Query 012492
Match_columns 462
No_of_seqs 205 out of 2537
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s2u_A UDP-N-acetylglucosamine 100.0 1.6E-37 5.4E-42 308.6 31.7 340 61-443 1-357 (365)
2 1f0k_A MURG, UDP-N-acetylgluco 100.0 1.5E-31 5.2E-36 264.9 32.5 341 63-444 7-357 (364)
3 1vgv_A UDP-N-acetylglucosamine 100.0 4.4E-29 1.5E-33 249.0 27.2 349 63-444 1-376 (384)
4 3c48_A Predicted glycosyltrans 100.0 1E-28 3.5E-33 250.7 25.7 268 160-442 117-423 (438)
5 3beo_A UDP-N-acetylglucosamine 100.0 9.8E-28 3.3E-32 238.3 29.2 274 152-443 83-375 (375)
6 3dzc_A UDP-N-acetylglucosamine 100.0 8.5E-28 2.9E-32 240.9 28.2 273 151-438 98-395 (396)
7 1v4v_A UDP-N-acetylglucosamine 100.0 6.5E-28 2.2E-32 240.0 23.3 272 153-444 80-368 (376)
8 2jjm_A Glycosyl transferase, g 100.0 2.2E-27 7.4E-32 237.8 25.5 349 62-443 15-384 (394)
9 3ot5_A UDP-N-acetylglucosamine 100.0 7.6E-27 2.6E-31 234.4 27.9 276 151-444 101-395 (403)
10 2x6q_A Trehalose-synthase TRET 100.0 2.2E-26 7.6E-31 232.1 30.7 343 61-443 39-413 (416)
11 2r60_A Glycosyl transferase, g 100.0 1.2E-27 4E-32 247.4 21.8 275 154-442 108-457 (499)
12 3fro_A GLGA glycogen synthase; 100.0 1.8E-26 6.2E-31 233.5 29.3 267 162-444 120-430 (439)
13 2gek_A Phosphatidylinositol ma 100.0 2.4E-26 8.4E-31 230.4 28.8 340 61-443 19-382 (406)
14 3okp_A GDP-mannose-dependent a 100.0 6.9E-27 2.4E-31 233.4 24.7 344 61-445 3-380 (394)
15 3otg_A CALG1; calicheamicin, T 100.0 3.4E-27 1.2E-31 237.7 21.5 345 61-444 19-410 (412)
16 2iw1_A Lipopolysaccharide core 99.9 3.4E-27 1.2E-31 234.0 16.6 342 63-443 1-370 (374)
17 3oy2_A Glycosyltransferase B73 99.9 7.2E-25 2.5E-29 220.7 31.9 335 63-443 1-389 (413)
18 3rsc_A CALG2; TDP, enediyne, s 99.9 1.3E-25 4.5E-30 226.4 26.0 352 57-443 15-414 (415)
19 3ia7_A CALG4; glycosysltransfe 99.9 8.3E-25 2.8E-29 219.2 28.8 346 61-444 3-400 (402)
20 4fzr_A SSFS6; structural genom 99.9 8.4E-26 2.9E-30 226.7 17.8 346 59-439 12-397 (398)
21 2iyf_A OLED, oleandomycin glyc 99.9 4.9E-25 1.7E-29 223.3 22.7 341 61-444 6-401 (430)
22 1rzu_A Glycogen synthase 1; gl 99.9 1.4E-24 4.8E-29 223.3 25.6 265 161-443 127-474 (485)
23 2qzs_A Glycogen synthase; glyc 99.9 1E-23 3.4E-28 217.0 29.7 271 154-443 115-475 (485)
24 3oti_A CALG3; calicheamicin, T 99.9 1.3E-24 4.6E-29 218.0 21.4 347 60-442 18-397 (398)
25 3tsa_A SPNG, NDP-rhamnosyltran 99.9 1.4E-24 4.8E-29 217.1 20.1 351 63-444 2-390 (391)
26 2iya_A OLEI, oleandomycin glyc 99.9 1E-22 3.4E-27 206.0 27.7 166 266-443 253-422 (424)
27 2p6p_A Glycosyl transferase; X 99.9 1.3E-22 4.3E-27 202.5 26.5 165 266-443 208-380 (384)
28 4hwg_A UDP-N-acetylglucosamine 99.9 7E-24 2.4E-28 211.1 16.6 273 151-442 81-375 (385)
29 4amg_A Snogd; transferase, pol 99.9 1.3E-22 4.4E-27 203.3 24.4 168 262-441 231-399 (400)
30 3s28_A Sucrose synthase 1; gly 99.9 9.9E-24 3.4E-28 226.4 15.0 267 163-442 406-767 (816)
31 2iuy_A Avigt4, glycosyltransfe 99.9 1.4E-22 4.9E-27 198.7 20.8 295 61-443 2-334 (342)
32 2yjn_A ERYCIII, glycosyltransf 99.9 2.2E-22 7.5E-27 204.7 21.9 171 262-444 261-437 (441)
33 1iir_A Glycosyltransferase GTF 99.9 3.5E-21 1.2E-25 194.3 27.5 162 266-444 236-402 (415)
34 3h4t_A Glycosyltransferase GTF 99.9 4.5E-21 1.5E-25 192.8 24.7 172 256-446 211-386 (404)
35 1rrv_A Glycosyltransferase GTF 99.9 6.1E-21 2.1E-25 192.5 24.1 189 236-444 210-403 (416)
36 2xci_A KDO-transferase, 3-deox 99.9 9.8E-22 3.4E-26 195.4 16.9 311 63-435 41-372 (374)
37 2vsy_A XCC0866; transferase, g 99.9 4.1E-21 1.4E-25 201.4 20.6 337 59-443 202-558 (568)
38 3vue_A GBSS-I, granule-bound s 99.9 6.4E-19 2.2E-23 182.8 34.3 217 212-443 241-510 (536)
39 3hbm_A UDP-sugar hydrolase; PS 99.8 8E-20 2.7E-24 173.1 17.4 267 63-395 1-274 (282)
40 2x0d_A WSAF; GT4 family, trans 99.8 5.8E-20 2E-24 184.9 12.6 246 162-436 130-402 (413)
41 2hy7_A Glucuronosyltransferase 99.8 5E-18 1.7E-22 170.6 15.3 222 164-440 124-373 (406)
42 2acv_A Triterpene UDP-glucosyl 99.7 1.7E-16 5.8E-21 162.0 24.8 339 61-420 8-436 (463)
43 2c1x_A UDP-glucose flavonoid 3 99.7 3.8E-16 1.3E-20 159.0 26.3 156 258-424 261-425 (456)
44 2bfw_A GLGA glycogen synthase; 99.7 1.4E-16 4.6E-21 143.6 15.8 172 240-426 2-197 (200)
45 1uqt_A Alpha, alpha-trehalose- 99.7 2.2E-15 7.7E-20 153.8 24.2 263 164-444 123-454 (482)
46 2o6l_A UDP-glucuronosyltransfe 99.7 2.4E-16 8.3E-21 138.5 14.4 150 257-421 10-165 (170)
47 2pq6_A UDP-glucuronosyl/UDP-gl 99.7 4.3E-15 1.5E-19 152.4 24.8 156 258-424 285-452 (482)
48 3qhp_A Type 1 capsular polysac 99.6 8.3E-16 2.8E-20 134.1 11.0 152 270-435 3-165 (166)
49 3hbf_A Flavonoid 3-O-glucosylt 99.6 3.9E-14 1.3E-18 143.2 23.7 165 236-411 241-415 (454)
50 3rhz_A GTF3, nucleotide sugar 99.6 8.9E-15 3E-19 142.6 18.2 236 162-440 72-337 (339)
51 2vch_A Hydroquinone glucosyltr 99.6 4.1E-14 1.4E-18 144.9 21.3 175 235-419 234-441 (480)
52 3t5t_A Putative glycosyltransf 99.6 4.6E-13 1.6E-17 135.6 27.8 276 148-441 133-470 (496)
53 3nb0_A Glycogen [starch] synth 99.6 1.8E-13 6.3E-18 141.2 24.8 101 337-442 511-631 (725)
54 2f9f_A First mannosyl transfer 99.6 2.5E-14 8.4E-19 126.4 13.4 148 262-423 17-176 (177)
55 2jzc_A UDP-N-acetylglucosamine 99.4 6E-14 2.1E-18 127.5 6.4 138 262-406 22-196 (224)
56 3q3e_A HMW1C-like glycosyltran 99.1 3.4E-09 1.2E-13 109.0 20.7 270 153-442 338-625 (631)
57 1psw_A ADP-heptose LPS heptosy 98.6 8.3E-07 2.8E-11 86.4 14.7 113 255-373 167-289 (348)
58 3tov_A Glycosyl transferase fa 98.6 3.3E-05 1.1E-09 75.3 25.9 266 61-373 7-289 (349)
59 4gyw_A UDP-N-acetylglucosamine 98.4 4.5E-06 1.6E-10 89.3 15.4 176 259-441 514-702 (723)
60 3l7i_A Teichoic acid biosynthe 98.3 1E-05 3.5E-10 86.9 16.9 223 213-444 479-721 (729)
61 2gt1_A Lipopolysaccharide hept 98.1 0.00012 3.9E-09 70.5 17.7 97 267-372 177-280 (326)
62 1rcu_A Conserved hypothetical 90.4 2.8 9.5E-05 36.4 11.1 67 339-406 113-192 (195)
63 3sbx_A Putative uncharacterize 88.7 4.3 0.00015 35.1 11.0 37 337-373 101-147 (189)
64 2iz6_A Molybdenum cofactor car 88.6 0.88 3E-05 39.0 6.4 64 340-407 103-172 (176)
65 3ehd_A Uncharacterized conserv 87.0 2.1 7.1E-05 36.0 7.7 68 340-407 65-161 (162)
66 1ydh_A AT5G11950; structural g 86.4 6.1 0.00021 34.9 10.8 69 339-407 100-188 (216)
67 1t35_A Hypothetical protein YV 86.2 5.2 0.00018 34.6 10.1 67 338-405 91-178 (191)
68 3qua_A Putative uncharacterize 85.3 3.8 0.00013 35.7 8.8 36 338-373 111-156 (199)
69 2ywr_A Phosphoribosylglycinami 85.2 4.9 0.00017 35.5 9.7 27 62-92 1-27 (216)
70 2khz_A C-MYC-responsive protei 84.0 2.9 0.0001 35.3 7.3 67 340-407 73-149 (165)
71 1s2d_A Purine trans deoxyribos 84.0 0.72 2.5E-05 39.2 3.4 32 340-371 77-116 (167)
72 2a33_A Hypothetical protein; s 83.6 8.3 0.00028 34.0 10.3 68 339-406 104-191 (215)
73 3auf_A Glycinamide ribonucleot 83.3 21 0.00073 31.6 13.0 26 61-90 21-46 (229)
74 3ro0_A Pyrrolidone-carboxylate 82.2 1.8 6.2E-05 38.5 5.4 30 61-90 1-31 (223)
75 3bq9_A Predicted rossmann fold 81.9 6.1 0.00021 38.8 9.4 69 339-407 240-330 (460)
76 2oho_A Glutamate racemase; iso 80.3 19 0.00065 32.9 12.0 40 57-102 5-46 (273)
77 3p9x_A Phosphoribosylglycinami 77.6 12 0.0004 32.9 9.1 21 153-173 70-90 (211)
78 3kcq_A Phosphoribosylglycinami 76.6 24 0.00083 30.9 11.0 26 61-90 7-32 (215)
79 3da8_A Probable 5'-phosphoribo 76.1 9.7 0.00033 33.5 8.2 27 59-89 9-35 (215)
80 4fyk_A Deoxyribonucleoside 5'- 74.9 7.3 0.00025 32.2 6.6 67 339-407 63-140 (152)
81 4ds3_A Phosphoribosylglycinami 74.8 16 0.00054 32.0 9.2 20 154-173 76-95 (209)
82 3igf_A ALL4481 protein; two-do 74.4 12 0.00042 36.0 9.2 38 62-102 1-38 (374)
83 2a5l_A Trp repressor binding p 71.7 5.9 0.0002 34.0 5.7 41 60-103 3-43 (200)
84 4hps_A Pyrrolidone-carboxylate 71.4 5.2 0.00018 35.6 5.3 32 59-90 20-52 (228)
85 3tqr_A Phosphoribosylglycinami 71.1 22 0.00076 31.2 9.3 21 153-173 72-92 (215)
86 3f6r_A Flavodoxin; FMN binding 70.7 6.3 0.00021 32.0 5.4 38 62-102 1-38 (148)
87 3av3_A Phosphoribosylglycinami 70.7 53 0.0018 28.6 12.7 25 62-90 3-27 (212)
88 2f62_A Nucleoside 2-deoxyribos 70.1 7.1 0.00024 32.7 5.6 34 339-372 62-106 (161)
89 2gj4_A Glycogen phosphorylase, 69.4 53 0.0018 34.9 13.1 67 328-399 630-707 (824)
90 2l2q_A PTS system, cellobiose- 69.1 10 0.00035 29.2 6.0 68 303-371 4-83 (109)
91 2vvt_A Glutamate racemase; iso 69.0 50 0.0017 30.3 11.8 34 63-102 25-58 (290)
92 3ist_A Glutamate racemase; str 69.0 49 0.0017 30.1 11.5 93 62-197 5-97 (269)
93 1wek_A Hypothetical protein TT 67.7 25 0.00087 30.9 8.9 65 340-406 127-213 (217)
94 3uhf_A Glutamate racemase; str 67.1 36 0.0012 31.0 10.2 93 62-197 24-116 (274)
95 1x10_A Pyrrolidone-carboxylate 66.6 11 0.00036 33.1 6.2 36 63-98 1-37 (208)
96 3lac_A Pyrrolidone-carboxylate 66.6 6.8 0.00023 34.5 4.9 29 62-90 1-30 (215)
97 1a2z_A Pyrrolidone carboxyl pe 66.5 9.4 0.00032 33.8 5.8 37 62-98 1-38 (220)
98 4gxh_A Pyrrolidone-carboxylate 66.0 7.2 0.00025 34.4 5.0 29 62-90 2-31 (216)
99 1l5w_A Maltodextrin phosphoryl 64.6 1E+02 0.0036 32.6 14.1 68 328-400 606-684 (796)
100 2ark_A Flavodoxin; FMN, struct 64.6 11 0.00038 32.1 5.9 40 60-102 2-42 (188)
101 1ydg_A Trp repressor binding p 63.6 11 0.00039 32.6 5.9 40 61-103 5-44 (211)
102 1zuw_A Glutamate racemase 1; ( 61.6 89 0.003 28.3 11.8 34 63-102 4-37 (272)
103 2zki_A 199AA long hypothetical 60.3 15 0.0005 31.4 6.0 38 61-102 3-40 (199)
104 2vzf_A NADH-dependent FMN redu 60.0 15 0.00052 31.5 6.0 39 61-102 1-42 (197)
105 3k9g_A PF-32 protein; ssgcid, 57.7 7.9 0.00027 35.0 3.9 51 48-102 13-63 (267)
106 2jfz_A Glutamate racemase; cel 57.6 61 0.0021 29.0 9.9 34 63-102 1-34 (255)
107 3of5_A Dethiobiotin synthetase 56.7 10 0.00035 33.6 4.4 33 60-92 2-34 (228)
108 3b6i_A Flavoprotein WRBA; flav 56.0 18 0.0006 30.8 5.7 37 62-102 1-39 (198)
109 1jkx_A GART;, phosphoribosylgl 55.7 1E+02 0.0035 26.7 12.9 24 63-90 1-24 (212)
110 1f8y_A Nucleoside 2-deoxyribos 55.3 8.4 0.00029 32.1 3.3 33 340-372 74-114 (157)
111 1xmp_A PURE, phosphoribosylami 54.9 93 0.0032 26.0 9.5 84 336-421 53-156 (170)
112 3gh1_A Predicted nucleotide-bi 54.6 45 0.0016 32.5 8.6 70 338-407 241-332 (462)
113 3ksm_A ABC-type sugar transpor 54.3 1.1E+02 0.0038 26.7 12.3 20 316-335 202-221 (276)
114 1u11_A PURE (N5-carboxyaminoim 53.1 1E+02 0.0035 26.0 9.9 84 336-421 63-166 (182)
115 3kjh_A CO dehydrogenase/acetyl 51.8 14 0.00048 32.6 4.5 36 63-102 1-36 (254)
116 3end_A Light-independent proto 51.7 18 0.0006 33.4 5.3 58 42-102 18-77 (307)
117 3giu_A Pyrrolidone-carboxylate 51.3 18 0.00062 31.8 4.9 29 62-90 3-32 (215)
118 3tb6_A Arabinose metabolism tr 51.1 1.3E+02 0.0045 26.6 12.5 156 158-335 65-237 (298)
119 3p0r_A Azoreductase; structura 50.9 16 0.00055 31.8 4.6 44 60-104 2-49 (211)
120 3hly_A Flavodoxin-like domain; 50.5 20 0.00068 29.6 5.0 36 63-101 1-36 (161)
121 2hna_A Protein MIOC, flavodoxi 50.0 15 0.00052 29.6 4.1 31 62-92 1-31 (147)
122 1b73_A Glutamate racemase; iso 49.6 74 0.0025 28.4 9.0 34 63-102 1-34 (254)
123 1meo_A Phosophoribosylglycinam 48.7 1.3E+02 0.0045 25.9 11.4 20 154-173 69-88 (209)
124 3n0v_A Formyltetrahydrofolate 48.3 1.4E+02 0.0049 27.2 10.8 21 153-173 155-175 (286)
125 2jfq_A Glutamate racemase; cel 48.0 1.4E+02 0.0048 27.1 10.8 34 63-102 23-56 (286)
126 1f4p_A Flavodoxin; electron tr 47.1 31 0.0011 27.5 5.6 36 63-101 1-36 (147)
127 2gzm_A Glutamate racemase; enz 47.0 1.5E+02 0.0052 26.5 10.8 34 63-102 4-37 (267)
128 3zq6_A Putative arsenical pump 46.9 22 0.00074 33.3 5.1 39 61-102 12-50 (324)
129 1g3q_A MIND ATPase, cell divis 46.3 22 0.00076 31.0 4.9 36 64-102 4-39 (237)
130 3s2u_A UDP-N-acetylglucosamine 46.2 61 0.0021 30.6 8.4 28 344-371 92-122 (365)
131 3dfz_A SIRC, precorrin-2 dehyd 46.2 45 0.0016 29.3 6.8 64 303-373 54-124 (223)
132 3u7i_A FMN-dependent NADH-azor 45.2 41 0.0014 29.5 6.4 44 60-104 2-51 (223)
133 3lp6_A Phosphoribosylaminoimid 45.0 1.4E+02 0.0047 25.1 10.3 77 343-421 61-150 (174)
134 3fni_A Putative diflavin flavo 44.5 42 0.0014 27.6 6.0 40 60-102 2-41 (159)
135 1vi6_A 30S ribosomal protein S 44.5 46 0.0016 29.0 6.3 48 163-220 114-161 (208)
136 3qxc_A Dethiobiotin synthetase 44.4 21 0.00072 32.0 4.4 30 63-92 22-51 (242)
137 3lou_A Formyltetrahydrofolate 44.2 1.6E+02 0.0055 27.0 10.5 20 154-173 161-180 (292)
138 1hyq_A MIND, cell division inh 44.0 26 0.00088 31.3 5.0 37 63-102 3-39 (263)
139 2m1z_A LMO0427 protein; homolo 44.0 43 0.0015 25.7 5.4 31 62-92 2-34 (106)
140 1ykg_A SIR-FP, sulfite reducta 44.0 18 0.00063 30.0 3.7 32 61-92 8-39 (167)
141 3ug7_A Arsenical pump-driving 43.9 29 0.00098 32.9 5.5 39 60-101 23-61 (349)
142 3bch_A 40S ribosomal protein S 43.7 46 0.0016 29.9 6.3 48 163-220 150-197 (253)
143 3out_A Glutamate racemase; str 43.5 1.7E+02 0.006 26.3 10.5 34 63-102 8-41 (268)
144 2ph1_A Nucleotide-binding prot 43.3 31 0.0011 30.9 5.5 37 63-102 19-55 (262)
145 3obi_A Formyltetrahydrofolate 43.2 1.9E+02 0.0067 26.3 11.6 20 154-173 156-175 (288)
146 2dwu_A Glutamate racemase; iso 43.0 1.5E+02 0.0053 26.7 10.2 34 63-102 8-41 (276)
147 1iow_A DD-ligase, DDLB, D-ALA\ 42.8 30 0.001 31.6 5.4 38 62-102 2-42 (306)
148 1t5b_A Acyl carrier protein ph 42.7 44 0.0015 28.2 6.2 42 62-104 1-45 (201)
149 3qk7_A Transcriptional regulat 42.6 1.8E+02 0.0063 25.8 13.8 152 158-335 59-223 (294)
150 3h5t_A Transcriptional regulat 42.6 2.1E+02 0.0071 26.5 12.6 71 158-241 122-196 (366)
151 4eg0_A D-alanine--D-alanine li 42.5 29 0.00099 32.1 5.3 41 58-101 9-52 (317)
152 3qjg_A Epidermin biosynthesis 42.2 43 0.0015 28.3 5.7 57 339-396 71-148 (175)
153 3h75_A Periplasmic sugar-bindi 41.8 2.1E+02 0.0071 26.2 18.3 36 62-100 3-40 (350)
154 3czc_A RMPB; alpha/beta sandwi 41.5 46 0.0016 25.5 5.4 33 58-91 14-47 (110)
155 4dzz_A Plasmid partitioning pr 41.5 24 0.00081 30.0 4.2 36 64-102 3-38 (206)
156 3q9l_A Septum site-determining 41.5 27 0.00094 30.9 4.8 38 62-102 1-39 (260)
157 3uqz_A DNA processing protein 41.4 1.3E+02 0.0046 27.5 9.3 49 352-401 228-278 (288)
158 1iu8_A Pyrrolidone-carboxylate 41.1 39 0.0013 29.4 5.5 28 63-90 1-29 (206)
159 3fgn_A Dethiobiotin synthetase 41.0 27 0.00091 31.5 4.5 32 61-92 25-56 (251)
160 3o1l_A Formyltetrahydrofolate 40.9 1.5E+02 0.0051 27.3 9.7 20 154-173 171-190 (302)
161 3bbn_B Ribosomal protein S2; s 40.5 56 0.0019 28.9 6.4 31 164-198 157-187 (231)
162 3u7r_A NADPH-dependent FMN red 40.4 24 0.00081 30.3 3.9 41 61-103 1-41 (190)
163 3nrb_A Formyltetrahydrofolate 40.2 2.2E+02 0.0074 26.0 13.9 20 154-173 155-174 (287)
164 2q62_A ARSH; alpha/beta, flavo 39.9 66 0.0022 28.7 7.0 46 55-103 27-74 (247)
165 3ors_A N5-carboxyaminoimidazol 39.8 1.6E+02 0.0055 24.4 9.6 30 345-374 59-91 (163)
166 3k9c_A Transcriptional regulat 39.7 2E+02 0.0069 25.4 11.5 147 160-335 62-221 (289)
167 2zkq_b 40S ribosomal protein S 38.9 52 0.0018 30.2 6.1 48 163-220 117-164 (295)
168 3f2v_A General stress protein 38.9 19 0.00065 31.0 3.0 39 62-103 1-39 (192)
169 3ea0_A ATPase, para family; al 38.9 33 0.0011 30.0 4.9 38 62-102 4-42 (245)
170 3l6u_A ABC-type sugar transpor 38.8 2E+02 0.007 25.3 12.0 37 61-100 7-44 (293)
171 3lp8_A Phosphoribosylamine-gly 38.4 87 0.003 30.6 8.2 43 50-100 10-52 (442)
172 1fy2_A Aspartyl dipeptidase; s 38.4 69 0.0024 28.1 6.8 54 317-372 54-121 (229)
173 3f6p_A Transcriptional regulat 38.4 51 0.0018 24.8 5.4 40 158-197 40-79 (120)
174 3nhm_A Response regulator; pro 38.4 86 0.0029 23.8 6.9 42 158-199 41-85 (133)
175 3trh_A Phosphoribosylaminoimid 38.2 1.7E+02 0.006 24.3 10.3 77 344-422 61-152 (169)
176 2c4m_A Glycogen phosphorylase; 37.7 3.9E+02 0.013 28.2 17.6 44 328-371 596-647 (796)
177 3kjx_A Transcriptional regulat 37.3 2.4E+02 0.0083 25.7 13.1 36 159-198 119-154 (344)
178 1wcv_1 SOJ, segregation protei 37.1 33 0.0011 30.6 4.5 38 62-102 6-43 (257)
179 3en0_A Cyanophycinase; serine 37.1 1E+02 0.0035 28.2 7.9 96 270-371 28-152 (291)
180 2vqe_B 30S ribosomal protein S 36.1 48 0.0016 29.9 5.3 32 163-198 157-188 (256)
181 3j20_B 30S ribosomal protein S 36.1 64 0.0022 27.9 5.9 47 163-220 110-157 (202)
182 3r6w_A FMN-dependent NADH-azor 35.8 47 0.0016 28.6 5.2 42 62-104 1-45 (212)
183 1e2b_A Enzyme IIB-cellobiose; 35.4 36 0.0012 26.0 3.8 48 305-353 5-59 (106)
184 3g1w_A Sugar ABC transporter; 35.2 2.4E+02 0.0082 25.0 19.9 35 62-99 4-39 (305)
185 1sqs_A Conserved hypothetical 35.0 60 0.0021 28.6 5.9 39 62-103 1-42 (242)
186 2hpv_A FMN-dependent NADH-azor 34.9 67 0.0023 27.4 6.1 41 62-103 1-45 (208)
187 1qv9_A F420-dependent methylen 34.6 44 0.0015 29.6 4.6 40 158-197 58-97 (283)
188 3gbv_A Putative LACI-family tr 34.1 2.4E+02 0.0084 24.8 16.5 167 158-345 63-244 (304)
189 3iqw_A Tail-anchored protein t 33.7 47 0.0016 31.2 5.1 38 61-101 14-51 (334)
190 1eiw_A Hypothetical protein MT 33.6 50 0.0017 25.5 4.4 66 340-407 34-108 (111)
191 3ius_A Uncharacterized conserv 33.5 46 0.0016 29.9 5.0 32 61-101 4-35 (286)
192 2pn1_A Carbamoylphosphate synt 33.5 45 0.0015 30.9 5.0 35 61-103 3-37 (331)
193 3k4h_A Putative transcriptiona 33.4 2.5E+02 0.0085 24.7 14.1 154 157-335 62-228 (292)
194 3fvw_A Putative NAD(P)H-depend 32.2 33 0.0011 29.2 3.5 39 61-103 1-41 (192)
195 3rpe_A MDAB, modulator of drug 32.1 64 0.0022 28.3 5.4 39 61-102 24-68 (218)
196 3h5o_A Transcriptional regulat 31.9 2.9E+02 0.01 25.1 14.2 154 158-335 112-275 (339)
197 3bfv_A CAPA1, CAPB2, membrane 31.5 65 0.0022 29.1 5.6 38 62-102 82-119 (271)
198 2woo_A ATPase GET3; tail-ancho 30.9 53 0.0018 30.6 5.0 37 62-101 18-54 (329)
199 3gv0_A Transcriptional regulat 30.8 2.8E+02 0.0095 24.4 13.4 74 158-244 60-137 (288)
200 4ici_A Putative flavoprotein; 30.8 42 0.0014 28.0 3.9 28 59-87 10-38 (171)
201 1cp2_A CP2, nitrogenase iron p 30.8 47 0.0016 29.6 4.5 37 62-102 1-37 (269)
202 4b4o_A Epimerase family protei 30.7 57 0.002 29.5 5.2 30 63-100 1-30 (298)
203 4etm_A LMPTP, low molecular we 30.7 72 0.0025 26.7 5.3 30 58-89 14-44 (173)
204 3r6d_A NAD-dependent epimerase 30.7 69 0.0024 27.4 5.5 34 61-101 3-37 (221)
205 3oid_A Enoyl-[acyl-carrier-pro 30.5 88 0.003 27.7 6.3 19 427-445 214-232 (258)
206 1d4a_A DT-diaphorase, quinone 30.3 84 0.0029 28.4 6.2 40 62-104 2-43 (273)
207 3dbi_A Sugar-binding transcrip 30.1 3.1E+02 0.011 24.8 12.8 152 158-335 113-278 (338)
208 1byi_A Dethiobiotin synthase; 30.1 55 0.0019 28.1 4.7 36 63-101 2-37 (224)
209 2jfn_A Glutamate racemase; cel 30.0 3.1E+02 0.011 24.7 11.1 36 61-102 20-55 (285)
210 3nbm_A PTS system, lactose-spe 29.8 43 0.0015 25.7 3.4 68 303-372 6-86 (108)
211 2afh_E Nitrogenase iron protei 29.7 53 0.0018 29.7 4.7 37 62-102 2-38 (289)
212 1bvy_F Protein (cytochrome P45 29.7 53 0.0018 28.0 4.4 32 61-92 20-51 (191)
213 2xj4_A MIPZ; replication, cell 29.7 46 0.0016 30.2 4.3 38 62-102 3-41 (286)
214 3fkq_A NTRC-like two-domain pr 29.5 63 0.0022 30.7 5.4 39 61-102 142-180 (373)
215 4fb5_A Probable oxidoreductase 29.4 90 0.0031 29.4 6.5 66 301-372 54-126 (393)
216 3egc_A Putative ribose operon 29.4 2.9E+02 0.01 24.2 18.1 152 158-335 58-222 (291)
217 3rfo_A Methionyl-tRNA formyltr 29.1 89 0.003 29.1 6.2 17 157-173 75-91 (317)
218 3e3m_A Transcriptional regulat 29.0 3.4E+02 0.012 24.8 14.0 154 158-335 120-286 (355)
219 3huu_A Transcription regulator 28.8 3.1E+02 0.011 24.3 10.6 74 157-243 76-153 (305)
220 3i42_A Response regulator rece 28.7 71 0.0024 24.1 4.7 42 158-199 41-85 (127)
221 2kyr_A Fructose-like phosphotr 28.7 93 0.0032 24.0 5.1 32 61-92 4-37 (111)
222 3d7n_A Flavodoxin, WRBA-like p 28.6 44 0.0015 28.3 3.7 29 60-89 4-33 (193)
223 2l2q_A PTS system, cellobiose- 28.4 77 0.0026 24.1 4.7 29 63-92 5-33 (109)
224 2xzm_B RPS0E; ribosome, transl 28.3 49 0.0017 29.5 3.9 32 163-198 113-144 (241)
225 1jx7_A Hypothetical protein YC 28.1 64 0.0022 24.4 4.3 31 62-92 1-34 (117)
226 3o74_A Fructose transport syst 28.0 2.9E+02 0.01 23.8 14.6 39 158-200 52-91 (272)
227 3edo_A Flavoprotein, putative 28.0 39 0.0013 27.4 3.1 27 61-88 2-29 (151)
228 3cio_A ETK, tyrosine-protein k 27.9 81 0.0028 28.9 5.7 38 62-102 104-141 (299)
229 4gi5_A Quinone reductase; prot 27.4 98 0.0033 28.2 6.0 41 61-104 21-63 (280)
230 1e6c_A Shikimate kinase; phosp 27.4 42 0.0015 27.4 3.3 26 62-87 1-26 (173)
231 2bmv_A Flavodoxin; electron tr 27.3 50 0.0017 27.0 3.7 26 62-87 1-26 (164)
232 1p3y_1 MRSD protein; flavoprot 27.3 48 0.0016 28.5 3.6 53 340-392 77-149 (194)
233 3guy_A Short-chain dehydrogena 26.9 1.1E+02 0.0037 26.4 6.1 70 270-353 3-81 (230)
234 3to5_A CHEY homolog; alpha(5)b 26.4 1.7E+02 0.0058 23.0 6.7 40 158-197 51-93 (134)
235 1o4v_A Phosphoribosylaminoimid 26.3 2.9E+02 0.01 23.3 10.1 77 345-423 69-158 (183)
236 1e4e_A Vancomycin/teicoplanin 26.1 62 0.0021 30.2 4.6 39 62-103 3-44 (343)
237 3dm5_A SRP54, signal recogniti 26.1 3.2E+02 0.011 26.6 9.8 30 63-92 100-129 (443)
238 3iz6_A 40S ribosomal protein S 25.9 82 0.0028 29.0 5.0 48 163-220 121-168 (305)
239 1xjc_A MOBB protein homolog; s 25.8 89 0.003 26.1 5.0 30 62-91 3-32 (169)
240 3ic5_A Putative saccharopine d 25.6 96 0.0033 23.0 4.9 33 61-101 4-36 (118)
241 1qf9_A UMP/CMP kinase, protein 25.4 66 0.0023 26.6 4.3 27 61-87 4-30 (194)
242 3dty_A Oxidoreductase, GFO/IDH 25.4 4E+02 0.014 25.1 10.5 66 302-371 38-116 (398)
243 2h31_A Multifunctional protein 25.0 4.7E+02 0.016 25.3 10.5 115 305-421 267-406 (425)
244 1zgz_A Torcad operon transcrip 25.0 1.1E+02 0.0039 22.5 5.3 16 159-174 41-56 (122)
245 2qv0_A Protein MRKE; structura 24.9 1.5E+02 0.0053 22.6 6.3 16 159-174 50-65 (143)
246 3la6_A Tyrosine-protein kinase 24.6 96 0.0033 28.2 5.4 38 62-102 92-129 (286)
247 3pg5_A Uncharacterized protein 24.5 51 0.0017 31.2 3.7 37 63-102 2-38 (361)
248 1tvm_A PTS system, galactitol- 24.4 1.5E+02 0.0051 22.6 5.8 31 61-92 20-51 (113)
249 2woj_A ATPase GET3; tail-ancho 24.4 83 0.0028 29.7 5.1 37 62-101 17-55 (354)
250 1gsa_A Glutathione synthetase; 24.2 44 0.0015 30.4 3.1 37 62-102 1-40 (316)
251 3r5x_A D-alanine--D-alanine li 24.2 70 0.0024 29.1 4.5 38 61-102 2-43 (307)
252 2iks_A DNA-binding transcripti 24.1 3.7E+02 0.013 23.6 13.5 39 159-200 71-109 (293)
253 3n53_A Response regulator rece 24.0 1.7E+02 0.0058 22.3 6.3 42 158-199 40-84 (140)
254 3m9w_A D-xylose-binding peripl 23.9 3.8E+02 0.013 23.8 11.2 21 316-336 203-223 (313)
255 2gk4_A Conserved hypothetical 23.7 1E+02 0.0034 27.3 5.1 33 62-101 3-50 (232)
256 3r8n_B 30S ribosomal protein S 23.7 36 0.0012 29.9 2.1 32 163-198 148-179 (218)
257 3f9i_A 3-oxoacyl-[acyl-carrier 23.4 99 0.0034 27.0 5.2 17 428-444 215-231 (249)
258 3mm4_A Histidine kinase homolo 23.0 3.3E+02 0.011 22.7 9.6 44 363-407 150-194 (206)
259 3gl9_A Response regulator; bet 23.0 1.2E+02 0.0041 22.6 5.1 17 158-174 40-56 (122)
260 3trf_A Shikimate kinase, SK; a 22.9 68 0.0023 26.5 3.8 26 62-87 4-29 (185)
261 3tem_A Ribosyldihydronicotinam 22.8 1.4E+02 0.0049 26.0 6.0 39 63-104 2-42 (228)
262 3kht_A Response regulator; PSI 22.8 1.4E+02 0.0049 22.9 5.6 18 158-175 45-62 (144)
263 1e2b_A Enzyme IIB-cellobiose; 22.7 1.4E+02 0.0049 22.5 5.3 37 62-100 3-39 (106)
264 2fzv_A Putative arsenical resi 22.7 1.2E+02 0.0042 27.5 5.7 41 60-103 56-98 (279)
265 4dyv_A Short-chain dehydrogena 22.6 1.1E+02 0.0037 27.4 5.4 19 428-446 235-253 (272)
266 4gmf_A Yersiniabactin biosynth 22.4 1E+02 0.0035 29.3 5.3 98 303-407 31-138 (372)
267 4a3s_A 6-phosphofructokinase; 22.3 2.6E+02 0.009 25.9 8.0 43 152-198 81-123 (319)
268 3n74_A 3-ketoacyl-(acyl-carrie 22.3 1.4E+02 0.0048 26.2 6.0 17 428-444 223-239 (261)
269 3fwy_A Light-independent proto 22.1 1.1E+02 0.0037 28.3 5.3 54 46-102 29-84 (314)
270 4fgs_A Probable dehydrogenase 22.1 1.5E+02 0.0051 26.8 6.1 72 268-353 29-112 (273)
271 4e6p_A Probable sorbitol dehyd 22.0 1.3E+02 0.0044 26.5 5.7 17 428-444 225-241 (259)
272 3tpc_A Short chain alcohol deh 22.0 1.1E+02 0.0038 26.9 5.3 16 428-443 223-238 (257)
273 3rd5_A Mypaa.01249.C; ssgcid, 21.8 1.2E+02 0.0042 27.2 5.6 72 268-353 16-95 (291)
274 4gqa_A NAD binding oxidoreduct 21.8 1.8E+02 0.0062 27.7 7.1 64 303-372 58-128 (412)
275 1ihu_A Arsenical pump-driving 21.5 98 0.0033 31.4 5.3 38 61-101 6-43 (589)
276 3io3_A DEHA2D07832P; chaperone 21.4 1.1E+02 0.0036 28.9 5.2 39 61-102 16-56 (348)
277 3cwq_A Para family chromosome 21.3 1.2E+02 0.0041 25.8 5.2 36 63-102 1-36 (209)
278 3grc_A Sensor protein, kinase; 21.3 1.6E+02 0.0053 22.4 5.6 17 158-174 44-60 (140)
279 3b2n_A Uncharacterized protein 21.2 1.7E+02 0.0059 22.0 5.8 37 159-197 44-83 (133)
280 3u5c_A 40S ribosomal protein S 21.2 93 0.0032 27.9 4.3 32 163-198 116-147 (252)
281 2nwq_A Probable short-chain de 21.2 2.2E+02 0.0076 25.3 7.2 19 427-445 229-247 (272)
282 3tzq_B Short-chain type dehydr 21.1 1.4E+02 0.0049 26.5 5.9 17 428-444 219-235 (271)
283 3gpi_A NAD-dependent epimerase 21.0 90 0.0031 27.9 4.5 31 62-101 3-33 (286)
284 2r85_A PURP protein PF1517; AT 21.0 63 0.0022 29.7 3.5 30 62-101 2-31 (334)
285 2h3h_A Sugar ABC transporter, 20.9 4.4E+02 0.015 23.4 21.3 34 302-335 181-216 (313)
286 1nks_A Adenylate kinase; therm 20.8 1.2E+02 0.004 25.0 4.9 29 63-91 1-29 (194)
287 3cea_A MYO-inositol 2-dehydrog 20.7 4.8E+02 0.017 23.7 10.0 63 302-370 32-101 (346)
288 3zv4_A CIS-2,3-dihydrobiphenyl 20.6 1.5E+02 0.005 26.6 5.8 72 268-353 5-88 (281)
289 2i87_A D-alanine-D-alanine lig 20.4 74 0.0025 30.0 3.9 39 62-103 3-44 (364)
290 3gvc_A Oxidoreductase, probabl 20.4 1.6E+02 0.0056 26.3 6.2 76 267-353 28-112 (277)
291 1lss_A TRK system potassium up 20.2 1.5E+02 0.005 22.8 5.2 31 62-101 4-34 (140)
292 2a9o_A Response regulator; ess 20.1 1.2E+02 0.004 22.3 4.4 16 159-174 40-55 (120)
293 3v5n_A Oxidoreductase; structu 20.1 4.2E+02 0.014 25.2 9.4 67 302-372 63-142 (417)
294 3qvo_A NMRA family protein; st 20.1 1.1E+02 0.0036 26.6 4.6 34 62-101 22-55 (236)
295 4e7p_A Response regulator; DNA 20.0 1.5E+02 0.0051 23.0 5.3 31 56-91 14-44 (150)
No 1
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.6e-37 Score=308.57 Aligned_cols=340 Identities=19% Similarity=0.192 Sum_probs=241.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccc-c-----ccCCCchhhHHHHHHHHhhhHHHHHHhhc
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK-E-----YAGWPLNDMERSYKFMVKHVQLWKVAFHS 134 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~-~-----~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ 134 (462)
|++||+|.++||| ||..++++||++|+++|++ ..++++... + ..++++..++. .++.+
T Consensus 1 M~~~i~i~~GGTg-GHi~palala~~L~~~g~~--V~~vg~~~g~e~~~v~~~g~~~~~i~~-------------~~~~~ 64 (365)
T 3s2u_A 1 MKGNVLIMAGGTG-GHVFPALACAREFQARGYA--VHWLGTPRGIENDLVPKAGLPLHLIQV-------------SGLRG 64 (365)
T ss_dssp --CEEEEECCSSH-HHHHHHHHHHHHHHHTTCE--EEEEECSSSTHHHHTGGGTCCEEECC-------------------
T ss_pred CCCcEEEEcCCCH-HHHHHHHHHHHHHHhCCCE--EEEEECCchHhhchhhhcCCcEEEEEC-------------CCcCC
Confidence 4578999999995 9999999999999999862 234442110 0 01111111110 00000
Q ss_pred -CCcchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-CCcccccCC
Q 012492 135 -TSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-CHPTWFHPR 212 (462)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~~~~~~~~ 212 (462)
.....+...+.. .....++.+++++++||+||+++++.+....++++. .++|+|.+..+... ...+|+.+.
