-------~l~~~~~~~~~~~~ 328 (462)
++..+.+.-.+++.+|+++.|+...-... .+.+++..|.. .+..++|+.+... .+.+...+.-...+
T Consensus 273 ~~~~~wLd~~~~~svvyvsfGS~~~~~~~-~~~~~~~~l~~-----~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g 346 (482)
T PLN03007 273 QECLKWLDSKKPDSVIYLSFGSVASFKNE-QLFEIAAGLEG-----SGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKG 346 (482)
T ss_pred hHHHHHHhcCCCCceEEEeecCCcCCCHH-HHHHHHHHHHH-----CCCCEEEEEecCCcccchhhcCCHHHHHHhccCC
Confidence 34455555445567899988887543222 33344444433 2456888877531 11112211112468
Q ss_pred eEEeccchhHHHHHHhcch--heecCChhhHHHHHHhCCCEEEecCCCCccccchHHHH---HCCceeee----------
Q 012492 329 VKVRGFETQMEKWMGACDC--IITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVV---DNGAGVFT---------- 393 (462)
Q Consensus 329 V~~~g~~~~~~~l~~~aD~--vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~---~~G~g~~~---------- 393 (462)
+.+.+|.++ .++++.+++ ||+++|.++++||+++|+|+|+.|...+| ..|++.++ +.|+++-.
T Consensus 347 ~~v~~w~PQ-~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ-~~na~~~~~~~~~G~~~~~~~~~~~~~~~ 424 (482)
T PLN03007 347 LIIRGWAPQ-VLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQ-FYNEKLVTQVLRTGVSVGAKKLVKVKGDF 424 (482)
T ss_pred EEEecCCCH-HHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhh-hhhHHHHHHhhcceeEeccccccccccCc
Confidence 899999976 478888875 99999999999999999999999986665 55998766 34555421
Q ss_pred CCHHHHHHHHHHHhcCCH
Q 012492 394 RSPKETARIVTEWFSTKT 411 (462)
Q Consensus 394 ~~~~~la~~i~~ll~~d~ 411 (462)
-+.+++.+++.+++ .++
T Consensus 425 ~~~~~l~~av~~~m-~~~ 441 (482)
T PLN03007 425 ISREKVEKAVREVI-VGE 441 (482)
T ss_pred ccHHHHHHHHHHHh-cCc
Confidence 15788999999999 565
No 108
>PLN02670 transferase, transferring glycosyl groups
Probab=99.42 E-value=1.5e-10 Score=117.92 Aligned_cols=179 Identities=14% Similarity=0.096 Sum_probs=124.7
Q ss_pred HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH--------HHHHHHhhccCCCC
Q 012492 257 NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR--------TLASTLQSEEWKIP 328 (462)
Q Consensus 257 ~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~--------~l~~~~~~~~~~~~ 328 (462)
+..+.+.-.+.+.+|+++.|+...-. .+.+.+++..|... +..|+|+..... .+.+...+.-....
T Consensus 267 ~~~~wLd~~~~~sVvyvsfGS~~~l~-~~q~~ela~gl~~s-----~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG 340 (472)
T PLN02670 267 RIKEWLDKQRVNSVVYVALGTEASLR-REEVTELALGLEKS-----ETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRG 340 (472)
T ss_pred HHHHHHhcCCCCceEEEEecccccCC-HHHHHHHHHHHHHC-----CCCEEEEEcCCcccccchhhcCChHHHHhccCCC
Confidence 34555655445678899988876432 23344555555431 236788775321 01111111111234
Q ss_pred eEEeccchhHHHHHHhcch--heecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--------CHHH
Q 012492 329 VKVRGFETQMEKWMGACDC--IITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--------SPKE 398 (462)
Q Consensus 329 V~~~g~~~~~~~l~~~aD~--vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--------~~~~ 398 (462)
+.+.+|.++. ++++..++ ||+++|.++++||+++|+|+|..|...+| ..|+..+++.|+|+.+. +.++
T Consensus 341 ~vv~~W~PQ~-~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ-~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~ 418 (472)
T PLN02670 341 MIHVGWVPQV-KILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQ-GLNTRLLHGKKLGLEVPRDERDGSFTSDS 418 (472)
T ss_pred eEEeCcCCHH-HHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhcc-HHHHHHHHHcCeeEEeeccccCCcCcHHH
Confidence 7778999764 78877666 99999999999999999999999987665 55999999999998763 3778
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 399 TARIVTEWFSTKT---DELKRMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 399 la~~i~~ll~~d~---~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
+.++|.++| .++ +.|++..+-+.........+++++.+++++.+.
T Consensus 419 i~~av~~vm-~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 419 VAESVRLAM-VDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred HHHHHHHHh-cCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 999999999 454 566666666666667788899999999988765
No 109
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.41 E-value=9.6e-11 Score=120.05 Aligned_cols=141 Identities=16% Similarity=0.098 Sum_probs=97.6
Q ss_pred HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH-HHHHHHhhccCCCCeEEeccc
Q 012492 257 NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR-TLASTLQSEEWKIPVKVRGFE 335 (462)
Q Consensus 257 ~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-~l~~~~~~~~~~~~V~~~g~~ 335 (462)
+....+.-.+.+++|+++.|+..... .+.+.+++..|.. .+..++|++.... .+.+.. ..++.+.+|.
T Consensus 263 ~~~~wl~~~~~~~vvyvsfGs~~~~~-~~~~~~~~~~l~~-----~~~~~lw~~~~~~~~~~~~~-----~~~~~v~~w~ 331 (459)
T PLN02448 263 DYFQWLDSQPEGSVLYVSLGSFLSVS-SAQMDEIAAGLRD-----SGVRFLWVARGEASRLKEIC-----GDMGLVVPWC 331 (459)
T ss_pred HHHHHHcCCCCCceEEEeecccccCC-HHHHHHHHHHHHh-----CCCCEEEEEcCchhhHhHhc-----cCCEEEeccC
Confidence 34445544445678999888875432 3345566666654 2456777654321 121111 2477788998
Q ss_pred hhHHHHHHhcch--heecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHC-CceeeeC---------CHHHHHHHH
Q 012492 336 TQMEKWMGACDC--IITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN-GAGVFTR---------SPKETARIV 403 (462)
Q Consensus 336 ~~~~~l~~~aD~--vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~-G~g~~~~---------~~~~la~~i 403 (462)
++ .++++.+++ ||+++|.++++||+++|+|+|+.|...+| ..|++.+++. |+|+.+. +.+++.+++
T Consensus 332 pQ-~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ-~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av 409 (459)
T PLN02448 332 DQ-LKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQ-PLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELV 409 (459)
T ss_pred CH-HHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccc-hhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHH
Confidence 65 478888776 99999999999999999999999986665 5599999874 7666542 568999999
Q ss_pred HHHhcCCH
Q 012492 404 TEWFSTKT 411 (462)
Q Consensus 404 ~~ll~~d~ 411 (462)
.++| .++
T Consensus 410 ~~vl-~~~ 416 (459)
T PLN02448 410 KRFM-DLE 416 (459)
T ss_pred HHHh-cCC
Confidence 9999 453
No 110
>PLN02208 glycosyltransferase family protein
Probab=99.41 E-value=4.1e-10 Score=114.23 Aligned_cols=201 Identities=15% Similarity=0.090 Sum_probs=119.4
Q ss_pred CCcEEEEcCHHHHHH-HHH---cCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHH
Q 012492 212 RVNRCYCPSKEVAKR-ASY---FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETA 287 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~-l~~---~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l 287 (462)
.+|.+++.|.+..+. +.+ ... ..++..+|... ..........++..+.+.-.++..+|+++.|+...-...++.
T Consensus 193 ~~~~vl~Ntf~eLE~~~~~~~~~~~-~~~v~~vGpl~-~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~ 270 (442)
T PLN02208 193 SCDVIALRTCKEIEGKFCDYISRQY-HKKVLLTGPMF-PEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQ 270 (442)
T ss_pred cCCEEEEECHHHHHHHHHHHHHhhc-CCCEEEEeecc-cCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHH
Confidence 345677766544432 111 111 13688787432 211100112345566665555567899999988643333333
Q ss_pred HHHHHh-hhcccCCCCCceEEEEccC--C--H---HHHHHHhhccCCCCeEEeccchhHHHHHHhcc--hheecCChhhH
Q 012492 288 MALGES-LLDKETGRPIGQLIIICGR--N--R---TLASTLQSEEWKIPVKVRGFETQMEKWMGACD--CIITKAGPGTI 357 (462)
Q Consensus 288 ~~l~~~-l~~~~~~~~~~~~lvv~G~--~--~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD--~vV~~sg~~t~ 357 (462)
+.+... +.. .| ++|+... + . .+.+...+.-...++.+.+|.++. ++++... +||++.|.+++
T Consensus 271 e~~~~l~~s~----~p---f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~-~iL~H~~v~~FvtHcG~nS~ 342 (442)
T PLN02208 271 ELCLGMELTG----LP---FLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQP-LILDHPSIGCFVNHCGPGTI 342 (442)
T ss_pred HHHHHHHhCC----Cc---EEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHH-HHhcCCccCeEEccCCchHH
Confidence 322221 221 23 2333321 1 1 111111111123578888999875 6887776 59999999999
Q ss_pred HHHHHhCCCEEEecCCCCccccchHHHHH-CCceeeeC-------CHHHHHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 012492 358 AEALIRGLPIILNDYIPGQEKGNVPYVVD-NGAGVFTR-------SPKETARIVTEWFSTKT-DELKRMSENALKL 424 (462)
Q Consensus 358 ~EAla~G~PvI~~~~~~~~~~~n~~~l~~-~G~g~~~~-------~~~~la~~i~~ll~~d~-~~~~~m~~~a~~~ 424 (462)
+||+++|+|+|+.|...+| ..|++.+++ .|.|+.+. +.+++.++|.+++ +++ +..+++++++++.
T Consensus 343 ~Eai~~GVP~l~~P~~~DQ-~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m-~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 343 WESLVSDCQMVLIPFLSDQ-VLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVM-DKDSDLGKLVRSNHTKL 416 (442)
T ss_pred HHHHHcCCCEEecCcchhh-HHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHh-cCCchhHHHHHHHHHHH
Confidence 9999999999999986665 459998776 78887763 5678999999999 454 4455555555444
No 111
>PLN02210 UDP-glucosyl transferase
Probab=99.37 E-value=3.5e-10 Score=115.39 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=107.0
Q ss_pred HHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH--HHHHHHhhccCCCCeEEeccch
Q 012492 259 RLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFET 336 (462)
Q Consensus 259 r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~~ 336 (462)
.+.+.-.++.++|+++.|+.... -.+.+.+++..|.. .+.+++|+++... .....+++.....+..+.+|.+
T Consensus 260 ~~wld~~~~~svvyvsfGS~~~~-~~~~~~e~a~~l~~-----~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~P 333 (456)
T PLN02210 260 MEWLDKQARSSVVYISFGSMLES-LENQVETIAKALKN-----RGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSP 333 (456)
T ss_pred HHHHhCCCCCceEEEEecccccC-CHHHHHHHHHHHHh-----CCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCC
Confidence 34454444567889988887543 23445556555543 2457888776431 1112222211123445679997
Q ss_pred hHHHHHHhcc--hheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHH-CCceeeeC--------CHHHHHHHHHH
Q 012492 337 QMEKWMGACD--CIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD-NGAGVFTR--------SPKETARIVTE 405 (462)
Q Consensus 337 ~~~~l~~~aD--~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~-~G~g~~~~--------~~~~la~~i~~ 405 (462)
+. ++++.++ +||+++|.++++||+++|+|+|+.|...+| ..|++.+++ .|+|+.+. +.+++++++.+
T Consensus 334 Q~-~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ-~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~ 411 (456)
T PLN02210 334 QE-KILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQ-PIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEA 411 (456)
T ss_pred HH-HHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccccccc-HHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHH
Confidence 64 7888887 899999999999999999999999987665 459999997 79997763 46789999999
Q ss_pred HhcCCHH---H---HHHHHHHHHhhcCC
Q 012492 406 WFSTKTD---E---LKRMSENALKLAQP 427 (462)
Q Consensus 406 ll~~d~~---~---~~~m~~~a~~~~~~ 427 (462)
++ .+++ . .+++++.+++-..+
T Consensus 412 ~m-~~~~g~~~r~~a~~l~~~a~~Av~~ 438 (456)
T PLN02210 412 VT-EGPAAADIRRRAAELKHVARLALAP 438 (456)
T ss_pred Hh-cCchHHHHHHHHHHHHHHHHHHhcC
Confidence 99 4543 2 23345555544443
No 112
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.36 E-value=1.4e-10 Score=125.62 Aligned_cols=275 Identities=12% Similarity=0.122 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHhhCC-CEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccc-----------cCCCc
Q 012492 147 AMAAYYAKEVEAGLMEYKP-DIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWF-----------HPRVN 214 (462)
Q Consensus 147 ~~~~~~~~~l~~~l~~~kP-DvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~-----------~~~~d 214 (462)
..+..++.++. +..+| |+|-++.......|.. .|.++ ++.++..++|-..+....+. .-.+|
T Consensus 132 ~vN~~FA~~i~---~~~~~~d~vWvhDYhL~llp~~-lR~~~--~~~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aD 205 (797)
T PLN03063 132 KANRMFLDVVK---ENYEEGDVVWCHDYHLMFLPQY-LKEYN--NKMKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTAD 205 (797)
T ss_pred HHHHHHHHHHH---HhcCCCCEEEEecchhhhHHHH-HHHhC--CCCcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCC
Confidence 34556666554 44455 5776666555554433 34333 57777767665432111110 12467
Q ss_pred EEEEcCHHHHHHHHH-----cCCC-----------CCcEEEcCCCCChhhhcccC-C---hH---HHHHHcCCCCCCcEE
Q 012492 215 RCYCPSKEVAKRASY-----FGLE-----------VSQIRVFGLPIRPSFVRAVI-S---KD---NLRLELQMDPILPAV 271 (462)
Q Consensus 215 ~~i~~s~~~~~~l~~-----~gi~-----------~~~i~v~g~pv~~~~~~~~~-~---~~---~~r~~l~l~~~~~~i 271 (462)
.+-..+....+.+.+ .++. ..+|.+++++|++..+.... . +. .+++.++ ++++|
T Consensus 206 ligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lI 282 (797)
T PLN03063 206 LIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GRKVI 282 (797)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEE
Confidence 777777776665543 2322 13577899999977554311 1 11 3344443 45666
Q ss_pred EEEeCCCCCccHHHHHHHHHHhhhcccCCCCCce----EEEEccCC----H---HHHHHHhhcc--CCC--------CeE
Q 012492 272 LLMGGGEGMGPVKETAMALGESLLDKETGRPIGQ----LIIICGRN----R---TLASTLQSEE--WKI--------PVK 330 (462)
Q Consensus 272 Lv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~----~lvv~G~~----~---~l~~~~~~~~--~~~--------~V~ 330 (462)
+.+++....|++...+.++...+.+ +|+++ ++.++++. . ++++.++++. ++. .|+
T Consensus 283 l~VgRLd~~KGi~~lL~Afe~lL~~----~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~ 358 (797)
T PLN03063 283 LGVDRLDMIKGIPQKYLAFEKFLEE----NPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIH 358 (797)
T ss_pred EEecccccccCHHHHHHHHHHHHHh----CccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeE
Confidence 6666555567788887776444432 56653 33344332 2 2444454432 211 233
Q ss_pred Eec-cc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCC----EEEecCCCCccccchHHHHHCCceeeeC--CHH
Q 012492 331 VRG-FE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLP----IILNDYIPGQEKGNVPYVVDNGAGVFTR--SPK 397 (462)
Q Consensus 331 ~~g-~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~P----vI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~ 397 (462)
+++ ++ +++..+|+.||++|.+|- +++++|||+||+| +|++...+.. ..+ ...+++++ |++
T Consensus 359 ~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~-----~~l--~~~allVnP~D~~ 431 (797)
T PLN03063 359 HLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAG-----QSL--GAGALLVNPWNIT 431 (797)
T ss_pred EecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCch-----hhh--cCCeEEECCCCHH
Confidence 332 33 688999999999999873 8999999999999 8888764322 222 12456654 799
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 012492 398 ETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 398 ~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~ 441 (462)
+++++|.++|..+++.+++..++.++++..+.+..-++.+.+.+
T Consensus 432 ~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l 475 (797)
T PLN03063 432 EVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMSEL 475 (797)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 99999999995588888888888899999888888777765544
No 113
>PLN00414 glycosyltransferase family protein
Probab=99.36 E-value=1.2e-09 Score=111.02 Aligned_cols=220 Identities=12% Similarity=0.006 Sum_probs=128.6
Q ss_pred CcEEEEcCHHHHHHH-HHcC--CCCCcEEEcCCCCChhhhc-ccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHH
Q 012492 213 VNRCYCPSKEVAKRA-SYFG--LEVSQIRVFGLPIRPSFVR-AVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAM 288 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l-~~~g--i~~~~i~v~g~pv~~~~~~-~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~ 288 (462)
++.+++.|....+.- .+.- .-..++..+|..+...... ...+.+...++|.-.+...+++|+.|+...-...++.+
T Consensus 193 ~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e 272 (446)
T PLN00414 193 CDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQE 272 (446)
T ss_pred CCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHH
Confidence 455666664443322 1110 0013577788543211100 00112345567766667789999999987554444433
Q ss_pred HHHHhhhcccCCCCCceEEEEccC----CH---HHHHHHhhccCCCCeEEeccchhHHHHHHhc--chheecCChhhHHH
Q 012492 289 ALGESLLDKETGRPIGQLIIICGR----NR---TLASTLQSEEWKIPVKVRGFETQMEKWMGAC--DCIITKAGPGTIAE 359 (462)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~lvv~G~----~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~a--D~vV~~sg~~t~~E 359 (462)
++..|.. .+..|+|++-. +. .+.+..++.-....+.+.+|.++. ++++.+ ++||+++|.++++|
T Consensus 273 -~a~gL~~-----s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~-~vL~h~~v~~fvtH~G~nS~~E 345 (446)
T PLN00414 273 -FCLGMEL-----TGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQP-LILSHPSVGCFVNHCGFGSMWE 345 (446)
T ss_pred -HHHHHHH-----cCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHH-HHhcCCccceEEecCchhHHHH
Confidence 3333322 12345555532 11 122222221112356667999764 788777 66999999999999
Q ss_pred HHHhCCCEEEecCCCCccccchHHHH-HCCceeeeC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CC
Q 012492 360 ALIRGLPIILNDYIPGQEKGNVPYVV-DNGAGVFTR-------SPKETARIVTEWFSTKTDELKRMSENALKLA----QP 427 (462)
Q Consensus 360 Ala~G~PvI~~~~~~~~~~~n~~~l~-~~G~g~~~~-------~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~----~~ 427 (462)
|+++|+|+|+.|...+| ..|++.++ +.|+|+.+. +.+++.+++.++|.+..+..+++++++++.. ..
T Consensus 346 a~~~GvP~l~~P~~~dQ-~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~ 424 (446)
T PLN00414 346 SLVSDCQIVFIPQLADQ-VLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP 424 (446)
T ss_pred HHHcCCCEEecCcccch-HHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC
Confidence 99999999999986665 55999986 578887762 5789999999999422344556666655542 23
Q ss_pred cH-HHHHHHHHHHH
Q 012492 428 EA-VVDIVKDIHDL 440 (462)
Q Consensus 428 ~~-~~~ia~~i~~l 440 (462)
.+ +..+.+.+.++
T Consensus 425 gg~ss~l~~~v~~~ 438 (446)
T PLN00414 425 GLLSGYADKFVEAL 438 (446)
T ss_pred CCcHHHHHHHHHHH
Confidence 33 44455555444
No 114
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.35 E-value=4.1e-10 Score=114.13 Aligned_cols=153 Identities=19% Similarity=0.173 Sum_probs=102.2
Q ss_pred HHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH--HHHHHHhhccCCCCeEEeccc
Q 012492 258 LRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFE 335 (462)
Q Consensus 258 ~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~ 335 (462)
..+.+.-.+...+|+++.|+...-.. +.+.+++..|.. ..++|++.... .+.+...+.-...++.+.+|.
T Consensus 254 c~~WLd~~~~~svvyvsfGS~~~~~~-~~~~ela~gLs~-------~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~ 325 (449)
T PLN02173 254 CTDWLDKRPQGSVVYIAFGSMAKLSS-EQMEEIASAISN-------FSYLWVVRASEESKLPPGFLETVDKDKSLVLKWS 325 (449)
T ss_pred HHHHHhcCCCCceEEEEecccccCCH-HHHHHHHHHhcC-------CCEEEEEeccchhcccchHHHhhcCCceEEeCCC
Confidence 44555544556789999998764332 344555555632 23667664321 121111111114678889999
Q ss_pred hhHHHHHHhcc--hheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHC-CceeeeC--------CHHHHHHHHH
Q 012492 336 TQMEKWMGACD--CIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN-GAGVFTR--------SPKETARIVT 404 (462)
Q Consensus 336 ~~~~~l~~~aD--~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~-G~g~~~~--------~~~~la~~i~ 404 (462)
++. ++++.++ +||+++|.++++||+++|+|+|+.|...+| ..|+..+++. |+|+-+. +.+++.+++.
T Consensus 326 PQ~-~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ-~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~ 403 (449)
T PLN02173 326 PQL-QVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQ-PMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIK 403 (449)
T ss_pred CHH-HHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcc-hHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHH
Confidence 865 6888877 899999999999999999999999986665 5599999975 7776552 4688999999
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 012492 405 EWFSTKTDELKRMSENAL 422 (462)
Q Consensus 405 ~ll~~d~~~~~~m~~~a~ 422 (462)
+++ .+++ .++|+++++
T Consensus 404 ~vm-~~~~-~~~~r~~a~ 419 (449)
T PLN02173 404 EVM-EGEK-SKEMKENAG 419 (449)
T ss_pred HHh-cCCh-HHHHHHHHH
Confidence 999 4543 233444433
No 115
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.35 E-value=9.2e-10 Score=112.79 Aligned_cols=155 Identities=20% Similarity=0.178 Sum_probs=104.6
Q ss_pred HHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH-------HHHHHHhhccCCCC
Q 012492 256 DNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR-------TLASTLQSEEWKIP 328 (462)
Q Consensus 256 ~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-------~l~~~~~~~~~~~~ 328 (462)
++..+.+.-.+++++|+++.|+...-.. +.+.+++..|.. .+..++|+++... .+.....+.-...+
T Consensus 271 ~~~~~WLd~~~~~svVyvsfGS~~~~~~-~~~~ela~gL~~-----~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g 344 (477)
T PLN02863 271 DDVMTWLDTCEDHKVVYVCFGSQVVLTK-EQMEALASGLEK-----SGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRG 344 (477)
T ss_pred HHHHHHHhcCCCCceEEEEeeceecCCH-HHHHHHHHHHHh-----CCCcEEEEECCCcccccchhhCCHHHHHHhccCC
Confidence 3455666555566789999888764333 335556566653 2457888887421 11111111112456
Q ss_pred eEEeccchhHHHHHHh--cchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHH-CCceeeeC-------CHHH
Q 012492 329 VKVRGFETQMEKWMGA--CDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD-NGAGVFTR-------SPKE 398 (462)
Q Consensus 329 V~~~g~~~~~~~l~~~--aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~-~G~g~~~~-------~~~~ 398 (462)
+.+.+|.++ .++++. +++||+++|.++++||+++|+|+|+.|...+| ..|++.+++ .|+|+.+. +.++
T Consensus 345 ~~v~~w~PQ-~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ-~~na~~v~~~~gvG~~~~~~~~~~~~~~~ 422 (477)
T PLN02863 345 LVIRGWAPQ-VAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQ-FVNASLLVDELKVAVRVCEGADTVPDSDE 422 (477)
T ss_pred EEecCCCCH-HHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccc-hhhHHHHHHhhceeEEeccCCCCCcCHHH
Confidence 888899976 467775 78999999999999999999999999987665 459998775 58887662 4678
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 012492 399 TARIVTEWFSTKTDELKRMS 418 (462)
Q Consensus 399 la~~i~~ll~~d~~~~~~m~ 418 (462)
+.+++.+++.++++.|++..
T Consensus 423 v~~~v~~~m~~~~~~r~~a~ 442 (477)
T PLN02863 423 LARVFMESVSENQVERERAK 442 (477)
T ss_pred HHHHHHHHhhccHHHHHHHH
Confidence 88889888744555544433
No 116
>PLN00164 glucosyltransferase; Provisional
Probab=99.34 E-value=1.2e-09 Score=112.17 Aligned_cols=179 Identities=16% Similarity=0.127 Sum_probs=110.4
Q ss_pred cEEEcCCCCCh-hhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH
Q 012492 236 QIRVFGLPIRP-SFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR 314 (462)
Q Consensus 236 ~i~v~g~pv~~-~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~ 314 (462)
++..+|.-+.. .-.......++..+.+.-.+...+|+++.|+...-...+ +.+++..|.. .+..++|++....
T Consensus 239 ~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q-~~ela~gL~~-----s~~~flWv~~~~~ 312 (480)
T PLN00164 239 TVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQ-VREIAAGLER-----SGHRFLWVLRGPP 312 (480)
T ss_pred ceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHH-HHHHHHHHHH-----cCCCEEEEEcCCc
Confidence 67777744311 100111122345556654445668889988875433333 5556555543 2346777765321
Q ss_pred ----------H----HHHHHhhccCCCCeEEeccchhHHHHHHhcc--hheecCChhhHHHHHHhCCCEEEecCCCCccc
Q 012492 315 ----------T----LASTLQSEEWKIPVKVRGFETQMEKWMGACD--CIITKAGPGTIAEALIRGLPIILNDYIPGQEK 378 (462)
Q Consensus 315 ----------~----l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD--~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~ 378 (462)
. +.+...+.-....+.+.+|.++ ..+++.++ +||+++|.++++||+++|+|+|+.|...+| .
T Consensus 313 ~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ-~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ-~ 390 (480)
T PLN00164 313 AAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQ-KEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQ-H 390 (480)
T ss_pred ccccccccccchhhhCChHHHHHhcCCCeEEeecCCH-HHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccc-h
Confidence 0 1111111111234667799876 47888877 699999999999999999999999986665 4
Q ss_pred cchHHHHH-CCceeeeC---------CHHHHHHHHHHHhcCCHH-HHHHHHHHHHh
Q 012492 379 GNVPYVVD-NGAGVFTR---------SPKETARIVTEWFSTKTD-ELKRMSENALK 423 (462)
Q Consensus 379 ~n~~~l~~-~G~g~~~~---------~~~~la~~i~~ll~~d~~-~~~~m~~~a~~ 423 (462)
.|+..+++ .|+|+.+. +.+++.++|.++| .+++ ..++|++++++
T Consensus 391 ~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm-~~~~~~~~~~r~~a~~ 445 (480)
T PLN00164 391 LNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLM-GGGEEEGRKAREKAAE 445 (480)
T ss_pred hHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHh-cCCchhHHHHHHHHHH
Confidence 59988765 69887652 4689999999999 4532 23344444333
No 117
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.33 E-value=1.4e-09 Score=100.84 Aligned_cols=331 Identities=12% Similarity=0.076 Sum_probs=184.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
|||+|=.... -|.+-...|..+|+++|+ ++.++.. .+..+... ..+++..+.........+
T Consensus 1 mkVwiDI~n~--~hvhfFk~lI~elekkG~---ev~iT~r-------d~~~v~~L-------Ld~ygf~~~~Igk~g~~t 61 (346)
T COG1817 1 MKVWIDIGNP--PHVHFFKNLIWELEKKGH---EVLITCR-------DFGVVTEL-------LDLYGFPYKSIGKHGGVT 61 (346)
T ss_pred CeEEEEcCCc--chhhHHHHHHHHHHhCCe---EEEEEEe-------ecCcHHHH-------HHHhCCCeEeecccCCcc
Confidence 6888877666 688889999999999985 5554421 11111111 012222222111111111
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhCCCEEEECCc-ccchHHHHHHHHcCCCCCCeEEEEecC-CCCCCcccccCCCcEEEEc
Q 012492 143 CY-LAAMAAYYAKEVEAGLMEYKPDIIISVHP-LMQHIPLWVLKWQGLQKKVIFVTVITD-LNTCHPTWFHPRVNRCYCP 219 (462)
Q Consensus 143 ~~-~~~~~~~~~~~l~~~l~~~kPDvVi~~~~-~~~~~~~~~~~~~~~~~~iP~v~~~~d-~~~~~~~~~~~~~d~~i~~ 219 (462)
+. ...-.......|.+++.+++||+.+..+. .... .+. + .++|.+.+... ..-.......+.++.++.+
T Consensus 62 l~~Kl~~~~eR~~~L~ki~~~~kpdv~i~~~s~~l~r----vaf--g--Lg~psIi~~D~ehA~~qnkl~~Pla~~ii~P 133 (346)
T COG1817 62 LKEKLLESAERVYKLSKIIAEFKPDVAIGKHSPELPR----VAF--G--LGIPSIIFVDNEHAEAQNKLTLPLADVIITP 133 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEeecCCcchhh----HHh--h--cCCceEEecCChhHHHHhhcchhhhhheecc
Confidence 11 11122345568889999999999998653 2222 121 1 48898865432 2111234556788989888
Q ss_pred CHHHHHHHHHcCCCCCcEEEcCCCCCh--hhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCc-----cHHHHHHHHHH
Q 012492 220 SKEVAKRASYFGLEVSQIRVFGLPIRP--SFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMG-----PVKETAMALGE 292 (462)
Q Consensus 220 s~~~~~~l~~~gi~~~~i~v~g~pv~~--~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~-----~~~~~l~~l~~ 292 (462)
..-....+...|..+.++.-. +++-. .+....++ +++.+++|+.++.++|+.-.-+.++. .....+..+++
T Consensus 134 ~~~~~~~~~~~G~~p~~i~~~-~giae~~~v~~f~pd-~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~ 211 (346)
T COG1817 134 EAIDEEELLDFGADPNKISGY-NGIAELANVYGFVPD-PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIK 211 (346)
T ss_pred cccchHHHHHhCCCccceecc-cceeEEeecccCCCC-HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHH
Confidence 777766777778766655432 22211 11111123 45667899998778777754443321 11223445556
Q ss_pred hhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecC
Q 012492 293 SLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 293 ~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
.|++ .+ +++..+..+.++..+.+ .++....-.-|--.++--|+++|+.+| .+..||+.+|+|+|.+..
T Consensus 212 ~l~k----~g----iV~ipr~~~~~eife~~---~n~i~pk~~vD~l~Llyya~lvig~gg-TMarEaAlLGtpaIs~~p 279 (346)
T COG1817 212 ELKK----YG----IVLIPREKEQAEIFEGY---RNIIIPKKAVDTLSLLYYATLVIGAGG-TMAREAALLGTPAISCYP 279 (346)
T ss_pred HHHh----Cc----EEEecCchhHHHHHhhh---ccccCCcccccHHHHHhhhheeecCCc-hHHHHHHHhCCceEEecC
Confidence 6543 22 34455555455555533 222222222233458889999999555 567999999999999884
Q ss_pred CCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 012492 373 IPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 373 ~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~ 442 (462)
+ .-..--+++++.|.-+-..++.+..+.+.++| .++...+ ++ -.....-...|.+.++++++
T Consensus 280 G--kll~vdk~lie~G~~~~s~~~~~~~~~a~~~l-~~~~~kK-~~----~~k~e~~~~~ii~~ve~~~e 341 (346)
T COG1817 280 G--KLLAVDKYLIEKGLLYHSTDEIAIVEYAVRNL-KYRRLKK-TG----VLKLEDPTRLIIDVVEEMLE 341 (346)
T ss_pred C--ccccccHHHHhcCceeecCCHHHHHHHHHHHh-hchhhcc-cc----ccccccHHHHHHHHHHHHhh
Confidence 3 21222357888898887778777777777777 4443211 11 01112344556666666554
No 118
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.28 E-value=3.8e-09 Score=107.87 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=111.6
Q ss_pred cEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCC--
Q 012492 236 QIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRN-- 313 (462)
Q Consensus 236 ~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~-- 313 (462)
++..+|.-+.... .. .+.+...+.+.-.+...+|+++.|+...-.. +.+.+++..|.. .+..|+|++...
T Consensus 233 ~v~~VGPl~~~~~-~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~-~q~~ela~gL~~-----s~~~flW~~r~~~~ 304 (481)
T PLN02992 233 PVYPIGPLCRPIQ-SS-KTDHPVLDWLNKQPNESVLYISFGSGGSLSA-KQLTELAWGLEM-----SQQRFVWVVRPPVD 304 (481)
T ss_pred ceEEecCccCCcC-CC-cchHHHHHHHHcCCCCceEEEeecccccCCH-HHHHHHHHHHHH-----cCCCEEEEEeCCcc
Confidence 5777775433211 11 1122344555444445689999888754322 233445444543 123678887311
Q ss_pred ----------------H----HHHHHHhhccCCCCeEEeccchhHHHHHHhcch--heecCChhhHHHHHHhCCCEEEec
Q 012492 314 ----------------R----TLASTLQSEEWKIPVKVRGFETQMEKWMGACDC--IITKAGPGTIAEALIRGLPIILND 371 (462)
Q Consensus 314 ----------------~----~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~--vV~~sg~~t~~EAla~G~PvI~~~ 371 (462)
. .+.+...+.-...++.+.+|.++. ++++...+ ||+++|.++++||+.+|+|+|+.|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~-~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P 383 (481)
T PLN02992 305 GSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQA-EILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWP 383 (481)
T ss_pred cccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHH-HHhCCcccCeeEecCchhHHHHHHHcCCCEEecC
Confidence 0 011111111123468888999764 78888775 999999999999999999999999
Q ss_pred CCCCccccchHHHH-HCCceeeeC------CHHHHHHHHHHHhcCCHH------HHHHHHHHHHhhc
Q 012492 372 YIPGQEKGNVPYVV-DNGAGVFTR------SPKETARIVTEWFSTKTD------ELKRMSENALKLA 425 (462)
Q Consensus 372 ~~~~~~~~n~~~l~-~~G~g~~~~------~~~~la~~i~~ll~~d~~------~~~~m~~~a~~~~ 425 (462)
...+| ..|+..++ +.|+|+.+. +.+++.+++.+++ .+++ ..+++++.+++-.
T Consensus 384 ~~~DQ-~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm-~~~~g~~~r~~a~~~~~~a~~Av 448 (481)
T PLN02992 384 LFAEQ-NMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVM-VEEEGEEMRRKVKKLRDTAEMSL 448 (481)
T ss_pred ccchh-HHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHh
Confidence 87665 45999985 789987763 4678999999999 4431 2344555555444
No 119
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.23 E-value=2.4e-10 Score=114.20 Aligned_cols=226 Identities=17% Similarity=0.075 Sum_probs=135.4
Q ss_pred CCcEEEEcCHHHHHHHHHc--CCCCCcEEEcCCCCChhhhccc------CChHHHHHHcCCCCCCcEEEEEeCCCCCccH
Q 012492 212 RVNRCYCPSKEVAKRASYF--GLEVSQIRVFGLPIRPSFVRAV------ISKDNLRLELQMDPILPAVLLMGGGEGMGPV 283 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~l~~~--gi~~~~i~v~g~pv~~~~~~~~------~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~ 283 (462)
..+++++.+......+... .+...++.++...++.+...+. ..++..|...+..... +++....+...++.
T Consensus 209 ~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d-~~~~siN~~~pgkd 287 (495)
T KOG0853|consen 209 LAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGID-RFFPSINRFEPGKD 287 (495)
T ss_pred ccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccc-eEeeeeeecCCCCC
Confidence 4567788887777666543 3344446666666765543320 1112223333443222 23333333444433
Q ss_pred HHHHHHHHHhhhcccCC--CCCceEEEEccCC-------H------HHHHHHhhccCC-CCeEEeccchhHHHHHHhcch
Q 012492 284 KETAMALGESLLDKETG--RPIGQLIIICGRN-------R------TLASTLQSEEWK-IPVKVRGFETQMEKWMGACDC 347 (462)
Q Consensus 284 ~~~l~~l~~~l~~~~~~--~~~~~~lvv~G~~-------~------~l~~~~~~~~~~-~~V~~~g~~~~~~~l~~~aD~ 347 (462)
..++......+.+.... .+..+ ++++|+. . ++.+.++++++. +.+.|+....+...+..+||.
T Consensus 288 ~~l~l~a~~~~~~~i~~~~~~~~h-l~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt 366 (495)
T KOG0853|consen 288 QDLALPAFTLLHDSIPEPSISSEH-LVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADT 366 (495)
T ss_pred ceeehhhHHhhhcccCCCCCCceE-EEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhc
Confidence 33222222333332211 12334 3445511 1 245566677764 556676776655556655554
Q ss_pred ---heecCC---hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCC-HH---HHHHHHHHHhcCCHHHHHHH
Q 012492 348 ---IITKAG---PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRS-PK---ETARIVTEWFSTKTDELKRM 417 (462)
Q Consensus 348 ---vV~~sg---~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~-~~---~la~~i~~ll~~d~~~~~~m 417 (462)
++.+++ |.|++|||+||+|||+++.++.-+. +++.-.|+.++. ++ .+++++.++. .||+++.+|
T Consensus 367 ~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~Ei-----V~~~~tG~l~dp~~e~~~~~a~~~~kl~-~~p~l~~~~ 440 (495)
T KOG0853|consen 367 KGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEI-----VVHGVTGLLIDPGQEAVAELADALLKLR-RDPELWARM 440 (495)
T ss_pred ceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEE-----EEcCCcceeeCCchHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 334544 9999999999999999997654332 333345887764 33 4899999999 799999999
Q ss_pred HHHHHhhcCC-cHHHHHHHHHHHHHhccC
Q 012492 418 SENALKLAQP-EAVVDIVKDIHDLAAQRG 445 (462)
Q Consensus 418 ~~~a~~~~~~-~~~~~ia~~i~~l~~~~~ 445 (462)
++++++..+. |+|..+.+.|.+.+.+-.
T Consensus 441 ~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 441 GKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 9999999876 899999999998887543
No 120
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.3e-08 Score=95.47 Aligned_cols=269 Identities=19% Similarity=0.255 Sum_probs=161.6
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC----------CCc---------ccccCCCcEEEE
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT----------CHP---------TWFHPRVNRCYC 218 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~----------~~~---------~~~~~~~d~~i~ 218 (462)
.++-...||+|+...|..-.. +.++...+...+.+++.=-|.+.- .|+ ..+-+.+|..+|
T Consensus 97 aL~~~~~~~~ilvQNPP~iPt-liv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~a~~nLc 175 (444)
T KOG2941|consen 97 ALFVLRPPDIILVQNPPSIPT-LIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKLADYNLC 175 (444)
T ss_pred HHHhccCCcEEEEeCCCCCch-HHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcccccchh
Confidence 345577899998888653221 222222111135666543343321 111 123467889999
Q ss_pred cCHHHHHHHHHc-CCCCCcEEEcCCC-----CCh---hhhcc-----------cC----ChHHHHHHcC-----CCCCCc
Q 012492 219 PSKEVAKRASYF-GLEVSQIRVFGLP-----IRP---SFVRA-----------VI----SKDNLRLELQ-----MDPILP 269 (462)
Q Consensus 219 ~s~~~~~~l~~~-gi~~~~i~v~g~p-----v~~---~~~~~-----------~~----~~~~~r~~l~-----l~~~~~ 269 (462)
++..+++++.+. |+.+.++.+--.| ++. .|..- +. ++..+-+++. ..++.|
T Consensus 176 VT~AMr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~p 255 (444)
T KOG2941|consen 176 VTKAMREDLIQNWGINRAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPERP 255 (444)
T ss_pred hHHHHHHHHHHhcCCceeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCCC
Confidence 999999999875 8754444433222 111 01110 00 1111112221 234677
Q ss_pred EEEEEeCCCCCc-cHHHHHHHHH---HhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEE-eccc--hhHH
Q 012492 270 AVLLMGGGEGMG-PVKETAMALG---ESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKV-RGFE--TQME 339 (462)
Q Consensus 270 ~iLv~gG~~~~~-~~~~~l~~l~---~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~-~g~~--~~~~ 339 (462)
.++|+..+.... ++.-++.++. +.+.+.....|.. +.++.|.++ .+.++++++.+. +|.+ ..|. +|.+
T Consensus 256 allvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~l-lciITGKGPlkE~Y~~~I~~~~~~-~v~~~tpWL~aEDYP 333 (444)
T KOG2941|consen 256 ALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSL-LCIITGKGPLKEKYSQEIHEKNLQ-HVQVCTPWLEAEDYP 333 (444)
T ss_pred eEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcE-EEEEcCCCchhHHHHHHHHHhccc-ceeeeecccccccch
Confidence 888887777653 3333333332 1222211123554 456778876 255667766553 4544 4665 8999
Q ss_pred HHHHhcchhee----cCC---hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCC-ceeeeCCHHHHHHHHHHHhc---
Q 012492 340 KWMGACDCIIT----KAG---PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNG-AGVFTRSPKETARIVTEWFS--- 408 (462)
Q Consensus 340 ~l~~~aD~vV~----~sg---~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G-~g~~~~~~~~la~~i~~ll~--- 408 (462)
.+++.||+=|+ +|| ++-+....-||+|+++.++. ....|+++| .|.+..|.+++++++..++.
T Consensus 334 ~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk------cl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp 407 (444)
T KOG2941|consen 334 KLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK------CLDELVKHGENGLVFEDSEELAEQLQMLFKNFP 407 (444)
T ss_pred hHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch------hHHHHHhcCCCceEeccHHHHHHHHHHHHhcCC
Confidence 99999999663 456 89999999999999999874 344577776 68889999999999999994
Q ss_pred CCHHHHHHHHHHHHhhcC---CcHHHHHHH
Q 012492 409 TKTDELKRMSENALKLAQ---PEAVVDIVK 435 (462)
Q Consensus 409 ~d~~~~~~m~~~a~~~~~---~~~~~~ia~ 435 (462)
+|...+.++++++++..+ ..+|++++.
T Consensus 408 ~~a~~l~~lkkn~~e~~e~RW~~~W~~~~~ 437 (444)
T KOG2941|consen 408 DNADELNQLKKNLREEQELRWDESWERTAL 437 (444)
T ss_pred CCHHHHHHHHHhhHHHHhhhHHHHHHHhhh
Confidence 277888888888877632 345555554
No 121
>PLN02534 UDP-glycosyltransferase
Probab=99.19 E-value=1.5e-08 Score=103.87 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=113.9
Q ss_pred HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH---HHH-----HHHhhccCCCC
Q 012492 257 NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR---TLA-----STLQSEEWKIP 328 (462)
Q Consensus 257 ~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~---~l~-----~~~~~~~~~~~ 328 (462)
...+.+.-.+...+|+|..|+...-...+ +.+++..|.. .+..|+|++.... ... +...+.-...+
T Consensus 272 ~cl~wLd~~~~~sVvyvsfGS~~~~~~~q-~~e~a~gl~~-----~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g 345 (491)
T PLN02534 272 QCLEWLDSMKPRSVIYACLGSLCRLVPSQ-LIELGLGLEA-----SKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRG 345 (491)
T ss_pred HHHHHHhcCCCCceEEEEecccccCCHHH-HHHHHHHHHh-----CCCCEEEEEecCccccchhhhcCchhhHHhhccCC
Confidence 34556665555688999998876433333 3333344433 1236888886321 111 11121112457
Q ss_pred eEEeccchhHHHHHHhcch--heecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHC-Cceeee------------
Q 012492 329 VKVRGFETQMEKWMGACDC--IITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN-GAGVFT------------ 393 (462)
Q Consensus 329 V~~~g~~~~~~~l~~~aD~--vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~-G~g~~~------------ 393 (462)
+.+.+|.++ .++++.+++ ||+++|.++++||+++|+|+|+.|...+| ..|+..+++. |.|+-+
T Consensus 346 ~~v~~w~pq-~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq-~~na~~~~e~~~vGv~~~~~~~~~~~~~~ 423 (491)
T PLN02534 346 LLIKGWAPQ-VLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQ-FLNEKLIVEVLRIGVRVGVEVPVRWGDEE 423 (491)
T ss_pred eeccCCCCH-HHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccH-HHHHHHHHHhhcceEEecccccccccccc
Confidence 888899987 579988887 99999999999999999999999986665 4598888743 554422
Q ss_pred -----CCHHHHHHHHHHHhcC-C---HHHH---HHHHHHHHhhcCC--cHHHHHHHHHHHHHhccC
Q 012492 394 -----RSPKETARIVTEWFST-K---TDEL---KRMSENALKLAQP--EAVVDIVKDIHDLAAQRG 445 (462)
Q Consensus 394 -----~~~~~la~~i~~ll~~-d---~~~~---~~m~~~a~~~~~~--~~~~~ia~~i~~l~~~~~ 445 (462)
-+.+++++++.+++.. . .+.| +++++.+++-... .+..++.+.+.++..|++
T Consensus 424 ~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~~~~ 489 (491)
T PLN02534 424 RVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLKQQS 489 (491)
T ss_pred cccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 2467899999999931 1 2222 2233444433332 345677777777776654
No 122
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.15 E-value=1e-07 Score=89.56 Aligned_cols=268 Identities=13% Similarity=0.074 Sum_probs=161.7
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC------------CC----------cc-------c
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT------------CH----------PT-------W 208 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~------------~~----------~~-------~ 208 (462)
+.+-++.||+-|-+.+++-..|+ -+.. .++|++++.|=..- .. .+ |
T Consensus 144 Eai~r~~Pdi~IDtMGY~fs~p~--~r~l---~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~ 218 (465)
T KOG1387|consen 144 EAIIRFPPDIFIDTMGYPFSYPI--FRRL---RRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQS 218 (465)
T ss_pred HHHHhCCchheEecCCCcchhHH--HHHH---ccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHh
Confidence 55678999999988876554432 2322 38999988762110 00 01 1
Q ss_pred ccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCC-CCCcEEEEEeCCCCCccHHHHH
Q 012492 209 FHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMD-PILPAVLLMGGGEGMGPVKETA 287 (462)
Q Consensus 209 ~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~-~~~~~iLv~gG~~~~~~~~~~l 287 (462)
.-..+|.+++.|..+.+-+... -...+..++.+|.+.+ .++...+-. .+.+.+|..|.-.+.++.. .+
T Consensus 219 ~G~~ad~vm~NssWT~nHI~qi-W~~~~~~iVyPPC~~e---------~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~L 287 (465)
T KOG1387|consen 219 AGSKADIVMTNSSWTNNHIKQI-WQSNTCSIVYPPCSTE---------DLKSKFGTEGERENQLLSLAQFRPEKNHK-IL 287 (465)
T ss_pred ccccceEEEecchhhHHHHHHH-hhccceeEEcCCCCHH---------HHHHHhcccCCcceEEEEEeecCcccccH-HH
Confidence 1245677888877766554432 1124566676676543 222222222 2334455555444444433 33
Q ss_pred HHHHHhhhcccC--CCCCceEEEEccC-CHH-------HHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheec----
Q 012492 288 MALGESLLDKET--GRPIGQLIIICGR-NRT-------LASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITK---- 351 (462)
Q Consensus 288 ~~l~~~l~~~~~--~~~~~~~lvv~G~-~~~-------l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~---- 351 (462)
+..+-.+...-. .-++++++++++- +++ +.+..+++.++.+|.|.-.+ +++.+++..|.+-|..
T Consensus 288 ql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNE 367 (465)
T KOG1387|consen 288 QLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNE 367 (465)
T ss_pred HHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhh
Confidence 322111111000 1134565554432 221 33344456788899987554 6899999999987653
Q ss_pred CChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHH
Q 012492 352 AGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVV 431 (462)
Q Consensus 352 sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~ 431 (462)
-.|..+.|+||+|+=.|+.+..+ +..+.+........|++..+.++.++++.+++..|++.|..|+++||+...+++-.
T Consensus 368 HFGIsVVEyMAAGlIpi~h~SgG-P~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~ 446 (465)
T KOG1387|consen 368 HFGISVVEYMAAGLIPIVHNSGG-PLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL 446 (465)
T ss_pred hcchhHHHHHhcCceEEEeCCCC-CceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH
Confidence 24788999999999888877643 22333333333456888899999999999988778888999999999988888777
Q ss_pred HHHHHHHHHHh
Q 012492 432 DIVKDIHDLAA 442 (462)
Q Consensus 432 ~ia~~i~~l~~ 442 (462)
...+.+.+.+.
T Consensus 447 ~F~kd~~~~i~ 457 (465)
T KOG1387|consen 447 KFDKDWENPIC 457 (465)
T ss_pred HHHHhHhHHHH
Confidence 77666665443
No 123
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.13 E-value=3.6e-09 Score=114.71 Aligned_cols=276 Identities=11% Similarity=0.074 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHhhCC-CEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC------ccc---c--cCCCc
Q 012492 147 AMAAYYAKEVEAGLMEYKP-DIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH------PTW---F--HPRVN 214 (462)
Q Consensus 147 ~~~~~~~~~l~~~l~~~kP-DvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~------~~~---~--~~~~d 214 (462)
..+..++.++.+ ..+| |+|-++.......|.. .|.++ ++.++-.+.|-..+.. |.+ + .-.+|
T Consensus 118 ~vN~~fA~~~~~---~~~~~d~vwvhDYhl~l~p~~-lr~~~--~~~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~D 191 (726)
T PRK14501 118 RVNQRFAEAIAA---IARPGDVVWVHDYQLMLLPAM-LRERL--PDARIGFFLHIPFPSFEVFRLLPWREEILEGLLGAD 191 (726)
T ss_pred HHHHHHHHHHHH---hcCCCCEEEEeCchhhhHHHH-HHhhC--CCCcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCC
Confidence 345666766644 4445 6666666555544433 34333 4566655555433211 100 0 12467
Q ss_pred EEEEcCHHHHHHHHH-----cCCC-----------CCcEEEcCCCCChhhhcccC-Ch------HHHHHHcCCCCCCcEE
Q 012492 215 RCYCPSKEVAKRASY-----FGLE-----------VSQIRVFGLPIRPSFVRAVI-SK------DNLRLELQMDPILPAV 271 (462)
Q Consensus 215 ~~i~~s~~~~~~l~~-----~gi~-----------~~~i~v~g~pv~~~~~~~~~-~~------~~~r~~l~l~~~~~~i 271 (462)
.+-..+....+.+.+ .+.+ ..++.+++++|+...+.+.. ++ +.+|+.+ +++++|
T Consensus 192 ligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~~i 268 (726)
T PRK14501 192 LIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGRKII 268 (726)
T ss_pred eEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCCEEE
Confidence 777777765555432 1321 12477889999887654321 11 1233433 345555
Q ss_pred EEEeCCCCCccHHHHHHHHHHhhhcccCCCCC----ceEEEEcc---CC-H---HHHHHHhhc----c-C-----CCCe-
Q 012492 272 LLMGGGEGMGPVKETAMALGESLLDKETGRPI----GQLIIICG---RN-R---TLASTLQSE----E-W-----KIPV- 329 (462)
Q Consensus 272 Lv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~lvv~G---~~-~---~l~~~~~~~----~-~-----~~~V- 329 (462)
+.+|+....|++...++++...+.+ +|+ ++++++++ .+ . ++++.++++ + . ...|
T Consensus 269 l~VgRl~~~Kgi~~~l~A~~~ll~~----~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~ 344 (726)
T PRK14501 269 LSIDRLDYTKGIPRRLLAFERFLEK----NPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIH 344 (726)
T ss_pred EEecCcccccCHHHHHHHHHHHHHh----CccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEE
Confidence 5555555567788777776444432 454 45555542 22 1 234444332 1 1 1123
Q ss_pred EEeccc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCC----EEEecCCCCccccchHHHHHCCceeee--CCHH
Q 012492 330 KVRGFE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLP----IILNDYIPGQEKGNVPYVVDNGAGVFT--RSPK 397 (462)
Q Consensus 330 ~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~P----vI~~~~~~~~~~~n~~~l~~~G~g~~~--~~~~ 397 (462)
.+.|++ +++..+|+.||+++.+|- +.+++|||+||+| +|++...++ +..+. + |+++ .|++
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~-----~~~l~--~-~llv~P~d~~ 416 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA-----AAELA--E-ALLVNPNDIE 416 (726)
T ss_pred EEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccch-----hHHhC--c-CeEECCCCHH
Confidence 355655 799999999999998873 8999999999664 444443222 22232 2 4554 4799
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 398 ETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 398 ~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
+++++|.++|..+++.+++..+++++.+..++++..++.+.+.+++
T Consensus 417 ~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 417 GIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999434455555556788888888999888887776643
No 124
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.09 E-value=1.9e-09 Score=112.40 Aligned_cols=172 Identities=17% Similarity=0.140 Sum_probs=106.4
Q ss_pred HHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccc
Q 012492 256 DNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE 335 (462)
Q Consensus 256 ~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~ 335 (462)
+++...+.-+.++.+|+++.|+.....-.+.+..+++.+.+ .|. +++|....... .. +..|+.+..|.