T Consensus 65 ~~~~~~~~~~~~~---~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~----~~iP~vihe~n~~~G~~nr~l~~~ 137 (365)
T 3s2u_A 65 KGLKSLVKAPLEL---LKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARL----NGVPLVIHEQNAVAGTANRSLAPI 137 (365)
T ss_dssp --------CHHHH---HHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHH----TTCCEEEEECSSSCCHHHHHHGGG
T ss_pred CCHHHHHHHHHHH---HHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHH----cCCCEEEEecchhhhhHHHhhccc
Confidence 000111112211 122345667899999999999999887766666665 48999754433211 112466778
Q ss_pred CcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHH
Q 012492 213 VNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGE 292 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~ 292 (462)
++++++..++. ..+..++.++|+|+++++.... +.+++++++++.+|++||+.|...+.+.+.++++
T Consensus 138 a~~v~~~~~~~-------~~~~~k~~~~g~pvr~~~~~~~------~~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~ 204 (365)
T 3s2u_A 138 ARRVCEAFPDT-------FPASDKRLTTGNPVRGELFLDA------HARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALA 204 (365)
T ss_dssp CSEEEESSTTS-------SCC---CEECCCCCCGGGCCCT------TSSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHH
T ss_pred cceeeeccccc-------ccCcCcEEEECCCCchhhccch------hhhcccCCCCcEEEEECCcCCccccchhhHHHHH
Confidence 89888776543 1234678899999998876531 1235677788899999999999988888777766
Q ss_pred hhhcccCCCCCceEEEEccCCH--HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEe
Q 012492 293 SLLDKETGRPIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILN 370 (462)
Q Consensus 293 ~l~~~~~~~~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~ 370 (462)
.+.. ..++++++++|.+. .+.+.+++ ...++.+.+|++||.++|+.||++|+++|++|++|++++|+|+|++
T Consensus 205 ~l~~----~~~~~vi~~~G~~~~~~~~~~~~~--~~~~~~v~~f~~dm~~~l~~aDlvI~raG~~Tv~E~~a~G~P~Ili 278 (365)
T 3s2u_A 205 QVPL----EIRPAIRHQAGRQHAEITAERYRT--VAVEADVAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLV 278 (365)
T ss_dssp TSCT----TTCCEEEEECCTTTHHHHHHHHHH--TTCCCEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEEC
T ss_pred hccc----ccceEEEEecCccccccccceecc--cccccccccchhhhhhhhccceEEEecCCcchHHHHHHhCCCeEEe
Confidence 6653 23567888899874 23444443 3457889999999999999999999999999999999999999999
Q ss_pred cCC---CCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 371 DYI---PGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 371 ~~~---~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
|.+ .++|..|++.+++.|+++++. +++.++++|.+++ +||+.+++|++++++++.++++++|++.|+++++.
T Consensus 279 p~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll-~d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 279 PLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVL-MHPETLRSMADQARSLAKPEATRTVVDACLEVARG 357 (365)
T ss_dssp C-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHH-HCTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC--
T ss_pred ccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHH-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 876 478889999999999999886 4788999999999 79999999999999999999999999999998853
No 2
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=1.5e-31 Score=264.91 Aligned_cols=341 Identities=15% Similarity=0.162 Sum_probs=238.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCC-cchhh
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTS-PKWIH 141 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~-~~~~~ 141 (462)
|||++++.+.| ||..++..|+++|.++|+ +|.+..... +.....++. ...+.......... .....
T Consensus 7 mkIl~~~~~~g-G~~~~~~~la~~L~~~G~---~V~v~~~~~---~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~ 73 (364)
T 1f0k_A 7 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGW---QVRWLGTAD---RMEADLVPK------HGIEIDFIRISGLRGKGIKA 73 (364)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHHHTTTC---EEEEEECTT---STHHHHGGG------GTCEEEECCCCCCTTCCHHH
T ss_pred cEEEEEeCCCc-cchhHHHHHHHHHHHcCC---EEEEEecCC---cchhhhccc------cCCceEEecCCccCcCccHH
Confidence 89999998885 999999999999999875 455442110 000000000 00000000000000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-CCcccccCCCcEEEEcC
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-CHPTWFHPRVNRCYCPS 220 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~~~~~~~~~d~~i~~s 220 (462)
.+...........++.+.+++++||+||+++++.......+++. .++|+|...|+... ....|+.+.+|.+++.+
T Consensus 74 ~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~----~~~p~v~~~~~~~~~~~~~~~~~~~d~v~~~~ 149 (364)
T 1f0k_A 74 LIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWS----LGIPVVLHEQNGIAGLTNKWLAKIATKVMQAF 149 (364)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHH----TTCCEEEEECSSSCCHHHHHHTTTCSEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHH----cCCCEEEEecCCCCcHHHHHHHHhCCEEEecC
Confidence 00000111234556778899999999999987644433344444 47999877776421 12346678899999987
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCC
Q 012492 221 KEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETG 300 (462)
Q Consensus 221 ~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~ 300 (462)
+.. ++ ++.++||+++..++... ..+++++++++.+++++++|+.+.++..+.+.++++.+.+
T Consensus 150 ~~~--------~~--~~~~i~n~v~~~~~~~~----~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---- 211 (364)
T 1f0k_A 150 PGA--------FP--NAEVVGNPVRTDVLALP----LPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---- 211 (364)
T ss_dssp TTS--------SS--SCEECCCCCCHHHHTSC----CHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG----
T ss_pred hhh--------cC--CceEeCCccchhhcccc----hhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC----
Confidence 653 33 57899999998766431 1245677877778888889888877666666455555532
Q ss_pred CCCceEEEEccCCH--HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCC--Cc
Q 012492 301 RPIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIP--GQ 376 (462)
Q Consensus 301 ~~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~--~~ 376 (462)
++++++++|.+. ++.+.++++++ .+|.|.|+++++.++|+.||++|++||+++++|||++|+|+|+++.++ ++
T Consensus 212 --~~~~l~i~G~~~~~~l~~~~~~~~~-~~v~~~g~~~~~~~~~~~ad~~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~ 288 (364)
T 1f0k_A 212 --SVTIWHQSGKGSQQSVEQAYAEAGQ-PQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQ 288 (364)
T ss_dssp --GEEEEEECCTTCHHHHHHHHHHTTC-TTSEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECCCCCTTCH
T ss_pred --CcEEEEEcCCchHHHHHHHHhhcCC-CceEEecchhhHHHHHHhCCEEEECCchHHHHHHHHhCCCEEEeeCCCCchh
Confidence 467677788775 34555555555 479999999999999999999999999999999999999999999864 56
Q ss_pred cccchHHHHHCCceeeeCC----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 377 EKGNVPYVVDNGAGVFTRS----PKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 377 ~~~n~~~l~~~G~g~~~~~----~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
|..|+..+++.|.|++++. +++++++|.++ |++.+++|+++++++++.++++++++.+++++++.
T Consensus 289 q~~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 357 (364)
T 1f0k_A 289 QYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW---SRETLLTMAERARAASIPDATERVANEVSRVARAL 357 (364)
T ss_dssp HHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC---CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCcEEEeccccCCHHHHHHHHHhc---CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 6778999999999988863 78889988887 89999999999999999999999999999998754
No 3
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.97 E-value=4.4e-29 Score=248.96 Aligned_cols=349 Identities=14% Similarity=0.111 Sum_probs=228.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHh-hcCCc-chh
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAF-HSTSP-KWI 140 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~-~~~~~-~~~ 140 (462)
|||+++++.. .+...+..|+++|+++|+..+++.+. +.........+.. ++..+ ..... +..
T Consensus 1 mkIl~v~~~~--~~~~~~~~l~~~L~~~g~~~~~v~~~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 64 (384)
T 1vgv_A 1 MKVLTVFGTR--PEAIKMAPLVHALAKDPFFEAKVCVT-------AQHREMLDQVLKL-------FSIVPDYDLNIMQPG 64 (384)
T ss_dssp CEEEEEECSH--HHHHHHHHHHHHHHHSTTCEEEEEEC-------CSSGGGGHHHHHH-------HTCCCSEECCCCSTT
T ss_pred CeEEEEeccc--HHHHHHHHHHHHHHhCCCCceEEEEc-------CCCHHHHHHHHHH-------cCCCCCcceecCCCC
Confidence 7999987664 33445578999999987423444332 1111111111111 11101 01100 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCc-ccchHHHHHHHHcCCCCCCeEEEEecCCCCCC-----c-----ccc
Q 012492 141 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHP-LMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH-----P-----TWF 209 (462)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~-~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~-----~-----~~~ 209 (462)
..... .......++.+++++++||+||++++ ........+++. .++|+|.+.++..... + .+.
T Consensus 65 ~~~~~--~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~----~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~ 138 (384)
T 1vgv_A 65 QGLTE--ITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFY----QRIPVGHVEAGLRTGDLYSPWPEEANRTLT 138 (384)
T ss_dssp SCHHH--HHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHT----TTCCEEEESCCCCCSCTTSSTTHHHHHHHH
T ss_pred ccHHH--HHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH----HCCCEEEEecccccccccCCCchHhhHHHH
Confidence 01111 01233467788999999999999875 322222233332 4899988777653111 0 112
Q ss_pred cCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccC-------ChHHHHHHcC-CCCCCcEEEEEeCCCCC-
Q 012492 210 HPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVI-------SKDNLRLELQ-MDPILPAVLLMGGGEGM- 280 (462)
Q Consensus 210 ~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~-------~~~~~r~~l~-l~~~~~~iLv~gG~~~~- 280 (462)
.+.+|.++++|+..++.+.+.|++++++.++||++.+.+..... .+.+++++++ ++++.+++++++|+...
T Consensus 139 ~~~~d~ii~~s~~~~~~l~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~ 218 (384)
T 1vgv_A 139 GHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESF 218 (384)
T ss_dssp HTTCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSC
T ss_pred HhhccEEEcCcHHHHHHHHHcCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCcccc
Confidence 45689999999999999988899888999999996443322100 0125677788 76666677777776543
Q ss_pred -ccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhc-cCCCCeEEeccc--hhHHHHHHhcchheecCChhh
Q 012492 281 -GPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSE-EWKIPVKVRGFE--TQMEKWMGACDCIITKAGPGT 356 (462)
Q Consensus 281 -~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~-~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t 356 (462)
++...+++++ ..+.+. .|++++++++|.+..+.+.++++ +..++|.|.|+. +++.++|+.||++|++||+ +
T Consensus 219 ~kg~~~li~a~-~~l~~~---~~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~Sg~-~ 293 (384)
T 1vgv_A 219 GRGFEEICHAL-ADIATT---HQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGG-I 293 (384)
T ss_dssp CHHHHHHHHHH-HHHHHH---CTTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESSST-G
T ss_pred chHHHHHHHHH-HHHHhh---CCCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHhCcEEEECCcc-h
Confidence 3445555544 444332 46788777677664444555443 334689996543 6899999999999999965 5
Q ss_pred HHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHH
Q 012492 357 IAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVK 435 (462)
Q Consensus 357 ~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~ 435 (462)
++|||++|+|+|+++..++ ...+++.|.|++++ |+++++++|.+++ +|++.+++|+++++++...++++++++
T Consensus 294 ~lEA~a~G~PvI~~~~~~~-----~~e~v~~g~g~lv~~d~~~la~~i~~ll-~d~~~~~~~~~~~~~~~~~~~~~~i~~ 367 (384)
T 1vgv_A 294 QEEAPSLGKPVLVMRDTTE-----RPEAVTAGTVRLVGTDKQRIVEEVTRLL-KDENEYQAMSRAHNPYGDGQACSRILE 367 (384)
T ss_dssp GGTGGGGTCCEEEESSCCS-----CHHHHHHTSEEEECSSHHHHHHHHHHHH-HCHHHHHHHHSSCCTTCCSCHHHHHHH
T ss_pred HHHHHHcCCCEEEccCCCC-----cchhhhCCceEEeCCCHHHHHHHHHHHH-hChHHHhhhhhccCCCcCCCHHHHHHH
Confidence 8999999999999986433 23456667888884 8999999999999 699999999999999988999999999
Q ss_pred HHHHHHhcc
Q 012492 436 DIHDLAAQR 444 (462)
Q Consensus 436 ~i~~l~~~~ 444 (462)
.+++++++.
T Consensus 368 ~~~~~~~~~ 376 (384)
T 1vgv_A 368 ALKNNRISL 376 (384)
T ss_dssp HHHHTCCCC
T ss_pred HHHHHHHhh
Confidence 999887665
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.97 E-value=1e-28 Score=250.73 Aligned_cols=268 Identities=15% Similarity=0.116 Sum_probs=195.6
Q ss_pred HHhh-CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc------------------ccccCCCcEEEEcC
Q 012492 160 LMEY-KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP------------------TWFHPRVNRCYCPS 220 (462)
Q Consensus 160 l~~~-kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~------------------~~~~~~~d~~i~~s 220 (462)
+++. +||+|+++..........+++. .++|+|...|+...... .+..+.+|.++++|
T Consensus 117 ~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 192 (438)
T 3c48_A 117 RREKVTYDLIHSHYWLSGQVGWLLRDL----WRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLAVNT 192 (438)
T ss_dssp HHHTCCCSEEEEEHHHHHHHHHHHHHH----HTCCEEEECSSCHHHHSCC----CCHHHHHHHHHHHHHHHHCSEEEESS
T ss_pred HhccCCCCEEEeCCccHHHHHHHHHHH----cCCCEEEEecCCcccccccccccCCcchHHHHHHHHHHHhcCCEEEEcC
Confidence 5555 4999999865433332233443 37899988887531000 12235689999999
Q ss_pred HHHHHHHHH-cCCCCCcEEEcCCCCChhhhcccC--ChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcc
Q 012492 221 KEVAKRASY-FGLEVSQIRVFGLPIRPSFVRAVI--SKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDK 297 (462)
Q Consensus 221 ~~~~~~l~~-~gi~~~~i~v~g~pv~~~~~~~~~--~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~ 297 (462)
+..++.+.+ .|++.+++.+++|+++...+.+.. .++.++++++++++.++++++|+....++...+++++ +.+.+.
T Consensus 193 ~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~-~~l~~~ 271 (438)
T 3c48_A 193 QEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAV-AALFDR 271 (438)
T ss_dssp HHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTTCCSSSEEEEEESCBSGGGCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcCCCCCCcEEEEEeeecccCCHHHHHHHH-HHHHhh
Confidence 999999877 688888999999999876655321 1234888999987777666665544455566666554 455442
Q ss_pred cCCCC--CceEEEEccC----CH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHHH
Q 012492 298 ETGRP--IGQLIIICGR----NR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEALI 362 (462)
Q Consensus 298 ~~~~~--~~~~lvv~G~----~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla 362 (462)
.| +++++++ |. +. .+.+.++++++.++|.|.|++ +++.++|+.||++|.+|. |++++|||+
T Consensus 272 ---~p~~~~~l~i~-G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama 347 (438)
T 3c48_A 272 ---DPDRNLRVIIC-GGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQA 347 (438)
T ss_dssp ---CTTCSEEEEEE-CCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHH
T ss_pred ---CCCcceEEEEE-eCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHH
Confidence 34 5666554 54 22 366777778888899999999 799999999999999873 889999999
Q ss_pred hCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 012492 363 RGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDL 440 (462)
Q Consensus 363 ~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l 440 (462)
+|+|+|+++.++ ..+.+.+.+.|++++ |+++++++|.+++ +|++.+++|++++++.+..++++.+++.+.++
T Consensus 348 ~G~PvI~~~~~~-----~~e~i~~~~~g~~~~~~d~~~la~~i~~l~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 421 (438)
T 3c48_A 348 SGTPVIAARVGG-----LPIAVAEGETGLLVDGHSPHAWADALATLL-DDDETRIRMGEDAVEHARTFSWAATAAQLSSL 421 (438)
T ss_dssp TTCCEEEESCTT-----HHHHSCBTTTEEEESSCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEecCCCC-----hhHHhhCCCcEEECCCCCHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998642 222333444677775 7999999999999 69999999999999998779999999988877
Q ss_pred Hh
Q 012492 441 AA 442 (462)
Q Consensus 441 ~~ 442 (462)
++
T Consensus 422 ~~ 423 (438)
T 3c48_A 422 YN 423 (438)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 5
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.96 E-value=9.8e-28 Score=238.32 Aligned_cols=274 Identities=15% Similarity=0.123 Sum_probs=193.7
Q ss_pred HHHHHHHHHHhhCCCEEEECCcccchHH-HHHHHHcCCCCCCeEEEEecCCCCCC-----ccc-----ccCCCcEEEEcC
Q 012492 152 YAKEVEAGLMEYKPDIIISVHPLMQHIP-LWVLKWQGLQKKVIFVTVITDLNTCH-----PTW-----FHPRVNRCYCPS 220 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~~~~~~~-~~~~~~~~~~~~iP~v~~~~d~~~~~-----~~~-----~~~~~d~~i~~s 220 (462)
...++.+++++++||+||++++...... ..+++. .++|+|.+.++..... ..+ +.+.+|.++++|
T Consensus 83 ~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~----~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 158 (375)
T 3beo_A 83 GLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFY----NQIPVGHVEAGLRTWDKYSPYPEEMNRQLTGVMADLHFSPT 158 (375)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHH----TTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESS
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH----HCCCEEEEecccccccccCCChhHhhhhHHhhhhheeeCCC
Confidence 4556788899999999999765332222 233443 4899987666432110 011 123489999999
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCC-CChhhhcccC-ChHHHHHHcCCCCCCcEEEEEeCCCCC--ccHHHHHHHHHHhhhc
Q 012492 221 KEVAKRASYFGLEVSQIRVFGLP-IRPSFVRAVI-SKDNLRLELQMDPILPAVLLMGGGEGM--GPVKETAMALGESLLD 296 (462)
Q Consensus 221 ~~~~~~l~~~gi~~~~i~v~g~p-v~~~~~~~~~-~~~~~r~~l~l~~~~~~iLv~gG~~~~--~~~~~~l~~l~~~l~~ 296 (462)
+..++.+.+.|++++++.++||+ ++...+.... .+..+++++ + +.+++++++|+... ++...+++++ +.+.+
T Consensus 159 ~~~~~~~~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~--~-~~~~vl~~~gr~~~~~K~~~~li~a~-~~l~~ 234 (375)
T 3beo_A 159 AKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLEKL--G-NNRLVLMTAHRRENLGEPMRNMFRAI-KRLVD 234 (375)
T ss_dssp HHHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT--T-TSEEEEEECCCGGGTTHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHcCCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc--c-CCCeEEEEecccccchhHHHHHHHHH-HHHHh
Confidence 99999998889988899999999 6554433211 234455555 2 34566777776653 4455555544 44543
Q ss_pred ccCCCCCceEEEEccCCHHHHHHHhhc-cCCCCeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 297 KETGRPIGQLIIICGRNRTLASTLQSE-EWKIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 297 ~~~~~~~~~~lvv~G~~~~l~~~~~~~-~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
. .|++++++..|...++.+.++++ +..++|.|.|+. .++..+|+.||++|++|| ++++|||++|+|+|+++..
T Consensus 235 ~---~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~sg-~~~lEA~a~G~Pvi~~~~~ 310 (375)
T 3beo_A 235 K---HEDVQVVYPVHMNPVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDSG-GVQEEAPSLGVPVLVLRDT 310 (375)
T ss_dssp H---CTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECCH-HHHHHHHHHTCCEEECSSC
T ss_pred h---CCCeEEEEeCCCCHHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECCC-ChHHHHHhcCCCEEEecCC
Confidence 2 46777665445444455555543 334689997765 489999999999999994 5699999999999999653
Q ss_pred CCccccchHHHHHCCceeee-CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 374 PGQEKGNVPYVVDNGAGVFT-RSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 374 ~~~~~~n~~~l~~~G~g~~~-~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
++. ..+++.|.|+++ .|+++++++|.+++ +|++.+++|+++++++.+.++++++++.+++++++
T Consensus 311 ~~~-----~e~v~~g~g~~v~~d~~~la~~i~~ll-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 375 (375)
T 3beo_A 311 TER-----PEGIEAGTLKLAGTDEETIFSLADELL-SDKEAHDKMSKASNPYGDGRASERIVEAILKHFNK 375 (375)
T ss_dssp CSC-----HHHHHTTSEEECCSCHHHHHHHHHHHH-HCHHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTTC
T ss_pred CCC-----ceeecCCceEEcCCCHHHHHHHHHHHH-hChHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhhC
Confidence 332 345677888887 58999999999999 79999999999999998899999999999998753
No 6
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.96 E-value=8.5e-28 Score=240.95 Aligned_cols=273 Identities=13% Similarity=0.135 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHhhCCCEEEECCcccchHH-HHHHHHcCCCCCCeEEEEecCCCC--CCccc--------ccCCCcEEEEc
Q 012492 151 YYAKEVEAGLMEYKPDIIISVHPLMQHIP-LWVLKWQGLQKKVIFVTVITDLNT--CHPTW--------FHPRVNRCYCP 219 (462)
Q Consensus 151 ~~~~~l~~~l~~~kPDvVi~~~~~~~~~~-~~~~~~~~~~~~iP~v~~~~d~~~--~~~~~--------~~~~~d~~i~~ 219 (462)
....++.+++++++||+|++++......+ ..+++. .+||++.+...... .+..| +.+.+|.++++
T Consensus 98 ~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~----~~IPv~h~~ag~rs~~~~~~~~~~~~r~~~~~~a~~~~~~ 173 (396)
T 3dzc_A 98 KILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYY----QQIPVGHVEAGLRTGNIYSPWPEEGNRKLTAALTQYHFAP 173 (396)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHT----TTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHH----hCCCEEEEECCccccccccCCcHHHHHHHHHHhcCEEECC
Confidence 45567889999999999999887655333 334443 48998876543211 11111 24577999999
Q ss_pred CHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCC-------hHHHHHHcC-CCCCCcEEEEEeCCCCC--ccHHHHHHH
Q 012492 220 SKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVIS-------KDNLRLELQ-MDPILPAVLLMGGGEGM--GPVKETAMA 289 (462)
Q Consensus 220 s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~-------~~~~r~~l~-l~~~~~~iLv~gG~~~~--~~~~~~l~~ 289 (462)
++..++.+.+.|++++++.++|||+.+.+...... +++++++++ ++++.+++|++++..+. +.+..++++
T Consensus 174 se~~~~~l~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll~A 253 (396)
T 3dzc_A 174 TDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERICQA 253 (396)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHHHHHH
Confidence 99999999999999899999999876544332111 256788899 56677888888855432 234444444
Q ss_pred HHHhhhcccCCCCCceEEEEccCCHHHHHHHhhc-cCCCCeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCC
Q 012492 290 LGESLLDKETGRPIGQLIIICGRNRTLASTLQSE-EWKIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLP 366 (462)
Q Consensus 290 l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~-~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~P 366 (462)
+ +.+.+. +|++++++.+|.+..+++.++++ +...+|.+.++. .++..+|+.||++|++||+. ..||+++|+|
T Consensus 254 ~-~~l~~~---~~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~SGg~-~~EA~a~G~P 328 (396)
T 3dzc_A 254 L-ITTAEQ---HPECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAHIILTDSGGI-QEEAPSLGKP 328 (396)
T ss_dssp H-HHHHHH---CTTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCSEEEESCSGG-GTTGGGGTCC
T ss_pred H-HHHHHh---CCCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcCEEEECCccH-HHHHHHcCCC
Confidence 4 445432 46788877788776566666653 445789998776 58999999999999999844 4899999999
Q ss_pred EEEecCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 012492 367 IILNDYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIH 438 (462)
Q Consensus 367 vI~~~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~ 438 (462)
+|+++..++.+ .+++.|.++++. +++++++++.+++ +|++.+++|++++..+.+..++++|++.|+
T Consensus 329 vV~~~~~~~~~-----e~v~~G~~~lv~~d~~~l~~ai~~ll-~d~~~~~~m~~~~~~~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 329 VLVMRETTERP-----EAVAAGTVKLVGTNQQQICDALSLLL-TDPQAYQAMSQAHNPYGDGKACQRIADILA 395 (396)
T ss_dssp EEECCSSCSCH-----HHHHHTSEEECTTCHHHHHHHHHHHH-HCHHHHHHHHTSCCTTCCSCHHHHHHHHHH
T ss_pred EEEccCCCcch-----HHHHcCceEEcCCCHHHHHHHHHHHH-cCHHHHHHHhhccCCCcCChHHHHHHHHHh
Confidence 99985433322 356778888886 6999999999999 799999999999999999999999999875
No 7
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.96 E-value=6.5e-28 Score=240.04 Aligned_cols=272 Identities=14% Similarity=0.109 Sum_probs=189.8
Q ss_pred HHHHHHHHHhhCCCEEEECCcccchHH-HHHHHHcCCCCCCeEEEEecCCCCCC----------cccccCCCcEEEEcCH
Q 012492 153 AKEVEAGLMEYKPDIIISVHPLMQHIP-LWVLKWQGLQKKVIFVTVITDLNTCH----------PTWFHPRVNRCYCPSK 221 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~~~~~~~-~~~~~~~~~~~~iP~v~~~~d~~~~~----------~~~~~~~~d~~i~~s~ 221 (462)
..++.+++++++||+||++++.....+ ..+++. .++|++++.++..... ..++.+.+|.++++|+
T Consensus 80 ~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~----~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 155 (376)
T 1v4v_A 80 LPQAARALKEMGADYVLVHGDTLTTFAVAWAAFL----EGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTP 155 (376)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHH----TTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSH
T ss_pred HHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHH----hCCCEEEEeCCCccccccCCCchHHHHHHHHHHhceeeCCCH
Confidence 456778899999999999875433322 334444 4899886655432110 1123345789999999
Q ss_pred HHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCC-CccHHHHHHHHHHhhhcccCC
Q 012492 222 EVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEG-MGPVKETAMALGESLLDKETG 300 (462)
Q Consensus 222 ~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~-~~~~~~~l~~l~~~l~~~~~~ 300 (462)
..++.+.+.|++++++.++||++.+.+... ..+..+++++ + +.+++++++|+.. .++...+++++ +.+.+.
T Consensus 156 ~~~~~l~~~g~~~~ki~vi~n~~~d~~~~~-~~~~~~~~~~--~-~~~~vl~~~gr~~~~k~~~~ll~a~-~~l~~~--- 227 (376)
T 1v4v_A 156 LAKANLLKEGKREEGILVTGQTGVDAVLLA-AKLGRLPEGL--P-EGPYVTVTMHRRENWPLLSDLAQAL-KRVAEA--- 227 (376)
T ss_dssp HHHHHHHTTTCCGGGEEECCCHHHHHHHHH-HHHCCCCTTC--C-SSCEEEECCCCGGGGGGHHHHHHHH-HHHHHH---
T ss_pred HHHHHHHHcCCCcceEEEECCchHHHHhhh-hhhhHHHHhc--C-CCCEEEEEeCcccchHHHHHHHHHH-HHHHhh---
Confidence 999999888998889999999864433221 0111122223 2 3456777777553 23455555544 444432
Q ss_pred CCCceEEEEccCCHHHHHHHhhc-cCCCCeEEe---ccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCc
Q 012492 301 RPIGQLIIICGRNRTLASTLQSE-EWKIPVKVR---GFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQ 376 (462)
Q Consensus 301 ~~~~~~lvv~G~~~~l~~~~~~~-~~~~~V~~~---g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~ 376 (462)
.|++++++++|++..+++.++++ +..++|.|. |+. ++.++|+.||++|++||+. ++|||++|+|+|+++..++.
T Consensus 228 ~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~-~~~~~~~~ad~~v~~S~g~-~lEA~a~G~PvI~~~~~~~~ 305 (376)
T 1v4v_A 228 FPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYG-SMAALMRASLLLVTDSGGL-QEEGAALGVPVVVLRNVTER 305 (376)
T ss_dssp CTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHH-HHHHHHHTEEEEEESCHHH-HHHHHHTTCCEEECSSSCSC
T ss_pred CCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHH-HHHHHHHhCcEEEECCcCH-HHHHHHcCCCEEeccCCCcc
Confidence 46777776678765444444443 224689999 555 8999999999999999654 78999999999998754443
Q ss_pred cccchHHHHHCCceeee-CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 377 EKGNVPYVVDNGAGVFT-RSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 377 ~~~n~~~l~~~G~g~~~-~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
+. +++.|.|+++ .|++++++++.+++ +|++.+++|+++++++....+++++++.+.++++-.
T Consensus 306 ~~-----~~~~g~g~lv~~d~~~la~~i~~ll-~d~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 368 (376)
T 1v4v_A 306 PE-----GLKAGILKLAGTDPEGVYRVVKGLL-ENPEELSRMRKAKNPYGDGKAGLMVARGVAWRLGLG 368 (376)
T ss_dssp HH-----HHHHTSEEECCSCHHHHHHHHHHHH-TCHHHHHHHHHSCCSSCCSCHHHHHHHHHHHHTTSS
T ss_pred hh-----hhcCCceEECCCCHHHHHHHHHHHH-hChHhhhhhcccCCCCCCChHHHHHHHHHHHHhccc
Confidence 32 4667888888 68999999999999 799999999988777877889999999999988633
No 8
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.96 E-value=2.2e-27 Score=237.76 Aligned_cols=349 Identities=11% Similarity=0.088 Sum_probs=232.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecccccc-CCCchhhHHHHHHHHhhhHHHHHHhhcCCcchh
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYA-GWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 140 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~-~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 140 (462)
..+|.....+..||....+..|+++|.++|+ +|.+........ ......+. + ...+... +... ...
T Consensus 15 ~~~~~~~~~p~~GG~~~~~~~la~~L~~~G~---~V~v~~~~~~~~~~~~~~~i~--~----~~~~~~~--~~~~--~~~ 81 (394)
T 2jjm_A 15 KLKIGITCYPSVGGSGVVGTELGKQLAERGH---EIHFITSGLPFRLNKVYPNIY--F----HEVTVNQ--YSVF--QYP 81 (394)
T ss_dssp CCEEEEECCC--CHHHHHHHHHHHHHHHTTC---EEEEECSSCC----CCCTTEE--E----ECCCCC------C--CSC
T ss_pred eeeeehhcCCCCCCHHHHHHHHHHHHHhCCC---EEEEEeCCCCCcccccCCceE--E----Eeccccc--cccc--ccc
Confidence 3466666544335999999999999999985 555442211000 00000000 0 0000000 0000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC----CCc------cccc
Q 012492 141 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT----CHP------TWFH 210 (462)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~----~~~------~~~~ 210 (462)
.......+++.+++++.+||+|+++++........+++... ..++|+|...|+... ..+ .+..
T Consensus 82 ------~~~~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~ 154 (394)
T 2jjm_A 82 ------PYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMI-GERIKIVTTLHGTDITVLGSDPSLNNLIRFGI 154 (394)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHT-TTCSEEEEECCHHHHHTTTTCTTTHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhh-cCCCCEEEEEecCcccccCCCHHHHHHHHHHH
Confidence 01123445677889999999999987654433233333321 026999988876310 001 1223
Q ss_pred CCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHH
Q 012492 211 PRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMAL 290 (462)
Q Consensus 211 ~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l 290 (462)
+.+|.++++|+..++.+.+.+..++++.+++|+++...+.+ ..+..++++++++++.++++++|+....++...+++++
T Consensus 155 ~~ad~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~ 233 (394)
T 2jjm_A 155 EQSDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFK-RDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAF 233 (394)
T ss_dssp HHSSEEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCC-CCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHH
T ss_pred hhCCEEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCC-cchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHH
Confidence 56899999999999998876544678999999998876654 34567888899977777777766555556666666554
Q ss_pred HHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC----hhhHHHHHHh
Q 012492 291 GESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG----PGTIAEALIR 363 (462)
Q Consensus 291 ~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~ 363 (462)
+.+.+ .+++++++ +|.+. ++.+.++++++.++|.|.|+.+++.++|+.||++|.+|. |++++|||++
T Consensus 234 -~~l~~----~~~~~l~i-~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~ 307 (394)
T 2jjm_A 234 -AKIVT----EVDAKLLL-VGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMAC 307 (394)
T ss_dssp -HHHHH----SSCCEEEE-ECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHT
T ss_pred -HHHHh----hCCCEEEE-ECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccCCCchHHHHHHhc
Confidence 45544 13566554 55543 356667777778899999999999999999999998763 8999999999
Q ss_pred CCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHH
Q 012492 364 GLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLA-QPEAVVDIVKDIHDL 440 (462)
Q Consensus 364 G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~l 440 (462)
|+|+|+++.++..+ .+.+.+.|++++ |+++++++|.+++ +|++.+++|++++++.+ +.++++++++.++++
T Consensus 308 G~PvI~~~~~~~~e-----~v~~~~~g~~~~~~d~~~la~~i~~l~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 381 (394)
T 2jjm_A 308 GVPCIGTRVGGIPE-----VIQHGDTGYLCEVGDTTGVADQAIQLL-KDEELHRNMGERARESVYEQFRSEKIVSQYETI 381 (394)
T ss_dssp TCCEEEECCTTSTT-----TCCBTTTEEEECTTCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCCEEEecCCChHH-----HhhcCCceEEeCCCCHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999998753222 233345677776 8999999999999 69999999999999998 789999999999998
Q ss_pred Hhc
Q 012492 441 AAQ 443 (462)
Q Consensus 441 ~~~ 443 (462)
+++
T Consensus 382 ~~~ 384 (394)
T 2jjm_A 382 YYD 384 (394)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 9
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.96 E-value=7.6e-27 Score=234.39 Aligned_cols=276 Identities=12% Similarity=0.109 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHhhCCCEEEECCcccchHH-HHHHHHcCCCCCCeEEEEecCCCC--C---Cc-----ccccCCCcEEEEc
Q 012492 151 YYAKEVEAGLMEYKPDIIISVHPLMQHIP-LWVLKWQGLQKKVIFVTVITDLNT--C---HP-----TWFHPRVNRCYCP 219 (462)
Q Consensus 151 ~~~~~l~~~l~~~kPDvVi~~~~~~~~~~-~~~~~~~~~~~~iP~v~~~~d~~~--~---~~-----~~~~~~~d~~i~~ 219 (462)
....++.+++++++||+|++++......+ ..+++. .+||++.+...... . .+ .++.+.+|.++++
T Consensus 101 ~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~----~~IPv~h~~aglrs~~~~~~~p~~~~r~~~~~~a~~~~~~ 176 (403)
T 3ot5_A 101 RVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFY----QQKMLGHVEAGLRTWNKYSPFPEEMNRQLTGVMADIHFSP 176 (403)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHH----TTCEEEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHH----hCCCEEEEECCccccccccCCcHHHHHHHHHHhcCEEECC
Confidence 44567889999999999999886544332 334444 48998876543211 0 11 1234457899999
Q ss_pred CHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccC--ChHHHHHHcCCCCCCcEEEEEeCCCCC--ccHHHHHHHHHHhhh
Q 012492 220 SKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVI--SKDNLRLELQMDPILPAVLLMGGGEGM--GPVKETAMALGESLL 295 (462)
Q Consensus 220 s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~--~~~~~r~~l~l~~~~~~iLv~gG~~~~--~~~~~~l~~l~~~l~ 295 (462)
++..++.+.+.|+++++|.++|||+.+.+..... .+...++++ ++.+++|+++|+... +....++.++ +.+.
T Consensus 177 se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l---~~~~~vlv~~~r~~~~~~~l~~ll~a~-~~l~ 252 (403)
T 3ot5_A 177 TKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENL---GDNRLILMTAHRRENLGEPMQGMFEAV-REIV 252 (403)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC---TTCEEEEECCCCHHHHTTHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhhhhcchHHHHhc---cCCCEEEEEeCcccccCcHHHHHHHHH-HHHH
Confidence 9999999999999989999999987554432111 123455555 455677777765321 2344445444 3443
Q ss_pred cccCCCCCceEEEEccCCHHHHHHHhh-ccCCCCeEEeccch--hHHHHHHhcchheecCChhhHHHHHHhCCCEEEecC
Q 012492 296 DKETGRPIGQLIIICGRNRTLASTLQS-EEWKIPVKVRGFET--QMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 296 ~~~~~~~~~~~lvv~G~~~~l~~~~~~-~~~~~~V~~~g~~~--~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
+. .|++++++.+|++..+++.+++ ++...+|.++++.. ++..+|+.||++|++||+.+ +||+++|+|+|+++.
T Consensus 253 ~~---~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~~SGg~~-~EA~a~g~PvV~~~~ 328 (403)
T 3ot5_A 253 ES---REDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDSGGVQ-EEAPGMGVPVLVLRD 328 (403)
T ss_dssp HH---CTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEEEEECCHHHH-HHGGGTTCCEEECCS
T ss_pred Hh---CCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCEEEECCccHH-HHHHHhCCCEEEecC
Confidence 31 4678888777877655556655 34457899999874 89999999999999997665 899999999999965
Q ss_pred CCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 373 IPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 373 ~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
.+++++ +++.|.++++. +++++++++.+++ +|++.+++|++++..+.+..++++|++.|.+++...
T Consensus 329 ~~~~~e-----~v~~g~~~lv~~d~~~l~~ai~~ll-~~~~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l~~~ 395 (403)
T 3ot5_A 329 TTERPE-----GIEAGTLKLIGTNKENLIKEALDLL-DNKESHDKMAQAANPYGDGFAANRILAAIKSHFEET 395 (403)
T ss_dssp SCSCHH-----HHHHTSEEECCSCHHHHHHHHHHHH-HCHHHHHHHHHSCCTTCCSCHHHHHHHHHHHHHTCC
T ss_pred CCcchh-----heeCCcEEEcCCCHHHHHHHHHHHH-cCHHHHHHHHhhcCcccCCcHHHHHHHHHHHHhCCC
Confidence 444433 46778888886 8999999999999 799999999999889999999999999999988753
No 10
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.95 E-value=2.2e-26 Score=232.06 Aligned_cols=343 Identities=15% Similarity=0.116 Sum_probs=226.0
Q ss_pred CCCeEEEEecC-CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcC-Ccc
Q 012492 61 RTKNVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHST-SPK 138 (462)
Q Consensus 61 ~~~kIli~~~~-~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~-~~~ 138 (462)
++|||++++.. .+||+...+..|+++|.++|+ +|.+.... + . .. .+.. .. . ....+... ...
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~---~v~v~~~~----~-~-~~---~~~~-~~--~-~~~~~~~~~~~~ 102 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGI---EARWFVIE----G-P-TE---FFNV-TK--T-FHNALQGNESLK 102 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTC---EEEEEECC----C-C-HH---HHHH-HH--H-HHHHHTTCCSCC
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCC---eEEEEEcc----C-C-cc---hhhh-hc--c-cceeeccccccc
Confidence 56899999865 346999999999999999875 44433211 1 0 11 0110 00 0 00001110 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc-------ccccC
Q 012492 139 WIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP-------TWFHP 211 (462)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~-------~~~~~ 211 (462)
........ .....+.+.+.+++.+||+||++++...... .... .++|+|...|+...... .++..
T Consensus 103 ~~~~~~~~--~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~----~~~~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~~ 174 (416)
T 2x6q_A 103 LTEEMKEL--YLNVNRENSKFIDLSSFDYVLVHDPQPAALI----EFYE--KKSPWLWRCHIDLSSPNREFWEFLRRFVE 174 (416)
T ss_dssp CCHHHHHH--HHHHHHHHHHSSCGGGSSEEEEESSTTGGGG----GGSC--CCSCEEEECCSCCSSCCHHHHHHHHHHHT
T ss_pred ccHHHHHH--HHHHHHHHHHHHhhcCCCEEEEeccchhhHH----HHHH--hcCCEEEEEccccCCccHHHHHHHHHHHH
Confidence 00000111 1123345667788899999999887654331 1111 24899887776432111 11234
Q ss_pred CCcEEE-EcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcc-c---CChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHH
Q 012492 212 RVNRCY-CPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRA-V---ISKDNLRLELQMDPILPAVLLMGGGEGMGPVKET 286 (462)
Q Consensus 212 ~~d~~i-~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~-~---~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~ 286 (462)
.+|.++ +.++... .+++..++.+++|+++...+.. . ..+..++++++++++.++++++|+....++...+
T Consensus 175 ~~~~~i~~~s~~~~-----~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~l 249 (416)
T 2x6q_A 175 KYDRYIFHLPEYVQ-----PELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDV 249 (416)
T ss_dssp TSSEEEESSGGGSC-----TTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHH
T ss_pred hCCEEEEechHHHH-----hhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHH
Confidence 567766 4444332 2456678999999998653321 1 1345678899998888877777766666677666
Q ss_pred HHHHHHhhhcccCCCCCceEEEEccCCH--------HHHHHHhhccCCCCeEEeccch-----hHHHHHHhcchheecC-
Q 012492 287 AMALGESLLDKETGRPIGQLIIICGRNR--------TLASTLQSEEWKIPVKVRGFET-----QMEKWMGACDCIITKA- 352 (462)
Q Consensus 287 l~~l~~~l~~~~~~~~~~~~lvv~G~~~--------~l~~~~~~~~~~~~V~~~g~~~-----~~~~l~~~aD~vV~~s- 352 (462)
++++ +.+.+. .|+++++++ |.+. .+.+..++++..++|+|.|+++ ++.++|+.||++|.+|
T Consensus 250 i~a~-~~l~~~---~~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~ 324 (416)
T 2x6q_A 250 IEIY-RKVKEK---IPGVQLLLV-GVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSI 324 (416)
T ss_dssp HHHH-HHHHHH---CTTCEEEEE-ECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCS
T ss_pred HHHH-HHHHHh---CCCeEEEEE-ecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCC
Confidence 6655 445432 467776554 5541 2445556667788999999875 8999999999999988
Q ss_pred ---ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-Cc
Q 012492 353 ---GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQ-PE 428 (462)
Q Consensus 353 ---g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~-~~ 428 (462)
.|++++|||++|+|+|+++.++ ..+.+.+.+.|++++++++++++|.+++ +|++.+++|++++++.+. .+
T Consensus 325 ~E~~~~~~lEAma~G~PvI~~~~~g-----~~e~i~~~~~g~l~~d~~~la~~i~~ll-~~~~~~~~~~~~a~~~~~~~f 398 (416)
T 2x6q_A 325 REGFGLTVTEAMWKGKPVIGRAVGG-----IKFQIVDGETGFLVRDANEAVEVVLYLL-KHPEVSKEMGAKAKERVRKNF 398 (416)
T ss_dssp SCSSCHHHHHHHHTTCCEEEESCHH-----HHHHCCBTTTEEEESSHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCccHHHHHHHcCCCEEEccCCC-----ChhheecCCCeEEECCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHc
Confidence 4899999999999999998631 2333444457888889999999999999 799999999999999875 78
Q ss_pred HHHHHHHHHHHHHhc
Q 012492 429 AVVDIVKDIHDLAAQ 443 (462)
Q Consensus 429 ~~~~ia~~i~~l~~~ 443 (462)
+++.+++.+.+++++
T Consensus 399 s~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 399 IITKHMERYLDILNS 413 (416)
T ss_dssp BHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998864
No 11
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.95 E-value=1.2e-27 Score=247.40 Aligned_cols=275 Identities=9% Similarity=0.043 Sum_probs=197.4
Q ss_pred HHHHHHHHh--hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC----------------------c---
Q 012492 154 KEVEAGLME--YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH----------------------P--- 206 (462)
Q Consensus 154 ~~l~~~l~~--~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~----------------------~--- 206 (462)
..+.+++++ .+||+||++.......+..+++. .++|+|...|+..... .