T Consensus 264 ~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~----~~~-~~iW~~~~~~~--~~-----l~~n~~~~~W~ 331 (500)
T PF00201_consen 264 EELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFEN----LPQ-RFIWKYEGEPP--EN-----LPKNVLIVKWL 331 (500)
T ss_dssp HHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHC----STT-EEEEEETCSHG--CH-----HHTTEEEESS-
T ss_pred cccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhh----CCC-ccccccccccc--cc-----ccceEEEeccc
Confidence 44444443323567899998887643333445566666654 244 78888766421 22 23589999999
Q ss_pred hhHHHHHH--hcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcC
Q 012492 336 TQMEKWMG--ACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFST 409 (462)
Q Consensus 336 ~~~~~l~~--~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~ 409 (462)
++. ++|+ ..++||+++|.+++.||+++|+|+|+.|..++| ..|+..+++.|.|+.++ +.+.+.++|.++| +
T Consensus 332 PQ~-~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ-~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl-~ 408 (500)
T PF00201_consen 332 PQN-DLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQ-PRNAARVEEKGVGVVLDKNDLTEEELRAAIREVL-E 408 (500)
T ss_dssp -HH-HHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTH-HHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHH-H
T ss_pred cch-hhhhcccceeeeeccccchhhhhhhccCCccCCCCcccC-CccceEEEEEeeEEEEEecCCcHHHHHHHHHHHH-h
Confidence 864 7886 557899999999999999999999999987665 56999999999998775 4789999999999 7
Q ss_pred CHHHHHHHHHHHHhhcC-CcHH-HHHHHHHHHHHh
Q 012492 410 KTDELKRMSENALKLAQ-PEAV-VDIVKDIHDLAA 442 (462)
Q Consensus 410 d~~~~~~m~~~a~~~~~-~~~~-~~ia~~i~~l~~ 442 (462)
|+..+++..+-++.+.+ +..+ ++.+.++|-.++
T Consensus 409 ~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~ 443 (500)
T PF00201_consen 409 NPSYKENAKRLSSLFRDRPISPLERAVWWIEYVAR 443 (500)
T ss_dssp SHHHHHHHHHHHHTTT-------------------
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 88877777766655554 3444 566666665554
No 125
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.08 E-value=3.5e-09 Score=109.42 Aligned_cols=152 Identities=15% Similarity=0.201 Sum_probs=116.8
Q ss_pred CCCCccHHHHHHHHHHhhhcccCCCCCceEEEE-ccCCH----HHHHHHhhccCC-------------------------
Q 012492 277 GEGMGPVKETAMALGESLLDKETGRPIGQLIII-CGRNR----TLASTLQSEEWK------------------------- 326 (462)
Q Consensus 277 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv-~G~~~----~l~~~~~~~~~~------------------------- 326 (462)
++..+.+.+++.++++.+.+ .|++.+.+. .|... .+.+.++++++.
T Consensus 329 rL~ek~~~~~I~av~~~~~~----~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (519)
T TIGR03713 329 GLSDEELQQILQQLLQYILK----NPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEE 404 (519)
T ss_pred CCChHHHHHHHHHHHHHHhh----CCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhh
Confidence 45666777888887766554 588876532 23321 233344444333
Q ss_pred ----CCeEEeccch--hHHHHHHhcchheecC---ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHH
Q 012492 327 ----IPVKVRGFET--QMEKWMGACDCIITKA---GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPK 397 (462)
Q Consensus 327 ----~~V~~~g~~~--~~~~l~~~aD~vV~~s---g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~ 397 (462)
.+|.|.|+.. ++.+.|..+.++|..| |..+.+||++.|+|+| +.+ ...++.+...|+++++..
T Consensus 405 ~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI--nyg------~~~~V~d~~NG~li~d~~ 476 (519)
T TIGR03713 405 QKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI--NKV------ETDYVEHNKNGYIIDDIS 476 (519)
T ss_pred cccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee--ecC------CceeeEcCCCcEEeCCHH
Confidence 6899999987 9999999999999766 3339999999999999 322 222455556799999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 012492 398 ETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 398 ~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~ 441 (462)
++++++..+| .+++.++++...+.+.+++++.++|++.|.+++
T Consensus 477 ~l~~al~~~L-~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 477 ELLKALDYYL-DNLKNWNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred HHHHHHHHHH-hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 9999999999 799999999999999999999999999998863
No 126
>PLN02764 glycosyltransferase family protein
Probab=99.01 E-value=1.5e-08 Score=102.69 Aligned_cols=180 Identities=13% Similarity=0.063 Sum_probs=111.3
Q ss_pred CcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCC-
Q 012492 235 SQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRN- 313 (462)
Q Consensus 235 ~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~- 313 (462)
.++..+|..+... ......+++..+.|.-.+...+++++.|+...-...++. +++..|.. .+..++|+....
T Consensus 225 ~~v~~VGPL~~~~-~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~-ela~gL~~-----s~~pflwv~r~~~ 297 (453)
T PLN02764 225 KKVLLTGPVFPEP-DKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQ-ELCLGMEL-----TGSPFLVAVKPPR 297 (453)
T ss_pred CcEEEeccCccCc-cccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHH-HHHHHHHh-----CCCCeEEEEeCCC
Confidence 3688888543211 000012345566776666778999999998653333333 33333322 133456665531
Q ss_pred ---H---HHHHHHhhccCCCCeEEeccchhHHHHHHhc--chheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHH
Q 012492 314 ---R---TLASTLQSEEWKIPVKVRGFETQMEKWMGAC--DCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVV 385 (462)
Q Consensus 314 ---~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~a--D~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~ 385 (462)
. .+.+..++.-....+.+.+|.++. ++++.. ++||+++|.++++||+++|+|+|+.|...+| ..|++.++
T Consensus 298 ~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~-~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ-~~na~~l~ 375 (453)
T PLN02764 298 GSSTIQEALPEGFEERVKGRGVVWGGWVQQP-LILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQ-VLNTRLLS 375 (453)
T ss_pred CCcchhhhCCcchHhhhccCCcEEeCCCCHH-HHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccch-HHHHHHHH
Confidence 1 111111111113457777999764 788774 5699999999999999999999999986665 45999986
Q ss_pred H-CCceeeeC-------CHHHHHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 012492 386 D-NGAGVFTR-------SPKETARIVTEWFSTKT-DELKRMSENALKL 424 (462)
Q Consensus 386 ~-~G~g~~~~-------~~~~la~~i~~ll~~d~-~~~~~m~~~a~~~ 424 (462)
+ .|+|+.+. +.+++.+++.++| +++ +..+++++++++.
T Consensus 376 ~~~g~gv~~~~~~~~~~~~e~i~~av~~vm-~~~~~~g~~~r~~a~~~ 422 (453)
T PLN02764 376 DELKVSVEVAREETGWFSKESLRDAINSVM-KRDSEIGNLVKKNHTKW 422 (453)
T ss_pred HHhceEEEeccccCCccCHHHHHHHHHHHh-cCCchhHHHHHHHHHHH
Confidence 4 68887641 5789999999999 453 4445555555443
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.00 E-value=1.2e-09 Score=92.62 Aligned_cols=123 Identities=26% Similarity=0.356 Sum_probs=74.7
Q ss_pred EEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhcchhee
Q 012492 271 VLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIIT 350 (462)
Q Consensus 271 iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~ 350 (462)
++.+|+....+++..++.++++.+.++ .|++++.++ |...+ .++++ ...+|++.|+++++.++|+.||+++.
T Consensus 5 i~~~g~~~~~k~~~~li~~~~~~l~~~---~p~~~l~i~-G~~~~---~l~~~-~~~~v~~~g~~~e~~~~l~~~dv~l~ 76 (135)
T PF13692_consen 5 IGYLGRIRPDKGLEELIEAALERLKEK---HPDIELIII-GNGPD---ELKRL-RRPNVRFHGFVEELPEILAAADVGLI 76 (135)
T ss_dssp EE--S-SSGGGTHHHHHH-HHHHHHHH---STTEEEEEE-CESS----HHCCH-HHCTEEEE-S-HHHHHHHHC-SEEEE
T ss_pred ccccccccccccccchhhhHHHHHHHH---CcCEEEEEE-eCCHH---HHHHh-cCCCEEEcCCHHHHHHHHHhCCEEEE
Confidence 333443334456666666354666553 577876665 44432 24433 24599999999999999999999987
Q ss_pred cC-----ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceee-eCCHHHHHHHHHHHh
Q 012492 351 KA-----GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVF-TRSPKETARIVTEWF 407 (462)
Q Consensus 351 ~s-----g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~-~~~~~~la~~i~~ll 407 (462)
+. .+++++|+|++|+|+|+++.. ...+....+.++. .+++++++++|.+++
T Consensus 77 p~~~~~~~~~k~~e~~~~G~pvi~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~i~~l~ 133 (135)
T PF13692_consen 77 PSRFNEGFPNKLLEAMAAGKPVIASDNG------AEGIVEEDGCGVLVANDPEELAEAIERLL 133 (135)
T ss_dssp -BSS-SCC-HHHHHHHCTT--EEEEHHH------CHCHS---SEEEE-TT-HHHHHHHHHHHH
T ss_pred EeeCCCcCcHHHHHHHHhCCCEEECCcc------hhhheeecCCeEEECCCHHHHHHHHHHHh
Confidence 64 268999999999999998861 1112333555554 457999999999998
No 128
>PLN02554 UDP-glycosyltransferase family protein
Probab=98.99 E-value=6.5e-08 Score=99.75 Aligned_cols=154 Identities=23% Similarity=0.178 Sum_probs=100.9
Q ss_pred HHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH---------------H-HHHH
Q 012492 256 DNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR---------------T-LAST 319 (462)
Q Consensus 256 ~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~---------------~-l~~~ 319 (462)
++..+.+.-.+...+|+++.|+...-.. +.+.+++..|.. .+.+++|+++... + +.+.
T Consensus 262 ~~~~~wLd~~~~~svvyvsfGS~~~~~~-~~~~~la~~l~~-----~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~ 335 (481)
T PLN02554 262 SEILRWLDEQPPKSVVFLCFGSMGGFSE-EQAREIAIALER-----SGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEG 335 (481)
T ss_pred hHHHHHHhcCCCCcEEEEeccccccCCH-HHHHHHHHHHHH-----cCCCeEEEEcCCcccccccccccccchhhhCChH
Confidence 3455555444445688898888743222 244455555543 2346788775310 0 1111
Q ss_pred HhhccCCCCeEEeccchhHHHHH--HhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHH-HHHCCceeeeC--
Q 012492 320 LQSEEWKIPVKVRGFETQMEKWM--GACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPY-VVDNGAGVFTR-- 394 (462)
Q Consensus 320 ~~~~~~~~~V~~~g~~~~~~~l~--~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~-l~~~G~g~~~~-- 394 (462)
..+ ...+|+.+.+|.++. +++ .++.+||+++|.++++||+.+|+|+|+.|...+| ..|+.. +.+.|+|+.+.
T Consensus 336 ~~~-r~~~~g~v~~W~PQ~-~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ-~~Na~~~v~~~g~Gv~l~~~ 412 (481)
T PLN02554 336 FLD-RTKDIGKVIGWAPQV-AVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQ-KFNAFEMVEELGLAVEIRKY 412 (481)
T ss_pred HHH-HhccCceEEeeCCHH-HHhCCcccCcccccCccchHHHHHHcCCCEEecCccccc-hhhHHHHHHHhCceEEeecc
Confidence 111 023577778999764 788 6777899999999999999999999999986655 569954 66779887652
Q ss_pred -------------CHHHHHHHHHHHhcCCHHHHHHHH
Q 012492 395 -------------SPKETARIVTEWFSTKTDELKRMS 418 (462)
Q Consensus 395 -------------~~~~la~~i~~ll~~d~~~~~~m~ 418 (462)
+.+++.++|.++|.++++.|++..
T Consensus 413 ~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~ 449 (481)
T PLN02554 413 WRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVK 449 (481)
T ss_pred ccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHH
Confidence 467899999999932666555433
No 129
>PLN02167 UDP-glycosyltransferase family protein
Probab=98.97 E-value=4.2e-08 Score=101.02 Aligned_cols=179 Identities=21% Similarity=0.169 Sum_probs=110.7
Q ss_pred HHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH--------HHHHHhhccCCC
Q 012492 256 DNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT--------LASTLQSEEWKI 327 (462)
Q Consensus 256 ~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~--------l~~~~~~~~~~~ 327 (462)
+++.+.+.-.+.+.+|+++.|+...-.. +.+.+++..|.. .+..++|+.+.... +.+...+ ...+
T Consensus 268 ~~~~~wld~~~~~svvyvsfGS~~~~~~-~~~~ela~~l~~-----~~~~flw~~~~~~~~~~~~~~~lp~~~~e-r~~~ 340 (475)
T PLN02167 268 DRIMRWLDDQPESSVVFLCFGSLGSLPA-PQIKEIAQALEL-----VGCRFLWSIRTNPAEYASPYEPLPEGFMD-RVMG 340 (475)
T ss_pred HHHHHHHhcCCCCceEEEeecccccCCH-HHHHHHHHHHHh-----CCCcEEEEEecCcccccchhhhCChHHHH-Hhcc
Confidence 3455666555556688898888754322 234455555543 24568888764210 1111111 1123
Q ss_pred CeEEeccchhHHHHHHh--cchheecCChhhHHHHHHhCCCEEEecCCCCccccchHH-HHHCCceeeeC----------
Q 012492 328 PVKVRGFETQMEKWMGA--CDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPY-VVDNGAGVFTR---------- 394 (462)
Q Consensus 328 ~V~~~g~~~~~~~l~~~--aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~-l~~~G~g~~~~---------- 394 (462)
+..+.+|.++ ..+++. +++||+++|.++++||+++|+|+|+.|...+| ..|+.. +.+.|+|+.+.
T Consensus 341 rg~v~~w~PQ-~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ-~~na~~~~~~~g~g~~~~~~~~~~~~~~ 418 (475)
T PLN02167 341 RGLVCGWAPQ-VEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQ-QLNAFTMVKELGLAVELRLDYVSAYGEI 418 (475)
T ss_pred CeeeeccCCH-HHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccc-hhhHHHHHHHhCeeEEeecccccccCCc
Confidence 4467799865 478876 55799999999999999999999999987665 459876 55678887552
Q ss_pred -CHHHHHHHHHHHhcCCHHHHHH---HHHHHHhhcCC-c-HHHHHHHHHHHHHhc
Q 012492 395 -SPKETARIVTEWFSTKTDELKR---MSENALKLAQP-E-AVVDIVKDIHDLAAQ 443 (462)
Q Consensus 395 -~~~~la~~i~~ll~~d~~~~~~---m~~~a~~~~~~-~-~~~~ia~~i~~l~~~ 443 (462)
+.+++++++.++|.++.+.|++ +++.+++-..+ . +..++-+.+.++...
T Consensus 419 ~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 419 VKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLGD 473 (475)
T ss_pred ccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 4678999999999433233433 33344433333 2 334665555555443
No 130
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.95 E-value=7.8e-07 Score=90.76 Aligned_cols=193 Identities=12% Similarity=0.123 Sum_probs=121.9
Q ss_pred EEEcCCCCChhhhccc-C------ChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCC----ce
Q 012492 237 IRVFGLPIRPSFVRAV-I------SKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPI----GQ 305 (462)
Q Consensus 237 i~v~g~pv~~~~~~~~-~------~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~ 305 (462)
|.+++++|++..+... . ..+.+|++++ ++++|+-+++....|++.+.+.++-+.|.+ +|+ +.
T Consensus 250 v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~----~Pe~~gkv~ 322 (487)
T TIGR02398 250 LGAHPVGTDPERIRSALAAASIREMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLER----RPELLGKVT 322 (487)
T ss_pred EEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHh----CccccCceE
Confidence 5667778887654321 1 1235677776 455555555555568888888777544443 565 35
Q ss_pred EEEEccCC----H---HHHHHHhh-----------ccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHH
Q 012492 306 LIIICGRN----R---TLASTLQS-----------EEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEAL 361 (462)
Q Consensus 306 ~lvv~G~~----~---~l~~~~~~-----------~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAl 361 (462)
++.++.+. . ++++.+++ .++..-+.+.+.+ +++..+|+.||+++.+|- ..+..|++
T Consensus 323 Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyv 402 (487)
T TIGR02398 323 LVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYV 402 (487)
T ss_pred EEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHH
Confidence 55555442 1 23444443 1333334556775 688999999999988763 77889999
Q ss_pred HhCC----CEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHH
Q 012492 362 IRGL----PIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVK 435 (462)
Q Consensus 362 a~G~----PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~ 435 (462)
+|+. |+|++...+ .+..+ ..++.++ |+++++++|.+.|...++.|++-.++.++....+....=++
T Consensus 403 a~~~~~~GvLILSefaG-----aa~~l---~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~ 474 (487)
T TIGR02398 403 AAQGLLDGVLVLSEFAG-----AAVEL---KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQRWAD 474 (487)
T ss_pred hhhcCCCCCEEEecccc-----chhhc---CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 9999 899988743 22233 2345554 79999999999996566666555556666676666555555
Q ss_pred HHHHHHhcc
Q 012492 436 DIHDLAAQR 444 (462)
Q Consensus 436 ~i~~l~~~~ 444 (462)
.+.+-+..+
T Consensus 475 ~fl~~l~~~ 483 (487)
T TIGR02398 475 EFLAAVSPQ 483 (487)
T ss_pred HHHHHhhhc
Confidence 554444443
No 131
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=1.5e-07 Score=91.27 Aligned_cols=211 Identities=17% Similarity=0.180 Sum_probs=135.8
Q ss_pred CcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCC--cEEEEEeCCCCCccHHHHHHHH
Q 012492 213 VNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPIL--PAVLLMGGGEGMGPVKETAMAL 290 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~--~~iLv~gG~~~~~~~~~~l~~l 290 (462)
.+.++..+............. .++.+++++++....... ..++.++. ..++.+|.....++...++.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~ 221 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVP-NKIVVIPNGIDTEKFAPA--------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAA 221 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCC-CCceEecCCcCHHHcCcc--------ccCCCcccCceEEEEeeccChhcCHHHHHHHH
Confidence 566777777664444444432 367788888877654421 12233333 3555665533335565555544
Q ss_pred HHhhhcccCCCCCceEEEEccCCH----HHHHHHhhccCCCCeEEeccch--hHHHHHHhcchheecC----ChhhHHHH
Q 012492 291 GESLLDKETGRPIGQLIIICGRNR----TLASTLQSEEWKIPVKVRGFET--QMEKWMGACDCIITKA----GPGTIAEA 360 (462)
Q Consensus 291 ~~~l~~~~~~~~~~~~lvv~G~~~----~l~~~~~~~~~~~~V~~~g~~~--~~~~l~~~aD~vV~~s----g~~t~~EA 360 (462)
..+.+. .+++.+++ +|.+. .+....++++...++.+.|+.+ ++..+++.||+++.++ .+.+++||
T Consensus 222 -~~~~~~---~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea 296 (381)
T COG0438 222 -AKLKKR---GPDIKLVI-VGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEA 296 (381)
T ss_pred -HHhhhh---cCCeEEEE-EcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHH
Confidence 455431 22244444 44443 2445555556678899999985 7888999999999884 36789999
Q ss_pred HHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHHH
Q 012492 361 LIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKDI 437 (462)
Q Consensus 361 la~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i 437 (462)
+++|+|+|+++.+... +.+.+.+.|+++. +.+++++++..++ ++++.++.+.+.+++.. ..++++++++.+
T Consensus 297 ~a~g~pvi~~~~~~~~-----e~~~~~~~g~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (381)
T COG0438 297 MAAGTPVIASDVGGIP-----EVVEDGETGLLVPPGDVEELADALEQLL-EDPELREELGEAARERVEEEFSWERIAEQL 370 (381)
T ss_pred HhcCCcEEECCCCChH-----HHhcCCCceEecCCCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999875322 2233332354443 4799999999999 67777888887444444 688999999888
Q ss_pred HHHHhc
Q 012492 438 HDLAAQ 443 (462)
Q Consensus 438 ~~l~~~ 443 (462)
.+++..
T Consensus 371 ~~~~~~ 376 (381)
T COG0438 371 LELYEE 376 (381)
T ss_pred HHHHHH
Confidence 877654
No 132
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.92 E-value=4.6e-06 Score=84.30 Aligned_cols=342 Identities=13% Similarity=0.086 Sum_probs=176.5
Q ss_pred CeEEEEec-C-CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchh--h-HHHHHHHHhhhH---HHHHHhhc
Q 012492 63 KNVLILMS-D-TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLND--M-ERSYKFMVKHVQ---LWKVAFHS 134 (462)
Q Consensus 63 ~kIli~~~-~-~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~--~-~~~y~~~~~~~~---l~~~~~~~ 134 (462)
|||+|.+. + -..|......++.+.|++..|+ .++.+.+..++.+.+.... + ...|...-+... +.+- ...
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~-~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~ 78 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPH-AEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGR-VKK 78 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCC-CeEEEEecCccchhhhcccccccchhhhhhhhcccccccchh-HHH
Confidence 79999862 2 2259999999999999999875 4667666555433321110 0 011110000000 0000 000
Q ss_pred C-CcchhhHHHHH-------HHHHHHHHHHHHHHHhh-CCCEEEECCccc-----c---hHHHHHHHHcCCCCCCeEEEE
Q 012492 135 T-SPKWIHSCYLA-------AMAAYYAKEVEAGLMEY-KPDIIISVHPLM-----Q---HIPLWVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 135 ~-~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~-kPDvVi~~~~~~-----~---~~~~~~~~~~~~~~~iP~v~~ 197 (462)
. ..++.+..+.. ..+......+..+++.. +-|++|+.++.. + ...+..++. .+.|++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l----~gkpv~l~ 154 (426)
T PRK10017 79 VLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFM----AKKPLYMI 154 (426)
T ss_pred HHHhhhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHH----cCCCEEEE
Confidence 0 00000000000 00000111222333333 369999877421 1 111223343 47898877
Q ss_pred ecCCCCCCc-------ccccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccC--C--h-HHHHHHcCCC
Q 012492 198 ITDLNTCHP-------TWFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVI--S--K-DNLRLELQMD 265 (462)
Q Consensus 198 ~~d~~~~~~-------~~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~--~--~-~~~r~~l~l~ 265 (462)
-....+... .|+.+.+|.+.+-.+...+.+.+.|++..++.+++-|+ |.-+.. + + ..+...++..
T Consensus 155 gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD~~S~~~Lk~lGv~~~~v~~~aDpA---F~L~~~~~~~~~~~~~~~~~~~~ 231 (426)
T PRK10017 155 GHSVGPFQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTA---WLVDHHTEDFTASYAVQHWLDVA 231 (426)
T ss_pred CCcCCCcCCHHHHHHHHHHHhcCCEEEEccHHHHHHHHHhCCCccceEEecChh---hhCCccccccccchhhhhhhccc
Confidence 776654433 23456789999988888888888899878888876443 221111 0 1 1112223333
Q ss_pred CCCcEEEEEeCCCC-C--------ccHHHHHHHHHHhhhcccCCCCCceEEEEc--------cCCHH-HHHHHhh-ccCC
Q 012492 266 PILPAVLLMGGGEG-M--------GPVKETAMALGESLLDKETGRPIGQLIIIC--------GRNRT-LASTLQS-EEWK 326 (462)
Q Consensus 266 ~~~~~iLv~gG~~~-~--------~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~--------G~~~~-l~~~~~~-~~~~ 326 (462)
.++++|.++...+. . ....+.+..+++.+.++ +.+++++. ++++. ..+.+.+ +...
T Consensus 232 ~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~-----g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~ 306 (426)
T PRK10017 232 AQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDE-----GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDP 306 (426)
T ss_pred ccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHC-----CCeEEEEecccCccCCCCchHHHHHHHHHhcccc
Confidence 45567777766543 1 12334454555555432 34444333 23332 2223322 2222
Q ss_pred CCeEEe-c-c-chhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceee-eC----CHHH
Q 012492 327 IPVKVR-G-F-ETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVF-TR----SPKE 398 (462)
Q Consensus 327 ~~V~~~-g-~-~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~-~~----~~~~ 398 (462)
.+++++ + + ..++..+++.||++|+. .-..++=|++.|+|+|...+.+ ....++.+.|..-. ++ +++.
T Consensus 307 ~~~~vi~~~~~~~e~~~iIs~~dl~ig~-RlHa~I~a~~~gvP~i~i~Y~~----K~~~~~~~lg~~~~~~~~~~l~~~~ 381 (426)
T PRK10017 307 ARYHVVMDELNDLEMGKILGACELTVGT-RLHSAIISMNFGTPAIAINYEH----KSAGIMQQLGLPEMAIDIRHLLDGS 381 (426)
T ss_pred cceeEecCCCChHHHHHHHhhCCEEEEe-cchHHHHHHHcCCCEEEeeehH----HHHHHHHHcCCccEEechhhCCHHH
Confidence 333332 2 2 24677999999999985 3355788999999999998742 23345555665432 22 4678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 012492 399 TARIVTEWFSTKTDELKRMSENALK 423 (462)
Q Consensus 399 la~~i~~ll~~d~~~~~~m~~~a~~ 423 (462)
+.+.+.+++++.++.++++.++..+
T Consensus 382 Li~~v~~~~~~r~~~~~~l~~~v~~ 406 (426)
T PRK10017 382 LQAMVADTLGQLPALNARLAEAVSR 406 (426)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 8889999994334445555544433
No 133
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=98.92 E-value=7.5e-08 Score=98.10 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=116.6
Q ss_pred CCcEEEEcCHHHHHHH-HH---cCCCCCcEEEcCCCCC-hhhhcc-cCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHH
Q 012492 212 RVNRCYCPSKEVAKRA-SY---FGLEVSQIRVFGLPIR-PSFVRA-VISKDNLRLELQMDPILPAVLLMGGGEGMGPVKE 285 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~l-~~---~gi~~~~i~v~g~pv~-~~~~~~-~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~ 285 (462)
.++.+++.|.+..+.- .+ ... ..++..+|.... +..... ..+.+...+.+.-.+.+.+|+++.|+...-.. +
T Consensus 203 ~~~~vlvNTf~eLE~~~~~~l~~~~-~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~-~ 280 (451)
T PLN02410 203 TASSVIINTASCLESSSLSRLQQQL-QIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEI-N 280 (451)
T ss_pred cCCEEEEeChHHhhHHHHHHHHhcc-CCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCH-H
Confidence 3566777765444321 11 111 136777774321 110000 01111223445544556789999998764333 3
Q ss_pred HHHHHHHhhhcccCCCCCceEEEEccCCH----H----HHHHHhhccCCCCeEEeccchhHHHHHHhcc--hheecCChh
Q 012492 286 TAMALGESLLDKETGRPIGQLIIICGRNR----T----LASTLQSEEWKIPVKVRGFETQMEKWMGACD--CIITKAGPG 355 (462)
Q Consensus 286 ~l~~l~~~l~~~~~~~~~~~~lvv~G~~~----~----l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD--~vV~~sg~~ 355 (462)
.+.+++..|.. .+..|+|++..+. . +.+..++ ....|..+.+|.++ .++++..+ +||+++|.+
T Consensus 281 q~~ela~gLe~-----s~~~FlWv~r~~~~~~~~~~~~lp~~f~e-r~~~~g~v~~w~PQ-~~iL~h~~v~~fvtH~G~n 353 (451)
T PLN02410 281 EVMETASGLDS-----SNQQFLWVIRPGSVRGSEWIESLPKEFSK-IISGRGYIVKWAPQ-KEVLSHPAVGGFWSHCGWN 353 (451)
T ss_pred HHHHHHHHHHh-----cCCCeEEEEccCcccccchhhcCChhHHH-hccCCeEEEccCCH-HHHhCCCccCeeeecCchh
Confidence 34445555543 1236788776321 1 1212111 13357788899976 46888755 599999999
Q ss_pred hHHHHHHhCCCEEEecCCCCccccchHHHHHC-CceeeeC---CHHHHHHHHHHHhcCCH
Q 012492 356 TIAEALIRGLPIILNDYIPGQEKGNVPYVVDN-GAGVFTR---SPKETARIVTEWFSTKT 411 (462)
Q Consensus 356 t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~-G~g~~~~---~~~~la~~i~~ll~~d~ 411 (462)
+++||+++|+|+|+.|...+| ..|++.+++. |+|+.+. +.+++++++.++| .++
T Consensus 354 S~~Ea~~~GvP~l~~P~~~DQ-~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm-~~~ 411 (451)
T PLN02410 354 STLESIGEGVPMICKPFSSDQ-KVNARYLECVWKIGIQVEGDLDRGAVERAVKRLM-VEE 411 (451)
T ss_pred HHHHHHHcCCCEEeccccccC-HHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHH-cCC
Confidence 999999999999999987665 5699998876 8887763 5789999999999 454
No 134
>PLN03004 UDP-glycosyltransferase
Probab=98.92 E-value=2.6e-08 Score=101.11 Aligned_cols=149 Identities=18% Similarity=0.177 Sum_probs=103.3
Q ss_pred HHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH----------H-HHHHHhhccCC
Q 012492 258 LRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR----------T-LASTLQSEEWK 326 (462)
Q Consensus 258 ~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~----------~-l~~~~~~~~~~ 326 (462)
..+.+.-.++..+|+|+.|+...-.. +.+.+++..|.. .+..|+|+..... . +.+..++.-..
T Consensus 260 c~~wLd~~~~~sVvyvsfGS~~~~~~-~q~~ela~gL~~-----s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~ 333 (451)
T PLN03004 260 CLNWLDSQPEKSVVFLCFGSLGLFSK-EQVIEIAVGLEK-----SGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTED 333 (451)
T ss_pred HHHHHHhCCCCceEEEEecccccCCH-HHHHHHHHHHHH-----CCCCEEEEEcCCccccccccchhhhCChHHHHhccC
Confidence 44555544456789999998854322 334445455543 1236888887421 0 11111111123
Q ss_pred CCeEEeccchhHHHHHHhcch--heecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHH-CCceeeeC-------CH
Q 012492 327 IPVKVRGFETQMEKWMGACDC--IITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD-NGAGVFTR-------SP 396 (462)
Q Consensus 327 ~~V~~~g~~~~~~~l~~~aD~--vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~-~G~g~~~~-------~~ 396 (462)
.++.+.+|.++. ++++.+++ ||+++|.++++||+++|+|+|..|...+| ..|++.+++ .|+|+.+. +.
T Consensus 334 ~g~~v~~W~PQ~-~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ-~~na~~~~~~~g~g~~l~~~~~~~~~~ 411 (451)
T PLN03004 334 KGMVVKSWAPQV-PVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQ-RFNRVMIVDEIKIAISMNESETGFVSS 411 (451)
T ss_pred CcEEEEeeCCHH-HHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccc-hhhHHHHHHHhCceEEecCCcCCccCH
Confidence 678889999765 79999998 99999999999999999999999986665 559999975 59997763 57
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 012492 397 KETARIVTEWFSTKTDELK 415 (462)
Q Consensus 397 ~~la~~i~~ll~~d~~~~~ 415 (462)
+++++++.+++ .+++.|+
T Consensus 412 e~l~~av~~vm-~~~~~r~ 429 (451)
T PLN03004 412 TEVEKRVQEII-GECPVRE 429 (451)
T ss_pred HHHHHHHHHHh-cCHHHHH
Confidence 89999999999 5765443
No 135
>PLN02562 UDP-glycosyltransferase
Probab=98.91 E-value=3.4e-08 Score=100.76 Aligned_cols=152 Identities=16% Similarity=0.056 Sum_probs=103.1
Q ss_pred HHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH--HHHHHHhhccCCCCeEEeccchh
Q 012492 260 LELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFETQ 337 (462)
Q Consensus 260 ~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~~~ 337 (462)
+.+.-.+...+|+++.|+....--.+.+.+++..+... +..++|+...+. .+.+...+ ...+|+.+.+|.++
T Consensus 265 ~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~-----g~~fiW~~~~~~~~~l~~~~~~-~~~~~~~v~~w~PQ 338 (448)
T PLN02562 265 GWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEAS-----GRPFIWVLNPVWREGLPPGYVE-RVSKQGKVVSWAPQ 338 (448)
T ss_pred HHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHC-----CCCEEEEEcCCchhhCCHHHHH-HhccCEEEEecCCH
Confidence 44443333457888888864222234455555555431 236777765421 12221111 12467888899975
Q ss_pred HHHHHHhcc--hheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHH-CCceeeeC--CHHHHHHHHHHHhcCCHH
Q 012492 338 MEKWMGACD--CIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD-NGAGVFTR--SPKETARIVTEWFSTKTD 412 (462)
Q Consensus 338 ~~~l~~~aD--~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~-~G~g~~~~--~~~~la~~i~~ll~~d~~ 412 (462)
.++++.++ +||+++|.++++||+.+|+|+|+.|...+| ..|++.+++ .|+|+.+. +.+++++++.++| .+++
T Consensus 339 -~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ-~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l-~~~~ 415 (448)
T PLN02562 339 -LEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQ-FVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVM-EDSG 415 (448)
T ss_pred -HHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccch-HHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHh-CCHH
Confidence 47888766 699999999999999999999999987665 459999886 48887764 5789999999999 6877
Q ss_pred HHHHHHHH
Q 012492 413 ELKRMSEN 420 (462)
Q Consensus 413 ~~~~m~~~ 420 (462)
.+++..+.
T Consensus 416 ~r~~a~~l 423 (448)
T PLN02562 416 MGERLMKL 423 (448)
T ss_pred HHHHHHHH
Confidence 76654433
No 136
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=98.89 E-value=2e-07 Score=94.90 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=96.7
Q ss_pred HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH--------H----H--HHHHhh
Q 012492 257 NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR--------T----L--ASTLQS 322 (462)
Q Consensus 257 ~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~--------~----l--~~~~~~ 322 (462)
+..+.+.-.+.+.+|+++.|+...-. .+.+.+++..|... +..++|+..+.. . + .+...+
T Consensus 250 ~~~~wLd~~~~~sVvyvsfGS~~~l~-~~q~~ela~gL~~s-----~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e 323 (455)
T PLN02152 250 SYTLWLDSKTESSVIYVSFGTMVELS-KKQIEELARALIEG-----KRPFLWVITDKLNREAKIEGEEETEIEKIAGFRH 323 (455)
T ss_pred HHHHHhhCCCCCceEEEEecccccCC-HHHHHHHHHHHHHc-----CCCeEEEEecCcccccccccccccccccchhHHH
Confidence 45566655555678999988876322 22344454444431 236788775420 0 0 011111
Q ss_pred ccCCCCeEEeccchhHHHHHHhcc--hheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHH---CCceeee----
Q 012492 323 EEWKIPVKVRGFETQMEKWMGACD--CIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD---NGAGVFT---- 393 (462)
Q Consensus 323 ~~~~~~V~~~g~~~~~~~l~~~aD--~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~---~G~g~~~---- 393 (462)
....+..+.+|.++. ++++.++ +||+++|.++++||+.+|+|+|+.|...+| ..|+..+++ .|.++..
T Consensus 324 -~~~~~g~v~~W~PQ~-~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ-~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 324 -ELEEVGMIVSWCSQI-EVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQ-PANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred -hccCCeEEEeeCCHH-HHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccc-hHHHHHHHHHhCceEEeecCcCC
Confidence 134577788999875 6888887 599999999999999999999999986665 559999987 3444432
Q ss_pred -CCHHHHHHHHHHHhcCCH
Q 012492 394 -RSPKETARIVTEWFSTKT 411 (462)
Q Consensus 394 -~~~~~la~~i~~ll~~d~ 411 (462)
-+.+++.+++.++| +++
T Consensus 401 ~~~~e~l~~av~~vm-~~~ 418 (455)
T PLN02152 401 LVERGEIRRCLEAVM-EEK 418 (455)
T ss_pred cCcHHHHHHHHHHHH-hhh
Confidence 15788999999999 454
No 137
>PLN02207 UDP-glycosyltransferase
Probab=98.88 E-value=1.3e-07 Score=96.45 Aligned_cols=195 Identities=15% Similarity=0.051 Sum_probs=118.6
Q ss_pred CcEEEEcCHHHHHHH-HHcC--CC-CCcEEEcCCCCChhhhccc----CChHHHHHHcCCCCCCcEEEEEeCCCCCccHH
Q 012492 213 VNRCYCPSKEVAKRA-SYFG--LE-VSQIRVFGLPIRPSFVRAV----ISKDNLRLELQMDPILPAVLLMGGGEGMGPVK 284 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l-~~~g--i~-~~~i~v~g~pv~~~~~~~~----~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~ 284 (462)
++.+++.|....+.- .+.- -+ ..++..+|.-....-...+ .+.++..+.+.-.+...+|+++.|+...-. .
T Consensus 212 ~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~-~ 290 (468)
T PLN02207 212 ANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLR-G 290 (468)
T ss_pred CCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCC-H
Confidence 456777776655542 1110 01 1357777743321100000 112345566655455678999998876432 3
Q ss_pred HHHHHHHHhhhcccCCCCCceEEEEccCCH-----HHHHHHhhccCCCCeEEeccchhHHHHHHhcch--heecCChhhH
Q 012492 285 ETAMALGESLLDKETGRPIGQLIIICGRNR-----TLASTLQSEEWKIPVKVRGFETQMEKWMGACDC--IITKAGPGTI 357 (462)
Q Consensus 285 ~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-----~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~--vV~~sg~~t~ 357 (462)
+.+.+++..|.. .+..++|++.... .+.+..++ ....+..+.+|.++. ++++...+ ||+++|.+++
T Consensus 291 ~q~~ela~~l~~-----~~~~flW~~r~~~~~~~~~lp~~f~e-r~~~~g~i~~W~PQ~-~IL~H~~vg~FvTH~GwnS~ 363 (468)
T PLN02207 291 PLVKEIAHGLEL-----CQYRFLWSLRTEEVTNDDLLPEGFLD-RVSGRGMICGWSPQV-EILAHKAVGGFVSHCGWNSI 363 (468)
T ss_pred HHHHHHHHHHHH-----CCCcEEEEEeCCCccccccCCHHHHh-hcCCCeEEEEeCCHH-HHhcccccceeeecCccccH
Confidence 334455555543 2346888876421 01111111 123567778999764 68877555 9999999999
Q ss_pred HHHHHhCCCEEEecCCCCccccchHHHHH-CCceeee-----------CCHHHHHHHHHHHhcC-CHHHHHH
Q 012492 358 AEALIRGLPIILNDYIPGQEKGNVPYVVD-NGAGVFT-----------RSPKETARIVTEWFST-KTDELKR 416 (462)
Q Consensus 358 ~EAla~G~PvI~~~~~~~~~~~n~~~l~~-~G~g~~~-----------~~~~~la~~i~~ll~~-d~~~~~~ 416 (462)
+||+++|+|+|..|...+| ..|+..+++ .|+|+-+ -+.+++.++|.++|.+ +++.|++
T Consensus 364 ~Eai~~GVP~l~~P~~~DQ-~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~ 434 (468)
T PLN02207 364 VESLWFGVPIVTWPMYAEQ-QLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKR 434 (468)
T ss_pred HHHHHcCCCEEecCccccc-hhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999986665 559998877 7888733 1567999999999931 3444443
No 138
>PLN02555 limonoid glucosyltransferase
Probab=98.84 E-value=2.3e-07 Score=95.05 Aligned_cols=177 Identities=18% Similarity=0.124 Sum_probs=112.1
Q ss_pred HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCC-----H---HHHHHHhhccCCCC
Q 012492 257 NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRN-----R---TLASTLQSEEWKIP 328 (462)
Q Consensus 257 ~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~-----~---~l~~~~~~~~~~~~ 328 (462)
+..+.+.-.+...+|+++.|+...-.. +.+.+++..|.. .+..++|++... . .+.+...+ ....|
T Consensus 266 ~~~~wLd~~~~~sVvyvsfGS~~~~~~-~q~~ela~~l~~-----~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~~~~ 338 (480)
T PLN02555 266 DCIEWLDSKPPSSVVYISFGTVVYLKQ-EQIDEIAYGVLN-----SGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KAGDK 338 (480)
T ss_pred hHHHHHhCCCCCceeEEEeccccCCCH-HHHHHHHHHHHh-----cCCeEEEEEecCcccccchhhcCChhhhh-hcCCc
Confidence 344555444444578888888654322 233344444432 234778876521 0 11111111 13457
Q ss_pred eEEeccchhHHHHH--HhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHC-CceeeeC---------CH
Q 012492 329 VKVRGFETQMEKWM--GACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN-GAGVFTR---------SP 396 (462)
Q Consensus 329 V~~~g~~~~~~~l~--~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~-G~g~~~~---------~~ 396 (462)
+.+.+|.++ .+++ .++.+||+++|.++++||+.+|+|+|+.|...+| ..|+..+++. |.|+.+. +.
T Consensus 339 g~v~~W~PQ-~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ-~~Na~~~~~~~gvGv~l~~~~~~~~~v~~ 416 (480)
T PLN02555 339 GKIVQWCPQ-EKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQ-VTDAVYLVDVFKTGVRLCRGEAENKLITR 416 (480)
T ss_pred eEEEecCCH-HHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCcccc-HHHHHHHHHHhCceEEccCCccccCcCcH
Confidence 888899976 4678 5688899999999999999999999999987665 5599999887 9987762 36
Q ss_pred HHHHHHHHHHhcCCHH---HH---HHHHHHHHhhcCC-c-HHHHHHHHHHHHHhc
Q 012492 397 KETARIVTEWFSTKTD---EL---KRMSENALKLAQP-E-AVVDIVKDIHDLAAQ 443 (462)
Q Consensus 397 ~~la~~i~~ll~~d~~---~~---~~m~~~a~~~~~~-~-~~~~ia~~i~~l~~~ 443 (462)
+++.+++.+++ .+++ .| ++|++.+++-... . +..++.+.+.++.+.
T Consensus 417 ~~v~~~v~~vm-~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 417 EEVAECLLEAT-VGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 78999999999 4432 22 2333334333332 2 445666666666544
No 139
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.80 E-value=1.5e-06 Score=78.95 Aligned_cols=197 Identities=18% Similarity=0.191 Sum_probs=107.8
Q ss_pred HhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHHHHHHHcCCCCCcEE-E
Q 012492 161 MEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVAKRASYFGLEVSQIR-V 239 (462)
Q Consensus 161 ~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~-v 239 (462)
.+..||++|+.+.........+.++. .++.+|.+ .| |+.-++..|.++++-+.-.+..... ..+|. +
T Consensus 67 p~~~Pdl~I~aGrrta~l~~~lkk~~---~~~~vVqI-~~-----Prlp~~~fDlvivp~HD~~~~~s~~---~~Nilpi 134 (329)
T COG3660 67 PEQRPDLIITAGRRTAPLAFYLKKKF---GGIKVVQI-QD-----PRLPYNHFDLVIVPYHDWREELSDQ---GPNILPI 134 (329)
T ss_pred ccCCCceEEecccchhHHHHHHHHhc---CCceEEEe-eC-----CCCCcccceEEeccchhhhhhhhcc---CCceeec
Confidence 46679999999877655433343433 25555543 33 3333456799998887766553222 23443 3
Q ss_pred cC--CCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccH-HHHHHHHHHhhhcccCCCCCceEEEEccCCH--
Q 012492 240 FG--LPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPV-KETAMALGESLLDKETGRPIGQLIIICGRNR-- 314 (462)
Q Consensus 240 ~g--~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-- 314 (462)
.| ++|.+.+..+ .++..+..+.++ ...+-+++||..+.-.. .+-...++..+.+.. .+..+.+++...+..
T Consensus 135 ~Gs~h~Vt~~~lAa--~~e~~~~~~p~~-rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l-~~~g~~~lisfSRRTp~ 210 (329)
T COG3660 135 NGSPHNVTSQRLAA--LREAFKHLLPLP-RQRVAVLVGGNNKAFVFQEDKAHQFASLLVKIL-ENQGGSFLISFSRRTPD 210 (329)
T ss_pred cCCCCcccHHHhhh--hHHHHHhhCCCC-CceEEEEecCCCCCCccCHHHHHHHHHHHHHHH-HhCCceEEEEeecCCcH
Confidence 34 4565555543 455554443332 33344567777665433 333333333332211 123466766555432
Q ss_pred HHHHHHhh-ccCCCCeEEecc---chhHHHHHHhcchheecCC-hhhHHHHHHhCCCEEEecCC
Q 012492 315 TLASTLQS-EEWKIPVKVRGF---ETQMEKWMGACDCIITKAG-PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 315 ~l~~~~~~-~~~~~~V~~~g~---~~~~~~l~~~aD~vV~~sg-~~t~~EAla~G~PvI~~~~~ 373 (462)
...+.++. +.-..-+.+-+- -+...++|++||.+|+... -+.+.||++.|+||-+.-.+
T Consensus 211 ~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~ 274 (329)
T COG3660 211 TVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEAASTGKPVFILEPP 274 (329)
T ss_pred HHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHHhccCCCeEEEecC
Confidence 34555554 221122222221 1356789999999887665 56689999999999887543
No 140
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.75 E-value=1.7e-07 Score=94.32 Aligned_cols=179 Identities=12% Similarity=0.046 Sum_probs=108.4
Q ss_pred HHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCC-CCeEEec
Q 012492 258 LRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWK-IPVKVRG 333 (462)
Q Consensus 258 ~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~-~~V~~~g 333 (462)
.|+.||||++.. ++... ....|-..+.+...++.|+. .|+.++++..+... .+++.+++.|+. +++.|.+
T Consensus 275 ~R~~~gLp~d~v-vF~~f-n~~~KI~p~~l~~W~~IL~~----vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~ 348 (468)
T PF13844_consen 275 TRAQYGLPEDAV-VFGSF-NNLFKISPETLDLWARILKA----VPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSP 348 (468)
T ss_dssp ETGGGT--SSSE-EEEE--S-GGG--HHHHHHHHHHHHH----STTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE
T ss_pred CHHHcCCCCCce-EEEec-CccccCCHHHHHHHHHHHHh----CCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcC
Confidence 377899987753 22222 22334444555555555543 47776655444332 256666667754 7799988
Q ss_pred cc--hhHHHHHHhcchheec---CChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCce-eeeCCHHHHHHHHHHHh
Q 012492 334 FE--TQMEKWMGACDCIITK---AGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAG-VFTRSPKETARIVTEWF 407 (462)
Q Consensus 334 ~~--~~~~~l~~~aD~vV~~---sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g-~~~~~~~~la~~i~~ll 407 (462)
.. ++.-..++.+|+++=+ +|+.|.+||+.+|+|+|..+.........+..|...|+. ++..+.++..+...+|.
T Consensus 349 ~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La 428 (468)
T PF13844_consen 349 VAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLA 428 (468)
T ss_dssp ---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHh
Confidence 75 3444567889998832 468899999999999999986544445566778888874 56678999999999999
Q ss_pred cCCHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHHhc
Q 012492 408 STKTDELKRMSENALKLA---QPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 408 ~~d~~~~~~m~~~a~~~~---~~~~~~~ia~~i~~l~~~ 443 (462)
+|++.+++++++.++.. .-+.....++.+++.+++
T Consensus 429 -~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 429 -TDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp -H-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 79999999998876543 236778888888887653
No 141
>PLN03015 UDP-glucosyl transferase
Probab=98.73 E-value=9.5e-07 Score=89.96 Aligned_cols=186 Identities=15% Similarity=0.143 Sum_probs=113.5
Q ss_pred CCcEEEEcCHHHHHH-----HHHc-CCC---CCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCcc
Q 012492 212 RVNRCYCPSKEVAKR-----ASYF-GLE---VSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGP 282 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~-----l~~~-gi~---~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~ 282 (462)
.++.+++.|.+..+. +.+. +.. ..++..+|.-+..... . .+.++..+.+.-.+...+|+++.|+...-.
T Consensus 204 ~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~~~-~-~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~ 281 (470)
T PLN03015 204 MSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGPIVRTNVH-V-EKRNSIFEWLDKQGERSVVYVCLGSGGTLT 281 (470)
T ss_pred cCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecCCCCCccc-c-cchHHHHHHHHhCCCCCEEEEECCcCCcCC
Confidence 456677777554443 2111 110 1347788854422111 1 122345566655555678999999986433
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEccCC-----------HHHH----HHHhhccCCCCeEEeccchhHHHHHHhcc-
Q 012492 283 VKETAMALGESLLDKETGRPIGQLIIICGRN-----------RTLA----STLQSEEWKIPVKVRGFETQMEKWMGACD- 346 (462)
Q Consensus 283 ~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~-----------~~l~----~~~~~~~~~~~V~~~g~~~~~~~l~~~aD- 346 (462)
. +.+.+++..|.. .+..|+|+.... .... +...+.-....+.+.+|.++. ++++...
T Consensus 282 ~-~q~~ela~gl~~-----s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~-~vL~h~~v 354 (470)
T PLN03015 282 F-EQTVELAWGLEL-----SGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQV-EILSHRSI 354 (470)
T ss_pred H-HHHHHHHHHHHh-----CCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHH-HHhccCcc
Confidence 3 334455555543 123678887421 0011 111110011236677999775 6777755
Q ss_pred -hheecCChhhHHHHHHhCCCEEEecCCCCccccchHHH-HHCCceeeeC--------CHHHHHHHHHHHh
Q 012492 347 -CIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYV-VDNGAGVFTR--------SPKETARIVTEWF 407 (462)
Q Consensus 347 -~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l-~~~G~g~~~~--------~~~~la~~i~~ll 407 (462)
+||+++|.++++||+++|+|+|..|...+| ..|+..+ ...|+|+.+. ..+++.++|+++|
T Consensus 355 g~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ-~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm 424 (470)
T PLN03015 355 GGFLSHCGWSSVLESLTKGVPIVAWPLYAEQ-WMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIV 424 (470)
T ss_pred CeEEecCCchhHHHHHHcCCCEEecccccch-HHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHH
Confidence 499999999999999999999999986665 4599988 4568887662 4678899999999
No 142
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=4.2e-06 Score=85.17 Aligned_cols=272 Identities=16% Similarity=0.084 Sum_probs=156.1
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC----C--------Ccccc------------------cCC
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT----C--------HPTWF------------------HPR 212 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~----~--------~~~~~------------------~~~ 212 (462)
++||||+++.-....++............+|.|..+|...- . .+.+. -..
T Consensus 129 ~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ 208 (487)
T COG0297 129 WLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYY 208 (487)
T ss_pred CCCCEEEeecHHHHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhhee
Confidence 57999999875554444333321101248899888875431 0 01010 023
Q ss_pred CcEEEEcCHHHHHHHHH--c--CCC------CCcEEEcCCCCChhhhcccC------------------ChHHHHHHcCC
Q 012492 213 VNRCYCPSKEVAKRASY--F--GLE------VSQIRVFGLPIRPSFVRAVI------------------SKDNLRLELQM 264 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l~~--~--gi~------~~~i~v~g~pv~~~~~~~~~------------------~~~~~r~~l~l 264 (462)
+|.+.++|+...+.+.. . |+. ..++.-+-|+++..+..+.. .+..+.+++++
T Consensus 209 ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL 288 (487)
T COG0297 209 ADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGL 288 (487)
T ss_pred ccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCC
Confidence 67888888887777651 1 111 13445455666555443311 22356677888
Q ss_pred CC--CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH-HHHHHHhhc--cCCCCeEE-eccchhH
Q 012492 265 DP--ILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR-TLASTLQSE--EWKIPVKV-RGFETQM 338 (462)
Q Consensus 265 ~~--~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-~l~~~~~~~--~~~~~V~~-~g~~~~~ 338 (462)
+. +.|++.++++...+|++.-++. ++..+.+. .+++++ .|.++ .++..+..+ ....++.+ .++.+.+
T Consensus 289 ~~~~~~pl~~~vsRl~~QKG~dl~~~-~i~~~l~~-----~~~~vi-lG~gd~~le~~~~~la~~~~~~~~~~i~~~~~l 361 (487)
T COG0297 289 DVDLPGPLFGFVSRLTAQKGLDLLLE-AIDELLEQ-----GWQLVL-LGTGDPELEEALRALASRHPGRVLVVIGYDEPL 361 (487)
T ss_pred CCCCCCcEEEEeeccccccchhHHHH-HHHHHHHh-----CceEEE-EecCcHHHHHHHHHHHHhcCceEEEEeeecHHH
Confidence 73 4566666665555555444444 44444431 366554 45543 344444433 12234544 5666555
Q ss_pred H-HHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCcccc---chHHHHHCCceeee--CCHHHHHHHHHHHhc
Q 012492 339 E-KWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKG---NVPYVVDNGAGVFT--RSPKETARIVTEWFS 408 (462)
Q Consensus 339 ~-~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~---n~~~l~~~G~g~~~--~~~~~la~~i~~ll~ 408 (462)
. .+++.||+++.||. |.|-++||..|++.|+.+.++-..+. |.......|.|+.. .++++++.++.+.+.
T Consensus 362 a~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~ 441 (487)
T COG0297 362 AHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALV 441 (487)
T ss_pred HHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHH
Confidence 4 78899999999985 89999999999999998876421110 10101224566654 468888888876542
Q ss_pred --CCHHH-HHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 409 --TKTDE-LKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 409 --~d~~~-~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
.+++. .+.+..++.. ..++|+.-|+...++.+.
T Consensus 442 ~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y~~lY~~ 477 (487)
T COG0297 442 LYRAPPLLWRKVQPNAMG--ADFSWDLSAKEYVELYKP 477 (487)
T ss_pred HhhCCHHHHHHHHHhhcc--cccCchhHHHHHHHHHHH
Confidence 33333 6666666544 577888888877776654
No 143
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.71 E-value=4.7e-07 Score=90.60 Aligned_cols=220 Identities=15% Similarity=0.126 Sum_probs=121.2
Q ss_pred cCCCcEEEEcCHHHHHHHHH-cCCCCCcEEEcCCCCChhhhcccCC-hHHHHHHcCCCCCCcEEEEEeCCCCCccH----
Q 012492 210 HPRVNRCYCPSKEVAKRASY-FGLEVSQIRVFGLPIRPSFVRAVIS-KDNLRLELQMDPILPAVLLMGGGEGMGPV---- 283 (462)
Q Consensus 210 ~~~~d~~i~~s~~~~~~l~~-~gi~~~~i~v~g~pv~~~~~~~~~~-~~~~r~~l~l~~~~~~iLv~gG~~~~~~~---- 283 (462)
....|.+++.|+...+.+.+ .+++.+++.++|.|-...+...... ++.+++.++++.++++||.+..-.+....
T Consensus 132 ~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~ 211 (369)
T PF04464_consen 132 YRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFK 211 (369)
T ss_dssp HTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS
T ss_pred ccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeecccccccccccc
Confidence 45678999999999888876 4888889999999977666654222 45788889999888888887532221111
Q ss_pred --H--HHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhh-ccCCCCeEEeccchhHHHHHHhcchheecCChhhHH
Q 012492 284 --K--ETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQS-EEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIA 358 (462)
Q Consensus 284 --~--~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~-~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~ 358 (462)
. -....+. .+. .+++.++ .-..+........ .....+|.++...+++.++|..||++|+-- +.++.
T Consensus 212 ~~~~~~~~~~l~-~~~-----~~~~~li--~k~Hp~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~~aDiLITDy-SSi~f 282 (369)
T PF04464_consen 212 FFFSDLDFEKLN-FLL-----KNNYVLI--IKPHPNMKKKFKDFKEDNSNIIFVSDNEDIYDLLAAADILITDY-SSIIF 282 (369)
T ss_dssp ----TT-HHHHH-HHH-----TTTEEEE--E--SHHHHTT----TT-TTTEEE-TT-S-HHHHHHT-SEEEESS--THHH
T ss_pred ccccccCHHHHH-HHh-----CCCcEEE--EEeCchhhhchhhhhccCCcEEECCCCCCHHHHHHhcCEEEEec-hhHHH
Confidence 0 1122232 222 2355433 3333322222222 234567888776678999999999999964 45889
Q ss_pred HHHHhCCCEEEecCCCC---ccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHH----HHHHHHHHHHhhcCCcHHH
Q 012492 359 EALIRGLPIILNDYIPG---QEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTD----ELKRMSENALKLAQPEAVV 431 (462)
Q Consensus 359 EAla~G~PvI~~~~~~~---~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~----~~~~m~~~a~~~~~~~~~~ 431 (462)
|++.+++|+|.....-. ++.+-...+.+...|..+.+.+++.++|..++. ++. .+++..++--.+.+..+++
T Consensus 283 D~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~Dg~s~e 361 (369)
T PF04464_consen 283 DFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIEAIENIIE-NPDEYKEKREKFRDKFFKYNDGNSSE 361 (369)
T ss_dssp HHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHHHTTHHH-HHHHTHHHHHHHHHHHSTT--S-HHH
T ss_pred HHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHHHHHhhhh-CCHHHHHHHHHHHHHhCCCCCchHHH
Confidence 99999999998765321 111111123344567788899999999998873 332 2334444444445678999
Q ss_pred HHHHHHHH
Q 012492 432 DIVKDIHD 439 (462)
Q Consensus 432 ~ia~~i~~ 439 (462)
+|++.|.+
T Consensus 362 ri~~~I~k 369 (369)
T PF04464_consen 362 RIVNYIFK 369 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99998874
No 144
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.70 E-value=7.1e-08 Score=85.01 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=81.0
Q ss_pred CchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhHHHHHHHHHHH
Q 012492 73 GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYY 152 (462)
Q Consensus 73 G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (462)
.||..+.+..|+++|.++|+ ++.+...... ........ ... ............ .....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~---~v~v~~~~~~-~~~~~~~~-~~~----------~~~~~~~~~~~~-------~~~~~ 68 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGH---EVTVVSPGVK-DPIEEELV-KIF----------VKIPYPIRKRFL-------RSFFF 68 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT----EEEEEESS-T-TS-SSTEE-EE-------------TT-SSTSS---------HHHHH
T ss_pred CChHHHHHHHHHHHHHHCCC---EEEEEEcCCC-ccchhhcc-cee----------eeeecccccccc-------hhHHH
Confidence 36999999999999999985 4454422110 00000000 000 000000000011 12344
Q ss_pred HHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-------CC----------cccccCCCcE
Q 012492 153 AKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-------CH----------PTWFHPRVNR 215 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-------~~----------~~~~~~~~d~ 215 (462)
...+.+.+++.+||+|+++............+ ++|++...|+... .. ..++.+.+|.
T Consensus 69 ~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~------~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (177)
T PF13439_consen 69 MRRLRRLIKKEKPDIVHIHGPPAFWIALLACR------KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADR 142 (177)
T ss_dssp HHHHHHHHHHHT-SEEECCTTHCCCHHHHHHH------CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSE
T ss_pred HHHHHHHHHHcCCCeEEecccchhHHHHHhcc------CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCE
Confidence 56777889999999998877654443222222 6898888776430 00 1123467899
Q ss_pred EEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhh
Q 012492 216 CYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFV 249 (462)
Q Consensus 216 ~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~ 249 (462)
++|+|+..++.+.+.|++++++.+++|+++.+.+
T Consensus 143 ii~vS~~~~~~l~~~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 143 IIAVSESTKDELIKFGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp EEESSHHHHHHHHHHT--SS-EEE----B-CCCH
T ss_pred EEEECHHHHHHHHHhCCcccCCEEEECCccHHHc
Confidence 9999999999999989999999999999987654
No 145
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.67 E-value=1.4e-06 Score=88.27 Aligned_cols=188 Identities=13% Similarity=0.082 Sum_probs=114.4
Q ss_pred CCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHH
Q 012492 211 PRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMAL 290 (462)
Q Consensus 211 ~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l 290 (462)
...|.++++++...+.+..+.-+..++.+++-+.--.+ .++. .....+++++ . .+.++.+
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~~~~~~~ip~g~i~~~-----~~~~--------r~~~~~l~~t----~---s~~I~~i 297 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDNEYQEQISQLGYLYPF-----KKDN--------KYRKQALILT----N---SDQIEHL 297 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCcccCceEEEEEEEEee-----cccc--------CCcccEEEEC----C---HHHHHHH
Confidence 45688999998877766654222334443332222111 0100 1112344444 1 3334433
Q ss_pred HHhhhcccCCCCCceEEEEccCC--HHHHHHHhhccCCCCeEEeccch-hHHHHHHhcchheecC----ChhhHHHHHHh
Q 012492 291 GESLLDKETGRPIGQLIIICGRN--RTLASTLQSEEWKIPVKVRGFET-QMEKWMGACDCIITKA----GPGTIAEALIR 363 (462)
Q Consensus 291 ~~~l~~~~~~~~~~~~lvv~G~~--~~l~~~~~~~~~~~~V~~~g~~~-~~~~l~~~aD~vV~~s----g~~t~~EAla~ 363 (462)
...+.+ .|++++-+..|.. .++.+. +++ +.-+.+.|+.. ++.++|..||+++..+ .++++.||+..
T Consensus 298 ~~Lv~~----lPd~~f~Iga~te~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~ 370 (438)
T TIGR02919 298 EEIVQA----LPDYHFHIAALTEMSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEY 370 (438)
T ss_pred HHHHHh----CCCcEEEEEecCcccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHc
Confidence 322221 4788876655555 334333 443 34455677776 9999999999988644 28999999999
Q ss_pred CCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHH
Q 012492 364 GLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVV 431 (462)
Q Consensus 364 G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~ 431 (462)
|+|+++.+...+... ++..|..+...++++++++|.++| .+++..++.-..-++.+..-+.+
T Consensus 371 G~pI~afd~t~~~~~-----~i~~g~l~~~~~~~~m~~~i~~lL-~d~~~~~~~~~~q~~~a~~~~~~ 432 (438)
T TIGR02919 371 NLLILGFEETAHNRD-----FIASENIFEHNEVDQLISKLKDLL-NDPNQFRELLEQQREHANDISKE 432 (438)
T ss_pred CCcEEEEecccCCcc-----cccCCceecCCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhccCCHH
Confidence 999999998644322 333365566678999999999999 78877666555555655544444
No 146
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=98.65 E-value=5.3e-06 Score=80.28 Aligned_cols=192 Identities=18% Similarity=0.187 Sum_probs=107.5
Q ss_pred HHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHHHHHHHcCC-CCCcE
Q 012492 159 GLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVAKRASYFGL-EVSQI 237 (462)
Q Consensus 159 ~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~~~l~~~gi-~~~~i 237 (462)
.+..-.||+||+.+.......+++.+..+ .+.++|.+. .|.......|.++++.+. +. +..++
T Consensus 52 ~~~~~~pdLiIsaGr~t~~~~~~l~r~~g--g~~~~V~i~------~P~~~~~~FDlvi~p~HD--------~~~~~~Nv 115 (311)
T PF06258_consen 52 ALEPPWPDLIISAGRRTAPAALALRRASG--GRTKTVQIM------DPRLPPRPFDLVIVPEHD--------RLPRGPNV 115 (311)
T ss_pred cccCCCCcEEEECCCchHHHHHHHHHHcC--CCceEEEEc------CCCCCccccCEEEECccc--------CcCCCCce
Confidence 35566799999999876655444444432 245666543 333445667999988765 33 23555
Q ss_pred EEc-C--CCCChhhhcccCChHHHHHHcCCCCCCcEE-EEEeCCCCCcc-H----HHHHHHHHHhhhcccCCCCCceEEE
Q 012492 238 RVF-G--LPIRPSFVRAVISKDNLRLELQMDPILPAV-LLMGGGEGMGP-V----KETAMALGESLLDKETGRPIGQLII 308 (462)
Q Consensus 238 ~v~-g--~pv~~~~~~~~~~~~~~r~~l~l~~~~~~i-Lv~gG~~~~~~-~----~~~l~~l~~~l~~~~~~~~~~~~lv 308 (462)
..+ | |++.++-... .+.+...++.-.+ ++.+ +++||..+... . .+++..+.+.+.+ . +..+++
T Consensus 116 l~t~ga~~~i~~~~l~~--a~~~~~~~~~~l~-~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~----~-~~~~~v 187 (311)
T PF06258_consen 116 LPTLGAPNRITPERLAE--AAAAWAPRLAALP-RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA----Y-GGSLLV 187 (311)
T ss_pred EecccCCCcCCHHHHHH--HHHhhhhhhccCC-CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh----C-CCeEEE
Confidence 443 2 4444443221 2233333344222 3444 45666544322 1 2344444333322 2 245666
Q ss_pred EccCC--HHHHHHHhhc-cCCCCeEEeccc--hhHHHHHHhcchheecCC-hhhHHHHHHhCCCEEEecCCC
Q 012492 309 ICGRN--RTLASTLQSE-EWKIPVKVRGFE--TQMEKWMGACDCIITKAG-PGTIAEALIRGLPIILNDYIP 374 (462)
Q Consensus 309 v~G~~--~~l~~~~~~~-~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg-~~t~~EAla~G~PvI~~~~~~ 374 (462)
...+. .+..+.++++ +....+.+..-. +.+..+|+.||.++.... -+++.||++.|+||.+.+...
T Consensus 188 ttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 188 TTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred EcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 55543 2344555443 234556444332 468899999999877654 567899999999999998764
No 147
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.2e-05 Score=77.16 Aligned_cols=268 Identities=11% Similarity=0.032 Sum_probs=150.1
Q ss_pred HHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCC--CCCcccccCCCcEEEEcCHHHHHHHHHc--C
Q 012492 156 VEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLN--TCHPTWFHPRVNRCYCPSKEVAKRASYF--G 231 (462)
Q Consensus 156 l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~--~~~~~~~~~~~d~~i~~s~~~~~~l~~~--g 231 (462)
+...++.-..|+.|-..+.+......+... ...|+...-..+. ...+..=+-..|.++++ ++...++.+. .
T Consensus 327 ~a~~I~~d~IdILvDl~g~T~d~r~~v~A~----RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vP-p~ae~yysEkl~R 401 (620)
T COG3914 327 IANAIRTDGIDILVDLDGHTVDTRCQVFAH----RPAPIQVSWLGYPATTGSPNMDYFISDPYTVP-PTAEEYYSEKLWR 401 (620)
T ss_pred HHHHHHhcCCeEEEeccCceeccchhhhhc----CCCceEEeecccccccCCCcceEEeeCceecC-chHHHHHHHHHHh
Confidence 345688999999987666544332222221 2456542211111 01111112234555555 5555555442 2
Q ss_pred CCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEcc
Q 012492 232 LEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICG 311 (462)
Q Consensus 232 i~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G 311 (462)
+| -+..|++....-. ++ --|..+||+++.. |++. +....|...+.+....+.|+. -|+-.+++..|
T Consensus 402 Lp-----~cy~p~d~~~~v~-p~--~sR~~lglp~~av-Vf~c-~~n~~K~~pev~~~wmqIL~~----vP~Svl~L~~~ 467 (620)
T COG3914 402 LP-----QCYQPVDGFEPVT-PP--PSRAQLGLPEDAV-VFCC-FNNYFKITPEVFALWMQILSA----VPNSVLLLKAG 467 (620)
T ss_pred cc-----cccCCCCCcccCC-CC--cchhhcCCCCCeE-EEEe-cCCcccCCHHHHHHHHHHHHh----CCCcEEEEecC
Confidence 33 2333443321111 11 1245689987653 3333 333455566666655555554 46755544444
Q ss_pred C-CHHH----HHHHhhccC-CCCeEEeccc--hhHHHHHHhcchhee--c-CChhhHHHHHHhCCCEEEecCCCCccccc
Q 012492 312 R-NRTL----ASTLQSEEW-KIPVKVRGFE--TQMEKWMGACDCIIT--K-AGPGTIAEALIRGLPIILNDYIPGQEKGN 380 (462)
Q Consensus 312 ~-~~~l----~~~~~~~~~-~~~V~~~g~~--~~~~~l~~~aD~vV~--~-sg~~t~~EAla~G~PvI~~~~~~~~~~~n 380 (462)
+ +++. ++..++.|. ..++.|.+.. +++.+.|..||+|+= | +|+.|.+|++-+|+|||...-..--..-.
T Consensus 468 ~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~ 547 (620)
T COG3914 468 GDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNG 547 (620)
T ss_pred CCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCCCccchHHHHHhcCceeeeccHHHHHhhh
Confidence 3 3333 444444454 4788998876 678899999999983 2 35788999999999999875321111212
Q ss_pred hHHHHHCCc-eeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHHhc
Q 012492 381 VPYVVDNGA-GVFTRSPKETARIVTEWFSTKTDELKRMSENALKLA---QPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 381 ~~~l~~~G~-g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~---~~~~~~~ia~~i~~l~~~ 443 (462)
...+...|. -.++.+.++..++-.++= .|...+++.+...++-. .-+.....++.++.++.+
T Consensus 548 ~si~~~agi~e~vA~s~~dYV~~av~~g-~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~ 613 (620)
T COG3914 548 ASIATNAGIPELVADSRADYVEKAVAFG-SDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWG 613 (620)
T ss_pred HHHHHhcCCchhhcCCHHHHHHHHHHhc-ccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHH
Confidence 334555665 345567788887777766 57767766665443322 246778888888887754
No 148
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.62 E-value=9.6e-06 Score=88.42 Aligned_cols=274 Identities=11% Similarity=0.096 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHhhCC-CEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccc-----------cCCCcE
Q 012492 148 MAAYYAKEVEAGLMEYKP-DIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWF-----------HPRVNR 215 (462)
Q Consensus 148 ~~~~~~~~l~~~l~~~kP-DvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~-----------~~~~d~ 215 (462)
.+..++.++ ++.++| |+|-++.......|.. .|.+. ++.++-.++|-..+....|. .-.+|.
T Consensus 217 vN~~FA~~i---~~~~~~gD~VWVHDYHL~LlP~~-LR~~~--p~~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDl 290 (934)
T PLN03064 217 ANQMFADVV---NEHYEEGDVVWCHDYHLMFLPKC-LKEYN--SNMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADL 290 (934)
T ss_pred HHHHHHHHH---HHhcCCCCEEEEecchhhHHHHH-HHHhC--CCCcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCe
Confidence 344555554 455566 5776666555554433 34332 45666556664432111110 124677
Q ss_pred EEEcCHHHHHHHHH-----cCCCC--------C---cEEEcCCCCChhhhccc-CC------hHHHHHHcCCCCCCcEEE
Q 012492 216 CYCPSKEVAKRASY-----FGLEV--------S---QIRVFGLPIRPSFVRAV-IS------KDNLRLELQMDPILPAVL 272 (462)
Q Consensus 216 ~i~~s~~~~~~l~~-----~gi~~--------~---~i~v~g~pv~~~~~~~~-~~------~~~~r~~l~l~~~~~~iL 272 (462)
+-..+....+.+.. .|+.. . +|.+.+.+|++..+... .. .++++++++ ++++|+
T Consensus 291 IGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIl 367 (934)
T PLN03064 291 VGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA---GRKVML 367 (934)
T ss_pred EEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEE
Confidence 77777766655532 23221 1 24455667777654421 11 135666664 445555
Q ss_pred EEeCCCCCccHHHHHHHHHHhhhcccCCCCCce--EEE--Ec----cCCHH---HHHHHhhc--------cC--CCCeEE
Q 012492 273 LMGGGEGMGPVKETAMALGESLLDKETGRPIGQ--LII--IC----GRNRT---LASTLQSE--------EW--KIPVKV 331 (462)
Q Consensus 273 v~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~--~lv--v~----G~~~~---l~~~~~~~--------~~--~~~V~~ 331 (462)
-+++....|++.+.+.++...|.+ +|+++ +++ ++ +...+ +++.+.++ +. ...|++
T Consensus 368 gVDRLD~~KGI~~kL~AfE~fL~~----~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~ 443 (934)
T PLN03064 368 GVDRLDMIKGIPQKILAFEKFLEE----NPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHH 443 (934)
T ss_pred EeeccccccCHHHHHHHHHHHHHh----CccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEE
Confidence 455555567888777776444443 56653 222 22 22222 33334321 11 122444
Q ss_pred ecc-c--hhHHHHHHhcchheecC---C-hhhHHHHHHhCC----CEEEecCCCCccccchHHHHHCCceeeeC--CHHH
Q 012492 332 RGF-E--TQMEKWMGACDCIITKA---G-PGTIAEALIRGL----PIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKE 398 (462)
Q Consensus 332 ~g~-~--~~~~~l~~~aD~vV~~s---g-~~t~~EAla~G~----PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~ 398 (462)
+.. + +++..+|+.||+++.+| | +.+..|+++|+. ++|++.+.+ .+..| ...+++++ |.++
T Consensus 444 ~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaG-----aa~~L--~~~AllVNP~D~~~ 516 (934)
T PLN03064 444 LDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAG-----AAQSL--GAGAILVNPWNITE 516 (934)
T ss_pred eccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCc-----hHHHh--CCceEEECCCCHHH
Confidence 322 2 68899999999999877 3 788999999965 444455432 33334 11355554 7999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 012492 399 TARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 399 la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~ 441 (462)
++++|.+.|..+++.++++.++.++++..+.+..-++.+.+-+
T Consensus 517 vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L 559 (934)
T PLN03064 517 VAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSEL 559 (934)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 9999999995588999999999999998887776666544433
No 149
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=98.40 E-value=9.6e-07 Score=69.51 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=65.0
Q ss_pred ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCC-ceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CcHH
Q 012492 353 GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNG-AGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQ-PEAV 430 (462)
Q Consensus 353 g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G-~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~-~~~~ 430 (462)
.+..+.|+|+||+|+|..+.. ....+...| .++.+++++++.+++..++ +||+.++++++++++.+. .+++
T Consensus 11 ~~~r~~E~~a~G~~vi~~~~~------~~~~~~~~~~~~~~~~~~~el~~~i~~ll-~~~~~~~~ia~~a~~~v~~~~t~ 83 (92)
T PF13524_consen 11 PNMRIFEAMACGTPVISDDSP------GLREIFEDGEHIITYNDPEELAEKIEYLL-ENPEERRRIAKNARERVLKRHTW 83 (92)
T ss_pred CchHHHHHHHCCCeEEECChH------HHHHHcCCCCeEEEECCHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHhCCH
Confidence 366899999999999998652 122334455 5677789999999999999 799999999999999886 7899
Q ss_pred HHHHHHHH
Q 012492 431 VDIVKDIH 438 (462)
Q Consensus 431 ~~ia~~i~ 438 (462)
++.++.|.
T Consensus 84 ~~~~~~il 91 (92)
T PF13524_consen 84 EHRAEQIL 91 (92)
T ss_pred HHHHHHHH
Confidence 99888875
No 150
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=98.38 E-value=9.1e-06 Score=84.68 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=112.9
Q ss_pred cEEEEEeCCCCC--ccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhcc--CCCCeEEeccchhHHHHH--
Q 012492 269 PAVLLMGGGEGM--GPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEE--WKIPVKVRGFETQMEKWM-- 342 (462)
Q Consensus 269 ~~iLv~gG~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~--~~~~V~~~g~~~~~~~l~-- 342 (462)
.+|+++.|+... .--.+...+++..+.. .++..++|..-..... ...+... ...+|.+.+|.++..-++
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~----~~~~~FiW~~~~~~~~-~~~~~~~~~~~~nV~~~~W~PQ~~lll~H 352 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALES----LQGVTFLWKYRPDDSI-YFPEGLPNRGRGNVVLSKWAPQNDLLLDH 352 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHh----CCCceEEEEecCCcch-hhhhcCCCCCcCceEEecCCCcHHHhcCC
Confidence 688888888763 2123334445555543 1356678877655321 1112111 135799999998765442
Q ss_pred HhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHH
Q 012492 343 GACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMS 418 (462)
Q Consensus 343 ~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~ 418 (462)
.+..+||+++|-++++|++.+|+|+|..|.-++| ..|++.+++.|.+.+.. ....+.+++.+++ .+++..+...
T Consensus 353 ~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ-~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il-~~~~y~~~~~ 430 (496)
T KOG1192|consen 353 PAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQ-PLNARLLVRHGGGGVLDKRDLVSEELLEAIKEIL-ENEEYKEAAK 430 (496)
T ss_pred CcCcEEEECCcccHHHHHHhcCCceecCCccccc-hhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHH-cChHHHHHHH
Confidence 3356899999999999999999999999886665 55999999998765543 1223788889998 6888777666
Q ss_pred HHHHhhc-CCcHHHHHHHHHHHHHhccCCCcc
Q 012492 419 ENALKLA-QPEAVVDIVKDIHDLAAQRGPLAR 449 (462)
Q Consensus 419 ~~a~~~~-~~~~~~~ia~~i~~l~~~~~~~~~ 449 (462)
+-+.... ++... ..+..+.+...+.....+
T Consensus 431 ~l~~~~~~~p~~~-~~~~~~~e~~~~~~~~~~ 461 (496)
T KOG1192|consen 431 RLSEILRDQPISP-ELAVKWVEFVARHGGAKH 461 (496)
T ss_pred HHHHHHHcCCCCH-HHHHHHHHHHHhcCCCcc
Confidence 6666554 34555 666666665555443333
No 151
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.31 E-value=5.5e-06 Score=68.87 Aligned_cols=131 Identities=16% Similarity=0.222 Sum_probs=83.2
Q ss_pred cEEEEEeCCCCCccHHHHH--HHHHHhhhcccCCCCCceEEEEccCCHH----HHHHHhhccCCCCeEEeccchhHHHHH
Q 012492 269 PAVLLMGGGEGMGPVKETA--MALGESLLDKETGRPIGQLIIICGRNRT----LASTLQSEEWKIPVKVRGFETQMEKWM 342 (462)
Q Consensus 269 ~~iLv~gG~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~~lvv~G~~~~----l~~~~~~~~~~~~V~~~g~~~~~~~l~ 342 (462)
..++|+.|+.....+...+ .+..+.|.+ +--.++++-.|++.. -.+.+. ....-.|....|.+.|.+++
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k----~G~~kLiiQ~Grg~~~~~d~~~~~~-k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQK----RGFTKLIIQIGRGQPFFGDPIDLIR-KNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHH----cCccEEEEEecCCccCCCCHHHhhc-ccCCeEEEEEecCccHHHHH
Confidence 3567777776644332111 123344433 112367777888731 112221 11112344455568999999
Q ss_pred HhcchheecCChhhHHHHHHhCCCEEEecCC---CCccccchHHHHHCCceeeeCCHHHHHHHHHH
Q 012492 343 GACDCIITKAGPGTIAEALIRGLPIILNDYI---PGQEKGNVPYVVDNGAGVFTRSPKETARIVTE 405 (462)
Q Consensus 343 ~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~---~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ 405 (462)
+.||+||+++|.++++|.+..|+|.|+.... .++|..-|..+.+.|+-+.+...+ +.+.+.+
T Consensus 79 ~~AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~-L~~~L~~ 143 (170)
T KOG3349|consen 79 RSADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPST-LPAGLAK 143 (170)
T ss_pred hhccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccc-hHHHHHh
Confidence 9999999999999999999999999887764 356666788899999888776433 3333433
No 152
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.23 E-value=1.5e-06 Score=75.14 Aligned_cols=86 Identities=13% Similarity=0.195 Sum_probs=48.2
Q ss_pred HHHHHHH--HhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC-c-----------ccccCCCcEEEEc
Q 012492 154 KEVEAGL--MEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH-P-----------TWFHPRVNRCYCP 219 (462)
Q Consensus 154 ~~l~~~l--~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~-~-----------~~~~~~~d~~i~~ 219 (462)
..+.+++ ++.+||+|+++++..... ...++.. .++|+|...|+..... . .+..+.+|.++++
T Consensus 61 ~~~~~~l~~~~~~~Dvv~~~~~~~~~~-~~~~~~~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~ 136 (160)
T PF13579_consen 61 RRLRRLLAARRERPDVVHAHSPTAGLV-AALARRR---RGIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVV 136 (160)
T ss_dssp HHHHHHCHHCT---SEEEEEHHHHHHH-HHHHHHH---HT--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEES
T ss_pred HHHHHHHhhhccCCeEEEecccchhHH-HHHHHHc---cCCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEEC
Confidence 3445566 899999999988543322 3334421 3899998888753111 1 1234568999999
Q ss_pred CHHHHHHHHHcCCCCCcEEEcCCC
Q 012492 220 SKEVAKRASYFGLEVSQIRVFGLP 243 (462)
Q Consensus 220 s~~~~~~l~~~gi~~~~i~v~g~p 243 (462)
|+..++.+.+.|++++++.+++|+
T Consensus 137 S~~~~~~l~~~g~~~~ri~vipnG 160 (160)
T PF13579_consen 137 SEAMRRYLRRYGVPPDRIHVIPNG 160 (160)
T ss_dssp SHHHHHHHHHH---GGGEEE----
T ss_pred CHHHHHHHHHhCCCCCcEEEeCcC
Confidence 999999999999999999999985
No 153
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=0.00021 Score=66.52 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=72.2
Q ss_pred chhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHH----CCceee-eCCHHHHHHHHH-HHhc
Q 012492 335 ETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD----NGAGVF-TRSPKETARIVT-EWFS 408 (462)
Q Consensus 335 ~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~----~G~g~~-~~~~~~la~~i~-~ll~ 408 (462)
...+.+.+..+|+++..+|.. .-.+.-.|+|+|.+|..+.| . |.-+.+. .|+... +..+...+..+. ++|
T Consensus 302 qqsfadiLH~adaalgmAGTA-tEQavGLGkPvi~fPg~GPQ-y-~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll- 377 (412)
T COG4370 302 QQSFADILHAADAALGMAGTA-TEQAVGLGKPVIGFPGQGPQ-Y-NPGFAERQQRLLGASLTLVRPEAQAAAQAVQELL- 377 (412)
T ss_pred HHHHHHHHHHHHHHHHhccch-HHHhhccCCceeecCCCCCC-c-ChHHHHHHHHHhcceeeecCCchhhHHHHHHHHh-
Confidence 467889999999999888732 24499999999999865433 2 4333322 476554 444444455554 488
Q ss_pred CCHHHHHHHHHHHHhh-cCCcHHHHHHHHHHHH
Q 012492 409 TKTDELKRMSENALKL-AQPEAVVDIVKDIHDL 440 (462)
Q Consensus 409 ~d~~~~~~m~~~a~~~-~~~~~~~~ia~~i~~l 440 (462)
.||+..+....++++. .+..++.+||+.+.+.
T Consensus 378 ~dp~r~~air~nGqrRiGqaGaa~rIAe~l~e~ 410 (412)
T COG4370 378 GDPQRLTAIRHNGQRRIGQAGAARRIAEELGEM 410 (412)
T ss_pred cChHHHHHHHhcchhhccCcchHHHHHHHHHHh
Confidence 7999999999887654 5677888999887764
No 154
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=98.10 E-value=0.00072 Score=67.06 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=62.9
Q ss_pred HHHHcCCCCCCcEEEEEeCC-CC-Ccc-HHHHHHHHHHhhhcccCCCCCceEEEEccCCHH-HHHHHhhc-cC--CCC-e
Q 012492 258 LRLELQMDPILPAVLLMGGG-EG-MGP-VKETAMALGESLLDKETGRPIGQLIIICGRNRT-LASTLQSE-EW--KIP-V 329 (462)
Q Consensus 258 ~r~~l~l~~~~~~iLv~gG~-~~-~~~-~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~-l~~~~~~~-~~--~~~-V 329 (462)
....+++.+++++|++..|+ .+ .+. -.+-+.++++.|.+ .++++++++|+.+. ..+.+.+. .. ..+ +
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-----~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~ 244 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID-----EGYQVVLFGSAKDHEAGNEILAALNTEQQAWCR 244 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH-----CCCeEEEEeCHHhHHHHHHHHHhccccccccee
Confidence 44455655456677665554 23 232 12334456666643 24566666555442 22333221 11 111 4
Q ss_pred EEecc--chhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 330 KVRGF--ETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 330 ~~~g~--~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
.+.|- ..++..+++.||++|+.-.| .+-=|.+.|+|+|+.-.+
T Consensus 245 ~l~g~~sL~el~ali~~a~l~I~nDTG-p~HlAaA~g~P~valfGp 289 (348)
T PRK10916 245 NLAGETQLEQAVILIAACKAIVTNDSG-LMHVAAALNRPLVALYGP 289 (348)
T ss_pred eccCCCCHHHHHHHHHhCCEEEecCCh-HHHHHHHhCCCEEEEECC
Confidence 45564 37899999999999997543 345579999999987543
No 155
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=98.10 E-value=1.7e-05 Score=71.06 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=72.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
..|+|++.|. |....+..|+++|+++.++ ..+.++... ..........+...+. +. .
T Consensus 22 ~~iWiHa~Sv--GE~~a~~~Li~~l~~~~p~-~~illT~~T----~tg~~~~~~~~~~~v~---------~~----~--- 78 (186)
T PF04413_consen 22 PLIWIHAASV--GEVNAARPLIKRLRKQRPD-LRILLTTTT----PTGREMARKLLPDRVD---------VQ----Y--- 78 (186)
T ss_dssp T-EEEE-SSH--HHHHHHHHHHHHHTT---T-S-EEEEES-----CCHHHHHHGG-GGG-S---------EE----E---
T ss_pred CcEEEEECCH--HHHHHHHHHHHHHHHhCCC-CeEEEEecC----CchHHHHHHhCCCCeE---------EE----E---
Confidence 5799999998 8999999999999998664 455554321 1111111111110000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC---Cccc-------ccCC
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC---HPTW-------FHPR 212 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~---~~~~-------~~~~ 212 (462)
.+ ......+.++++.++||++|....-.+.-.+..++. .+||++.+....... ...| +.+.
T Consensus 79 ~P-----~D~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~----~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~ 149 (186)
T PF04413_consen 79 LP-----LDFPWAVRRFLDHWRPDLLIWVETELWPNLLREAKR----RGIPVVLVNARLSERSFRRYRRFPFLFRPLLSR 149 (186)
T ss_dssp --------SSHHHHHHHHHHH--SEEEEES----HHHHHH---------S-EEEEEE--------------HHHHHHGGG
T ss_pred eC-----ccCHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhh----cCCCEEEEeeeeccccchhhhhhHHHHHHHHHh
Confidence 00 111223457799999999887764332222334443 489998775433211 1111 2356
Q ss_pred CcEEEEcCHHHHHHHHHcCCCCCcEEEcCCC
Q 012492 213 VNRCYCPSKEVAKRASYFGLEVSQIRVFGLP 243 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~p 243 (462)
.|.+++.+++..+.+.+.|.++++|.++||.
T Consensus 150 f~~i~aqs~~da~r~~~lG~~~~~v~v~Gnl 180 (186)
T PF04413_consen 150 FDRILAQSEADAERFRKLGAPPERVHVTGNL 180 (186)
T ss_dssp -SEEEESSHHHHHHHHTTT-S--SEEE---G
T ss_pred CCEEEECCHHHHHHHHHcCCCcceEEEeCcc
Confidence 7999999999999999999999999999974
No 156
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=98.02 E-value=0.002 Score=63.42 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=65.3
Q ss_pred HHHHHHcCCCCCCcEEEEEeCC-CCC-cc-HHHHHHHHHHhhhcccCCCCCceEEEEccCCHH-HHHHHhhccCCCC-eE
Q 012492 256 DNLRLELQMDPILPAVLLMGGG-EGM-GP-VKETAMALGESLLDKETGRPIGQLIIICGRNRT-LASTLQSEEWKIP-VK 330 (462)
Q Consensus 256 ~~~r~~l~l~~~~~~iLv~gG~-~~~-~~-~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~-l~~~~~~~~~~~~-V~ 330 (462)
+....+++++.++++|++..|+ .+. +. -.+-+.++++.+.+ .+.++++++|+.+. ..+.+.+. ...+ +.
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-----~~~~ivl~G~~~e~~~~~~i~~~-~~~~~~~ 235 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID-----QGYQVVLFGSAKDHPAGNEIEAL-LPGELRN 235 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-----CCCEEEEEEChhhHHHHHHHHHh-CCccccc
Confidence 3445667776667777666554 333 32 22344456666643 23566665554432 22333322 2222 33
Q ss_pred Eecc--chhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 331 VRGF--ETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 331 ~~g~--~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
+.|. ..++..+++.||++|+.-.| .+-=|.++|+|+|+.-.+
T Consensus 236 l~g~~sL~el~ali~~a~l~I~~DSG-p~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 236 LAGETSLDEAVDLIALAKAVVTNDSG-LMHVAAALNRPLVALYGS 279 (334)
T ss_pred CCCCCCHHHHHHHHHhCCEEEeeCCH-HHHHHHHcCCCEEEEECC
Confidence 5564 37899999999999997543 345578999999987544
No 157
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=97.95 E-value=0.0021 Score=66.19 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=63.0
Q ss_pred hHHHHHHhcchheecC----ChhhHHHHHHhCCCEEEecCCC-C---ccccchHHHHHCCceeeeC---CHHHHH----H
Q 012492 337 QMEKWMGACDCIITKA----GPGTIAEALIRGLPIILNDYIP-G---QEKGNVPYVVDNGAGVFTR---SPKETA----R 401 (462)
Q Consensus 337 ~~~~l~~~aD~vV~~s----g~~t~~EAla~G~PvI~~~~~~-~---~~~~n~~~l~~~G~g~~~~---~~~~la----~ 401 (462)
+..+++..||+-|.|| .|-|.+|+.++|+|.|.++..+ | ++..+ .-...|.-++-. +.++.+ +
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~--~~~~~GV~VvdR~~~n~~e~v~~la~ 539 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE--DPEEYGVYVVDRRDKNYDESVNQLAD 539 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS---HHGGGTEEEE-SSSS-HHHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc--cCcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 6789999999999998 4899999999999999999853 2 11101 112234444332 344444 4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 012492 402 IVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 402 ~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~ 439 (462)
.+......+...|..+++++.++++...|++......+
T Consensus 540 ~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~ 577 (633)
T PF05693_consen 540 FLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEK 577 (633)
T ss_dssp HHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44444445677888888999999998888877666654
No 158
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.82 E-value=0.0032 Score=62.56 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=57.9
Q ss_pred CcEEEEEeCC-CCCcc-HHHHHHHHHHhhhcccCCCCCceEEEEccCCHH---HHHHHhhc-cCCCCeEEeccc--hhHH
Q 012492 268 LPAVLLMGGG-EGMGP-VKETAMALGESLLDKETGRPIGQLIIICGRNRT---LASTLQSE-EWKIPVKVRGFE--TQME 339 (462)
Q Consensus 268 ~~~iLv~gG~-~~~~~-~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~---l~~~~~~~-~~~~~V~~~g~~--~~~~ 339 (462)
.++|++..|+ ...+. -.+-+.++++.|.+ .+.++++++|++++ ..+.+.+. .....+.+.|.. .++.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-----~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ 257 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQA-----RGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELG 257 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHH-----CCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHH
Confidence 3556554443 33332 12344456666643 24566766676542 12333322 112234566753 7899
Q ss_pred HHHHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 340 KWMGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 340 ~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
.+++.||++|+.-.| .+-=|.++|+|+|+.-.+
T Consensus 258 ali~~a~l~v~nDSG-p~HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 258 ALIDHAQLFIGVDSA-PAHIAAAVNTPLICLFGA 290 (352)
T ss_pred HHHHhCCEEEecCCH-HHHHHHHcCCCEEEEECC
Confidence 999999999997543 235578999999987543
No 159
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=97.75 E-value=0.00021 Score=62.88 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=48.1
Q ss_pred HHHHHhhCCCEEEECCcccchHHHHHHHHc---CCCCCCeEEEEecC--CC--CCCcccccCCCcEEEEcCHHHHHHH
Q 012492 157 EAGLMEYKPDIIISVHPLMQHIPLWVLKWQ---GLQKKVIFVTVITD--LN--TCHPTWFHPRVNRCYCPSKEVAKRA 227 (462)
Q Consensus 157 ~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~---~~~~~iP~v~~~~d--~~--~~~~~~~~~~~d~~i~~s~~~~~~l 227 (462)
..++.+.+||+|++++|....+...+++.. +. .+.++|.+.+= .. ....+.+++.+|.+++..++..+.+
T Consensus 85 ~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~-~~~kiIyIES~aRv~~lSlTGklly~~aD~f~VQW~~l~~~y 161 (170)
T PF08660_consen 85 LRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGL-RGSKIIYIESFARVKTLSLTGKLLYPFADRFIVQWEELAEKY 161 (170)
T ss_pred HHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhc-cCCcEEEEEeeeecCCCchHHHHHHHhCCEEEEcCHHHHhHC
Confidence 466889999999999998877655555542 11 26777765431 11 1234567788999999999887653
No 160
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.006 Score=60.12 Aligned_cols=266 Identities=14% Similarity=0.049 Sum_probs=125.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhh
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 141 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 141 (462)
||||||+..+. -|...-+..+...|++.+|+....+++. .+ ...+ .+..+..+..+.....++ +
T Consensus 1 ~~kIliir~~~-iGD~vlt~p~~~~lk~~~P~a~i~~~~~------~~-~~~i-------~~~~p~I~~vi~~~~~~~-~ 64 (334)
T COG0859 1 MMKILVIRLSK-LGDVVLTLPLLRTLKKAYPNAKIDVLVP------KG-FAPI-------LKLNPEIDKVIIIDKKKK-G 64 (334)
T ss_pred CceEEEEeccc-hhHHHhHHHHHHHHHHHCCCCEEEEEec------cc-hHHH-------HhcChHhhhhcccccccc-c
Confidence 68999998875 6999999999999999998754333332 11 1111 000000000000000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCC-Cc-EEEEc
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPR-VN-RCYCP 219 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~-~d-~~i~~ 219 (462)
.......++.+.+++.++|+|+......-.. ++... .++|... ..+.. ....++... .. .-...
T Consensus 65 ------~~~~~~~~l~~~lr~~~yD~vidl~~~~ksa--~l~~~----~~~~~r~-g~~~~-~~r~~~~~~~~~~~~~~~ 130 (334)
T COG0859 65 ------LGLKERLALLRTLRKERYDAVIDLQGLLKSA--LLALL----LGIPFRI-GFDKK-SARELLLNKFYPRLDKPE 130 (334)
T ss_pred ------cchHHHHHHHHHhhccCCCEEEECcccHHHH--HHHHH----hCCCccc-ccccc-cchhHHHHHhhhccCccc
Confidence 0133445677889999999999877543322 22222 1344321 11110 001111100 01 01112
Q ss_pred CHHHHHHHHH----cCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeC-CCCCcc--HHHHHHHHHH
Q 012492 220 SKEVAKRASY----FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGG-GEGMGP--VKETAMALGE 292 (462)
Q Consensus 220 s~~~~~~l~~----~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG-~~~~~~--~~~~l~~l~~ 292 (462)
.+...+.+.. .+..... .....+............+.-.. +++|++..| +.+..+ -.+-+.++++
T Consensus 131 ~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~pg~s~~~~K~wp~e~~~~l~~ 202 (334)
T COG0859 131 GQHVVERYLALLEDLGLYPPP-------EPQLDFPLPRPPIELAKNLAKFD-RPYIVINPGASRGSAKRWPLEHYAELAE 202 (334)
T ss_pred chhHHHHHHHHHHHhcCCCCC-------CCccCcccccCHHHHHHHHHhcC-CCeEEEeccccccccCCCCHHHHHHHHH
Confidence 2333333322 2222111 00001110011111111111111 577877777 554332 2344556667
Q ss_pred hhhcccCCCCCceEEEEccCCHH--HHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEE
Q 012492 293 SLLDKETGRPIGQLIIICGRNRT--LASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPII 368 (462)
Q Consensus 293 ~l~~~~~~~~~~~~lvv~G~~~~--l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI 368 (462)
.+.++ .++++ ++|..++ ..+.+.+ .....+.+.|.. .++..+++.||++|+...|. +-=|.|.|+|+|
T Consensus 203 ~l~~~-----~~~Vv-l~g~~~e~e~~~~i~~-~~~~~~~l~~k~sL~e~~~li~~a~l~I~~DSg~-~HlAaA~~~P~I 274 (334)
T COG0859 203 LLIAK-----GYQVV-LFGGPDEEERAEEIAK-GLPNAVILAGKTSLEELAALIAGADLVIGNDSGP-MHLAAALGTPTI 274 (334)
T ss_pred HHHHC-----CCEEE-EecChHHHHHHHHHHH-hcCCccccCCCCCHHHHHHHHhcCCEEEccCChH-HHHHHHcCCCEE
Confidence 77652 34544 4454442 2222322 111122255543 79999999999999976543 355799999999
Q ss_pred EecCC
Q 012492 369 LNDYI 373 (462)
Q Consensus 369 ~~~~~ 373 (462)
.....
T Consensus 275 ~iyg~ 279 (334)
T COG0859 275 ALYGP 279 (334)
T ss_pred EEECC
Confidence 98754
No 161
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.59 E-value=0.026 Score=53.71 Aligned_cols=260 Identities=14% Similarity=0.119 Sum_probs=138.2
Q ss_pred HHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC--ccc-----------ccCCCcEEEEc
Q 012492 153 AKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH--PTW-----------FHPRVNRCYCP 219 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~--~~~-----------~~~~~d~~i~~ 219 (462)
++.+.+..+..+-+-++.++-+...+ |.+-..+....-.++++++..+... ..| ..+.+.++++
T Consensus 28 a~avi~~a~~~r~~rff~HGqFn~~l--wlall~g~~~~~q~yWhiWGaDLYe~~~~lk~rlfy~lRR~aq~rvg~v~a- 104 (322)
T PRK02797 28 AEAVIAKAKANRAQRFFLHGQFNPTL--WLALLSGKIKPKQFYWHIWGADLYEESKGLKFRLFYPLRRLAQKRVGHVFA- 104 (322)
T ss_pred HHHHHHHHhhCccceEEEecCCCHHH--HHHHHhCCcCccceEEEEEChhhhhcccchhHHHHHHHHHHHHhhcCeEEE-
Confidence 44455556667788888888764443 3332222112334566665432111 111 1234567777
Q ss_pred CHHHHHHHHH--cCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCC-ccHHHHHHHHHHhhhc
Q 012492 220 SKEVAKRASY--FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGM-GPVKETAMALGESLLD 296 (462)
Q Consensus 220 s~~~~~~l~~--~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~-~~~~~~l~~l~~~l~~ 296 (462)
+..+...+.+ .+++.+ ..+.+.-.++..... ..+ -.+..+..+.+|.|-.. ....+++..+.+..
T Consensus 105 trGD~~~~a~~~~~v~~~-llyfpt~m~~~l~~~--~~~-------~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~-- 172 (322)
T PRK02797 105 TRGDLSYFAQRHPKVPGS-LLYFPTRMDPSLNTM--AND-------RQRAGKMTILVGNSGDRSNRHIEALRALHQQF-- 172 (322)
T ss_pred ecchHHHHHHhcCCCCcc-EEecCCcchhhhccc--ccc-------ccCCCceEEEEeCCCCCcccHHHHHHHHHHHh--
Confidence 6666555433 255433 433332222222211 000 01222334444544332 34556666554443
Q ss_pred ccCCCCCceEEEEccC--C-HHHHHHHhhc----cCCCCeEEe-ccc--hhHHHHHHhcchheecC----ChhhHHHHHH
Q 012492 297 KETGRPIGQLIIICGR--N-RTLASTLQSE----EWKIPVKVR-GFE--TQMEKWMGACDCIITKA----GPGTIAEALI 362 (462)
Q Consensus 297 ~~~~~~~~~~lvv~G~--~-~~l~~~~~~~----~~~~~V~~~-g~~--~~~~~l~~~aD~vV~~s----g~~t~~EAla 362 (462)
..++++++..|- + +++.+.+++. -..+++..+ .+. ++...+++.||+.+..- |-+|++=.+.
T Consensus 173 ----~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~ 248 (322)
T PRK02797 173 ----GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQ 248 (322)
T ss_pred ----CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHH
Confidence 246788887765 3 3455555543 223566654 333 68889999999977542 4567889999
Q ss_pred hCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 012492 363 RGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 363 ~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~ 442 (462)
+|+|+++....+-.+ .+.+.|+-++......-...+. +.+++|...-++... ++.++.++.|.++++
T Consensus 249 ~G~~v~l~r~n~fwq-----dl~e~gv~Vlf~~d~L~~~~v~-------e~~rql~~~dk~~I~-Ff~pn~~~~W~~~l~ 315 (322)
T PRK02797 249 LGKPVVLSRDNPFWQ-----DLTEQGLPVLFTGDDLDEDIVR-------EAQRQLASVDKNIIA-FFSPNYLQGWRNALA 315 (322)
T ss_pred CCCcEEEecCCchHH-----HHHhCCCeEEecCCcccHHHHH-------HHHHHHHhhCcceee-ecCHhHHHHHHHHHH
Confidence 999999987644332 4778888775432211111111 122334443333333 888999999999886
Q ss_pred cc
Q 012492 443 QR 444 (462)
Q Consensus 443 ~~ 444 (462)
..