T Consensus 108 ~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~----~~~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (499)
T 2r60_A 108 NKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNI----KGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIA 183 (499)
T ss_dssp HHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----HCCCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHh----cCCcEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHH
Confidence 456677887 58999999875443333334443 3799998888752100 0
Q ss_pred -ccccCCCcEEEEcCHHHHHHHHHc---C-C----CCCcEEEcCCCCChhhhcccCC---hHHHHHHcC-----CCCCCc
Q 012492 207 -TWFHPRVNRCYCPSKEVAKRASYF---G-L----EVSQIRVFGLPIRPSFVRAVIS---KDNLRLELQ-----MDPILP 269 (462)
Q Consensus 207 -~~~~~~~d~~i~~s~~~~~~l~~~---g-i----~~~~i~v~g~pv~~~~~~~~~~---~~~~r~~l~-----l~~~~~ 269 (462)
.+..+.+|.++++|+..++.+.+. | + +..++.+++|+++...+.+... +..+|++++ ++++.+
T Consensus 184 ~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 263 (499)
T 2r60_A 184 ERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELP 263 (499)
T ss_dssp HHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSC
T ss_pred HHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCc
Confidence 122356899999999999887764 6 6 7789999999998776554222 266788888 777777
Q ss_pred EEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccC------------------CHHHHHHHhhccCCCCeEE
Q 012492 270 AVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGR------------------NRTLASTLQSEEWKIPVKV 331 (462)
Q Consensus 270 ~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~------------------~~~l~~~~~~~~~~~~V~~ 331 (462)
+++++|+....++...+++++ +.+.+. .++...++++|. ..++.+.++++++.++|.|
T Consensus 264 ~i~~vGrl~~~Kg~~~li~a~-~~l~~~---~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~ 339 (499)
T 2r60_A 264 AIIASSRLDQKKNHYGLVEAY-VQNKEL---QDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSM 339 (499)
T ss_dssp EEEECSCCCGGGCHHHHHHHH-HTCHHH---HHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEE
T ss_pred EEEEeecCccccCHHHHHHHH-HHHHHh---CCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEE
Confidence 666665544456666666555 445431 123323445555 1235666677788899999
Q ss_pred eccc--hhHHHHHHhc----chheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHH
Q 012492 332 RGFE--TQMEKWMGAC----DCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKET 399 (462)
Q Consensus 332 ~g~~--~~~~~l~~~a----D~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~l 399 (462)
.|++ +++.++|+.| |++|.+|. |++++|||++|+|+|+++.++ ..+.+.+...|++++ |++++
T Consensus 340 ~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g-----~~e~v~~~~~g~l~~~~d~~~l 414 (499)
T 2r60_A 340 FPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGG-----PAEILDGGKYGVLVDPEDPEDI 414 (499)
T ss_dssp EECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBH-----HHHHTGGGTSSEEECTTCHHHH
T ss_pred CCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCC-----HHHHhcCCceEEEeCCCCHHHH
Confidence 9997 7999999999 99998873 899999999999999998532 223333334677764 79999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHHh
Q 012492 400 ARIVTEWFSTKTDELKRMSENALKLAQP-EAVVDIVKDIHDLAA 442 (462)
Q Consensus 400 a~~i~~ll~~d~~~~~~m~~~a~~~~~~-~~~~~ia~~i~~l~~ 442 (462)
+++|.+++ +|++.+++|++++++.+.. ++++.+++.+.++++
T Consensus 415 a~~i~~ll-~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~ 457 (499)
T 2r60_A 415 ARGLLKAF-ESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQ 457 (499)
T ss_dssp HHHHHHHH-SCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999 7999999999999998876 899888888877663
No 12
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.95 E-value=1.8e-26 Score=233.54 Aligned_cols=267 Identities=18% Similarity=0.104 Sum_probs=192.2
Q ss_pred hhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC-c-------------c--------cccCCCcEEEEc
Q 012492 162 EYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH-P-------------T--------WFHPRVNRCYCP 219 (462)
Q Consensus 162 ~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~-~-------------~--------~~~~~~d~~i~~ 219 (462)
+.+||+|++++......+..+++. .++|+|...|+..... + . +..+.+|.++++
T Consensus 120 ~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 195 (439)
T 3fro_A 120 EPLPDVVHFHDWHTVFAGALIKKY----FKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTV 195 (439)
T ss_dssp SCCCSEEEEESGGGHHHHHHHHHH----HCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEES
T ss_pred CCCCeEEEecchhhhhhHHHHhhc----cCCCEEEEecccccccCchHHhCccccccccccceeeHhhhhhhhccEEEec
Confidence 459999999876554443444443 3899999999864210 0 0 112357999999
Q ss_pred CHHHHHHHHH-cCCCCCcEEEcCCCCChhhhccc-------CChHHHHHHcCCCCCCcEEEEEeCCC-CCccHHHHHHHH
Q 012492 220 SKEVAKRASY-FGLEVSQIRVFGLPIRPSFVRAV-------ISKDNLRLELQMDPILPAVLLMGGGE-GMGPVKETAMAL 290 (462)
Q Consensus 220 s~~~~~~l~~-~gi~~~~i~v~g~pv~~~~~~~~-------~~~~~~r~~l~l~~~~~~iLv~gG~~-~~~~~~~~l~~l 290 (462)
|+..++.... .+.+..++.+++|+++...+.+. ..+..++++++++++ ++++++|+.. ..++...+++++
T Consensus 196 S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~ 274 (439)
T 3fro_A 196 SRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAI 274 (439)
T ss_dssp CHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHH
T ss_pred CHHHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHH
Confidence 9988877443 24677899999999988765542 135678889999876 6666666555 456666666555
Q ss_pred HHhhhcccCCCCCceEEEEccCCH-H----HHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHH
Q 012492 291 GESLLDKETGRPIGQLIIICGRNR-T----LASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAE 359 (462)
Q Consensus 291 ~~~l~~~~~~~~~~~~lvv~G~~~-~----l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~E 359 (462)
+.+.+.. ..++++++++ |.+. . +.+..++++ ..+.+.|++ +++.++|+.||++|.+|. |++++|
T Consensus 275 -~~l~~~~-~~~~~~l~i~-G~g~~~~~~~l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~E 349 (439)
T 3fro_A 275 -EILSSKK-EFQEMRFIII-GKGDPELEGWARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALE 349 (439)
T ss_dssp -HHHHTSG-GGGGEEEEEE-CCCCHHHHHHHHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHH
T ss_pred -HHHHhcc-cCCCeEEEEE-cCCChhHHHHHHHHHhhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHH
Confidence 4554310 0157776654 5543 2 333344444 567789966 679999999999998873 899999
Q ss_pred HHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 012492 360 ALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDI 437 (462)
Q Consensus 360 Ala~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i 437 (462)
||++|+|+|+++.+ ....+++.|.|++++ |+++++++|.++++.|++.+++|++++++.++.++++.+++.+
T Consensus 350 Ama~G~Pvi~s~~~------~~~e~~~~~~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 423 (439)
T 3fro_A 350 AMCLGAIPIASAVG------GLRDIITNETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERY 423 (439)
T ss_dssp HHHTTCEEEEESST------HHHHHCCTTTCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHCCCCeEEcCCC------CcceeEEcCceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 99999999999863 233455556787776 7999999999999328999999999999999889999999999
Q ss_pred HHHHhcc
Q 012492 438 HDLAAQR 444 (462)
Q Consensus 438 ~~l~~~~ 444 (462)
.+++++-
T Consensus 424 ~~~~~~~ 430 (439)
T 3fro_A 424 VKAYTGS 430 (439)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 9998753
No 13
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.95 E-value=2.4e-26 Score=230.45 Aligned_cols=340 Identities=12% Similarity=0.043 Sum_probs=221.6
Q ss_pred CCCeEEEEecC---CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCc
Q 012492 61 RTKNVLILMSD---TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSP 137 (462)
Q Consensus 61 ~~~kIli~~~~---~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~ 137 (462)
+||||+|++.. ..+|+...+..++++|.++|+ +|.+.......... ....... ...+...+..
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~---~V~v~~~~~~~~~~--~~~~~~~------~~~~~~~~~~--- 84 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGH---EVSVLAPASPHVKL--PDYVVSG------GKAVPIPYNG--- 84 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTC---EEEEEESCCTTSCC--CTTEEEC------CCCC---------
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCC---eEEEEecCCccccC--CcccccC------CcEEeccccC---
Confidence 57899999853 335999999999999999875 44444322110000 0000000 0000000000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc---------cc
Q 012492 138 KWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP---------TW 208 (462)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~---------~~ 208 (462)
..... .........+.+++++++||+|+++++........+++. .++|+|...|+...... .+
T Consensus 85 -~~~~~---~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~ 156 (406)
T 2gek_A 85 -SVARL---RFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQA----AEGPIVATFHTSTTKSLTLSVFQGILRP 156 (406)
T ss_dssp ----------CCHHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHH----EESSEEEEECCCCCSHHHHHHHHSTTHH
T ss_pred -Ccccc---cccHHHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHh----cCCCEEEEEcCcchhhhhHHHHHHHHHH
Confidence 00000 001123356778899999999999887655443344443 37899988888542110 03
Q ss_pred ccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCC-CCCccHHHHH
Q 012492 209 FHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGG-EGMGPVKETA 287 (462)
Q Consensus 209 ~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~-~~~~~~~~~l 287 (462)
..+.+|.+++.|+..++.+.+ +++.+++ +++|+++...+.+...+ .+++++.+.++++|+. ...++...++
T Consensus 157 ~~~~~d~ii~~s~~~~~~~~~-~~~~~~~-vi~~~v~~~~~~~~~~~------~~~~~~~~~i~~~G~~~~~~Kg~~~li 228 (406)
T 2gek_A 157 YHEKIIGRIAVSDLARRWQME-ALGSDAV-EIPNGVDVASFADAPLL------DGYPREGRTVLFLGRYDEPRKGMAVLL 228 (406)
T ss_dssp HHTTCSEEEESSHHHHHHHHH-HHSSCEE-ECCCCBCHHHHHTCCCC------TTCSCSSCEEEEESCTTSGGGCHHHHH
T ss_pred HHhhCCEEEECCHHHHHHHHH-hcCCCcE-EecCCCChhhcCCCchh------hhccCCCeEEEEEeeeCccccCHHHHH
Confidence 346789999999999888866 3445678 99999987755432111 1233345666666655 4456666666
Q ss_pred HHHHHhhhcccCCCCCceEEEEccCCH--HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC-----hhhHH
Q 012492 288 MALGESLLDKETGRPIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG-----PGTIA 358 (462)
Q Consensus 288 ~~l~~~l~~~~~~~~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg-----~~t~~ 358 (462)
+++ +.+.+ +.|+++++++ |.+. .+.+.++++ .++|.+.|++ +++.++|+.||++|.+|. |++++
T Consensus 229 ~a~-~~l~~---~~~~~~l~i~-G~~~~~~l~~~~~~~--~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~ 301 (406)
T 2gek_A 229 AAL-PKLVA---RFPDVEILIV-GRGDEDELREQAGDL--AGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLV 301 (406)
T ss_dssp HHH-HHHHT---TSTTCEEEEE-SCSCHHHHHHHTGGG--GGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHH
T ss_pred HHH-HHHHH---HCCCeEEEEE-cCCcHHHHHHHHHhc--cCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHH
Confidence 554 45544 2467876654 5543 344444443 5789999999 466999999999998874 88999
Q ss_pred HHHHhCCCEEEecCCCCccccchHHHHHCCceeee--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 012492 359 EALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFT--RSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKD 436 (462)
Q Consensus 359 EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~--~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~ 436 (462)
|||++|+|+|+++.++ ..+.+.+.+.|+++ .++++++++|.+++ +|++.+++|++++++.+..++++++++.
T Consensus 302 Ea~a~G~PvI~~~~~~-----~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 375 (406)
T 2gek_A 302 EAMAAGTAVVASDLDA-----FRRVLADGDAGRLVPVDDADGMAAALIGIL-EDDQLRAGYVARASERVHRYDWSVVSAQ 375 (406)
T ss_dssp HHHHHTCEEEECCCHH-----HHHHHTTTTSSEECCTTCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHGGGGBHHHHHHH
T ss_pred HHHHcCCCEEEecCCc-----HHHHhcCCCceEEeCCCCHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999998621 23334444567777 58999999999999 6999999999999999888999999999
Q ss_pred HHHHHhc
Q 012492 437 IHDLAAQ 443 (462)
Q Consensus 437 i~~l~~~ 443 (462)
+.+++++
T Consensus 376 ~~~~~~~ 382 (406)
T 2gek_A 376 IMRVYET 382 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887753
No 14
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.95 E-value=6.9e-27 Score=233.37 Aligned_cols=344 Identities=13% Similarity=0.046 Sum_probs=231.7
Q ss_pred CCCeEEEEec---CCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCc
Q 012492 61 RTKNVLILMS---DTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSP 137 (462)
Q Consensus 61 ~~~kIli~~~---~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~ 137 (462)
+||||++++. +..||+...+..|+++| +|+ .+.++..+. .... ...+.. .....+.....
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~-~v~v~~~~~-------~~~~-~~~~~~------~~~~~~~~~~~ 65 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPE-SIVVFASTQ-------NAEE-AHAYDK------TLDYEVIRWPR 65 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGG-GEEEEEECS-------SHHH-HHHHHT------TCSSEEEEESS
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh--cCC-eEEEEECCC-------Cccc-hhhhcc------ccceEEEEccc
Confidence 5789999985 22369999999999999 354 233333211 1100 011110 00000000000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCe-EEEEecCCCCCC---------cc
Q 012492 138 KWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVI-FVTVITDLNTCH---------PT 207 (462)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP-~v~~~~d~~~~~---------~~ 207 (462)
..... .......+.+++++.+||+|+++++........+++. .++| +|...|+..... ..
T Consensus 66 ~~~~~------~~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~----~~~~~~i~~~h~~~~~~~~~~~~~~~~~ 135 (394)
T 3okp_A 66 SVMLP------TPTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQ----AGASKVIASTHGHEVGWSMLPGSRQSLR 135 (394)
T ss_dssp SSCCS------CHHHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHH----TTCSEEEEECCSTHHHHTTSHHHHHHHH
T ss_pred ccccc------chhhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHh----cCCCcEEEEeccchhhhhhcchhhHHHH
Confidence 00000 1234456778899999999999886554443344554 3676 666666542100 01
Q ss_pred cccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcc-c-CChHHHHHHcCCCCCCcEEEEEeCCCCCccHHH
Q 012492 208 WFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRA-V-ISKDNLRLELQMDPILPAVLLMGGGEGMGPVKE 285 (462)
Q Consensus 208 ~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~-~-~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~ 285 (462)
++.+.+|.++++|+..++.+.+.+.+..++.+++|+++...+.+ . ..+..++++++++++.++++++|+....++...
T Consensus 136 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~ 215 (394)
T 3okp_A 136 KIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDS 215 (394)
T ss_dssp HHHHHCSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHH
T ss_pred HHHHhCCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCceEEEEEeccccccCHHH
Confidence 23466899999999999998876545688999999998876543 1 234678899999887777766665544555666
Q ss_pred HHHHHHHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecC--------
Q 012492 286 TAMALGESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKA-------- 352 (462)
Q Consensus 286 ~l~~l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~s-------- 352 (462)
+++++ +.+.+. .+++++++ +|.+. .+.+.. .++.++|.+.|++ +++.++|+.||++|.+|
T Consensus 216 li~a~-~~l~~~---~~~~~l~i-~G~g~~~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~ 288 (394)
T 3okp_A 216 LIKAM-PQVIAA---RPDAQLLI-VGSGRYESTLRRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288 (394)
T ss_dssp HHHHH-HHHHHH---STTCEEEE-ECCCTTHHHHHHHT--GGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTB
T ss_pred HHHHH-HHHHhh---CCCeEEEE-EcCchHHHHHHHHH--hcccCeEEEcCCCCHHHHHHHHHhCCEEEecCcccccccc
Confidence 66544 455442 46777655 45543 122322 4566899999999 89999999999999754
Q ss_pred ---ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 012492 353 ---GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQP 427 (462)
Q Consensus 353 ---g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~ 427 (462)
.|++++|||++|+|+|+++.++..+ +++.|.|++++ ++++++++|.+++ +|++.+++|++++++.+..
T Consensus 289 ~e~~~~~~~Ea~a~G~PvI~~~~~~~~e------~i~~~~g~~~~~~d~~~l~~~i~~l~-~~~~~~~~~~~~~~~~~~~ 361 (394)
T 3okp_A 289 VEGLGIVYLEAQACGVPVIAGTSGGAPE------TVTPATGLVVEGSDVDKLSELLIELL-DDPIRRAAMGAAGRAHVEA 361 (394)
T ss_dssp CCSSCHHHHHHHHTTCCEEECSSTTGGG------GCCTTTEEECCTTCHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHcCCCEEEeCCCChHH------HHhcCCceEeCCCCHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHH
Confidence 3789999999999999998753222 34445788776 8999999999999 7999999999999998864
Q ss_pred -cHHHHHHHHHHHHHhccC
Q 012492 428 -EAVVDIVKDIHDLAAQRG 445 (462)
Q Consensus 428 -~~~~~ia~~i~~l~~~~~ 445 (462)
++++.+++.+.+++++-.
T Consensus 362 ~~s~~~~~~~~~~~~~~~~ 380 (394)
T 3okp_A 362 EWSWEIMGERLTNILQSEP 380 (394)
T ss_dssp HTBHHHHHHHHHHHHHSCC
T ss_pred hCCHHHHHHHHHHHHHHhc
Confidence 899999999999997653
No 15
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.95 E-value=3.4e-27 Score=237.66 Aligned_cols=345 Identities=15% Similarity=0.108 Sum_probs=219.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecccc-----ccCCCchhhH----HHHHHHHhhhHHHHHH
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE-----YAGWPLNDME----RSYKFMVKHVQLWKVA 131 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~-----~~~~~~~~~~----~~y~~~~~~~~l~~~~ 131 (462)
.+|||+|++++. +||..++.+|+++|+++|| +|.+...... ..+.....+. ..+.. .+...
T Consensus 19 ~~MrIl~~~~~~-~Gh~~~~~~la~~L~~~Gh---eV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~ 88 (412)
T 3otg_A 19 RHMRVLFASLGT-HGHTYPLLPLATAARAAGH---EVTFATGEGFAGTLRKLGFEPVATGMPVFDGFLA------ALRIR 88 (412)
T ss_dssp CSCEEEEECCSS-HHHHGGGHHHHHHHHHTTC---EEEEEECGGGHHHHHHTTCEEEECCCCHHHHHHH------HHHHH
T ss_pred ceeEEEEEcCCC-cccHHHHHHHHHHHHHCCC---EEEEEccHHHHHHHHhcCCceeecCcccccchhh------hhhhh
Confidence 568999999886 6999999999999999986 4444321100 0111111110 00000 00000
Q ss_pred hhcCC---------cchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCC
Q 012492 132 FHSTS---------PKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLN 202 (462)
Q Consensus 132 ~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~ 202 (462)
+.... .......+..........++.+++++++||+||+++..... ..+++. .++|+|.+.++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~--~~aa~~----~giP~v~~~~~~~ 162 (412)
T 3otg_A 89 FDTDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGA--GLAALK----AGIPTICHGVGRD 162 (412)
T ss_dssp HSCSCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHH--HHHHHH----HTCCEEEECCSCC
T ss_pred hcccCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHH--HHHHHH----cCCCEEEeccccc
Confidence 00000 00011111111022344678889999999999998655443 244554 3899988766643
Q ss_pred CCCcc-------c----------------ccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHH
Q 012492 203 TCHPT-------W----------------FHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLR 259 (462)
Q Consensus 203 ~~~~~-------~----------------~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r 259 (462)
. .+. | .....|.+++.++...+..... +...+++++......... +
T Consensus 163 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----~ 231 (412)
T 3otg_A 163 T-PDDLTRSIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFR------ARPRRHELRPVPFAEQGD----L 231 (412)
T ss_dssp C-CSHHHHHHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHH------TCTTEEECCCCCCCCCCC----C
T ss_pred C-chhhhHHHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCccc------CCCCcceeeccCCCCCCC----C
Confidence 1 100 0 1123456676665544333221 111122222111110001 1
Q ss_pred HHc--CCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchh
Q 012492 260 LEL--QMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQ 337 (462)
Q Consensus 260 ~~l--~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~ 337 (462)
..+ ..+++.+++++++|+.+ ++..+.+..+++.+.+ .++++++++|.+. ..+.++ ++..+|.+.||+ +
T Consensus 232 ~~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~-----~~~~~~~~~g~~~-~~~~l~--~~~~~v~~~~~~-~ 301 (412)
T 3otg_A 232 PAWLSSRDTARPLVYLTLGTSS-GGTVEVLRAAIDGLAG-----LDADVLVASGPSL-DVSGLG--EVPANVRLESWV-P 301 (412)
T ss_dssp CGGGGGSCTTSCEEEEECTTTT-CSCHHHHHHHHHHHHT-----SSSEEEEECCSSC-CCTTCC--CCCTTEEEESCC-C
T ss_pred CCccccccCCCCEEEEEcCCCC-cCcHHHHHHHHHHHHc-----CCCEEEEEECCCC-Chhhhc--cCCCcEEEeCCC-C
Confidence 112 22456788999999887 4455666666666654 2567888888764 122232 346799999999 7
Q ss_pred HHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHH
Q 012492 338 MEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDE 413 (462)
Q Consensus 338 ~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~ 413 (462)
+.++|+.||++|+++|++|++|||++|+|+|++|.. ++|..|++.+.+.|+|..+. +++++++++.+++ +|++.
T Consensus 302 ~~~~l~~ad~~v~~~g~~t~~Ea~a~G~P~v~~p~~-~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll-~~~~~ 379 (412)
T 3otg_A 302 QAALLPHVDLVVHHGGSGTTLGALGAGVPQLSFPWA-GDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLL-AEESY 379 (412)
T ss_dssp HHHHGGGCSEEEESCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHH-HCHHH
T ss_pred HHHHHhcCcEEEECCchHHHHHHHHhCCCEEecCCc-hhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHH-hCHHH
Confidence 999999999999999999999999999999999876 44566999999999999886 6899999999999 79999
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 414 LKRMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 414 ~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
+++|++.+++++..++++++++.+++++.+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 410 (412)
T 3otg_A 380 RAGARAVAAEIAAMPGPDEVVRLLPGFASRS 410 (412)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHTTHHHHHC--
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999998653
No 16
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.95 E-value=3.4e-27 Score=234.05 Aligned_cols=342 Identities=15% Similarity=0.137 Sum_probs=226.7
Q ss_pred CeEEEEec---CCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcch
Q 012492 63 KNVLILMS---DTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW 139 (462)
Q Consensus 63 ~kIli~~~---~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 139 (462)
|||++++. +. ||....+..++++|+++|++ +.++..+... .. ...+ +....... .
T Consensus 1 MkIl~i~~~~~~~-gG~~~~~~~l~~~L~~~G~~-V~v~~~~~~~---~~-~~~~-----------~v~~~~~~-----~ 58 (374)
T 2iw1_A 1 MIVAFCLYKYFPF-GGLQRDFMRIASTVAARGHH-VRVYTQSWEG---DC-PKAF-----------ELIQVPVK-----S 58 (374)
T ss_dssp -CEEEECSEECTT-CHHHHHHHHHHHHHHHTTCC-EEEEESEECS---CC-CTTC-----------EEEECCCC-----C
T ss_pred CeEEEEEeecCCC-cchhhHHHHHHHHHHhCCCe-EEEEecCCCC---CC-CCCc-----------EEEEEccC-----c
Confidence 79999964 34 59999999999999999863 2333221110 00 0000 00000000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-CCc---------ccc
Q 012492 140 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-CHP---------TWF 209 (462)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~~---------~~~ 209 (462)
.... .....+...+.+.+++.+||+|+++..........+++ ...+|.+...+.... ... .+.
T Consensus 59 ~~~~---~~~~~~~~~l~~~i~~~~~Dvv~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 2iw1_A 59 HTNH---GRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAAD----VCYAEKVAQEKGFLYRLTSRYRHYAAFERAT 131 (374)
T ss_dssp SSHH---HHHHHHHHHHHHHHHHSCCSEEEESSCCTTCSEEECCS----CCHHHHHHHHCCHHHHTSHHHHHHHHHHHHH
T ss_pred ccch---hhHHHHHHHHHHHHhccCCCEEEEecCCCCceeeeccc----cccceeeeecccchhhhcHHHHHHHHHHHHH
Confidence 0000 01123345677889999999999887533211000000 012232211111100 000 001
Q ss_pred --cCCCcEEEEcCHHHHHHHHH-cCCCCCcEEEcCCCCChhhhcccC---ChHHHHHHcCCCCCCcEEEEEeCCCCCccH
Q 012492 210 --HPRVNRCYCPSKEVAKRASY-FGLEVSQIRVFGLPIRPSFVRAVI---SKDNLRLELQMDPILPAVLLMGGGEGMGPV 283 (462)
Q Consensus 210 --~~~~d~~i~~s~~~~~~l~~-~gi~~~~i~v~g~pv~~~~~~~~~---~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~ 283 (462)
.+.+|.++++|+..++.+.+ .|++..++.+++|+++...+.+.. .++.++++++++++.++++++|+....++.
T Consensus 132 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~ 211 (374)
T 2iw1_A 132 FEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGV 211 (374)
T ss_dssp HSTTCCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTH
T ss_pred hhccCCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhCCCCCCeEEEEeccchhhcCH
Confidence 12689999999999998876 488888999999999877655422 245788999998777777777665555666
Q ss_pred HHHHHHHHHhhhcccCCCCCceEEEEccCC--HHHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecC----ChhhH
Q 012492 284 KETAMALGESLLDKETGRPIGQLIIICGRN--RTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKA----GPGTI 357 (462)
Q Consensus 284 ~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~--~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~s----g~~t~ 357 (462)
..+++++ +.+.+.. .++++++++ |.+ .++.+.++++++.++|++.|+.+++.++|+.||++|.+| .|+++
T Consensus 212 ~~li~a~-~~l~~~~--~~~~~l~i~-G~g~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~~e~~~~~~ 287 (374)
T 2iw1_A 212 DRSIEAL-ASLPESL--RHNTLLFVV-GQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVL 287 (374)
T ss_dssp HHHHHHH-HTSCHHH--HHTEEEEEE-SSSCCHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHH
T ss_pred HHHHHHH-HHhHhcc--CCceEEEEE-cCCCHHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccccCCcccHH
Confidence 6666554 4453310 146666554 443 246666777777889999999999999999999999877 48999
Q ss_pred HHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC---CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHH
Q 012492 358 AEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR---SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIV 434 (462)
Q Consensus 358 ~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~---~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia 434 (462)
+|||++|+|+|+++.++ +.+.+.+.+.|++++ ++++++++|.+++ +|++.+++|++++++.+..++++.++
T Consensus 288 ~Ea~a~G~Pvi~~~~~~-----~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T 2iw1_A 288 LEAITAGLPVLTTAVCG-----YAHYIADANCGTVIAEPFSQEQLNEVLRKAL-TQSPLRMAWAENARHYADTQDLYSLP 361 (374)
T ss_dssp HHHHHHTCCEEEETTST-----TTHHHHHHTCEEEECSSCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHSCCSCHH
T ss_pred HHHHHCCCCEEEecCCC-----chhhhccCCceEEeCCCCCHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999998743 344566667888875 7999999999999 69999999999999998888788888
Q ss_pred HHHHHHHhc
Q 012492 435 KDIHDLAAQ 443 (462)
Q Consensus 435 ~~i~~l~~~ 443 (462)
+.+.+++++
T Consensus 362 ~~~~~~l~~ 370 (374)
T 2iw1_A 362 EKAADIITG 370 (374)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 888887764
No 17
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.94 E-value=7.2e-25 Score=220.67 Aligned_cols=335 Identities=13% Similarity=0.142 Sum_probs=218.3
Q ss_pred CeEEEEec--CCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhH---HHHHHHHhhhHHHHHHhhcCCc
Q 012492 63 KNVLILMS--DTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDME---RSYKFMVKHVQLWKVAFHSTSP 137 (462)
Q Consensus 63 ~kIli~~~--~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~---~~y~~~~~~~~l~~~~~~~~~~ 137 (462)
|||+|++. +.+||....+..|+++|.++ | +|.+...... ......... ..... ..+....
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~---~V~v~~~~~~-g~~~~~~~~~~~~~~~~----------~~~~~~~ 65 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-H---EVIVFGIHAF-GRSVHANIEEFDAQTAE----------HVRGLNE 65 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-S---EEEEEEESCC-SCCSCSSSEEEEHHHHH----------HHTTCCS
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-C---CeEEEeecCC-CcccccccccCCccccc----------ccccccc
Confidence 79999973 45579999999999999998 5 3333322111 101111100 00000 0010000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC---CcccccCCCc
Q 012492 138 KWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC---HPTWFHPRVN 214 (462)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~---~~~~~~~~~d 214 (462)
.. +...++.+.+++.+||+|+++.... .....+++..+.....+++...+..... ...|+.+.+|
T Consensus 66 ~~-----------~~~~~l~~~l~~~~~Div~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (413)
T 3oy2_A 66 QG-----------FYYSGLSEFIDVHKPDIVMIYNDPI-VIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPK 133 (413)
T ss_dssp TT-----------CCHHHHHHHHHHHCCSEEEEEECHH-HHHHHHHHGGGCCSCCEEEEEECCCSBSCCGGGGGGGGCTT
T ss_pred cc-----------chHHHHHHHHHhcCCCEEEEcchHH-HHHHHHHHhccCCCCCceeeeccccchhhHHHHHHHHhccC
Confidence 00 1112345668899999999984332 2222333332211123444444443211 1135566767
Q ss_pred --EEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCC--CCcEEEEEeCCCCCccHHHHHHHH
Q 012492 215 --RCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDP--ILPAVLLMGGGEGMGPVKETAMAL 290 (462)
Q Consensus 215 --~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~--~~~~iLv~gG~~~~~~~~~~l~~l 290 (462)
.++++|+..++.+.+.|+ +.++.+++|+++...+ ...++++++++ +.++++++|+....++...+++++
T Consensus 134 ~~~ii~~S~~~~~~~~~~~~-~~~~~vi~ngvd~~~~------~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~ 206 (413)
T 3oy2_A 134 VVGVMAMSKCWISDICNYGC-KVPINIVSHFVDTKTI------YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAA 206 (413)
T ss_dssp EEEEEESSTHHHHHHHHTTC-CSCEEECCCCCCCCCC------TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHH
T ss_pred CceEEEcCHHHHHHHHHcCC-CCceEEeCCCCCHHHH------HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHH
Confidence 999999999999998877 5789999999987654 24567788876 666555555544455566666555
Q ss_pred HHhhhcccCCCCCceEEEEccCC--------HHHHHHHhhccCCCC-------eEEeccc--hhHHHHHHhcchheecCC
Q 012492 291 GESLLDKETGRPIGQLIIICGRN--------RTLASTLQSEEWKIP-------VKVRGFE--TQMEKWMGACDCIITKAG 353 (462)
Q Consensus 291 ~~~l~~~~~~~~~~~~lvv~G~~--------~~l~~~~~~~~~~~~-------V~~~g~~--~~~~~l~~~aD~vV~~sg 353 (462)
+.+.+. .|+++++++++.. ..+.+.++++++.++ +.+.|++ +++.++|+.||++|.+|.
T Consensus 207 -~~l~~~---~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~ 282 (413)
T 3oy2_A 207 -ARFISK---YPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS 282 (413)
T ss_dssp -HHHHHH---CTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS
T ss_pred -HHHHHh---CCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC
Confidence 444432 4678776654332 334555666778776 7788997 599999999999998874
Q ss_pred ----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCc----------------ee--ee--CCHHHHHHHHHHHhcC
Q 012492 354 ----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGA----------------GV--FT--RSPKETARIVTEWFST 409 (462)
Q Consensus 354 ----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~----------------g~--~~--~~~~~la~~i~~ll~~ 409 (462)
|++++|||++|+|+|+++.++ ...+++.|. |+ ++ .++++++++| +++ +
T Consensus 283 ~E~~~~~~lEAma~G~PvI~s~~~g------~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~-~ 354 (413)
T 3oy2_A 283 GEGFGLCSAEGAVLGKPLIISAVGG------ADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFF-K 354 (413)
T ss_dssp CCSSCHHHHHHHTTTCCEEEECCHH------HHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHT-T
T ss_pred cCCCCcHHHHHHHcCCCEEEcCCCC------hHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHh-c
Confidence 889999999999999998642 222333322 33 43 5899999999 999 7
Q ss_pred CHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHhc
Q 012492 410 KTDELKRMSENALKLA-QPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 410 d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~l~~~ 443 (462)
|++.+++|++++++.+ +.++++.+++.+++++++
T Consensus 355 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 389 (413)
T 3oy2_A 355 DEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNS 389 (413)
T ss_dssp SHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999987 578999999999988764
No 18
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.94 E-value=1.3e-25 Score=226.43 Aligned_cols=352 Identities=12% Similarity=0.026 Sum_probs=213.1
Q ss_pred cCCCCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecccc-----ccCCCchhhHHHHHHHHhhhHHHHHH
Q 012492 57 IGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE-----YAGWPLNDMERSYKFMVKHVQLWKVA 131 (462)
Q Consensus 57 ~~~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~-----~~~~~~~~~~~~y~~~~~~~~l~~~~ 131 (462)
.+.+.||||+|++.+. .||..++.+|+++|+++|| +|.+...... ..+..+..+...+.. .......
T Consensus 15 ~~~~~m~rIl~~~~~~-~GHv~p~l~La~~L~~~Gh---~V~v~~~~~~~~~~~~~G~~~~~~~~~~~~----~~~~~~~ 86 (415)
T 3rsc_A 15 IEGRHMAHLLIVNVAS-HGLILPTLTVVTELVRRGH---RVSYVTAGGFAEPVRAAGATVVPYQSEIID----ADAAEVF 86 (415)
T ss_dssp ----CCCEEEEECCSC-HHHHGGGHHHHHHHHHTTC---EEEEEECGGGHHHHHHTTCEEEECCCSTTT----CCHHHHH
T ss_pred cCcccCCEEEEEeCCC-ccccccHHHHHHHHHHCCC---EEEEEeCHHHHHHHHhcCCEEEeccccccc----cccchhh
Confidence 3455789999999875 7999999999999999986 4444421100 001100000000000 0000000
Q ss_pred hhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccccc-
Q 012492 132 FHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFH- 210 (462)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~- 210 (462)
........+...+ ..........+.+.+++++||+||++++.... ...+++. .++|++.+.+++. .+..|..
T Consensus 87 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~-~~~aA~~----~giP~v~~~~~~~-~~~~~~~~ 159 (415)
T 3rsc_A 87 GSDDLGVRPHLMY-LRENVSVLRATAEALDGDVPDLVLYDDFPFIA-GQLLAAR----WRRPAVRLSAAFA-SNEHYSFS 159 (415)
T ss_dssp HSSSSCHHHHHHH-HHHHHHHHHHHHHHHSSSCCSEEEEESTTHHH-HHHHHHH----TTCCEEEEESSCC-CCSSCCHH
T ss_pred ccccHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCEEEECchhhhH-HHHHHHH----hCCCEEEEEeccc-ccCccccc
Confidence 0000000111101 11122345678889999999999987332222 1334554 4899998887653 1221111
Q ss_pred --------CCCcEEEE-cCHHHHHHHHHcCCC-----------------------------CCcEEEcCCCCChhhhccc
Q 012492 211 --------PRVNRCYC-PSKEVAKRASYFGLE-----------------------------VSQIRVFGLPIRPSFVRAV 252 (462)
Q Consensus 211 --------~~~d~~i~-~s~~~~~~l~~~gi~-----------------------------~~~i~v~g~pv~~~~~~~~ 252 (462)
........ ......+.+.+.|++ +.++.++|.++....
T Consensus 160 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~~---- 235 (415)
T 3rsc_A 160 QDMVTLAGTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPCFDDRR---- 235 (415)
T ss_dssp HHHHHHHTCCCGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGCCTTEEECCCCCCCCG----
T ss_pred cccccccccCChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccCCCceEEeCCCCCCcc----
Confidence 00000000 000111112223332 123444443332110
Q ss_pred CChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEe
Q 012492 253 ISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVR 332 (462)
Q Consensus 253 ~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~ 332 (462)
........+++.++|++++|+.+... .+.+..+++.+.+ . ++++++++|.+.. .+.++ ....|+.+.
T Consensus 236 ----~~~~~~~~~~~~~~v~v~~Gs~~~~~-~~~~~~~~~al~~----~-~~~~v~~~g~~~~-~~~l~--~~~~~v~~~ 302 (415)
T 3rsc_A 236 ----FLGEWTRPADDLPVVLVSLGTTFNDR-PGFFRDCARAFDG----Q-PWHVVMTLGGQVD-PAALG--DLPPNVEAH 302 (415)
T ss_dssp ----GGCCCCCCSSCCCEEEEECTTTSCCC-HHHHHHHHHHHTT----S-SCEEEEECTTTSC-GGGGC--CCCTTEEEE
T ss_pred ----cCcCccccCCCCCEEEEECCCCCCCh-HHHHHHHHHHHhc----C-CcEEEEEeCCCCC-hHHhc--CCCCcEEEE
Confidence 00001111346788999988876543 3455556566543 2 3788888887632 12232 345799999
Q ss_pred ccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhc
Q 012492 333 GFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFS 408 (462)
Q Consensus 333 g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~ 408 (462)
+|++++ ++|+.||++|+++|++|++||+++|+|+|+.|. .++|..|+..+.+.|+|..+. +++.+++++.+++
T Consensus 303 ~~~~~~-~ll~~ad~~v~~~G~~t~~Ea~~~G~P~v~~p~-~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll- 379 (415)
T 3rsc_A 303 RWVPHV-KVLEQATVCVTHGGMGTLMEALYWGRPLVVVPQ-SFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVA- 379 (415)
T ss_dssp SCCCHH-HHHHHEEEEEESCCHHHHHHHHHTTCCEEECCC-SGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHH-
T ss_pred ecCCHH-HHHhhCCEEEECCcHHHHHHHHHhCCCEEEeCC-cchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHH-
Confidence 999887 999999999999999999999999999999987 445667999999999998875 6789999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 409 TKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 409 ~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
+|++.+++|++.++++....+++++++.|++++.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 380 ADPALLARVEAMRGHVRRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp TCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 79999999999999999999999999999998753
No 19
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.94 E-value=8.3e-25 Score=219.22 Aligned_cols=346 Identities=11% Similarity=0.060 Sum_probs=214.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecccc-----ccCCCchhhHHHHHHHHhhhHHHHHHhhcC
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE-----YAGWPLNDMERSYKFMVKHVQLWKVAFHST 135 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~-----~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 135 (462)
.||||+|++.+. .||..+..+|+++|+++|| +|.+...... ..+..+..+...+ +.....-...