T Consensus 316 ~~ 317 (322)
T PRK02797 316 IA 317 (322)
T ss_pred Hh
Confidence 43
No 162
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.52 E-value=0.016 Score=55.51 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhcccCCCCCceEEEEccCCHH-HHHHHhh-ccCCCCeEEecc--chhHHHHHHhcchheecCChhhHHHH
Q 012492 285 ETAMALGESLLDKETGRPIGQLIIICGRNRT-LASTLQS-EEWKIPVKVRGF--ETQMEKWMGACDCIITKAGPGTIAEA 360 (462)
Q Consensus 285 ~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~-l~~~~~~-~~~~~~V~~~g~--~~~~~~l~~~aD~vV~~sg~~t~~EA 360 (462)
+.+.++++.+.+ . ++++++++|+++. ..+.+.+ .+....+.+.|. ..++..+++.||++|+...| ++-=|
T Consensus 140 ~~~~~l~~~l~~----~-~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Dsg-~~HlA 213 (279)
T cd03789 140 ERFAALADRLLA----R-GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDSG-PMHLA 213 (279)
T ss_pred HHHHHHHHHHHH----C-CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCCH-HHHHH
Confidence 344455566654 1 4666666555432 2233332 111222344554 37899999999999997443 34555
Q ss_pred HHhCCCEEEecCC
Q 012492 361 LIRGLPIILNDYI 373 (462)
Q Consensus 361 la~G~PvI~~~~~ 373 (462)
.++|+|+|+.-.+
T Consensus 214 ~a~~~p~i~l~g~ 226 (279)
T cd03789 214 AALGTPTVALFGP 226 (279)
T ss_pred HHcCCCEEEEECC
Confidence 7999999987654
No 163
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.52 E-value=0.021 Score=55.90 Aligned_cols=98 Identities=12% Similarity=-0.061 Sum_probs=57.5
Q ss_pred CcEEE-EEeCCCCCcc-HHHHHHHHHHhhhcccCCCCCceEEEEccCCHH--HHHHHhhccCCCCeEEeccc--hhHHHH
Q 012492 268 LPAVL-LMGGGEGMGP-VKETAMALGESLLDKETGRPIGQLIIICGRNRT--LASTLQSEEWKIPVKVRGFE--TQMEKW 341 (462)
Q Consensus 268 ~~~iL-v~gG~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~--l~~~~~~~~~~~~V~~~g~~--~~~~~l 341 (462)
.++++ +.|++...+. -.+-+.++++.+.+ .+.++++.+|...+ ..+.+.+. ..++.+.|.. .++..+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~-----~~~~ivl~~G~~~e~~~~~~i~~~--~~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAP-----SGLRIKLPWGAEHEEQRAKRLAEG--FPYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHH-----CCCeEEEeCCCHHHHHHHHHHHcc--CCcceecCCCCHHHHHHH
Confidence 45554 4455443332 12334456666643 14555554454332 23334332 2346666654 789999
Q ss_pred HHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 342 MGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 342 ~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
++.||++|+...| .+-=|.++|+|+|+.-.+
T Consensus 251 i~~a~l~I~nDSG-p~HlA~A~g~p~valfGp 281 (322)
T PRK10964 251 LAGAKAVVSVDTG-LSHLTAALDRPNITLYGP 281 (322)
T ss_pred HHhCCEEEecCCc-HHHHHHHhCCCEEEEECC
Confidence 9999999997543 346689999999997654
No 164
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.45 E-value=0.013 Score=60.03 Aligned_cols=266 Identities=12% Similarity=0.070 Sum_probs=142.6
Q ss_pred HHHHHHHhhCCCEEEECCcccchHH--HHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEc---C-HHHHHHHH
Q 012492 155 EVEAGLMEYKPDIIISVHPLMQHIP--LWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCP---S-KEVAKRAS 228 (462)
Q Consensus 155 ~l~~~l~~~kPDvVi~~~~~~~~~~--~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~---s-~~~~~~l~ 228 (462)
++.+.+++-+.|++|...++..+.- ..+.+ ..|+=...-.+- ..--....|++++- | .+.++.+.
T Consensus 649 kiA~~I~qD~I~ILvnlnGyTkgarneifAlr------PAPIQv~wlGyP---gTtGa~~mDYiITDs~tsPl~~a~~ys 719 (966)
T KOG4626|consen 649 KIADKIRQDKIHILVNLNGYTKGARNEIFALR------PAPIQVMWLGYP---GTTGATFMDYIITDSVTSPLELAQQYS 719 (966)
T ss_pred HHHHHHhhcCceEEEeccccccccccceeecc------CCceeEEeecCC---CCCCCceeeEEeecccCChHHHHHHHH
Confidence 5667899999999998877654320 11221 344321111110 01112345666542 2 23333333
Q ss_pred H-c-CCCCCcEEEcCCCCCh--hhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCc
Q 012492 229 Y-F-GLEVSQIRVFGLPIRP--SFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIG 304 (462)
Q Consensus 229 ~-~-gi~~~~i~v~g~pv~~--~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 304 (462)
+ . .+| ....+|.+-.. ....++.. -.|..++++++. +++..+..+ .+--.+.+...+..|+. .|+-
T Consensus 720 EkLv~lP--h~ffi~d~~qk~~~~~dpn~k--P~r~~y~Lp~d~-vvf~~FNqL-yKidP~~l~~W~~ILk~----VPnS 789 (966)
T KOG4626|consen 720 EKLVYLP--HCFFIGDHKQKNQDVLDPNNK--PTRSQYGLPEDA-VVFCNFNQL-YKIDPSTLQMWANILKR----VPNS 789 (966)
T ss_pred HHHhhCC--ceEEecCcccccccccCCCCC--CCCCCCCCCCCe-EEEeechhh-hcCCHHHHHHHHHHHHh----CCcc
Confidence 2 2 344 34445443221 12222111 245678998765 333222221 23223344433333432 3554
Q ss_pred eEEEEc----cCCHHHHHHHhhccCC-CCeEEeccc--hhHHHHHHhcchheec---CChhhHHHHHHhCCCEEEecCCC
Q 012492 305 QLIIIC----GRNRTLASTLQSEEWK-IPVKVRGFE--TQMEKWMGACDCIITK---AGPGTIAEALIRGLPIILNDYIP 374 (462)
Q Consensus 305 ~~lvv~----G~~~~l~~~~~~~~~~-~~V~~~g~~--~~~~~l~~~aD~vV~~---sg~~t~~EAla~G~PvI~~~~~~ 374 (462)
.+++.+ |+ ...++..+++|++ ++|.|.+-. ++=-+-...+|+.+-. .|..|-+|.+-+|+|+|..|...
T Consensus 790 ~LwllrfPa~ge-~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~ 868 (966)
T KOG4626|consen 790 VLWLLRFPAVGE-QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGET 868 (966)
T ss_pred eeEEEeccccch-HHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCcccchhhhccCCceeecccHH
Confidence 333322 33 2466777777765 667776554 3333455677876633 26778899999999999998643
Q ss_pred CccccchHHHHHCCceee-eCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--C-CcHHHHHHHHHHHHH
Q 012492 375 GQEKGNVPYVVDNGAGVF-TRSPKETARIVTEWFSTKTDELKRMSENALKLA--Q-PEAVVDIVKDIHDLA 441 (462)
Q Consensus 375 ~~~~~n~~~l~~~G~g~~-~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~--~-~~~~~~ia~~i~~l~ 441 (462)
.-....+..+...|+|-+ .++.++..+.-.+|- .|.+.++++....+... . -+.....+..++++.
T Consensus 869 lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~La-td~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y 938 (966)
T KOG4626|consen 869 LASRVAASLLTALGLGHLIAKNREEYVQIAVRLA-TDKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLY 938 (966)
T ss_pred HHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Confidence 222223455667788754 467888888888887 68888888887665543 2 244555555555543
No 165
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.42 E-value=0.051 Score=55.89 Aligned_cols=274 Identities=14% Similarity=0.097 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccc--------c---cCCCcE
Q 012492 147 AMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTW--------F---HPRVNR 215 (462)
Q Consensus 147 ~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~--------~---~~~~d~ 215 (462)
..+..++.++.+.++ .-|+|-.+.......|.. .|.++ ++.++..+.|-..+....+ + .-.+|.
T Consensus 126 ~vN~~FA~~i~~~~~--~~D~VWVhDYhL~llP~~-LR~~~--~~~~IgfFlHiPFPs~e~fr~lP~r~eiL~glL~aDl 200 (474)
T PF00982_consen 126 RVNRRFADAIAEVYR--PGDLVWVHDYHLMLLPQM-LRERG--PDARIGFFLHIPFPSSEIFRCLPWREEILRGLLGADL 200 (474)
T ss_dssp HHHHHHHHHHGGG----TT-EEEEESGGGTTHHHH-HHHTT----SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSE
T ss_pred HHHHHHHHHHHHhCc--CCCEEEEeCCcHHHHHHH-HHhhc--CCceEeeEEecCCCCHHHHhhCCcHHHHHHHhhcCCE
Confidence 345566666544444 335666666655555543 34433 4777777776543211100 0 124788
Q ss_pred EEEcCHHHHHHHHH-----cCCC--CC-----------cEEEcCCCCChhhhccc----C---ChHHHHHHcCCCCCCcE
Q 012492 216 CYCPSKEVAKRASY-----FGLE--VS-----------QIRVFGLPIRPSFVRAV----I---SKDNLRLELQMDPILPA 270 (462)
Q Consensus 216 ~i~~s~~~~~~l~~-----~gi~--~~-----------~i~v~g~pv~~~~~~~~----~---~~~~~r~~l~l~~~~~~ 270 (462)
+-..++...+.+.. .|+. .. ++.+.+.+|++..+... . ..++++++++ ++..
T Consensus 201 IgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~---~~~~ 277 (474)
T PF00982_consen 201 IGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK---GKRK 277 (474)
T ss_dssp EEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT---T-SE
T ss_pred EEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC---CCcE
Confidence 88888777766532 2321 11 24455667776544320 0 1234666664 3223
Q ss_pred EEEEeCCCC-CccHHHHHHHHHHhhhcccCCCCC----ceEEEEccCC----H---HHHHHHhh--------ccC--CCC
Q 012492 271 VLLMGGGEG-MGPVKETAMALGESLLDKETGRPI----GQLIIICGRN----R---TLASTLQS--------EEW--KIP 328 (462)
Q Consensus 271 iLv~gG~~~-~~~~~~~l~~l~~~l~~~~~~~~~----~~~lvv~G~~----~---~l~~~~~~--------~~~--~~~ 328 (462)
+++...+.. .+++.+-+.++-+.|.+ +|+ +.++.++-+. . ++++.+++ ++. ...
T Consensus 278 ii~gvDrld~~kGi~~kl~Afe~fL~~----~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~P 353 (474)
T PF00982_consen 278 IIVGVDRLDYTKGIPEKLRAFERFLER----YPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTP 353 (474)
T ss_dssp EEEEE--B-GGG-HHHHHHHHHHHHHH-----GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-S
T ss_pred EEEEeccchhhcCHHHHHHHHHHHHHh----CcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCcee
Confidence 455444544 46677666655433332 343 3444443221 1 13333332 121 134
Q ss_pred eEEecc-c--hhHHHHHHhcchheecC---C-hhhHHHHHHhCCC----EEEecCCCCccccchHHHHHCCceeeeC--C
Q 012492 329 VKVRGF-E--TQMEKWMGACDCIITKA---G-PGTIAEALIRGLP----IILNDYIPGQEKGNVPYVVDNGAGVFTR--S 395 (462)
Q Consensus 329 V~~~g~-~--~~~~~l~~~aD~vV~~s---g-~~t~~EAla~G~P----vI~~~~~~~~~~~n~~~l~~~G~g~~~~--~ 395 (462)
|.++.. . ++...+|+.||+++.+| | ..+..|..+|..+ +|++.+.+ .+..|.+ .++.++ |
T Consensus 354 I~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaG-----aa~~L~~--~al~VNP~d 426 (474)
T PF00982_consen 354 IIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAG-----AAEQLSE--AALLVNPWD 426 (474)
T ss_dssp EEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBG-----GGGT-TT--S-EEE-TT-
T ss_pred EEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCC-----HHHHcCC--ccEEECCCC
Confidence 665543 2 68889999999987665 3 5667999999887 44444322 2223321 335554 7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 012492 396 PKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 396 ~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~ 439 (462)
.++++++|.+.|...++.|+...+..++....+.+..=++.+.+
T Consensus 427 ~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~~~~~W~~~~l~ 470 (474)
T PF00982_consen 427 IEEVADAIHEALTMPPEERKERHARLREYVREHDVQWWAESFLR 470 (474)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhCCHHHHHHHHHH
Confidence 99999999999966777776666666666655554444444433
No 166
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0025 Score=52.32 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=81.6
Q ss_pred EEEEeCCCCCccHHHHHHHHH-HhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcch
Q 012492 271 VLLMGGGEGMGPVKETAMALG-ESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDC 347 (462)
Q Consensus 271 iLv~gG~~~~~~~~~~l~~l~-~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~ 347 (462)
++|+.|+. +.++..++...- ..+.+ +-.-++|+-.|+++-.. + ...++.||. +.|..+...|.+
T Consensus 2 ifVTvGst-f~~f~rlv~k~e~~el~~----~i~e~lIvQyGn~d~kp--v------agl~v~~F~~~~kiQsli~darI 68 (161)
T COG5017 2 IFVTVGST-FYPFNRLVLKIEVLELTE----LIQEELIVQYGNGDIKP--V------AGLRVYGFDKEEKIQSLIHDARI 68 (161)
T ss_pred eEEEecCc-cchHHHHHhhHHHHHHHH----HhhhheeeeecCCCccc--c------cccEEEeechHHHHHHHhhcceE
Confidence 46676776 445555443310 11111 11236788888875211 1 125666765 789999999999
Q ss_pred heecCChhhHHHHHHhCCCEEEecCCC-------CccccchHHHHHCCceeeeCCHHH-HHHHHHH
Q 012492 348 IITKAGPGTIAEALIRGLPIILNDYIP-------GQEKGNVPYVVDNGAGVFTRSPKE-TARIVTE 405 (462)
Q Consensus 348 vV~~sg~~t~~EAla~G~PvI~~~~~~-------~~~~~n~~~l~~~G~g~~~~~~~~-la~~i~~ 405 (462)
+|+++|.++++-++..++|.|+.|... ++|..-+..+.+.++.+.+++.+. +.+.++.
T Consensus 69 VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spte~~L~a~l~~ 134 (161)
T COG5017 69 VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPTELVLQAGLQV 134 (161)
T ss_pred EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcCCchhhHHhHhh
Confidence 999999999999999999999998742 455556778888898888886554 4444433
No 167
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.35 E-value=0.013 Score=57.27 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=56.1
Q ss_pred CCcEEEEE-eCCCCCccH-HHHHHHHHHhhhcccCCCCCceEEEEccCCHH--HHHHHhhccCCCCeEEeccc--hhHHH
Q 012492 267 ILPAVLLM-GGGEGMGPV-KETAMALGESLLDKETGRPIGQLIIICGRNRT--LASTLQSEEWKIPVKVRGFE--TQMEK 340 (462)
Q Consensus 267 ~~~~iLv~-gG~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~--l~~~~~~~~~~~~V~~~g~~--~~~~~ 340 (462)
++++|++. |++...+.. .+-+.++++.|.+ .++++++++|...+ ..+.+.+. . .+..+.|.. .++..
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~-----~~~~~vl~~g~~~e~~~~~~i~~~-~-~~~~l~g~~sL~el~a 250 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA-----RGLQIVLPWGNDAEKQRAERIAEA-L-PGAVVLPKMSLAEVAA 250 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH-----CCCeEEEeCCCHHHHHHHHHHHhh-C-CCCeecCCCCHHHHHH
Confidence 45566554 444433322 2344456666643 14565555454432 22333321 1 123455643 68899
Q ss_pred HHHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 341 WMGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 341 l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
+++.||++|+.-.| .+-=|.++|+|+|..-.+
T Consensus 251 li~~a~l~I~~DSg-p~HlAaa~g~P~i~lfg~ 282 (319)
T TIGR02193 251 LLAGADAVVGVDTG-LTHLAAALDKPTVTLYGA 282 (319)
T ss_pred HHHcCCEEEeCCCh-HHHHHHHcCCCEEEEECC
Confidence 99999999997543 345578999999987543
No 168
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.16 E-value=0.071 Score=51.51 Aligned_cols=217 Identities=14% Similarity=0.094 Sum_probs=118.1
Q ss_pred HHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC--CCccc----c-------cCCCcEEEEcCH
Q 012492 155 EVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT--CHPTW----F-------HPRVNRCYCPSK 221 (462)
Q Consensus 155 ~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~--~~~~~----~-------~~~~d~~i~~s~ 221 (462)
.+.+..+..+-+=++.++-+...+ |++-..+....-.++++++..+. ....| + .+.+.++++ +.
T Consensus 69 avi~~a~~~r~~kff~HGqFn~~l--wlaLl~g~~~~~k~~WhIWGaDLYe~~~~~k~rlfy~lRr~aq~rvg~V~a-t~ 145 (360)
T PF07429_consen 69 AVIAKAKADRADKFFLHGQFNPWL--WLALLFGKIKLKKCYWHIWGADLYEDSRSLKFRLFYFLRRLAQKRVGHVFA-TR 145 (360)
T ss_pred HHHHHHhhCccceEEEeccCcHHH--HHHHHcCCccccceEEEEeCchhhccccccchhHHHHHHHHHHhhcCeEEE-Ec
Confidence 344455667888888888664443 33322222123455666654321 11111 1 133455655 45
Q ss_pred HHHHHHHH-cCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCC-ccHHHHHHHHHHhhhcccC
Q 012492 222 EVAKRASY-FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGM-GPVKETAMALGESLLDKET 299 (462)
Q Consensus 222 ~~~~~l~~-~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~-~~~~~~l~~l~~~l~~~~~ 299 (462)
.+...+.+ ++-.+....+.+..+++.......+ -..+.+.-+.+|.|-.. ....+++.++.+...
T Consensus 146 GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~~---------~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~---- 212 (360)
T PF07429_consen 146 GDLAYFQQRYPRVPASLLYFPTRMDPALTLSEKN---------KKNKGKLTILVGNSGDPSNNHIEALEALKQQFG---- 212 (360)
T ss_pred chHHHHHHHcCCCCceEEEcCCCCchhhhccccc---------cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcC----
Confidence 55555554 3322334555565565544322100 01122333444544333 346666766654332
Q ss_pred CCCCceEEEEccCC---HHHHHHHhhc----cCCCCeEEe-ccc--hhHHHHHHhcchheecC----ChhhHHHHHHhCC
Q 012492 300 GRPIGQLIIICGRN---RTLASTLQSE----EWKIPVKVR-GFE--TQMEKWMGACDCIITKA----GPGTIAEALIRGL 365 (462)
Q Consensus 300 ~~~~~~~lvv~G~~---~~l~~~~~~~----~~~~~V~~~-g~~--~~~~~l~~~aD~vV~~s----g~~t~~EAla~G~ 365 (462)
.+.++++..|-+ .++.+++.+. -...++.++ .+. +|..++++.||+.+... |-++++=++.+|+
T Consensus 213 --~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~ 290 (360)
T PF07429_consen 213 --DDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGK 290 (360)
T ss_pred --CCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCC
Confidence 356777766543 3455555443 233567654 454 68889999999988754 4567899999999
Q ss_pred CEEEecCCCCccccchHHHHHCCceeeeC
Q 012492 366 PIILNDYIPGQEKGNVPYVVDNGAGVFTR 394 (462)
Q Consensus 366 PvI~~~~~~~~~~~n~~~l~~~G~g~~~~ 394 (462)
||++....+- -+.+.+.|..++..
T Consensus 291 ~v~L~~~np~-----~~~l~~~~ipVlf~ 314 (360)
T PF07429_consen 291 KVFLSRDNPF-----WQDLKEQGIPVLFY 314 (360)
T ss_pred eEEEecCChH-----HHHHHhCCCeEEec
Confidence 9999875432 23577788766654
No 169
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.10 E-value=0.033 Score=55.12 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=57.7
Q ss_pred CCcEEEEEeCCCC-Ccc-HHHHHHHHHHhhhcccCCCCCceEEEEccCCHH---HHHHHhhc-cCCCCeEEeccc--hhH
Q 012492 267 ILPAVLLMGGGEG-MGP-VKETAMALGESLLDKETGRPIGQLIIICGRNRT---LASTLQSE-EWKIPVKVRGFE--TQM 338 (462)
Q Consensus 267 ~~~~iLv~gG~~~-~~~-~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~---l~~~~~~~-~~~~~V~~~g~~--~~~ 338 (462)
++++|++..|+.. .+. -.+-+.++++.|.+ .+.++++++|+++. ..+.+.+. +...-+.+.|.. .++
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~-----~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el 254 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHA-----RGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQL 254 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHh-----CCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHH
Confidence 3456655544432 222 13344456666643 24566666665421 22334322 111224456654 799
Q ss_pred HHHHHhcchheecCChhhHHHHHHhCCCEEEecC
Q 012492 339 EKWMGACDCIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 339 ~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
..+++.||++|+.-.| .+-=|.|+|+|+|+.-.
T Consensus 255 ~ali~~a~l~Vs~DSG-p~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 255 AALIDHARLFIGVDSV-PMHMAAALGTPLVALFG 287 (344)
T ss_pred HHHHHhCCEEEecCCH-HHHHHHHcCCCEEEEEC
Confidence 9999999999997543 34668999999998754
No 170
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=97.09 E-value=0.22 Score=50.91 Aligned_cols=272 Identities=13% Similarity=0.065 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHhhCC-CEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccc--------c---cCCCc
Q 012492 147 AMAAYYAKEVEAGLMEYKP-DIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTW--------F---HPRVN 214 (462)
Q Consensus 147 ~~~~~~~~~l~~~l~~~kP-DvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~--------~---~~~~d 214 (462)
..+..++.++ ++..+| |+|-++.......|. ..|..+ .+.++-.+.|-..+....| + .-.+|
T Consensus 108 ~VN~~FA~~v---~~~~~~~D~VWVHDYhL~llp~-~LR~~~--~~~~IgFFlHiPFPs~eifr~LP~r~eil~glL~aD 181 (474)
T PRK10117 108 RVNALLADKL---LPLLKDDDIIWIHDYHLLPFAS-ELRKRG--VNNRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYD 181 (474)
T ss_pred HHHHHHHHHH---HHhcCCCCEEEEeccHhhHHHH-HHHHhC--CCCcEEEEEeCCCCChHHHhhCCChHHHHHHHHhCc
Confidence 3455666655 444555 577666655544443 344433 3555555555433211100 0 01356
Q ss_pred EEEEcCHHHHHHHHH-----cCCCC------------CcEEEcCCCCChhhhcccC------ChHHHHHHcCCCCCCcEE
Q 012492 215 RCYCPSKEVAKRASY-----FGLEV------------SQIRVFGLPIRPSFVRAVI------SKDNLRLELQMDPILPAV 271 (462)
Q Consensus 215 ~~i~~s~~~~~~l~~-----~gi~~------------~~i~v~g~pv~~~~~~~~~------~~~~~r~~l~l~~~~~~i 271 (462)
.+-..++...+.+.+ .|+.. -++.+.+.+|+++.+.... ...+++++++ ++++|
T Consensus 182 lIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~---~~~li 258 (474)
T PRK10117 182 LLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELK---NVQNI 258 (474)
T ss_pred cceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHcC---CCeEE
Confidence 666666666655432 12211 1234455666765443211 1123455553 34433
Q ss_pred EEEeCCCCCccHHHHHHHHHHhhhcccCCCCCc----eEEEEccCC----H---HHHHHHhhc--------cC--CCCeE
Q 012492 272 LLMGGGEGMGPVKETAMALGESLLDKETGRPIG----QLIIICGRN----R---TLASTLQSE--------EW--KIPVK 330 (462)
Q Consensus 272 Lv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~----~~lvv~G~~----~---~l~~~~~~~--------~~--~~~V~ 330 (462)
+-+-+....|++.+-+.++-..|.+ +|++ .++.++-+. . ++++.++++ +- ...|.
T Consensus 259 lgVDRLDytKGi~~rl~Afe~fL~~----~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~ 334 (474)
T PRK10117 259 FSVERLDYSKGLPERFLAYEALLEK----YPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLY 334 (474)
T ss_pred EEecccccccCHHHHHHHHHHHHHh----ChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEE
Confidence 3333334457787777766443432 4543 344443221 1 234444332 11 12344
Q ss_pred Eecc-c--hhHHHHHHhcchheecC---C-hhhHHHHHHhCCC-----EEEecCCCCccccchHHHHHCCceeeeC--CH
Q 012492 331 VRGF-E--TQMEKWMGACDCIITKA---G-PGTIAEALIRGLP-----IILNDYIPGQEKGNVPYVVDNGAGVFTR--SP 396 (462)
Q Consensus 331 ~~g~-~--~~~~~l~~~aD~vV~~s---g-~~t~~EAla~G~P-----vI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~ 396 (462)
++.- . +++..+|+.||+.+.+| | -.+.-|..+|..| +|++.+. +.+..| +.+++++ |.
T Consensus 335 y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefA-----GaA~~L---~~AllVNP~d~ 406 (474)
T PRK10117 335 YLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFA-----GAANEL---TSALIVNPYDR 406 (474)
T ss_pred EecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEeccc-----chHHHh---CCCeEECCCCH
Confidence 4322 1 67789999999977655 3 4567899999763 5555442 234445 2355554 79
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 012492 397 KETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 397 ~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~ 439 (462)
++++++|.+.|...++.|++-.+..++....+....=++.+.+
T Consensus 407 ~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~ 449 (474)
T PRK10117 407 DEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFIS 449 (474)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHH
Confidence 9999999999976777776666666677666555444443333
No 171
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.045 Score=53.24 Aligned_cols=255 Identities=14% Similarity=0.119 Sum_probs=131.2
Q ss_pred HHHHhhCCCEEEECCcc-----cchHHHHHHHHcCCCCCCeEEEEecCCCC-CC--cccccC--------CCcEEEEcCH
Q 012492 158 AGLMEYKPDIIISVHPL-----MQHIPLWVLKWQGLQKKVIFVTVITDLNT-CH--PTWFHP--------RVNRCYCPSK 221 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~-----~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~--~~~~~~--------~~d~~i~~s~ 221 (462)
..++.++||+|++.... ...+.++.+- .+ ..+|++.+.++-.. .+ ..+... ..|.++...+
T Consensus 71 ~~i~~fk~d~iv~~~~~~~~~~~~~~~~~a~l-~~--~~l~~~~w~te~p~~~~~~~~~~~~~~~~~~l~~fd~v~~~g~ 147 (373)
T COG4641 71 LYIREFKPDIIVNMSGDDQPDEESTIDLWAWL-KR--KCLPVIVWYTEDPYDTDIFSQVAEEQLARRPLFIFDNVLSFGG 147 (373)
T ss_pred HHHHhcCCcEEEEecccccccceehHHHHHHh-hc--CCcceEEEEeccchhhhhhhhhhHHHhhccccchhhhhhhccc
Confidence 56899999999987754 2222222221 11 37887766665310 00 011111 1122333333
Q ss_pred HH-HHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCC
Q 012492 222 EV-AKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETG 300 (462)
Q Consensus 222 ~~-~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~ 300 (462)
.. ...+.+.+. ..+...++.++++..+.+ ..++.. -+. -+.++|.... +..+.++++.-.-.. +
T Consensus 148 ~l~~~~yyq~~~-~~~~~~~~~a~d~~~~~~-i~~da~-------~~~-dL~~ign~~p--Dr~e~~ke~~~~ps~---k 212 (373)
T COG4641 148 GLVANKYYQEGG-ARNCYYLPWAVDDSLFHP-IPPDAS-------YDV-DLNLIGNPYP--DRVEEIKEFFVEPSF---K 212 (373)
T ss_pred hHHHHHHHHhhc-ccceeccCccCCchhccc-CCcccc-------cee-eeEEecCCCc--cHHHHHHHHhhccch---h
Confidence 33 445543332 245677788887766554 111110 001 1333433322 233344433211000 0
Q ss_pred CCCceEEEEccCCHHHHHHHhhccCCCCeEEeccc---hhHHHHHHhcchheec----------CChhhHHHHHHhCCCE
Q 012492 301 RPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE---TQMEKWMGACDCIITK----------AGPGTIAEALIRGLPI 367 (462)
Q Consensus 301 ~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~---~~~~~l~~~aD~vV~~----------sg~~t~~EAla~G~Pv 367 (462)
....+...+.|.. +...+....+..++...|+. ..+...++.-|+.+-- +-.+-+-|+++||.|.
T Consensus 213 l~v~rr~~~~g~~--y~~~~~~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~l 290 (373)
T COG4641 213 LMVDRRFYVLGPR--YPDDIWGRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFL 290 (373)
T ss_pred hhccceeeecCCc--cchhhhcccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCcc
Confidence 0110223344544 22222222345566666665 3455666666665421 1256689999999999
Q ss_pred EEecCCCCccccchHHHHHCCce-eeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--CcHHHHHHHHHHH
Q 012492 368 ILNDYIPGQEKGNVPYVVDNGAG-VFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQ--PEAVVDIVKDIHD 439 (462)
Q Consensus 368 I~~~~~~~~~~~n~~~l~~~G~g-~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~--~~~~~~ia~~i~~ 439 (462)
|..... -.+-+...|-. ++..|.+++.+.+..++ ++++.|+++++++.+.+. ....+++...+..
T Consensus 291 iT~~~~------~~e~~f~pgk~~iv~~d~kdl~~~~~yll-~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~ 358 (373)
T COG4641 291 ITDYWK------DLEKFFKPGKDIIVYQDSKDLKEKLKYLL-NHPDERKEIAECAYERVLARHTYEERIFKLLNE 358 (373)
T ss_pred ccccHH------HHHHhcCCchheEEecCHHHHHHHHHHHh-cCcchHHHHHHhhHHHHHHhccHHHHHHHHHHH
Confidence 886642 12223344543 44568999999999999 899999999999977653 2344555444433
No 172
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.00 E-value=0.0045 Score=52.31 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHHHHHhhCCCEEEECCcccchH-HHHHHHHcCCCCC-CeEEEEecCC
Q 012492 154 KEVEAGLMEYKPDIIISVHPLMQHI-PLWVLKWQGLQKK-VIFVTVITDL 201 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~~~~~~-~~~~~~~~~~~~~-iP~v~~~~d~ 201 (462)
.++.+++++.+||+||++.+..... +..+++. .+ +|+|...|+.
T Consensus 64 ~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~----~~~~~~i~~~hg~ 109 (139)
T PF13477_consen 64 FRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKL----LKNKKVIYTVHGS 109 (139)
T ss_pred HHHHHHhccCCCCEEEEecCChHHHHHHHHHHH----cCCCCEEEEecCC
Confidence 4788999999999999998765333 2233343 34 8998777754
No 173
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.92 E-value=0.3 Score=54.00 Aligned_cols=262 Identities=12% Similarity=0.125 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHhhCC--CEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcc-----cc------cCCCc
Q 012492 148 MAAYYAKEVEAGLMEYKP--DIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPT-----WF------HPRVN 214 (462)
Q Consensus 148 ~~~~~~~~l~~~l~~~kP--DvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~-----~~------~~~~d 214 (462)
.+..++.++ ++..+| |+|-++.......|..+ |.+. ++.++-.+.|-..+.... |- .-.+|
T Consensus 186 vN~~FA~~v---~~~~~~~~d~VWVhDYhL~llP~~L-R~~~--~~~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aD 259 (854)
T PLN02205 186 VNKIFADRI---MEVINPEDDFVWIHDYHLMVLPTFL-RKRF--NRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSD 259 (854)
T ss_pred HHHHHHHHH---HHHhCCCCCEEEEeCchhhHHHHHH-HhhC--CCCcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCC
Confidence 344555544 455566 68877776665555433 4332 466666666654321110 10 12467
Q ss_pred EEEEcCHHHHHHHHH-----cCCCC-------------C--cEEEcCCCCChhhhccc-C------ChHHHHHHcCCCCC
Q 012492 215 RCYCPSKEVAKRASY-----FGLEV-------------S--QIRVFGLPIRPSFVRAV-I------SKDNLRLELQMDPI 267 (462)
Q Consensus 215 ~~i~~s~~~~~~l~~-----~gi~~-------------~--~i~v~g~pv~~~~~~~~-~------~~~~~r~~l~l~~~ 267 (462)
.+-..+...++-+.. .|+.. . +|.+.+.+|++..+... . ...+++++++- ++
T Consensus 260 lIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 338 (854)
T PLN02205 260 LIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD-QD 338 (854)
T ss_pred eEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CC
Confidence 776666666655432 23321 1 23345556666543211 1 11244555531 13
Q ss_pred CcEEEEEeCCCC-CccHHHHHHHHHHhhhcccCCCCCc----eEEEEccCC----H---HHHHHHhh--------ccC--
Q 012492 268 LPAVLLMGGGEG-MGPVKETAMALGESLLDKETGRPIG----QLIIICGRN----R---TLASTLQS--------EEW-- 325 (462)
Q Consensus 268 ~~~iLv~gG~~~-~~~~~~~l~~l~~~l~~~~~~~~~~----~~lvv~G~~----~---~l~~~~~~--------~~~-- 325 (462)
++ +++....+. .+++.+-+.++-+.|.+ +|++ .++.++-+. . +++..+++ ++-
T Consensus 339 ~~-~ilgVDrlD~~KGi~~kl~A~e~~L~~----~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~ 413 (854)
T PLN02205 339 RI-MLLGVDDMDIFKGISLKLLAMEQLLMQ----HPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPG 413 (854)
T ss_pred CE-EEEEccCcccccCHHHHHHHHHHHHHh----CccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 33 444444444 57777777766444433 5654 344443221 1 23333322 121
Q ss_pred CCCeEEecc-c--hhHHHHHHhcchheecC---C-hhhHHHHHHhCCC-------------------EEEecCCCCcccc
Q 012492 326 KIPVKVRGF-E--TQMEKWMGACDCIITKA---G-PGTIAEALIRGLP-------------------IILNDYIPGQEKG 379 (462)
Q Consensus 326 ~~~V~~~g~-~--~~~~~l~~~aD~vV~~s---g-~~t~~EAla~G~P-------------------vI~~~~~~~~~~~ 379 (462)
...|+++.- . +++..+|+.||+++.+| | -.+..|..+|..+ +|++.+ .+
T Consensus 414 ~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEf-----aG 488 (854)
T PLN02205 414 YDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEF-----IG 488 (854)
T ss_pred CceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeec-----cc
Confidence 134665532 2 68889999999987666 3 3467898888642 333333 22
Q ss_pred chHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcH
Q 012492 380 NVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEA 429 (462)
Q Consensus 380 n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~ 429 (462)
.+..| .| ++.++ |.++++++|.+.|...++.++.-.++.+++...+.
T Consensus 489 aa~~L--~~-Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d 537 (854)
T PLN02205 489 CSPSL--SG-AIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVSTHD 537 (854)
T ss_pred hhHHh--Cc-CeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCC
Confidence 33444 23 45554 79999999999986566555555555566665443
No 174
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.22 Score=49.96 Aligned_cols=219 Identities=14% Similarity=0.095 Sum_probs=123.4
Q ss_pred CcEEEEcCHHHHHHHHH-cCCCCCcEEEcCCCCChhhhcccCCh---HHHHHHcCCCCCCcEEEEEeCCCCCc------c
Q 012492 213 VNRCYCPSKEVAKRASY-FGLEVSQIRVFGLPIRPSFVRAVISK---DNLRLELQMDPILPAVLLMGGGEGMG------P 282 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l~~-~gi~~~~i~v~g~pv~~~~~~~~~~~---~~~r~~l~l~~~~~~iLv~gG~~~~~------~ 282 (462)
.|.+.+.++.......+ .++.+.++..+|.|-...+....... ......++++.++++|+...--.+.. .
T Consensus 149 ~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~~~~~ 228 (388)
T COG1887 149 WDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDKKVILYAPTFRDNDVLIGTQF 228 (388)
T ss_pred eeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccCceEEecCCccCCccccchhh
Confidence 35566666666555343 47778899999999877555432111 12345567777788777754322222 1
Q ss_pred HHHH--HHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhc-cCCCCeEEeccchhHHHHHHhcchheecCChhhHHH
Q 012492 283 VKET--AMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSE-EWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAE 359 (462)
Q Consensus 283 ~~~~--l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~-~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~E 359 (462)
.... ..++.+.+.+ .++. ++.-..+......... ...+.+..+....++.++|..+|++|+. ...+..|
T Consensus 229 ~~~~~~~~~~~~~l~~-----~~~~--ii~k~Hp~is~~~~~~~~~~~~~~~vs~~~di~dll~~sDiLITD-ySSv~fd 300 (388)
T COG1887 229 FNLDIDIEKLKEKLGE-----NEYV--IIVKPHPLISDKIDKRYALDDFVLDVSDNADINDLLLVSDILITD-YSSVIFD 300 (388)
T ss_pred hhhhhhHHHHHHhhcc-----CCeE--EEEecChhhhhhhhhhhhccceeEecccchhHHHHHhhhCEEEee-chHHHHH
Confidence 1111 1222222221 2333 3333333222222111 1222233343356899999999999995 4468999
Q ss_pred HHHhCCCEEEecCCCCcc---ccchHHHHHCCceeeeCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCcHHHHH
Q 012492 360 ALIRGLPIILNDYIPGQE---KGNVPYVVDNGAGVFTRSPKETARIVTEWFST---KTDELKRMSENALKLAQPEAVVDI 433 (462)
Q Consensus 360 Ala~G~PvI~~~~~~~~~---~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~---d~~~~~~m~~~a~~~~~~~~~~~i 433 (462)
+|.+.+|||..-....+. .+-........-|-++.+..++.++|...+.. +.+.++...+...++....+++++
T Consensus 301 f~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~~~~~~~~~k~~~~~~~~~~~~dg~ss~ri 380 (388)
T COG1887 301 FMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYDEDGNYDLEKLRVFNDKFNSYEDGRSSERI 380 (388)
T ss_pred HHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhhcccchhHHHHHHHHHhhcccccccHHHHH
Confidence 999999999986532111 11111223334566777888888888887721 234444555555555566788888
Q ss_pred HHHHHH
Q 012492 434 VKDIHD 439 (462)
Q Consensus 434 a~~i~~ 439 (462)
++.+.+
T Consensus 381 ~~~i~~ 386 (388)
T COG1887 381 LKLIFK 386 (388)
T ss_pred HHHHhc
Confidence 877654
No 175
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=96.37 E-value=0.15 Score=47.74 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=54.3
Q ss_pred CCCcEEEEEeCCCC-Ccc-HHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhc--cC-CCCeEEeccc--hhH
Q 012492 266 PILPAVLLMGGGEG-MGP-VKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSE--EW-KIPVKVRGFE--TQM 338 (462)
Q Consensus 266 ~~~~~iLv~gG~~~-~~~-~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~--~~-~~~V~~~g~~--~~~ 338 (462)
.++++|++..|+.. .+. -.+.+.++++.|.+. ..++++++|..+...+..+.. +. ...+.+.|-. .++
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~-----~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKER-----GYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCC-----T-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhh-----CceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHH
Confidence 45566666554433 332 234455677777542 245554444433122222221 11 1256666654 688
Q ss_pred HHHHHhcchheecCChhhHHHHHHhCCCEEEecC
Q 012492 339 EKWMGACDCIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 339 ~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
..+++.||++|+.-.| .+-=|.++|+|+|+.-.
T Consensus 178 ~ali~~a~~~I~~Dtg-~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 178 AALISRADLVIGNDTG-PMHLAAALGTPTVALFG 210 (247)
T ss_dssp HHHHHTSSEEEEESSH-HHHHHHHTT--EEEEES
T ss_pred HHHHhcCCEEEecCCh-HHHHHHHHhCCEEEEec
Confidence 8999999999997654 34668999999999854
No 176
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=96.32 E-value=1.5 Score=44.84 Aligned_cols=275 Identities=15% Similarity=0.127 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC------Cccc---c--cCCCcEE
Q 012492 148 MAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC------HPTW---F--HPRVNRC 216 (462)
Q Consensus 148 ~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~------~~~~---~--~~~~d~~ 216 (462)
.+..++.++.+..+.. |+|-++.......|. +.|.++ ++.++..++|-..+. .|.+ + --.+|.+
T Consensus 133 vN~~FAd~i~~~~~~g--DiIWVhDYhL~L~P~-mlR~~~--~~~~IgfFlHiPfPssEvfr~lP~r~eIl~gll~~dli 207 (486)
T COG0380 133 VNRKFADKIVEIYEPG--DIIWVHDYHLLLVPQ-MLRERI--PDAKIGFFLHIPFPSSEVFRCLPWREEILEGLLGADLI 207 (486)
T ss_pred HHHHHHHHHHHhcCCC--CEEEEEechhhhhHH-HHHHhC--CCceEEEEEeCCCCCHHHHhhCchHHHHHHHhhcCCee
Confidence 4556666654444333 666666555444443 344433 344444455533211 1111 0 1235666
Q ss_pred EEcCHHHHHHHHH----c-C------CC-----C--CcEEEcCCCCChhhhcccC-------ChHHHHHHcCCCCCCcEE
Q 012492 217 YCPSKEVAKRASY----F-G------LE-----V--SQIRVFGLPIRPSFVRAVI-------SKDNLRLELQMDPILPAV 271 (462)
Q Consensus 217 i~~s~~~~~~l~~----~-g------i~-----~--~~i~v~g~pv~~~~~~~~~-------~~~~~r~~l~l~~~~~~i 271 (462)
-..++..++-+.. . + +. . .++..++.++++..+.... .-.++++.++- ++.++
T Consensus 208 gFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~--~~kii 285 (486)
T COG0380 208 GFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGR--NKKLI 285 (486)
T ss_pred EecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcC--CceEE
Confidence 5666655554422 1 1 10 1 2345566677775443211 12345555532 24433
Q ss_pred EEEeCCCCCccHHHHHHHHHHhhhcccCCCCCc----eEEEEccCCH----H---HHHHHhhc-----------cCCCCe
Q 012492 272 LLMGGGEGMGPVKETAMALGESLLDKETGRPIG----QLIIICGRNR----T---LASTLQSE-----------EWKIPV 329 (462)
Q Consensus 272 Lv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~----~~lvv~G~~~----~---l~~~~~~~-----------~~~~~V 329 (462)
+-+-+..-.+++.+-+.++-+.|.+ +|++ .++.++-... + ++..++++ ++ ..|
T Consensus 286 vgvDRlDy~kGi~~rl~Afe~lL~~----~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~-~Pv 360 (486)
T COG0380 286 VGVDRLDYSKGIPQRLLAFERLLEE----YPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSW-TPV 360 (486)
T ss_pred EEehhcccccCcHHHHHHHHHHHHh----ChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCc-cee
Confidence 3333334456677666666444433 4543 3344442221 1 23333321 12 345
Q ss_pred EEecc-c--hhHHHHHHhcchheecC---C-hhhHHHHHHhCC----CEEEecCCCCccccchHHHHHCCceeeeC--CH
Q 012492 330 KVRGF-E--TQMEKWMGACDCIITKA---G-PGTIAEALIRGL----PIILNDYIPGQEKGNVPYVVDNGAGVFTR--SP 396 (462)
Q Consensus 330 ~~~g~-~--~~~~~l~~~aD~vV~~s---g-~~t~~EAla~G~----PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~ 396 (462)
.++-- . +++..+|..||+.+.+| | -.+..|..+|.- |.|++.+.+ .+..|. + +++++ |.
T Consensus 361 ~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaG-----aa~~L~--~-AliVNP~d~ 432 (486)
T COG0380 361 HYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAG-----AASELR--D-ALIVNPWDT 432 (486)
T ss_pred EEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEecccc-----chhhhc--c-CEeECCCCh
Confidence 54433 2 57889999999977655 3 556788888755 566665532 333442 3 55555 68
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 012492 397 KETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 397 ~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~ 442 (462)
++++++|.+.|...++.+++--+...+....+.+.+.++.+++-+.
T Consensus 433 ~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la 478 (486)
T COG0380 433 KEVADAIKRALTMSLEERKERHEKLLKQVLTHDVARWANSFLDDLA 478 (486)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999977777776666666666666666666666554443
No 177
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=95.57 E-value=1.8 Score=41.67 Aligned_cols=167 Identities=8% Similarity=-0.046 Sum_probs=87.5
Q ss_pred CCCeEEEEecCCCCCCc---c----cccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHc
Q 012492 190 KKVIFVTVITDLNTCHP---T----WFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLEL 262 (462)
Q Consensus 190 ~~iP~v~~~~d~~~~~~---~----~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l 262 (462)
.+.|++.+-....+... + +..+.+|.+.+-.+...+.+.+.|+ ++.+.+-++ +.-.......
T Consensus 98 ~~k~~~~~g~giGP~~~~~~r~~~~~~l~~~~~i~vRD~~S~~~l~~~g~---~i~~~~D~a---~~l~~~~~~~----- 166 (298)
T TIGR03609 98 FGKPVILWGQGIGPLRRRLSRWLVRRVLRGCRAISVRDAASYRLLKRLGI---PAELAADPV---WLLPPEPWPG----- 166 (298)
T ss_pred cCCCEEEEecccCCcCCHHHHHHHHHHHccCCEEEEeCHHHHHHHHHhCC---CceEeCChh---hhCCCCcccc-----
Confidence 47888777665543221 1 2346678888888888888777787 366655332 2211011000
Q ss_pred CCCCCCcEEEEEeCCCCC--ccHHHHHHHHHHhhhcccCCCCCceEEEEcc--CCH-HHHHHHhh-ccCCCCeEEeccch
Q 012492 263 QMDPILPAVLLMGGGEGM--GPVKETAMALGESLLDKETGRPIGQLIIICG--RNR-TLASTLQS-EEWKIPVKVRGFET 336 (462)
Q Consensus 263 ~l~~~~~~iLv~gG~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G--~~~-~l~~~~~~-~~~~~~V~~~g~~~ 336 (462)
....+++.+.+..+.... ....+.+..+++.+.++ .+.+++++.. ..+ +..+.+.+ +.....+......+
T Consensus 167 ~~~~~~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~----~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~ 242 (298)
T TIGR03609 167 GEPLPEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRD----TGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPE 242 (298)
T ss_pred cccCCCCeEEEEECCCCcCCHHHHHHHHHHHHHHHHh----hCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHH
Confidence 011234567776655322 11222223333444331 2344444332 222 22233322 11122232112235
Q ss_pred hHHHHHHhcchheecCChhhHHHHHHhCCCEEEecC
Q 012492 337 QMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 337 ~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
++..+++.||++|+..- ..++=|+.+|+|+|...+
T Consensus 243 e~~~~i~~~~~vI~~Rl-H~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 243 ELLGLFASARLVIGMRL-HALILAAAAGVPFVALSY 277 (298)
T ss_pred HHHHHHhhCCEEEEech-HHHHHHHHcCCCEEEeec
Confidence 78889999999999655 456889999999998865
No 178
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=95.31 E-value=0.49 Score=42.10 Aligned_cols=162 Identities=15% Similarity=0.053 Sum_probs=79.9
Q ss_pred CCeEEEEec----C-CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCC
Q 012492 62 TKNVLILMS----D-TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTS 136 (462)
Q Consensus 62 ~~kIli~~~----~-~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 136 (462)
|+||+|++. + -| |-++.+..|+..|.++|+ .+.|++..-. .+. . +..|+. ..+.......
T Consensus 1 mkkIaIiGtrGIPa~YG-GfET~ve~L~~~l~~~g~-~v~Vyc~~~~---~~~--~--~~~y~g----v~l~~i~~~~-- 65 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYG-GFETFVEELAPRLVSKGI-DVTVYCRSDY---YPY--K--EFEYNG----VRLVYIPAPK-- 65 (185)
T ss_pred CceEEEEeCCCCCcccC-cHHHHHHHHHHHHhcCCc-eEEEEEccCC---CCC--C--CcccCC----eEEEEeCCCC--
Confidence 689999972 2 55 999999999999998875 3455543211 110 0 111211 0111111111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh--hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccc------
Q 012492 137 PKWIHSCYLAAMAAYYAKEVEAGLME--YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTW------ 208 (462)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~l~~--~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~------ 208 (462)
.+.+.++...+.+...+ ..+.+. .+.|+|+..+.......+...+.... .+.|+++-.+...=.-..|
T Consensus 66 ~g~~~si~yd~~sl~~a---l~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~-~g~~v~vN~DGlEWkR~KW~~~~k~ 141 (185)
T PF09314_consen 66 NGSAESIIYDFLSLLHA---LRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRK-KGGKVVVNMDGLEWKRAKWGRPAKK 141 (185)
T ss_pred CCchHHHHHHHHHHHHH---HHHHhhccccCCEEEEEcCCccHHHHHHHHhhhh-cCCcEEECCCcchhhhhhcCHHHHH
Confidence 11233333322222222 122333 36788876664422222333333211 2568775444322011122
Q ss_pred --------ccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCC
Q 012492 209 --------FHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLP 243 (462)
Q Consensus 209 --------~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~p 243 (462)
..+.+|.+++-|+...+.+.+..- ..+..+++++
T Consensus 142 ~lk~~E~~avk~ad~lIaDs~~I~~y~~~~y~-~~~s~~IaYG 183 (185)
T PF09314_consen 142 YLKFSEKLAVKYADRLIADSKGIQDYIKERYG-RKKSTFIAYG 183 (185)
T ss_pred HHHHHHHHHHHhCCEEEEcCHHHHHHHHHHcC-CCCcEEecCC
Confidence 125689999999999888875421 3345555544
No 179
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=95.27 E-value=0.15 Score=48.44 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=36.3
Q ss_pred CCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecC
Q 012492 326 KIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 326 ~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
..++.+....-++.+++..||.+|+-.+ .+-+||+.+|+||++...
T Consensus 181 ~~~~~~~~~~~~~~~Ll~~s~~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 181 LPNVVIIDDDVNLYELLEQSDAVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred CCCeEEECCCCCHHHHHHhCCEEEEECC-HHHHHHHHcCCceEEecC
Confidence 3456665555578999999999998554 467999999999999764
No 180
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=95.10 E-value=2.8 Score=39.10 Aligned_cols=171 Identities=13% Similarity=0.100 Sum_probs=85.0
Q ss_pred CCCeEEEEecCCCCCCc-------ccccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHc
Q 012492 190 KKVIFVTVITDLNTCHP-------TWFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLEL 262 (462)
Q Consensus 190 ~~iP~v~~~~d~~~~~~-------~~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l 262 (462)
.++|++.+-....+... ..+.+.++.+.+-.+...+.+.+.|++. ++.+++-+. |...+..+......
T Consensus 98 ~~~pv~~~g~g~gp~~~~~~~~~~~~~l~~~~~i~vRD~~S~~~l~~~g~~~-~~~~~~D~a---f~l~~~~~~~~~~~- 172 (286)
T PF04230_consen 98 LGKPVIILGQGIGPFRSEEFKKLLRRILSKADYISVRDEYSYELLKKLGISG-NVKLVPDPA---FLLPPSYPDEDKSK- 172 (286)
T ss_pred cCCCeEEECceECccCCHHHHHHHHHHHhCCCEEEECCHHHHHHHHHcCCCC-CcEEEeCch---hhcCcccccccccc-
Confidence 48898876554421111 1223457888888888887777788876 777777554 21111111110000
Q ss_pred CCCCCCcEEEEEeCCC-CCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH-HHHHHHhh----ccCCCCeEEecc--
Q 012492 263 QMDPILPAVLLMGGGE-GMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR-TLASTLQS----EEWKIPVKVRGF-- 334 (462)
Q Consensus 263 ~l~~~~~~iLv~gG~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-~l~~~~~~----~~~~~~V~~~g~-- 334 (462)
.....+.+..... ......+.+..+.+.+.+. .....++....... ........ .....++.....
T Consensus 173 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (286)
T PF04230_consen 173 ---PKRNYISVSNSPSRNNEEYIEEIAELIQRLLDK---GYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSL 246 (286)
T ss_pred ---cccceeeeccccchhhhhHHHHHHHHHHHhhcc---cceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCC
Confidence 0111122211111 1222333333333443331 11223333333222 11111110 222233333322
Q ss_pred -chhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecC
Q 012492 335 -ETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 335 -~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
..++.++++.||++|+..-. .++=|+++|+|+|....
T Consensus 247 ~~~~~~~~~~~~~~~Is~RlH-~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 247 SPDELLELISQADLVISMRLH-GAILALSLGVPVIAISY 284 (286)
T ss_pred CHHHHHHHHhcCCEEEecCCH-HHHHHHHcCCCEEEEec
Confidence 36888999999999997664 45779999999999864
No 181
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=94.75 E-value=0.048 Score=45.99 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=26.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 65 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 65 Ili~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
|+|.+.++ .||..+..+|+++|+++|| +|.+.
T Consensus 1 Ili~~~Gt-~Ghv~P~lala~~L~~rGh---~V~~~ 32 (139)
T PF03033_consen 1 ILIATGGT-RGHVYPFLALARALRRRGH---EVRLA 32 (139)
T ss_dssp EEEEEESS-HHHHHHHHHHHHHHHHTT----EEEEE
T ss_pred CEEEEcCC-hhHHHHHHHHHHHHhccCC---eEEEe
Confidence 78999999 5999999999999999997 55444
No 182
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=94.74 E-value=4.9 Score=39.90 Aligned_cols=212 Identities=13% Similarity=0.084 Sum_probs=107.4
Q ss_pred CCCeEEEEecCCCC-CCc--ccc----cCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHc
Q 012492 190 KKVIFVTVITDLNT-CHP--TWF----HPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLEL 262 (462)
Q Consensus 190 ~~iP~v~~~~d~~~-~~~--~~~----~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l 262 (462)
.+.|++.+-+...+ .|+ +|+ .+.+..+.+-.+...+.+...|++.. .+. ++.|.-+...++.-.. .
T Consensus 123 ~~kp~~~~g~svGP~~~~~s~~~~~~~~~~~s~i~vRD~~S~~llk~~gi~a~--l~~----D~Af~L~~~~~~~~~~-~ 195 (385)
T COG2327 123 AGKPTFFFGQSVGPLKHPLSRQLLNYVLGGCSAISVRDPVSYELLKQLGINAR--LVT----DPAFLLPASSQNATAS-D 195 (385)
T ss_pred cCCCEEEEeccCCCccCHHHHHHHHHHhcCCcEEEEecHHhHHHHHHcCCCeE--eec----Ccceeccccccccccc-c
Confidence 37898887766543 222 232 34567788888888888887788632 222 3333321111110000 0
Q ss_pred CCCCCCcEEEEEeCCCCCcc-----HHHHHHHHHHhhhcccCCCCCceEEEEccCCHH---HHHHHhhc-cCCCCeEEec
Q 012492 263 QMDPILPAVLLMGGGEGMGP-----VKETAMALGESLLDKETGRPIGQLIIICGRNRT---LASTLQSE-EWKIPVKVRG 333 (462)
Q Consensus 263 ~l~~~~~~iLv~gG~~~~~~-----~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~---l~~~~~~~-~~~~~V~~~g 333 (462)
+ ....+.+.++...+...+ +.+.+.++++.+... ....+.+..+.+...+ ..+.+..+ ....++.+..
T Consensus 196 ~-~~~~~~~~i~lr~~~~~~t~~~~~~~~v~~~l~~~~~~--~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~ 272 (385)
T COG2327 196 V-EAREKTVAITLRGLHPDNTAQRSILKYVNEALDLVERQ--VKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSS 272 (385)
T ss_pred c-ccccceEEEEecccCCchhhhHHHHHHHHHHHHHHHHh--hhcceEEEeeeccccchhHHHHHHHhhcCCccceEeec
Confidence 1 122345666554432211 112223333322111 1234443333333221 22222222 1124555542
Q ss_pred --cchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCce-eeeC----CHHHHHHHHHHH
Q 012492 334 --FETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAG-VFTR----SPKETARIVTEW 406 (462)
Q Consensus 334 --~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g-~~~~----~~~~la~~i~~l 406 (462)
+.+++...++.||++|.. ...+++=|+++|+|+|...+.+ .....+.+.|.. +..+ +.+.+...+.+.
T Consensus 273 d~~~~~~~~~l~~~dl~Vg~-R~HsaI~al~~g~p~i~i~Y~~----K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~ 347 (385)
T COG2327 273 DEYAEELGGILAACDLIVGM-RLHSAIMALAFGVPAIAIAYDP----KVRGLMQDLGLPGFAIDIDPLDAEILSAVVLER 347 (385)
T ss_pred chHHHHHHHHhccCceEEee-hhHHHHHHHhcCCCeEEEeecH----HHHHHHHHcCCCcccccCCCCchHHHHHHHHHH
Confidence 224566788999999984 4456788999999999998743 233455556653 3222 456666666666
Q ss_pred hcCCHHHHHH
Q 012492 407 FSTKTDELKR 416 (462)
Q Consensus 407 l~~d~~~~~~ 416 (462)
+.++++.+++
T Consensus 348 ~~~~~~~~~~ 357 (385)
T COG2327 348 LTKLDELRER 357 (385)
T ss_pred HhccHHHHhh
Confidence 6466776554
No 183
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=94.35 E-value=2.4 Score=45.16 Aligned_cols=170 Identities=10% Similarity=0.058 Sum_probs=97.8
Q ss_pred CCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccC-CCCCceEEEEccCCH-------HHHHHHhhc----cCCCCeEE
Q 012492 264 MDPILPAVLLMGGGEGMGPVKETAMALGESLLDKET-GRPIGQLIIICGRNR-------TLASTLQSE----EWKIPVKV 331 (462)
Q Consensus 264 l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~lvv~G~~~-------~l~~~~~~~----~~~~~V~~ 331 (462)
++++.+++.++.+...+| ..+++...++.+.+... ...++++ |+.|.+. ++.+.+.++ ....+|.|
T Consensus 385 ~dpd~~~ig~v~Rl~~yK-r~dLil~~i~~l~~i~~~~~~pvq~-V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f 462 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYK-RADLIFRDLERLARILNNPERPVQI-VFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVF 462 (601)
T ss_pred cCCCCcEEEEEEcchhhh-hHHHHHHHHHHHHHHhhCCCCCeEE-EEEEecCcccchHHHHHHHHHHHHhcccCCCCEEE
Confidence 456666555554444444 34444444444432100 0124665 4566653 244444433 24457776
Q ss_pred -eccchhHH-HHHHhcchhee-cCC-----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC---------
Q 012492 332 -RGFETQME-KWMGACDCIIT-KAG-----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--------- 394 (462)
Q Consensus 332 -~g~~~~~~-~l~~~aD~vV~-~sg-----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--------- 394 (462)
.+|-..+. .+++.||+++. |+. |.+=|-||..|.+.+.+-.+-..+. . +.+.|+...
T Consensus 463 ~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~-----~-~~~nGf~f~~~~~~~~~~ 536 (601)
T TIGR02094 463 LENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEG-----Y-DGDNGWAIGDGEEYDDEE 536 (601)
T ss_pred EcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCccccc-----C-CCCcEEEECCCccccccc
Confidence 47765555 57799999987 552 7778999999999998764311111 1 235566554
Q ss_pred -----CHHHHHHHHHHHh----cCC-----HHHHHHHHHHHHh-hcCCcHHHHHHHHHHHHH
Q 012492 395 -----SPKETARIVTEWF----STK-----TDELKRMSENALK-LAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 395 -----~~~~la~~i~~ll----~~d-----~~~~~~m~~~a~~-~~~~~~~~~ia~~i~~l~ 441 (462)
+.+++.++|++.+ .++ |+...+|.+++-+ .+..++|.+.++...++.
T Consensus 537 ~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 537 EQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 4566666665433 122 4456667666654 355799999999887753
No 184
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=94.00 E-value=2.6 Score=39.09 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCCEEE-ECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 153 AKEVEAGLMEYKPDIII-SVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi-~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
...|.+++++++.|++| .+||+...+.-.+++.... .+||.+.+.
T Consensus 55 ~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake-~gipy~r~e 100 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKE-TGIPYLRLE 100 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHH-hCCcEEEEE
Confidence 44667889999999998 6778866553333322111 489998754
No 185
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=93.39 E-value=5.8 Score=37.36 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=27.5
Q ss_pred HHHHHHhhCCCEEE-ECCcccchHHHHHHHHcCCCCCCeEEEEec
Q 012492 156 VEAGLMEYKPDIII-SVHPLMQHIPLWVLKWQGLQKKVIFVTVIT 199 (462)
Q Consensus 156 l~~~l~~~kPDvVi-~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~ 199 (462)
+.+++++.++|+|| .+||+...+.-.+.+... ..++|++-+.-
T Consensus 57 l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~-~~~ipylR~eR 100 (256)
T TIGR00715 57 LREFLKRHSIDILVDATHPFAAQITTNATAVCK-ELGIPYVRFER 100 (256)
T ss_pred HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHH-HhCCcEEEEEC
Confidence 56789999999887 677876554322222111 15899987653
No 186
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=90.41 E-value=9.7 Score=33.69 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=30.1
Q ss_pred eEEeccchhHHHHHHhcchhee-cCChhhHHHH---HH------hCCCEEEecCC
Q 012492 329 VKVRGFETQMEKWMGACDCIIT-KAGPGTIAEA---LI------RGLPIILNDYI 373 (462)
Q Consensus 329 V~~~g~~~~~~~l~~~aD~vV~-~sg~~t~~EA---la------~G~PvI~~~~~ 373 (462)
+.+..+.+....++..||++|. ++|.+|+-|. +. ..+|+++.+..
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~ 135 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVN 135 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCc
Confidence 3343444455578889999775 5557787664 33 29999998753
No 187
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=89.05 E-value=16 Score=40.17 Aligned_cols=170 Identities=11% Similarity=0.043 Sum_probs=90.3
Q ss_pred CCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccC-CCCCceEEEEccCCH-------HHHHHHhhc----cCCCCeEE
Q 012492 264 MDPILPAVLLMGGGEGMGPVKETAMALGESLLDKET-GRPIGQLIIICGRNR-------TLASTLQSE----EWKIPVKV 331 (462)
Q Consensus 264 l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~lvv~G~~~-------~l~~~~~~~----~~~~~V~~ 331 (462)
++++.+++. +.++....+..+++....+.+.+..+ ...++++ |+.|+.. ++.+.+.++ ....+|.|
T Consensus 474 ldpd~ltig-farRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~-IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvf 551 (778)
T cd04299 474 LDPNVLTIG-FARRFATYKRATLLLRDPERLKRLLNDPERPVQF-IFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVF 551 (778)
T ss_pred cCCCccEEe-eeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEE-EEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEE
Confidence 345544443 34455443434443333333322110 0123665 4567653 233444332 33457776
Q ss_pred e-ccchhHH-HHHHhcchheecCC------hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCC--------
Q 012492 332 R-GFETQME-KWMGACDCIITKAG------PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRS-------- 395 (462)
Q Consensus 332 ~-g~~~~~~-~l~~~aD~vV~~sg------~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~-------- 395 (462)
+ +|-..+. .+++.||+.+.+|. |.+=|-|+..|.+-+.+-.+--.+. -+.+.|+.+.+
T Consensus 552 le~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~------~~g~nGwaig~~~~~~~~~ 625 (778)
T cd04299 552 LEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEG------YDGENGWAIGDGDEYEDDE 625 (778)
T ss_pred EcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccc------cCCCCceEeCCCccccChh
Confidence 4 6655555 57789999987653 6677899999999998775311111 01234554432
Q ss_pred ------HHHHHHHHHH----HhcC-----CHHHHHHHHHHH-HhhcCCcHHHHHHHHHHHHH
Q 012492 396 ------PKETARIVTE----WFST-----KTDELKRMSENA-LKLAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 396 ------~~~la~~i~~----ll~~-----d~~~~~~m~~~a-~~~~~~~~~~~ia~~i~~l~ 441 (462)
.+++-+.++. +.-+ .|....+|.+++ ...+..+++.++++...+-+
T Consensus 626 ~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 626 YQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred hcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 3333344432 2212 255565666555 44566789998888876633
No 188
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=86.45 E-value=13 Score=35.10 Aligned_cols=96 Identities=19% Similarity=0.171 Sum_probs=55.9
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcch
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW 139 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 139 (462)
+..++|+|+=+|+| | +.+.+++.++-|+...+|+.|... .||..+.-+.
T Consensus 3 ~~~~~IgvFDSGVG-G-----LsVlrei~~~LP~e~~iY~~D~a~--~PYG~ks~e~----------------------- 51 (269)
T COG0796 3 EPQPPIGVFDSGVG-G-----LSVLREIRRQLPDEDIIYVGDTAR--FPYGEKSEEE----------------------- 51 (269)
T ss_pred ccCCeEEEEECCCC-c-----HHHHHHHHHHCCCCcEEEEecCCC--CCCCCCCHHH-----------------------
Confidence 34578999999996 4 345566666666666888887431 1222111000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 140 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
-..+..++...+.+..++++|.-....+..++-.+|.+ .++|+|.++
T Consensus 52 ---------I~~~~~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~---~~iPVvGvi 98 (269)
T COG0796 52 ---------IRERTLEIVDFLLERGIKALVIACNTASAVALEDLREK---FDIPVVGVI 98 (269)
T ss_pred ---------HHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHh---CCCCEEEec
Confidence 01223344555666669988755444444444455543 489999876
No 189
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=86.41 E-value=2.2 Score=39.14 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=23.2
Q ss_pred CCeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 62 TKNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 62 ~~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
|||||+++ ...|+--..++..+++.|...
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~~ 30 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDGR 30 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhcccc
Confidence 68999998 558755688899999999754
No 190
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=85.24 E-value=6 Score=35.06 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=21.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCC
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGD 93 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~ 93 (462)
|||+|++++.| ..+..+.+++.+.++.
T Consensus 1 mrI~~~~Sg~~----~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSGSG----SFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESSSS----HHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcCCC----HHHHHHHHHHHhCCCC
Confidence 79999998885 5556678899888754
No 191
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=84.95 E-value=36 Score=34.41 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=40.2
Q ss_pred CceEEEEccCCHH-HHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC-------hhhHHHHHHhCCCEEEecCC
Q 012492 303 IGQLIIICGRNRT-LASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG-------PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 303 ~~~~lvv~G~~~~-l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg-------~~t~~EAla~G~PvI~~~~~ 373 (462)
++..+.++++..+ -.+..++++ .... ..+++..++..+|++|+.++ -..+-+++..-..+++.|..
T Consensus 201 g~~~i~IaNRT~erA~~La~~~~----~~~~-~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 201 GVKKITIANRTLERAEELAKKLG----AEAV-ALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred CCCEEEEEcCCHHHHHHHHHHhC----Ceee-cHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEec
Confidence 3456778888753 222333333 2222 23789999999999998655 22344566655566777763
No 192
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=84.48 E-value=3.1 Score=37.97 Aligned_cols=29 Identities=10% Similarity=-0.018 Sum_probs=23.1
Q ss_pred CCeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 62 TKNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 62 ~~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
|||||+++ ...|+-...++..++++|...
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 30 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGE 30 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhcccc
Confidence 78999998 457655678889999999765
No 193
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=82.16 E-value=3.5 Score=33.88 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=38.9
Q ss_pred HHHHHhcchheecCC-----hhhH---HHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHh
Q 012492 339 EKWMGACDCIITKAG-----PGTI---AEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 339 ~~l~~~aD~vV~~sg-----~~t~---~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll 407 (462)
..++..||++|.+=| -++. --|.++|+|.|+.....-+ -+..-++..+-.++.+++...+.+..++
T Consensus 67 ~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~---HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELH---HPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhcc---ccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 357777777776544 3333 3478999999998754211 1111122334455677777777766554
No 194
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=82.01 E-value=30 Score=29.94 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=26.5
Q ss_pred HHHHHhcchhee-cCChhhH---HHHHHhCCCEEEecCCC
Q 012492 339 EKWMGACDCIIT-KAGPGTI---AEALIRGLPIILNDYIP 374 (462)
Q Consensus 339 ~~l~~~aD~vV~-~sg~~t~---~EAla~G~PvI~~~~~~ 374 (462)
.-+...||++|. ++|.+|+ .|++..++|+++.+..+
T Consensus 86 ~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g 125 (159)
T TIGR00725 86 FILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTG 125 (159)
T ss_pred HHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCC
Confidence 456778998765 5555664 56889999999988654
No 195
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=80.77 E-value=5.9 Score=35.79 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhc
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g 91 (462)
||||+|++++.| +-+.+|.+++.+.+
T Consensus 1 m~ki~vl~sg~g----s~~~~ll~~~~~~~ 26 (200)
T PRK05647 1 MKRIVVLASGNG----SNLQAIIDACAAGQ 26 (200)
T ss_pred CceEEEEEcCCC----hhHHHHHHHHHcCC
Confidence 689999999886 55667888887764
No 196
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=80.59 E-value=19 Score=31.29 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=66.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
||||++.+=.||-|..-+..|++++ + + .++++.. .+ + -|.+..+..
T Consensus 1 M~ILlle~y~ggSHk~~~~~L~~~~-~--~-~~~lltL------P~---r--------------~w~WRmRg~------- 46 (168)
T PF12038_consen 1 MRILLLEPYYGGSHKQWADGLAAHS-E--H-EWTLLTL------PA---R--------------KWHWRMRGA------- 46 (168)
T ss_pred CeEEEEccccccCHHHHHHHHHHhc-c--C-CEEEEEc------CC---C--------------ccccccCCC-------
Confidence 7999998777778999888888888 2 1 2333322 11 1 122111110
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccc-------------
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWF------------- 209 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~------------- 209 (462)
+..++ .+.......|+|++++-..-. .+....- . ..++|.+.+.|+-...+|..-
T Consensus 47 ------AL~~a---~~~~~~~~~dll~aTsmldLa-~l~gL~p-~-l~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni 114 (168)
T PF12038_consen 47 ------ALYFA---QQIPLSHSYDLLFATSMLDLA-TLRGLRP-D-LANVPKILYFHENQLAYPVSPGQERDFQYGMNNI 114 (168)
T ss_pred ------HHHHh---hccccccCCCEEEeeccccHH-HHHhhcc-C-CCCCCEEEEEecCcccCCCCCCccccccHHHHHH
Confidence 11222 234667778999988744211 1222221 1 148999999887432222110
Q ss_pred --cCCCcEEEEcCHHHHHHHHH
Q 012492 210 --HPRVNRCYCPSKEVAKRASY 229 (462)
Q Consensus 210 --~~~~d~~i~~s~~~~~~l~~ 229 (462)
.--+|+++..|..-++.+.+
T Consensus 115 ~saLaAD~v~FNS~~nr~sFL~ 136 (168)
T PF12038_consen 115 YSALAADRVVFNSAFNRDSFLD 136 (168)
T ss_pred HHHHhceeeeecchhhHHHHHH
Confidence 11357888888777766643
No 197
>PRK06849 hypothetical protein; Provisional
Probab=77.36 E-value=7.8 Score=38.93 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=48.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchh
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 140 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 140 (462)
.+|+|||++++. ..++.++++|.+.|+ +|+++|..+. .... +...+ +..+.-..+..
T Consensus 3 ~~~~VLI~G~~~-----~~~l~iar~l~~~G~---~Vi~~d~~~~----~~~~----~s~~~------d~~~~~p~p~~- 59 (389)
T PRK06849 3 TKKTVLITGARA-----PAALELARLFHNAGH---TVILADSLKY----PLSR----FSRAV------DGFYTIPSPRW- 59 (389)
T ss_pred CCCEEEEeCCCc-----HHHHHHHHHHHHCCC---EEEEEeCCch----HHHH----HHHhh------hheEEeCCCCC-
Confidence 468999997666 257889999999874 7777764321 1110 10001 10010000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcc
Q 012492 141 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPL 174 (462)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~ 174 (462)
. ...+...|.++++++++|+||.....
T Consensus 60 d-------~~~~~~~L~~i~~~~~id~vIP~~e~ 86 (389)
T PRK06849 60 D-------PDAYIQALLSIVQRENIDLLIPTCEE 86 (389)
T ss_pred C-------HHHHHHHHHHHHHHcCCCEEEECChH
Confidence 0 12344567788999999999988754
No 198
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=77.09 E-value=26 Score=35.16 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=62.9
Q ss_pred hHHHHHHcC-----CCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCe
Q 012492 255 KDNLRLELQ-----MDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPV 329 (462)
Q Consensus 255 ~~~~r~~l~-----l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V 329 (462)
+..+.+++| ..++.|.|.+-+.|.|.- ..+..+.+.+.+ ++|++.+++.++.+...+..-+.++....+
T Consensus 31 ~~r~~eRfg~~~~~~~~~~p~vWiHaaSVGEv---~a~~pLv~~l~~---~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h 104 (419)
T COG1519 31 RKRLGERFGFYKPPVKPEGPLVWIHAASVGEV---LAALPLVRALRE---RFPDLRILVTTMTPTGAERAAALFGDSVIH 104 (419)
T ss_pred HHHHHHHhcccCCCCCCCCCeEEEEecchhHH---HHHHHHHHHHHH---hCCCCCEEEEecCccHHHHHHHHcCCCeEE
Confidence 444555555 224456777777777742 222334455554 468898888877664211111112222233
Q ss_pred EEeccc--hhHHHHHH--hcchhe-ecC--ChhhHHHHHHhCCCEEEecC
Q 012492 330 KVRGFE--TQMEKWMG--ACDCII-TKA--GPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 330 ~~~g~~--~~~~~l~~--~aD~vV-~~s--g~~t~~EAla~G~PvI~~~~ 372 (462)
.++++- .-+...++ ..|++| +-+ .++++.|+-..|+|+++.+.
T Consensus 105 ~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 105 QYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred EecCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 444442 23334443 445544 444 39999999999999999875
No 199
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=77.07 E-value=7.7 Score=34.12 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=22.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
.+++++-+|- ||..-.+.|-++|++...
T Consensus 39 ~~~lVvlGSG--GHT~EMlrLl~~l~~~y~ 66 (211)
T KOG3339|consen 39 LSTLVVLGSG--GHTGEMLRLLEALQDLYS 66 (211)
T ss_pred ceEEEEEcCC--CcHHHHHHHHHHHHhhcC
Confidence 3677777664 999999999999988864
No 200
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=76.19 E-value=15 Score=29.09 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=22.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
||||++.++- +-.+||..|.+. +...++++..
T Consensus 1 MkVLviGsGg------REHAia~~l~~s-~~v~~v~~aP 32 (100)
T PF02844_consen 1 MKVLVIGSGG------REHAIAWKLSQS-PSVEEVYVAP 32 (100)
T ss_dssp EEEEEEESSH------HHHHHHHHHTTC-TTEEEEEEEE
T ss_pred CEEEEECCCH------HHHHHHHHHhcC-CCCCEEEEeC
Confidence 7999987652 445789999865 3455777663
No 201
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=75.92 E-value=61 Score=29.35 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=36.9
Q ss_pred CceEEEEccCCH-HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC-----hhhHHHHHHhCCCEEEecCC
Q 012492 303 IGQLIIICGRNR-TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG-----PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 303 ~~~~lvv~G~~~-~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg-----~~t~~EAla~G~PvI~~~~~ 373 (462)
+.++.++..... ++.+..+ ..++.+..-.-+ ...+..+|++|..++ -....+|-..|+|+-+.+.+
T Consensus 32 ga~VtVvsp~~~~~l~~l~~----~~~i~~~~~~~~-~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 32 GAQLRVIAEELESELTLLAE----QGGITWLARCFD-ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred CCEEEEEcCCCCHHHHHHHH----cCCEEEEeCCCC-HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCc
Confidence 345555554432 3333222 236766432211 356788999887665 23345667789999776654
No 202
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=75.18 E-value=32 Score=32.21 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCEEE-ECCcccchHHHHHHHHcCCCCCCeEEEEec
Q 012492 154 KEVEAGLMEYKPDIII-SVHPLMQHIPLWVLKWQGLQKKVIFVTVIT 199 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi-~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~ 199 (462)
..|.++++++++++|| .+||+...+.-.+.+.. ...++|++-+.-
T Consensus 55 ~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac-~~~~ipyiR~eR 100 (248)
T PRK08057 55 EGLAAYLREEGIDLVIDATHPYAAQISANAAAAC-RALGIPYLRLER 100 (248)
T ss_pred HHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHH-HHhCCcEEEEeC
Confidence 3566789999999998 77898765533222211 125899987643
No 203
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=74.98 E-value=5.9 Score=32.65 Aligned_cols=65 Identities=20% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHhcchheecCC-----hhhH---HHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHh
Q 012492 340 KWMGACDCIITKAG-----PGTI---AEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 340 ~l~~~aD~vV~~sg-----~~t~---~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll 407 (462)
.++..||++|.+=| -++. --|.++|+|.|+...+..+ -+..-++..+-.++.+|+...+.+..++
T Consensus 71 ~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~---HpLKEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 71 KLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEELI---HPLKEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhcc---ccHHHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 56777777766544 2333 3468999999998754211 1111122223344566666666655543
No 204
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=74.97 E-value=10 Score=34.67 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=22.5
Q ss_pred CCeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 62 TKNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 62 ~~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
|||||+++ ...|+-...++..++++|...
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 30 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPGK 30 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHcccc
Confidence 68899998 446645678888999999664
No 205
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=73.98 E-value=23 Score=36.15 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=29.4
Q ss_pred hhHHHHHHhcchheecCChh-----------hHHHHHHhCCCEEEecCCCC
Q 012492 336 TQMEKWMGACDCIITKAGPG-----------TIAEALIRGLPIILNDYIPG 375 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg~~-----------t~~EAla~G~PvI~~~~~~~ 375 (462)
.++.+.++.||++|.-+|+. -++-|..+|+|+++....-|
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiG 159 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVG 159 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCC
Confidence 35567899999999866521 13457889999999987633
No 206
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.51 E-value=8.1 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=25.7
Q ss_pred hHHHHHHhcchheecCC-------hhhHHHHHHhCCCEEEecC
Q 012492 337 QMEKWMGACDCIITKAG-------PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 337 ~~~~l~~~aD~vV~~sg-------~~t~~EAla~G~PvI~~~~ 372 (462)
.++..+..||++|...+ -.+--+|-..|+|++....
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 37788889999876543 2233457778999999863
No 207
>PRK13768 GTPase; Provisional
Probab=72.01 E-value=57 Score=30.59 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
||++.++.+..|.|-.+.+.+++.+|..+|. .+.++|
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~---~v~~i~ 37 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGY---DVAIVN 37 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCC---ceEEEE
Confidence 5677777777889999999999999998764 445544
No 208
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=71.98 E-value=11 Score=29.42 Aligned_cols=67 Identities=6% Similarity=0.242 Sum_probs=39.4
Q ss_pred eEEEEccCCHH-------HHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHH-HHHhCCCEEEecC
Q 012492 305 QLIIICGRNRT-------LASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAE-ALIRGLPIILNDY 372 (462)
Q Consensus 305 ~~lvv~G~~~~-------l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~E-Ala~G~PvI~~~~ 372 (462)
+++++||.+-. +.+.+++.+++-.+.-.+. .++......+|++++.+. -..+-+ +-..|+|+.+++.
T Consensus 5 ~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~-~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 5 NILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSY-GAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecH-HHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeCh
Confidence 67788888742 3344444455433333333 456677788899888664 111222 2334789999875
No 209
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=71.79 E-value=45 Score=33.16 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=65.8
Q ss_pred hHHHHHHcCCC---CCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH-HHHHHh----hc---
Q 012492 255 KDNLRLELQMD---PILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT-LASTLQ----SE--- 323 (462)
Q Consensus 255 ~~~~r~~l~l~---~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~-l~~~~~----~~--- 323 (462)
+....+.+|++ ++...|.+++ .....+..++.. +.+. ...+.+++-.|.... +...+. ..
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~--Ye~~~l~~ll~~----~~~~---~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~ 238 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFC--YENAALASLLDA----WAAS---PKPVHLLVPEGRALNSLAAWLGDALLQAGDS 238 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEe--CCchHHHHHHHH----HhcC---CCCeEEEecCCccHHHHHHHhccccccCccc
Confidence 45667788885 4455555553 222224444443 3321 123556665565532 322222 00
Q ss_pred --cCCCCeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 324 --EWKIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 324 --~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
...-.+++++|+ ++..+++.+||+-+.++. -+..-|.-+|+|.|=-.++
T Consensus 239 ~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGE-DSfVRAqwAgkPFvWhIYp 291 (374)
T PF10093_consen 239 WQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRGE-DSFVRAQWAGKPFVWHIYP 291 (374)
T ss_pred cccCCeEEEECCCCCHHHHHHHHHhCccceEecc-hHHHHHHHhCCCceEecCc
Confidence 122346778997 789999999999888755 5689999999999987664
No 210
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=71.56 E-value=7.9 Score=37.70 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
|||||+++.+.+ + +++++|++.+. ++.++++|..
T Consensus 1 ~~~vLv~g~~~~--~-----~~~~~l~~~~~-g~~vi~~d~~ 34 (326)
T PRK12767 1 MMNILVTSAGRR--V-----QLVKALKKSLL-KGRVIGADIS 34 (326)
T ss_pred CceEEEecCCcc--H-----HHHHHHHHhcc-CCEEEEECCC
Confidence 789999998763 3 67888988752 3577877654
No 211
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=71.54 E-value=15 Score=33.98 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=37.9
Q ss_pred HHHHHHHhhC-----CCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHH
Q 012492 155 EVEAGLMEYK-----PDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVA 224 (462)
Q Consensus 155 ~l~~~l~~~k-----PDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~ 224 (462)
+|.+.+--.+ ||++++..|....++..-|+. .+||+|.++ |.+ +. ...+|.++-.+....
T Consensus 142 kL~k~lgGIk~m~~~Pd~l~ViDp~~e~iAv~EA~k----lgIPVvAlv-DTn-~d----pd~VD~~IP~Ndda~ 206 (252)
T COG0052 142 KLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANK----LGIPVVALV-DTN-CD----PDGVDYVIPGNDDAI 206 (252)
T ss_pred HHHHhhcchhhccCCCCEEEEeCCcHhHHHHHHHHH----cCCCEEEEe-cCC-CC----CccCceeecCCChHH
Confidence 4444454445 999999999888776666664 589999765 322 11 235677665554443
No 212
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=71.45 E-value=19 Score=34.38 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCEEEECCcccch----------------HHHHHHHHcCCCCCCeEEEEecCCC
Q 012492 156 VEAGLMEYKPDIIISVHPLMQH----------------IPLWVLKWQGLQKKVIFVTVITDLN 202 (462)
Q Consensus 156 l~~~l~~~kPDvVi~~~~~~~~----------------~~~~~~~~~~~~~~iP~v~~~~d~~ 202 (462)
+.+.+++.+||+||..-.+.+. .+..+++... ..+.++|.+.||+.
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~-~~ga~lVhiSTDyV 103 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAA-EVGARLVHISTDYV 103 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHH-HhCCeEEEeecceE
Confidence 4567899999999987643211 1122222211 14889998888874
No 213
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=71.05 E-value=16 Score=30.58 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=28.2
Q ss_pred EEeccchhHHHHHHhcchhee-cCChhhHHHHHHh---------CC-CEEEecCC
Q 012492 330 KVRGFETQMEKWMGACDCIIT-KAGPGTIAEALIR---------GL-PIILNDYI 373 (462)
Q Consensus 330 ~~~g~~~~~~~l~~~aD~vV~-~sg~~t~~EAla~---------G~-PvI~~~~~ 373 (462)
.+..+.+....++..||++|. ++|.+|+-|.... .+ |+|+.+..
T Consensus 39 ~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~ 93 (133)
T PF03641_consen 39 IVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNID 93 (133)
T ss_dssp EESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECG
T ss_pred EeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCc
Confidence 333444555678889998764 5667887664332 34 99998854
No 214
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=70.20 E-value=21 Score=31.82 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHc
Q 012492 152 YAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQ 186 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~ 186 (462)
+-..|.+.+++.+||+|+.-+.+--..+..+.++.
T Consensus 67 ~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~ 101 (200)
T COG0299 67 FDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFE 101 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhh
Confidence 45577889999999999988754322233445543
No 215
>PRK00865 glutamate racemase; Provisional
Probab=69.80 E-value=76 Score=29.91 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=51.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhhH
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 142 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 142 (462)
++|.|+=+|.| | +.+.++++++.|+...+|+.|... .||..+.-+..
T Consensus 6 ~~IgvfDSGiG-G-----Ltvl~~i~~~lp~~~~iY~~D~~~--~PYG~ks~~~i------------------------- 52 (261)
T PRK00865 6 APIGVFDSGVG-G-----LTVLREIRRLLPDEHIIYVGDTAR--FPYGEKSEEEI------------------------- 52 (261)
T ss_pred CeEEEEECCcc-H-----HHHHHHHHHHCCCCCEEEEecCCC--CCCCCCCHHHH-------------------------
Confidence 57999999996 4 445577777767666778887531 23332221110
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEE
Q 012492 143 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVT 196 (462)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~ 196 (462)
..+..++.+.+.+.++|.|+.-........+-..+.. .++|++.
T Consensus 53 -------~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~---~~iPvig 96 (261)
T PRK00865 53 -------RERTLEIVEFLLEYGVKMLVIACNTASAVALPDLRER---YDIPVVG 96 (261)
T ss_pred -------HHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHh---CCCCEEe
Confidence 1223344566778899988754433222112233332 4799877
No 216
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=69.43 E-value=14 Score=29.23 Aligned_cols=66 Identities=8% Similarity=0.113 Sum_probs=39.8
Q ss_pred eEEEEccCCH-------HHHHHHhhccCCCCeEEecc-chhHHHHHHhcchheecCC----hhhHHH-HHHhCCCEEEec
Q 012492 305 QLIIICGRNR-------TLASTLQSEEWKIPVKVRGF-ETQMEKWMGACDCIITKAG----PGTIAE-ALIRGLPIILND 371 (462)
Q Consensus 305 ~~lvv~G~~~-------~l~~~~~~~~~~~~V~~~g~-~~~~~~l~~~aD~vV~~sg----~~t~~E-Ala~G~PvI~~~ 371 (462)
+++++||.+. ++++..++.+++ +.+... ..++...+..+|+++..+. -..+-| +-..|+|+.+++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~--~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP--LEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc--EEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 4667787764 133444444543 433322 3577788889998887664 122333 445689999987
Q ss_pred C
Q 012492 372 Y 372 (462)
Q Consensus 372 ~ 372 (462)
.
T Consensus 80 ~ 80 (99)
T cd05565 80 G 80 (99)
T ss_pred H
Confidence 4
No 217
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=68.73 E-value=18 Score=32.93 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=21.6
Q ss_pred CeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 63 KNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 63 ~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
||||+++ ...|+--..++..+++.|...
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~~ 29 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNGS 29 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhcc
Confidence 6899998 457645678888999999764
No 218
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=68.27 E-value=11 Score=35.27 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHh--hCCCEEEECCcccchHHHHHHHHcC----CCCCCeEEEEecCC
Q 012492 151 YYAKEVEAGLME--YKPDIIISVHPLMQHIPLWVLKWQG----LQKKVIFVTVITDL 201 (462)
Q Consensus 151 ~~~~~l~~~l~~--~kPDvVi~~~~~~~~~~~~~~~~~~----~~~~iP~v~~~~d~ 201 (462)
.+.+...+++++ ++|||||++.-..+.+++.+ |... ...++|+|..+|..
T Consensus 118 ~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~l-k~~~~~~~~~~~~~~v~TIHN~ 173 (245)
T PF08323_consen 118 FFSRAALELLKKLGWKPDIIHCHDWHTALAPLYL-KERYQQDPFFANIPTVFTIHNL 173 (245)
T ss_dssp HHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHH-HHCCSS------SEEEEEESST
T ss_pred HHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHh-ccccccccccccceeEEEEccc
Confidence 345556677776 79999999876655554444 4321 11269999888864
No 219
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=68.18 E-value=11 Score=29.47 Aligned_cols=67 Identities=10% Similarity=0.347 Sum_probs=40.1
Q ss_pred EEEEccCCHH-------HHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHH-HHHhCCCEEEecCC
Q 012492 306 LIIICGRNRT-------LASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAE-ALIRGLPIILNDYI 373 (462)
Q Consensus 306 ~lvv~G~~~~-------l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~E-Ala~G~PvI~~~~~ 373 (462)
++++||.+-. +.+.+++.+++-+|.-.+. .++...+..+|++++.+. -..+-| +.-.++|+.+.|..
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~-~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPE-SELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecH-HHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChH
Confidence 5677877641 3344444455433443332 456677888999888664 222333 34578999998863
No 220
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=67.95 E-value=17 Score=32.97 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=22.0
Q ss_pred CeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 63 KNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 63 ~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
||||+++ +..|+-...++..+++.|...
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 29 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDGK 29 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhcccc
Confidence 7899998 457645678889999999765
No 221
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=67.80 E-value=31 Score=30.72 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=44.2
Q ss_pred cEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhh-ccCCCCeEEecc--chhHHHHHHhc
Q 012492 269 PAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQS-EEWKIPVKVRGF--ETQMEKWMGAC 345 (462)
Q Consensus 269 ~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~-~~~~~~V~~~g~--~~~~~~l~~~a 345 (462)
+.|.+-+.+.|. ...+..+++.+.+ .+|+.++++.+...... +..++ +.....+.+.++ ...+...+..-
T Consensus 22 ~~iWiHa~SvGE---~~a~~~Li~~l~~---~~p~~~illT~~T~tg~-~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~ 94 (186)
T PF04413_consen 22 PLIWIHAASVGE---VNAARPLIKRLRK---QRPDLRILLTTTTPTGR-EMARKLLPDRVDVQYLPLDFPWAVRRFLDHW 94 (186)
T ss_dssp T-EEEE-SSHHH---HHHHHHHHHHHTT------TS-EEEEES-CCHH-HHHHGG-GGG-SEEE---SSHHHHHHHHHHH
T ss_pred CcEEEEECCHHH---HHHHHHHHHHHHH---hCCCCeEEEEecCCchH-HHHHHhCCCCeEEEEeCccCHHHHHHHHHHh
Confidence 567776666552 2334455666665 35788877776644321 22222 122234455443 23445555544
Q ss_pred --chheecCC---hhhHHHHHHhCCCEEEecC
Q 012492 346 --DCIITKAG---PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 346 --D~vV~~sg---~~t~~EAla~G~PvI~~~~ 372 (462)
|++|.--+ ++-+.+|-..|+|+++.+.
T Consensus 95 ~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 95 RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp --SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 66554433 8999999999999999874
No 222
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=67.16 E-value=14 Score=33.40 Aligned_cols=36 Identities=11% Similarity=0.046 Sum_probs=22.2
Q ss_pred CeEEEEe-cCCCchHHHHHHHHHHHHhhhcCCceEEE
Q 012492 63 KNVLILM-SDTGGGHRASAEAIRDAFKIEFGDEYRIF 98 (462)
Q Consensus 63 ~kIli~~-~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~ 98 (462)
||||+++ +..|+=...++..+++.|.+....++++.
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~~~~~~v~ 37 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGELIGGAEVH 37 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSEETTEEEE
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCcCCCceEE
Confidence 7999998 55753356788899999985433334443
No 223
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=66.19 E-value=6.6 Score=31.72 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=27.2
Q ss_pred HHHHHhcchhee--c---CChhhHHH---HHHhCCCEEEecCC
Q 012492 339 EKWMGACDCIIT--K---AGPGTIAE---ALIRGLPIILNDYI 373 (462)
Q Consensus 339 ~~l~~~aD~vV~--~---sg~~t~~E---Ala~G~PvI~~~~~ 373 (462)
.+.+..||++|. . ...+|..| |.+.|+||++....
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 379999999874 2 35788999 78999999998753
No 224
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=66.00 E-value=20 Score=41.33 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCeEEEEecC---CCchH--HHHHHHHHHHHhhhcCCceEEEEEecccc
Q 012492 61 RTKNVLILMSD---TGGGH--RASAEAIRDAFKIEFGDEYRIFVKDVCKE 105 (462)
Q Consensus 61 ~~~kIli~~~~---~G~Gh--~~~a~aLa~~L~~~g~~~~~v~v~d~~~~ 105 (462)
.++||+|++++ +|.|- ...+..++++|++.| ++++++|..++
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G---~~vi~v~~npe 599 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAG---YETIMVNCNPE 599 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCC---CEEEEEeCCcc
Confidence 46799999865 45453 346778889999987 47788876544
No 225
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=65.61 E-value=87 Score=26.83 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=36.3
Q ss_pred cchheecCC---hhhHHHHHHhCCCEEEecCCCCcccc--chHHHHH--CCceee--e-CCHHHHHHHHHHHhc-CCHHH
Q 012492 345 CDCIITKAG---PGTIAEALIRGLPIILNDYIPGQEKG--NVPYVVD--NGAGVF--T-RSPKETARIVTEWFS-TKTDE 413 (462)
Q Consensus 345 aD~vV~~sg---~~t~~EAla~G~PvI~~~~~~~~~~~--n~~~l~~--~G~g~~--~-~~~~~la~~i~~ll~-~d~~~ 413 (462)
+|++|+-+| +..-.=|...-+|||..|...+...+ ....+.+ .|+.+. . ++...-+-...++|. .|++.
T Consensus 56 ~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l 135 (150)
T PF00731_consen 56 ADVIIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPEL 135 (150)
T ss_dssp ESEEEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHH
T ss_pred CEEEEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHH
Confidence 577876555 33333456668999999976442211 1112222 344332 2 222222222233332 57888
Q ss_pred HHHHHHHHHh
Q 012492 414 LKRMSENALK 423 (462)
Q Consensus 414 ~~~m~~~a~~ 423 (462)
++++.+...+
T Consensus 136 ~~kl~~~~~~ 145 (150)
T PF00731_consen 136 REKLRAYREK 145 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777665443
No 226
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=65.44 E-value=33 Score=30.71 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=19.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhc
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g 91 (462)
|||+|++++.| +-+.++.++++..+
T Consensus 1 ~riail~sg~g----s~~~~ll~~~~~~~ 25 (190)
T TIGR00639 1 KRIVVLISGNG----SNLQAIIDACKEGK 25 (190)
T ss_pred CeEEEEEcCCC----hhHHHHHHHHHcCC
Confidence 68999998886 56668889988754
No 227
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=64.85 E-value=21 Score=41.12 Aligned_cols=42 Identities=33% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCCeEEEEecC---CCchH--HHHHHHHHHHHhhhcCCceEEEEEecccc
Q 012492 61 RTKNVLILMSD---TGGGH--RASAEAIRDAFKIEFGDEYRIFVKDVCKE 105 (462)
Q Consensus 61 ~~~kIli~~~~---~G~Gh--~~~a~aLa~~L~~~g~~~~~v~v~d~~~~ 105 (462)
.++||+|+.++ .|.|. -..+..++++|++.| +++++++..++
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G---~~vI~vn~npe 600 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEG---YETIMINNNPE 600 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcC---CEEEEEeCCcc
Confidence 46899999865 44344 336778899999987 47777775543
No 228
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=62.56 E-value=47 Score=34.72 Aligned_cols=103 Identities=12% Similarity=0.142 Sum_probs=64.4
Q ss_pred eccc--hhHHHHHHhcchheecCC---hhhHHHHHHhCCCEEEecCCCCccccchH----------------HHHH-CCc
Q 012492 332 RGFE--TQMEKWMGACDCIITKAG---PGTIAEALIRGLPIILNDYIPGQEKGNVP----------------YVVD-NGA 389 (462)
Q Consensus 332 ~g~~--~~~~~l~~~aD~vV~~sg---~~t~~EAla~G~PvI~~~~~~~~~~~n~~----------------~l~~-~G~ 389 (462)
.|.. +++..+++.+.++|.-+. |-+.+||++.|+|.|--...+.+...|.+ ++.+ -|-
T Consensus 327 HG~l~~~ef~~lL~~akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~ 406 (559)
T PF15024_consen 327 HGILSGDEFQQLLRKAKVFIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGE 406 (559)
T ss_pred cCcCCHHHHHHHHHhhhEeeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCC
Confidence 4544 688899999999997654 67789999999988765443222222221 2221 332
Q ss_pred --eeee--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcHHHHHHHHHHHHHhcc
Q 012492 390 --GVFT--RSPKETARIVTEWFSTKTDELKRMSENALKL-AQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 390 --g~~~--~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~-~~~~~~~~ia~~i~~l~~~~ 444 (462)
.+.| .+..++.++|.++| ..+- ..+ ...+..+.+.+.+..+++.+
T Consensus 407 PhVytVd~~n~~~v~~Avk~il-~~~v---------~Py~P~efT~egmLeRv~~~ie~q 456 (559)
T PF15024_consen 407 PHVYTVDINNSTEVEAAVKAIL-ATPV---------EPYLPYEFTCEGMLERVNALIEKQ 456 (559)
T ss_pred CeEEEEcCCCHHHHHHHHHHHH-hcCC---------CCcCCcccCHHHHHHHHHHHHHhh
Confidence 2333 46778888888887 3321 122 23467778888887777644
No 229
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=62.22 E-value=1.4e+02 Score=28.02 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=25.4
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
||+|+++.-|.|..+.+.++|..+.+.|.
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~ 29 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGK 29 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCC
Confidence 57888888888999999999999999874
No 230
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=61.69 E-value=64 Score=29.71 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=22.9
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEE
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~ 197 (462)
+.+++|+||++|..+|-.....=..+|..-...++|+|.+
T Consensus 54 ~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI 93 (277)
T PRK00994 54 KMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVI 93 (277)
T ss_pred HHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEE
Confidence 4578999999998886543221012221100138899854
No 231
>PRK06756 flavodoxin; Provisional
Probab=61.65 E-value=17 Score=30.80 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=22.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
||||+|+..|.-|-....|.+|++.|++.|.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~ 31 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETEN 31 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCC
Confidence 5799999877522455568899999987763
No 232
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=61.46 E-value=1.3e+02 Score=30.54 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=37.7
Q ss_pred EEEEccCCHH-HHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC--hhhHHHHHHhCCCEEEecCC
Q 012492 306 LIIICGRNRT-LASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG--PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 306 ~lvv~G~~~~-l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg--~~t~~EAla~G~PvI~~~~~ 373 (462)
-+.++.+..+ .....++++ .....+| +++.+.+..||++|+..+ ..++...+.-+.|.++.|..
T Consensus 207 ~I~V~nRt~~ra~~La~~~~---~~~~~~~-~~l~~~l~~aDiVI~aT~a~~~vi~~~~~~~~~~~~iDLa 273 (414)
T PRK13940 207 QIMLANRTIEKAQKITSAFR---NASAHYL-SELPQLIKKADIIIAAVNVLEYIVTCKYVGDKPRVFIDIS 273 (414)
T ss_pred EEEEECCCHHHHHHHHHHhc---CCeEecH-HHHHHHhccCCEEEECcCCCCeeECHHHhCCCCeEEEEeC
Confidence 4566777743 222222221 1233444 677899999999997554 22223344568899999874
No 233
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=58.81 E-value=90 Score=31.54 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=42.2
Q ss_pred HHHHhcchhe-ecCChhh-------------HHHHHHhCCCEEEecCCC------CccccchHHHHHCCceeeeC-----
Q 012492 340 KWMGACDCII-TKAGPGT-------------IAEALIRGLPIILNDYIP------GQEKGNVPYVVDNGAGVFTR----- 394 (462)
Q Consensus 340 ~l~~~aD~vV-~~sg~~t-------------~~EAla~G~PvI~~~~~~------~~~~~n~~~l~~~G~g~~~~----- 394 (462)
++...+|++| .|...+| ..=++++++|+++.|.-+ ..-..|...|.+.|.-++-+
T Consensus 78 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~l 157 (399)
T PRK05579 78 ELAKWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRL 157 (399)
T ss_pred hcccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccc
Confidence 5566799865 4443222 233566799999999532 11233888888888766533
Q ss_pred -----------CHHHHHHHHHHHh
Q 012492 395 -----------SPKETARIVTEWF 407 (462)
Q Consensus 395 -----------~~~~la~~i~~ll 407 (462)
+++++...+.+.+
T Consensus 158 a~~~~g~gr~~~~~~I~~~~~~~~ 181 (399)
T PRK05579 158 ACGDVGPGRMAEPEEIVAAAERAL 181 (399)
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHh
Confidence 4666666666665
No 234
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=58.66 E-value=75 Score=28.88 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=33.6
Q ss_pred HHHHhcchhe-ecCC---------------hhhHHHHHHhCCCEEEecCCC------CccccchHHHHHCCceeeeC
Q 012492 340 KWMGACDCII-TKAG---------------PGTIAEALIRGLPIILNDYIP------GQEKGNVPYVVDNGAGVFTR 394 (462)
Q Consensus 340 ~l~~~aD~vV-~~sg---------------~~t~~EAla~G~PvI~~~~~~------~~~~~n~~~l~~~G~g~~~~ 394 (462)
++-+.||++| .|.. -.++++|...++|+++.|.-+ ..-..|...|.+.|.-++-+
T Consensus 92 ~La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P 168 (209)
T PLN02496 92 ELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 168 (209)
T ss_pred HhhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECC
Confidence 5667899865 4432 222445555689999999732 11123677787777655433
No 235
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=58.51 E-value=16 Score=31.27 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=25.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
||||+|+.+|..|.....|..|++.|...++
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~ 31 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGF 31 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCc
Confidence 7899999888645888889999999988764
No 236
>PLN02764 glycosyltransferase family protein
Probab=58.33 E-value=56 Score=33.62 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=26.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
+.|+++.... .||..+.+.||+.|..+| ..+++.