T Consensus 3 ~M~~il~~~~~~-~Ghv~~~~~La~~L~~~Gh---eV~v~~~~~~~~~~~~~G~~~~~~~~~~-------~~~~~~~~~~ 71 (402)
T 3ia7_A 3 RQRHILFANVQG-HGHVYPSLGLVSELARRGH---RITYVTTPLFADEVKAAGAEVVLYKSEF-------DTFHVPEVVK 71 (402)
T ss_dssp CCCEEEEECCSS-HHHHHHHHHHHHHHHHTTC---EEEEEECHHHHHHHHHTTCEEEECCCGG-------GTSSSSSSSC
T ss_pred CCCEEEEEeCCC-CcccccHHHHHHHHHhCCC---EEEEEcCHHHHHHHHHcCCEEEeccccc-------cccccccccc
Confidence 356999998875 7999999999999999986 4444421000 0011000000000 0000000000
Q ss_pred CcchhhHHH--HHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccccc---
Q 012492 136 SPKWIHSCY--LAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFH--- 210 (462)
Q Consensus 136 ~~~~~~~~~--~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~--- 210 (462)
......... ...........+.+.+++++||+||++++.... ...+++. .++|+|.+.+++.. +..|..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~-~~~aA~~----~giP~v~~~~~~~~-~~~~~~~~~ 145 (402)
T 3ia7_A 72 QEDAETQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIA-GRLLAAR----WDRPAVRLTGGFAA-NEHYSLFKE 145 (402)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHH-HHHHHHH----HTCCEEEEESSCCC-BTTBCHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHH-HHHHHHh----hCCCEEEEeccccc-Ccccccccc
Confidence 000111110 011122345678889999999999998432222 2334444 38999988766531 111111
Q ss_pred --------------------------------------CCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhccc
Q 012492 211 --------------------------------------PRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAV 252 (462)
Q Consensus 211 --------------------------------------~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~ 252 (462)
...+..++..+...+.... .. +.++.++|+++....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~~vGp~~~~~~---- 219 (402)
T 3ia7_A 146 LWKSNGQRHPADVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAE-TF-DERFAFVGPTLTGRD---- 219 (402)
T ss_dssp HHHHHTCCCGGGSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGG-GC-CTTEEECCCCCCC------
T ss_pred ccccccccChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccc-cC-CCCeEEeCCCCCCcc----
Confidence 0002233322222111100 01 123555554332110
Q ss_pred CChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEe
Q 012492 253 ISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVR 332 (462)
Q Consensus 253 ~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~ 332 (462)
........++++++|++++|+.+... .+.+..+++.+.+ .++++++++|.+.. .+.++ ....|+.+.
T Consensus 220 ----~~~~~~~~~~~~~~v~v~~G~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~g~~~~-~~~~~--~~~~~v~~~ 286 (402)
T 3ia7_A 220 ----GQPGWQPPRPDAPVLLVSLGNQFNEH-PEFFRACAQAFAD-----TPWHVVMAIGGFLD-PAVLG--PLPPNVEAH 286 (402)
T ss_dssp ------CCCCCSSTTCCEEEEECCSCSSCC-HHHHHHHHHHHTT-----SSCEEEEECCTTSC-GGGGC--SCCTTEEEE
T ss_pred ----cCCCCcccCCCCCEEEEECCCCCcch-HHHHHHHHHHHhc-----CCcEEEEEeCCcCC-hhhhC--CCCCcEEEe
Confidence 00001111346678899988887654 3455566666643 23678888887632 12232 246799999
Q ss_pred ccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhc
Q 012492 333 GFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFS 408 (462)
Q Consensus 333 g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~ 408 (462)
||.+++ ++|+.||++|+++|++|++||+++|+|+|+.|.+.++|..|+..+.+.|+|..+. +++.+++++.+++
T Consensus 287 ~~~~~~-~ll~~ad~~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll- 364 (402)
T 3ia7_A 287 QWIPFH-SVLAHARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLA- 364 (402)
T ss_dssp SCCCHH-HHHTTEEEEEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHH-
T ss_pred cCCCHH-HHHhhCCEEEECCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHH-
Confidence 999888 9999999999999999999999999999999873455677999999999998876 6899999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 409 TKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 409 ~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
+|++.+++|++.++++....+++++++.+++++.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 400 (402)
T 3ia7_A 365 ADSAVRERVRRMQRDILSSGGPARAADEVEAYLGRV 400 (402)
T ss_dssp HCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhc
Confidence 799999999999999999999999999999998654
No 20
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.93 E-value=8.4e-26 Score=226.70 Aligned_cols=346 Identities=15% Similarity=0.109 Sum_probs=190.6
Q ss_pred CCCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec--ccc---ccCCCchhhHH--HHHHHHhhh---HHH
Q 012492 59 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV--CKE---YAGWPLNDMER--SYKFMVKHV---QLW 128 (462)
Q Consensus 59 ~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~--~~~---~~~~~~~~~~~--~y~~~~~~~---~l~ 128 (462)
.+.+|||+|++.+. .||..++.+|+++|+++|| +|.+... +.. ..+.....+.. .+....... ..+
T Consensus 12 ~~~~MrIl~~~~~~-~gh~~~~~~La~~L~~~Gh---eV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
T 4fzr_A 12 RGSHMRILVIAGCS-EGFVMPLVPLSWALRAAGH---EVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRT 87 (398)
T ss_dssp ---CCEEEEECCSS-HHHHGGGHHHHHHHHHTTC---EEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBC
T ss_pred CCCceEEEEEcCCC-cchHHHHHHHHHHHHHCCC---EEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCccc
Confidence 34568999999875 7999999999999999986 4443321 100 01111111000 000000000 000
Q ss_pred HHHhhcCC-cchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcc
Q 012492 129 KVAFHSTS-PKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPT 207 (462)
Q Consensus 129 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~ 207 (462)
...+.... .......+ .........++.+++++++||+||++...... ..+++. .++|+|.+.++... +..
T Consensus 88 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~--~~~a~~----~giP~v~~~~~~~~-~~~ 159 (398)
T 4fzr_A 88 TMPREEKPLLEHIGRGY-GRLVLRMRDEALALAERWKPDLVLTETYSLTG--PLVAAT----LGIPWIEQSIRLAS-PEL 159 (398)
T ss_dssp CCCSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCSEEEEETTCTHH--HHHHHH----HTCCEEEECCSSCC-CHH
T ss_pred ccccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCEEEECccccHH--HHHHHh----hCCCEEEeccCCCC-chh
Confidence 00000000 00000111 11122345678889999999999987633322 344444 38999987776531 111
Q ss_pred c-------cc-----------CCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCc
Q 012492 208 W-------FH-----------PRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILP 269 (462)
Q Consensus 208 ~-------~~-----------~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~ 269 (462)
+ +. ...+..+...+........ .....+.+++.. .....+...+..+++.+
T Consensus 160 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 228 (398)
T 4fzr_A 160 IKSAGVGELAPELAELGLTDFPDPLLSIDVCPPSMEAQPK--PGTTKMRYVPYN---------GRNDQVPSWVFEERKQP 228 (398)
T ss_dssp HHHHHHHHTHHHHHTTTCSSCCCCSEEEECSCGGGC------CCCEECCCCCCC---------CSSCCCCHHHHSCCSSC
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCCCeEEEeCChhhCCCCC--CCCCCeeeeCCC---------CCCCCCchhhhcCCCCC
Confidence 0 00 0112222222211111000 000001111100 00111111122234567
Q ss_pred EEEEEeCCCCCcc-------HHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHH
Q 012492 270 AVLLMGGGEGMGP-------VKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWM 342 (462)
Q Consensus 270 ~iLv~gG~~~~~~-------~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~ 342 (462)
.|+++.|+....+ ..+.+..+++.+.+ .++++++++|... .+.++ .+..||.+.||+ ++.++|
T Consensus 229 ~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~-----~~~~~v~~~~~~~--~~~l~--~~~~~v~~~~~~-~~~~ll 298 (398)
T 4fzr_A 229 RLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK-----LGFEVVVAVSDKL--AQTLQ--PLPEGVLAAGQF-PLSAIM 298 (398)
T ss_dssp EEECC----------------CCSHHHHHHHGGG-----GTCEEEECCCC------------CCTTEEEESCC-CHHHHG
T ss_pred EEEEEccCcccccccccccchHHHHHHHHHHHHh-----CCCEEEEEeCCcc--hhhhc--cCCCcEEEeCcC-CHHHHH
Confidence 8888888774322 22233444444443 1467777766553 23333 246799999999 589999
Q ss_pred HhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHH
Q 012492 343 GACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMS 418 (462)
Q Consensus 343 ~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~ 418 (462)
+.||++|+++|++|++|||++|+|+|++|.. ++|..|++.+.+.|+|+.++ +++.+++++.+++ +|++.+++|+
T Consensus 299 ~~ad~~v~~gG~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 376 (398)
T 4fzr_A 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVI-AEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIR-DDSSYVGNAR 376 (398)
T ss_dssp GGCSEEEECCCHHHHHHHHHTTCCEEECCCS-GGGHHHHHHHHHTTSEEECC-------CHHHHHHHHH-HCTHHHHHHH
T ss_pred hhCCEEEecCCHHHHHHHHHhCCCEEecCCc-hhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHH-hCHHHHHHHH
Confidence 9999999999999999999999999999874 45667999999999999886 6789999999999 7999999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHH
Q 012492 419 ENALKLAQPEAVVDIVKDIHD 439 (462)
Q Consensus 419 ~~a~~~~~~~~~~~ia~~i~~ 439 (462)
+.++++....+++++++.+++
T Consensus 377 ~~~~~~~~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 377 RLAAEMATLPTPADIVRLIEQ 397 (398)
T ss_dssp HHHHHHTTSCCHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHhc
Confidence 999999999999999998764
No 21
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.93 E-value=4.9e-25 Score=223.33 Aligned_cols=341 Identities=13% Similarity=0.038 Sum_probs=211.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecccc-----ccCCCchhhHHHHHHHHhhhHHHHHHhhcC
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE-----YAGWPLNDMERSYKFMVKHVQLWKVAFHST 135 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~-----~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 135 (462)
.||||+|++.+. .||..++.+|+++|+++|| +|.+...... ..+..+..++. .+...+...
T Consensus 6 ~m~kIl~~~~~~-~Gh~~p~~~la~~L~~~G~---~V~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~~~ 71 (430)
T 2iyf_A 6 TPAHIAMFSIAA-HGHVNPSLEVIRELVARGH---RVTYAIPPVFADKVAATGPRPVLYHS----------TLPGPDADP 71 (430)
T ss_dssp --CEEEEECCSC-HHHHGGGHHHHHHHHHTTC---EEEEEECGGGHHHHHTTSCEEEECCC----------CSCCTTSCG
T ss_pred ccceEEEEeCCC-CccccchHHHHHHHHHCCC---eEEEEeCHHHHHHHHhCCCEEEEcCC----------cCccccccc
Confidence 367999987666 6999999999999999985 4444421100 00000000000 000000000
Q ss_pred C--cchhhHHHHH--HHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccc---
Q 012492 136 S--PKWIHSCYLA--AMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTW--- 208 (462)
Q Consensus 136 ~--~~~~~~~~~~--~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~--- 208 (462)
. .......... .........+.+++++++||+||+++.... ...+++. .++|+|.+.+... .+..|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~--~~~~A~~----~giP~v~~~~~~~-~~~~~~~~ 144 (430)
T 2iyf_A 72 EAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYP--ARVLARR----WGVPAVSLSPNLV-AWKGYEEE 144 (430)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHH--HHHHHHH----HTCCEEEEESSCC-CCTTHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccHH--HHHHHHH----cCCCEEEEecccc-cccccccc
Confidence 0 0000111100 011234567788899999999999875432 2344554 3899998776542 11111
Q ss_pred -------------------------cc------------CCCcEEEEcCHHHHHHHHHcCCCCCc-EEEcCCCCChhhhc
Q 012492 209 -------------------------FH------------PRVNRCYCPSKEVAKRASYFGLEVSQ-IRVFGLPIRPSFVR 250 (462)
Q Consensus 209 -------------------------~~------------~~~d~~i~~s~~~~~~l~~~gi~~~~-i~v~g~pv~~~~~~ 250 (462)
+. ...+.+++.+....+... ..++ .+ +.++|+++......
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-~~~v~~vG~~~~~~~~~ 222 (430)
T 2iyf_A 145 VAEPMWREPRQTERGRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHA-DRVD-EDVYTFVGACQGDRAEE 222 (430)
T ss_dssp THHHHHHHHHHSHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTG-GGSC-TTTEEECCCCC-----C
T ss_pred cccchhhhhccchHHHHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCc-ccCC-CccEEEeCCcCCCCCCC
Confidence 00 023445555443322111 1222 23 67777544211000
Q ss_pred ccCChHHHHHHcCC-CCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCe
Q 012492 251 AVISKDNLRLELQM-DPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPV 329 (462)
Q Consensus 251 ~~~~~~~~r~~l~l-~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V 329 (462)
..+.. .++.++++++.|+.+ ....+.+..+++.+.+ .+++++++++|.+.. .+.++ .+..+|
T Consensus 223 ---------~~~~~~~~~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~----~~~~~~~~~~G~~~~-~~~l~--~~~~~v 285 (430)
T 2iyf_A 223 ---------GGWQRPAGAEKVVLVSLGSAF-TKQPAFYRECVRAFGN----LPGWHLVLQIGRKVT-PAELG--ELPDNV 285 (430)
T ss_dssp ---------CCCCCCTTCSEEEEEECTTTC-C-CHHHHHHHHHHHTT----CTTEEEEEECC---C-GGGGC--SCCTTE
T ss_pred ---------CCCccccCCCCeEEEEcCCCC-CCcHHHHHHHHHHHhc----CCCeEEEEEeCCCCC-hHHhc--cCCCCe
Confidence 01211 234567888888887 4445666666666643 246778788887642 12232 245789
Q ss_pred EEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHH
Q 012492 330 KVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTE 405 (462)
Q Consensus 330 ~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ 405 (462)
.+.||++++ ++|+.||++|+++|++|++|||++|+|+|++|.. ++|..|++.+.+.|.|+.+. ++++++++|.+
T Consensus 286 ~~~~~~~~~-~~l~~ad~~v~~~G~~t~~Ea~~~G~P~i~~p~~-~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ 363 (430)
T 2iyf_A 286 EVHDWVPQL-AILRQADLFVTHAGAGGSQEGLATATPMIAVPQA-VDQFGNADMLQGLGVARKLATEEATADLLRETALA 363 (430)
T ss_dssp EEESSCCHH-HHHTTCSEEEECCCHHHHHHHHHTTCCEEECCCS-HHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHH
T ss_pred EEEecCCHH-HHhhccCEEEECCCccHHHHHHHhCCCEEECCCc-cchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHH
Confidence 999999888 8999999999999999999999999999999875 45567999999999999886 68999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 406 WFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 406 ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
++ +|++.+++|++.++++...++++++++.|++++++.
T Consensus 364 ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 401 (430)
T 2iyf_A 364 LV-DDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPAR 401 (430)
T ss_dssp HH-HCHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSCC-
T ss_pred HH-cCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcc
Confidence 99 799999999999998887889999999999988654
No 22
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.93 E-value=1.4e-24 Score=223.34 Aligned_cols=265 Identities=13% Similarity=0.092 Sum_probs=183.9
Q ss_pred HhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC------------c-c-----------------ccc
Q 012492 161 MEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH------------P-T-----------------WFH 210 (462)
Q Consensus 161 ~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~------------~-~-----------------~~~ 210 (462)
++.+||+||++.......+..+++... .++|+|...|+..... + . +..
T Consensus 127 ~~~~~DiIh~~~~~~~~~~~~~~~~~~--~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (485)
T 1rzu_A 127 PGWRPDMVHAHDWQAAMTPVYMRYAET--PEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGL 204 (485)
T ss_dssp SSCCCSEEEEEHHHHTTHHHHHHHSSS--CCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHH
T ss_pred cCCCCCEEEecccchhHHHHHHhhccc--CCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHH
Confidence 578999999987544333333333211 4899999888853100 0 0 012
Q ss_pred CCCcEEEEcCHHHHHHHHH--cC--------CCCCcEEEcCCCCChhhhcccCC------------------hHHHHHHc
Q 012492 211 PRVNRCYCPSKEVAKRASY--FG--------LEVSQIRVFGLPIRPSFVRAVIS------------------KDNLRLEL 262 (462)
Q Consensus 211 ~~~d~~i~~s~~~~~~l~~--~g--------i~~~~i~v~g~pv~~~~~~~~~~------------------~~~~r~~l 262 (462)
+.+|.++++|+..++.+.+ .| ++..++.+++|+++...+.+..+ +..+++++
T Consensus 205 ~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 284 (485)
T 1rzu_A 205 QTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHF 284 (485)
T ss_dssp HHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHH
T ss_pred hhcCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhc
Confidence 3579999999999888754 23 35688999999998765544222 46788899
Q ss_pred CCCCC-CcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH----HHHHHhhccCCCCeE-Eeccch
Q 012492 263 QMDPI-LPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT----LASTLQSEEWKIPVK-VRGFET 336 (462)
Q Consensus 263 ~l~~~-~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~----l~~~~~~~~~~~~V~-~~g~~~ 336 (462)
+++++ .++++++|+....+++..+++++ +.+.+ ++++++++++.... +.+..+++ ..+|. +.|+.+
T Consensus 285 ~~~~~~~~~i~~vGrl~~~Kg~~~li~a~-~~l~~-----~~~~l~ivG~g~~~~~~~l~~~~~~~--~~~v~~~~g~~~ 356 (485)
T 1rzu_A 285 RIDDDGSPLFCVISRLTWQKGIDLMAEAV-DEIVS-----LGGRLVVLGAGDVALEGALLAAASRH--HGRVGVAIGYNE 356 (485)
T ss_dssp TCCCSSSCEEEEESCBSTTTTHHHHHTTH-HHHHH-----TTCEEEEEECBCHHHHHHHHHHHHHT--TTTEEEEESCCH
T ss_pred CCCCCCCeEEEEEccCccccCHHHHHHHH-HHHHh-----cCceEEEEeCCchHHHHHHHHHHHhC--CCcEEEecCCCH
Confidence 99875 56555555444445555555544 45543 36776655433322 33333333 36897 789975
Q ss_pred hH-HHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHC----------CceeeeC--CHHHH
Q 012492 337 QM-EKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN----------GAGVFTR--SPKET 399 (462)
Q Consensus 337 ~~-~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~----------G~g~~~~--~~~~l 399 (462)
+. ..+|+.||++|.+|. |++++|||++|+|+|+++.++ ...+++. +.|++++ |++++
T Consensus 357 ~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg------~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~l 430 (485)
T 1rzu_A 357 PLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGG------LADTVIDANHAALASKAATGVQFSPVTLDGL 430 (485)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHH------HHHHCCBCCHHHHHTTCCCBEEESSCSHHHH
T ss_pred HHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCC------hhheecccccccccccCCcceEeCCCCHHHH
Confidence 54 799999999999874 899999999999999998632 2233443 4677765 79999
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 400 ARIVTEWFS--TKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 400 a~~i~~ll~--~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
+++|.+++. +|++.+++|++++++ +.++|+.+++.++++.++
T Consensus 431 a~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~~y~~ 474 (485)
T 1rzu_A 431 KQAIRRTVRYYHDPKLWTQMQKLGMK--SDVSWEKSAGLYAALYSQ 474 (485)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT--CCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HhCChHHHHHHHHHHHHH
Confidence 999999983 489999999999875 789999999999998864
No 23
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.93 E-value=1e-23 Score=217.00 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=188.3
Q ss_pred HHHHHHHH----hhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC--c-----------c---------
Q 012492 154 KEVEAGLM----EYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH--P-----------T--------- 207 (462)
Q Consensus 154 ~~l~~~l~----~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~--~-----------~--------- 207 (462)
+.+.++++ +.+||+||++.......+..++... .++|+|...|+..... + .
T Consensus 115 ~~~~~~~~~~~~~~~~Divh~~~~~~~~~~~~~~~~~---~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
T 2qzs_A 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARG---RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEF 191 (485)
T ss_dssp HHHHHHTTTSSTTCCCSEEEEETGGGTTHHHHHHHTT---CSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEE
T ss_pred HHHHHHHHHhccCCCCCEEEeeccchhHHHHHHhhcc---CCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccc
Confidence 34445555 3899999998865444333333111 4899999888853100 0 0
Q ss_pred --------cccCCCcEEEEcCHHHHHHHHH--cCCC--------C--CcEEEcCCCCChhhhcccCC-------------
Q 012492 208 --------WFHPRVNRCYCPSKEVAKRASY--FGLE--------V--SQIRVFGLPIRPSFVRAVIS------------- 254 (462)
Q Consensus 208 --------~~~~~~d~~i~~s~~~~~~l~~--~gi~--------~--~~i~v~g~pv~~~~~~~~~~------------- 254 (462)
+..+.+|.++++|+..++.+.+ .|++ + .++.+++|+++...+.+..+
T Consensus 192 ~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~ 271 (485)
T 2qzs_A 192 NGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLE 271 (485)
T ss_dssp TTEEEHHHHHHHHCSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGG
T ss_pred cccccHHHHHHHhcCeEEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchh
Confidence 0124579999999999888754 2432 2 68999999998765554221
Q ss_pred -----hHHHHHHcCCCC--CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH----HHHHHhhc
Q 012492 255 -----KDNLRLELQMDP--ILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT----LASTLQSE 323 (462)
Q Consensus 255 -----~~~~r~~l~l~~--~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~----l~~~~~~~ 323 (462)
+..+++++++++ +.++++++|+....++...+++++ +.+.+ ++++++++++.... +.+..+++
T Consensus 272 ~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~-~~l~~-----~~~~l~ivG~g~~~~~~~l~~~~~~~ 345 (485)
T 2qzs_A 272 DKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEAL-PGLLE-----QGGQLALLGAGDPVLQEGFLAAAAEY 345 (485)
T ss_dssp GGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHH-HHHHH-----TTCEEEEEEEECHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHH-HHHhh-----CCcEEEEEeCCchHHHHHHHHHHHhC
Confidence 467888999976 567676666555556666666555 45543 36776655433322 33333433
Q ss_pred cCCCCeE-Eeccchh-HHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHC----------
Q 012492 324 EWKIPVK-VRGFETQ-MEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN---------- 387 (462)
Q Consensus 324 ~~~~~V~-~~g~~~~-~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~---------- 387 (462)
..+|. +.|+.++ +..+|+.||++|.+|. |++++|||++|+|+|+++.+ ....++..
T Consensus 346 --~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~g------g~~e~v~~~~~~~~~~~~ 417 (485)
T 2qzs_A 346 --PGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTG------GLADTVSDCSLENLADGV 417 (485)
T ss_dssp --TTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSH------HHHHHCCBCCHHHHHTTC
T ss_pred --CCcEEEeCCCCHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCC------CccceeccCccccccccc
Confidence 36886 8899754 4899999999999874 89999999999999999863 22234444
Q ss_pred CceeeeC--CHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 388 GAGVFTR--SPKETARIVTEWFS--TKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 388 G~g~~~~--~~~~la~~i~~ll~--~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
+.|++++ ++++++++|.+++. +|++.+++|++++++ +.++|+.+++.++++.++
T Consensus 418 ~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~ly~~ 475 (485)
T 2qzs_A 418 ASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYRELYYR 475 (485)
T ss_dssp CCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHH
T ss_pred cceEEECCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHH
Confidence 4677765 79999999999983 489999999999875 789999999999998864
No 24
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.93 E-value=1.3e-24 Score=218.00 Aligned_cols=347 Identities=14% Similarity=0.116 Sum_probs=204.0
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecccc-----ccCCCchh------hHHHHHHHHhhhHHH
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE-----YAGWPLND------MERSYKFMVKHVQLW 128 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~-----~~~~~~~~------~~~~y~~~~~~~~l~ 128 (462)
+++|||+|++.+. .||..++.+|+++|+++|| +|.+... .. ..+..... ....+.......+.+
T Consensus 18 ~~~MrIl~~~~~~-~Ghv~~~~~La~~L~~~Gh---eV~v~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (398)
T 3oti_A 18 GRHMRVLFVSSPG-IGHLFPLIQLAWGFRTAGH---DVLIAVA-EHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRF 92 (398)
T ss_dssp -CCCEEEEECCSS-HHHHGGGHHHHHHHHHTTC---EEEEEES-SCHHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHH
T ss_pred hhcCEEEEEcCCC-cchHhHHHHHHHHHHHCCC---EEEEecc-chHHHHHhCCCeeEecCCccCHHHHhhhcccCCccc
Confidence 4668999999875 7999999999999999986 4444432 11 01111110 011111000000000
Q ss_pred HHHh--hcC-CcchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC
Q 012492 129 KVAF--HST-SPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH 205 (462)
Q Consensus 129 ~~~~--~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~ 205 (462)
.... ... ........+.. ........+.+++++++||+||++...... ..+++. .++|+|.+.+++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~--~~aA~~----~giP~v~~~~~~~~~~ 165 (398)
T 3oti_A 93 AETVATRPAIDLEEWGVQIAA-VNRPLVDGTMALVDDYRPDLVVYEQGATVG--LLAADR----AGVPAVQRNQSAWRTR 165 (398)
T ss_dssp HHTGGGSCCCSGGGGHHHHHH-HHGGGHHHHHHHHHHHCCSEEEEETTCHHH--HHHHHH----HTCCEEEECCTTCCCT
T ss_pred cccccCChhhhHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCEEEECchhhHH--HHHHHH----cCCCEEEEeccCCCcc
Confidence 0000 000 00111111111 122345678889999999999987444332 244454 3899998776643110
Q ss_pred c------cccc----------CCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCc
Q 012492 206 P------TWFH----------PRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILP 269 (462)
Q Consensus 206 ~------~~~~----------~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~ 269 (462)
. .|+. ...+..+...+....... ......+.+++. + .+......+..+++.+
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~ 233 (398)
T 3oti_A 166 GMHRSIASFLTDLMDKHQVSLPEPVATIESFPPSLLLEA--EPEGWFMRWVPY---------G-GGAVLGDRLPPVPARP 233 (398)
T ss_dssp THHHHHHTTCHHHHHHTTCCCCCCSEEECSSCGGGGTTS--CCCSBCCCCCCC---------C-CCEECCSSCCCCCSSC
T ss_pred chhhHHHHHHHHHHHHcCCCCCCCCeEEEeCCHHHCCCC--CCCCCCccccCC---------C-CCcCCchhhhcCCCCC
Confidence 0 0100 001222222221110000 000000111100 0 0001111122245677
Q ss_pred EEEEEeCCCCCc-cHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhcchh
Q 012492 270 AVLLMGGGEGMG-PVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCI 348 (462)
Q Consensus 270 ~iLv~gG~~~~~-~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~v 348 (462)
+|++++|+.... +..+.+..+++.+.+ .++++++++|... .+.++ ....||.+.||+ ++.++|+.||++
T Consensus 234 ~v~v~~G~~~~~~~~~~~~~~~~~~l~~-----~~~~~v~~~g~~~--~~~l~--~~~~~v~~~~~~-~~~~ll~~ad~~ 303 (398)
T 3oti_A 234 EVAITMGTIELQAFGIGAVEPIIAAAGE-----VDADFVLALGDLD--ISPLG--TLPRNVRAVGWT-PLHTLLRTCTAV 303 (398)
T ss_dssp EEEECCTTTHHHHHCGGGHHHHHHHHHT-----SSSEEEEECTTSC--CGGGC--SCCTTEEEESSC-CHHHHHTTCSEE
T ss_pred EEEEEcCCCccccCcHHHHHHHHHHHHc-----CCCEEEEEECCcC--hhhhc--cCCCcEEEEccC-CHHHHHhhCCEE
Confidence 899988887432 122233344444443 2568888887653 12232 346799999999 799999999999
Q ss_pred eecCChhhHHHHHHhCCCEEEecCCCCccccch--HHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 012492 349 ITKAGPGTIAEALIRGLPIILNDYIPGQEKGNV--PYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQ 426 (462)
Q Consensus 349 V~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~--~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~ 426 (462)
|+++|++|++||+++|+|+|+.|... +|..|+ +.+.+.|+|+.++..+...+.+.+++ +|++.+++|++.++++..
T Consensus 304 v~~~G~~t~~Eal~~G~P~v~~p~~~-dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~~ 381 (398)
T 3oti_A 304 VHHGGGGTVMTAIDAGIPQLLAPDPR-DQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLI-GDESLRTAAREVREEMVA 381 (398)
T ss_dssp EECCCHHHHHHHHHHTCCEEECCCTT-CCSSCTTHHHHHHHTSEEECCGGGCCHHHHHHHH-HCHHHHHHHHHHHHHHHT
T ss_pred EECCCHHHHHHHHHhCCCEEEcCCCc-hhHHHHHHHHHHHCCCEEeeCCCCCCHHHHHHHH-cCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998744 456799 99999999999875544556666889 799999999999999999
Q ss_pred CcHHHHHHHHHHHHHh
Q 012492 427 PEAVVDIVKDIHDLAA 442 (462)
Q Consensus 427 ~~~~~~ia~~i~~l~~ 442 (462)
..+++++++.|++++.
T Consensus 382 ~~~~~~~~~~l~~l~~ 397 (398)
T 3oti_A 382 LPTPAETVRRIVERIS 397 (398)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999998864
No 25
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.92 E-value=1.4e-24 Score=217.10 Aligned_cols=351 Identities=11% Similarity=0.047 Sum_probs=204.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecccc-----ccCCCchhh-HHH--HHHHHhh-hHHHHHHhh
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE-----YAGWPLNDM-ERS--YKFMVKH-VQLWKVAFH 133 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~-----~~~~~~~~~-~~~--y~~~~~~-~~l~~~~~~ 133 (462)
|||+|++.+. .||..++..|+++|+++|| +|.+...... ..+.....+ ... +...... .+.......
T Consensus 2 MrIl~~~~~~-~gh~~~~~~la~~L~~~Gh---eV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (391)
T 3tsa_A 2 MRVLVVPLPY-PTHLMAMVPLCWALQASGH---EVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFG 77 (391)
T ss_dssp CEEEEECCSC-HHHHHTTHHHHHHHHHTTC---EEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGG
T ss_pred cEEEEEcCCC-cchhhhHHHHHHHHHHCCC---EEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhcccccccccc
Confidence 7999999885 7999999999999999986 4443321000 011111110 000 0000000 000000000
Q ss_pred cCCcchhhHHHHHHHHHHH-------HHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCc
Q 012492 134 STSPKWIHSCYLAAMAAYY-------AKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHP 206 (462)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~-------~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~ 206 (462)
..........+.. ..... ...+.+++++++||+||+++..... ..+++. .++|+|.+.++......
T Consensus 78 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~--~~aa~~----~giP~v~~~~~~~~~~~ 150 (391)
T 3tsa_A 78 QRDTEAGRQLWEQ-TASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIG--RVLGGL----LDLPVVLHRWGVDPTAG 150 (391)
T ss_dssp CTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHH--HHHHHH----TTCCEEEECCSCCCTTT
T ss_pred cccchhHHHHHHH-HHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHH--HHHHHH----hCCCEEEEecCCccccc
Confidence 0000011111111 11233 6678899999999999998633322 344554 48999988776532111
Q ss_pred ccccCCCcEEEEcCHHHHHHHHHcCCCCC---c--EEEcCCCCCh---------hhhcccCChHHHHHHcCCCCCCcEEE
Q 012492 207 TWFHPRVNRCYCPSKEVAKRASYFGLEVS---Q--IRVFGLPIRP---------SFVRAVISKDNLRLELQMDPILPAVL 272 (462)
Q Consensus 207 ~~~~~~~d~~i~~s~~~~~~l~~~gi~~~---~--i~v~g~pv~~---------~~~~~~~~~~~~r~~l~l~~~~~~iL 272 (462)
.+ .. .........+.+++++.. . +..++..+.. .|... .........+..+++.+.|+
T Consensus 151 ~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~vl 222 (391)
T 3tsa_A 151 PF-SD------RAHELLDPVCRHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPY-NGSGAFPAWGAARTSARRVC 222 (391)
T ss_dssp HH-HH------HHHHHHHHHHHHTTSSSSCCCSEEEECSCGGGSCTTSCCCEECCCCCC-CCCEECCGGGSSCCSSEEEE
T ss_pred cc-cc------hHHHHHHHHHHHcCCCCCCCCceEEEecChhhcCCCCCccCCeeeecC-CCCcCCCchhhcCCCCCEEE
Confidence 00 00 000011111122232210 1 1111111000 00000 00001111222335667889
Q ss_pred EEeCCCCC-ccH-HHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhcchhee
Q 012492 273 LMGGGEGM-GPV-KETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIIT 350 (462)
Q Consensus 273 v~gG~~~~-~~~-~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~ 350 (462)
+++|+... ++. .+++..+++. .+ .|++++++++|... .+.++ +...|+++.||.+ +.++|+.||++|+
T Consensus 223 v~~G~~~~~~~~~~~~~~~~~~~-~~----~p~~~~v~~~~~~~--~~~l~--~~~~~v~~~~~~~-~~~ll~~ad~~v~ 292 (391)
T 3tsa_A 223 ICMGRMVLNATGPAPLLRAVAAA-TE----LPGVEAVIAVPPEH--RALLT--DLPDNARIAESVP-LNLFLRTCELVIC 292 (391)
T ss_dssp EECCHHHHHHHCSHHHHHHHHHH-HT----STTEEEEEECCGGG--GGGCT--TCCTTEEECCSCC-GGGTGGGCSEEEE
T ss_pred EEcCCCCCcccchHHHHHHHHHh-cc----CCCeEEEEEECCcc--hhhcc--cCCCCEEEeccCC-HHHHHhhCCEEEe
Confidence 98888753 233 5556666554 32 46788887777653 22222 3467999999985 5678899999999
Q ss_pred cCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCC------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 012492 351 KAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRS------PKETARIVTEWFSTKTDELKRMSENALKL 424 (462)
Q Consensus 351 ~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~------~~~la~~i~~ll~~d~~~~~~m~~~a~~~ 424 (462)
++|++|++||+++|+|+|+.|... +|..|+..+.+.|+|..+.. ++.+++++.+++ +|++.+++|++.++++
T Consensus 293 ~~G~~t~~Ea~~~G~P~v~~p~~~-~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~ 370 (391)
T 3tsa_A 293 AGGSGTAFTATRLGIPQLVLPQYF-DQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVL-GDTGFAAAAIKLSDEI 370 (391)
T ss_dssp CCCHHHHHHHHHTTCCEEECCCST-THHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHH-TCTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCEEecCCcc-cHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHH-cCHHHHHHHHHHHHHH
Confidence 999999999999999999998744 45679999999999998865 889999999999 7999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHhcc
Q 012492 425 AQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 425 ~~~~~~~~ia~~i~~l~~~~ 444 (462)
....+++++++.|++++.++
T Consensus 371 ~~~~~~~~~~~~i~~~~~~~ 390 (391)
T 3tsa_A 371 TAMPHPAALVRTLENTAAIR 390 (391)
T ss_dssp HTSCCHHHHHHHHHHC----
T ss_pred HcCCCHHHHHHHHHHHHhcc
Confidence 99999999999999887653
No 26
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.91 E-value=1e-22 Score=206.04 Aligned_cols=166 Identities=16% Similarity=0.159 Sum_probs=135.4
Q ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhc
Q 012492 266 PILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGAC 345 (462)
Q Consensus 266 ~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~a 345 (462)
+++++|++++|+.+. ...+.+..+++.+.+ .++++++++|.+... +.++ .+..++.+.+|++++ ++|+.|
T Consensus 253 ~~~~~v~v~~Gs~~~-~~~~~~~~~~~al~~-----~~~~~~~~~g~~~~~-~~~~--~~~~~v~~~~~~~~~-~~l~~~ 322 (424)
T 2iya_A 253 DGRPVLLIALGSAFT-DHLDFYRTCLSAVDG-----LDWHVVLSVGRFVDP-ADLG--EVPPNVEVHQWVPQL-DILTKA 322 (424)
T ss_dssp SSCCEEEEECCSSSC-CCHHHHHHHHHHHTT-----CSSEEEEECCTTSCG-GGGC--SCCTTEEEESSCCHH-HHHTTC
T ss_pred CCCCEEEEEcCCCCc-chHHHHHHHHHHHhc-----CCcEEEEEECCcCCh-HHhc--cCCCCeEEecCCCHH-HHHhhC
Confidence 356788999888873 334555566666643 457888888875321 1222 245789999999887 899999
Q ss_pred chheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012492 346 DCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMSENA 421 (462)
Q Consensus 346 D~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~~~a 421 (462)
|++|+++|++|++||+++|+|+|+.|...+ |..|++.+++.|+|+.+. ++++++++|.+++ +|++.++++++.+
T Consensus 323 d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~ 400 (424)
T 2iya_A 323 SAFITHAGMGSTMEALSNAVPMVAVPQIAE-QTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVA-SDPGVAERLAAVR 400 (424)
T ss_dssp SEEEECCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred CEEEECCchhHHHHHHHcCCCEEEecCccc-hHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHH-cCHHHHHHHHHHH
Confidence 999999999999999999999999998644 567999999999998886 7899999999999 7999999999999
Q ss_pred HhhcCCcHHHHHHHHHHHHHhc
Q 012492 422 LKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 422 ~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
++.....+.+++++.|++++.+
T Consensus 401 ~~~~~~~~~~~~~~~i~~~~~~ 422 (424)
T 2iya_A 401 QEIREAGGARAAADILEGILAE 422 (424)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHhc
Confidence 8888889999999999998764
No 27
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.91 E-value=1.3e-22 Score=202.46 Aligned_cols=165 Identities=19% Similarity=0.192 Sum_probs=129.0
Q ss_pred CCCcEEEEEeCCCCCc---c-HHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHH
Q 012492 266 PILPAVLLMGGGEGMG---P-VKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKW 341 (462)
Q Consensus 266 ~~~~~iLv~gG~~~~~---~-~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l 341 (462)
++++++++++|+.+.. + ..+.+..+++.+.+ .++++++++|.+. .+.++. ...+|.+ ||.+ +.++
T Consensus 208 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~-----~~~~~~~~~g~~~--~~~l~~--~~~~v~~-~~~~-~~~~ 276 (384)
T 2p6p_A 208 DTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR-----WDVELIVAAPDTV--AEALRA--EVPQARV-GWTP-LDVV 276 (384)
T ss_dssp CSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT-----TTCEEEEECCHHH--HHHHHH--HCTTSEE-ECCC-HHHH
T ss_pred CCCCEEEEECCCCCccccccccHHHHHHHHHHHhc-----CCcEEEEEeCCCC--HHhhCC--CCCceEE-cCCC-HHHH
Confidence 3457788988887753 1 11222233333332 2467887777532 233332 3568999 9995 6899
Q ss_pred HHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHH
Q 012492 342 MGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRM 417 (462)
Q Consensus 342 ~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m 417 (462)
|+.||++|+++|++|++||+++|+|+|++|... .|..|++.+.+.|+|+.++ ++++++++|.+++ +|++.+++|
T Consensus 277 l~~~d~~v~~~G~~t~~Ea~~~G~P~v~~p~~~-dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~~ 354 (384)
T 2p6p_A 277 APTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGS-VLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQ-AKDTYARRA 354 (384)
T ss_dssp GGGCSEEEECSCTTHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HhhCCEEEeCCcHHHHHHHHHhCCCEEEccCcc-cchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHH-cCHHHHHHH
Confidence 999999999999999999999999999999744 4467999999999998876 6889999999999 799999999
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 418 SENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 418 ~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
++.++++....+.+++++.|+++++.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~i~~~~~~ 380 (384)
T 2p6p_A 355 QDLSREISGMPLPATVVTALEQLAHH 380 (384)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999864
No 28
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.91 E-value=7e-24 Score=211.13 Aligned_cols=273 Identities=15% Similarity=0.098 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC---c-----ccccCCCcEEEEcCHH
Q 012492 151 YYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH---P-----TWFHPRVNRCYCPSKE 222 (462)
Q Consensus 151 ~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~---~-----~~~~~~~d~~i~~s~~ 222 (462)
....++.+++++++||+|++++......+..+++. .+||++.+........ + .+..+.+|.++++++.
T Consensus 81 ~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~----~~IPv~h~eaglrs~~~~~pee~nR~~~~~~a~~~~~~te~ 156 (385)
T 4hwg_A 81 LVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKR----RKIPIFHMEAGNRCFDQRVPEEINRKIIDHISDVNITLTEH 156 (385)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHH----TTCCEEEESCCCCCSCTTSTHHHHHHHHHHHCSEEEESSHH
T ss_pred HHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHH----hCCCEEEEeCCCccccccCcHHHHHHHHHhhhceeecCCHH
Confidence 34567888999999999999886544433445554 4899876655432111 1 1223567899999999
Q ss_pred HHHHHHHcCCCCCcEEEcCCCCChhhhcc--cCChHHHHHHcCCCCCCcEEEEEeCCCCC----ccHHHHHHHHHHhhhc
Q 012492 223 VAKRASYFGLEVSQIRVFGLPIRPSFVRA--VISKDNLRLELQMDPILPAVLLMGGGEGM----GPVKETAMALGESLLD 296 (462)
Q Consensus 223 ~~~~l~~~gi~~~~i~v~g~pv~~~~~~~--~~~~~~~r~~l~l~~~~~~iLv~gG~~~~----~~~~~~l~~l~~~l~~ 296 (462)
.++.+.+.|+++++|.++|||+.+.+... ..+++++++++|+++ ++++|+++++... +.+..++.++ +.+.+
T Consensus 157 ~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~-~~~iLvt~hr~e~~~~~~~l~~ll~al-~~l~~ 234 (385)
T 4hwg_A 157 ARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTP-KQYFLISSHREENVDVKNNLKELLNSL-QMLIK 234 (385)
T ss_dssp HHHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCT-TSEEEEEECCC-----CHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCc-CCEEEEEeCCchhcCcHHHHHHHHHHH-HHHHh
Confidence 99999999999999999999976654321 123456788899976 5678888876432 2234444444 34432
Q ss_pred ccCCCCCceEEEEccCCHHHHHHHhhc-c-C--CCCeEEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEe
Q 012492 297 KETGRPIGQLIIICGRNRTLASTLQSE-E-W--KIPVKVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILN 370 (462)
Q Consensus 297 ~~~~~~~~~~lvv~G~~~~l~~~~~~~-~-~--~~~V~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~ 370 (462)
. + ++++++..+ +.+++.++++ + . ..+|.+.+.. .++..+|+.||++|++||+ +..||+++|+|+|+.
T Consensus 235 ~---~-~~~vv~p~~--p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~SGg-v~~EA~alG~Pvv~~ 307 (385)
T 4hwg_A 235 E---Y-NFLIIFSTH--PRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDSGT-ITEEASILNLPALNI 307 (385)
T ss_dssp H---H-CCEEEEEEC--HHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECCTT-HHHHHHHTTCCEEEC
T ss_pred c---C-CeEEEEECC--hHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECCcc-HHHHHHHcCCCEEEc
Confidence 1 1 456665555 3466666665 3 2 3689887654 3789999999999999987 469999999999998
Q ss_pred cCCCCccccchHHHHHCCceeeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcHHHHHHHHHHHHHh
Q 012492 371 DYIPGQEKGNVPYVVDNGAGVFTR-SPKETARIVTEWFSTKTDELKRMSENALKL-AQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 371 ~~~~~~~~~n~~~l~~~G~g~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~~-~~~~~~~~ia~~i~~l~~ 442 (462)
+...+.++ .++.|.++.+. +++++.+++.+++ +|++.+++|++++..+ .+..++++|++.|.+++.
T Consensus 308 ~~~ter~e-----~v~~G~~~lv~~d~~~i~~ai~~ll-~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~~~~ 375 (385)
T 4hwg_A 308 REAHERPE-----GMDAGTLIMSGFKAERVLQAVKTIT-EEHDNNKRTQGLVPDYNEAGLVSKKILRIVLSYVD 375 (385)
T ss_dssp SSSCSCTH-----HHHHTCCEECCSSHHHHHHHHHHHH-TTCBTTBCCSCCCHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCccchh-----hhhcCceEEcCCCHHHHHHHHHHHH-hChHHHHHhhccCCCCCCCChHHHHHHHHHHHHhh
Confidence 76443222 46678888885 8999999999999 7888888888878889 999999999999998764
No 29
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.91 E-value=1.3e-22 Score=203.34 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=128.8
Q ss_pred cCCCCCCcEEEEEeCCCCCc-cHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHH
Q 012492 262 LQMDPILPAVLLMGGGEGMG-PVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEK 340 (462)
Q Consensus 262 l~l~~~~~~iLv~gG~~~~~-~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~ 340 (462)
+...+++++|++++|+.+.. ...+.+..+++.+.+ .+.++++..|.... .. ...+.+|+.+.+|.+ +.+
T Consensus 231 l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~-----~~~~~v~~~~~~~~--~~--~~~~~~~v~~~~~~p-~~~ 300 (400)
T 4amg_A 231 LPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEVAD-----VDAEFVLTLGGGDL--AL--LGELPANVRVVEWIP-LGA 300 (400)
T ss_dssp CSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHGGG-----SSSEEEEECCTTCC--CC--CCCCCTTEEEECCCC-HHH
T ss_pred ccccCCCcEEEEeCCcccccCccHHHHHHHHHHhhc-----cCceEEEEecCccc--cc--cccCCCCEEEEeecC-HHH
Confidence 33455678899988887642 222334444455543 34567776665431 11 113567999999995 678
Q ss_pred HHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012492 341 WMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSEN 420 (462)
Q Consensus 341 l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~ 420 (462)
+|..||+||+++|.+|++||+++|+|+|+.|...+ |..|++.+++.|+|+.+++.+.++++|.++| +|++.|+++++.
T Consensus 301 lL~~~~~~v~h~G~~s~~Eal~~GvP~v~~P~~~d-Q~~na~~v~~~G~g~~l~~~~~~~~al~~lL-~d~~~r~~a~~l 378 (400)
T 4amg_A 301 LLETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSY-QDTNRDVLTGLGIGFDAEAGSLGAEQCRRLL-DDAGLREAALRV 378 (400)
T ss_dssp HHTTCSEEEECCCHHHHHHHHHHTCCEEECCC----CHHHHHHHHHHTSEEECCTTTCSHHHHHHHH-HCHHHHHHHHHH
T ss_pred HhhhhhheeccCCccHHHHHHHhCCCEEEecCccc-HHHHHHHHHHCCCEEEcCCCCchHHHHHHHH-cCHHHHHHHHHH
Confidence 99999999999999999999999999999998554 5669999999999999998888899999999 799999999998
Q ss_pred HHhhcCCcHHHHHHHHHHHHH
Q 012492 421 ALKLAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 421 a~~~~~~~~~~~ia~~i~~l~ 441 (462)
++++....+..++++.|++++
T Consensus 379 ~~~~~~~~~~~~~a~~le~lA 399 (400)
T 4amg_A 379 RQEMSEMPPPAETAAXLVALA 399 (400)
T ss_dssp HHHHHTSCCHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHhh
Confidence 888888888999999999874
No 30
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.90 E-value=9.9e-24 Score=226.42 Aligned_cols=267 Identities=11% Similarity=0.105 Sum_probs=182.4
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC---Cc--c------------------cccCCCcEEEEc
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC---HP--T------------------WFHPRVNRCYCP 219 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~---~~--~------------------~~~~~~d~~i~~ 219 (462)
.+|||||++.......+..+++. .++|+|...|+.... .. . +..+.+|.+++.
T Consensus 406 ~~PDVIHsH~~~sglva~llar~----~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~ 481 (816)
T 3s28_A 406 GKPDLIIGNYSDGNLVASLLAHK----LGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITS 481 (816)
T ss_dssp SCCSEEEEEHHHHHHHHHHHHHH----HTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEES
T ss_pred CCCeEEEeCCchHHHHHHHHHHH----cCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEEC
Confidence 37999999765444333344444 389999888765310 00 0 134568999999
Q ss_pred CHHHHHHHHH----c------------------CCCCCcEEEcCCCCChhhhcccCChH------------------HHH
Q 012492 220 SKEVAKRASY----F------------------GLEVSQIRVFGLPIRPSFVRAVISKD------------------NLR 259 (462)
Q Consensus 220 s~~~~~~l~~----~------------------gi~~~~i~v~g~pv~~~~~~~~~~~~------------------~~r 259 (462)
|+..++.+.+ + +....++.+++|+++...+.+..... ..+
T Consensus 482 S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r 561 (816)
T 3s28_A 482 TFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENK 561 (816)
T ss_dssp CHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBT
T ss_pred CHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHH
Confidence 9988764211 0 11223899999999987655422111 123
Q ss_pred HHcCC--CCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCC-------------HHHHHHHhhcc
Q 012492 260 LELQM--DPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRN-------------RTLASTLQSEE 324 (462)
Q Consensus 260 ~~l~l--~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~-------------~~l~~~~~~~~ 324 (462)
+.+|+ +++.++|+++|+....|++..+++++ ..+.+. .++++++++++.. .++.+.+++++
T Consensus 562 ~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~-~~L~~~---~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lg 637 (816)
T 3s28_A 562 EHLCVLKDKKKPILFTMARLDRVKNLSGLVEWY-GKNTRL---RELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYK 637 (816)
T ss_dssp TEESCBSCTTSCEEEEECCCCTTTTHHHHHHHH-HHCHHH---HHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHhcccCCCCCeEEEEEccCcccCCHHHHHHHH-HHHHhh---CCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcC
Confidence 44566 56677777776655556666666655 445432 3567776665444 12456667778
Q ss_pred CCCCeEEeccc------hhHHHHHH-hcchheecC----ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeee
Q 012492 325 WKIPVKVRGFE------TQMEKWMG-ACDCIITKA----GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFT 393 (462)
Q Consensus 325 ~~~~V~~~g~~------~~~~~l~~-~aD~vV~~s----g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~ 393 (462)
+.++|.|.|++ +++..+|+ +||++|.+| .|.+++|||+||+|+|+++.++. .+.+.+.+.|+++
T Consensus 638 L~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~-----~EiV~dg~~Gllv 712 (816)
T 3s28_A 638 LNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGP-----AEIIVHGKSGFHI 712 (816)
T ss_dssp CBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTH-----HHHCCBTTTBEEE
T ss_pred CCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCCh-----HHHHccCCcEEEe
Confidence 88999999964 46778888 689999887 38999999999999999986432 2223334467777
Q ss_pred C--CHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHh
Q 012492 394 R--SPKETARIVTEWFS---TKTDELKRMSENALKLA-QPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 394 ~--~~~~la~~i~~ll~---~d~~~~~~m~~~a~~~~-~~~~~~~ia~~i~~l~~ 442 (462)
+ |+++++++|.+++. .|++.+++|++++++.+ +.++|+.+++.+.++.+
T Consensus 713 ~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~ 767 (816)
T 3s28_A 713 DPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTG 767 (816)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5 78999999965541 58999999999999988 78999999999998765
No 31
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.90 E-value=1.4e-22 Score=198.70 Aligned_cols=295 Identities=14% Similarity=0.082 Sum_probs=195.4
Q ss_pred CCCeEEEEecC---------------CCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhh
Q 012492 61 RTKNVLILMSD---------------TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHV 125 (462)
Q Consensus 61 ~~~kIli~~~~---------------~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~ 125 (462)
+||||++++.. .++|....+..++++|.++|+ +|.+...... ...... .
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~---~v~v~~~~~~--~~~~~~-----------~ 65 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGH---EVFLLGAPGS--PAGRPG-----------L 65 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTC---EEEEESCTTS--CCCSTT-----------E
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCC---eEEEEecCCC--CCCCCc-----------c
Confidence 36899999876 346999999999999999875 5555432111 100000 0
Q ss_pred HHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCC
Q 012492 126 QLWKVAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCH 205 (462)
Q Consensus 126 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~ 205 (462)
..+ .. .. ...+.+++++.+||+|+++++..... +++ ..++| |...|+... .
T Consensus 66 ~~~-----~~--~~-------------~~~l~~~l~~~~~Dvi~~~~~~~~~~---~~~----~~~~p-v~~~h~~~~-~ 116 (342)
T 2iuy_A 66 TVV-----PA--GE-------------PEEIERWLRTADVDVVHDHSGGVIGP---AGL----PPGTA-FISSHHFTT-R 116 (342)
T ss_dssp EEC-----SC--CS-------------HHHHHHHHHHCCCSEEEECSSSSSCS---TTC----CTTCE-EEEEECSSS-B
T ss_pred eec-----cC--Cc-------------HHHHHHHHHhcCCCEEEECCchhhHH---HHh----hcCCC-EEEecCCCC-C
Confidence 000 00 00 01456778899999999998764432 222 14889 888887642 2
Q ss_pred cccccCCCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHH
Q 012492 206 PTWFHPRVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKE 285 (462)
Q Consensus 206 ~~~~~~~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~ 285 (462)
...+|.++++|+..++.+.+ ..++.+++|+++...+.+.. . .. ++.++++++|+....++...
T Consensus 117 ----~~~~d~ii~~S~~~~~~~~~----~~~~~vi~ngvd~~~~~~~~-~-------~~-~~~~~i~~vG~~~~~Kg~~~ 179 (342)
T 2iuy_A 117 ----PVNPVGCTYSSRAQRAHCGG----GDDAPVIPIPVDPARYRSAA-D-------QV-AKEDFLLFMGRVSPHKGALE 179 (342)
T ss_dssp ----CSCCTTEEESCHHHHHHTTC----CTTSCBCCCCBCGGGSCCST-T-------CC-CCCSCEEEESCCCGGGTHHH
T ss_pred ----cccceEEEEcCHHHHHHHhc----CCceEEEcCCCChhhcCccc-c-------cC-CCCCEEEEEeccccccCHHH
Confidence 12389999999999887754 56789999999877654311 1 12 24455666655444455555
Q ss_pred HHHHHHHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccch--hHHHHHHhcchheecCC-------
Q 012492 286 TAMALGESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFET--QMEKWMGACDCIITKAG------- 353 (462)
Q Consensus 286 ~l~~l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~~--~~~~l~~~aD~vV~~sg------- 353 (462)
+++++ +.+ ++++++ +|.+. .+.+..++++ ++|+|.|+++ ++.++|+.||++|.+|.
T Consensus 180 li~a~-~~~--------~~~l~i-~G~g~~~~~l~~~~~~~~--~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~ 247 (342)
T 2iuy_A 180 AAAFA-HAC--------GRRLVL-AGPAWEPEYFDEITRRYG--STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWG 247 (342)
T ss_dssp HHHHH-HHH--------TCCEEE-ESCCCCHHHHHHHHHHHT--TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTC
T ss_pred HHHHH-Hhc--------CcEEEE-EeCcccHHHHHHHHHHhC--CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccc
Confidence 55544 443 355554 45543 2444444444 7999999995 56999999999997654
Q ss_pred -------hhhHHHHHHhCCCEEEecCCCCccccchHHHHH--CCceeeeC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012492 354 -------PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD--NGAGVFTR-SPKETARIVTEWFSTKTDELKRMSENALK 423 (462)
Q Consensus 354 -------~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~--~G~g~~~~-~~~~la~~i~~ll~~d~~~~~~m~~~a~~ 423 (462)
|++++|||++|+|+|+++.++ ..+.+.+ .+.|++++ ++++++++|.+++ + ++++++
T Consensus 248 ~~~~E~~~~~~~EAma~G~PvI~s~~~~-----~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~-~--------~~~~~~ 313 (342)
T 2iuy_A 248 GIWCEPGATVVSEAAVSGTPVVGTGNGC-----LAEIVPSVGEVVGYGTDFAPDEARRTLAGLP-A--------SDEVRR 313 (342)
T ss_dssp SCCCCCCCHHHHHHHHTTCCEEECCTTT-----HHHHGGGGEEECCSSSCCCHHHHHHHHHTSC-C--------HHHHHH
T ss_pred cccccCccHHHHHHHhcCCCEEEcCCCC-----hHHHhcccCCCceEEcCCCHHHHHHHHHHHH-H--------HHHHHH
Confidence 789999999999999998642 2233333 34677776 8999999999998 4 445555
Q ss_pred hc-CCcHHHHHHHHHHHHHhc
Q 012492 424 LA-QPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 424 ~~-~~~~~~~ia~~i~~l~~~ 443 (462)
.+ +.++++++++.+.+++++
T Consensus 314 ~~~~~~s~~~~~~~~~~~~~~ 334 (342)
T 2iuy_A 314 AAVRLWGHVTIAERYVEQYRR 334 (342)
T ss_dssp HHHHHHBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 55 567888888888887764
No 32
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.90 E-value=2.2e-22 Score=204.67 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=128.2
Q ss_pred cCCCCCCcEEEEEeCCCCCc--cHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHH
Q 012492 262 LQMDPILPAVLLMGGGEGMG--PVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQME 339 (462)
Q Consensus 262 l~l~~~~~~iLv~gG~~~~~--~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~ 339 (462)
+...+++++|++++|+.+.. ...+.+..+++.+.+ .++++++++|... . +.++ ....||.+.+|+++ .
T Consensus 261 l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~-----~~~~~v~~~g~~~-~-~~l~--~~~~~v~~~~~~~~-~ 330 (441)
T 2yjn_A 261 LHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGD-----VDAEIIATFDAQQ-L-EGVA--NIPDNVRTVGFVPM-H 330 (441)
T ss_dssp GSSCCSSCEEEEEC----------CCSTTTTHHHHHT-----SSSEEEECCCTTT-T-SSCS--SCCSSEEECCSCCH-H
T ss_pred hhcCCCCCEEEEECCCCcccccChHHHHHHHHHHHHc-----CCCEEEEEECCcc-h-hhhc--cCCCCEEEecCCCH-H
Confidence 33335567899999988753 112222233333332 2467777777542 1 1122 34578999999976 7
Q ss_pred HHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHH
Q 012492 340 KWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELK 415 (462)
Q Consensus 340 ~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~ 415 (462)
++|..||++|+++|++|++||+++|+|+|++|.. ++|..|++.+.+.|+|+.+. +++.++++|.+++ +|++.++
T Consensus 331 ~ll~~ad~~V~~~G~~t~~Ea~~~G~P~i~~p~~-~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll-~~~~~~~ 408 (441)
T 2yjn_A 331 ALLPTCAATVHHGGPGSWHTAAIHGVPQVILPDG-WDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVL-DDPAHRA 408 (441)
T ss_dssp HHGGGCSEEEECCCHHHHHHHHHTTCCEEECCCS-HHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHH-HCHHHHH
T ss_pred HHHhhCCEEEECCCHHHHHHHHHhCCCEEEeCCc-ccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHh-cCHHHHH
Confidence 8999999999999999999999999999999984 44567999999999998876 6889999999999 7999999
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 416 RMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 416 ~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
+|++.++++....+++++++.|++++.++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 437 (441)
T 2yjn_A 409 GAARMRDDMLAEPSPAEVVGICEELAAGR 437 (441)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 33
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.89 E-value=3.5e-21 Score=194.28 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=124.4
Q ss_pred CCCcEEEEEeCCCC-CccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHh
Q 012492 266 PILPAVLLMGGGEG-MGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGA 344 (462)
Q Consensus 266 ~~~~~iLv~gG~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~ 344 (462)
.++++|++++|+.+ ..+. +..+++.+.+ .+.++++++|.+... . .....++.+.+|+++ .++|..
T Consensus 236 ~~~~~v~v~~Gs~~~~~~~---~~~~~~al~~-----~~~~~v~~~g~~~~~---~--~~~~~~v~~~~~~~~-~~~l~~ 301 (415)
T 1iir_A 236 AGPPPVYLGFGSLGAPADA---VRVAIDAIRA-----HGRRVILSRGWADLV---L--PDDGADCFAIGEVNH-QVLFGR 301 (415)
T ss_dssp TSSCCEEEECC---CCHHH---HHHHHHHHHH-----TTCCEEECTTCTTCC---C--SSCGGGEEECSSCCH-HHHGGG
T ss_pred hCCCeEEEeCCCCCCcHHH---HHHHHHHHHH-----CCCeEEEEeCCCccc---c--cCCCCCEEEeCcCCh-HHHHhh
Confidence 34567889998885 3332 3333333332 134678888876421 1 134468999999976 478899
Q ss_pred cchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012492 345 CDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKTDELKRMSEN 420 (462)
Q Consensus 345 aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~~~~~~m~~~ 420 (462)
||++|+++|.+|++||+++|+|+|+.|...+ |..|++.+.+.|+|+.++ ++++++++|.++ +|++.++++++.
T Consensus 302 ~d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l--~~~~~~~~~~~~ 378 (415)
T 1iir_A 302 VAAVIHHGGAGTTHVAARAGAPQILLPQMAD-QPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA--LTPETHARATAV 378 (415)
T ss_dssp SSEEEECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH--TSHHHHHHHHHH
T ss_pred CCEEEeCCChhHHHHHHHcCCCEEECCCCCc-cHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH--cCHHHHHHHHHH
Confidence 9999999999999999999999999998544 567999999999998875 688999999998 489999999999
Q ss_pred HHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 421 ALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 421 a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
+++.....+++++++.|++++..+
T Consensus 379 ~~~~~~~~~~~~~~~~i~~~~~~~ 402 (415)
T 1iir_A 379 AGTIRTDGAAVAARLLLDAVSREK 402 (415)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHTC-
T ss_pred HHHHhhcChHHHHHHHHHHHHhcc
Confidence 999888899999999999998754
No 34
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.88 E-value=4.5e-21 Score=192.77 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=131.7
Q ss_pred HHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccc
Q 012492 256 DNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE 335 (462)
Q Consensus 256 ~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~ 335 (462)
+++++.+. +++++|++++|+.+. ..+.+..+++.+.+ .++++++.+|.... ...+...|+.+.+|.
T Consensus 211 ~~l~~~l~--~~~~~Vlv~~Gs~~~--~~~~~~~~~~al~~-----~~~~vv~~~g~~~~-----~~~~~~~~v~~~~~~ 276 (404)
T 3h4t_A 211 AELEGFLR--AGSPPVYVGFGSGPA--PAEAARVAIEAVRA-----QGRRVVLSSGWAGL-----GRIDEGDDCLVVGEV 276 (404)
T ss_dssp HHHHHHHH--TSSCCEEECCTTSCC--CTTHHHHHHHHHHH-----TTCCEEEECTTTTC-----CCSSCCTTEEEESSC
T ss_pred HHHHHHHh--cCCCeEEEECCCCCC--cHHHHHHHHHHHHh-----CCCEEEEEeCCccc-----ccccCCCCEEEecCC
Confidence 44444443 456788999888873 12223333333332 24678888886531 122346799999998
Q ss_pred hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCCH
Q 012492 336 TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTKT 411 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d~ 411 (462)
+. .++|..||++|+++|.+|+.||+++|+|+|+.|... +|..|+..+++.|+|..+. +++.+.+++.+++ + +
T Consensus 277 ~~-~~ll~~~d~~v~~gG~~t~~Eal~~GvP~v~~p~~~-dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll-~-~ 352 (404)
T 3h4t_A 277 NH-QVLFGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKA-DQPYYAGRVADLGVGVAHDGPTPTVESLSAALATAL-T-P 352 (404)
T ss_dssp CH-HHHGGGSSEEEECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHT-S-H
T ss_pred CH-HHHHhhCcEEEECCcHHHHHHHHHcCCCEEEcCCcc-cHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHh-C-H
Confidence 64 899999999999999999999999999999998754 4566999999999998875 6889999999999 6 9
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhccCC
Q 012492 412 DELKRMSENALKLAQPEAVVDIVKDIHDLAAQRGP 446 (462)
Q Consensus 412 ~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~~~ 446 (462)
+.+++|++.+..+.. .+++++++.|++++..+.+
T Consensus 353 ~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~ 386 (404)
T 3h4t_A 353 GIRARAAAVAGTIRT-DGTTVAAKLLLEAISRQRS 386 (404)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhCCC
Confidence 999999999999988 9999999999999976543
No 35
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.88 E-value=6.1e-21 Score=192.50 Aligned_cols=189 Identities=13% Similarity=0.030 Sum_probs=138.9
Q ss_pred cEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH
Q 012492 236 QIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT 315 (462)
Q Consensus 236 ~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~ 315 (462)
++..+|++...... ..+..+.+.+ ++++++|++++|+.+.....+.+..+++.+.+ .+.++++++|.+..
T Consensus 210 ~~~~vG~~~~~~~~---~~~~~~~~~l--~~~~~~v~v~~Gs~~~~~~~~~~~~~~~al~~-----~~~~~v~~~g~~~~ 279 (416)
T 1rrv_A 210 DAVQTGAWLLSDER---PLPPELEAFL--AAGSPPVHIGFGSSSGRGIADAAKVAVEAIRA-----QGRRVILSRGWTEL 279 (416)
T ss_dssp CCEECCCCCCCCCC---CCCHHHHHHH--HSSSCCEEECCTTCCSHHHHHHHHHHHHHHHH-----TTCCEEEECTTTTC
T ss_pred CeeeECCCccCccC---CCCHHHHHHH--hcCCCeEEEecCCCCccChHHHHHHHHHHHHH-----CCCeEEEEeCCccc
Confidence 45566665543211 1123333332 23446788999988753344555555555543 23578888887641
Q ss_pred HHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC-
Q 012492 316 LASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR- 394 (462)
Q Consensus 316 l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~- 394 (462)
+ . ....+++.+.+|++ +.++|..||++|+++|++|++||+++|+|+|+.|... +|..|++.+++.|+|+.+.
T Consensus 280 --~-~--~~~~~~v~~~~~~~-~~~ll~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~ 352 (416)
T 1rrv_A 280 --V-L--PDDRDDCFAIDEVN-FQALFRRVAAVIHHGSAGTEHVATRAGVPQLVIPRNT-DQPYFAGRVAALGIGVAHDG 352 (416)
T ss_dssp --C-C--SCCCTTEEEESSCC-HHHHGGGSSEEEECCCHHHHHHHHHHTCCEEECCCSB-THHHHHHHHHHHTSEEECSS
T ss_pred --c-c--cCCCCCEEEeccCC-hHHHhccCCEEEecCChhHHHHHHHcCCCEEEccCCC-CcHHHHHHHHHCCCccCCCC
Confidence 1 1 23457899999996 6889999999999999999999999999999999854 4567999999999998875
Q ss_pred ---CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHH-HHHHhcc
Q 012492 395 ---SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDI-HDLAAQR 444 (462)
Q Consensus 395 ---~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i-~~l~~~~ 444 (462)
+++.++++|.++ . |++.+++|++.+++.....++ ++++.+ ++++..+
T Consensus 353 ~~~~~~~l~~~i~~l-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~i~e~~~~~~ 403 (416)
T 1rrv_A 353 PTPTFESLSAALTTV-L-APETRARAEAVAGMVLTDGAA-AAADLVLAAVGREK 403 (416)
T ss_dssp SCCCHHHHHHHHHHH-T-SHHHHHHHHHHTTTCCCCHHH-HHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHh-h-CHHHHHHHHHHHHHHhhcCcH-HHHHHHHHHHhccC
Confidence 578999999998 4 899999999999988888899 999999 8887654
No 36
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.87 E-value=9.8e-22 Score=195.45 Aligned_cols=311 Identities=14% Similarity=0.115 Sum_probs=194.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHh-hcCCcchhh
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAF-HSTSPKWIH 141 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~-~~~~~~~~~ 141 (462)
.+|+|.+.+. |....+..|+++|.+++ ++.+....+ .+ .......+ .+... +.. .+
T Consensus 41 ~~iwih~~s~--G~~~~~~~L~~~L~~~~----~v~v~~~~~--~~--~~~~~~~~---------~~v~~~~~~---p~- 97 (374)
T 2xci_A 41 GALWVHTASI--GEFNTFLPILKELKREH----RILLTYFSP--RA--REYLKTKS---------DFYDCLHPL---PL- 97 (374)
T ss_dssp TCEEEECSSH--HHHHHHHHHHHHHHHHS----CEEEEESCG--GG--HHHHHTTG---------GGCSEEEEC---CC-
T ss_pred CCEEEEcCCH--HHHHHHHHHHHHHHhcC----CEEEEEcCC--cH--HHHHHHhc---------ccccceeEC---CC-
Confidence 5799999998 55778889999999986 233331110 00 00000000 00000 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC-CcccccCCCcEEEEcC
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC-HPTWFHPRVNRCYCPS 220 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~-~~~~~~~~~d~~i~~s 220 (462)
.....+.+++++++||+|++....... ..+... .+ |++.+.+.+... ...++.+.+|.++++|
T Consensus 98 ---------~~~~~l~~~l~~~~pDiv~~~~~~~~~--~~~~~~----~~-p~~~~~~~~~~~~~~~~~~~~~d~ii~~S 161 (374)
T 2xci_A 98 ---------DNPFSVKRFEELSKPKALIVVEREFWP--SLIIFT----KV-PKILVNAYAKGSLIEKILSKKFDLIIMRT 161 (374)
T ss_dssp ---------SSHHHHHHHHHHHCCSEEEEESCCCCH--HHHHHC----CS-CEEEEEECCCCCHHHHHHHTTCSEEEESC
T ss_pred ---------CCHHHHHHHHHHhCCCEEEEECccCcH--HHHHHH----hC-CEEEEEeecCchHHHHHHHHhCCEEEECC
Confidence 012345678999999999876433222 122221 13 876655543211 1135567899999999
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCC
Q 012492 221 KEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETG 300 (462)
Q Consensus 221 ~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~ 300 (462)
+.+++.+.+.|++ ++.++||+. |... ..+ +. .+. .++ ++.++ ...++...+++++ +.+.+ +
T Consensus 162 ~~~~~~l~~~g~~--ki~vi~n~~---f~~~-~~~---~~--~l~--~~v-i~~~~-~~~k~~~~ll~A~-~~l~~---~ 222 (374)
T 2xci_A 162 QEDVEKFKTFGAK--RVFSCGNLK---FICQ-KGK---GI--KLK--GEF-IVAGS-IHTGEVEIILKAF-KEIKK---T 222 (374)
T ss_dssp HHHHHHHHTTTCC--SEEECCCGG---GCCC-CCS---CC--CCS--SCE-EEEEE-ECGGGHHHHHHHH-HHHHT---T
T ss_pred HHHHHHHHHcCCC--eEEEcCCCc---cCCC-cCh---hh--hhc--CCE-EEEEe-CCCchHHHHHHHH-HHHHh---h
Confidence 9999999888887 899999863 2111 111 11 111 243 44444 3445555555554 45543 2
Q ss_pred CCCceEEEEccCCH----HHHHHHhhccCC--------CCeEEeccchhHHHHHHhcchheecC-----ChhhHHHHHHh
Q 012492 301 RPIGQLIIICGRNR----TLASTLQSEEWK--------IPVKVRGFETQMEKWMGACDCIITKA-----GPGTIAEALIR 363 (462)
Q Consensus 301 ~~~~~~lvv~G~~~----~l~~~~~~~~~~--------~~V~~~g~~~~~~~l~~~aD~vV~~s-----g~~t~~EAla~ 363 (462)
.|+++++++ |++. ++.+.++++++. .+|.+.|+.+++..+|+.||+++.+| ||.+++|||++
T Consensus 223 ~p~~~lviv-G~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~ 301 (374)
T 2xci_A 223 YSSLKLILV-PRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCW 301 (374)
T ss_dssp CTTCEEEEE-ESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTT
T ss_pred CCCcEEEEE-CCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHh
Confidence 578876655 5443 355566666654 47888898899999999999976543 47899999999
Q ss_pred CCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc--HHHHHHH
Q 012492 364 GLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPE--AVVDIVK 435 (462)
Q Consensus 364 G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~--~~~~ia~ 435 (462)
|+|||+.+..++... .+..+.+.|.++.+.|+++++++|.+++ +| +.+++|++++++++... +++++++
T Consensus 302 G~PVI~~~~~~~~~e-~~~~~~~~G~l~~~~d~~~La~ai~~ll-~d-~~r~~mg~~ar~~~~~~~ga~~~~~~ 372 (374)
T 2xci_A 302 GIPVIYGPYTHKVND-LKEFLEKEGAGFEVKNETELVTKLTELL-SV-KKEIKVEEKSREIKGCYLEKLREFLR 372 (374)
T ss_dssp TCCEEECSCCTTSHH-HHHHHHHTTCEEECCSHHHHHHHHHHHH-HS-CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEECCCccChHH-HHHHHHHCCCEEEeCCHHHHHHHHHHHH-hH-HHHHHHHHHHHHHHHhcccHHHHHHh
Confidence 999998765433221 2334456788888899999999999999 68 99999999999887542 3344443
No 37
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.87 E-value=4.1e-21 Score=201.41 Aligned_cols=337 Identities=9% Similarity=-0.024 Sum_probs=206.1
Q ss_pred CCCCCeEEEEecCCC-chHHHHHHHHHHH--HhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcC
Q 012492 59 AERTKNVLILMSDTG-GGHRASAEAIRDA--FKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHST 135 (462)
Q Consensus 59 ~~~~~kIli~~~~~G-~Gh~~~a~aLa~~--L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 135 (462)
+.++|||++++.+.+ +|.......|++. +.+.+ +++++....+ . ........+.. .. .+...
T Consensus 202 ~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~---~~v~~~~~~~---~-~~~~~~~~~~~------~~--~~~~~ 266 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPD---LQMHLFATSG---D-DGSTLRTRLAQ------AS--TLHDV 266 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTT---EEEEEEESSC---C-CSCHHHHHHHH------TS--EEEEC
T ss_pred CCCCeEEEEECcccccChHHHHHHHHHhhccCCccc---EEEEEEECCC---C-CccHHHHHHHh------cC--eEEEC
Confidence 356789999997652 4677778889999 66654 4666553211 0 00111111110 00 11111
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCccc--chHHHHHHHHcCCCCCCeEEEEecCCCC-CC-cccccC
Q 012492 136 SPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLM--QHIPLWVLKWQGLQKKVIFVTVITDLNT-CH-PTWFHP 211 (462)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~--~~~~~~~~~~~~~~~~iP~v~~~~d~~~-~~-~~~~~~ 211 (462)
. . ....++.+.+++.+||+||+.++.. ..... .++ ...|++...+.+.. .. ....+.
T Consensus 267 ~--~-----------~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 327 (568)
T 2vsy_A 267 T--A-----------LGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV-FAL-----RPAPVQVNWLAYPGTSGAPWMDYV 327 (568)
T ss_dssp T--T-----------CCHHHHHHHHHHTTCSEEEECSSCTTCSSCHH-HHT-----CCSSEEEEESSSSSCCCCTTCCEE
T ss_pred C--C-----------CCHHHHHHHHHhCCCCEEEECCCCCCcchHHH-Hhc-----CCCceeEeeecCCcccCCCCceEE
Confidence 0 0 0123466789999999999866443 22222 222 13565544443211 00 111112
Q ss_pred CCcEEEEcCHHHHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHH
Q 012492 212 RVNRCYCPSKEVAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALG 291 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~ 291 (462)
.+|.++++|+...+ +. +++.+++|.+.+........+...|+++|++++. +++.+|+... |+...++.++.
T Consensus 328 ~~d~~i~~s~~~~~------~~-~~i~~ipn~~~~~~~~~~~~~~~~r~~~~~~~~~-~v~~~g~~~~-K~~~~li~a~~ 398 (568)
T 2vsy_A 328 LGDAFALPPALEPF------YS-EHVLRLQGAFQPSDTSRVVAEPPSRTQCGLPEQG-VVLCCFNNSY-KLNPQSMARML 398 (568)
T ss_dssp EECTTTSCTTTGGG------CS-SEEEECSSCSCCCCTTCCCCCCCCTGGGTCCTTS-CEEEECCCGG-GCCHHHHHHHH
T ss_pred EECCCcCCcccccC------Cc-ceeEcCCCcCCCCCCCCCCCCCCCccccCCCCCC-EEEEeCCccc-cCCHHHHHHHH
Confidence 34556667765432 22 6899999854432111111233456778987654 4555555444 76777776664
Q ss_pred HhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCC-CCeEEeccc--hhHHHHHHhcchheecC---ChhhHHHHHH
Q 012492 292 ESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWK-IPVKVRGFE--TQMEKWMGACDCIITKA---GPGTIAEALI 362 (462)
Q Consensus 292 ~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~-~~V~~~g~~--~~~~~l~~~aD~vV~~s---g~~t~~EAla 362 (462)
+.+.+ .|+++++++++.+. .+.+.++++++. ++|.|.|++ +++.++|+.||++|.+| +|++++|||+
T Consensus 399 ~l~~~----~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma 474 (568)
T 2vsy_A 399 AVLRE----VPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALW 474 (568)
T ss_dssp HHHHH----CTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHH
T ss_pred HHHHh----CCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCCCCcHHHHHHHh
Confidence 43332 47787665542443 356667777887 899999999 48999999999999876 4899999999
Q ss_pred hCCCEEEecCCCCccccchHHHHHCCce-eeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCcHHHHHHHHHH
Q 012492 363 RGLPIILNDYIPGQEKGNVPYVVDNGAG-VFTRSPKETARIVTEWFSTKTDELKRMSENALKLA---QPEAVVDIVKDIH 438 (462)
Q Consensus 363 ~G~PvI~~~~~~~~~~~n~~~l~~~G~g-~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~---~~~~~~~ia~~i~ 438 (462)
+|+|||+.+.........+..+...|.. ++.++++++++++.+++ +|++.+++|++++++.+ ..++++.+++.++
T Consensus 475 ~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~~~~~la~~i~~l~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 553 (568)
T 2vsy_A 475 TGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALA-SDPAALTALHARVDVLRRASGVFHMDGFADDFG 553 (568)
T ss_dssp TTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred CCCCEEeccCCCchHHHHHHHHHHCCChhhhcCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 9999999543211111112334444543 34458999999999999 79999999999999887 6799999999998
Q ss_pred HHHhc
Q 012492 439 DLAAQ 443 (462)
Q Consensus 439 ~l~~~ 443 (462)
+++++
T Consensus 554 ~~y~~ 558 (568)
T 2vsy_A 554 ALLQA 558 (568)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87753
No 38
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.86 E-value=6.4e-19 Score=182.82 Aligned_cols=217 Identities=15% Similarity=0.099 Sum_probs=147.4
Q ss_pred CCcEEEEcCHHHHHHHHHc-C--------CCCCcEEEcCCCCChhhhcccC-------------------ChHHHHHHcC
Q 012492 212 RVNRCYCPSKEVAKRASYF-G--------LEVSQIRVFGLPIRPSFVRAVI-------------------SKDNLRLELQ 263 (462)
Q Consensus 212 ~~d~~i~~s~~~~~~l~~~-g--------i~~~~i~v~g~pv~~~~~~~~~-------------------~~~~~r~~l~ 263 (462)
.+|+++++|+..++.+... + .+..++.++.|+|+.+.+.+.. .+..+++.+|
T Consensus 241 ~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~g 320 (536)
T 3vue_A 241 EADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAG 320 (536)
T ss_dssp HCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTT
T ss_pred hccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcC
Confidence 3789999999998887652 2 2346899999999877655421 1234556677
Q ss_pred CC--CCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhh--ccCCCCeEEeccc--hh
Q 012492 264 MD--PILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQS--EEWKIPVKVRGFE--TQ 337 (462)
Q Consensus 264 l~--~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~--~~~~~~V~~~g~~--~~ 337 (462)
++ ++.|+|+++|+....|++..+++++ +.+.+ .+.++++++.........++. .....++.+.+.. ++
T Consensus 321 l~~d~~~p~i~~vgRl~~~Kg~~~li~a~-~~l~~-----~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 394 (536)
T 3vue_A 321 LPVDRKIPLIAFIGRLEEQKGPDVMAAAI-PELMQ-----EDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPL 394 (536)
T ss_dssp SCCCTTSCEEEEECCBSGGGCHHHHHHHH-HHHTT-----SSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHH
T ss_pred CCCCCCCcEEEEEeeccccCChHHHHHHH-HHhHh-----hCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHH
Confidence 74 5678777777666666666666655 44543 245655443333322222222 2456788888765 56
Q ss_pred HHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccccchHHHHHCC-cee----------eeC--CHHHHH
Q 012492 338 MEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNG-AGV----------FTR--SPKETA 400 (462)
Q Consensus 338 ~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G-~g~----------~~~--~~~~la 400 (462)
+..+|+.||++|.+|. |.+++|||++|+|+|+++.++ ...++.+| .|+ +++ |+++++
T Consensus 395 ~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG------~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la 468 (536)
T 3vue_A 395 AHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGG------LVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVA 468 (536)
T ss_dssp HHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTH------HHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHH
T ss_pred HHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCC------chheeeCCCCccccccCCCceeEECCCCHHHHH
Confidence 7889999999999984 899999999999999998642 22233333 344 332 578899
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhc
Q 012492 401 RIVTEWFS--TKTDELKRMSENALKLAQPEAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 401 ~~i~~ll~--~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~~ 443 (462)
++|.+++. +++ .+++|.+++. .+.++|+++|+.++++..+
T Consensus 469 ~ai~ral~~~~~~-~~~~~~~~am--~~~fSW~~~A~~y~~ly~~ 510 (536)
T 3vue_A 469 ATLKRAIKVVGTP-AYEEMVRNCM--NQDLSWKGPAKNWENVLLG 510 (536)
T ss_dssp HHHHHHHHHTTSH-HHHHHHHHHH--HSCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcH-HHHHHHHHHH--HhcCCHHHHHHHHHHHHHH
Confidence 99988763 344 4667777663 3679999999999998864
No 39
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.83 E-value=8e-20 Score=173.06 Aligned_cols=267 Identities=15% Similarity=0.107 Sum_probs=165.1
Q ss_pred CeEEEEe---cCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcch
Q 012492 63 KNVLILM---SDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW 139 (462)
Q Consensus 63 ~kIli~~---~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 139 (462)
|||+|.+ ..+|.||.+++++||++|+ . ..|++... .+.....+ .| + .......