T Consensus 6 ~Hvvl~P~pa-qGHi~P~l~LAk~La~~g---~~vT~~ 39 (453)
T PLN02764 6 FHVLMYPWFA-TGHMTPFLFLANKLAEKG---HTVTFL 39 (453)
T ss_pred cEEEEECCcc-cccHHHHHHHHHHHHhCC---CEEEEE
Confidence 5788877665 699999999999999776 344544
No 237
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=57.39 E-value=1.3e+02 Score=27.21 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=25.3
Q ss_pred HHHhcchhe----ec--CC-----hhhHHHHHH-hCCCEEEecCCCC
Q 012492 341 WMGACDCII----TK--AG-----PGTIAEALI-RGLPIILNDYIPG 375 (462)
Q Consensus 341 l~~~aD~vV----~~--sg-----~~t~~EAla-~G~PvI~~~~~~~ 375 (462)
+...+|++| .. +| ..+++|.+- .++|+|+.+.+.|
T Consensus 116 ~~~~~dvIVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPSG 162 (203)
T COG0062 116 EPESADVIVDALFGTGLSGPLREPFASLIEAINASGKPIVAVDIPSG 162 (203)
T ss_pred ccccCCEEEEeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCCCC
Confidence 778889887 11 11 356777665 9999999999854
No 238
>PRK14098 glycogen synthase; Provisional
Probab=57.33 E-value=16 Score=38.00 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=27.4
Q ss_pred CCCCeEEEEec------CCCchHHHHHHHHHHHHhhhcCC
Q 012492 60 ERTKNVLILMS------DTGGGHRASAEAIRDAFKIEFGD 93 (462)
Q Consensus 60 ~~~~kIli~~~------~~G~Gh~~~a~aLa~~L~~~g~~ 93 (462)
.+||||++++. -+| |-.-.+.+|.++|+++||+
T Consensus 3 ~~~~~il~v~~E~~p~~k~G-gl~dv~~~Lp~al~~~g~~ 41 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVS-ALADFMASFPQALEEEGFE 41 (489)
T ss_pred CCCcEEEEEeecchhhcccc-hHHHHHHHHHHHHHHCCCe
Confidence 35699999984 385 8889999999999999863
No 239
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=57.07 E-value=1.5e+02 Score=27.23 Aligned_cols=66 Identities=6% Similarity=-0.149 Sum_probs=35.1
Q ss_pred CceEEEEccCC-HHHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC-----hhhHHHHHHhCCCEEEecCC
Q 012492 303 IGQLIIICGRN-RTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG-----PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 303 ~~~~lvv~G~~-~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg-----~~t~~EAla~G~PvI~~~~~ 373 (462)
+.++.|+.-.- +++.+... ..++++..-.- -...+..++++|+... -....+|-..|.++.+.+.+
T Consensus 48 gA~VtVVap~i~~el~~l~~----~~~i~~~~r~~-~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p 119 (223)
T PRK05562 48 GCYVYILSKKFSKEFLDLKK----YGNLKLIKGNY-DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDY 119 (223)
T ss_pred CCEEEEEcCCCCHHHHHHHh----CCCEEEEeCCC-ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCc
Confidence 34555554433 23433322 34566653210 1246678888887654 22334455668888887654
No 240
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=56.35 E-value=18 Score=33.26 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=27.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
+||+++|++.+||-|-...+.+|+++|+.+|.
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~ 32 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGY 32 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCC
Confidence 35667777789999999999999999999874
No 241
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=54.93 E-value=1.6e+02 Score=26.48 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=25.7
Q ss_pred CeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCC
Q 012492 328 PVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 328 ~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~ 373 (462)
.+.+.... -....+..+|++|+..+ -..+.+....+.++-+.+.+
T Consensus 55 ~i~~~~~~-~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~ 103 (202)
T PRK06718 55 KIRWKQKE-FEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDA 103 (202)
T ss_pred CEEEEecC-CChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCC
Confidence 45554322 11356788999887554 22344444667777766654
No 242
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=54.72 E-value=88 Score=32.21 Aligned_cols=34 Identities=12% Similarity=0.307 Sum_probs=25.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
..|+++.... .||..+.+.||+.|..+| ..++++
T Consensus 8 ~HVvlvPfpa-qGHi~P~l~LAk~La~~G---~~VT~v 41 (451)
T PLN02410 8 RRVVLVPVPA-QGHISPMMQLAKTLHLKG---FSITIA 41 (451)
T ss_pred CEEEEECCCc-cccHHHHHHHHHHHHcCC---CEEEEE
Confidence 4677776654 699999999999999775 344544
No 243
>PRK06703 flavodoxin; Provisional
Probab=53.74 E-value=26 Score=29.77 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhc
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g 91 (462)
||||+|+..|.-|-....|..|++.|...|
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g 30 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFD 30 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcC
Confidence 679999987753355666789999998765
No 244
>PLN02735 carbamoyl-phosphate synthase
Probab=52.57 E-value=16 Score=42.04 Aligned_cols=42 Identities=24% Similarity=0.191 Sum_probs=30.4
Q ss_pred CCCeEEEEecC---CCchHH--HHHHHHHHHHhhhcCCceEEEEEecccc
Q 012492 61 RTKNVLILMSD---TGGGHR--ASAEAIRDAFKIEFGDEYRIFVKDVCKE 105 (462)
Q Consensus 61 ~~~kIli~~~~---~G~Gh~--~~a~aLa~~L~~~g~~~~~v~v~d~~~~ 105 (462)
.++||+|+++| .|.|-+ ..+..++.+|++.| +++++++..++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G---~~tI~v~~npe 619 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAG---YETIMMNSNPE 619 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcC---CeEEEEeCCCc
Confidence 46899999866 554444 55677889999987 57777765544
No 245
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=51.85 E-value=1.8e+02 Score=27.26 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 65 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 65 Ili~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|.++=+|.| | +.+.+++++..|+...+++.|.
T Consensus 1 IgvfDSGiG-G-----ltv~~~l~~~~p~~~~iy~~D~ 32 (251)
T TIGR00067 1 IGVFDSGVG-G-----LSVLKEIRKQLPKEHYIYVGDT 32 (251)
T ss_pred CEEEeCCcc-H-----HHHHHHHHHHCCCCCEEEEecC
Confidence 456667775 3 4455666666666667788875
No 246
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=51.78 E-value=1.3e+02 Score=26.92 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=29.0
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+|.++.+.+|.|-.+.+..||..++.++ ..+-+...|.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~-~~v~lis~D~ 39 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKG-KKVALISADT 39 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEEST
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhcc-ccceeecCCC
Confidence 6888899999999999999999999874 3334444553
No 247
>PRK05920 aromatic acid decarboxylase; Validated
Probab=51.63 E-value=85 Score=28.42 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=26.7
Q ss_pred HHHHHhCCCEEEecCCCC---ccccchHHHHHCCceeeeC
Q 012492 358 AEALIRGLPIILNDYIPG---QEKGNVPYVVDNGAGVFTR 394 (462)
Q Consensus 358 ~EAla~G~PvI~~~~~~~---~~~~n~~~l~~~G~g~~~~ 394 (462)
.++++.++|+++.|.... ....|...|.+.|+.++-+
T Consensus 124 ~~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~P 163 (204)
T PRK05920 124 DVVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIILPA 163 (204)
T ss_pred HHHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeCC
Confidence 368899999999997421 1134888898888776544
No 248
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.37 E-value=94 Score=30.07 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=28.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
+-..++++.||+|-.+...++.+++-+..+ .+.+.+-|
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~-~HIlTIED 162 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKA-KHILTIED 162 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCC-cceEEecC
Confidence 345556788999999999999999987643 34555555
No 249
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=51.28 E-value=1.5e+02 Score=28.22 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=40.6
Q ss_pred CCceEEEEccCCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCChh---------------hHHHHHHhC
Q 012492 302 PIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAGPG---------------TIAEALIRG 364 (462)
Q Consensus 302 ~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~---------------t~~EAla~G 364 (462)
++..+++++....+..+.. +|...... .++.+.+..||++|.-+|+. .+.-|..+|
T Consensus 27 ~~~~~~v~s~~p~~~~~~~-------~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~ 99 (298)
T TIGR03609 27 PGVEPTVLSNDPAETAKLY-------GVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFG 99 (298)
T ss_pred CCCeEEEecCChHHHHhhc-------CceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcC
Confidence 4667777766665443322 23333322 36678889999999765511 123356689
Q ss_pred CCEEEecCCC
Q 012492 365 LPIILNDYIP 374 (462)
Q Consensus 365 ~PvI~~~~~~ 374 (462)
+|+++....-
T Consensus 100 k~~~~~g~gi 109 (298)
T TIGR03609 100 KPVILWGQGI 109 (298)
T ss_pred CCEEEEeccc
Confidence 9999988753
No 250
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=51.05 E-value=32 Score=32.84 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=19.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
|||||++++- ....+|.++|.++| ++++..
T Consensus 1 MriLI~GasG-----~lG~~l~~~l~~~~---~~v~~~ 30 (286)
T PF04321_consen 1 MRILITGASG-----FLGSALARALKERG---YEVIAT 30 (286)
T ss_dssp EEEEEETTTS-----HHHHHHHHHHTTTS---EEEEEE
T ss_pred CEEEEECCCC-----HHHHHHHHHHhhCC---CEEEEe
Confidence 7999986432 33456888898875 454533
No 251
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=50.75 E-value=56 Score=29.07 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=22.2
Q ss_pred CeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 63 KNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 63 ~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
||||+++ ...|+=-..++..++++|..+
T Consensus 1 ~kvLvTGFePF~~~~~NPs~e~vk~L~~~ 29 (207)
T COG2039 1 MKVLVTGFEPFGGEPINPSWEAVKELNGR 29 (207)
T ss_pred CeEEEEeccCCCCCCCChHHHHHHhcCcc
Confidence 5789887 457766778999999999766
No 252
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=50.67 E-value=51 Score=24.95 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=35.8
Q ss_pred eEEEEccCCH--------HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEec
Q 012492 305 QLIIICGRNR--------TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILND 371 (462)
Q Consensus 305 ~~lvv~G~~~--------~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~ 371 (462)
+++++||.+- .+++.+++++++..+.... ..+...+...+|++++.+.-..--+.-..++|+.+.+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~-~~~~~~~~~~~D~il~~~~i~~~~~~~~~~~pv~~I~ 74 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS-ILEVEEIADDADLILLTPQIAYEDLKEFAGKPVPVIP 74 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE-TTTHHHHHTT-SEEEEEESSGGHHHHHHTTSBEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec-ccccccccCCCcEEEEcCccchhhhhhhcCCeEEEEE
Confidence 3577888773 1344445555433333222 3456677788999988664221133444557766655
No 253
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=50.50 E-value=30 Score=32.29 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
|+.|+|.+.--|-|-.+.+.+||.+|++.|. .|.++|.-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~---~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGE---SVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCC---cEEEEeCC
Confidence 5566666655566899999999999999873 67778764
No 254
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=50.26 E-value=32 Score=30.93 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=26.5
Q ss_pred CCeEEEEecCCCchHHHH-HHHHHHHHhh-hcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRAS-AEAIRDAFKI-EFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~-a~aLa~~L~~-~g~~~~~v~v~d~ 102 (462)
||||+|+..|. .||... +.++++.+++ .| .++.+.++
T Consensus 1 M~kilIvy~S~-~G~T~~lA~~ia~g~~~~~G---~ev~~~~l 39 (200)
T PRK03767 1 MAKVLVLYYSM-YGHIETMAEAVAEGAREVAG---AEVTIKRV 39 (200)
T ss_pred CCeEEEEEcCC-CCHHHHHHHHHHHHHhhcCC---cEEEEEec
Confidence 57999999987 477666 5678888876 54 36665554
No 255
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=48.67 E-value=1.4e+02 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=26.0
Q ss_pred hhHHHHHHhcchheecCC--------------hhhHHHHHHhCCCEEEecC
Q 012492 336 TQMEKWMGACDCIITKAG--------------PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg--------------~~t~~EAla~G~PvI~~~~ 372 (462)
+++.+.+..||+++..+| -..+.+....|+|++-+-.
T Consensus 72 ~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SA 122 (210)
T cd03129 72 PDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSA 122 (210)
T ss_pred HHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCH
Confidence 677789999999887665 1135666667888776653
No 256
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=48.33 E-value=46 Score=30.56 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=27.6
Q ss_pred CCeEEEEecC-CCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~-~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
|-+|.+++++ -|-|..+...+|.-+|.++|. .+.++|
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~Gk---Kv~liD 38 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGK---KVVLID 38 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCC---eEEEEe
Confidence 4567777655 456888888999999999984 556665
No 257
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=48.12 E-value=84 Score=32.48 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=41.9
Q ss_pred HHHHhcchhe-ecCChhh-------------HHHHHHhCCCEEEecCCCCc------cccchHHHHHCCceeeeC-----
Q 012492 340 KWMGACDCII-TKAGPGT-------------IAEALIRGLPIILNDYIPGQ------EKGNVPYVVDNGAGVFTR----- 394 (462)
Q Consensus 340 ~l~~~aD~vV-~~sg~~t-------------~~EAla~G~PvI~~~~~~~~------~~~n~~~l~~~G~g~~~~----- 394 (462)
++-..||++| .|...+| ..=+++.++|+++.|.-+.. -..|...|.+.|.-++-+
T Consensus 142 ~la~~aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g~l 221 (475)
T PRK13982 142 RLARDCDLIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEM 221 (475)
T ss_pred hhhhhcCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCcc
Confidence 4556799865 4443221 23357789999999985321 123788888887665422
Q ss_pred ------------CHHHHHHHHHHHh
Q 012492 395 ------------SPKETARIVTEWF 407 (462)
Q Consensus 395 ------------~~~~la~~i~~ll 407 (462)
+++++.+.+.+++
T Consensus 222 A~~g~~G~Grm~e~~~I~~~v~~~~ 246 (475)
T PRK13982 222 AERGEAGVGRMAEPLEIAAAAEALL 246 (475)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHH
Confidence 3556666666665
No 258
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=47.88 E-value=60 Score=25.86 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=37.4
Q ss_pred eEEEEccCCHH-------HHHHHhhccCCCCeEEeccchhHHHHHH--hcchheecCC----hhhHHH-HHHhCCCEEEe
Q 012492 305 QLIIICGRNRT-------LASTLQSEEWKIPVKVRGFETQMEKWMG--ACDCIITKAG----PGTIAE-ALIRGLPIILN 370 (462)
Q Consensus 305 ~~lvv~G~~~~-------l~~~~~~~~~~~~V~~~g~~~~~~~l~~--~aD~vV~~sg----~~t~~E-Ala~G~PvI~~ 370 (462)
+++++||.|-. +.+.+++.+.+-.+.-.+. .++..... .+|++++.+. -..+-+ +-..|+|+.+.
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~-~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I 81 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITA-TEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQI 81 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecH-HHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEe
Confidence 46778887752 2333444454433333332 35655554 5899888654 112233 22478999998
Q ss_pred cC
Q 012492 371 DY 372 (462)
Q Consensus 371 ~~ 372 (462)
|.
T Consensus 82 ~~ 83 (104)
T PRK09590 82 PP 83 (104)
T ss_pred CH
Confidence 74
No 259
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=47.87 E-value=2.1e+02 Score=25.78 Aligned_cols=37 Identities=19% Similarity=0.061 Sum_probs=20.5
Q ss_pred HHhhCCCEEEECCcccchHH-HHHHHHcCCCCCCeEEEEecC
Q 012492 160 LMEYKPDIIISVHPLMQHIP-LWVLKWQGLQKKVIFVTVITD 200 (462)
Q Consensus 160 l~~~kPDvVi~~~~~~~~~~-~~~~~~~~~~~~iP~v~~~~d 200 (462)
+...++|.||.......... +..+.. .++|+|.+...
T Consensus 51 ~~~~~~d~ii~~~~~~~~~~~~~~l~~----~~ip~v~~~~~ 88 (264)
T cd01537 51 LIARGVDGIIIAPSDLTAPTIVKLARK----AGIPVVLVDRD 88 (264)
T ss_pred HHHcCCCEEEEecCCCcchhHHHHhhh----cCCCEEEeccC
Confidence 34558998887654333221 112222 48999876544
No 260
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=47.79 E-value=94 Score=30.38 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=24.1
Q ss_pred CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 164 KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 164 kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
.||+||+..+.....+..-++. .+||+|.++
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~k----l~IPvIaiv 182 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQR----LGIPVAAIV 182 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHH----cCCCEEEEe
Confidence 7999999998877765555554 599999865
No 261
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=46.93 E-value=56 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.7
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
..||+||...|.....+..-+.. .+||+|.++
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~----l~IP~Iai~ 138 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASE----VGIPIVALC 138 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHH----cCCCEEEEe
Confidence 46999999998877776555554 499999765
No 262
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=46.82 E-value=49 Score=38.09 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=29.2
Q ss_pred CCCeEEEEecC---CCchH--HHHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 61 RTKNVLILMSD---TGGGH--RASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 61 ~~~kIli~~~~---~G~Gh--~~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
..+||++++++ +|.|. -..+..++++|++.| +++++++..+
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G---~~vI~v~~np 598 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELG---YETIMINYNP 598 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCC---CEEEEEecCC
Confidence 34799999865 45454 345778899999997 4777776544
No 263
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=45.79 E-value=2.3e+02 Score=25.63 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=36.5
Q ss_pred CChhhHHHHHH-hCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHh
Q 012492 352 AGPGTIAEALI-RGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 352 sg~~t~~EAla-~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll 407 (462)
+|+...-|.++ .++|+|+....++- .--+.+.+.|.|+++-..+.+..+=++.|
T Consensus 74 PGP~kARE~l~~s~~PaiiigDaPg~--~vkdeleeqGlGYIivk~DpmiGArREFL 128 (277)
T COG1927 74 PGPKKAREILSDSDVPAIIIGDAPGL--KVKDELEEQGLGYIIVKADPMIGARREFL 128 (277)
T ss_pred CCchHHHHHHhhcCCCEEEecCCccc--hhHHHHHhcCCeEEEecCCcccchhhhhc
Confidence 46777888877 79999987765432 23356888999987755555555555555
No 264
>PRK09267 flavodoxin FldA; Validated
Probab=45.76 E-value=25 Score=30.59 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCchHHHH-HHHHHHHHh
Q 012492 62 TKNVLILMSDTGGGHRAS-AEAIRDAFK 88 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~-a~aLa~~L~ 88 (462)
||||+|+..|. .||... |..|++.|.
T Consensus 1 mmki~IiY~S~-tGnT~~vA~~Ia~~l~ 27 (169)
T PRK09267 1 MAKIGIFFGSD-TGNTEDIAKMIQKKLG 27 (169)
T ss_pred CCeEEEEEECC-CChHHHHHHHHHHHhC
Confidence 67999999886 366655 778888875
No 265
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=45.74 E-value=47 Score=31.86 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=20.7
Q ss_pred CCCCCCeEEEEecCCCchHHHHHHHHHHHHhhh
Q 012492 58 GAERTKNVLILMSDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 58 ~~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
...++|||+++.++.| +-..+|.++.+..
T Consensus 85 ~~~~~~ri~vl~Sg~g----snl~al~~~~~~~ 113 (286)
T PRK06027 85 DSAERKRVVILVSKED----HCLGDLLWRWRSG 113 (286)
T ss_pred ccccCcEEEEEEcCCC----CCHHHHHHHHHcC
Confidence 3446789999998885 4455677887653
No 266
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=45.38 E-value=83 Score=30.07 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhCCCEEEECCc
Q 012492 153 AKEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~ 173 (462)
...+.+.+++++||+|++.+.
T Consensus 149 e~~~~~~l~~~~~Dlivlagy 169 (280)
T TIGR00655 149 EKRQLELLKQYQVDLVVLAKY 169 (280)
T ss_pred HHHHHHHHHHhCCCEEEEeCc
Confidence 345667899999999988764
No 267
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=45.28 E-value=1.2e+02 Score=27.83 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=23.8
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
..||+||...+.-...+..-+.. .+||+|.++
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~----l~IP~I~iv 185 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARK----LGIPVVAIV 185 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHH----cCCCEEEEe
Confidence 37999999998776655555554 489999765
No 268
>PRK08105 flavodoxin; Provisional
Probab=45.25 E-value=38 Score=28.90 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
|.||.|+.++..|-....|..|++.|++.|.
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g~ 31 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQGH 31 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCCC
Confidence 5689999888655777778899999987763
No 269
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=45.15 E-value=1.1e+02 Score=25.26 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=22.9
Q ss_pred HHHHHhcchhee-cC----------C------hhhHHHHHHhCCCEEEecC
Q 012492 339 EKWMGACDCIIT-KA----------G------PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 339 ~~l~~~aD~vV~-~s----------g------~~t~~EAla~G~PvI~~~~ 372 (462)
.++...+|++|. |. | ..++..++..++|+|+.|.
T Consensus 68 ~~~~~~~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~ 118 (129)
T PF02441_consen 68 IELSRWADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPA 118 (129)
T ss_dssp HHHHHTESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEE
T ss_pred ccccccCCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEe
Confidence 355778998763 32 2 3445566666999999986
No 270
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=44.88 E-value=33 Score=33.71 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=72.4
Q ss_pred CCC-ceEEEEccCCH-----HHHHHHhhcc--CCCCeEEeccchhHHHHHH-hcchheecCCh----hhHHHHHHhCCCE
Q 012492 301 RPI-GQLIIICGRNR-----TLASTLQSEE--WKIPVKVRGFETQMEKWMG-ACDCIITKAGP----GTIAEALIRGLPI 367 (462)
Q Consensus 301 ~~~-~~~lvv~G~~~-----~l~~~~~~~~--~~~~V~~~g~~~~~~~l~~-~aD~vV~~sg~----~t~~EAla~G~Pv 367 (462)
.|+ +..+.+|-... +....+..+. ......|.|.. +++.+|+ ..|+||++-.. -.-.|++.-|=|.
T Consensus 219 ~P~~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~-~~p~fla~~tD~VvSHqWeN~lNYlY~daLyggYPL 297 (364)
T PF10933_consen 219 DPDAVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF-DFPDFLAQHTDAVVSHQWENPLNYLYYDALYGGYPL 297 (364)
T ss_pred ChhhcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec-ChHHHHHhCCCEEEeccccchhhHHHHHHHhcCCCc
Confidence 344 35566665432 2223333332 24556777766 5677775 67999998642 2358999999999
Q ss_pred EEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 012492 368 ILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQP 427 (462)
Q Consensus 368 I~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~ 427 (462)
|- |...+.+ +|+..+ |..+=++++.+.+.++.+..+.+.++++++..+
T Consensus 298 VH----------NS~~l~d--~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~ 347 (364)
T PF10933_consen 298 VH----------NSPLLKD--VGYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLLDR 347 (364)
T ss_pred cc----------Ccchhcc--cCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 85 5566655 555554 555556777766656777788888888877654
No 271
>PRK09271 flavodoxin; Provisional
Probab=44.63 E-value=46 Score=28.65 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=23.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
|||+|+..+.-|-....|..|++.|...|.
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~ 30 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGH 30 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCC
Confidence 799999887633556778899999998764
No 272
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=44.45 E-value=74 Score=29.34 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=33.4
Q ss_pred CChhhHHHHHH-hCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHh
Q 012492 352 AGPGTIAEALI-RGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 352 sg~~t~~EAla-~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll 407 (462)
+|+...-|.+. .|+|+|++...++.. -.+.+.+.|.|+++-..+.+.-+=+++|
T Consensus 74 PGP~~ARE~l~~~~iP~IvI~D~p~~K--~~d~l~~~g~GYIivk~DpMIGArREFL 128 (277)
T PRK00994 74 PGPKKAREILKAAGIPCIVIGDAPGKK--VKDAMEEQGLGYIIVKADPMIGARREFL 128 (277)
T ss_pred CCchHHHHHHHhcCCCEEEEcCCCccc--hHHHHHhcCCcEEEEecCccccchhhcc
Confidence 36767777665 689999877654432 2367888999987643333333334443
No 273
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=44.18 E-value=64 Score=29.21 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=25.0
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
..||+||...+.....+..-|.. .+||+|.++
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~k----l~IP~Iaiv 144 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIE----VGIPVVALC 144 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHH----hCCCEEEEE
Confidence 38999999999887776655554 499999865
No 274
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=43.34 E-value=66 Score=29.25 Aligned_cols=35 Identities=40% Similarity=0.799 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH
Q 012492 269 PAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT 315 (462)
Q Consensus 269 ~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~ 315 (462)
-+||++||..|-+ . ++++++.+. + .-+++||++.+
T Consensus 6 nTiLITGG~sGIG--l----~lak~f~el-----g-N~VIi~gR~e~ 40 (245)
T COG3967 6 NTILITGGASGIG--L----ALAKRFLEL-----G-NTVIICGRNEE 40 (245)
T ss_pred cEEEEeCCcchhh--H----HHHHHHHHh-----C-CEEEEecCcHH
Confidence 4689999988754 2 333444331 1 23678999874
No 275
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=43.13 E-value=1e+02 Score=30.54 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=22.3
Q ss_pred cchheecCChh---hHHHHHHhCCCEEEecC
Q 012492 345 CDCIITKAGPG---TIAEALIRGLPIILNDY 372 (462)
Q Consensus 345 aD~vV~~sg~~---t~~EAla~G~PvI~~~~ 372 (462)
-|++++.+|.. .++-|..+|+|+++...
T Consensus 92 Pdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~ 122 (352)
T PRK12446 92 PDVIFSKGGFVSVPVVIGGWLNRVPVLLHES 122 (352)
T ss_pred CCEEEecCchhhHHHHHHHHHcCCCEEEECC
Confidence 47788877754 48999999999998665
No 276
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=43.07 E-value=1.3e+02 Score=28.32 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=24.1
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
..||+||...+.-...++.-+.. .+||+|.++
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~k----l~IPiIaiv 187 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARK----LGIPVVAIV 187 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHH----hCCCEEEEe
Confidence 36999999998777665555554 489999865
No 277
>PLN02285 methionyl-tRNA formyltransferase
Probab=42.84 E-value=61 Score=31.86 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=13.5
Q ss_pred HHHHHHhhCCCEEEECC
Q 012492 156 VEAGLMEYKPDIIISVH 172 (462)
Q Consensus 156 l~~~l~~~kPDvVi~~~ 172 (462)
+.+.+++++||++|+.+
T Consensus 85 ~~~~l~~~~~Dliv~~~ 101 (334)
T PLN02285 85 FLSALRELQPDLCITAA 101 (334)
T ss_pred HHHHHHhhCCCEEEhhH
Confidence 34568899999998875
No 278
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=42.60 E-value=49 Score=31.38 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=24.4
Q ss_pred CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCC
Q 012492 164 KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDL 201 (462)
Q Consensus 164 kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~ 201 (462)
+.||.|+++.-.++++..+++.. .++|++...|..
T Consensus 172 ~advyHsvstGyAgl~g~~~k~~---~g~P~lLTEHGI 206 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLLGALAKYR---YGRPFLLTEHGI 206 (268)
T ss_pred CCCEEecCCccHHHHHHHHHHHH---hCCCEEEecCCc
Confidence 45999988876666655666654 599997665543
No 279
>CHL00175 minD septum-site determining protein; Validated
Probab=42.56 E-value=51 Score=31.29 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=27.1
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.|.|+++--|-|-.+.+.+||.+|.+.| ..|.++|.
T Consensus 17 vi~v~s~KGGvGKTt~a~nLA~~La~~g---~~vlliD~ 52 (281)
T CHL00175 17 IIVITSGKGGVGKTTTTANLGMSIARLG---YRVALIDA 52 (281)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCC---CeEEEEeC
Confidence 4455555567799999999999999876 46777764
No 280
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=42.31 E-value=61 Score=30.29 Aligned_cols=32 Identities=13% Similarity=0.353 Sum_probs=25.1
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
..||+||+..|.....+..-+.. .+||+|.++
T Consensus 117 ~~P~llIV~Dp~~d~qAI~EA~~----lnIPvIal~ 148 (249)
T PTZ00254 117 MEPRLLIVTDPRTDHQAIREASY----VNIPVIALC 148 (249)
T ss_pred CCCCEEEEeCCCcchHHHHHHHH----hCCCEEEEe
Confidence 47999999999887776665654 499999865
No 281
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=42.27 E-value=1.9e+02 Score=28.88 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=36.7
Q ss_pred EEEccCCHH-HHHHHhhccCCCCeEEecc----chhHHHHHHhcchheecCC---hhhHHH-HHHhCCCEEEe
Q 012492 307 IIICGRNRT-LASTLQSEEWKIPVKVRGF----ETQMEKWMGACDCIITKAG---PGTIAE-ALIRGLPIILN 370 (462)
Q Consensus 307 lvv~G~~~~-l~~~~~~~~~~~~V~~~g~----~~~~~~l~~~aD~vV~~sg---~~t~~E-Ala~G~PvI~~ 370 (462)
++++|++.+ +.+..++. ...++.+.-. .+++.++++.+|++|.-.| +..+++ |+..|++.|-.
T Consensus 26 v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 26 VTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp EEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEES
T ss_pred EEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCeecc
Confidence 566788764 33333321 2234544322 2468899999999997665 333444 78889998873
No 282
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=42.03 E-value=1.2e+02 Score=30.13 Aligned_cols=69 Identities=28% Similarity=0.396 Sum_probs=40.0
Q ss_pred eEEEEccCCHH------HHHHHhhccCCCCeEEeccc--hhHHHHHH-----hcchheecCChhhH----HHHHHhCCCE
Q 012492 305 QLIIICGRNRT------LASTLQSEEWKIPVKVRGFE--TQMEKWMG-----ACDCIITKAGPGTI----AEALIRGLPI 367 (462)
Q Consensus 305 ~~lvv~G~~~~------l~~~~~~~~~~~~V~~~g~~--~~~~~l~~-----~aD~vV~~sg~~t~----~EAla~G~Pv 367 (462)
+.+|++|.... +.+.++..+....+.|.|-. +++..+.. .+|++|.=+||-++ .=|--.|+|+
T Consensus 32 ~~lvv~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pf 111 (360)
T COG0371 32 RALVVTGENTYAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPF 111 (360)
T ss_pred ceEEEEChhHHHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCCCE
Confidence 45667777641 22333333333344455543 45555554 36888887665443 3356689999
Q ss_pred EEecCC
Q 012492 368 ILNDYI 373 (462)
Q Consensus 368 I~~~~~ 373 (462)
|+.|..
T Consensus 112 IsvPT~ 117 (360)
T COG0371 112 ISVPTI 117 (360)
T ss_pred EEecCc
Confidence 999974
No 283
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=40.81 E-value=92 Score=27.83 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=21.0
Q ss_pred CeEEEEecC-CCchHHHHHHHHHHHHhhhc
Q 012492 63 KNVLILMSD-TGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 63 ~kIli~~~~-~G~Gh~~~a~aLa~~L~~~g 91 (462)
|||+|++-+ .|+=...++..++++|.+..
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~~ 30 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPKLI 30 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhccccc
Confidence 689999844 55345678888999997653
No 284
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=40.63 E-value=56 Score=29.22 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
++.|+|.++..|.|-.+.+.+||.+|.+.|. .|.++|.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~---rVllID~ 54 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGY---KTLLIDG 54 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCC---eEEEEeC
Confidence 4556666666778999999999999999863 6777764
No 285
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=40.35 E-value=2.4e+02 Score=24.30 Aligned_cols=30 Identities=27% Similarity=0.154 Sum_probs=19.8
Q ss_pred cchheecCC---hhhHHHHHHhCCCEEEecCCC
Q 012492 345 CDCIITKAG---PGTIAEALIRGLPIILNDYIP 374 (462)
Q Consensus 345 aD~vV~~sg---~~t~~EAla~G~PvI~~~~~~ 374 (462)
.+++|+-+| ...-.=|...-+|||..|...
T Consensus 54 ~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~ 86 (156)
T TIGR01162 54 IKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPS 86 (156)
T ss_pred CeEEEEeCCccchhHHHHHhccCCCEEEecCCc
Confidence 577887666 222233566789999999753
No 286
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=40.04 E-value=94 Score=23.49 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=31.9
Q ss_pred eEEEEccCCHH----HH----HHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecC
Q 012492 305 QLIIICGRNRT----LA----STLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 305 ~~lvv~G~~~~----l~----~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
+++++||.+.. +. +.+.+.+....+.... ..++...+..+|++++...-. -..++|+|....
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~-~~~~~~~~~~~Dliist~~~~-----~~~~~p~i~v~~ 71 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGIDVKVEQCK-IAEVPSLLDDADLIVSTTKVP-----EDYGIPVINGLP 71 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEec-HHHhhcccCCCcEEEEcCCcC-----CCCCCCEEEEee
Confidence 45677877641 22 2333333322222222 234444567899998865411 134789887654
No 287
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=39.97 E-value=59 Score=29.72 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=25.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+|.++.+.||.|-...|.+||+.+. .+|++.|-
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g------~pvI~~Dr 34 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTG------APVISLDR 34 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--------EEEEE-S
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhC------CCEEEecc
Confidence 78999999999999999999998873 26676663
No 288
>PRK05568 flavodoxin; Provisional
Probab=39.84 E-value=68 Score=26.68 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=25.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+||+|+..|.-|.-...|.+|++.+.+.| +++.+.++
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g---~~v~~~~~ 38 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENG---AEVKLLNV 38 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCC---CeEEEEEC
Confidence 568888876642366666788999988765 35555543
No 289
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=39.75 E-value=71 Score=30.89 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=44.5
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcch
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW 139 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 139 (462)
+...||++++++. .| .+++-++++.| .+|+.+|-... .|- ++.. |+. .
T Consensus 10 ~~a~kvmLLGSGE-LG-----KEvaIe~QRLG---~eViAVDrY~~---APA----------------mqVA-hrs---~ 57 (394)
T COG0027 10 PQATKVMLLGSGE-LG-----KEVAIEAQRLG---VEVIAVDRYAN---APA----------------MQVA-HRS---Y 57 (394)
T ss_pred CCCeEEEEecCCc-cc-----hHHHHHHHhcC---CEEEEecCcCC---Chh----------------hhhh-hhe---e
Confidence 3457899887664 23 46778899887 58887874322 111 1100 000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCccc
Q 012492 140 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLM 175 (462)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~ 175 (462)
..++.-...|+..+++.|||.||-.-...
T Consensus 58 -------Vi~MlD~~al~avv~rekPd~IVpEiEAI 86 (394)
T COG0027 58 -------VIDMLDGDALRAVVEREKPDYIVPEIEAI 86 (394)
T ss_pred -------eeeccCHHHHHHHHHhhCCCeeeehhhhh
Confidence 01233344667789999999998665433
No 290
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=39.15 E-value=37 Score=30.83 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCC
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGD 93 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~ 93 (462)
|..+|++|--|+|-...|..||++|+++++.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 4567777777789999999999999998753
No 291
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=38.82 E-value=2e+02 Score=22.80 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=40.1
Q ss_pred CCceEEEEccCCHHHHHH-HhhccCCCCeEEeccchhHHHHHH--hcchhe-ecCC---hhhHHHHHHhCCCEEEecC
Q 012492 302 PIGQLIIICGRNRTLAST-LQSEEWKIPVKVRGFETQMEKWMG--ACDCII-TKAG---PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 302 ~~~~~lvv~G~~~~l~~~-~~~~~~~~~V~~~g~~~~~~~l~~--~aD~vV-~~sg---~~t~~EAla~G~PvI~~~~ 372 (462)
+++++..++..+.+-.+. .+.++. . ..++..+++. ..|+++ +.+. ...+.+++..|+++++-.+
T Consensus 24 ~~~~v~~v~d~~~~~~~~~~~~~~~----~---~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 24 PDFEVVAVCDPDPERAEAFAEKYGI----P---VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHTTS----E---EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred CCcEEEEEEeCCHHHHHHHHHHhcc----c---chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 567777788887643333 333332 2 2345677887 567654 3322 5667889999999988654
No 292
>PRK05569 flavodoxin; Provisional
Probab=38.77 E-value=73 Score=26.48 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
|+||+|+..|..|.....|.+|++.+++.|. ++.+.+
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~---~v~~~~ 37 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGA---EVTIKH 37 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCC---eEEEEE
Confidence 5688988876433556778889999987652 444443
No 293
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=38.46 E-value=1.3e+02 Score=30.14 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=25.8
Q ss_pred HHHHHHhcchheecCC---------------hhhHHHHHHhCCCEEEecCC
Q 012492 338 MEKWMGACDCIITKAG---------------PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 338 ~~~l~~~aD~vV~~sg---------------~~t~~EAla~G~PvI~~~~~ 373 (462)
+-..+..||++|..+| ++.+.=|-..++|++.....
T Consensus 83 il~~l~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~s 133 (385)
T COG2327 83 ILSALGKADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQS 133 (385)
T ss_pred HHHHhhhCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCCEEEEecc
Confidence 5567789999997665 22234455699999998875
No 294
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.00 E-value=31 Score=26.92 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=23.4
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEE
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVT 196 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~ 196 (462)
.++|+||+...+.++-..+.++......++|++.
T Consensus 47 ~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 4689999888877776566555433235899875
No 295
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=37.99 E-value=3.8e+02 Score=26.67 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=63.0
Q ss_pred HHHHHcCCC--CCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH-HHHHHHh--hc--c-----
Q 012492 257 NLRLELQMD--PILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR-TLASTLQ--SE--E----- 324 (462)
Q Consensus 257 ~~r~~l~l~--~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-~l~~~~~--~~--~----- 324 (462)
...+++|++ ++..+|-++. .....+..++..+ .+. ...+++++--|... .+.+.+. .+ +
T Consensus 169 ~~~~~lg~~~~~~~~~vSLF~--Ye~~al~~ll~~~----~~~---~~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~~~~ 239 (371)
T TIGR03837 169 ALLRRLGVGPEPDALLVSLFC--YENAALPALLDAL----AQS---GSPVHLLVPEGRALAAVAAWLGDALLAAGDVHRR 239 (371)
T ss_pred HHHHHcCCCCCCCCeEEEEEe--cCChhHHHHHHHH----HhC---CCCeEEEecCCccHHHHHHHhCccccCCcccccc
Confidence 456678885 3444443332 2222244444443 221 12356666556553 2333331 11 1
Q ss_pred CCCCeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 325 WKIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 325 ~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
..-.+++++|+ ++..+++-+||+=+.++. -+..-|.-+|+|.|=-.++
T Consensus 240 g~L~~~~LPf~~Q~~yD~LLW~cD~NfVRGE-DSFVRAqWAgkPfvWhIYP 289 (371)
T TIGR03837 240 GALTVAVLPFVPQDDYDRLLWACDLNFVRGE-DSFVRAQWAGKPFVWHIYP 289 (371)
T ss_pred CceEEEEcCCCChhhHHHHHHhChhcEeech-hHHHHHHHcCCCceeeccc
Confidence 12346778887 789999999999777654 5789999999999976654
No 296
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=37.90 E-value=1e+02 Score=26.99 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=22.0
Q ss_pred hhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEE
Q 012492 162 EYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 162 ~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~ 197 (462)
-+.||||+.+++|.... .+|.. .+++|++++
T Consensus 64 Gf~PDvI~~H~GWGe~L---flkdv--~P~a~li~Y 94 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETL---FLKDV--FPDAPLIGY 94 (171)
T ss_pred CCCCCEEEEcCCcchhh---hHHHh--CCCCcEEEE
Confidence 56899999999987543 33322 368998875
No 297
>PLN00203 glutamyl-tRNA reductase
Probab=37.86 E-value=3.3e+02 Score=28.61 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=24.5
Q ss_pred hhHHHHHHhcchheecCC---hhh---HHHHHHh-----CCCEEEecCC
Q 012492 336 TQMEKWMGACDCIITKAG---PGT---IAEALIR-----GLPIILNDYI 373 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg---~~t---~~EAla~-----G~PvI~~~~~ 373 (462)
++..+.+..||++|+..+ +.. .++.+.. |.|.++.|..
T Consensus 321 ~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 321 DEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred hhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 467788999999886533 211 2333321 5799999974
No 298
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=37.64 E-value=3.2e+02 Score=27.51 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=52.2
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCC--HHHHHHHhhccCCCCeEEeccc--hhHHHHH
Q 012492 267 ILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRN--RTLASTLQSEEWKIPVKVRGFE--TQMEKWM 342 (462)
Q Consensus 267 ~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~--~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~ 342 (462)
+.+.|.+-+.+.|. ...+..+++.|.+ ++|+.++++.+... .++.++. .+....+.+.++- ..+..++
T Consensus 49 ~~~~iW~Ha~s~Ge---~~~~~~l~~~l~~---~~~~~~i~~t~~t~~~~~~~~~~--~~~~~~~~~~P~d~~~~~~~~l 120 (425)
T PRK05749 49 KGPLIWFHAVSVGE---TRAAIPLIRALRK---RYPDLPILVTTMTPTGSERAQAL--FGDDVEHRYLPYDLPGAVRRFL 120 (425)
T ss_pred CCCeEEEEeCCHHH---HHHHHHHHHHHHH---hCCCCcEEEeCCCccHHHHHHHh--cCCCceEEEecCCcHHHHHHHH
Confidence 34557777777772 2333445555544 25677766655333 2222221 1111234444442 3445555
Q ss_pred Hh--cchheecC---ChhhHHHHHHhCCCEEEec
Q 012492 343 GA--CDCIITKA---GPGTIAEALIRGLPIILND 371 (462)
Q Consensus 343 ~~--aD~vV~~s---g~~t~~EAla~G~PvI~~~ 371 (462)
+. -|++++.. .++.+..+-..|+|+++.+
T Consensus 121 ~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 121 RFWRPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred HhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 43 47777542 3666777788899999865
No 299
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=37.51 E-value=96 Score=27.74 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=24.8
Q ss_pred HhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 161 MEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 161 ~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
....||+||...+.....++.-+.. .+||+|.++
T Consensus 124 ~~~~Pdlviv~~~~~~~~ai~Ea~~----l~IP~I~i~ 157 (193)
T cd01425 124 MFRLPDLVIVLDPRKEHQAIREASK----LGIPVIAIV 157 (193)
T ss_pred cccCCCEEEEeCCccchHHHHHHHH----cCCCEEEEe
Confidence 3457999999998776654445544 489999865
No 300
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=36.58 E-value=61 Score=31.41 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=28.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
||++|+++--|-|-.+.|.++|-++.++|. .+.++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~---rtLlv 35 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGK---RTLLV 35 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS----EEEE
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCC---CeeEe
Confidence 799999988888999999999999999874 44444
No 301
>PRK09004 FMN-binding protein MioC; Provisional
Probab=36.39 E-value=68 Score=27.22 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=23.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
|.||.|+.++..|-....|..|++.+.+.|.
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~ 31 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAGF 31 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcCC
Confidence 5689999887633556667788899887764
No 302
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=36.38 E-value=4.9e+02 Score=26.63 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=46.3
Q ss_pred hhhHHHHHHhCCCEEEecCC---CCccccchHHHHH--CCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc
Q 012492 354 PGTIAEALIRGLPIILNDYI---PGQEKGNVPYVVD--NGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPE 428 (462)
Q Consensus 354 ~~t~~EAla~G~PvI~~~~~---~~~~~~n~~~l~~--~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~ 428 (462)
|..+.=....|+|+-....+ .+-+..+++.+.. .|. .|...+.+.+++.+ |.+..+++.++..+ -+|
T Consensus 256 GaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGM----GDv~sLvEk~~~~~--d~e~a~~~~~kl~~--g~F 327 (451)
T COG0541 256 GAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGM----GDVLSLIEKAEEVV--DEEEAEKLAEKLKK--GKF 327 (451)
T ss_pred hHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCc----ccHHHHHHHHHHhh--hHHHHHHHHHHHHh--CCC
Confidence 55556667788888877654 1222223333332 132 36667777777776 44555555544333 248
Q ss_pred HHHHHHHHHHHHH
Q 012492 429 AVVDIVKDIHDLA 441 (462)
Q Consensus 429 ~~~~ia~~i~~l~ 441 (462)
..+++.++++++-
T Consensus 328 tL~Df~~Ql~~m~ 340 (451)
T COG0541 328 TLEDFLEQLEQMK 340 (451)
T ss_pred CHHHHHHHHHHHH
Confidence 8888888888744
No 303
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=36.18 E-value=1.2e+02 Score=23.94 Aligned_cols=68 Identities=13% Similarity=0.387 Sum_probs=37.9
Q ss_pred eEEEEccCCHH---HHHHHhhc--cCCCCeEEeccc-hhHHHHHHhcchheecCC-----hhhHHHHHHhCCCEEEecC
Q 012492 305 QLIIICGRNRT---LASTLQSE--EWKIPVKVRGFE-TQMEKWMGACDCIITKAG-----PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 305 ~~lvv~G~~~~---l~~~~~~~--~~~~~V~~~g~~-~~~~~l~~~aD~vV~~sg-----~~t~~EAla~G~PvI~~~~ 372 (462)
+++++|..+-. +.++.++. .....+.+..+. .+..+++..+|+++.-+. +..--.+--.|+||-++|.
T Consensus 3 ~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~DvvLlGPQv~y~~~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 3 KILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYIDNADVVLLGPQVRYMLKQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhhcCCEEEEChHHHHHHHHHHHHhcccCCCeEEeCH
Confidence 35566666542 23333322 122344444443 678888999999887543 2222224456789999874
No 304
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=36.18 E-value=31 Score=26.90 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=31.3
Q ss_pred eEEEEccCCH--------HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecC
Q 012492 305 QLIIICGRNR--------TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKA 352 (462)
Q Consensus 305 ~~lvv~G~~~--------~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~s 352 (462)
+++++||.+- .+++.+++++++..+... .++++..+...+|++|+..
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~-~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQC-AVDEIKALTDGADIIVTST 57 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeE-EecccccCCCcccEEEEeh
Confidence 6788999874 245566666665333322 2356778889999999854
No 305
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=35.79 E-value=1.2e+02 Score=29.17 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=15.8
Q ss_pred HHHHHHHHhhCCCEEEECCc
Q 012492 154 KEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~ 173 (462)
..+.+.+++++||+|++.+.
T Consensus 155 ~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 155 AQVLDVVEESGAELVVLARY 174 (286)
T ss_pred HHHHHHHHHhCcCEEEEeCh
Confidence 34567899999999988764
No 306
>PRK07308 flavodoxin; Validated
Probab=35.40 E-value=80 Score=26.54 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
|+||.|+..+.-|.....|.+|++.|.+.|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g~ 31 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELGH 31 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCCC
Confidence 4578888877633555568899999987764
No 307
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.39 E-value=62 Score=30.39 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=29.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+|.+. +--|-|..+.+.+||.+|.++| ..|.++|.
T Consensus 1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G---~rvlliD~ 36 (267)
T cd02032 1 MVLAVY-GKGGIGKSTTSSNLSVALAKRG---KKVLQIGC 36 (267)
T ss_pred CEEEEe-cCCCCCHHHHHHHHHHHHHHCC---CcEEEEec
Confidence 678888 4566799999999999999887 47777774
No 308
>PLN02735 carbamoyl-phosphate synthase
Probab=35.35 E-value=42 Score=38.75 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=28.9
Q ss_pred CCCeEEEEecCC-Cch----HHHHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 61 RTKNVLILMSDT-GGG----HRASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 61 ~~~kIli~~~~~-G~G----h~~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
.++||||+++|. .-| +...+..++++|++.| ++++++|..+
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G---~~Vi~vd~np 67 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEG---YEVVLINSNP 67 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcC---CEEEEEeCCc
Confidence 468999998663 123 3355778999999987 4778787543
No 309
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=35.27 E-value=78 Score=29.51 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=28.4
Q ss_pred CCeEEEEecC-CCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~-~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|++|.++.++ -|.|-...+..||.+|.++|. .+.+.|.
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~---~vl~iD~ 39 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQ---KPLCIDT 39 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCC---CEEEEEC
Confidence 5677777654 567888889999999998874 5566653
No 310
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=35.24 E-value=72 Score=29.99 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+||.-+++--|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 1 m~~iIav~~KGGVGKTT~~~nLA~~la~~G---~kVLliD~ 38 (270)
T PRK13185 1 MALVLAVYGKGGIGKSTTSSNLSAAFAKLG---KKVLQIGC 38 (270)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEec
Confidence 335443345567899999999999999886 47788874
No 311
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=35.11 E-value=65 Score=28.35 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=21.4
Q ss_pred CeEEEEecCCCchHHHH-HHHHHHHHhhhcC
Q 012492 63 KNVLILMSDTGGGHRAS-AEAIRDAFKIEFG 92 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~-a~aLa~~L~~~g~ 92 (462)
|||+|+..+. .|+... |..|++.|.. |+
T Consensus 1 MkilIvY~S~-~G~T~~iA~~Ia~~l~~-g~ 29 (177)
T PRK11104 1 MKTLILYSSR-DGQTRKIASYIASELKE-GI 29 (177)
T ss_pred CcEEEEEECC-CChHHHHHHHHHHHhCC-CC
Confidence 6899998876 466666 7788888876 53
No 312
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=34.69 E-value=2.1e+02 Score=30.20 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=42.9
Q ss_pred eEEeccchhHHHHHH--hcchheecC---ChhhHHHHHHhCCCEEEecCC-----CC---c-cccchHHHHHCCceeeeC
Q 012492 329 VKVRGFETQMEKWMG--ACDCIITKA---GPGTIAEALIRGLPIILNDYI-----PG---Q-EKGNVPYVVDNGAGVFTR 394 (462)
Q Consensus 329 V~~~g~~~~~~~l~~--~aD~vV~~s---g~~t~~EAla~G~PvI~~~~~-----~~---~-~~~n~~~l~~~G~g~~~~ 394 (462)
.+++|..+....+++ .+|++|..- +.-.+-|+.-.|.|+|+++.. ++ . ....+..|+...-|.++.
T Consensus 284 aKvvGpls~ql~~IrsG~aDViVvDEqCir~Dileea~k~g~~vIat~~k~~~gLpD~Td~~~d~iV~~L~sg~~g~~ll 363 (772)
T COG1152 284 AKVVGPLSKQLKVIRSGKADVIVVDEQCIREDILEEASKLGIPVIATNEKGMLGLPDVTDEDVDEIVESLVSGEPGVVLL 363 (772)
T ss_pred hhhhchhhhhhhhhhcCCceEEEecccccchhHHHHHhccCCceEechhHHhcCCCccccCCHHHHHHHHhcCCCceeec
Confidence 445666544445554 578888754 366788899999999998752 11 1 111233444333677777
Q ss_pred CHHHHHH
Q 012492 395 SPKETAR 401 (462)
Q Consensus 395 ~~~~la~ 401 (462)
+++...+
T Consensus 364 d~~K~ge 370 (772)
T COG1152 364 DPLKAGE 370 (772)
T ss_pred chHHhhH
Confidence 6654433
No 313
>PRK14099 glycogen synthase; Provisional
Probab=34.58 E-value=64 Score=33.54 Aligned_cols=32 Identities=31% Similarity=0.277 Sum_probs=26.7
Q ss_pred CCCeEEEEec------CCCchHHHHHHHHHHHHhhhcCC
Q 012492 61 RTKNVLILMS------DTGGGHRASAEAIRDAFKIEFGD 93 (462)
Q Consensus 61 ~~~kIli~~~------~~G~Gh~~~a~aLa~~L~~~g~~ 93 (462)
..|||++++. -+| |-.-.+.+|.++|+++||+
T Consensus 2 ~~~~il~v~~E~~p~~k~g-gl~dv~~~lp~~l~~~g~~ 39 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTG-GLADVAGALPAALKAHGVE 39 (485)
T ss_pred CCcEEEEEEeccccccCCC-cHHHHHHHHHHHHHHCCCc
Confidence 3589999973 375 8889999999999999874
No 314
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=34.52 E-value=83 Score=27.22 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=27.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
||+||+.++.-|-...-|.-||..|++.|+ +|-+.|.
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~---qvdi~dl 37 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGI---QVDIQDL 37 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCC---eeeeeeh
Confidence 799999877533556677889999999874 5565654
No 315
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=34.29 E-value=92 Score=25.28 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=21.1
Q ss_pred CCeEEEE-ecCCCchHHHHH-HHHHHHHhhhcC
Q 012492 62 TKNVLIL-MSDTGGGHRASA-EAIRDAFKIEFG 92 (462)
Q Consensus 62 ~~kIli~-~~~~G~Gh~~~a-~aLa~~L~~~g~ 92 (462)
||||+++ .+++|..|...+ .+|.++-++.|+
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~ 34 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKW 34 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCC
Confidence 4676655 477887777654 467777777764
No 316
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=34.13 E-value=1.9e+02 Score=24.01 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=36.8
Q ss_pred ceEEEEccCCHH-HHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC-hh-hH-HHHHHhCCC--EEEecC
Q 012492 304 GQLIIICGRNRT-LASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG-PG-TI-AEALIRGLP--IILNDY 372 (462)
Q Consensus 304 ~~~lvv~G~~~~-l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg-~~-t~-~EAla~G~P--vI~~~~ 372 (462)
..-+.++++..+ ..+..+.+ ...++.+..+. ++.+++..+|++|+.+. ++ .+ -|.+..+.+ -++++.
T Consensus 36 ~~~i~i~nRt~~ra~~l~~~~-~~~~~~~~~~~-~~~~~~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 36 AKEITIVNRTPERAEALAEEF-GGVNIEAIPLE-DLEEALQEADIVINATPSGMPIITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp SSEEEEEESSHHHHHHHHHHH-TGCSEEEEEGG-GHCHHHHTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHc-CccccceeeHH-HHHHHHhhCCeEEEecCCCCcccCHHHHHHHHhhhhceecc
Confidence 343556777753 33333333 23457777664 67789999999986443 22 22 334444443 266665
No 317
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=34.05 E-value=68 Score=30.27 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
||.|.|. +--|-|-.+.+.+||-+|.++| ..|.++|.
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G---~rVllvD~ 37 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMG---NKILLVGC 37 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhC---CCeEEEec
Confidence 4567777 6677899999999999999987 47777764
No 318
>PRK09932 glycerate kinase II; Provisional
Probab=33.88 E-value=1.8e+02 Score=29.10 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=34.2
Q ss_pred hhHHHHHHhcchheecCC------------hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCce
Q 012492 336 TQMEKWMGACDCIITKAG------------PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAG 390 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg------------~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g 390 (462)
-++.+.++.||++|+--| ..+.--|-..++|+|+.--. -..+...+.+.|..
T Consensus 276 ~~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~---~~~~~~~~~~~g~~ 339 (381)
T PRK09932 276 VNLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV---LGDGVEVVHQYGID 339 (381)
T ss_pred cChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecc---cCCChHHHHhcCce
Confidence 467899999999997433 23344577889999997421 12234456667753
No 319
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=33.58 E-value=61 Score=25.18 Aligned_cols=46 Identities=24% Similarity=0.376 Sum_probs=27.6
Q ss_pred eEEEEccCCHH--------HHHHHhhccCCCCeEEec-cchhHHHHHHhcchheecC
Q 012492 305 QLIIICGRNRT--------LASTLQSEEWKIPVKVRG-FETQMEKWMGACDCIITKA 352 (462)
Q Consensus 305 ~~lvv~G~~~~--------l~~~~~~~~~~~~V~~~g-~~~~~~~l~~~aD~vV~~s 352 (462)
+++++||.+-. +++.+++.+.+ +.+.. ...++..+...+|++++.+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~--~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP--VELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe--EEEEEecHHHHhhhcCCCCEEEECC
Confidence 57889998852 23334444443 33333 2346666667889988865
No 320
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=33.51 E-value=1.2e+02 Score=22.62 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
.+.+++++-+.| .|..+-..+|+.|.++| +.|+..|..
T Consensus 15 ~k~~v~i~HG~~-eh~~ry~~~a~~L~~~G---~~V~~~D~r 52 (79)
T PF12146_consen 15 PKAVVVIVHGFG-EHSGRYAHLAEFLAEQG---YAVFAYDHR 52 (79)
T ss_pred CCEEEEEeCCcH-HHHHHHHHHHHHHHhCC---CEEEEECCC
Confidence 467888888885 99999999999999986 678888864
No 321
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=33.43 E-value=59 Score=29.55 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=24.4
Q ss_pred HHHHHHhh--CCCEEEECCcccchH-HHHHHHHcCCCCCCeEEEEe
Q 012492 156 VEAGLMEY--KPDIIISVHPLMQHI-PLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 156 l~~~l~~~--kPDvVi~~~~~~~~~-~~~~~~~~~~~~~iP~v~~~ 198 (462)
+.+.+++. .||+|++++--..+. -+.+|...|...++|+|.+-
T Consensus 83 l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 83 LLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 34445554 499999998432221 01233444555689998753
No 322
>PRK10037 cell division protein; Provisional
Probab=33.41 E-value=75 Score=29.56 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=29.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
||.|.|...--|-|-.+.+.+||.+|.++|. .|.++|.
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~---rVLlID~ 38 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGE---NVLVIDA 38 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCC---cEEEEeC
Confidence 4455566655667999999999999999873 7787764
No 323
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=33.22 E-value=1.4e+02 Score=27.01 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=15.1
Q ss_pred HHHHHHHhhCCCEEEECCc
Q 012492 155 EVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 155 ~l~~~l~~~kPDvVi~~~~ 173 (462)
.+.+.+++++||+|++.+.
T Consensus 69 ~~~~~l~~~~~Dliv~agy 87 (207)
T PLN02331 69 ELVDALRGAGVDFVLLAGY 87 (207)
T ss_pred HHHHHHHhcCCCEEEEeCc
Confidence 4557799999999988763
No 324
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=33.21 E-value=1.1e+02 Score=25.29 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=25.6
Q ss_pred CeEEEEe--cCCCchHHHHHHHHHHHHhhhcCCceEEEE
Q 012492 63 KNVLILM--SDTGGGHRASAEAIRDAFKIEFGDEYRIFV 99 (462)
Q Consensus 63 ~kIli~~--~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v 99 (462)
||++|+. ++-|+-....++.+|.++.+.||+.+.++.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf 39 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFF 39 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEE
Confidence 6788775 445555567788999999998875334443
No 325
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=33.18 E-value=61 Score=29.83 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=26.1
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
+|+|.+.++|.|-...+..|++.|+++|.
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~ 32 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGK 32 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 58888889999999999999999999874
No 326
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=32.97 E-value=2e+02 Score=28.44 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=55.4
Q ss_pred CceEEEEccCCHHH-HHHHhhccCCCCeEEeccchhHHHHHHhcch--heecC------ChhhHHHHHHhCCCEEEecCC
Q 012492 303 IGQLIIICGRNRTL-ASTLQSEEWKIPVKVRGFETQMEKWMGACDC--IITKA------GPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 303 ~~~~lvv~G~~~~l-~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~--vV~~s------g~~t~~EAla~G~PvI~~~~~ 373 (462)
+++++.++..+.+- ++..++++ +. ...++.++++..|+ ++.++ ....+.+|+..|+.|++=...
T Consensus 27 ~~eLvaV~d~~~erA~~~A~~~g----i~---~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPl 99 (343)
T TIGR01761 27 RFELAGILAQGSERSRALAHRLG----VP---LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPL 99 (343)
T ss_pred CcEEEEEEcCCHHHHHHHHHHhC----CC---ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCC
Confidence 57777788877642 23333333 22 22467777776665 33321 256678999999999986544
Q ss_pred CCcc-ccchHHHHHCCceeeeCCHHHHHHHHHHHh
Q 012492 374 PGQE-KGNVPYVVDNGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 374 ~~~~-~~n~~~l~~~G~g~~~~~~~~la~~i~~ll 407 (462)
...+ ..-.+...+.|.-+.+..-.....++.+++
T Consensus 100 a~~Ea~el~~~A~~~g~~l~v~~f~p~~~~vr~~i 134 (343)
T TIGR01761 100 HPRDIQDLLRLAERQGRRYLVNTFYPHLPAVRRFI 134 (343)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecCHHHHHHHHHH
Confidence 3211 112223334566555554444556677777
No 327
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=32.96 E-value=3.6e+02 Score=25.19 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=22.9
Q ss_pred hHHHHHHhcchheecCC--------------hhhHHHHHHhCCCEEEec
Q 012492 337 QMEKWMGACDCIITKAG--------------PGTIAEALIRGLPIILND 371 (462)
Q Consensus 337 ~~~~l~~~aD~vV~~sg--------------~~t~~EAla~G~PvI~~~ 371 (462)
+..+.+..||+++..+| -..+.|+...|+|++-+.
T Consensus 75 ~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~S 123 (250)
T TIGR02069 75 NAIALLSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTS 123 (250)
T ss_pred HHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEcc
Confidence 45678888898877655 122456667787776554
No 328
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=32.75 E-value=58 Score=33.50 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
|++|+|.+.++|.|-...+.+|+++|+++|.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~ 33 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGL 33 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 5568888888999999999999999999973
No 329
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=32.63 E-value=1.2e+02 Score=30.94 Aligned_cols=33 Identities=21% Similarity=0.021 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
++||||++.++. +..+|+.+|++.+. ..++++.
T Consensus 3 ~~~kvLviG~g~------rehal~~~~~~~~~-~~~~~~~ 35 (426)
T PRK13789 3 VKLKVLLIGSGG------RESAIAFALRKSNL-LSELKVF 35 (426)
T ss_pred CCcEEEEECCCH------HHHHHHHHHHhCCC-CCEEEEE
Confidence 458999986543 34568899987642 3355543
No 330
>CHL00067 rps2 ribosomal protein S2
Probab=32.54 E-value=2.8e+02 Score=25.58 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=23.7
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
..||+||...+.....+..-+.. .+||+|.++
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~----l~IPvIaiv 191 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRK----LGIPTISIL 191 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHH----cCCCEEEEE
Confidence 46999999998876654555554 489999765
No 331
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=32.51 E-value=64 Score=30.51 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
||+|+|+++--|-|-.+.+.+||..|...+ .+.+.|
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~~----~~~l~D 36 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDKY----KLVLAD 36 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhcccc----ceEEEe
Confidence 789999998777799999999999998763 555554
No 332
>PRK10342 glycerate kinase I; Provisional
Probab=32.39 E-value=2e+02 Score=28.77 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=34.2
Q ss_pred hhHHHHHHhcchheecCC------------hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCce
Q 012492 336 TQMEKWMGACDCIITKAG------------PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAG 390 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg------------~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g 390 (462)
-++.+.++.||++|+--| ..+.--|-..++|+|+.--. -..+...+.+.|..
T Consensus 276 ~~l~~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~---~~~~~~~~~~~g~~ 339 (381)
T PRK10342 276 LNLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS---LTDDVGVVHQHGID 339 (381)
T ss_pred cCHHHHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecc---cCCChHHHHhcCce
Confidence 467899999999997433 33344577889999997421 11233456666753
No 333
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=32.34 E-value=44 Score=29.17 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=26.3
Q ss_pred HHHHhcchhee-----c--CChhhHHH---HHHhCCCEEEecCC
Q 012492 340 KWMGACDCIIT-----K--AGPGTIAE---ALIRGLPIILNDYI 373 (462)
Q Consensus 340 ~l~~~aD~vV~-----~--sg~~t~~E---Ala~G~PvI~~~~~ 373 (462)
..+..||++|. + .-++|+.| |.+.|+|++.+...
T Consensus 64 ~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~~~d 107 (172)
T COG3613 64 KLIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAYRKD 107 (172)
T ss_pred HHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEEeec
Confidence 68899999874 2 12568888 78999999998753
No 334
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=32.30 E-value=65 Score=28.44 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=24.7
Q ss_pred HHHHHhCCCEEEecCCC------CccccchHHHHHCCceeeeCCH
Q 012492 358 AEALIRGLPIILNDYIP------GQEKGNVPYVVDNGAGVFTRSP 396 (462)
Q Consensus 358 ~EAla~G~PvI~~~~~~------~~~~~n~~~l~~~G~g~~~~~~ 396 (462)
++|+-.++|+++.|.-+ ..-..|...|.+.|.-++-+..
T Consensus 106 a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 106 ALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred HHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 44433489999999642 1123478888888876654443
No 335
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=32.25 E-value=62 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=21.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
|||+|+..+.-|-....|..|++.|...++
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~ 30 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGH 30 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCe
Confidence 689999888632445568889999987653
No 336
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=31.68 E-value=1.8e+02 Score=29.90 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=37.4
Q ss_pred EccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecC
Q 012492 309 ICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 309 v~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
.||.-..+ +.++....+|+++.--=+.-.+++..|=|-|...+ +=.||+.||+|++....
T Consensus 193 l~gkkqg~---lt~~~~~~r~~ll~edfnpisll~~~dkvy~~ts~-mgfeall~~~~~~~fg~ 252 (671)
T COG3563 193 LCGKKQGY---LTQLSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQ-MGFEALLCGKPLTTFGL 252 (671)
T ss_pred hcCcccch---hhhhccCceEEEecccCChHHHHHhcceeEEeecc-ccHHHHhcCCceeeecc
Confidence 45654432 33333456777764322334789999976554332 23899999999998764
No 337
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=31.48 E-value=83 Score=23.87 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=32.0
Q ss_pred eEEEEccCCHH--------HHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecC
Q 012492 305 QLIIICGRNRT--------LASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 305 ~~lvv~G~~~~--------l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
+++++||.+.. +++.+++.+....+...+. ++.. ..+|++++..--..-+.......|+|....
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~-~~~~---~~~Dliitt~~l~~~~~~~~~~~~vi~v~~ 73 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAI-DELP---SDADLVVTHASLTDRAKKKAPQAQHLSVDN 73 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcch-hhCC---CCCCEEEEChHHHHHHHhcCCCCeEEEEec
Confidence 35777877641 2233333333333333332 2222 678999986542111111223789988765
No 338
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=31.46 E-value=1.6e+02 Score=21.92 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=33.2
Q ss_pred cCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcc
Q 012492 210 HPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRA 251 (462)
Q Consensus 210 ~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~ 251 (462)
....|.+++......+.+++.|+ ++|..++...++..+.+
T Consensus 16 ~~~~~~iFt~D~~~~~~~~~~G~--~~V~yLPLAa~~~~~~p 55 (79)
T PF12996_consen 16 ANSYDYIFTFDRSFVEEYRNLGA--ENVFYLPLAANPERFRP 55 (79)
T ss_pred CCCCCEEEEECHHHHHHHHHcCC--CCEEEccccCCHHHhCc
Confidence 45678999999999999988886 48999999888887765
No 339
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=31.29 E-value=2e+02 Score=28.79 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=33.8
Q ss_pred hhHHHHHHhcchheecCC------------hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCce
Q 012492 336 TQMEKWMGACDCIITKAG------------PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAG 390 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg------------~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g 390 (462)
-++.+.++.||++|+--| ..+.--|-..++|+|+.-- .-..+...+.+.|..
T Consensus 275 ~~l~~~l~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G---~v~~~~~~~~~~g~~ 338 (375)
T TIGR00045 275 LDLEQKIKDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAG---SLGDGVDVLPQHGID 338 (375)
T ss_pred hCHHHHhcCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEec---ccCCChHHHHhcCcc
Confidence 367899999999997433 2333447778999998732 112244456666753
No 340
>PRK13556 azoreductase; Provisional
Probab=31.20 E-value=77 Score=28.59 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=25.9
Q ss_pred CCeEEEEecCCCchHHHH----HHHHHHHHhhhcCCceEEEEEeccc
Q 012492 62 TKNVLILMSDTGGGHRAS----AEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~----a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
|||||++.++.=.|+.+. +.++++.+++.++ +.+|.+.|+.+
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~-~~~V~~~DL~~ 46 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHP-NDTVVELDLYK 46 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCC-CCeEEEEeCCC
Confidence 689999987751133343 3345556666544 45888888764
No 341
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=30.98 E-value=2.6e+02 Score=24.36 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=28.6
Q ss_pred CeEEeccc-hhHHHHHHhcchheecCC-hhhHHHHHHhCCCEEEecCC
Q 012492 328 PVKVRGFE-TQMEKWMGACDCIITKAG-PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 328 ~V~~~g~~-~~~~~l~~~aD~vV~~sg-~~t~~EAla~G~PvI~~~~~ 373 (462)
+|.+.... +++.+.++.||++|+..+ +. ++..-...-..++.+..
T Consensus 70 ~V~v~~r~~~~l~~~l~~aDiVIsat~~~~-ii~~~~~~~~~viIDla 116 (168)
T cd01080 70 TVTVCHSKTKNLKEHTKQADIVIVAVGKPG-LVKGDMVKPGAVVIDVG 116 (168)
T ss_pred EEEEEECCchhHHHHHhhCCEEEEcCCCCc-eecHHHccCCeEEEEcc
Confidence 35554443 678899999999998665 33 33333344457777764
No 342
>PRK07952 DNA replication protein DnaC; Validated
Probab=30.87 E-value=2e+02 Score=26.88 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccCCCCCCCcccccch----hhhccCCCCCCeEEEEecCCCchHHHHHHHHHHHHhhhc
Q 012492 16 EKVLQRVYGNHSTSSSSNLGCSFDSDDDCEEDDESTV----ELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g 91 (462)
...+++.++.++- ...+..|.|++-....++...-. .+.. +.....+-++++++.|.|-.+-+.+|+++|.+.|
T Consensus 50 q~~~~~~~~~s~i-~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~-~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g 127 (244)
T PRK07952 50 AMKMQRTFNRSGI-RPLHQNCSFENYRVECEGQMNALSKARQYVE-EFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG 127 (244)
T ss_pred HHHHHHHHHHcCC-CccccCCccccccCCCchHHHHHHHHHHHHH-hhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3445566765553 23456677776654332221111 1111 1111224678888888999999999999999876
Q ss_pred C
Q 012492 92 G 92 (462)
Q Consensus 92 ~ 92 (462)
.
T Consensus 128 ~ 128 (244)
T PRK07952 128 K 128 (244)
T ss_pred C
Confidence 3
No 343
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=30.83 E-value=4.1e+02 Score=24.10 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=23.3
Q ss_pred hhHHHHHHhcchheecCC--------------hhhHHHHHHhCCCEEEec
Q 012492 336 TQMEKWMGACDCIITKAG--------------PGTIAEALIRGLPIILND 371 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg--------------~~t~~EAla~G~PvI~~~ 371 (462)
+++.+.+..||+++..+| -..+.++...|+|++-+.
T Consensus 75 ~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~S 124 (217)
T cd03145 75 PEVVARLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTS 124 (217)
T ss_pred HHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEcc
Confidence 466778899998887655 112444566777777554
No 344
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=30.38 E-value=93 Score=29.45 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=29.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|++|.|. +--|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G---~rVLliD~ 37 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESG---KKVLVVGC 37 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCC---CEEEEEee
Confidence 4566666 5566799999999999999987 47788874
No 345
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=30.38 E-value=4.7e+02 Score=24.67 Aligned_cols=41 Identities=5% Similarity=-0.032 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 012492 397 KETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 397 ~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~ 439 (462)
+.+.+++.+.+ ++|+..+.+.+...... ....++..+.+.+
T Consensus 220 ~~l~~a~~~~~-~~pe~~~~~~~~g~~~~-~~~~~~~~~~l~~ 260 (274)
T PF03401_consen 220 DKLADAIKKAL-EDPEFQEFLEKMGLEPV-YMDGEEFDAFLAE 260 (274)
T ss_dssp HHHHHHHHHHH-T-HHHHHHHHHHTEEEE-CESHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHCCCcCC-CCCHHHHHHHHHH
Confidence 34556666777 79999888877665443 3333444444433
No 346
>PRK06988 putative formyltransferase; Provisional
Probab=30.32 E-value=74 Score=30.93 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=14.4
Q ss_pred HHHHHHHhhCCCEEEECC
Q 012492 155 EVEAGLMEYKPDIIISVH 172 (462)
Q Consensus 155 ~l~~~l~~~kPDvVi~~~ 172 (462)
.+.+.+++++||++++.+
T Consensus 68 ~~~~~l~~~~~Dliv~~~ 85 (312)
T PRK06988 68 ELRAAVAAAAPDFIFSFY 85 (312)
T ss_pred HHHHHHHhcCCCEEEEeh
Confidence 345679999999998876
No 347
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=30.18 E-value=85 Score=25.70 Aligned_cols=34 Identities=9% Similarity=-0.026 Sum_probs=21.1
Q ss_pred CeEEEEecCCC---chHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 63 KNVLILMSDTG---GGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 63 ~kIli~~~~~G---~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
|||+|+..+.. -.+ -...+|+.+.+++|| ++++.
T Consensus 1 Mki~fvmDpi~~i~~~k-DTT~alm~eAq~RGh---ev~~~ 37 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYK-DTTFALMLEAQRRGH---EVFYY 37 (119)
T ss_dssp -EEEEEES-GGG--TTT--HHHHHHHHHHHTT----EEEEE
T ss_pred CeEEEEeCCHHHCCCCC-ChHHHHHHHHHHCCC---EEEEE
Confidence 79999986541 122 345678999999986 55654
No 348
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.17 E-value=91 Score=28.52 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=23.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
.++|||++|+.| | ...+||.+|.+.| +.|+.+
T Consensus 7 ~k~VlItgcs~G-G---IG~ala~ef~~~G---~~V~At 38 (289)
T KOG1209|consen 7 PKKVLITGCSSG-G---IGYALAKEFARNG---YLVYAT 38 (289)
T ss_pred CCeEEEeecCCc-c---hhHHHHHHHHhCC---eEEEEE
Confidence 479999998875 3 2346899999886 566655
No 349
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=30.10 E-value=88 Score=29.53 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=29.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+.|.|. +--|-|-.+.+.+||-+|.++| ..|.++|.
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G---~rVLlID~ 37 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMG---KKVMVVGC 37 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCC---CcEEEEec
Confidence 4567777 5566789999999999999987 47788874
No 350
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=30.06 E-value=53 Score=29.60 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCCeEEEEecC----CCchHHHHHHHHHHHHhhh
Q 012492 61 RTKNVLILMSD----TGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 61 ~~~kIli~~~~----~G~Gh~~~a~aLa~~L~~~ 90 (462)
+||||++++++ + .||...|..+++.|...
T Consensus 1 ~~~~i~lfGGsFdP~H-~GHl~ia~~~~~~l~ld 33 (197)
T COG1057 1 KMKKIALFGGSFDPPH-YGHLLIAEEALDQLGLD 33 (197)
T ss_pred CCceEEEeccCCCCCC-HHHHHHHHHHHHhcCCC
Confidence 47899999865 5 69999999888887653
No 351
>PRK03202 6-phosphofructokinase; Provisional
Probab=30.05 E-value=5.3e+02 Score=25.16 Aligned_cols=44 Identities=7% Similarity=-0.090 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEec
Q 012492 152 YAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVIT 199 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~ 199 (462)
...++.+.+++++.|.+|..++..+......... .++|+|.+..
T Consensus 81 ~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e----~~i~vigiPk 124 (320)
T PRK03202 81 GRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE----HGIPVIGLPG 124 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh----cCCcEEEecc
Confidence 3456778899999999998887654322222221 3799987653
No 352
>PRK10637 cysG siroheme synthase; Provisional
Probab=30.00 E-value=6.3e+02 Score=25.99 Aligned_cols=47 Identities=13% Similarity=-0.055 Sum_probs=28.2
Q ss_pred CCCeEEeccchhHHHHHHhcchheecCC-----hhhHHHHHHhCCCEEEecCC
Q 012492 326 KIPVKVRGFETQMEKWMGACDCIITKAG-----PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 326 ~~~V~~~g~~~~~~~l~~~aD~vV~~sg-----~~t~~EAla~G~PvI~~~~~ 373 (462)
..++.+..-. -....+..+++++.-.. .....+|-..|+++-+.+.+
T Consensus 55 ~~~i~~~~~~-~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~ 106 (457)
T PRK10637 55 AGMLTLVEGP-FDESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAP 106 (457)
T ss_pred CCCEEEEeCC-CChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCc
Confidence 3466665322 12367788998776544 22334556778888877764
No 353
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=29.65 E-value=97 Score=28.44 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=28.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+.|.|.++--|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g---~~VlliD~ 38 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLG---EPVLAIDL 38 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCC---CcEEEEeC
Confidence 34666665667799999999999999886 47788874
No 354
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=29.37 E-value=1.1e+02 Score=26.81 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=28.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 65 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 65 Ili~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|.|++..-|.|-.+.+.+||..|.++| ..|.+.|.
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g---~~VlliD~ 35 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKG---KKVLLIDL 35 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT---S-EEEEEE
T ss_pred CEEEcCCCCccHHHHHHHHHhcccccc---cccccccc
Confidence 677887788899999999999999976 47777764
No 355
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=29.24 E-value=1e+02 Score=28.77 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=28.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|++|.|. +--|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G---~kVlliD~ 37 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMG---KKVMIVGC 37 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCC---CeEEEEEc
Confidence 4457776 5566799999999999999886 47788875
No 356
>PRK06851 hypothetical protein; Provisional
Probab=29.20 E-value=1.7e+02 Score=29.19 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=51.7
Q ss_pred cchHHHHHHHHhcCCCCCC-CCCCCcccCCCCCCCcccccchhhhccCCCCCCeEEEEecCCCchHHHHHHHHHHHHhhh
Q 012492 12 VSLTEKVLQRVYGNHSTSS-SSNLGCSFDSDDDCEEDDESTVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
-..++.+.++.|++..... ....+--|- +---..|-+.+...=.....|+.++.++.|.|-.+....+++++.++
T Consensus 166 ~~~~~~l~~~l~~~~~~~~~~g~~rh~F~----ga~Tp~G~~s~~~~l~~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~ 241 (367)
T PRK06851 166 NELTDELIQELFKGAPGKISKGKVRHLFL----GAITPKGAVDFVPSLTEGVKNRYFLKGRPGTGKSTMLKKIAKAAEER 241 (367)
T ss_pred HHHHHHHHHHHhccCcccccCCceeeeec----cccCCCcHHhhHHhHhcccceEEEEeCCCCCcHHHHHHHHHHHHHhC
Confidence 3468888999998865310 111111122 22223344433222224457899999999999999999999999999
Q ss_pred cCCceEEEEE
Q 012492 91 FGDEYRIFVK 100 (462)
Q Consensus 91 g~~~~~v~v~ 100 (462)
|-+ ++++.+
T Consensus 242 G~~-v~~~hC 250 (367)
T PRK06851 242 GFD-VEVYHC 250 (367)
T ss_pred CCe-EEEEeC
Confidence 743 455544
No 357
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=29.12 E-value=59 Score=30.00 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=19.1
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEE
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~ 197 (462)
+.+++|+||++|..+|-.....=..+|..-...++|+|.+
T Consensus 53 ~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI 92 (276)
T PF01993_consen 53 KMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVI 92 (276)
T ss_dssp HHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEE
T ss_pred HHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEE
Confidence 4578999999998887554331112221100038999854
No 358
>PRK01355 azoreductase; Reviewed
Probab=28.99 E-value=1.5e+02 Score=26.56 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=25.3
Q ss_pred CCeEEEEecCCC---ch-HHHHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 62 TKNVLILMSDTG---GG-HRASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 62 ~~kIli~~~~~G---~G-h~~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
||||+++.++.= +| ....+..+++.+++.++ ..++.+.|+.+
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~-~~~v~~~dL~~ 46 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNP-NDEIIILDLNE 46 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCC-CCeEEEEeCCC
Confidence 689999987651 12 22344566666776543 34677777643
No 359
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=28.93 E-value=97 Score=29.05 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=29.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+|.+. +--|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 1 ~~i~~~-gKGGVGKTT~~~nLA~~La~~g---~rVLliD~ 36 (268)
T TIGR01281 1 MILAVY-GKGGIGKSTTSSNLSVAFAKLG---KRVLQIGC 36 (268)
T ss_pred CEEEEE-cCCcCcHHHHHHHHHHHHHhCC---CeEEEEec
Confidence 678888 5566799999999999999886 47787775
No 360
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=28.92 E-value=1.3e+02 Score=26.91 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=27.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhh-cCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIE-FGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~-g~~~~~v~v~d~ 102 (462)
+.|+|+++.-|-|-.+.+.+||.+|.+. | ..|.++|.
T Consensus 36 ~vi~v~s~kgG~GkSt~a~nLA~~la~~~g---~~VLlvD~ 73 (207)
T TIGR03018 36 NLIMVTSSLPGEGKSFTAINLAISLAQEYD---KTVLLIDA 73 (207)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHHhcC---CeEEEEEC
Confidence 3455665556779999999999999864 5 36777764
No 361
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=28.85 E-value=1.3e+02 Score=28.32 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhCCCEEEECCc----ccchHHHHHHHHcCCCCCCeEEEEecC
Q 012492 152 YAKEVEAGLMEYKPDIIISVHP----LMQHIPLWVLKWQGLQKKVIFVTVITD 200 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~----~~~~~~~~~~~~~~~~~~iP~v~~~~d 200 (462)
.++-|...+++..||+|+|-.. .....+..++.+ .++|.+++..+
T Consensus 100 tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~----Lg~P~vt~v~~ 148 (256)
T PRK03359 100 TASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEI----LNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHH----hCCCceeeEEE
Confidence 3455667788889999997552 223344455554 48998887654
No 362
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=28.82 E-value=1.1e+02 Score=28.68 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.+.|+|+++.-|.|-.+.+.+||.+|.+.| ..|.++|.
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g---~~VllID~ 140 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLG---EKTLLIDA 140 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 445667777677899999999999999876 36777764
No 363
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=28.79 E-value=7.4e+02 Score=26.44 Aligned_cols=121 Identities=19% Similarity=0.177 Sum_probs=63.3
Q ss_pred ceEEEEccCCHH------HHHHHhhccCCCCeEEeccc---hhHHHHHH-----hcchheecCC---hhhHHHHHHhCCC
Q 012492 304 GQLIIICGRNRT------LASTLQSEEWKIPVKVRGFE---TQMEKWMG-----ACDCIITKAG---PGTIAEALIRGLP 366 (462)
Q Consensus 304 ~~~lvv~G~~~~------l~~~~~~~~~~~~V~~~g~~---~~~~~l~~-----~aD~vV~~sg---~~t~~EAla~G~P 366 (462)
..+.+++|.... ....+++++.+-.+.+.+-. +.+.++.. .++++|+-+| ...-.=|...-+|
T Consensus 411 ~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~p 490 (577)
T PLN02948 411 PLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLP 490 (577)
T ss_pred CeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCC
Confidence 345566676542 34556667777667776654 45555543 3578887666 1222334666899
Q ss_pred EEEecCCCCcccc--chHHHHHC--Cceee---eCCHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q 012492 367 IILNDYIPGQEKG--NVPYVVDN--GAGVF---TRSPKETARIVTEWFS-TKTDELKRMSENALKL 424 (462)
Q Consensus 367 vI~~~~~~~~~~~--n~~~l~~~--G~g~~---~~~~~~la~~i~~ll~-~d~~~~~~m~~~a~~~ 424 (462)
||..|...+.-.+ ..-.+++. |..+. ++....-+-...++|. .|++.++++.+...+.
T Consensus 491 vi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~~~~~~~~~~~~~~~~ 556 (577)
T PLN02948 491 VIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLLDKMEAYQEDM 556 (577)
T ss_pred EEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999985331111 11234444 53221 2333222222223332 5788777776654443
No 364
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=28.78 E-value=1.4e+02 Score=30.54 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCeEE-eccchhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEE
Q 012492 327 IPVKV-RGFETQMEKWMGACDCIITKAG----PGTIAEALIRGLPIIL 369 (462)
Q Consensus 327 ~~V~~-~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~ 369 (462)
.++.+ .|...+ .+...+|++|.++| .-.+.+|.+.|+|++.
T Consensus 53 ~~i~~~~g~~~~--~~~~~~d~vV~SPGi~~~~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 53 EGIEVELGSHDD--EDLAEFDLVVKSPGIPPTHPLVEAAKAAGIEIIG 98 (448)
T ss_pred cCceeecCccch--hccccCCEEEECCCCCCCCHHHHHHHHcCCcEEe
Confidence 45544 344433 88999999998877 3356778899999883
No 365
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=28.59 E-value=1.2e+02 Score=27.40 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHH----hhhcCCceEEEEEecccc
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAF----KIEFGDEYRIFVKDVCKE 105 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L----~~~g~~~~~v~v~d~~~~ 105 (462)
|+|||++..+. .|..+....|+++| ++.+| ..++...|+..+
T Consensus 1 MskvL~I~as~-~~~~S~S~~l~~~Fi~~yk~~~P-~dev~~~DL~~e 46 (202)
T COG1182 1 MSKVLVIKASP-LGENSVSRKLADEFIETYKEKHP-NDEVIERDLAAE 46 (202)
T ss_pred CceEEEEecCC-CccccHHHHHHHHHHHHHHHhCC-CCeEEEeecccC
Confidence 67899998775 35555555555555 56655 458888887755
No 366
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=28.48 E-value=41 Score=33.98 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=33.6
Q ss_pred hHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCC
Q 012492 337 QMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIP 374 (462)
Q Consensus 337 ~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~ 374 (462)
|..++.+.|.+=|.||. |-|..|+-.+|+|.|.++..+
T Consensus 493 DYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSG 534 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSG 534 (692)
T ss_pred CHHHHhccccccccccccCCCCCCchheEEeccccccccccc
Confidence 67889999999998885 789999999999999999753
No 367
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=28.35 E-value=67 Score=26.23 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhCCCEEEECCcccc
Q 012492 151 YYAKEVEAGLMEYKPDIIISVHPLMQ 176 (462)
Q Consensus 151 ~~~~~l~~~l~~~kPDvVi~~~~~~~ 176 (462)
.....|.+++++++||+|++..+...
T Consensus 87 ~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 87 ELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 34556778899999999999886544
No 368
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=28.17 E-value=1.4e+02 Score=21.98 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=33.0
Q ss_pred eEEEEccCCHH----HHHHHhhccCCCCeEEeccc--hhHHHH-HHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 305 QLIIICGRNRT----LASTLQSEEWKIPVKVRGFE--TQMEKW-MGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 305 ~~lvv~G~~~~----l~~~~~~~~~~~~V~~~g~~--~~~~~l-~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
+++++||.+.. +..++++.- .+..+.+.. .++..+ ...+|++++..- . . ..+.|++.....
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~--~~~~~v~~~~~~~~~~~~~~~~DlIitT~~-l---~--~~~~pvi~i~~~ 69 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLF--PEIEIIDVISLRELEEVDLDDYDLIISTVP-L---E--DTDKPVIVVSPI 69 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHC--CCceEEEEEeHHHHhhCcccCCCEEEEccc-c---C--CCCCCEEEECCC
Confidence 46778887753 334444321 122222222 344444 567899998653 1 1 457899876653
No 369
>PRK00784 cobyric acid synthase; Provisional
Probab=28.16 E-value=72 Score=33.19 Aligned_cols=30 Identities=7% Similarity=0.107 Sum_probs=26.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhc
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g 91 (462)
|++|+|.+.++|.|-...+.+|+++|+++|
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~~~G 31 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILARRG 31 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 456888888899999999999999999987
No 370
>PRK10818 cell division inhibitor MinD; Provisional
Probab=28.09 E-value=1.1e+02 Score=28.60 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=29.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+.|.|.++--|-|-.+.+.+||-+|.++| ..|.++|.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g---~~vllvD~ 39 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKG---KKTVVIDF 39 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CeEEEEEC
Confidence 34666666677899999999999999886 36777764
No 371
>PRK12342 hypothetical protein; Provisional
Probab=27.98 E-value=1.4e+02 Score=28.07 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhCCCEEEECCc----ccchHHHHHHHHcCCCCCCeEEEEecCC
Q 012492 152 YAKEVEAGLMEYKPDIIISVHP----LMQHIPLWVLKWQGLQKKVIFVTVITDL 201 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~----~~~~~~~~~~~~~~~~~~iP~v~~~~d~ 201 (462)
.++-|...+++.+||+|++-.. .....+..++.. .++|++++..+.
T Consensus 97 ta~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~----Lg~P~vt~v~~~ 146 (254)
T PRK12342 97 TAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGEL----LQLPVINAVSKI 146 (254)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHH----hCCCcEeeEEEE
Confidence 3455667788888999997552 223333445554 489998876543
No 372
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.47 E-value=1.2e+02 Score=26.48 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=25.1
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHHhhhc
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g 91 (462)
+++|||+|+..+ |.|-.+.+.-|++.|+.+|
T Consensus 3 ~~~mki~ITG~P-GvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 3 KMAMKIFITGRP-GVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred CcceEEEEeCCC-CccHHHHHHHHHHHHHhcC
Confidence 456899887643 4699999999999999985
No 373
>COG3911 Predicted ATPase [General function prediction only]
Probab=27.21 E-value=86 Score=26.94 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=20.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhc
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g 91 (462)
..||+.|++++-|+|..+ |.++|+++|
T Consensus 7 nR~~~fIltGgpGaGKTt----LL~aLa~~G 33 (183)
T COG3911 7 NRHKRFILTGGPGAGKTT----LLAALARAG 33 (183)
T ss_pred ccceEEEEeCCCCCcHHH----HHHHHHHcC
Confidence 346999999998877655 456777776
No 374
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=27.20 E-value=4.2e+02 Score=26.66 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=30.7
Q ss_pred HHHhCCCEEEecCCC------CccccchHHHHHCCceeeeC----------------CHHHHHHHHHHHh
Q 012492 360 ALIRGLPIILNDYIP------GQEKGNVPYVVDNGAGVFTR----------------SPKETARIVTEWF 407 (462)
Q Consensus 360 Ala~G~PvI~~~~~~------~~~~~n~~~l~~~G~g~~~~----------------~~~~la~~i~~ll 407 (462)
++++-+|+++.|..+ ..-..|...|.+.|..++-+ +++++.+.+.+.+
T Consensus 108 ~~~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g~~~~~~~i~~~v~~~~ 177 (390)
T TIGR00521 108 ALAASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKGRLAEPETIVKAAEREF 177 (390)
T ss_pred HHHhCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccccccCCCCCCHHHHHHHHHHHH
Confidence 445559999999832 11234888888887655432 4666666666665
No 375
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=27.19 E-value=1e+02 Score=29.49 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=28.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|||.|.. --|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 1 m~ia~~g-KGGVGKTTta~nLA~~La~~G---~rVLlID~ 36 (290)
T CHL00072 1 MKLAVYG-KGGIGKSTTSCNISIALARRG---KKVLQIGC 36 (290)
T ss_pred CeEEEEC-CCCCcHHHHHHHHHHHHHHCC---CeEEEEec
Confidence 6777776 334589999999999999987 47787774
No 376
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=27.18 E-value=1.7e+02 Score=25.89 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=13.8
Q ss_pred HHHHHHhcchheecCCh
Q 012492 338 MEKWMGACDCIITKAGP 354 (462)
Q Consensus 338 ~~~l~~~aD~vV~~sg~ 354 (462)
..++++.||++|++.|+
T Consensus 146 qv~~~~~a~viig~hGs 162 (206)
T PF04577_consen 146 QVKLFASAKVIIGPHGS 162 (206)
T ss_pred HHHHhcCCCEEEecCch
Confidence 34699999999998773
No 377
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=26.75 E-value=3.6e+02 Score=24.37 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=25.9
Q ss_pred EEeccchhHHHHHHhcchhee-cCChhhH---HHHHHhCC-CEEE
Q 012492 330 KVRGFETQMEKWMGACDCIIT-KAGPGTI---AEALIRGL-PIIL 369 (462)
Q Consensus 330 ~~~g~~~~~~~l~~~aD~vV~-~sg~~t~---~EAla~G~-PvI~ 369 (462)
.+.++...-..+...||++|. ++|.+|+ +|++..+. |+..
T Consensus 96 ~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~ 140 (205)
T COG1611 96 TGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHA 140 (205)
T ss_pred ecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCccc
Confidence 344444344468889999775 5556775 56777777 7663
No 378
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=26.70 E-value=1.8e+02 Score=24.38 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=23.7
Q ss_pred CeEEEEecCC-CchHHH-HHHHHHHHHhhhcCCceEEEEEecc
Q 012492 63 KNVLILMSDT-GGGHRA-SAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 63 ~kIli~~~~~-G~Gh~~-~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
|||+++.++. -.|+.. .+..+++.+++.| +++.+.++.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g---~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG---AEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT---EEEEEEECT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC---CEEEEEecc
Confidence 7999998774 124444 4556777777764 566666643
No 379
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.62 E-value=2.1e+02 Score=27.07 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=38.1
Q ss_pred HhcchheecCChhhHHHHHH------hCCCEEEecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhc
Q 012492 343 GACDCIITKAGPGTIAEALI------RGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFS 408 (462)
Q Consensus 343 ~~aD~vV~~sg~~t~~EAla------~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~ 408 (462)
..+|++|+-+|-+|++.|+. .++|++..+.+ ..|++.. +++++.+.+.++++
T Consensus 34 ~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 34 KNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYTDWRPFEVDKLVIALAK 92 (265)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------CceecccCCHHHHHHHHHHHHc
Confidence 46899999999888888875 47898887642 2455554 57778888888873
No 380
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are
Probab=26.62 E-value=1e+02 Score=28.52 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCe
Q 012492 153 AKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVI 193 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP 193 (462)
...+...++++.||+|+++.......+.+..|... .++|
T Consensus 86 L~~f~~~i~~~DPDiivG~Ni~~fdl~~L~~R~~~--l~i~ 124 (234)
T cd05776 86 LNFFLAKLQKIDPDVLVGHDLEGFDLDVLLSRIQE--LKVP 124 (234)
T ss_pred HHHHHHHHhhcCCCEEEeeccCCCCHHHHHHHHHH--hCCC
Confidence 44556789999999999988655555555555432 3666
No 381
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.51 E-value=1.3e+02 Score=28.85 Aligned_cols=20 Identities=0% Similarity=0.037 Sum_probs=16.0
Q ss_pred HHHHHHHHhhCCCEEEECCc
Q 012492 154 KEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~ 173 (462)
..+.+.+++++||+|+..+.
T Consensus 159 ~~~~~~l~~~~~Dlivlagy 178 (289)
T PRK13010 159 AQILDLIETSGAELVVLARY 178 (289)
T ss_pred HHHHHHHHHhCCCEEEEehh
Confidence 35567899999999988764
No 382
>PRK10867 signal recognition particle protein; Provisional
Probab=26.45 E-value=6e+02 Score=26.04 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=25.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhh-c
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIE-F 91 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~-g 91 (462)
.+|.++++..|.|-.+.+..||..|.++ |
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G 129 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKK 129 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcC
Confidence 4777788889999999999999999987 5
No 383
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=26.38 E-value=3.6e+02 Score=22.00 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=48.5
Q ss_pred EccC-CHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCCh---hhHHHHHHhCCCEEEecCCCCccccchH
Q 012492 309 ICGR-NRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAGP---GTIAEALIRGLPIILNDYIPGQEKGNVP 382 (462)
Q Consensus 309 v~G~-~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~---~t~~EAla~G~PvI~~~~~~~~~~~n~~ 382 (462)
+.++ .+...+.+++ +. .|.+.... +++.+.++.+|+++..+++ .-+++++ -++.+|.....+-. .....
T Consensus 3 i~~~~~~~~~~~l~~-~~--~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d-~id~~ 77 (133)
T PF00389_consen 3 ITDPLPDEEIERLEE-GF--EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVD-NIDLE 77 (133)
T ss_dssp ESSS-SHHHHHHHHH-TS--EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCT-TB-HH
T ss_pred EeccCCHHHHHHHHC-Cc--eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccC-cccHH
Confidence 3443 3334455554 22 56666543 5778899999999987654 3456665 78888888765433 23567
Q ss_pred HHHHCCceee
Q 012492 383 YVVDNGAGVF 392 (462)
Q Consensus 383 ~l~~~G~g~~ 392 (462)
.+.+.|..+.
T Consensus 78 ~a~~~gI~V~ 87 (133)
T PF00389_consen 78 AAKERGIPVT 87 (133)
T ss_dssp HHHHTTSEEE
T ss_pred HHhhCeEEEE
Confidence 7778886554
No 384
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=25.85 E-value=1.3e+02 Score=27.70 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=28.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
|+|+.+++..|.|-.+.+..|+..|+++|. .|.+.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~---~V~vi 35 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGY---RVATA 35 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCC---eEEEE
Confidence 577777777789999999999999998863 45544
No 385
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.80 E-value=1.5e+02 Score=28.62 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHhcchheecCChhhHHHHHH----hCCCEEEecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhc
Q 012492 340 KWMGACDCIITKAGPGTIAEALI----RGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFS 408 (462)
Q Consensus 340 ~l~~~aD~vV~~sg~~t~~EAla----~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~ 408 (462)
++-..+|++|+-+|-+|++.|+. .++|++..+.+ ..|++.. +++++.+.+.+++.
T Consensus 64 ~~~~~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 64 ELGQYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLTQIPREYMTDKLLPVLE 123 (296)
T ss_pred hcCcCCCEEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEeeccCHHHHHHHHHHHHc
Confidence 33346899999999888888764 37899987742 1466654 57888889999884
No 386
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.76 E-value=1.5e+02 Score=28.70 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=39.8
Q ss_pred HHHhcchheecCChhhHHHHHHh----CCCEEEecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhc
Q 012492 341 WMGACDCIITKAGPGTIAEALIR----GLPIILNDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFS 408 (462)
Q Consensus 341 l~~~aD~vV~~sg~~t~~EAla~----G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~ 408 (462)
..+.+|++|+-+|-+|++.|... ++|++..+.+ ..|++.. +++++.+++.+++.
T Consensus 69 ~~~~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 69 AADGCELVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLAEAEAEDLDEAVERVVD 127 (306)
T ss_pred cccCCCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceeccCCHHHHHHHHHHHHc
Confidence 33568999999997888887653 7899987642 2456554 57888889999884
No 387
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=25.70 E-value=5.7e+02 Score=26.11 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=24.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHh-hhc
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFK-IEF 91 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~-~~g 91 (462)
.+|.++++..|.|-.+.+..||..|. +.|
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g 128 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQG 128 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCC
Confidence 47888889999999999999999987 344
No 388
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=25.45 E-value=1.3e+02 Score=28.84 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=28.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|++|.|. +--|-|-.+.+.+||-+|.+.| ..|.++|.
T Consensus 4 ~~~iai~-~KGGvGKTt~~~nLa~~la~~g---~kVLliD~ 40 (295)
T PRK13234 4 LRQIAFY-GKGGIGKSTTSQNTLAALVEMG---QKILIVGC 40 (295)
T ss_pred ceEEEEE-CCCCccHHHHHHHHHHHHHHCC---CeEEEEec
Confidence 4456665 5566789999999999999987 47777764
No 389
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=25.23 E-value=1.2e+02 Score=27.98 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=28.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+.|.|...--|.|-.+.+.+||.+|.++| ..|.++|.
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G---~~VlliD~ 38 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDG---KRVALFEA 38 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCC---CcEEEEeC
Confidence 344555555566799999999999999987 36777774
No 390
>PRK07206 hypothetical protein; Provisional
Probab=25.12 E-value=2.3e+02 Score=28.48 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=15.4
Q ss_pred HHHHHHHhhCCCEEEECCcc
Q 012492 155 EVEAGLMEYKPDIIISVHPL 174 (462)
Q Consensus 155 ~l~~~l~~~kPDvVi~~~~~ 174 (462)
.+.+.+++++||.|+.....
T Consensus 61 ~l~~~~~~~~~d~vi~~~e~ 80 (416)
T PRK07206 61 DLVEFLRKLGPEAIIAGAES 80 (416)
T ss_pred HHHHHHHHcCCCEEEECCCc
Confidence 55677899999999976543
No 391
>PRK09739 hypothetical protein; Provisional
Probab=25.10 E-value=1.8e+02 Score=25.97 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=25.2
Q ss_pred CCCeEEEEecCC-CchH-HHHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 61 RTKNVLILMSDT-GGGH-RASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 61 ~~~kIli~~~~~-G~Gh-~~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
.||||+++.++. .+|. ...+..+++.+++.|+ ++.+.|+..
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~---~v~~~dL~~ 44 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGH---QVEELDLYR 44 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCC---EEEEEEhhh
Confidence 378999997663 2222 3345567777777653 666666543
No 392
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=25.09 E-value=5.8e+02 Score=24.50 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.0
Q ss_pred cchheecCChhhHHHHHHhCCCEEEec
Q 012492 345 CDCIITKAGPGTIAEALIRGLPIILND 371 (462)
Q Consensus 345 aD~vV~~sg~~t~~EAla~G~PvI~~~ 371 (462)
.|++|+..++.+.+=|-.+|+|+|.+.
T Consensus 94 pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 94 PDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred CCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 499999988878888999999999654
No 393
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=24.99 E-value=1.3e+02 Score=27.94 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=22.0
Q ss_pred eEEEEec------CCCchHHHHHHHHHHHHhhhcC
Q 012492 64 NVLILMS------DTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 64 kIli~~~------~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
||++++. .+| |-...+.+|+++|+++|+
T Consensus 1 kIl~vt~E~~P~~k~G-GLgdv~~~L~kaL~~~G~ 34 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVG-GLGDVVGSLPKALAKQGH 34 (245)
T ss_dssp EEEEE-S-BTTTB-SS-HHHHHHHHHHHHHHHTT-
T ss_pred CEEEEEcccCcccccC-cHhHHHHHHHHHHHhcCC
Confidence 6888873 375 999999999999999985
No 394
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=24.77 E-value=2.1e+02 Score=27.10 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=37.2
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH-HHHHHHhhcc----CCCCeEEeccc--hhHH
Q 012492 267 ILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR-TLASTLQSEE----WKIPVKVRGFE--TQME 339 (462)
Q Consensus 267 ~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-~l~~~~~~~~----~~~~V~~~g~~--~~~~ 339 (462)
...+++++|.+.|-+ . ++++.|.+ .+.+++ ++++.. .+.+..+++. ....+.-.+.. ++..
T Consensus 5 ~~~~~lITGASsGIG--~----~~A~~lA~-----~g~~li-LvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~ 72 (265)
T COG0300 5 KGKTALITGASSGIG--A----ELAKQLAR-----RGYNLI-LVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALE 72 (265)
T ss_pred CCcEEEEECCCchHH--H----HHHHHHHH-----CCCEEE-EEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHH
Confidence 346799999887743 2 33444443 134554 456654 3433333322 22223333332 3444
Q ss_pred HHHH-------hcchheecCC
Q 012492 340 KWMG-------ACDCIITKAG 353 (462)
Q Consensus 340 ~l~~-------~aD~vV~~sg 353 (462)
.+.. ..|++|-.+|
T Consensus 73 ~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 73 RLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred HHHHHHHhcCCcccEEEECCC
Confidence 4433 3678887776
No 395
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=24.77 E-value=1.5e+02 Score=27.59 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=25.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|||+|..-+ |.|-.+.+..|+..|.++++ +.|.++|.
T Consensus 1 mkIaI~GKG-G~GKTtiaalll~~l~~~~~--~~VLvVDa 37 (255)
T COG3640 1 MKIAITGKG-GVGKTTIAALLLKRLLSKGG--YNVLVVDA 37 (255)
T ss_pred CeEEEecCC-CccHHHHHHHHHHHHHhcCC--ceEEEEeC
Confidence 688887633 24777777776778877753 67888874
No 396
>PRK00170 azoreductase; Reviewed
Probab=24.68 E-value=1.5e+02 Score=26.31 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=24.7
Q ss_pred CCeEEEEecCC-Cc-hHH-HHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 62 TKNVLILMSDT-GG-GHR-ASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 62 ~~kIli~~~~~-G~-Gh~-~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
||||+++.++. .. |.. ..+..+++.|++.++ +.++.+.|+.+
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~-~~~v~~~dL~~ 45 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHP-DDEVTVRDLAA 45 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCC-CCeEEEEECCC
Confidence 68999998764 11 222 233456667777632 24667777643
No 397
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=24.67 E-value=6e+02 Score=23.99 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=36.7
Q ss_pred hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHh
Q 012492 354 PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 354 ~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll 407 (462)
..-+.-|..+|..+|........ ...+...+..+.+.+..++.+.+.+++
T Consensus 222 ~~Di~aA~~AG~~~I~v~~g~~~----~~~l~~~~ad~~i~~~~eL~~~~~~~~ 271 (273)
T PRK13225 222 TRDVEAARQVGLIAVAVTWGFND----RQSLVAACPDWLLETPSDLLQAVTQLM 271 (273)
T ss_pred HHHHHHHHHCCCeEEEEecCCCC----HHHHHHCCCCEEECCHHHHHHHHHHHh
Confidence 45567788999999988754221 233566788888999999988887776
No 398
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=24.54 E-value=5.2e+02 Score=23.26 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=24.5
Q ss_pred hhHHHHHHhcchheecCC--------------hhhHHHHHHhCCCEEEecC
Q 012492 336 TQMEKWMGACDCIITKAG--------------PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg--------------~~t~~EAla~G~PvI~~~~ 372 (462)
++..+.+..||+++.++| ...+-++...|+|++-+-.