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA~~l~-~-----v~F~~~~~---~~~~~~~~--g~-------~-----v~~l~~~- 56 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLAKQYS-D-----VSFACLPL---EGSLIDEI--PY-------P-----VYELSSE- 56 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHHTTCS-S-----EEEEECCC---TTCCGGGC--CS-------C-----EEECSSS-
T ss_pred CEEEEEEecCCCccccHHHHHHHHHHHHH-h-----CEEEEecC---cHhHHHHC--CC-------e-----EEEcCcc-
Confidence 7999997 3489999999999999998 1 33444211 11111110 00 0 0000000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEc
Q 012492 140 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCP 219 (462)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~ 219 (462)
....+.+.+++.+||+||.++.....-.....+.. .+.+++ ++.|... . ..+|.++-+
T Consensus 57 ------------d~~~~~~~l~~~~~d~lIvD~Y~~~~~~~~~lk~~---~~~~i~-~iDD~~~----~--~~~Dllin~ 114 (282)
T 3hbm_A 57 ------------SIYELINLIKEEKFELLIIDHYGISVDDEKLIKLE---TGVKIL-SFDDEIK----P--HHCDILLNV 114 (282)
T ss_dssp ------------CHHHHHHHHHHHTCSEEEEECTTCCHHHHHHHHHH---HCCEEE-EECSSCC----C--CCCSEEEEC
T ss_pred ------------CHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHh---cCcEEE-EEecCCC----c--ccCCEEEeC
Confidence 01234566888999999999976654322233321 145554 5677641 1 247888876
Q ss_pred CHHHHHHHHHcCCCCCcEEEcCC---CCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhc
Q 012492 220 SKEVAKRASYFGLEVSQIRVFGL---PIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLD 296 (462)
Q Consensus 220 s~~~~~~l~~~gi~~~~i~v~g~---pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~ 296 (462)
+........+..+|+.....+|+ |++++|.... +. ..++.+.||+++|+.+..+.. ..+++.|.+
T Consensus 115 ~~~~~~~~Y~~~~p~~~~~l~G~~Y~~lR~eF~~~~--~~-------~r~~~~~ILv~~GG~d~~~l~---~~vl~~L~~ 182 (282)
T 3hbm_A 115 NAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEA--KE-------NRKKKYDFFICMGGTDIKNLS---LQIASELPK 182 (282)
T ss_dssp STTCCGGGGTTTCC-CCEEEESGGGCCCCHHHHHHT--TC-------CCCCCEEEEEECCSCCTTCHH---HHHHHHSCT
T ss_pred CcccchhhccccCCCCCeEeeCCcccccCHHHHHhh--hh-------ccccCCeEEEEECCCchhhHH---HHHHHHhhc
Confidence 54332111112345555667888 8999887631 10 112356788776665544433 233344432
Q ss_pred ccCCCCCceEEEEccCCHHHHHHHhhc-cCCCCeEEeccchhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCCCC
Q 012492 297 KETGRPIGQLIIICGRNRTLASTLQSE-EWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPG 375 (462)
Q Consensus 297 ~~~~~~~~~~lvv~G~~~~l~~~~~~~-~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~ 375 (462)
. .++.+++|.+....+.+++. ....++++.+|.++|.++|+.||++|+++| +|++|++++|+|+|+.|...+
T Consensus 183 ----~--~~i~vv~G~~~~~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~aDlvI~~gG-~T~~E~~~~g~P~i~ip~~~~ 255 (282)
T 3hbm_A 183 ----T--KIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHENIAKLMNESNKLIISAS-SLVNEALLLKANFKAICYVKN 255 (282)
T ss_dssp ----T--SCEEEEECTTCTTHHHHHHHHHTCSSEEEEESCSCHHHHHHTEEEEEEESS-HHHHHHHHTTCCEEEECCSGG
T ss_pred ----C--CCEEEEECCCchHHHHHHHHHhhCCCEEEEeCHHHHHHHHHHCCEEEECCc-HHHHHHHHcCCCEEEEeCCCC
Confidence 1 24667788875433333321 223489999999999999999999999755 899999999999999997655
Q ss_pred ccccchHHHHHCCceeeeCC
Q 012492 376 QEKGNVPYVVDNGAGVFTRS 395 (462)
Q Consensus 376 ~~~~n~~~l~~~G~g~~~~~ 395 (462)
| ..|++.+.+.|++..+..
T Consensus 256 Q-~~nA~~l~~~G~~~~~~~ 274 (282)
T 3hbm_A 256 Q-ESTATWLAKKGYEVEYKY 274 (282)
T ss_dssp G-HHHHHHHHHTTCEEECGG
T ss_pred H-HHHHHHHHHCCCEEEcch
Confidence 4 569999999999988764
No 40
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.81 E-value=5.8e-20 Score=184.94 Aligned_cols=246 Identities=13% Similarity=0.028 Sum_probs=152.9
Q ss_pred hhCCCEEEECCcccchHHHHHHH----HcCCCCCCeEEEEecCCCCC-Cc--------ccccCCCc--EEEEcCHHHHHH
Q 012492 162 EYKPDIIISVHPLMQHIPLWVLK----WQGLQKKVIFVTVITDLNTC-HP--------TWFHPRVN--RCYCPSKEVAKR 226 (462)
Q Consensus 162 ~~kPDvVi~~~~~~~~~~~~~~~----~~~~~~~iP~v~~~~d~~~~-~~--------~~~~~~~d--~~i~~s~~~~~~ 226 (462)
..+||+||+++...........+ ..+. .+.|.+.+++++... ++ .+.+...+ .++++|+..++.
T Consensus 130 ~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~~~~~ 208 (413)
T 2x0d_A 130 VAKHDIFIATAWWTAYAAQRIVSWQSDTYGI-PPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNSELLKQY 208 (413)
T ss_dssp ECTTEEEEECSHHHHHHHHHHHHHHHHHHTC-CCCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCEEEEEESHHHHHH
T ss_pred CCCCCEEEEehHHHHHHHHHhhhhhhhhccc-ccCcEEEEEeechhhcCccChHHHHHHHHhccCCceEEEEcCHHHHHH
Confidence 35799999886432221111110 0111 245666667776421 11 12233333 578899999999
Q ss_pred HHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCcc-HHHHHHHHHHhhhcccCCCCC--
Q 012492 227 ASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGP-VKETAMALGESLLDKETGRPI-- 303 (462)
Q Consensus 227 l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~-~~~~l~~l~~~l~~~~~~~~~-- 303 (462)
+.+.|++..++.+++++++.+.+.+ + ..+ .++.+.++++|+....++ ...+++++ +.+.+. .|+
T Consensus 209 l~~~g~~~~~~~~i~~g~d~~~~~~---~-----~~~-~~~~~~il~~gr~~~~~Kg~~~li~A~-~~l~~~---~~~~~ 275 (413)
T 2x0d_A 209 FNNKGYNFTDEYFFQPKINTTLKNY---I-----NDK-RQKEKIILVYGRPSVKRNAFTLIVEAL-KIFVQK---YDRSN 275 (413)
T ss_dssp HHHHTCCCSEEEEECCCCCHHHHTT---T-----TSC-CCCCSEEEEEECTTCGGGCHHHHHHHH-HHHHHH---CTTGG
T ss_pred HHHcCCCCCceEEeCCCcCchhhcc---c-----ccc-cCCCCEEEEEecCchhccCHHHHHHHH-HHHHHh---CCCCC
Confidence 9888887677889999987664432 0 112 234556777777655544 44445444 455432 343
Q ss_pred -ceEEEEccCCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCc
Q 012492 304 -GQLIIICGRNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQ 376 (462)
Q Consensus 304 -~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~ 376 (462)
++++ ++|++... .+++...+|+|.|++ +++.++|+.||++|++|. |++++||||||+|||+... +..
T Consensus 276 ~~~l~-ivG~~~~~----~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~~-g~~ 349 (413)
T 2x0d_A 276 EWKII-SVGEKHKD----IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNKY-ENK 349 (413)
T ss_dssp GCEEE-EEESCCCC----EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEECB-TTB
T ss_pred ceEEE-EEcCCchh----hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEeCC-Ccc
Confidence 6655 45655321 345666789999997 799999999999998762 8899999999999999542 222
Q ss_pred cccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 012492 377 EKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKD 436 (462)
Q Consensus 377 ~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~ 436 (462)
+.+.+...|++++ |+++++++|.+++ +|++.+++ ++++.+..++|+++++.
T Consensus 350 -----e~v~~~~~G~lv~~~d~~~la~ai~~ll-~~~~~~~~---~~~~~~~~~~W~~~~~~ 402 (413)
T 2x0d_A 350 -----DLSNWHSNIVSLEQLNPENIAETLVELC-MSFNNRDV---DKKESSNMMFYINEFNE 402 (413)
T ss_dssp -----CGGGTBTTEEEESSCSHHHHHHHHHHHH-HHTC----------CCBSCGGGCCCC--
T ss_pred -----hhhhcCCCEEEeCCCCHHHHHHHHHHHH-cCHHHHHH---hHHHHHHhCCHHHHHHH
Confidence 1233334677664 7999999999999 68877776 56777888999877544
No 41
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.76 E-value=5e-18 Score=170.62 Aligned_cols=222 Identities=13% Similarity=0.057 Sum_probs=150.2
Q ss_pred CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCC-----CC------cccccCCCcEEEEcCHHHHHHHHHcCC
Q 012492 164 KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNT-----CH------PTWFHPRVNRCYCPSKEVAKRASYFGL 232 (462)
Q Consensus 164 kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~-----~~------~~~~~~~~d~~i~~s~~~~~~l~~~gi 232 (462)
+||+|+......... ..+++. .++|++...|+... .. ..+..+.+|.++++|+..++.+.+.+
T Consensus 124 ~~DvIh~~~~~~~~~-~~~~~~----~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~- 197 (406)
T 2hy7_A 124 ESDVIVFESGIAVAF-IELAKR----VNPAAKLVYRASDGLSTINVASYIEREFDRVAPTLDVIALVSPAMAAEVVSRD- 197 (406)
T ss_dssp HCSEEEEESSGGGGG-HHHHHH----HCTTSEEEEEESSCHHHHTCCHHHHHHHHHHGGGCSEEEESCGGGGGGCSCST-
T ss_pred CCCEEEECCchHHHH-HHHHHH----hCCCEEEEEeccchhhcccccHHHHHHHHHHHHhCCEEEEcCHHHHHHHHhcC-
Confidence 699998433332221 134444 26787766664321 00 01235678999999999887765544
Q ss_pred CCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCC-cEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEcc
Q 012492 233 EVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPIL-PAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICG 311 (462)
Q Consensus 233 ~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~-~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G 311 (462)
++.+++|+++...+.+. .+. +.+. ++++ +.|+....+.. +..+.+. .|++++++ +|
T Consensus 198 ---~i~vipngvd~~~f~~~-~~~--------~~~~~~~i~-~vGrl~~~Kg~--~~~l~~~-------~~~~~l~i-vG 254 (406)
T 2hy7_A 198 ---NVFHVGHGVDHNLDQLG-DPS--------PYAEGIHAV-AVGSMLFDPEF--FVVASKA-------FPQVTFHV-IG 254 (406)
T ss_dssp ---TEEECCCCBCTTHHHHH-CSC--------SCCSSEEEE-EECCTTBCHHH--HHHHHHH-------CTTEEEEE-ES
T ss_pred ---CEEEEcCCcChHhcCcc-ccc--------ccCCCcEEE-EEeccccccCH--HHHHHHh-------CCCeEEEE-Ee
Confidence 79999999987655431 110 1223 4444 44555544333 3333322 36777655 46
Q ss_pred CCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheecCC----hhhHHHHH-------HhCCCEEEecCCCCccc
Q 012492 312 RNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITKAG----PGTIAEAL-------IRGLPIILNDYIPGQEK 378 (462)
Q Consensus 312 ~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~sg----~~t~~EAl-------a~G~PvI~~~~~~~~~~ 378 (462)
.+. ++++++.++|+|.|++ +++.++|+.||++|.+|. |++++||| +||+|||+++.
T Consensus 255 ~g~-----~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------ 323 (406)
T 2hy7_A 255 SGM-----GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------ 323 (406)
T ss_dssp CSS-----CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------
T ss_pred Cch-----HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------
Confidence 664 5566778899999998 689999999999998763 88999999 99999999975
Q ss_pred cchHHHHHCCceee-e--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 012492 379 GNVPYVVDNGAGVF-T--RSPKETARIVTEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDL 440 (462)
Q Consensus 379 ~n~~~l~~~G~g~~-~--~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l 440 (462)
+.+...|++ + .|+++++++|.+++ +|++ ++.++.++|+.+++.++++
T Consensus 324 -----v~~~~~G~l~v~~~d~~~la~ai~~ll-~~~~---------~~~~~~~sw~~~a~~~~~~ 373 (406)
T 2hy7_A 324 -----VVGPYKSRFGYTPGNADSVIAAITQAL-EAPR---------VRYRQCLNWSDTTDRVLDP 373 (406)
T ss_dssp -----GTCSCSSEEEECTTCHHHHHHHHHHHH-HCCC---------CCCSCCCBHHHHHHHHHCG
T ss_pred -----cccCcceEEEeCCCCHHHHHHHHHHHH-hCcc---------hhhhhcCCHHHHHHHHHHh
Confidence 222334555 4 47999999999999 5665 1556789999999999988
No 42
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=99.75 E-value=1.7e-16 Score=161.95 Aligned_cols=339 Identities=13% Similarity=0.037 Sum_probs=190.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHH--HHHhhhHHHHHHhhcCC-c
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYK--FMVKHVQLWKVAFHSTS-P 137 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~--~~~~~~~l~~~~~~~~~-~ 137 (462)
.+++|+++..+. .||..+.++||+.|..+.+ ++.|.++.............+.+.-. .-++...+......... .
T Consensus 8 ~~~~vv~~p~p~-~GHi~P~l~La~~L~~r~p-G~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 85 (463)
T 2acv_A 8 KNSELIFIPAPG-IGHLASALEFAKLLTNHDK-NLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEVEPPPQELL 85 (463)
T ss_dssp HCEEEEEECCSS-TTTHHHHHHHHHHHHHTCT-TEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCCCCCCGGGG
T ss_pred CCCEEEEEcCcc-cchHHHHHHHHHHHHhcCC-CcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCCCCCCccccc
Confidence 346899999888 5999999999999998821 13555442211000000001111000 00000000000000000 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHh---hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCC------------
Q 012492 138 KWIHSCYLAAMAAYYAKEVEAGLME---YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLN------------ 202 (462)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~l~~---~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~------------ 202 (462)
......+.... ......+.+++++ .+||+||++....... .+++. .+||.+.+.+...
T Consensus 86 ~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~--~vA~~----lgiP~v~~~~~~~~~~~~~~~~~~~ 158 (463)
T 2acv_A 86 KSPEFYILTFL-ESLIPHVKATIKTILSNKVVGLVLDFFCVSMI--DVGNE----FGIPSYLFLTSNVGFLSLMLSLKNR 158 (463)
T ss_dssp GSHHHHHHHHH-HHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGH--HHHHH----TTCCEEEEESSCHHHHHHHHHGGGS
T ss_pred CCccHHHHHHH-HhhhHHHHHHHHhccCCCCeEEEECCcchhHH--HHHHH----cCCCEEEEeCchHHHHHHHHHHHhh
Confidence 00001111111 1233466777777 6899999988654432 34554 4899876543110
Q ss_pred ---------------CCCccc------------c----------------cCCCcEEEEcCHHHHHH-H----HHcCCCC
Q 012492 203 ---------------TCHPTW------------F----------------HPRVNRCYCPSKEVAKR-A----SYFGLEV 234 (462)
Q Consensus 203 ---------------~~~~~~------------~----------------~~~~d~~i~~s~~~~~~-l----~~~gi~~ 234 (462)
...+.+ + .+..+.+++.+....+. . .+...|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~pg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p~ 238 (463)
T 2acv_A 159 QIEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKI 238 (463)
T ss_dssp CTTCCCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTS
T ss_pred cccCCCCCccccCceeECCCCCCCCChHHCchhhcCCchHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhccccC
Confidence 000111 0 02345566655433322 2 1211113
Q ss_pred CcEEEcCCCCChhhh-cc-c---CChHHHHHHcCCCCCCcEEEEEeCCCC-CccHHHHHHHHHHhhhcccCCCCCceEEE
Q 012492 235 SQIRVFGLPIRPSFV-RA-V---ISKDNLRLELQMDPILPAVLLMGGGEG-MGPVKETAMALGESLLDKETGRPIGQLII 308 (462)
Q Consensus 235 ~~i~v~g~pv~~~~~-~~-~---~~~~~~r~~l~l~~~~~~iLv~gG~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~lv 308 (462)
.++..+| |+..... .. . ...++..+.++..+++++|++++|+.+ .-. .+.+.++++.|.+ .+.+++|
T Consensus 239 ~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~-~~~~~~~~~~l~~-----~~~~~l~ 311 (463)
T 2acv_A 239 PPIYAVG-PLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFG-PSQIREIALGLKH-----SGVRFLW 311 (463)
T ss_dssp CCEEECC-CCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCC-HHHHHHHHHHHHH-----HTCEEEE
T ss_pred CcEEEeC-CCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCC-HHHHHHHHHHHHh-----CCCcEEE
Confidence 4788999 5543211 00 0 112345556655556789999999988 433 2334455555543 2468999
Q ss_pred EccCC-H----HHHHHHhhccCCCCeEEeccchhHHHHHH--hcchheecCChhhHHHHHHhCCCEEEecCCCCccccch
Q 012492 309 ICGRN-R----TLASTLQSEEWKIPVKVRGFETQMEKWMG--ACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNV 381 (462)
Q Consensus 309 v~G~~-~----~l~~~~~~~~~~~~V~~~g~~~~~~~l~~--~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~ 381 (462)
++|.+ . .+.+.+. ...++.+.+|.+++ .+|+ ++|+||+++|.+|++||+++|+|+|+.|...+| ..|+
T Consensus 312 ~~~~~~~~l~~~~~~~~~---~~~~~~v~~w~pq~-~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~dQ-~~Na 386 (463)
T 2acv_A 312 SNSAEKKVFPEGFLEWME---LEGKGMICGWAPQV-EVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ-QLNA 386 (463)
T ss_dssp ECCCCGGGSCTTHHHHHH---HHCSEEEESSCCHH-HHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTTH-HHHH
T ss_pred EECCCcccCChhHHHhhc---cCCCEEEEccCCHH-HHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhhh-HHHH
Confidence 99875 1 1222220 02478899999887 4665 799999999999999999999999999986555 6699
Q ss_pred HHH-HHCCceeee-C---------CHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012492 382 PYV-VDNGAGVFT-R---------SPKETARIVTEWFSTKTDELKRMSEN 420 (462)
Q Consensus 382 ~~l-~~~G~g~~~-~---------~~~~la~~i~~ll~~d~~~~~~m~~~ 420 (462)
..+ .+.|+|+.+ . +.+++.++|.++|+++++.+++..+.
T Consensus 387 ~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~r~~a~~l 436 (463)
T 2acv_A 387 FRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEM 436 (463)
T ss_dssp HHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTTCTHHHHHHHH
T ss_pred HHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 995 789999887 2 46889999999993245555554443
No 43
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=99.74 E-value=3.8e-16 Score=158.98 Aligned_cols=156 Identities=19% Similarity=0.151 Sum_probs=113.2
Q ss_pred HHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH--HHHHHhhccCCCCeEEeccc
Q 012492 258 LRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT--LASTLQSEEWKIPVKVRGFE 335 (462)
Q Consensus 258 ~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~--l~~~~~~~~~~~~V~~~g~~ 335 (462)
..+.++..+++++|++++|+.+.... +.+.++++.+.+ .+.+++|++|.+.. +.+.+.+ ....|+.+.+|.
T Consensus 261 ~~~wl~~~~~~~vv~vs~GS~~~~~~-~~~~~~~~~l~~-----~~~~~lw~~~~~~~~~l~~~~~~-~~~~~~~v~~w~ 333 (456)
T 2c1x_A 261 CLQWLKERKPTSVVYISFGTVTTPPP-AEVVALSEALEA-----SRVPFIWSLRDKARVHLPEGFLE-KTRGYGMVVPWA 333 (456)
T ss_dssp HHHHHHTSCTTCEEEEECCSSCCCCH-HHHHHHHHHHHH-----HTCCEEEECCGGGGGGSCTTHHH-HHTTTEEEESCC
T ss_pred HHHHHhcCCCcceEEEecCccccCCH-HHHHHHHHHHHh-----cCCeEEEEECCcchhhCCHHHHh-hcCCceEEecCC
Confidence 44555555567899999999886543 445555555543 24578899887531 1111111 123589999999
Q ss_pred hhHHHHHH--hcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHC-CceeeeC----CHHHHHHHHHHHhc
Q 012492 336 TQMEKWMG--ACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN-GAGVFTR----SPKETARIVTEWFS 408 (462)
Q Consensus 336 ~~~~~l~~--~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~-G~g~~~~----~~~~la~~i~~ll~ 408 (462)
+++ ++|+ ++|+||+++|.+|++||+++|+|+|+.|...+| ..|++.+++. |+|+.+. +.+++.++|.++|
T Consensus 334 pq~-~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ-~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll- 410 (456)
T 2c1x_A 334 PQA-EVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQ-RLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQIL- 410 (456)
T ss_dssp CHH-HHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTH-HHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHH-
T ss_pred CHH-HHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhH-HHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHH-
Confidence 886 6788 889999999999999999999999999986665 5599999999 9999875 5789999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 012492 409 TKTDELKRMSENALKL 424 (462)
Q Consensus 409 ~d~~~~~~m~~~a~~~ 424 (462)
+|++ .++|+++++++
T Consensus 411 ~~~~-~~~~r~~a~~l 425 (456)
T 2c1x_A 411 SQEK-GKKLRENLRAL 425 (456)
T ss_dssp HSHH-HHHHHHHHHHH
T ss_pred CCCc-HHHHHHHHHHH
Confidence 6774 34444444443
No 44
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.71 E-value=1.4e-16 Score=143.58 Aligned_cols=172 Identities=22% Similarity=0.177 Sum_probs=121.8
Q ss_pred cCCCCChhhhc--ccCC-----hHHHHHHcCCCCCCcEEEEEeCCC-CCccHHHHHHHHHHhhh--cccCCCCCceEEEE
Q 012492 240 FGLPIRPSFVR--AVIS-----KDNLRLELQMDPILPAVLLMGGGE-GMGPVKETAMALGESLL--DKETGRPIGQLIII 309 (462)
Q Consensus 240 ~g~pv~~~~~~--~~~~-----~~~~r~~l~l~~~~~~iLv~gG~~-~~~~~~~~l~~l~~~l~--~~~~~~~~~~~lvv 309 (462)
++|+++...+. +... +..+++++++++ .++++++|+.. ..++...++.++ +.+. +. .|+++++++
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~-~~~i~~~G~~~~~~K~~~~li~a~-~~l~~~~~---~~~~~l~i~ 76 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKSLLSKFGMDE-GVTFMFIGRFDRGQKGVDVLLKAI-EILSSKKE---FQEMRFIII 76 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCS-CEEEEEESCBCSSSSCHHHHHHHH-HHHTTSGG---GGGEEEEEE
T ss_pred CCCccChhhccccccccchhhHHHHHHHHcCCCC-CCEEEEeeccccccCCHHHHHHHH-HHHHhhcc---CCCeEEEEE
Confidence 46778877665 5322 677899999975 45555555444 445566656554 4553 31 367877665
Q ss_pred ccCCH----HHHHHHhhccCCCCeEE-eccch--hHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCCCCccc
Q 012492 310 CGRNR----TLASTLQSEEWKIPVKV-RGFET--QMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYIPGQEK 378 (462)
Q Consensus 310 ~G~~~----~l~~~~~~~~~~~~V~~-~g~~~--~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~~~~~~ 378 (462)
++... .+.+.+++++ +|++ .|+++ ++..+|+.||++|.++. +.+++|||++|+|+|+++.++
T Consensus 77 G~~~~~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~---- 149 (200)
T 2bfw_A 77 GKGDPELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG---- 149 (200)
T ss_dssp CCBCHHHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHH----
T ss_pred CCCChHHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCC----
Confidence 54441 2444455444 9999 99996 99999999999998873 889999999999999997531
Q ss_pred cchHHHHHCCceeeeC--CHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcC
Q 012492 379 GNVPYVVDNGAGVFTR--SPKETARIVTEWFST-KTDELKRMSENALKLAQ 426 (462)
Q Consensus 379 ~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~-d~~~~~~m~~~a~~~~~ 426 (462)
..+.+ +.+.|+++. ++++++++|.+++ + |++.+++|++++++++.
T Consensus 150 -~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~-~~~~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 150 -LRDII-TNETGILVKAGDPGELANAILKAL-ELSRSDLSKFRENCKKRAM 197 (200)
T ss_dssp -HHHHC-CTTTCEEECTTCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
T ss_pred -hHHHc-CCCceEEecCCCHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHH
Confidence 22333 445677765 8999999999999 7 99999999999988654
No 45
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.70 E-value=2.2e-15 Score=153.76 Aligned_cols=263 Identities=11% Similarity=0.001 Sum_probs=169.1
Q ss_pred CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCccc--c---------cCCCcEEEEcCHHHHHHHHH---
Q 012492 164 KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTW--F---------HPRVNRCYCPSKEVAKRASY--- 229 (462)
Q Consensus 164 kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~--~---------~~~~d~~i~~s~~~~~~l~~--- 229 (462)
.+|+|+++.......+.. ++... .++|++.+.|...+....| + ...+|.+...+....+.+..
T Consensus 123 ~~DiV~vHdyhl~~l~~~-lr~~~--~~~~i~~~~H~pfp~~~~~~~lp~~~~il~~ll~~d~i~f~~~~~~~~f~~~~~ 199 (482)
T 1uqt_A 123 DDDIIWIHDYHLLPFAHE-LRKRG--VNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLS 199 (482)
T ss_dssp TTCEEEEESGGGTTHHHH-HHHTT--CCSCEEEECCSCCCCHHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHH-HHHhC--CCCcEEEEEcCCCCCHHHHhhCccHHHHHHhhhccCeEEEECHHHHHHHHHHHH
Confidence 459999887655544333 33322 4799988777532111100 0 01357776666655544432
Q ss_pred --cC------------CCCCcEEEcCCCCChhhhccc---C-C--hHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHH
Q 012492 230 --FG------------LEVSQIRVFGLPIRPSFVRAV---I-S--KDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMA 289 (462)
Q Consensus 230 --~g------------i~~~~i~v~g~pv~~~~~~~~---~-~--~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~ 289 (462)
.+ -...++.+++++|+...+.+. . . ...+|++++ ++++|+.+|+....|++..++++
T Consensus 200 ~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A 276 (482)
T 1uqt_A 200 NLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVERLDYSKGLPERFLA 276 (482)
T ss_dssp HHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHH
T ss_pred HHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHH
Confidence 11 123468899999997655421 1 1 456788886 45666666555556777777776
Q ss_pred HHHhhhcccCCCCC----ceEEEEccC----CH---HHHHHHhhc--------cC--CCCeEE-eccc--hhHHHHHHhc
Q 012492 290 LGESLLDKETGRPI----GQLIIICGR----NR---TLASTLQSE--------EW--KIPVKV-RGFE--TQMEKWMGAC 345 (462)
Q Consensus 290 l~~~l~~~~~~~~~----~~~lvv~G~----~~---~l~~~~~~~--------~~--~~~V~~-~g~~--~~~~~l~~~a 345 (462)
+...+.+ +|+ +.+++++++ ++ ++++.++++ +. ..+|.+ .|++ +++..+|+.|
T Consensus 277 ~~~ll~~----~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~A 352 (482)
T 1uqt_A 277 YEALLEK----YPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYS 352 (482)
T ss_dssp HHHHHHH----CGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHC
T ss_pred HHHHHHh----CccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHc
Confidence 6443332 343 445555432 22 233333322 11 135775 4655 7899999999
Q ss_pred chheecCC----hhhHHHHHHhCC-----CEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHHHhcCCHHHH
Q 012492 346 DCIITKAG----PGTIAEALIRGL-----PIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTEWFSTKTDEL 414 (462)
Q Consensus 346 D~vV~~sg----~~t~~EAla~G~-----PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ll~~d~~~~ 414 (462)
|++|.+|- +.+++|||+||+ |+|++...+..+ .+ + .|++++ |+++++++|.++|.++++.+
T Consensus 353 Dv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~-----~l-~--~g~lv~p~d~~~lA~ai~~lL~~~~~~r 424 (482)
T 1uqt_A 353 DVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAAN-----EL-T--SALIVNPYDRDEVAAALDRALTMSLAER 424 (482)
T ss_dssp SEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGG-----TC-T--TSEEECTTCHHHHHHHHHHHHTCCHHHH
T ss_pred cEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHH-----Hh-C--CeEEECCCCHHHHHHHHHHHHcCCHHHH
Confidence 99999873 899999999998 899887643222 23 2 345554 89999999999995467889
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHhcc
Q 012492 415 KRMSENALKLAQPEAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 415 ~~m~~~a~~~~~~~~~~~ia~~i~~l~~~~ 444 (462)
+++.+++++.+..++++..++.+.+.+++-
T Consensus 425 ~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 425 ISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 999999999888899999999999988765
No 46
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=138.47 Aligned_cols=150 Identities=14% Similarity=0.157 Sum_probs=111.3
Q ss_pred HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccch
Q 012492 257 NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFET 336 (462)
Q Consensus 257 ~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~ 336 (462)
++.+.+.-.++.+++++++|+.+.....+.+..+++.+.+ .+.++++++|.... + .+..+|++.||++
T Consensus 10 ~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~-----~~~~~~~~~g~~~~-----~--~~~~~v~~~~~~~ 77 (170)
T 2o6l_A 10 EMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQ-----IPQKVLWRFDGNKP-----D--TLGLNTRLYKWIP 77 (170)
T ss_dssp HHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTT-----SSSEEEEECCSSCC-----T--TCCTTEEEESSCC
T ss_pred HHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHh-----CCCeEEEEECCcCc-----c--cCCCcEEEecCCC
Confidence 3434333334557889999988743333444555555543 13577888776521 1 2456899999997
Q ss_pred hHHHHH--HhcchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeC----CHHHHHHHHHHHhcCC
Q 012492 337 QMEKWM--GACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTR----SPKETARIVTEWFSTK 410 (462)
Q Consensus 337 ~~~~l~--~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~----~~~~la~~i~~ll~~d 410 (462)
+ .+++ +.||++|+++|++|++||+++|+|+|++|...+ |..|+..+.+.|+|+.++ ++++++++|.+++ +|
T Consensus 78 ~-~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll-~~ 154 (170)
T 2o6l_A 78 Q-NDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFAD-QPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVI-ND 154 (170)
T ss_dssp H-HHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHH-HC
T ss_pred H-HHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhh-HHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHH-cC
Confidence 6 5778 899999999999999999999999999998644 467999999999999886 6889999999999 68
Q ss_pred HHHHHHHHHHH
Q 012492 411 TDELKRMSENA 421 (462)
Q Consensus 411 ~~~~~~m~~~a 421 (462)
++.++++.+.+
T Consensus 155 ~~~~~~a~~~~ 165 (170)
T 2o6l_A 155 PSYKENVMKLS 165 (170)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 87666555443
No 47
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=99.68 E-value=4.3e-15 Score=152.43 Aligned_cols=156 Identities=15% Similarity=0.171 Sum_probs=111.6
Q ss_pred HHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH------HHHHHHhhccCCCCeEE
Q 012492 258 LRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR------TLASTLQSEEWKIPVKV 331 (462)
Q Consensus 258 ~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~------~l~~~~~~~~~~~~V~~ 331 (462)
..+.+.-.+++++|++++|+.+.....+ +.++++.|.+ .+.+++|++|.+. .+.+.+.+ ....|+.+
T Consensus 285 ~~~wld~~~~~~vv~vs~GS~~~~~~~~-~~~~~~~l~~-----~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~v 357 (482)
T 2pq6_A 285 CLDWLESKEPGSVVYVNFGSTTVMTPEQ-LLEFAWGLAN-----CKKSFLWIIRPDLVIGGSVIFSSEFTN-EIADRGLI 357 (482)
T ss_dssp HHHHHTTSCTTCEEEEECCSSSCCCHHH-HHHHHHHHHH-----TTCEEEEECCGGGSTTTGGGSCHHHHH-HHTTTEEE
T ss_pred HHHHHhcCCCCceEEEecCCcccCCHHH-HHHHHHHHHh-----cCCcEEEEEcCCccccccccCcHhHHH-hcCCCEEE
Confidence 3444443345678999999987644444 4555556643 2468899887541 02121111 12468999
Q ss_pred eccchhHHHHHHh--cchheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHH-HCCceeeeC---CHHHHHHHHHH
Q 012492 332 RGFETQMEKWMGA--CDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVV-DNGAGVFTR---SPKETARIVTE 405 (462)
Q Consensus 332 ~g~~~~~~~l~~~--aD~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~-~~G~g~~~~---~~~~la~~i~~ 405 (462)
.+|.+++ ++|+. +++||+++|.+|++||+++|+|+|+.|...+| ..|+..++ +.|+|+.+. +.+++.++|.+
T Consensus 358 ~~~~pq~-~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~P~~~dQ-~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ 435 (482)
T 2pq6_A 358 ASWCPQD-KVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQ-PTDCRFICNEWEIGMEIDTNVKREELAKLINE 435 (482)
T ss_dssp ESCCCHH-HHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTH-HHHHHHHHHTSCCEEECCSSCCHHHHHHHHHH
T ss_pred EeecCHH-HHhcCCCCCEEEecCCcchHHHHHHcCCCEEecCcccch-HHHHHHHHHHhCEEEEECCCCCHHHHHHHHHH
Confidence 9999887 58865 55699999999999999999999999986554 56999997 689999886 68899999999
Q ss_pred HhcCCHHHHHHHHHHHHhh
Q 012492 406 WFSTKTDELKRMSENALKL 424 (462)
Q Consensus 406 ll~~d~~~~~~m~~~a~~~ 424 (462)
+| +|++ .++|+++++++
T Consensus 436 ll-~~~~-~~~~r~~a~~l 452 (482)
T 2pq6_A 436 VI-AGDK-GKKMKQKAMEL 452 (482)
T ss_dssp HH-TSHH-HHHHHHHHHHH
T ss_pred HH-cCCc-HHHHHHHHHHH
Confidence 99 6875 34455555444
No 48
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.64 E-value=8.3e-16 Score=134.14 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=103.6
Q ss_pred EEEEEeCCCCC-ccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCCCCeEEeccc--hhHHHHHH
Q 012492 270 AVLLMGGGEGM-GPVKETAMALGESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWKIPVKVRGFE--TQMEKWMG 343 (462)
Q Consensus 270 ~iLv~gG~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~ 343 (462)
.++++.|+... ++...+++++ +.+.+ .+++++++ +|.+. .+.+.+++++. ++.+ |++ +++.++|+
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~-~~l~~----~~~~~l~i-~G~g~~~~~~~~~~~~~~~--~v~~-g~~~~~~~~~~~~ 73 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAV-ALSKY----KQDIVLLL-KGKGPDEKKIKLLAQKLGV--KAEF-GFVNSNELLEILK 73 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHH-HTCTT----GGGEEEEE-ECCSTTHHHHHHHHHHHTC--EEEC-CCCCHHHHHHHHT
T ss_pred eEEEEEeccchhcCHHHHHHHH-HHhcc----CCCeEEEE-EeCCccHHHHHHHHHHcCC--eEEE-eecCHHHHHHHHH
Confidence 34455555554 5555555544 55643 36777655 45543 35555565555 7888 996 78999999
Q ss_pred hcchheecCC----hhhHHHHHHhCC-CEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHH
Q 012492 344 ACDCIITKAG----PGTIAEALIRGL-PIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMS 418 (462)
Q Consensus 344 ~aD~vV~~sg----~~t~~EAla~G~-PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~ 418 (462)
.||++|.+|. |.+++|||++|+ |+|+++..++... .+.+.+..+...++++++++|.+++ +|++.+++|+
T Consensus 74 ~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~i~~l~-~~~~~~~~~~ 148 (166)
T 3qhp_A 74 TCTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQ----FALDERSLFEPNNAKDLSAKIDWWL-ENKLERERMQ 148 (166)
T ss_dssp TCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGG----GCSSGGGEECTTCHHHHHHHHHHHH-HCHHHHHHHH
T ss_pred hCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhh----hccCCceEEcCCCHHHHHHHHHHHH-hCHHHHHHHH
Confidence 9999998873 899999999998 9999554332211 2222334444468999999999999 6999999999
Q ss_pred HHHHhhcCCcHHHHHHH
Q 012492 419 ENALKLAQPEAVVDIVK 435 (462)
Q Consensus 419 ~~a~~~~~~~~~~~ia~ 435 (462)
++++++++.++|+++++
T Consensus 149 ~~~~~~~~~~s~~~~~~ 165 (166)
T 3qhp_A 149 NEYAKSALNYTLENSVI 165 (166)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHHCChhhhhc
Confidence 99999988889988875
No 49
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=99.63 E-value=3.9e-14 Score=143.22 Aligned_cols=165 Identities=15% Similarity=0.097 Sum_probs=117.3
Q ss_pred cEEEcCCCCChhhhcc-cCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH
Q 012492 236 QIRVFGLPIRPSFVRA-VISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR 314 (462)
Q Consensus 236 ~i~v~g~pv~~~~~~~-~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~ 314 (462)
++..+|.-. ...... ..+.++..+.++..+++++|++++|+.+..... .+.+++..|.+ .+.+++|++|...
T Consensus 241 ~v~~vGPl~-~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~-~~~el~~~l~~-----~~~~flw~~~~~~ 313 (454)
T 3hbf_A 241 LLLNVGPFN-LTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPH-ELTALAESLEE-----CGFPFIWSFRGDP 313 (454)
T ss_dssp CEEECCCHH-HHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHH-HHHHHHHHHHH-----HCCCEEEECCSCH
T ss_pred CEEEECCcc-cccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHH-HHHHHHHHHHh-----CCCeEEEEeCCcc
Confidence 678887422 111111 112344566666556778999999998865433 34556666643 2457899998764
Q ss_pred H--HHHHHhhccCCCCeEEeccchhHHHHHHhcc--hheecCChhhHHHHHHhCCCEEEecCCCCccccchHHHHHC-Cc
Q 012492 315 T--LASTLQSEEWKIPVKVRGFETQMEKWMGACD--CIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN-GA 389 (462)
Q Consensus 315 ~--l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD--~vV~~sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~-G~ 389 (462)
. +.+...+ ....|+.+.+|.++ ..+++.++ +||+++|.+|++||+++|+|+|+.|...+ |..|+..+++. |+
T Consensus 314 ~~~lp~~~~~-~~~~~~~vv~w~Pq-~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~D-Q~~Na~~v~~~~g~ 390 (454)
T 3hbf_A 314 KEKLPKGFLE-RTKTKGKIVAWAPQ-VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGD-QGLNTILTESVLEI 390 (454)
T ss_dssp HHHSCTTHHH-HTTTTEEEESSCCH-HHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTSCS
T ss_pred hhcCCHhHHh-hcCCceEEEeeCCH-HHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCccccc-HHHHHHHHHHhhCe
Confidence 1 1111111 13468999999987 48999999 89999999999999999999999998655 55699999985 99
Q ss_pred eeeeC----CHHHHHHHHHHHhcCCH
Q 012492 390 GVFTR----SPKETARIVTEWFSTKT 411 (462)
Q Consensus 390 g~~~~----~~~~la~~i~~ll~~d~ 411 (462)
|+.+. +.+++.++|.++| +++
T Consensus 391 Gv~l~~~~~~~~~l~~av~~ll-~~~ 415 (454)
T 3hbf_A 391 GVGVDNGVLTKESIKKALELTM-SSE 415 (454)
T ss_dssp EEECGGGSCCHHHHHHHHHHHH-SSH
T ss_pred eEEecCCCCCHHHHHHHHHHHH-CCC
Confidence 98875 4789999999999 565
No 50
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.63 E-value=8.9e-15 Score=142.57 Aligned_cols=236 Identities=15% Similarity=0.141 Sum_probs=156.8
Q ss_pred hhCCCEEEECCcccchHH--HHHHHHcCCCCCCeEEEEecCCCCC----C------cccccCCCcEEEEcCHHHHHHHHH
Q 012492 162 EYKPDIIISVHPLMQHIP--LWVLKWQGLQKKVIFVTVITDLNTC----H------PTWFHPRVNRCYCPSKEVAKRASY 229 (462)
Q Consensus 162 ~~kPDvVi~~~~~~~~~~--~~~~~~~~~~~~iP~v~~~~d~~~~----~------~~~~~~~~d~~i~~s~~~~~~l~~ 229 (462)
-.++|+||..+|...... ....++.+. .++|+|..+||..+. + ..|+++.+|.++++|+.+++.+.+
T Consensus 72 ~~~~DvIi~q~P~~~~~~~~~~~~~~lk~-~~~k~i~~ihDl~pl~~~~~~~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~ 150 (339)
T 3rhz_A 72 LRHGDVVIFQTPTWNTTEFDEKLMNKLKL-YDIKIVLFIHDVVPLMFSGNFYLMDRTIAYYNKADVVVAPSQKMIDKLRD 150 (339)
T ss_dssp CCTTCEEEEEECCSSCHHHHHHHHHHHTT-SSCEEEEEESCCHHHHCGGGGGGHHHHHHHHTTCSEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcchhhHHHHHHHHHHh-cCCEEEEEecccHHhhCccchhhHHHHHHHHHHCCEEEECCHHHHHHHHH
Confidence 346899999888653321 122232211 389999999997531 1 135578899999999999999999
Q ss_pred cCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEE
Q 012492 230 FGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIII 309 (462)
Q Consensus 230 ~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv 309 (462)
.|++..++.+.++.-.. .. .+ ...+.+. .++++.|+.+.. + .+..+ .+++++++
T Consensus 151 ~G~~~~ki~~~~~~~~~---~~-~~-------~~~~~~~-~~i~yaG~l~k~---~----~L~~l------~~~~~f~i- 204 (339)
T 3rhz_A 151 FGMNVSKTVVQGMWDHP---TQ-AP-------MFPAGLK-REIHFPGNPERF---S----FVKEW------KYDIPLKV- 204 (339)
T ss_dssp TTCCCSEEEECCSCCCC---CC-CC-------CCCCEEE-EEEEECSCTTTC---G----GGGGC------CCSSCEEE-
T ss_pred cCCCcCceeecCCCCcc---Cc-cc-------ccccCCC-cEEEEeCCcchh---h----HHHhC------CCCCeEEE-
Confidence 99987888777653111 00 00 1112223 456677777731 1 11222 25677554
Q ss_pred ccCCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchhee-cCC----------hhhHHHHHHhCCCEEEecCCCCc
Q 012492 310 CGRNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIIT-KAG----------PGTIAEALIRGLPIILNDYIPGQ 376 (462)
Q Consensus 310 ~G~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~-~sg----------~~t~~EAla~G~PvI~~~~~~~~ 376 (462)
+|++.+. .+. ||+|.|++ +++..+|+.+|+.+. .++ |+.+.|+|++|+|||+.+..
T Consensus 205 vG~G~~~-------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~--- 273 (339)
T 3rhz_A 205 YTWQNVE-------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGI--- 273 (339)
T ss_dssp EESCCCC-------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTC---
T ss_pred EeCCccc-------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccCh---
Confidence 5666431 234 99999998 789999987776333 233 67799999999999998753
Q ss_pred cccchHHHHHCCceeeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcH-----HHHHHHHHHHH
Q 012492 377 EKGNVPYVVDNGAGVFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQPEA-----VVDIVKDIHDL 440 (462)
Q Consensus 377 ~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~~~-----~~~ia~~i~~l 440 (462)
.+.+.+.+.++|+.+++.+++++++..+ +++.+++|++++++.++..+ ...+.+.+.++
T Consensus 274 --~~~~~v~~~~~G~~~~~~~e~~~~i~~l---~~~~~~~m~~na~~~a~~~~~~~f~k~~l~~~~~~~ 337 (339)
T 3rhz_A 274 --ANQELIENNGLGWIVKDVEEAIMKVKNV---NEDEYIELVKNVRSFNPILRKGFFTRRLLTESVFQA 337 (339)
T ss_dssp --TTTHHHHHHTCEEEESSHHHHHHHHHHC---CHHHHHHHHHHHHHHTHHHHTTHHHHHHHHHHHHHH
T ss_pred --hHHHHHHhCCeEEEeCCHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3566788889999999988888888874 35779999999988865433 33444444443
No 51
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=99.60 E-value=4.1e-14 Score=144.88 Aligned_cols=175 Identities=16% Similarity=0.144 Sum_probs=112.1
Q ss_pred CcEEEcCCCCChhhhc-ccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCC
Q 012492 235 SQIRVFGLPIRPSFVR-AVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRN 313 (462)
Q Consensus 235 ~~i~v~g~pv~~~~~~-~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~ 313 (462)
.++..+|......... .....+.+.+.+.-.+++++|++++|+.+.... +.+.++++.|.+ .+.+++|+++..
T Consensus 234 ~~v~~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~-~~~~~~~~al~~-----~~~~~lw~~~~~ 307 (480)
T 2vch_A 234 PPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTC-EQLNELALGLAD-----SEQRFLWVIRSP 307 (480)
T ss_dssp CCEEECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCH-HHHHHHHHHHHH-----TTCEEEEEECCC
T ss_pred CcEEEEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCH-HHHHHHHHHHHh-----cCCcEEEEECCc
Confidence 3688888543221100 001122344444333456889999999875443 444556666644 346788887753
Q ss_pred HHH----------HHHHhhccCCCC---------eEEeccchhHHHHHHhcc--hheecCChhhHHHHHHhCCCEEEecC
Q 012492 314 RTL----------ASTLQSEEWKIP---------VKVRGFETQMEKWMGACD--CIITKAGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 314 ~~l----------~~~~~~~~~~~~---------V~~~g~~~~~~~l~~~aD--~vV~~sg~~t~~EAla~G~PvI~~~~ 372 (462)
... ...+.+ .+..+ +.+.+|.+++ ++|+.++ +||+++|.+|++||+++|+|+|+.|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~-~lp~~~~~~~~~~g~~v~~w~Pq~-~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P~ 385 (480)
T 2vch_A 308 SGIANSSYFDSHSQTDPLT-FLPPGFLERTKKRGFVIPFWAPQA-QVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPL 385 (480)
T ss_dssp CSSTTTTTTCC--CSCGGG-GSCTTHHHHTTTTEEEEESCCCHH-HHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCC
T ss_pred cccccccccccccccchhh-hcCHHHHHHhCCCeEEEeCccCHH-HHhCCCCcCeEEecccchhHHHHHHcCCCEEeccc
Confidence 200 000000 12222 4555699876 8998888 79999999999999999999999998
Q ss_pred CCCccccchHHH-HHCCceeeeC-------CHHHHHHHHHHHhcC---CHHHHHHHHH
Q 012492 373 IPGQEKGNVPYV-VDNGAGVFTR-------SPKETARIVTEWFST---KTDELKRMSE 419 (462)
Q Consensus 373 ~~~~~~~n~~~l-~~~G~g~~~~-------~~~~la~~i~~ll~~---d~~~~~~m~~ 419 (462)
..+| ..|+..+ .+.|+|+.+. +.+++.++|.++| + +++.|++..+
T Consensus 386 ~~DQ-~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl-~~~~~~~~r~~a~~ 441 (480)
T 2vch_A 386 YAEQ-KMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLM-EGEEGKGVRNKMKE 441 (480)
T ss_dssp STTH-HHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHH-TSTHHHHHHHHHHH
T ss_pred cccc-hHHHHHHHHHhCeEEEeecccCCccCHHHHHHHHHHHh-cCcchHHHHHHHHH
Confidence 6554 5699997 5889998763 4789999999999 5 4455544443
No 52
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.60 E-value=4.6e-13 Score=135.55 Aligned_cols=276 Identities=9% Similarity=0.006 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCC------Ccc-c------ccCCCc
Q 012492 148 MAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTC------HPT-W------FHPRVN 214 (462)
Q Consensus 148 ~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~------~~~-~------~~~~~d 214 (462)
.+..++.++.+.++...-|+|.++.+.....+.. .|..+ ++.++..++|-..+. .+. | ....+|
T Consensus 133 vN~~fA~~i~~~~~~~~~D~VwVhDYhL~llp~~-lR~~~--~~~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~~D 209 (496)
T 3t5t_A 133 FTRDFADAILKSSAQSADPVYLVHDYQLVGVPAL-LREQR--PDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPAT 209 (496)
T ss_dssp HHHHHHHHHHHHTTTCSSCEEEEESGGGTTHHHH-HHHHC--TTSCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccCCCCEEEEeCccHhHHHHH-HHhhC--CCCeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHHHhCC
Confidence 4555666554433322357888877766665543 34333 477887777643321 111 1 113578
Q ss_pred EEEEcCHHHHHHHHH-----c-CCCC-------------CcEEEcCCCCChhhhcccC--ChHHHHHHcCCCCCCcEEEE
Q 012492 215 RCYCPSKEVAKRASY-----F-GLEV-------------SQIRVFGLPIRPSFVRAVI--SKDNLRLELQMDPILPAVLL 273 (462)
Q Consensus 215 ~~i~~s~~~~~~l~~-----~-gi~~-------------~~i~v~g~pv~~~~~~~~~--~~~~~r~~l~l~~~~~~iLv 273 (462)
.+...++...+.+.. . |++. .+|.+++++|++..+.+.. .+.++|++++ ++++||.
T Consensus 210 ligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~---~~~lIl~ 286 (496)
T 3t5t_A 210 TIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD---GHRLVVH 286 (496)
T ss_dssp EEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT---TSEEEEE
T ss_pred EEEEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC---CceEEEE
Confidence 999988877766533 2 3221 2567899999987665321 1256788886 4566777
Q ss_pred EeCCCCCccHHHHHHHHHHhhhcccCCCCCc---eEEEEcc----CCH---HHHHHHhhc----cC---CCCeEEeccc-
Q 012492 274 MGGGEGMGPVKETAMALGESLLDKETGRPIG---QLIIICG----RNR---TLASTLQSE----EW---KIPVKVRGFE- 335 (462)
Q Consensus 274 ~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~---~~lvv~G----~~~---~l~~~~~~~----~~---~~~V~~~g~~- 335 (462)
+|+....|++...++++ +.+.+ +|++ .++++++ ++. ++++.++++ +. ..+|.|.|.+
T Consensus 287 VgRLd~~KGi~~lL~Af-~ll~~----~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~ 361 (496)
T 3t5t_A 287 SGRTDPIKNAERAVRAF-VLAAR----GGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDND 361 (496)
T ss_dssp EEESSGGGCHHHHHHHH-HHHHH----TSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred cccCccccCHHHHHHHH-HHHHh----CcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCC
Confidence 77666678888888887 65554 4553 3555543 232 234444432 11 1179999885
Q ss_pred -hhHHHHHHhcchheecCC----hhhHHHHHHhC---CCEEEecCCCCccccchHHHHHCCceeeeC--CHHHHHHHHHH
Q 012492 336 -TQMEKWMGACDCIITKAG----PGTIAEALIRG---LPIILNDYIPGQEKGNVPYVVDNGAGVFTR--SPKETARIVTE 405 (462)
Q Consensus 336 -~~~~~l~~~aD~vV~~sg----~~t~~EAla~G---~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~--~~~~la~~i~~ 405 (462)
+++..+|+.||+++.+|- +.+++|||+|| .|+|++...+ .+..+.+ .|++++ |+++++++|.+
T Consensus 362 ~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG-----a~~~l~~--~allVnP~D~~~lA~AI~~ 434 (496)
T 3t5t_A 362 VNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCG-----AAEVLGE--YCRSVNPFDLVEQAEAISA 434 (496)
T ss_dssp HHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT-----THHHHGG--GSEEECTTBHHHHHHHHHH
T ss_pred HHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCC-----CHHHhCC--CEEEECCCCHHHHHHHHHH
Confidence 689999999999998873 89999999996 8899887643 3344533 345554 79999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 012492 406 WFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLA 441 (462)
Q Consensus 406 ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~ 441 (462)
+|.+.++.++++.++.++.+..+.+..-++.+++.+
T Consensus 435 aL~m~~~er~~r~~~~~~~V~~~d~~~W~~~fl~~L 470 (496)
T 3t5t_A 435 ALAAGPRQRAEAAARRRDAARPWTLEAWVQAQLDGL 470 (496)
T ss_dssp HHHCCHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 996667888888899999998887766666655544
No 53
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.59 E-value=1.8e-13 Score=141.23 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=75.5
Q ss_pred hHHHHHHhcchheecC----ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHC-------Cceeee-----CCHHHHH
Q 012492 337 QMEKWMGACDCIITKA----GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDN-------GAGVFT-----RSPKETA 400 (462)
Q Consensus 337 ~~~~l~~~aD~vV~~s----g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~-------G~g~~~-----~~~~~la 400 (462)
++.++|+.||++|.|| .|.+++|||+||+|+|+++.++. ...+.+. +.|+.+ .++++++
T Consensus 511 d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~-----~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~a 585 (725)
T 3nb0_A 511 DYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGF-----GSYMEDLIETNQAKDYGIYIVDRRFKAPDESV 585 (725)
T ss_dssp CHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHH-----HHHHHTTSCHHHHHHTTEEEECCSSSCHHHHH
T ss_pred HHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCCh-----hhhhhccccccCCCCceEEEeCCCCCCHHHHH
Confidence 5899999999999998 39999999999999999987432 1122221 245544 1355555
Q ss_pred HHH----HHHhcCCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 012492 401 RIV----TEWFSTKTDELKRMSENALKLAQPEAVVDIVKDIHDLAA 442 (462)
Q Consensus 401 ~~i----~~ll~~d~~~~~~m~~~a~~~~~~~~~~~ia~~i~~l~~ 442 (462)
++| ..++..+++.+++|++++++.++.++|+++++.++++.+
T Consensus 586 eaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye 631 (725)
T 3nb0_A 586 EQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQ 631 (725)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444 444434788899999999999999999999998887553
No 54
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.57 E-value=2.5e-14 Score=126.43 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=104.3
Q ss_pred cCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH--HHHHHHh--hccCCCCeEEeccch-
Q 012492 262 LQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR--TLASTLQ--SEEWKIPVKVRGFET- 336 (462)
Q Consensus 262 l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~--~l~~~~~--~~~~~~~V~~~g~~~- 336 (462)
+++++++++++++|+....++...+++++ +.+ ++++++++++... .+.+.++ ++++.++|.+.|+++
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~-~~l-------~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~ 88 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVF-KKL-------QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSE 88 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHH-HHC-------TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCH
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHH-HhC-------CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCH
Confidence 45666777776666554455555555544 444 3567665543332 3666666 667888999999995
Q ss_pred -hHHHHHHhcchheecC----ChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCceeee-CCHHHHHHHHHHHhcCC
Q 012492 337 -QMEKWMGACDCIITKA----GPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFT-RSPKETARIVTEWFSTK 410 (462)
Q Consensus 337 -~~~~l~~~aD~vV~~s----g~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~-~~~~~la~~i~~ll~~d 410 (462)
++..+|+.||++|.++ .+.+++|||++|+|+|+++.+. ..+.+.+.+.|+++ .++++++++|.+++ +|
T Consensus 89 ~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~-----~~e~i~~~~~g~~~~~d~~~l~~~i~~l~-~~ 162 (177)
T 2f9f_A 89 EELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGG-----FKETVINEKTGYLVNADVNEIIDAMKKVS-KN 162 (177)
T ss_dssp HHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHH-----HHHHCCBTTTEEEECSCHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCC-----HHHHhcCCCccEEeCCCHHHHHHHHHHHH-hC
Confidence 4999999999999865 3889999999999999998521 22233334466665 68999999999999 57
Q ss_pred HHH-HHHHHHHHHh
Q 012492 411 TDE-LKRMSENALK 423 (462)
Q Consensus 411 ~~~-~~~m~~~a~~ 423 (462)
++. ++++++++++
T Consensus 163 ~~~~~~~~~~~a~~ 176 (177)
T 2f9f_A 163 PDKFKKDCFRRAKE 176 (177)
T ss_dssp TTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 765 6777766654
No 55
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.45 E-value=6e-14 Score=127.49 Aligned_cols=138 Identities=23% Similarity=0.223 Sum_probs=100.8
Q ss_pred cCCCCCCcEEEEEeCCCCCccHHHHHHHHH-----HhhhcccCCCCCceEEEEccCCHH-----HHHHHh--------h-
Q 012492 262 LQMDPILPAVLLMGGGEGMGPVKETAMALG-----ESLLDKETGRPIGQLIIICGRNRT-----LASTLQ--------S- 322 (462)
Q Consensus 262 l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~-----~~l~~~~~~~~~~~~lvv~G~~~~-----l~~~~~--------~- 322 (462)
++.++++++|||++|+.. .+++++..++ +.|.+ ...+++++.+|.+.. +...+. .
T Consensus 22 ~~~~~~~~~VlVtgGS~~--~~n~li~~vl~~~~l~~L~~----~~~~~vv~q~G~~~~~~~~~~~~~~~~~~~~~l~p~ 95 (224)
T 2jzc_A 22 LEGIIEEKALFVTCGATV--PFPKLVSCVLSDEFCQELIQ----YGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPI 95 (224)
T ss_dssp --CCCCSCCEEEECCSCC--SCHHHHHHHTSHHHHHHHHT----TTCCCEEECCCSSSCCCCCSHHHHHTCEECSCCCSS
T ss_pred cCCCCCCCEEEEEcCCch--HHHHHHHHHHHHHHHHHHhc----CCCeEEEEEECCCchhhHHHHHHhhhcccccccccc
Confidence 556667889999999974 3555555442 55543 122678888998642 112220 0
Q ss_pred --------------ccCCCCeEEeccchhHHHHHH-hcchheecCChhhHHHHHHhCCCEEEecCC---CCccccchHHH
Q 012492 323 --------------EEWKIPVKVRGFETQMEKWMG-ACDCIITKAGPGTIAEALIRGLPIILNDYI---PGQEKGNVPYV 384 (462)
Q Consensus 323 --------------~~~~~~V~~~g~~~~~~~l~~-~aD~vV~~sg~~t~~EAla~G~PvI~~~~~---~~~~~~n~~~l 384 (462)
.....++...+|.++|.++|+ .||++|+++|.+|++|++++|+|+|+.|.+ .++|..|++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~AdlvIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l 175 (224)
T 2jzc_A 96 DQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKF 175 (224)
T ss_dssp CTTCTTCSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSCEEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHH
T ss_pred ccccccccccccccccCCceEEEeeccchHHHHHHhcCCEEEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHH
Confidence 001225677899999999999 999999999999999999999999999985 35678899999
Q ss_pred HHCCceeeeCCHHHHHHHHHHH
Q 012492 385 VDNGAGVFTRSPKETARIVTEW 406 (462)
Q Consensus 385 ~~~G~g~~~~~~~~la~~i~~l 406 (462)
.+.|+++.+ +++.+.++|.++
T Consensus 176 ~~~G~~~~~-~~~~L~~~i~~l 196 (224)
T 2jzc_A 176 VELGYVWSC-APTETGLIAGLR 196 (224)
T ss_dssp HHHSCCCEE-CSCTTTHHHHHH
T ss_pred HHCCCEEEc-CHHHHHHHHHHH
Confidence 999998766 667787878776
No 56
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.13 E-value=3.4e-09 Score=109.05 Aligned_cols=270 Identities=7% Similarity=-0.035 Sum_probs=158.5
Q ss_pred HHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHHHHHHHcCC
Q 012492 153 AKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVAKRASYFGL 232 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~~~l~~~gi 232 (462)
...+.+.+++.++||+|--...+......++.. .-.|+-.....+.. .--.+..|++++-.... . .+..+
T Consensus 338 ~~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~----RpAPVQvs~lGyp~---TTGl~~iDY~i~D~~~~-~--~~~~y 407 (631)
T 3q3e_A 338 LEFIRSVCESNGAAIFYMPSIGMDMTTIFASNT----RLAPIQAIALGHPA---TTHSDFIEYVIVEDDYV-G--SEECF 407 (631)
T ss_dssp HHHHHHHHHHHTCSEEEESCCSSSHHHHHHTTS----CCSSEEEEECSSCS---CCCCTTCCEEEEEGGGC-C--CGGGC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCchhHHHHhC----CCchheEeccCCCc---ccCcccCCEEEeCCCCC-C--cccCc
Confidence 345668899999999987666555544444322 25676433322210 11134568777532110 0 01122
Q ss_pred CCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCC-CcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEE-Ec
Q 012492 233 EVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPI-LPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLII-IC 310 (462)
Q Consensus 233 ~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~-~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lv-v~ 310 (462)
.+++..++...-. + .+.... -.+..++++.+ ..+++..... ..|...+.+...++.+.+ .|+..+++ ..
T Consensus 408 -sEklirLP~~~~~-~-~p~~~~-p~r~~~~lp~~~G~v~Fg~fn~-~~Ki~p~~l~~WarIL~~----vP~s~L~l~~~ 478 (631)
T 3q3e_A 408 -SETLLRLPKDALP-Y-VPSALA-PEKVDYLLRENPEVVNIGIAST-TMKLNPYFLEALKAIRDR----AKVKVHFHFAL 478 (631)
T ss_dssp -SSEEEEECTTSSC-C-CCCTTC-CSSCCCCCCSCCSEEEEEEEEC-STTCCHHHHHHHHHHHHH----CSSEEEEEEEE
T ss_pred -eeeEEECCCCccc-c-CCcccC-CccccccCCcCCCeEEEEECCc-cccCCHHHHHHHHHHHHh----CCCcEEEEEec
Confidence 2567666642111 1 110000 01234677654 2333333322 345556666655555543 36644322 34
Q ss_pred cCC----HHHHHHHhhccCCCCeEEeccc--hhHHHHHHhcchheec---CChhhHHHHHHhCCCEEEecCCCCccccch
Q 012492 311 GRN----RTLASTLQSEEWKIPVKVRGFE--TQMEKWMGACDCIITK---AGPGTIAEALIRGLPIILNDYIPGQEKGNV 381 (462)
Q Consensus 311 G~~----~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~---sg~~t~~EAla~G~PvI~~~~~~~~~~~n~ 381 (462)
|.. ..+.+...+.++.+++.|.|.. .+...+|+.||+++-+ +||+|++|||++|+|||+.+.........+
T Consensus 479 g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvga 558 (631)
T 3q3e_A 479 GQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDE 558 (631)
T ss_dssp SSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHH
T ss_pred CCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHH
Confidence 532 2344445556777899999987 4566888999999965 368999999999999999875432223334
Q ss_pred HHHHHCCce--eeeCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-----cHHHHHHHHHHHHHh
Q 012492 382 PYVVDNGAG--VFTRSPKETARIVTEWFSTKTDELKRMSENALKLAQP-----EAVVDIVKDIHDLAA 442 (462)
Q Consensus 382 ~~l~~~G~g--~~~~~~~~la~~i~~ll~~d~~~~~~m~~~a~~~~~~-----~~~~~ia~~i~~l~~ 442 (462)
..+...|.. .+..+.++.++...+|. +|++.+++|+++.++.... ....++.+.++++++
T Consensus 559 SlL~~~GLpE~LIA~d~eeYv~~Av~La-~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~ 625 (631)
T 3q3e_A 559 GLFKRLGLPEWLIANTVDEYVERAVRLA-ENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLN 625 (631)
T ss_dssp HHHHHTTCCGGGEESSHHHHHHHHHHHH-HCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHH
T ss_pred HHHHhcCCCcceecCCHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHH
Confidence 556777874 36788999999999999 7999999999998776432 123455555555443
No 57
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=98.56 E-value=8.3e-07 Score=86.43 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=67.1
Q ss_pred hHHHHHHcCCCCCCcEEEEEeCC-CCC-ccH-HHHHHHHHHhhhcccCCCCCceEEEEccCCH-HHHHHHhhc-c--CCC
Q 012492 255 KDNLRLELQMDPILPAVLLMGGG-EGM-GPV-KETAMALGESLLDKETGRPIGQLIIICGRNR-TLASTLQSE-E--WKI 327 (462)
Q Consensus 255 ~~~~r~~l~l~~~~~~iLv~gG~-~~~-~~~-~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~-~l~~~~~~~-~--~~~ 327 (462)
.+..++.++++.++++|++..|+ .+. +.. .+.+.++++.|.+ . ++++++++|..+ +..+.+.+. + ...
T Consensus 167 ~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~----~-~~~vvl~g~~~e~~~~~~i~~~~~~~~~~ 241 (348)
T 1psw_A 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID----E-GYQVVLFGSAKDHEAGNEILAALNTEQQA 241 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH----T-TCEEEECCCGGGHHHHHHHHTTSCHHHHT
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHH----C-CCeEEEEeChhhHHHHHHHHHhhhhcccc
Confidence 44566778887667777777666 332 221 2344456666654 1 466665544433 122333321 1 012
Q ss_pred Ce-EEeccc--hhHHHHHHhcchheecCChhhHHHHHHhCCCEEEecCC
Q 012492 328 PV-KVRGFE--TQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 328 ~V-~~~g~~--~~~~~l~~~aD~vV~~sg~~t~~EAla~G~PvI~~~~~ 373 (462)
++ .+.|.. .++..+++.||++|+...|. +..|.++|+|+|+.-.+
T Consensus 242 ~~~~l~g~~sl~e~~ali~~a~l~I~~Dsg~-~HlAaa~g~P~v~lfg~ 289 (348)
T 1psw_A 242 WCRNLAGETQLDQAVILIAACKAIVTNDSGL-MHVAAALNRPLVALYGP 289 (348)
T ss_dssp TEEECTTTSCHHHHHHHHHTSSEEEEESSHH-HHHHHHTTCCEEEEESS
T ss_pred ceEeccCcCCHHHHHHHHHhCCEEEecCCHH-HHHHHHcCCCEEEEECC
Confidence 34 456654 68999999999999984433 33499999999987543
No 58
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=98.56 E-value=3.3e-05 Score=75.28 Aligned_cols=266 Identities=12% Similarity=0.078 Sum_probs=132.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCC--CchhhHHHHHHHHhhhHHHHHHhhcCCcc
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGW--PLNDMERSYKFMVKHVQLWKVAFHSTSPK 138 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~--~~~~~~~~y~~~~~~~~l~~~~~~~~~~~ 138 (462)
.+|||||+..+. .|..-.+..+.++|++++|+....+++.-. ..+. ....+++ .+ .+. .+
T Consensus 7 ~~~~iLvi~~~~-lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~--~~~l~~~~p~vd~----------vi--~~~---~~ 68 (349)
T 3tov_A 7 DYKRIVVTFLMH-LGDVILTTPFLEVLRKAAPHSHITYVIDEK--LQQVMEYNPNIDE----------LI--VVD---KK 68 (349)
T ss_dssp TTCEEEEECCCC-HHHHHTTHHHHHHHHHHCTTSEEEEEEEGG--GGGGTSSCTTCSE----------EE--EEC---CS
T ss_pred CCCEEEEEecCc-ccHHHHHHHHHHHHHHHCCCCEEEEEECcc--hhHHHhcCCCccE----------EE--EeC---cc
Confidence 468999998764 799999999999999998765444444211 0000 0000000 00 001 01
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCC-CEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEE
Q 012492 139 WIHSCYLAAMAAYYAKEVEAGLMEYKP-DIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCY 217 (462)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~l~~~kP-DvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i 217 (462)
... .......++.+.+++.++ |++|..+..... ..+++.. ++|...-... . ...++ .+..+
T Consensus 69 ~~~------~~~~~~~~l~~~Lr~~~y~D~vidl~~~~rs--~~l~~~~----~a~~riG~~~-~--~~~~~---~~~~~ 130 (349)
T 3tov_A 69 GRH------NSISGLNEVAREINAKGKTDIVINLHPNERT--SYLAWKI----HAPITTGMSH-F--LFRPF---MTKYT 130 (349)
T ss_dssp SHH------HHHHHHHHHHHHHHHHCCCCEEEECCCSHHH--HHHHHHH----CCSEEEECCC-T--TTGGG---CSEEC
T ss_pred ccc------ccHHHHHHHHHHHhhCCCCeEEEECCCChHH--HHHHHHh----CCCeEEecCC-C--Ccccc---ccccc
Confidence 100 011223355667889999 999988765322 2233332 4554321111 0 01111 11111
Q ss_pred Ec----CHH---HHHHHHHcCCCCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCC-CCccH-HHHHH
Q 012492 218 CP----SKE---VAKRASYFGLEVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGE-GMGPV-KETAM 288 (462)
Q Consensus 218 ~~----s~~---~~~~l~~~gi~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~-~~~~~-~~~l~ 288 (462)
.. .+. ..+.+...|++...-.....++.++.. ...+.+..++|+++++++|++..|+. ..+.. .+.+.
T Consensus 131 ~~~~~~~h~v~r~~~ll~~lg~~~~~~~~~~l~~~~~~~---~~~~~~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~~ 207 (349)
T 3tov_A 131 RLDRKTRHAADMYINVLEQLGVTDTSNSGLHIEICEEWR---CQAQEFYSSHGLTDTDILIGFNIGSAVPEKRWPAERFA 207 (349)
T ss_dssp CCCTTTSCHHHHHHHHHHHTTCCCCCCCCCCCCCCHHHH---HHHHHHHHHTTCCTTCCEEEEECCCSSGGGCCCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHhCCCccCCCceeeeCCHHHH---HHHHHHHHHcCCCCCCCEEEEeCCCCCccCCCCHHHHH
Confidence 10 111 122223356642100000001111100 01123344567877778887765553 33322 34455
Q ss_pred HHHHhhhcccCCCCCceEEEEccCCH-HHHHHHhh-ccCCCCeEEeccc--hhHHHHHHhcchheec-CChhhHHHHHHh
Q 012492 289 ALGESLLDKETGRPIGQLIIICGRNR-TLASTLQS-EEWKIPVKVRGFE--TQMEKWMGACDCIITK-AGPGTIAEALIR 363 (462)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~lvv~G~~~-~l~~~~~~-~~~~~~V~~~g~~--~~~~~l~~~aD~vV~~-sg~~t~~EAla~ 363 (462)
++++.|.+. ++++++++|+.+ ++.+.+.+ .+ ...+.+.|.. .++..+++.||++|+. ||++.+ |.++
T Consensus 208 ~l~~~l~~~-----g~~vvl~g~~~e~~~~~~i~~~~~-~~~~~l~g~~sl~e~~ali~~a~~~i~~DsG~~Hl--Aaa~ 279 (349)
T 3tov_A 208 HVADYFGRL-----GYKTVFFGGPMDLEMVQPVVEQME-TKPIVATGKFQLGPLAAAMNRCNLLITNDSGPMHV--GISQ 279 (349)
T ss_dssp HHHHHHHHH-----TCEEEECCCTTTHHHHHHHHHTCS-SCCEECTTCCCHHHHHHHHHTCSEEEEESSHHHHH--HHTT
T ss_pred HHHHHHHhC-----CCeEEEEeCcchHHHHHHHHHhcc-cccEEeeCCCCHHHHHHHHHhCCEEEECCCCHHHH--HHhc
Confidence 566666542 456665444443 23333322 22 2234555643 6899999999999997 555444 8999
Q ss_pred CCCEEEecCC
Q 012492 364 GLPIILNDYI 373 (462)
Q Consensus 364 G~PvI~~~~~ 373 (462)
|+|+|+.-.+
T Consensus 280 g~P~v~lfg~ 289 (349)
T 3tov_A 280 GVPIVALYGP 289 (349)
T ss_dssp TCCEEEECSS
T ss_pred CCCEEEEECC
Confidence 9999997543
No 59
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.36 E-value=4.5e-06 Score=89.26 Aligned_cols=176 Identities=12% Similarity=0.007 Sum_probs=115.6
Q ss_pred HHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCH---HHHHHHhhccCC-CCeEEecc
Q 012492 259 RLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNR---TLASTLQSEEWK-IPVKVRGF 334 (462)
Q Consensus 259 r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~---~l~~~~~~~~~~-~~V~~~g~ 334 (462)
|..+||+++.. ++... ....|-..+.+....+.|++ .|+.++++...... .+++..++.|+. ++|.|.+.
T Consensus 514 R~~~gLp~~~v-~f~~f-N~~~Ki~p~~~~~W~~IL~~----vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~ 587 (723)
T 4gyw_A 514 RSQYGLPEDAI-VYCNF-NQLYKIDPSTLQMWANILKR----VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPV 587 (723)
T ss_dssp GGGGTCCTTSE-EEECC-SCGGGCCHHHHHHHHHHHHH----CSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred hhhcCCCCCCE-EEEeC-CccccCCHHHHHHHHHHHHh----CCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCC
Confidence 56789987653 22222 22234445555555555554 47766554433322 255556666653 67999887
Q ss_pred c--hhHHHHHHhcchheec---CChhhHHHHHHhCCCEEEecCCCCccccchHHHHHCCce-eeeCCHHHHHHHHHHHhc
Q 012492 335 E--TQMEKWMGACDCIITK---AGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAG-VFTRSPKETARIVTEWFS 408 (462)
Q Consensus 335 ~--~~~~~l~~~aD~vV~~---sg~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g-~~~~~~~~la~~i~~ll~ 408 (462)
. ++.-..|+.+|+++=+ +|++|.+||+.+|+|||..+.........+..+...|.. +++.+.++..+...+|.
T Consensus 588 ~~~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~~la- 666 (723)
T 4gyw_A 588 APKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLG- 666 (723)
T ss_dssp CCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHHHHH-
T ss_pred CCHHHHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHHHHh-
Confidence 6 3555677889998832 468999999999999999875433334455667777864 56678999999999998
Q ss_pred CCHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHH
Q 012492 409 TKTDELKRMSENALKLA---QPEAVVDIVKDIHDLA 441 (462)
Q Consensus 409 ~d~~~~~~m~~~a~~~~---~~~~~~~ia~~i~~l~ 441 (462)
+|++.+.++++..++.. .-+.....++.+++.+
T Consensus 667 ~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~ 702 (723)
T 4gyw_A 667 TDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLY 702 (723)
T ss_dssp HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHH
Confidence 79998888887765432 2356666666666654
No 60
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.32 E-value=1e-05 Score=86.91 Aligned_cols=223 Identities=12% Similarity=0.056 Sum_probs=138.4
Q ss_pred CcEEEEcCHHHHHHHHHc-CCCCCcEEEcCCCCChhhhcccC---ChHHHHHHcCCCCCCcEEEEEeCCCCCc-------
Q 012492 213 VNRCYCPSKEVAKRASYF-GLEVSQIRVFGLPIRPSFVRAVI---SKDNLRLELQMDPILPAVLLMGGGEGMG------- 281 (462)
Q Consensus 213 ~d~~i~~s~~~~~~l~~~-gi~~~~i~v~g~pv~~~~~~~~~---~~~~~r~~l~l~~~~~~iLv~gG~~~~~------- 281 (462)
.|.++++++...+.+.+. ++++.++..+|.|-.+.++.... .++.+++++++++++++||....-.+..
T Consensus 479 ~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~ 558 (729)
T 3l7i_A 479 WDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKY 558 (729)
T ss_dssp CSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSS
T ss_pred CCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHHHhcccchHHHHHHHHHHhCCCCCCeEEEEeeeeeCCcccccccc
Confidence 588999999988877664 78778899999997766653211 2456888999998899888875322210
Q ss_pred --cHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHH
Q 012492 282 --PVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAE 359 (462)
Q Consensus 282 --~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~E 359 (462)
.....+..+.+.+. .++.+ +.-..+.....+...+....+.......++.++|..||++|+- .+.++.|
T Consensus 559 ~~~~~~~~~~l~~~l~------~~~~l--i~r~Hp~~~~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lITD-ySSv~fD 629 (729)
T 3l7i_A 559 LFELKIDLDNLYKELG------DDYVI--LLRMHYLISNALDLSGYENFAIDVSNYNDVSELFLISDCLITD-YSSVMFD 629 (729)
T ss_dssp CCCCTTCHHHHHHHHT------TTEEE--EECCCHHHHTTCCCTTCTTTEEECTTCSCHHHHHHTCSEEEES-SCTHHHH
T ss_pred ccchhhHHHHHHHHcC------CCeEE--EEecCcchhccccccccCCcEEeCCCCcCHHHHHHHhCEEEee-chHHHHh
Confidence 01112334444442 24433 3343432222221112334454444446899999999999996 3468899
Q ss_pred HHHhCCCEEEecCCCCccccc----hHHHHHCCceeeeCCHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCcHHHH
Q 012492 360 ALIRGLPIILNDYIPGQEKGN----VPYVVDNGAGVFTRSPKETARIVTEWFSTK---TDELKRMSENALKLAQPEAVVD 432 (462)
Q Consensus 360 Ala~G~PvI~~~~~~~~~~~n----~~~l~~~G~g~~~~~~~~la~~i~~ll~~d---~~~~~~m~~~a~~~~~~~~~~~ 432 (462)
.+.+++|+|.....-.+...+ .-.+.+.-.|..+.+.+++.++|......+ .+.++++.+..-.+.+..++++
T Consensus 630 ~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~dg~as~r 709 (729)
T 3l7i_A 630 YGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYTEPYGLAKELKNLDKVQQQYQEKIDAFYDRFCSVDNGKASQY 709 (729)
T ss_dssp HGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEESSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTTCCSCHHHH
T ss_pred HHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeECCHHHHHHHHhhhhccchhHHHHHHHHHHHhCCccCChHHHH
Confidence 999999999986532111100 001112233567788999999888765212 2334444444444556789999
Q ss_pred HHHHHHHHHhcc
Q 012492 433 IVKDIHDLAAQR 444 (462)
Q Consensus 433 ia~~i~~l~~~~ 444 (462)
|++.|.+.....
T Consensus 710 i~~~i~~~~~~~ 721 (729)
T 3l7i_A 710 IGDLIHKDIKEQ 721 (729)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhcCcCc
Confidence 999999877644
No 61
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=98.11 E-value=0.00012 Score=70.51 Aligned_cols=97 Identities=12% Similarity=-0.009 Sum_probs=58.0
Q ss_pred CCcEEEEEeCCCCC-cc-HHHHHHHHHHhhhcccCCCCCceEEEEccCCHH--HHHHHhhccCCCCeEEeccc--hhHHH
Q 012492 267 ILPAVLLMGGGEGM-GP-VKETAMALGESLLDKETGRPIGQLIIICGRNRT--LASTLQSEEWKIPVKVRGFE--TQMEK 340 (462)
Q Consensus 267 ~~~~iLv~gG~~~~-~~-~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~--l~~~~~~~~~~~~V~~~g~~--~~~~~ 340 (462)
++++|++..|+... +. -.+.+.++++.|.+ .+++++++.|...+ +.+.+.+. ..++.+.|.. .++..
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~-----~~~~vvl~~g~~~e~~~~~~i~~~--~~~~~l~g~~sl~el~a 249 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLAD-----SGIRIKLPWGAPHEEERAKRLAEG--FAYVEVLPKMSLEGVAR 249 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTT-----TCCEEEECCSSHHHHHHHHHHHTT--CTTEEECCCCCHHHHHH
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHH-----CCCcEEEecCCHHHHHHHHHHHhh--CCcccccCCCCHHHHHH
Confidence 45666665554432 22 12345556666653 25665554454322 22333321 1346666653 68999
Q ss_pred HHHhcchheec-CChhhHHHHHHhCCCEEEecC
Q 012492 341 WMGACDCIITK-AGPGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 341 l~~~aD~vV~~-sg~~t~~EAla~G~PvI~~~~ 372 (462)
+++.||++|+. ||++.+ |.++|+|+|+.-.
T Consensus 250 li~~a~l~I~~DSG~~Hl--Aaa~g~P~v~lfg 280 (326)
T 2gt1_A 250 VLAGAKFVVSVDTGLSHL--TAALDRPNITVYG 280 (326)
T ss_dssp HHHTCSEEEEESSHHHHH--HHHTTCCEEEEES
T ss_pred HHHhCCEEEecCCcHHHH--HHHcCCCEEEEEC
Confidence 99999999998 565544 6779999998753
No 62
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=90.38 E-value=2.8 Score=36.45 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=41.4
Q ss_pred HHHHHhcchhee-cCChhhH---HHHHHhCCCEEEecCCCCccccchHHHHHCC---------ceeeeCCHHHHHHHHHH
Q 012492 339 EKWMGACDCIIT-KAGPGTI---AEALIRGLPIILNDYIPGQEKGNVPYVVDNG---------AGVFTRSPKETARIVTE 405 (462)
Q Consensus 339 ~~l~~~aD~vV~-~sg~~t~---~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G---------~g~~~~~~~~la~~i~~ 405 (462)
.-+...||++|. ++|.+|+ .||+..++|+++.+..+.... -...+.+.| ...++++++++.+.|.+
T Consensus 113 ~~m~~~sda~IvlpGG~GTL~E~~eal~~~kPV~lln~~g~w~~-~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~~ 191 (195)
T 1rcu_A 113 FVLLRNADVVVSIGGEIGTAIEILGAYALGKPVILLRGTGGWTD-RISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQ 191 (195)
T ss_dssp HHHHTTCSEEEEESCCHHHHHHHHHHHHTTCCEEEETTSCHHHH-HGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHHT
T ss_pred HHHHHhCCEEEEecCCCcHHHHHHHHHhcCCCEEEECCCCccHH-HHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHHH
Confidence 356678998664 5555664 568889999999975432211 011222233 34566788888877765
Q ss_pred H
Q 012492 406 W 406 (462)
Q Consensus 406 l 406 (462)
+
T Consensus 192 ~ 192 (195)
T 1rcu_A 192 I 192 (195)
T ss_dssp C
T ss_pred H
Confidence 4
No 63
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=88.74 E-value=4.3 Score=35.06 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=26.3
Q ss_pred hHHHHHHhcchhee-cCChhhHHHHH---H------hCCCEEEecCC
Q 012492 337 QMEKWMGACDCIIT-KAGPGTIAEAL---I------RGLPIILNDYI 373 (462)
Q Consensus 337 ~~~~l~~~aD~vV~-~sg~~t~~EAl---a------~G~PvI~~~~~ 373 (462)
.-..++..||++|. ++|.+|+-|.. . .++|+++.+..
T Consensus 101 Rk~~m~~~sda~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln~~ 147 (189)
T 3sbx_A 101 RKQVMEDRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPW 147 (189)
T ss_dssp HHHHHHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTT
T ss_pred HHHHHHHHCCEEEEeCCCcchHHHHHHHHHHHHhcccCCCEEEecCC
Confidence 33467789998775 55678876644 2 38999999864
No 64
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=88.59 E-value=0.88 Score=38.98 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=42.1
Q ss_pred HHHHhcchhe-ecCChhhH---HHHHHhCCCEEEecCCCCccccchHHHHH--CCceeeeCCHHHHHHHHHHHh
Q 012492 340 KWMGACDCII-TKAGPGTI---AEALIRGLPIILNDYIPGQEKGNVPYVVD--NGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 340 ~l~~~aD~vV-~~sg~~t~---~EAla~G~PvI~~~~~~~~~~~n~~~l~~--~G~g~~~~~~~~la~~i~~ll 407 (462)
-+...||.+| .++|.+|+ .|++..++|+++.+.. + ....++.+ .....++++++++.+.+.+++
T Consensus 103 ~m~~~sda~IvlpGg~GTL~E~~~al~~~kpV~~l~~~-~---~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~ 172 (176)
T 2iz6_A 103 INALSSNVLVAVGMGPGTAAEVALALKAKKPVVLLGTQ-P---EAEKFFTSLDAGLVHVAADVAGAIAAVKQLL 172 (176)
T ss_dssp CCGGGCSEEEEESCCHHHHHHHHHHHHTTCCEEEESCC-H---HHHHHHHHHCTTTEEEESSHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEecCCccHHHHHHHHHHhCCcEEEEcCc-c---cccccCChhhcCeEEEcCCHHHHHHHHHHHH
Confidence 3556789866 45566664 5577899999999862 1 11112222 234567788999988888876
No 65
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=86.96 E-value=2.1 Score=36.04 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=43.5
Q ss_pred HHHHhcchhee--cC---ChhhHHH---HHHhCCCEEEecCCC-CccccchHHHH------HC--------------Cce
Q 012492 340 KWMGACDCIIT--KA---GPGTIAE---ALIRGLPIILNDYIP-GQEKGNVPYVV------DN--------------GAG 390 (462)
Q Consensus 340 ~l~~~aD~vV~--~s---g~~t~~E---Ala~G~PvI~~~~~~-~~~~~n~~~l~------~~--------------G~g 390 (462)
+.+..||++|. .+ ..+|..| |.+.|+||++..... .....|...+. ++ ..|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 67999999886 22 3678888 789999999986531 00011111110 00 156
Q ss_pred eeeCCHHHHHHHHHHHh
Q 012492 391 VFTRSPKETARIVTEWF 407 (462)
Q Consensus 391 ~~~~~~~~la~~i~~ll 407 (462)
.++.+.+++.+.|.+.|
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 77888888888887755
No 66
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=86.39 E-value=6.1 Score=34.88 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=42.4
Q ss_pred HHHHHhcchhee-cCChhhHHHHH---------HhCCCEEEecCCCCcc-ccc-hHHHHHCCc--------eeeeCCHHH
Q 012492 339 EKWMGACDCIIT-KAGPGTIAEAL---------IRGLPIILNDYIPGQE-KGN-VPYVVDNGA--------GVFTRSPKE 398 (462)
Q Consensus 339 ~~l~~~aD~vV~-~sg~~t~~EAl---------a~G~PvI~~~~~~~~~-~~n-~~~l~~~G~--------g~~~~~~~~ 398 (462)
..++..||++|. ++|.+|+-|.. ..++|+++.+..+... ..+ .+.+++.|. ..+++++++
T Consensus 100 ~~~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee 179 (216)
T 1ydh_A 100 AAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKE 179 (216)
T ss_dssp HHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEESSHHH
T ss_pred HHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEeCCHHH
Confidence 356778998765 66678876654 3589999998532111 100 123444443 356788888
Q ss_pred HHHHHHHHh
Q 012492 399 TARIVTEWF 407 (462)
Q Consensus 399 la~~i~~ll 407 (462)
+.+.+.+..