T Consensus 72 ~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SA 122 (212)
T cd03146 72 EDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSA 122 (212)
T ss_pred ccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECH
Confidence 466788899999988765 1113344556888877654
No 399
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=24.50 E-value=5.4e+02 Score=23.37 Aligned_cols=100 Identities=9% Similarity=0.019 Sum_probs=49.3
Q ss_pred CceEEEEccCC-HHHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC-----hhhHHHHHHhCCCEEEecCCCCc
Q 012492 303 IGQLIIICGRN-RTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG-----PGTIAEALIRGLPIILNDYIPGQ 376 (462)
Q Consensus 303 ~~~~lvv~G~~-~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg-----~~t~~EAla~G~PvI~~~~~~~~ 376 (462)
+.++.++.... +++....++. ++.+.. .+--.+++..++++|.... -.....|-..++|+=+.+.+...
T Consensus 35 ga~v~Vvs~~~~~el~~~~~~~----~i~~~~-~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~~ 109 (210)
T COG1648 35 GADVTVVSPEFEPELKALIEEG----KIKWIE-REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPELC 109 (210)
T ss_pred CCEEEEEcCCccHHHHHHHHhc----Ccchhh-cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCcccC
Confidence 34566655544 3444444432 233332 1111244555888876554 33345577789998887765321
Q ss_pred cccchHHHHHC-CceeeeCC-------HHHHHHHHHHHhc
Q 012492 377 EKGNVPYVVDN-GAGVFTRS-------PKETARIVTEWFS 408 (462)
Q Consensus 377 ~~~n~~~l~~~-G~g~~~~~-------~~~la~~i~~ll~ 408 (462)
.. +.....+. +.-+.+.+ ...+.+.|+++|.
T Consensus 110 ~f-~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~~l~ 148 (210)
T COG1648 110 DF-IFPAIVDRGPLQIAISTGGKSPVLARLLREKIEALLP 148 (210)
T ss_pred ce-ecceeeccCCeEEEEECCCCChHHHHHHHHHHHHHcC
Confidence 11 22223333 33333332 3455566777773
No 400
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=24.44 E-value=2.1e+02 Score=29.32 Aligned_cols=32 Identities=19% Similarity=-0.009 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
+|+||||+..+. .+..+++++++.| +++++++
T Consensus 1 ~~kkili~g~g~------~~~~~~~aa~~lG---~~vv~~~ 32 (449)
T TIGR00514 1 MLDKILIANRGE------IALRILRACKELG---IKTVAVH 32 (449)
T ss_pred CcceEEEeCCCH------HHHHHHHHHHHcC---CeEEEEE
Confidence 367999984433 3677999999987 3556554
No 401
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=24.22 E-value=1.5e+02 Score=27.50 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=29.0
Q ss_pred ChhhHHHHH-HhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHh
Q 012492 353 GPGTIAEAL-IRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 353 g~~t~~EAl-a~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll 407 (462)
|+...-|.+ +.|+|+|++...++.. --+.+.+.|.|+++-..+.+.-+=+++|
T Consensus 74 GP~~ARE~l~~~~iP~IvI~D~p~~k--~kd~l~~~g~GYIivk~DpMIGArREFL 127 (276)
T PF01993_consen 74 GPTKAREMLSAKGIPCIVISDAPTKK--AKDALEEEGFGYIIVKADPMIGARREFL 127 (276)
T ss_dssp HHHHHHHHHHHSSS-EEEEEEGGGGG--GHHHHHHTT-EEEEETTS------TTT-
T ss_pred CcHHHHHHHHhCCCCEEEEcCCCchh--hHHHHHhcCCcEEEEecCcccccccccc
Confidence 466677876 6899998876544322 2467889999987654444444444444
No 402
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.21 E-value=1.5e+02 Score=28.61 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=39.9
Q ss_pred HHHHhcchheecCChhhHHHHHH----hCCCEEEecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhc
Q 012492 340 KWMGACDCIITKAGPGTIAEALI----RGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFS 408 (462)
Q Consensus 340 ~l~~~aD~vV~~sg~~t~~EAla----~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~ 408 (462)
++.+.+|++|+-+|-+|++.|+. .++|++..+.+ ..|++.. +++++.+.+.++++
T Consensus 60 ~~~~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 60 ELDGSADMVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLATVSKEEIEETIDELLN 119 (292)
T ss_pred hcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCcccccCHHHHHHHHHHHHc
Confidence 34456899999999778888766 37899987642 1355554 57888889999884
No 403
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=23.81 E-value=6.1e+02 Score=23.81 Aligned_cols=142 Identities=18% Similarity=0.114 Sum_probs=66.9
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHH----HHHHHHcCCC
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEV----AKRASYFGLE 233 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~----~~~l~~~gi~ 233 (462)
+.+.++++|=||..+.......+..... .++|+|.+..... . ....+.+.+-+... .+.+.+.|.
T Consensus 50 ~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~~iPvV~~~~~~~--~----~~~~~~V~~D~~~a~~~a~~~Li~~Gh- 118 (279)
T PF00532_consen 50 ELLLQRRVDGIILASSENDDEELRRLIK----SGIPVVLIDRYID--N----PEGVPSVYIDNYEAGYEATEYLIKKGH- 118 (279)
T ss_dssp HHHHHTTSSEEEEESSSCTCHHHHHHHH----TTSEEEEESS-SC--T----TCTSCEEEEEHHHHHHHHHHHHHHTTC-
T ss_pred HHHHhcCCCEEEEecccCChHHHHHHHH----cCCCEEEEEeccC--C----cccCCEEEEcchHHHHHHHHHHHhccc-
Confidence 5578999997665554443221222221 3799987544321 0 12445565544333 344555665
Q ss_pred CCc-EEEcCCCCChhhhcccCCh----HHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEE
Q 012492 234 VSQ-IRVFGLPIRPSFVRAVISK----DNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLII 308 (462)
Q Consensus 234 ~~~-i~v~g~pv~~~~~~~~~~~----~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lv 308 (462)
.+ |.+++.+.+..... .| .+..++.|++.+. ..+.-+....+...+++..+++ . .|++..+
T Consensus 119 -~~~I~~i~~~~~~~~~~---~R~~Gy~~Al~~~Gl~~~~--~~i~~~~~~~~~g~~~~~~ll~---~----~p~idai- 184 (279)
T PF00532_consen 119 -RRPIAFIGGPEDSSTSR---ERLQGYRDALKEAGLPIDE--EWIFEGDFDYESGYEAARELLE---S----HPDIDAI- 184 (279)
T ss_dssp -CSTEEEEEESTTTHHHH---HHHHHHHHHHHHTTSCEEE--EEEEESSSSHHHHHHHHHHHHH---T----STT-SEE-
T ss_pred -CCeEEEEecCcchHHHH---HHHHHHHHHHHHcCCCCCc--ccccccCCCHHHHHHHHHHHHh---h----CCCCEEE-
Confidence 46 87776655432111 12 1334557775433 2333344443333344443332 2 4666544
Q ss_pred EccCCHH---HHHHHhhcc
Q 012492 309 ICGRNRT---LASTLQSEE 324 (462)
Q Consensus 309 v~G~~~~---l~~~~~~~~ 324 (462)
+|+.+.- ..+.+++.+
T Consensus 185 ~~~nd~~A~ga~~~l~~~g 203 (279)
T PF00532_consen 185 FCANDMMAIGAIRALRERG 203 (279)
T ss_dssp EESSHHHHHHHHHHHHHTT
T ss_pred EEeCHHHHHHHHHHHHHcC
Confidence 4555431 234455544
No 404
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=23.80 E-value=7.7e+02 Score=24.96 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=73.7
Q ss_pred cEEEEcCHHHHHHHHHc--CCCCCcEEEcCCCCChhhhcccCChHHH----HHHcCCCCCCcEEEEE-eCCCCC--ccHH
Q 012492 214 NRCYCPSKEVAKRASYF--GLEVSQIRVFGLPIRPSFVRAVISKDNL----RLELQMDPILPAVLLM-GGGEGM--GPVK 284 (462)
Q Consensus 214 d~~i~~s~~~~~~l~~~--gi~~~~i~v~g~pv~~~~~~~~~~~~~~----r~~l~l~~~~~~iLv~-gG~~~~--~~~~ 284 (462)
|.++-..+...+.+.+. ..+++-|.++...+..-+ . .|-+.+ ++++.-..+.|++.+. .|-.+. .+..
T Consensus 60 d~V~Gg~~~L~~~i~~~~~~~~p~~I~v~~tC~~~li-G--dDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~ 136 (428)
T cd01965 60 AAVFGGEDNLIEALKNLLSRYKPDVIGVLTTCLTETI-G--DDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYD 136 (428)
T ss_pred CeeECcHHHHHHHHHHHHHhcCCCEEEEECCcchhhc-C--CCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHH
Confidence 45554334444444331 234455666666554322 2 122322 2222112345666663 333332 2344
Q ss_pred HHHHHHHHhhhcccC-CCCCceEEEEccCC------HHHHHHHhhccCCCCeEEe------------------cc--chh
Q 012492 285 ETAMALGESLLDKET-GRPIGQLIIICGRN------RTLASTLQSEEWKIPVKVR------------------GF--ETQ 337 (462)
Q Consensus 285 ~~l~~l~~~l~~~~~-~~~~~~~lvv~G~~------~~l~~~~~~~~~~~~V~~~------------------g~--~~~ 337 (462)
..+.++.+.+..... ..++ .+-++.|.. .++++.+++.|+..+..+- |. +++
T Consensus 137 ~a~~al~~~~~~~~~~~~~~-~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~ 215 (428)
T cd01965 137 NAVKAIIEQLAKPSEVKKNG-KVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEE 215 (428)
T ss_pred HHHHHHHHHHhcccCCCCCC-eEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHH
Confidence 556666665543210 1122 333333332 2577788888877666542 11 245
Q ss_pred HHHHHHhcch--heecCChhhHHHHHH--hCCCEEEecCC
Q 012492 338 MEKWMGACDC--IITKAGPGTIAEALI--RGLPIILNDYI 373 (462)
Q Consensus 338 ~~~l~~~aD~--vV~~sg~~t~~EAla--~G~PvI~~~~~ 373 (462)
+.+ +..|.+ ++++..+..+.|.|. +|+|.+..+.+
T Consensus 216 i~~-~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~p 254 (428)
T cd01965 216 IRD-AGNAKATIALGEYSGRKAAKALEEKFGVPYILFPTP 254 (428)
T ss_pred HHH-hccCcEEEEEChhhhHHHHHHHHHHHCCCeeecCCC
Confidence 433 334443 444423455666654 89999988754
No 405
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.76 E-value=1.5e+02 Score=28.66 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=39.8
Q ss_pred HHHHhcchheecCChhhHHHHHHh----CCCEEEecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhc
Q 012492 340 KWMGACDCIITKAGPGTIAEALIR----GLPIILNDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFS 408 (462)
Q Consensus 340 ~l~~~aD~vV~~sg~~t~~EAla~----G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~ 408 (462)
.+-+.+|++|+-+|-+|++.|+.. ++|++..+.+ ..|++.. +++++.+.+.+++.
T Consensus 64 ~~~~~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFLt~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 64 GFDSSMKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFLTEAYLNQLDEAIDQVLA 123 (305)
T ss_pred hcccCcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcccccCCHHHHHHHHHHHHc
Confidence 333468999998997788887654 7899987642 2355543 57888889999884
No 406
>PLN02554 UDP-glycosyltransferase family protein
Probab=23.68 E-value=1.3e+02 Score=31.35 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=26.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
+++|+++.... .||..+.+.||+.|..+|+ ...++++
T Consensus 2 ~~hvvl~P~pa-qGHi~P~l~LAk~La~~G~-~~~vT~v 38 (481)
T PLN02554 2 KIELVFIPSPG-IGHLRPTVELAKLLVDSDD-RLSITVI 38 (481)
T ss_pred ceEEEEeCCcc-hhhHHHHHHHHHHHHhCCC-CEEEEEE
Confidence 45666666555 6999999999999998752 2344444
No 407
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=23.60 E-value=4.4e+02 Score=25.97 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHHHHhCCCEEEecCCCCccccchH-------HHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--
Q 012492 357 IAEALIRGLPIILNDYIPGQEKGNVP-------YVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQP-- 427 (462)
Q Consensus 357 ~~EAla~G~PvI~~~~~~~~~~~n~~-------~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~-- 427 (462)
+-|+ -.|.|+|..+.+++... |.. .+.+.| +-+.+++.++-.-|. .-.+.-+.-+.+.+++.++
T Consensus 98 vkE~-~~giPVI~V~t~GGfGd-n~~G~~~aLeAiidq~----~i~~~e~~rq~~~l~-~at~~ek~~g~a~~~yi~p~~ 170 (352)
T TIGR03282 98 VDEA-DVDAEVIAVEVHAGFGD-NTEGVIATLESAAEAG----IIDEDEVERQKELLK-KATEVEKKRGMAKREYIEPSY 170 (352)
T ss_pred HHHh-CCCCCEEEEECCCCCcc-HHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHH-HHHHHHHHhchhhccccCCCC
Confidence 3443 57899999988544311 111 111222 224445544433322 2334444445555667654
Q ss_pred -cHHHHHHHHHHHHHhccC
Q 012492 428 -EAVVDIVKDIHDLAAQRG 445 (462)
Q Consensus 428 -~~~~~ia~~i~~l~~~~~ 445 (462)
+.-.++++.+.+++.+..
T Consensus 171 ~d~~~~~~~~l~~~~~~~~ 189 (352)
T TIGR03282 171 GDDKHKVAKRLVDLIQEGK 189 (352)
T ss_pred CccHHHHHHHHHHHHhcCC
Confidence 456788999988887665
No 408
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=23.55 E-value=1.7e+02 Score=23.28 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=33.1
Q ss_pred eEEEEccCCHH-------HHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHH---HHhCCCEEEecC
Q 012492 305 QLIIICGRNRT-------LASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEA---LIRGLPIILNDY 372 (462)
Q Consensus 305 ~~lvv~G~~~~-------l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EA---la~G~PvI~~~~ 372 (462)
+++++||.+-. +....++.+++-.|.-.+. +........+|+++..+.-.-..+- .+-++|+++.+.
T Consensus 5 kIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~-~~~~~~~~~~DviLl~Pqi~~~~~~i~~~~~~~pV~~I~~ 81 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPE-TLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDS 81 (106)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeec-chhhccccCCCEEEECHHHHHHHHHHHhhcCCCCEEEECh
Confidence 46777776641 1222233343333333222 3333456677988876541112221 333479999874
No 409
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=23.40 E-value=1.4e+02 Score=29.45 Aligned_cols=50 Identities=20% Similarity=0.096 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCEEEECCcccchH----HHHHHHHcCCCCCCeEEEEecCCC
Q 012492 153 AKEVEAGLMEYKPDIIISVHPLMQHI----PLWVLKWQGLQKKVIFVTVITDLN 202 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~~~~~~----~~~~~~~~~~~~~iP~v~~~~d~~ 202 (462)
.+++.+.+++.+||++|+--.+..+- ...+++......+||+|+-...-+
T Consensus 69 ~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~~EN 122 (349)
T PF07355_consen 69 LKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMYEEN 122 (349)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEecccC
Confidence 44667889999999999855332211 111222111125999998765544
No 410
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=23.34 E-value=60 Score=30.90 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=28.7
Q ss_pred hHHHHHHhcchheecCC----hhhHHHHHHhCC-CEEEecC
Q 012492 337 QMEKWMGACDCIITKAG----PGTIAEALIRGL-PIILNDY 372 (462)
Q Consensus 337 ~~~~l~~~aD~vV~~sg----~~t~~EAla~G~-PvI~~~~ 372 (462)
+..+.|+.|...+++.| ..-+.|||.+|+ |||+.+.
T Consensus 229 ~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~ 269 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDD 269 (302)
T ss_pred HHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCc
Confidence 46789999999888776 355899999995 7887664
No 411
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.19 E-value=1.5e+02 Score=34.29 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=27.1
Q ss_pred CCCeEEEEecCCC-ch----HHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 61 RTKNVLILMSDTG-GG----HRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 61 ~~~kIli~~~~~G-~G----h~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
..+|||++++|-. -| +...+..++++|++.| +++++++.
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G---~~vi~v~~ 49 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEG---YQVVLVNP 49 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcC---CEEEEEeC
Confidence 4579999986621 23 3346678999999987 47777764
No 412
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=23.03 E-value=2e+02 Score=27.26 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=28.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
++|..+++..|.|-.+.+..||..|++.|. .|.+++
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~---~V~li~ 107 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGK---SVLLAA 107 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEe
Confidence 567777788999999999999999987753 555553
No 413
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=23.02 E-value=70 Score=23.89 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=17.5
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHH
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAF 87 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L 87 (462)
+.++|+|++.+|+|.|-.++ |+-+|
T Consensus 37 ~GpK~VLViGaStGyGLAsR---Ia~aF 61 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASR---IAAAF 61 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHH---HHHHH
T ss_pred CCCceEEEEecCCcccHHHH---HHHHh
Confidence 34689999999998776665 55666
No 414
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=23.01 E-value=2.3e+02 Score=27.98 Aligned_cols=52 Identities=27% Similarity=0.309 Sum_probs=33.7
Q ss_pred chhHHHHHHhcchheecCC-----------hhhHHH-HHHhCCCEEEecCCCCccccchHHHHHCCc
Q 012492 335 ETQMEKWMGACDCIITKAG-----------PGTIAE-ALIRGLPIILNDYIPGQEKGNVPYVVDNGA 389 (462)
Q Consensus 335 ~~~~~~l~~~aD~vV~~sg-----------~~t~~E-Ala~G~PvI~~~~~~~~~~~n~~~l~~~G~ 389 (462)
..++.+.++.||++|+--| +..+.+ |-..++|+|+.--.- ..+...+.+.|.
T Consensus 275 ~~~le~~v~daDLVITGEGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs~---~~~~~~v~~~GI 338 (378)
T COG1929 275 ATNLEDAVKDADLVITGEGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAGSL---GEDYEVVHQEGI 338 (378)
T ss_pred HhCHHHhhccCCEEEeCCCcccccccCCccchHHHHhhhhhCCCEEEEeccc---ccCcchhhhcCc
Confidence 3578899999999997433 444566 445999999874321 123344556664
No 415
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=22.89 E-value=1.6e+02 Score=26.99 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=28.7
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.|.|.++.-|.|-.+.+.+||.+|.++| ..|.++|.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g---~~VlliD~ 37 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLG---KKVLALDA 37 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCC---CeEEEEeC
Confidence 4667776677899999999999999886 36777764
No 416
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=22.87 E-value=6.2e+02 Score=23.80 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=33.0
Q ss_pred HHHhhccCC-CCeEEe--ccchhHH-HHHH--hcchheec-CCh-----hhHHHHHHhCCCEEEecCC
Q 012492 318 STLQSEEWK-IPVKVR--GFETQME-KWMG--ACDCIITK-AGP-----GTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 318 ~~~~~~~~~-~~V~~~--g~~~~~~-~l~~--~aD~vV~~-sg~-----~t~~EAla~G~PvI~~~~~ 373 (462)
.+..+++.. .++.-. +|..++. .+|. .+|++|++ ||+ .-+.=|..+|+|||+...+
T Consensus 164 ~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 164 AKCEDLGVPPARIIAMRGPFSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHhcCCChhhEEEecCCcChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 334444433 334333 3444444 4444 67889986 442 1245588999999998765
No 417
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=22.69 E-value=6.2e+02 Score=25.01 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhCCCEE--EECCcc
Q 012492 150 AYYAKEVEAGLMEYKPDII--ISVHPL 174 (462)
Q Consensus 150 ~~~~~~l~~~l~~~kPDvV--i~~~~~ 174 (462)
....+++.+.+++++||=+ +++++-
T Consensus 84 ~~I~~qld~vl~~~~~~~~i~VsDGae 110 (344)
T PF04123_consen 84 RKIAEQLDEVLSKFDPDSAIVVSDGAE 110 (344)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecChh
Confidence 3456678889999999944 455543
No 418
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=22.69 E-value=1.2e+02 Score=28.22 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=21.5
Q ss_pred CCCeEEEEecC----CCchHHHHHHHHHHHHhh
Q 012492 61 RTKNVLILMSD----TGGGHRASAEAIRDAFKI 89 (462)
Q Consensus 61 ~~~kIli~~~~----~G~Gh~~~a~aLa~~L~~ 89 (462)
++|||.|++++ + .||+..|..+.+.|.-
T Consensus 20 ~~~~IgifGGSFdPiH-~GHl~ia~~~~~~l~l 51 (243)
T PRK06973 20 RPRRIGILGGTFDPIH-DGHLALARRFADVLDL 51 (243)
T ss_pred CCceEEEECCCCCCCc-HHHHHHHHHHHHHcCC
Confidence 55789999876 4 7999888877777653
No 419
>PRK04148 hypothetical protein; Provisional
Probab=22.67 E-value=1.6e+02 Score=24.69 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=24.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecccc
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 105 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~ 105 (462)
.+||+.++.|.| .++|..|.+.| ++|..+|..+.
T Consensus 17 ~~kileIG~GfG-------~~vA~~L~~~G---~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIGFY-------FKVAKKLKESG---FDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEecCC-------HHHHHHHHHCC---CEEEEEECCHH
Confidence 368999988886 34566777776 47888887543
No 420
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=22.60 E-value=6.2e+02 Score=23.41 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=28.9
Q ss_pred eEEeccchhHHHHHHhcchheecCC--------------hhhHHHHHHhCCCEEEecC
Q 012492 329 VKVRGFETQMEKWMGACDCIITKAG--------------PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 329 V~~~g~~~~~~~l~~~aD~vV~~sg--------------~~t~~EAla~G~PvI~~~~ 372 (462)
+..+...++..+.+..||+++..+| -..+-|+...|+|++-+-.
T Consensus 64 v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SA 121 (233)
T PRK05282 64 VTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSA 121 (233)
T ss_pred EEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECH
Confidence 4444444566788999998777655 1124577778988876643
No 421
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=22.55 E-value=3.2e+02 Score=27.05 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=25.2
Q ss_pred CCCeEEEEecC--CCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 61 RTKNVLILMSD--TGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 61 ~~~kIli~~~~--~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
+++||.|++++ . .|=.....++.+.+...+ .+|+-.
T Consensus 1 ~~kkIaIlTSGGda-PGmNa~Iravvr~a~~~g---~eV~Gi 38 (347)
T COG0205 1 MMKKIAILTSGGDA-PGMNAVIRAVVRTAIKEG---LEVFGI 38 (347)
T ss_pred CCceEEEEccCCCC-ccHHHHHHHHHHHHHHcC---CEEEEE
Confidence 46899999743 4 455666678888888774 466643
No 422
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=22.49 E-value=1.3e+02 Score=27.24 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 164 KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 164 kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
.||+||...+.....++.-+.. .+||+|.++
T Consensus 143 ~P~~vii~~~~~~~~~i~Ea~~----l~IP~i~i~ 173 (211)
T PF00318_consen 143 LPDLVIILDPNKNKNAIREANK----LNIPTIAIV 173 (211)
T ss_dssp SBSEEEESSTTTTHHHHHHHHH----TTS-EEEEE
T ss_pred cCcEEEEecccccchhHHHHHh----cCceEEEee
Confidence 4999999998776655555554 489999875
No 423
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=22.43 E-value=1.4e+02 Score=25.05 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=29.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
.||+|+.+....-|.....+||+.|+...+ ++|. .|.+
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g--~~V~-lD~~ 38 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCG--IDVI-LDQW 38 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccC--Ccee-ecHH
Confidence 489999877768999999999999999831 4544 5543
No 424
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=22.27 E-value=1.7e+02 Score=26.95 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 155 EVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 155 ~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
+...++....||+||...+.-...++.-|.. ..||+|.++
T Consensus 164 d~~~f~~t~~~D~vvvln~~e~~sAilEA~K----~~IPTIgIV 203 (251)
T KOG0832|consen 164 DALCFLPTLTPDLVVVLNPEENHSAILEAAK----MAIPTIGIV 203 (251)
T ss_pred cceeecccCCcceeEecCcccccHHHHHHHH----hCCCeEEEe
Confidence 3345677888999998887766654444432 489999865
No 425
>PRK08462 biotin carboxylase; Validated
Probab=22.25 E-value=1.6e+02 Score=30.01 Aligned_cols=31 Identities=13% Similarity=-0.049 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
.|+||||+..+. .+..+++++++.|. +++++
T Consensus 3 ~~k~ili~~~g~------~~~~~~~~~~~~G~---~~v~~ 33 (445)
T PRK08462 3 EIKRILIANRGE------IALRAIRTIQEMGK---EAIAI 33 (445)
T ss_pred CCCEEEEECCcH------HHHHHHHHHHHcCC---CEEEE
Confidence 478999987665 25689999999974 44444
No 426
>PRK06217 hypothetical protein; Validated
Probab=22.23 E-value=86 Score=27.52 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=18.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHH
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAF 87 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L 87 (462)
||||+|++.+ |+|-.+.+..|++.|
T Consensus 1 ~~~I~i~G~~-GsGKSTla~~L~~~l 25 (183)
T PRK06217 1 MMRIHITGAS-GSGTTTLGAALAERL 25 (183)
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHc
Confidence 5787777644 468888888888777
No 427
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=22.05 E-value=1.9e+02 Score=26.69 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=26.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 65 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 65 Ili~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
|.|.+.--|.|-.+.++.||.+|.++|. .|.+.|
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~---~V~lID 37 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGA---RVALID 37 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCC---eEEEEe
Confidence 4444444678999999999999999873 777776
No 428
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=22.02 E-value=2.2e+02 Score=28.32 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
.+|||+|+.++. .+..++.++++.| +.++++|..
T Consensus 11 ~~~~ilIiG~g~------~~~~~~~a~~~~G---~~v~~~~~~ 44 (395)
T PRK09288 11 SATRVMLLGSGE------LGKEVAIEAQRLG---VEVIAVDRY 44 (395)
T ss_pred CCCEEEEECCCH------HHHHHHHHHHHCC---CEEEEEeCC
Confidence 457999985442 2345666787776 466767643
No 429
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=21.91 E-value=83 Score=29.89 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhCCCEEEECC
Q 012492 151 YYAKEVEAGLMEYKPDIIISVH 172 (462)
Q Consensus 151 ~~~~~l~~~l~~~kPDvVi~~~ 172 (462)
.+...+.+++++++||++|.++
T Consensus 141 eqp~~i~~Ll~~~~PDIlViTG 162 (287)
T PF05582_consen 141 EQPEKIYRLLEEYRPDILVITG 162 (287)
T ss_pred HhhHHHHHHHHHcCCCEEEEeC
Confidence 3456778899999999998776
No 430
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=21.81 E-value=1.1e+02 Score=27.77 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=25.9
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
+|+|.+.++|.|-...+..|+++|+++|.
T Consensus 1 ~i~I~~t~t~~GKT~vs~~L~~~l~~~g~ 29 (222)
T PRK00090 1 RLFVTGTDTDVGKTVVTAALAQALREAGY 29 (222)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHHcCC
Confidence 46788888999999999999999999975
No 431
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.80 E-value=1.4e+02 Score=26.09 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=20.6
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEE
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~ 197 (462)
+.+...+||+|++.......-..-.... .+||++.+
T Consensus 63 E~ll~l~PDlii~~~~~~~~~~~~~l~~----~gIpvv~i 98 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQTILDKLEQ----LGIPVLYV 98 (186)
T ss_pred HHHhccCCCEEEEecCCCchhHHHHHHH----cCCCEEEe
Confidence 4577899999998653322101111222 48998764
No 432
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=21.77 E-value=1.5e+02 Score=27.30 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=28.6
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.|.|++...|-|-.+.+.+||.+|.+.| ..|.++|.
T Consensus 3 ii~v~s~kGGvGKTt~a~~lA~~la~~g---~~vlliD~ 38 (261)
T TIGR01968 3 VIVITSGKGGVGKTTTTANLGTALARLG---KKVVLIDA 38 (261)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcC---CeEEEEEC
Confidence 4666666677899999999999999876 46777774
No 433
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.69 E-value=1.7e+02 Score=30.43 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=27.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
+-=+++++++||+|-.+...++.+.+....- -.+.+-|
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~--nI~TiED 294 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAALSELNTPER--NIITIED 294 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCc--eEEEeeC
Confidence 3457888999999999998888888865431 2444444
No 434
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=21.65 E-value=6.7e+02 Score=23.42 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=27.6
Q ss_pred CCeEEeccchhHHHHHHhcch------heecCChhhHHHHHHhCCCEEEecC
Q 012492 327 IPVKVRGFETQMEKWMGACDC------IITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 327 ~~V~~~g~~~~~~~l~~~aD~------vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
.+|.+++..++..+-++.-++ .|+-.+|.-+.|++..|.|.++.=.
T Consensus 126 ~~v~~va~~~~~~~~l~~~~~~~~~~G~I~G~~g~ll~e~~~r~i~a~~ll~ 177 (244)
T COG1938 126 PSVYGVATSEEKLEKLKDLGAEPLEEGTIVGPSGALLNECLKRGIPALVLLA 177 (244)
T ss_pred CceEEEecchhhhhHHhhcCCCccccceeecccHHHHHHHHHcCCCeEEEec
Confidence 456666655543444443332 2222235678999999999887643
No 435
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=21.61 E-value=4.7e+02 Score=22.30 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=35.2
Q ss_pred ceEEEEccCCHHHHHHHhhccCCCCeEEec--cc--hhHHHHHHhcchheecCC--------hhhHHHHH-HhCCCEEEe
Q 012492 304 GQLIIICGRNRTLASTLQSEEWKIPVKVRG--FE--TQMEKWMGACDCIITKAG--------PGTIAEAL-IRGLPIILN 370 (462)
Q Consensus 304 ~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g--~~--~~~~~l~~~aD~vV~~sg--------~~t~~EAl-a~G~PvI~~ 370 (462)
+++..++-+..+..+ ..+++++. +. +.+.+.++.||.++...| ...+++++ .+|++-++.
T Consensus 23 ~~V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 23 HEVTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp SEEEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CEEEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhccccccccccccccccccccccee
Confidence 565555444333322 34555542 22 467788889999887554 34567765 568776554
No 436
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=21.59 E-value=1.5e+02 Score=29.94 Aligned_cols=38 Identities=13% Similarity=0.324 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+.|.|...--|.|-.+.+..||.+|..+| ..|.++|.
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G---~rVLlIDl 158 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQG---YRVLAVDL 158 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcC---CceEEEcC
Confidence 334555555566789999999999999987 47788875
No 437
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=21.57 E-value=1.8e+02 Score=25.92 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=24.9
Q ss_pred CeEEEEecCCCchHHHH-HHHHHHHHhhh-cCCceEEEEEe
Q 012492 63 KNVLILMSDTGGGHRAS-AEAIRDAFKIE-FGDEYRIFVKD 101 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~-a~aLa~~L~~~-g~~~~~v~v~d 101 (462)
+||+|+..|. .||... |.++++.+++. | .++.+.+
T Consensus 1 ~kilIiY~S~-~G~T~~lA~~ia~g~~~~~g---~ev~~~~ 37 (197)
T TIGR01755 1 VKVLVLYYSM-YGHIETMARAVAEGAREVDG---AEVVVKR 37 (197)
T ss_pred CeEEEEEeCC-CCHHHHHHHHHHHHHHhcCC---CEEEEEe
Confidence 5899999887 477766 66788888764 4 3555554
No 438
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=21.51 E-value=5.6e+02 Score=22.47 Aligned_cols=37 Identities=5% Similarity=-0.011 Sum_probs=20.7
Q ss_pred hhHHHHHHhcchheecCC-hh-hHHHHHHhCC-CEEEecC
Q 012492 336 TQMEKWMGACDCIITKAG-PG-TIAEALIRGL-PIILNDY 372 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg-~~-t~~EAla~G~-PvI~~~~ 372 (462)
++..+.++.||++|+.+. +. +..+.-.... ..++.+.
T Consensus 89 ~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~ 128 (194)
T cd01078 89 AARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADV 128 (194)
T ss_pred HHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEc
Confidence 566788899999886443 22 1222222233 4566664
No 439
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.47 E-value=1.5e+02 Score=27.68 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCEEE-ECCcccchHHHHHHHHcCCCCCCeEEEEec
Q 012492 153 AKEVEAGLMEYKPDIII-SVHPLMQHIPLWVLKWQGLQKKVIFVTVIT 199 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi-~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~ 199 (462)
...|.+++++.++++|| .+||+...+.-.+.+.. ...+||++-+.-
T Consensus 55 ~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~-~~~~ipylR~eR 101 (249)
T PF02571_consen 55 EEGLAEFLRENGIDAVIDATHPFAAEISQNAIEAC-RELGIPYLRFER 101 (249)
T ss_pred HHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHH-hhcCcceEEEEc
Confidence 34567889999999998 77898765532222221 125899987653
No 440
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=21.34 E-value=1.3e+02 Score=26.62 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=26.3
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
.|+|.+.++|.|-...+..|+++|+++|.
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~ 30 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGI 30 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 68888899999999999999999999874
No 441
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.31 E-value=3.3e+02 Score=27.44 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=31.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
..|.++.+=-|+|-.+.+..+|..++++|.. .-+.+.|.+.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K-~~LvcaDTFR 141 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYK-VALVCADTFR 141 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCc-eeEEeecccc
Confidence 3667677667789999999999999999853 3455567653
No 442
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=21.30 E-value=2.7e+02 Score=25.50 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=28.3
Q ss_pred hhHHHHHHhCCCEEEecCCC-CccccchHHHHHCCceeeeCCHHHHH
Q 012492 355 GTIAEALIRGLPIILNDYIP-GQEKGNVPYVVDNGAGVFTRSPKETA 400 (462)
Q Consensus 355 ~t~~EAla~G~PvI~~~~~~-~~~~~n~~~l~~~G~g~~~~~~~~la 400 (462)
.++-+|+..|+|+.+.|... ..+......|.+.|+ ..+.+.+++.
T Consensus 172 ~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA-~~i~~~~d~~ 217 (220)
T TIGR00732 172 ITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGA-ALITSAKDIL 217 (220)
T ss_pred HHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCC-EEECCHHHHH
Confidence 55667899999999998642 222222345667785 4555655553
No 443
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=21.29 E-value=94 Score=29.76 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhCCCEEEECCc
Q 012492 152 YAKEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~ 173 (462)
...+|.+++++++||+|+++.+
T Consensus 111 ~~~~l~~~Ir~~~PdvViT~~p 132 (284)
T TIGR03445 111 AAGALVAVIREVRPHVVVTYDP 132 (284)
T ss_pred HHHHHHHHHHHhCCcEEEecCC
Confidence 3467788999999999998553
No 444
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=21.28 E-value=1.4e+02 Score=28.62 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=27.1
Q ss_pred CCCCeEEEEecCCCchHHH---HHHHHHHHHhhhcCCceEEEEE
Q 012492 60 ERTKNVLILMSDTGGGHRA---SAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~---~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
++++||++++++-..=|.. .+..+.++|++.|+ ++.+.
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~---~v~~i 42 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGY---DAHPI 42 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCC---EEEEE
Confidence 4557999998664334444 77899999999875 55544
No 445
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=21.22 E-value=2.1e+02 Score=23.84 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=26.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 65 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 65 Ili~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|.|++..-|.|-...+.+||..|.+.+. .|.++|.
T Consensus 3 i~v~s~~~g~G~t~~a~~lA~~la~~~~---~Vllid~ 37 (157)
T PF13614_consen 3 IAVWSPKGGVGKTTLALNLAAALARKGK---KVLLIDF 37 (157)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTT----EEEEE-
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhcCC---CeEEEEC
Confidence 5666666678999999999999999875 3566654
No 446
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=21.12 E-value=4.7e+02 Score=25.47 Aligned_cols=89 Identities=22% Similarity=0.389 Sum_probs=50.2
Q ss_pred HcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEe--ccchhH
Q 012492 261 ELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVR--GFETQM 338 (462)
Q Consensus 261 ~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~--g~~~~~ 338 (462)
..++.+. ..+|+.|++-|-+ .++..+++.+ ....+++.+...+.. .+++++-+.-+.+. +|.+++
T Consensus 137 ~~~l~~g-~~VLV~gaaGgVG---~~aiQlAk~~--------G~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~~~~~~v 203 (326)
T COG0604 137 RAGLKPG-ETVLVHGAAGGVG---SAAIQLAKAL--------GATVVAVVSSSEKLE-LLKELGADHVINYREEDFVEQV 203 (326)
T ss_pred hcCCCCC-CEEEEecCCchHH---HHHHHHHHHc--------CCcEEEEecCHHHHH-HHHhcCCCEEEcCCcccHHHHH
Confidence 4456554 4688888775543 3344455543 223455556555443 66666543222222 245666
Q ss_pred HHHHH--hcchheecCChhhHHHHHH
Q 012492 339 EKWMG--ACDCIITKAGPGTIAEALI 362 (462)
Q Consensus 339 ~~l~~--~aD~vV~~sg~~t~~EAla 362 (462)
.++.. ..|+++-+-|+.+..+++.
T Consensus 204 ~~~t~g~gvDvv~D~vG~~~~~~~l~ 229 (326)
T COG0604 204 RELTGGKGVDVVLDTVGGDTFAASLA 229 (326)
T ss_pred HHHcCCCCceEEEECCCHHHHHHHHH
Confidence 66775 4799988878766655443
No 447
>PRK11670 antiporter inner membrane protein; Provisional
Probab=21.12 E-value=1.6e+02 Score=29.40 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=28.5
Q ss_pred CCe-EEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKN-VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~k-Ili~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
++| |+|.++--|-|-.+.+.+||-+|.+.| ..|.++|.
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G---~rVlLID~ 144 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEG---AKVGILDA 144 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCC---CcEEEEeC
Confidence 445 455555567799999999999999887 36777764
No 448
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=21.07 E-value=88 Score=36.17 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=27.3
Q ss_pred CCCeEEEEecCC-Cch----HHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 61 RTKNVLILMSDT-GGG----HRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 61 ~~~kIli~~~~~-G~G----h~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
.++||||+.+|. --| +..++..++++|++.| ++++++|..
T Consensus 6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G---~~vi~v~~~ 50 (1066)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREEG---YRVVLVNSN 50 (1066)
T ss_pred CCCEEEEECCchhhhcccccccchHHHHHHHHHHcC---CEEEEEcCC
Confidence 468999998652 123 2345567899999987 477777643
No 449
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.95 E-value=1.8e+02 Score=27.90 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=38.3
Q ss_pred HHHhcchheecCChhhHHHHHH----hCCCEEEecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhc
Q 012492 341 WMGACDCIITKAGPGTIAEALI----RGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFS 408 (462)
Q Consensus 341 l~~~aD~vV~~sg~~t~~EAla----~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~ 408 (462)
+.+.+|++|+-+|-+|++.|+. .++|++..+.+ ..|++.. +++++.+++.+++.
T Consensus 61 ~~~~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 61 LFKISDFLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred cccCCCEEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccCCcCCHHHHHHHHHHHHc
Confidence 3457899999898778876654 37898887642 1355543 57788888888873
No 450
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.93 E-value=7.6e+02 Score=23.80 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=36.0
Q ss_pred CeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 328 PVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 328 ~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
++..++|+ ++..+++..||+-+.++. -+..-|.-+|+|.+=--++
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~VRGE-DSFVRAq~agkPflWHIYp 285 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLVRGE-DSFVRAQLAGKPFLWHIYP 285 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccceeecc-hHHHHHHHcCCCcEEEecC
Confidence 45567786 789999999999887654 5678999999999876554
No 451
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=20.82 E-value=1.3e+02 Score=29.79 Aligned_cols=36 Identities=28% Similarity=0.499 Sum_probs=30.7
Q ss_pred hccCCCCCCeEEEEecCCCchHHHHHHHHHHHHhhh
Q 012492 55 MQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 55 ~~~~~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
.+.|....++|+++.+++|+|-.+-+..|.+.|++.
T Consensus 80 AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 80 AAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred HHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 555666778999999999999999999999999864
No 452
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=20.81 E-value=6.5e+02 Score=22.97 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=19.2
Q ss_pred CCceEEEEccCCH--HHHHHHhhccCCCCeEEeccc
Q 012492 302 PIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFE 335 (462)
Q Consensus 302 ~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~ 335 (462)
++...++..+... ...+.+++.+...++.++|+-
T Consensus 181 ~~~~aI~~~~d~~a~g~~~al~~~g~~~dv~vvg~d 216 (270)
T cd06308 181 PDIDLVYAHNDPMALGAYLAAKRAGREKEIKFIGID 216 (270)
T ss_pred CCCcEEEeCCcHHHHHHHHHHHHcCCCCCcEEEEec
Confidence 3444444433332 245666666766778888874
No 453
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=20.79 E-value=1.4e+02 Score=28.83 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhCCCEEEECCc
Q 012492 153 AKEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~ 173 (462)
...|.+++.+++||.||.+-.
T Consensus 56 ~~~L~~vf~~~~idaViHFAa 76 (329)
T COG1087 56 RALLTAVFEENKIDAVVHFAA 76 (329)
T ss_pred HHHHHHHHHhcCCCEEEECcc
Confidence 345668899999999987653
No 454
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=20.73 E-value=2.4e+02 Score=24.67 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=39.6
Q ss_pred hHHHHHHhcchhee----------cCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceee-eC--CHHHHHHHH
Q 012492 337 QMEKWMGACDCIIT----------KAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVF-TR--SPKETARIV 403 (462)
Q Consensus 337 ~~~~l~~~aD~vV~----------~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~-~~--~~~~la~~i 403 (462)
-+...+..||++|- +.....+-|.|-+++|+|++---..... -++.+...|..++ +. +.+.+...|
T Consensus 93 al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P-~v~~ik~~~~v~v~lt~~NR~~i~~~I 171 (179)
T COG1618 93 ALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHP-LVQRIKKLGGVYVFLTPENRNRILNEI 171 (179)
T ss_pred HHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCCh-HHHHhhhcCCEEEEEccchhhHHHHHH
Confidence 45566777899873 2235567889999999888753211000 1233444454433 33 345555666
Q ss_pred HHHh
Q 012492 404 TEWF 407 (462)
Q Consensus 404 ~~ll 407 (462)
..+|
T Consensus 172 l~~L 175 (179)
T COG1618 172 LSVL 175 (179)
T ss_pred HHHh
Confidence 6655
No 455
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=20.64 E-value=83 Score=29.70 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhCCCEEEECC
Q 012492 152 YAKEVEAGLMEYKPDIIISVH 172 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~ 172 (462)
+..++..++++++||+++.++
T Consensus 141 qp~~i~~Ll~~~~PDIlViTG 161 (283)
T TIGR02855 141 MPEKVLDLIEEVRPDILVITG 161 (283)
T ss_pred chHHHHHHHHHhCCCEEEEeC
Confidence 455777889999999988776
No 456
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=20.61 E-value=1.8e+02 Score=21.41 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=22.5
Q ss_pred EecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 68 LMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 68 ~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
+++..|.|-...+..|+..|++.|. .+.+.|
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~~g~---~v~~~~ 34 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAKRGK---RVLLID 34 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCC---eEEEEC
Confidence 3333388999999999999998753 445443
No 457
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=20.52 E-value=1e+03 Score=25.04 Aligned_cols=159 Identities=12% Similarity=-0.018 Sum_probs=73.7
Q ss_pred cEEEEcCHHHHHHHHHc--CCCCCcEEEcCCCCChhhhcccCCh----HHHHHHcCCCCCCcEEEEEe-CCCCC--ccHH
Q 012492 214 NRCYCPSKEVAKRASYF--GLEVSQIRVFGLPIRPSFVRAVISK----DNLRLELQMDPILPAVLLMG-GGEGM--GPVK 284 (462)
Q Consensus 214 d~~i~~s~~~~~~l~~~--gi~~~~i~v~g~pv~~~~~~~~~~~----~~~r~~l~l~~~~~~iLv~g-G~~~~--~~~~ 284 (462)
+.++-..+...+.+.+. -++++=|.|+...+. +.... |- .+++++..++.+.|++.+.. |-.|. .+..
T Consensus 121 ~aVfGG~~~L~e~I~~~~~~y~P~~I~V~tTC~~-evIGD--Di~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~~~Gyd 197 (515)
T TIGR01286 121 AAVFGGLKNMVDGLQNCYALYKPKMIAVSTTCMA-EVIGD--DLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSHITGYD 197 (515)
T ss_pred ceeeCcHHHHHHHHHHHHHhcCCCEEEEeCCcHH-HHhhc--cHHHHHHHHHHhcCCCCCCceEEeeCCCCcccHHHHHH
Confidence 34554444554444331 234444555554432 22211 21 22345555665666665532 22232 2345
Q ss_pred HHHHHHHHhhhcccC----CCCCceEEEEccCC------HHHHHHHhhccCCCCeE-----------------Eecc--c
Q 012492 285 ETAMALGESLLDKET----GRPIGQLIIICGRN------RTLASTLQSEEWKIPVK-----------------VRGF--E 335 (462)
Q Consensus 285 ~~l~~l~~~l~~~~~----~~~~~~~lvv~G~~------~~l~~~~~~~~~~~~V~-----------------~~g~--~ 335 (462)
..+..+++.+.+... +.++-.+-++.|-. .++++.++..|+..++. +.|- +
T Consensus 198 ~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~g~~~~~~ggttl 277 (515)
T TIGR01286 198 NMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTLLSDPEEVLDTPADGEFRMYAGGTTL 277 (515)
T ss_pred HHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCCeEEccCccccccCCCCCCccccCCCCCH
Confidence 566666666543110 11122233333332 24677777777654431 1121 2
Q ss_pred hhHHHHHHhc-chheecCChhhHHHHHH--hCCCEEEecCCCC
Q 012492 336 TQMEKWMGAC-DCIITKAGPGTIAEALI--RGLPIILNDYIPG 375 (462)
Q Consensus 336 ~~~~~l~~~a-D~vV~~sg~~t~~EAla--~G~PvI~~~~~~~ 375 (462)
+++...-++. .+++++..+..+.|.+. +|+|.+..+.+-|
T Consensus 278 eei~~a~~A~~~ivl~~~~~~~~a~~l~~~~g~p~~~~~~PiG 320 (515)
T TIGR01286 278 EEMKDAPNAEATVLLQPYTLRKTKEYIEKTWKQETPKLNIPLG 320 (515)
T ss_pred HHHHHhhhCcEEEEEchhhhHHHHHHHHHHhCCCcccCCCCcc
Confidence 4554433322 34445544445667665 8999888776544
No 458
>PHA02518 ParA-like protein; Provisional
Probab=20.41 E-value=1.9e+02 Score=25.55 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=28.3
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
-|.|...--|.|-.+.+.+||-+|.++| ..|.++|.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g---~~vlliD~ 37 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADG---HKVLLVDL 37 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCC---CeEEEEeC
Confidence 4566665566799999999999999886 47787875
No 459
>PRK08118 topology modulation protein; Reviewed
Probab=20.40 E-value=1.2e+02 Score=26.39 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=18.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHh
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFK 88 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~ 88 (462)
|+||+|++++ |.|-.+.|..|++.+.
T Consensus 1 m~rI~I~G~~-GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 1 MKKIILIGSG-GSGKSTLARQLGEKLN 26 (167)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHhC
Confidence 5788877644 3688887777777664
No 460
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=20.19 E-value=1.9e+02 Score=25.63 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=23.4
Q ss_pred HHHHHHHHhhCCCEEEECCcccchHHHHHHHH
Q 012492 154 KEVEAGLMEYKPDIIISVHPLMQHIPLWVLKW 185 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~ 185 (462)
.++.+++++++||+|++.....-.++.+..|.
T Consensus 53 ~~F~~~i~~~dPd~i~gyN~~~FDlpyl~~Ra 84 (188)
T cd05781 53 REFVKYVKEYDPDIIVGYNSNAFDWPYLVERA 84 (188)
T ss_pred HHHHHHHHHcCCCEEEecCCCcCcHHHHHHHH
Confidence 34567899999999999887655555555554
No 461
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=20.15 E-value=1.4e+02 Score=29.61 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=38.5
Q ss_pred CCCcccCC-CCCCCccc-ccchhh---hccCCCCCCeEEEEecCCCchHHHHHHHHHHHHhh
Q 012492 33 NLGCSFDS-DDDCEEDD-ESTVEL---MQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKI 89 (462)
Q Consensus 33 ~~~~~~~~-~~~~~~~~-~~~~~~---~~~~~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~ 89 (462)
-+++.|-+ +.-|.+|. +..++. ...|.....+|+.+++..|+|-.+.|.+|++.|..
T Consensus 43 ~~~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 43 IKRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred eeeccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34554444 66664333 333433 22333455799999999999999999999999976
No 462
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.12 E-value=1.9e+02 Score=22.20 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=23.5
Q ss_pred HHHHHhhCCCEEEECCccc--chHH-HHHHHHcCCCCCCeEEEEec
Q 012492 157 EAGLMEYKPDIIISVHPLM--QHIP-LWVLKWQGLQKKVIFVTVIT 199 (462)
Q Consensus 157 ~~~l~~~kPDvVi~~~~~~--~~~~-~~~~~~~~~~~~iP~v~~~~ 199 (462)
.+.+++.+||+|+.+.... .+.. +...+... .++|+|.+..
T Consensus 36 ~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~~t~ 79 (112)
T PF00072_consen 36 LELLKKHPPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIVVTD 79 (112)
T ss_dssp HHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEEEES
T ss_pred HHHhcccCceEEEEEeeecccccccccccccccc--ccccEEEecC
Confidence 3557888999999886432 2221 11223222 4788876543
No 463
>PRK11617 endonuclease V; Provisional
Probab=20.10 E-value=85 Score=28.87 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=20.2
Q ss_pred hCCCEEEECCcccchH-HHHHHHHcCCCCCCeEEEE
Q 012492 163 YKPDIIISVHPLMQHI-PLWVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~-~~~~~~~~~~~~~iP~v~~ 197 (462)
.+||+|++++.-..+. -+.+|...|...++|+|.+
T Consensus 96 ~~PdlllvDG~G~~HPR~~GlA~HlGv~~~~PtIGV 131 (224)
T PRK11617 96 QKPDLVFVDGHGIAHPRRLGVASHFGLLVDVPTIGV 131 (224)
T ss_pred cCCCEEEEcCceeECCCCcceeeEEEeecCCCEEEE
Confidence 4899999998332221 0112333444568888865
Done!