T Consensus 180 ~~~~l~~~~ 188 (216)
T 1ydh_A 180 LMEKMEEYT 188 (216)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHhc
Confidence 888887643
No 67
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=86.22 E-value=5.2 Score=34.58 Aligned_cols=67 Identities=24% Similarity=0.218 Sum_probs=38.9
Q ss_pred HHHHHHhcchhee-cCChhhHH---HHHH------hCCCEEEecCCCCccccch---HHHHHCC--------ceeeeCCH
Q 012492 338 MEKWMGACDCIIT-KAGPGTIA---EALI------RGLPIILNDYIPGQEKGNV---PYVVDNG--------AGVFTRSP 396 (462)
Q Consensus 338 ~~~l~~~aD~vV~-~sg~~t~~---EAla------~G~PvI~~~~~~~~~~~n~---~~l~~~G--------~g~~~~~~ 396 (462)
-..+...||.+|. ++|.+|+- |++. .++|+++.+..+-... -. +.+.+.| ...+++++
T Consensus 91 k~~~~~~sda~IvlPGG~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~~~-l~~~l~~~~~~Gfi~~~~~~~~~~~~~~ 169 (191)
T 1t35_A 91 KAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEP-MMKMVKYSIQEGFSNESHLKLIHSSSRP 169 (191)
T ss_dssp HHHHHHHCSEEEECSCCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTHH-HHHHHHHHHHTTSSCTTHHHHEEEESSH
T ss_pred HHHHHHHCCEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEecCCcccch-HHHHHHHHHHCCCCCHHHcCeEEEeCCH
Confidence 3456788998765 55677764 4664 6899999975221110 11 2344444 23455677
Q ss_pred HHHHHHHHH
Q 012492 397 KETARIVTE 405 (462)
Q Consensus 397 ~~la~~i~~ 405 (462)
+++.+.+.+
T Consensus 170 ~e~~~~l~~ 178 (191)
T 1t35_A 170 DELIEQMQN 178 (191)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 776666654
No 68
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=85.35 E-value=3.8 Score=35.68 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=25.6
Q ss_pred HHHHHHhcchhee-cCChhhHHH---HHH------hCCCEEEecCC
Q 012492 338 MEKWMGACDCIIT-KAGPGTIAE---ALI------RGLPIILNDYI 373 (462)
Q Consensus 338 ~~~l~~~aD~vV~-~sg~~t~~E---Ala------~G~PvI~~~~~ 373 (462)
-..++..||++|. ++|.+|+-| ++. .++|+++.+..
T Consensus 111 k~~m~~~sda~IalPGG~GTldEl~e~lt~~qlg~~~kPvvlln~~ 156 (199)
T 3qua_A 111 KREMEHRSDAFIALPGGIGTLEEFFEAWTAGYLGMHDKPLILLDPF 156 (199)
T ss_dssp HHHHHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTT
T ss_pred HHHHHHhcCccEEeCCCccHHHHHHHHHHHHHhccCCCCEEEEcCC
Confidence 3456789998775 556778655 455 38999999864
No 69
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=85.22 E-value=4.9 Score=35.49 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
||||+|+.+++| .-+.++.++|.+.++
T Consensus 1 m~rI~vl~SG~g----~~~~~~l~~l~~~~~ 27 (216)
T 2ywr_A 1 MLKIGVLVSGRG----SNLQAIIDAIESGKV 27 (216)
T ss_dssp CEEEEEEECSCC----HHHHHHHHHHHTTSS
T ss_pred CCEEEEEEeCCc----HHHHHHHHHHHhCCC
Confidence 579999999986 456778888887653
No 70
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=84.00 E-value=2.9 Score=35.25 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=41.7
Q ss_pred HHHHhcchheecC---ChhhHHH---HHHhCCCEEEecCCCCccccchHHHHHCCc----eeeeCCHHHHHHHHHHHh
Q 012492 340 KWMGACDCIITKA---GPGTIAE---ALIRGLPIILNDYIPGQEKGNVPYVVDNGA----GVFTRSPKETARIVTEWF 407 (462)
Q Consensus 340 ~l~~~aD~vV~~s---g~~t~~E---Ala~G~PvI~~~~~~~~~~~n~~~l~~~G~----g~~~~~~~~la~~i~~ll 407 (462)
+++..||++|.-- ..+|..| |.+.|+||++..........|.. +..... -+...+.+++.+.+.+.+
T Consensus 73 ~~i~~aD~vva~~~~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M-~~g~~~~~~~~~~~y~~~el~~~l~~~~ 149 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAM-IRGAADGSRFQVWDYAEGEVETMLDRYF 149 (165)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHH-HHHTCCSSSEEEEECCTTTHHHHHHHHH
T ss_pred HHHHhCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhh-hcccCccceeEEEecCHHHHHHHHHHHH
Confidence 7899999987643 3778888 78999999997543221233433 222211 122236677777777666
No 71
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=83.97 E-value=0.72 Score=39.17 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHhcchhee-----cCChhhHHH---HHHhCCCEEEec
Q 012492 340 KWMGACDCIIT-----KAGPGTIAE---ALIRGLPIILND 371 (462)
Q Consensus 340 ~l~~~aD~vV~-----~sg~~t~~E---Ala~G~PvI~~~ 371 (462)
+.+..||++|. ....+|..| |.+.|+||++..
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 57899999887 234778888 889999999995
No 72
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=83.57 E-value=8.3 Score=33.98 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHhcchhe-ecCChhhHHH---HHHh------CCCEEEecCCCCcc-ccc-hHHHHHCC--------ceeeeCCHHH
Q 012492 339 EKWMGACDCII-TKAGPGTIAE---ALIR------GLPIILNDYIPGQE-KGN-VPYVVDNG--------AGVFTRSPKE 398 (462)
Q Consensus 339 ~~l~~~aD~vV-~~sg~~t~~E---Ala~------G~PvI~~~~~~~~~-~~n-~~~l~~~G--------~g~~~~~~~~ 398 (462)
.-+...||.+| .++|.+|+-| ++.. ++|+++.+..+... ..+ .+.+++.| ...+++++++
T Consensus 104 ~~~~~~sda~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee 183 (215)
T 2a33_A 104 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKE 183 (215)
T ss_dssp HHHHHTCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEESSHHH
T ss_pred HHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEeCCHHH
Confidence 34667899866 4666778655 4454 89999988632111 000 11223333 2346778888
Q ss_pred HHHHHHHH
Q 012492 399 TARIVTEW 406 (462)
Q Consensus 399 la~~i~~l 406 (462)
+.+.+.+.
T Consensus 184 ~~~~l~~~ 191 (215)
T 2a33_A 184 LVKKLEEY 191 (215)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 77777654
No 73
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=83.30 E-value=21 Score=31.64 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhh
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
.||||+|+.+++| .-+.++.++|.+.
T Consensus 21 ~~~rI~~l~SG~g----~~~~~~l~~l~~~ 46 (229)
T 3auf_A 21 HMIRIGVLISGSG----TNLQAILDGCREG 46 (229)
T ss_dssp TCEEEEEEESSCC----HHHHHHHHHHHTT
T ss_pred CCcEEEEEEeCCc----HHHHHHHHHHHhC
Confidence 3689999999886 4567788888765
No 74
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=82.17 E-value=1.8 Score=38.47 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=22.9
Q ss_pred CCCeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 61 RTKNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 61 ~~~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
+|||||+++ ...|+-...++..++++|.+.
T Consensus 1 ~m~~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 31 (223)
T 3ro0_A 1 MEKKVLLTGFDPFGGETVNPSWEAVKRLNGA 31 (223)
T ss_dssp -CEEEEEEEECCCTTCSCCHHHHHHHHTTTC
T ss_pred CCCEEEEEeCCCCCCCCCChHHHHHHHhccc
Confidence 378999998 457644678888899999875
No 75
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=81.87 E-value=6.1 Score=38.76 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=40.6
Q ss_pred HHHHHhcchhee-cCChhhHHH---HHH---------hCCCEEEecCC--CCccccchHHHH------H-CCceeeeCCH
Q 012492 339 EKWMGACDCIIT-KAGPGTIAE---ALI---------RGLPIILNDYI--PGQEKGNVPYVV------D-NGAGVFTRSP 396 (462)
Q Consensus 339 ~~l~~~aD~vV~-~sg~~t~~E---Ala---------~G~PvI~~~~~--~~~~~~n~~~l~------~-~G~g~~~~~~ 396 (462)
...+..||+||. |+|.+|+-| ++. .++|+|+.+.. .+.-..-..++. + ...-++++++
T Consensus 240 ~~mv~~SDAfIaLPGG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll~~l~~~l~~~~~~~~iiv~ddp 319 (460)
T 3bq9_A 240 EAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDP 319 (460)
T ss_dssp HHHHHHCSEEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHTCTTGGGGCEEEESCH
T ss_pred HHHHHhCCEEEEcCCCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHHHHHHHHhcchhhcCcEEEeCCH
Confidence 456778998765 666788655 455 37999998621 110000111111 1 1223467899
Q ss_pred HHHHHHHHHHh
Q 012492 397 KETARIVTEWF 407 (462)
Q Consensus 397 ~~la~~i~~ll 407 (462)
+++.+.+.+.+
T Consensus 320 eEal~~l~~~~ 330 (460)
T 3bq9_A 320 AAVAQHMHAGM 330 (460)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888776
No 76
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=80.31 E-value=19 Score=32.85 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=26.8
Q ss_pred cCCCCC--CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 57 IGAERT--KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 57 ~~~~~~--~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+|.++| ++|.|+-+|.| | +.+.+++.+.-|+...+++.|.
T Consensus 5 ~~~~~~~~~~IGv~DsG~G-g-----ltv~~~i~~~~P~~~~iy~~D~ 46 (273)
T 2oho_A 5 RGSHMMDTRPIGFLDSGVG-G-----LTVVCELIRQLPHEKIVYIGDS 46 (273)
T ss_dssp TSSCBCCCCCEEEEESSST-T-----HHHHHHHHHHCTTCCEEEEECG
T ss_pred CcccccCCCcEEEEeCCCc-H-----HHHHHHHHHHCCCCCEEEEeCC
Confidence 344443 57999988996 5 4566777776665556677764
No 77
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=77.58 E-value=12 Score=32.89 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhCCCEEEECCc
Q 012492 153 AKEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~ 173 (462)
...+.+.+++++||+|++.+.
T Consensus 70 d~~~~~~l~~~~~Dliv~agy 90 (211)
T 3p9x_A 70 EIEVVQQLKEKQIDFVVLAGY 90 (211)
T ss_dssp HHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHhcCCCEEEEeCc
Confidence 346678899999999998874
No 78
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=76.62 E-value=24 Score=30.94 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=19.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhh
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
+++||.++.++.| +-+.+|.+++++.
T Consensus 7 ~~~ri~vl~SG~g----snl~all~~~~~~ 32 (215)
T 3kcq_A 7 KELRVGVLISGRG----SNLEALAKAFSTE 32 (215)
T ss_dssp CCEEEEEEESSCC----HHHHHHHHHTCCC
T ss_pred CCCEEEEEEECCc----HHHHHHHHHHHcC
Confidence 4579999999886 4456788888653
No 79
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=76.05 E-value=9.7 Score=33.55 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=19.7
Q ss_pred CCCCCeEEEEecCCCchHHHHHHHHHHHHhh
Q 012492 59 AERTKNVLILMSDTGGGHRASAEAIRDAFKI 89 (462)
Q Consensus 59 ~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~ 89 (462)
+.+||||+|+.++.| +-..+|.+++..
T Consensus 9 ~~~~~ri~vl~SG~g----snl~all~~~~~ 35 (215)
T 3da8_A 9 PSAPARLVVLASGTG----SLLRSLLDAAVG 35 (215)
T ss_dssp CCSSEEEEEEESSCC----HHHHHHHHHSST
T ss_pred CCCCcEEEEEEeCCh----HHHHHHHHHHhc
Confidence 456789999999985 445567777754
No 80
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=74.86 E-value=7.3 Score=32.24 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=40.6
Q ss_pred HHHHHhcchheec---CChhhHHH---HHHhCCCEEEecCCCCccccchHHHHH-C--Cceee--eCCHHHHHHHHHHHh
Q 012492 339 EKWMGACDCIITK---AGPGTIAE---ALIRGLPIILNDYIPGQEKGNVPYVVD-N--GAGVF--TRSPKETARIVTEWF 407 (462)
Q Consensus 339 ~~l~~~aD~vV~~---sg~~t~~E---Ala~G~PvI~~~~~~~~~~~n~~~l~~-~--G~g~~--~~~~~~la~~i~~ll 407 (462)
.+++..||++|.. ...+|..| |.+.|+||++.-.+.. ..+...+.. . |.-+. ..+.+++.+.|.+++
T Consensus 63 ~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~--~~~ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~ 140 (152)
T 4fyk_A 63 LNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQS--GRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYF 140 (152)
T ss_dssp HHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGG--SCCCCHHHHHHCCSSSEEEEECCTTCHHHHHHHHH
T ss_pred HHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCc--cchhHHHHcCCCCCCeEEEEEecHHHHHHHHHHHH
Confidence 3789999998864 23678888 7899999999654211 112222222 1 11122 222377888888877
No 81
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=74.77 E-value=16 Score=31.99 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=16.7
Q ss_pred HHHHHHHHhhCCCEEEECCc
Q 012492 154 KEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~ 173 (462)
..+.+.+++++||+|++.+.
T Consensus 76 ~~~~~~l~~~~~Dliv~agy 95 (209)
T 4ds3_A 76 DAILAALDVLKPDIICLAGY 95 (209)
T ss_dssp HHHHHHHHHHCCSEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEecc
Confidence 46678899999999998874
No 82
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=74.42 E-value=12 Score=35.98 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=31.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
||+|+++++--|-|-.+.+.+||.+|.+.|. .|.++|.
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~---~vllvd~ 38 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGK---RVLLAGL 38 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCC---CeEEEeC
Confidence 6899999887788999999999999998863 5666765
No 83
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=71.72 E-value=5.9 Score=34.01 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=26.9
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
..||||+++.+|..+-....+.++++.+.+.| .++.+.++.
T Consensus 3 M~M~kilii~~S~~g~T~~la~~i~~~l~~~g---~~v~~~~l~ 43 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQGG---FEARVRTVP 43 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHHTT---CEEEEEBCC
T ss_pred CCcceEEEEEeCCCChHHHHHHHHHHHHhhCC---CEEEEEEhh
Confidence 34679999998864234455678888888765 366666543
No 84
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=71.45 E-value=5.2 Score=35.61 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=23.7
Q ss_pred CCCCCeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 59 AERTKNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 59 ~~~~~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
.+.|+|||+++ ...|+=-..++..++++|.+.
T Consensus 20 ~~~mk~VLvTGF~PF~g~~~NPS~~~v~~L~~~ 52 (228)
T 4hps_A 20 FQSMKTILVTAFDPFGGEAINPSWEAIKPLQGS 52 (228)
T ss_dssp SCCCEEEEEEEECCCTTCSCCHHHHHHGGGTTC
T ss_pred CCCCCEEEEEeccCCCCCCCChHHHHHHHhcCc
Confidence 34478999998 457534567888899999874
No 85
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=71.13 E-value=22 Score=31.21 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhCCCEEEECCc
Q 012492 153 AKEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~ 173 (462)
...+.+.+++++||+|++.+.
T Consensus 72 d~~~~~~l~~~~~Dliv~agy 92 (215)
T 3tqr_A 72 ESTLQKTIDHYDPKLIVLAGF 92 (215)
T ss_dssp HHHHHHHHHTTCCSEEEESSC
T ss_pred HHHHHHHHHhcCCCEEEEccc
Confidence 345678899999999998764
No 86
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=70.70 E-value=6.3 Score=32.03 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=26.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
||||+|+..|..|.....|..|++.|.+.| +++.+.++
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g---~~v~~~~~ 38 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGG---HEVTLLNA 38 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTT---CEEEEEET
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCC---CeEEEEeh
Confidence 689999987753355667888999998875 35555543
No 87
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=70.69 E-value=53 Score=28.58 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=19.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhh
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
||||.++..++| .-+.++.+++.+.
T Consensus 3 m~ki~vl~sG~g----~~~~~~l~~l~~~ 27 (212)
T 3av3_A 3 MKRLAVFASGSG----TNFQAIVDAAKRG 27 (212)
T ss_dssp CEEEEEECCSSC----HHHHHHHHHHHTT
T ss_pred CcEEEEEEECCc----HHHHHHHHHHHhC
Confidence 679999998885 3466788888765
No 88
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=70.10 E-value=7.1 Score=32.70 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=27.3
Q ss_pred HHHHHhcchheec--C------ChhhHHH---HHHhCCCEEEecC
Q 012492 339 EKWMGACDCIITK--A------GPGTIAE---ALIRGLPIILNDY 372 (462)
Q Consensus 339 ~~l~~~aD~vV~~--s------g~~t~~E---Ala~G~PvI~~~~ 372 (462)
...+..||++|.. + -.+|..| |.+.|+|+|+...
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 4899999998754 2 2678888 7899999999764
No 89
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=69.40 E-value=53 Score=34.90 Aligned_cols=67 Identities=13% Similarity=0.016 Sum_probs=43.2
Q ss_pred CeEEe-ccchhH-HHHHHhcchheecCC------hhhHHHHHHhCCCEEEecCCCCccccchHHHHH--CCceeeeCC-H
Q 012492 328 PVKVR-GFETQM-EKWMGACDCIITKAG------PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD--NGAGVFTRS-P 396 (462)
Q Consensus 328 ~V~~~-g~~~~~-~~l~~~aD~vV~~sg------~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~--~G~g~~~~~-~ 396 (462)
+|.|+ +|-..+ ..+++.||+...+|. |.+-|=+|..|.+.|++-.+ .|++...+ .+.|+.... .
T Consensus 630 KVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDG-----anvEi~e~vG~~Ngf~FG~~~ 704 (824)
T 2gj4_A 630 RVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG-----ANVEMAEEAGEENFFIFGMRV 704 (824)
T ss_dssp EEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCT-----THHHHHHHHCGGGSEECSCCH
T ss_pred EEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecC-----ccchhhhccCCCCEEEeCCcH
Confidence 56665 565444 467899999886653 67779999999999986432 25554432 334665543 4
Q ss_pred HHH
Q 012492 397 KET 399 (462)
Q Consensus 397 ~~l 399 (462)
+++
T Consensus 705 ~ev 707 (824)
T 2gj4_A 705 EDV 707 (824)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 90
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=69.07 E-value=10 Score=29.23 Aligned_cols=68 Identities=12% Similarity=0.286 Sum_probs=39.4
Q ss_pred CceEEEEccCCH-------HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCChhhHHH---HH--HhCCCEEEe
Q 012492 303 IGQLIIICGRNR-------TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAGPGTIAE---AL--IRGLPIILN 370 (462)
Q Consensus 303 ~~~~lvv~G~~~-------~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg~~t~~E---Al--a~G~PvI~~ 370 (462)
..+++++||.+- ++++.+++.+++..|...+. .++...+..+|++++.+.-.-..+ .. -.++|++..
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~-~~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I 82 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAE-TRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEII 82 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECS-TTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEEC
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecH-HHHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEE
Confidence 356788887763 23344444454433444443 456667788999988664211122 22 259999987
Q ss_pred c
Q 012492 371 D 371 (462)
Q Consensus 371 ~ 371 (462)
+
T Consensus 83 ~ 83 (109)
T 2l2q_A 83 N 83 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 91
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=69.04 E-value=50 Score=30.34 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=23.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
++|.|+-+++| | +.+.+++.+.-|+...+++.|.
T Consensus 25 ~~IGvfDsG~G-g-----ltv~~~i~~~~P~~~~iy~~D~ 58 (290)
T 2vvt_A 25 EAIGLIDSGVG-G-----LTVLKEALKQLPNERLIYLGDT 58 (290)
T ss_dssp SCEEEEESSST-T-----HHHHHHHHHHCTTSCEEEEECT
T ss_pred CcEEEEeCCCc-H-----HHHHHHHHHHCCCccEEEeccc
Confidence 47999988996 5 4466666666665556676764
No 92
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=69.04 E-value=49 Score=30.06 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=52.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhh
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 141 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 141 (462)
...|.|+=+|.| | +.+.+++++.-|+...+|+.|... .||..+..+..
T Consensus 5 ~~~IgvfDSGvG-G-----ltv~~~i~~~lP~~~~iy~~D~a~--~PYG~ks~~~i------------------------ 52 (269)
T 3ist_A 5 KQAIGFIDSGVG-G-----LTVVREVLKQLPHEQVYYLGDTAR--CPYGPRDKEEV------------------------ 52 (269)
T ss_dssp CCCEEEEESSST-T-----HHHHHHHHHHCTTCCEEEEECGGG--CCCTTSCHHHH------------------------
T ss_pred CCcEEEEECCcc-H-----HHHHHHHHHHCCCCcEEEEeCCCC--CCCCCCCHHHH------------------------
Confidence 357999999996 4 345566666666666778887532 23322221110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEE
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~ 197 (462)
..+..++.+.+.+.++|+|+.-....+...+-..+.. .++|++.+
T Consensus 53 --------~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~---~~iPvigi 97 (269)
T 3ist_A 53 --------AKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREK---LDIPVIGV 97 (269)
T ss_dssp --------HHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHH---CSSCEEES
T ss_pred --------HHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHh---cCCCEEee
Confidence 1122234466778899998866544332212333332 47998763
No 93
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=67.70 E-value=25 Score=30.86 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=37.2
Q ss_pred HHHHhcchhee-cCChhhHHH---HHH-------hCCCEEEecCCCCccccch---HHHHHCCc--------eeeeCCHH
Q 012492 340 KWMGACDCIIT-KAGPGTIAE---ALI-------RGLPIILNDYIPGQEKGNV---PYVVDNGA--------GVFTRSPK 397 (462)
Q Consensus 340 ~l~~~aD~vV~-~sg~~t~~E---Ala-------~G~PvI~~~~~~~~~~~n~---~~l~~~G~--------g~~~~~~~ 397 (462)
-+...||.+|. ++|.+|+-| ++. .++|+++.+.. .-..-. +.+.+.|. ..++++++
T Consensus 127 ~m~~~sda~IvlpGG~GTL~El~e~lt~~qlg~~~~kPvvll~~~--~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~ 204 (217)
T 1wek_A 127 LFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLDRG--YWEGLVRWLAFLRDQKAVGPEDLQLFRLTDEPE 204 (217)
T ss_dssp HHHHTEEEEEECSCCHHHHHHHHHHHHHHHTTSSCCCCEEEECHH--HHHHHHHHHHHHHHTTSSCTTGGGGSEEESCHH
T ss_pred HHHHhCCEEEEeCCCCcHHHHHHHHHHHHhhCCCCCCCEEEeCcc--cchhHHHHHHHHHHCCCCCHHHcCeEEEeCCHH
Confidence 46678998664 666777655 555 36999998741 000011 23344443 24567777
Q ss_pred HHHHHHHHH
Q 012492 398 ETARIVTEW 406 (462)
Q Consensus 398 ~la~~i~~l 406 (462)
++.+.+.+.
T Consensus 205 e~~~~l~~~ 213 (217)
T 1wek_A 205 EVVQALKAE 213 (217)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHh
Confidence 777666543
No 94
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=67.07 E-value=36 Score=31.04 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=51.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEeccccccCCCchhhHHHHHHHHhhhHHHHHHhhcCCcchhh
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 141 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 141 (462)
.|+|.|+=+|+| |- .+++++.+.-|+...+++.|... .||..+..+..
T Consensus 24 ~~~IgvfDSGvG-GL-----tv~~~i~~~lP~e~~iy~~D~a~--~PYG~ks~e~i------------------------ 71 (274)
T 3uhf_A 24 AMKIGVFDSGVG-GL-----SVLKSLYEARLFDEIIYYGDTAR--VPYGVKDKDTI------------------------ 71 (274)
T ss_dssp CCEEEEEESSST-TH-----HHHHHHHHTTCCSEEEEEECTTT--CCCTTSCHHHH------------------------
T ss_pred CCeEEEEECCCC-hH-----HHHHHHHHHCCCCCEEEEecCCC--CCCCCCCHHHH------------------------
Confidence 478999999996 53 34466666666666777787421 23322221110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEE
Q 012492 142 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~ 197 (462)
..+..++.+.+.+.++|+|+.-........+-..+.. .++|++.+
T Consensus 72 --------~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~---~~iPvigi 116 (274)
T 3uhf_A 72 --------IKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAK---AHFPVYGV 116 (274)
T ss_dssp --------HHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHH---CSSCEECS
T ss_pred --------HHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHh---cCCCEEcC
Confidence 1122234466888999998865543332112233332 47998753
No 95
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=66.59 E-value=11 Score=33.12 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=24.8
Q ss_pred CeEEEEe-cCCCchHHHHHHHHHHHHhhhcCCceEEE
Q 012492 63 KNVLILM-SDTGGGHRASAEAIRDAFKIEFGDEYRIF 98 (462)
Q Consensus 63 ~kIli~~-~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~ 98 (462)
||||+++ ...|+=...++..+++.|.+......++.
T Consensus 1 m~VLvTGF~PF~~~~~NPS~~~v~~L~~~~~~~~~i~ 37 (208)
T 1x10_A 1 MKVLVTGFEPFGGEKINPTERIAKDLDGIKIGDAQVF 37 (208)
T ss_dssp CEEEEEEECCCTTCSCCHHHHHHHHHTTCEETTEEEE
T ss_pred CEEEEEeecCCCCCCCChHHHHHHHhhccCCCCeEEE
Confidence 6899998 45664556788899999987632234433
No 96
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=66.59 E-value=6.8 Score=34.53 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=21.8
Q ss_pred CCeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 62 TKNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 62 ~~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
|||||+++ ...|+=...++..++++|.+.
T Consensus 1 m~~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 30 (215)
T 3lac_A 1 MKTVLLTGFDPFGGESINPAWEVAKSLHEK 30 (215)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHTTTTC
T ss_pred CCEEEEEecCCCCCCCCChHHHHHHHhccc
Confidence 67999998 457534567888888988763
No 97
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=66.51 E-value=9.4 Score=33.76 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=25.3
Q ss_pred CCeEEEEe-cCCCchHHHHHHHHHHHHhhhcCCceEEE
Q 012492 62 TKNVLILM-SDTGGGHRASAEAIRDAFKIEFGDEYRIF 98 (462)
Q Consensus 62 ~~kIli~~-~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~ 98 (462)
|++||+++ ...|+=...++..++++|.+......++.
T Consensus 1 mk~VLvTGF~PF~~~~~NPS~~~v~~L~~~~~~~~~i~ 38 (220)
T 1a2z_A 1 MKKVLITGFEPFGGDSKNPTEQIAKYFDRKQIGNAMVY 38 (220)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHHHTTCEETTEEEE
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHhhcccCCCeEEE
Confidence 44699998 45765566888999999987632234433
No 98
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=66.05 E-value=7.2 Score=34.40 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=20.6
Q ss_pred CCeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 62 TKNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 62 ~~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
||+||+++ ...|+=...++..+++.|...
T Consensus 2 MktVLvTGF~PF~~~~~NPS~~~v~~L~~~ 31 (216)
T 4gxh_A 2 MKTILVTAFDPFGGEAINPSWEAIKPLQGS 31 (216)
T ss_dssp -CEEEEEEECCCTTSSSCHHHHHHGGGTTC
T ss_pred CCEEEEeeccCCCCCCCChhHHHHHhhhcc
Confidence 67899998 457633457888888888754
No 99
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=64.63 E-value=1e+02 Score=32.55 Aligned_cols=68 Identities=12% Similarity=-0.031 Sum_probs=43.5
Q ss_pred CeEEe-ccchhH-HHHHHhcchheecCC------hhhHHHHHHhCCCEEEecCCCCccccchHHHHH--CCceeeeC-CH
Q 012492 328 PVKVR-GFETQM-EKWMGACDCIITKAG------PGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD--NGAGVFTR-SP 396 (462)
Q Consensus 328 ~V~~~-g~~~~~-~~l~~~aD~vV~~sg------~~t~~EAla~G~PvI~~~~~~~~~~~n~~~l~~--~G~g~~~~-~~ 396 (462)
+|.|+ +|-..+ ..++++||+...+|. |.+-|=+|..|.+.|.+-.+ .|++...+ .+.++... +.
T Consensus 606 KVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDG-----anvEi~e~vG~~NgF~FG~~~ 680 (796)
T 1l5w_A 606 KVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDG-----ANVEIAEKVGEENIFIFGHTV 680 (796)
T ss_dssp EEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCT-----THHHHHHHHCGGGSEECSCCH
T ss_pred EEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCC-----eeeehhhccCCCcEEEecCCH
Confidence 56665 565444 467899999886653 67789999999998865432 25555444 23555554 44
Q ss_pred HHHH
Q 012492 397 KETA 400 (462)
Q Consensus 397 ~~la 400 (462)
+++.
T Consensus 681 ~ev~ 684 (796)
T 1l5w_A 681 EQVK 684 (796)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 100
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=64.60 E-value=11 Score=32.07 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=27.3
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHHhh-hcCCceEEEEEec
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAFKI-EFGDEYRIFVKDV 102 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~-~g~~~~~v~v~d~ 102 (462)
..||||+++.+|..+-....+.++++.|.+ .| .++.+.++
T Consensus 2 ~~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g---~~v~~~~l 42 (188)
T 2ark_A 2 NAMGKVLVIYDTRTGNTKKMAELVAEGARSLEG---TEVRLKHV 42 (188)
T ss_dssp CCCEEEEEEECCSSSHHHHHHHHHHHHHHTSTT---EEEEEEET
T ss_pred CCCCEEEEEEECCCcHHHHHHHHHHHHHhhcCC---CeEEEEEh
Confidence 347899999988633445567788888887 54 46665653
No 101
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=63.56 E-value=11 Score=32.56 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=27.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
.||||+++.+|..+--...+.++++.+++.| .++.+.++.
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g---~~v~~~~l~ 44 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAG---AEVRLLKVR 44 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTT---CEEEEEECC
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCC---CEEEEEecc
Confidence 5789999998874344556678888888765 356666543
No 102
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=61.60 E-value=89 Score=28.25 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=23.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
++|.|+-+|.| | +.+.+++.+.-|+...+++.|.
T Consensus 4 ~~IgvfDSGvG-G-----ltv~~~i~~~lP~~~~iy~~D~ 37 (272)
T 1zuw_A 4 QPIGVIDSGVG-G-----LTVAKEIMRQLPKENIIYVGDT 37 (272)
T ss_dssp SCEEEEESSST-T-----HHHHHHHHHHSTTCCEEEEECG
T ss_pred CeEEEEeCCcc-h-----HHHHHHHHHhCCCCcEEEeccC
Confidence 47999999886 4 3455666666666567777875
No 103
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=60.28 E-value=15 Score=31.39 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.||||+++.+| .+-....+.++++.+.+.|. ++.+.++
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g~---~v~~~~l 40 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAGA---EVKIRRV 40 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHHSC---EEEEEEC
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCCC---EEEEEeh
Confidence 36899999988 43445556788888887763 5555554
No 104
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=59.99 E-value=15 Score=31.47 Aligned_cols=39 Identities=10% Similarity=-0.095 Sum_probs=26.5
Q ss_pred CCCeEEEEecCC--CchHHHHHHHHHHH-HhhhcCCceEEEEEec
Q 012492 61 RTKNVLILMSDT--GGGHRASAEAIRDA-FKIEFGDEYRIFVKDV 102 (462)
Q Consensus 61 ~~~kIli~~~~~--G~Gh~~~a~aLa~~-L~~~g~~~~~v~v~d~ 102 (462)
+||||+++.++. ++--...+..+++. |.+.| .++.+.|+
T Consensus 1 mMmkilii~gS~r~~g~t~~la~~i~~~~l~~~g---~~v~~~dl 42 (197)
T 2vzf_A 1 MTYSIVAISGSPSRNSTTAKLAEYALAHVLARSD---SQGRHIHV 42 (197)
T ss_dssp CCEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSS---EEEEEEEG
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHHHHHHCC---CeEEEEEc
Confidence 368999999884 33455556677788 87765 46666664
No 105
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=57.73 E-value=7.9 Score=34.97 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=28.5
Q ss_pred cccchhhhccCCCCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 48 DESTVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 48 ~~~~~~~~~~~~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+++..+..+....+++.|.|.++.-|.|-.+.+.+||.+|. +| ..|.++|.
T Consensus 13 ~~~~~~~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g---~~VlliD~ 63 (267)
T 3k9g_A 13 EAQTQGPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-KN---NKVLLIDM 63 (267)
T ss_dssp -------------CCEEEEECCSSSSSCHHHHHHHHHHHHT-TT---SCEEEEEE
T ss_pred hhhhcCcccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CC---CCEEEEEC
Confidence 33344444444444545556666667899999999999999 76 46777764
No 106
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=57.62 E-value=61 Score=29.00 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=24.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+|.|+=+|+| | +.+.+++++..|+...+++.|.
T Consensus 1 ~~igvfDSG~G-G-----ltv~~~l~~~lP~~~~iy~~D~ 34 (255)
T 2jfz_A 1 MKIGVFDSGVG-G-----FSVLKSLLKARLFDEIIYYGDS 34 (255)
T ss_dssp CEEEEEESSST-T-----HHHHHHHHHTTCCSEEEEEECT
T ss_pred CcEEEEECCcc-H-----HHHHHHHHHHCCCCCEEEEeCC
Confidence 58999999995 4 4455777777776667777774
No 107
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=56.74 E-value=10 Score=33.61 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=28.2
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
+.|++|+|.+.++|.|-...+.+|+++|+++|.
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 346667777888999999999999999999974
No 108
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=55.97 E-value=18 Score=30.80 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCchH-HHHHHHHHHHHhh-hcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGH-RASAEAIRDAFKI-EFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh-~~~a~aLa~~L~~-~g~~~~~v~v~d~ 102 (462)
||||+++.+|.. |+ ...+.++++.+.+ .| .++.+.++
T Consensus 1 Mmkilii~~S~~-g~t~~la~~i~~~l~~~~g---~~v~~~~l 39 (198)
T 3b6i_A 1 MAKVLVLYYSMY-GHIETMARAVAEGASKVDG---AEVVVKRV 39 (198)
T ss_dssp -CEEEEEECCSS-SHHHHHHHHHHHHHHTSTT---CEEEEEEC
T ss_pred CCeEEEEEeCCC-cHHHHHHHHHHHHHhhcCC---CEEEEEEc
Confidence 689999998863 55 4556688888887 55 35566654
No 109
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=55.71 E-value=1e+02 Score=26.73 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=18.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhh
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
|||+++.++.| +-..+|.+++++.
T Consensus 1 ~ri~vl~Sg~g----snl~ali~~~~~~ 24 (212)
T 1jkx_A 1 MNIVVLISGNG----SNLQAIIDACKTN 24 (212)
T ss_dssp CEEEEEESSCC----HHHHHHHHHHHTT
T ss_pred CEEEEEEECCc----HHHHHHHHHHHcC
Confidence 68999999885 3466788888765
No 110
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=55.26 E-value=8.4 Score=32.08 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=26.4
Q ss_pred HHHHhcchheec-----CChhhHHH---HHHhCCCEEEecC
Q 012492 340 KWMGACDCIITK-----AGPGTIAE---ALIRGLPIILNDY 372 (462)
Q Consensus 340 ~l~~~aD~vV~~-----sg~~t~~E---Ala~G~PvI~~~~ 372 (462)
+.+..||++|.- .-.+|..| |.+.|+||++...
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~~ 114 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIP 114 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEEc
Confidence 678999998753 23678888 8999999999864
No 111
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=54.88 E-value=93 Score=25.98 Aligned_cols=84 Identities=18% Similarity=0.087 Sum_probs=42.9
Q ss_pred hhHHHHHHh-----cchheecCC---hhhHHHHHHhCCCEEEecCCCCcccc--chHHHHH--CCceee-eC-C------
Q 012492 336 TQMEKWMGA-----CDCIITKAG---PGTIAEALIRGLPIILNDYIPGQEKG--NVPYVVD--NGAGVF-TR-S------ 395 (462)
Q Consensus 336 ~~~~~l~~~-----aD~vV~~sg---~~t~~EAla~G~PvI~~~~~~~~~~~--n~~~l~~--~G~g~~-~~-~------ 395 (462)
+.+.+|.+. ++++|.-+| ...-+=|...-+|||..|...+.-.+ ....+++ .|..+. +. +
T Consensus 53 ~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~a~~~n 132 (170)
T 1xmp_A 53 DYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTN 132 (170)
T ss_dssp HHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCCSCEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCcchHH
Confidence 345555543 577776554 22233455678999999985421111 1223444 455321 22 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012492 396 PKETARIVTEWFSTKTDELKRMSENA 421 (462)
Q Consensus 396 ~~~la~~i~~ll~~d~~~~~~m~~~a 421 (462)
...++..|.. + .|++.++++.+.-
T Consensus 133 AallAaqIla-~-~d~~l~~kl~~~r 156 (170)
T 1xmp_A 133 AGLLAAQILG-S-FHDDIHDALELRR 156 (170)
T ss_dssp HHHHHHHHHH-T-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-c-CCHHHHHHHHHHH
Confidence 1223333333 2 6888888776543
No 112
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=54.61 E-value=45 Score=32.53 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=40.3
Q ss_pred HHHHHHhcchhee-cCChhhHHH---HHHh---C------CCEEEecCCC--CccccchHHHH---HC----CceeeeCC
Q 012492 338 MEKWMGACDCIIT-KAGPGTIAE---ALIR---G------LPIILNDYIP--GQEKGNVPYVV---DN----GAGVFTRS 395 (462)
Q Consensus 338 ~~~l~~~aD~vV~-~sg~~t~~E---Ala~---G------~PvI~~~~~~--~~~~~n~~~l~---~~----G~g~~~~~ 395 (462)
-..++..||+||. |+|.+|+-| ++.. | +|+|+.+.+. +.-..-..++. .. ..-.++++
T Consensus 241 K~~mv~~SDAfIaLPGG~GTLEELfE~LTw~qLgtgk~h~kPIVLln~~~~~gYwd~Ll~fL~~~v~eg~~~~~~iv~Dd 320 (462)
T 3gh1_A 241 LEAFVRMAHGIIIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRSLDKFITDTLGEAARKHYSIAIDN 320 (462)
T ss_dssp HHHHHHHCSEEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHHCGGGGGGCEEEESC
T ss_pred HHHHHHHCCEEEEcCCCcchHHHHHHHHHHHhcccCcCCCCCEEEEcCCCcccHHHHHHHHHHHHhhhhhhhccEEEcCC
Confidence 3456788998765 556778654 5443 4 8999998521 10000111111 11 12246788
Q ss_pred HHHHHHHHHHHh
Q 012492 396 PKETARIVTEWF 407 (462)
Q Consensus 396 ~~~la~~i~~ll 407 (462)
++++.+.+.+.+
T Consensus 321 peEvl~~i~~~~ 332 (462)
T 3gh1_A 321 PAEAARIMSNAM 332 (462)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888887765
No 113
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=54.29 E-value=1.1e+02 Score=26.73 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=14.3
Q ss_pred HHHHHhhccCCCCeEEeccc
Q 012492 316 LASTLQSEEWKIPVKVRGFE 335 (462)
Q Consensus 316 l~~~~~~~~~~~~V~~~g~~ 335 (462)
..+.+++.+++.++.++|+-
T Consensus 202 ~~~al~~~g~p~di~vig~d 221 (276)
T 3ksm_A 202 ALVAIRQSGMSKQFGFIGFD 221 (276)
T ss_dssp HHHHHHHTTCTTSSEEEEES
T ss_pred HHHHHHHcCCCCCeEEEEeC
Confidence 44566777777788888875
No 114
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=53.14 E-value=1e+02 Score=26.01 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=43.2
Q ss_pred hhHHHHHHh-----cchheecCC---hhhHHHHHHhCCCEEEecCCCCcccc--chHHHHH--CCceee-eC-C------
Q 012492 336 TQMEKWMGA-----CDCIITKAG---PGTIAEALIRGLPIILNDYIPGQEKG--NVPYVVD--NGAGVF-TR-S------ 395 (462)
Q Consensus 336 ~~~~~l~~~-----aD~vV~~sg---~~t~~EAla~G~PvI~~~~~~~~~~~--n~~~l~~--~G~g~~-~~-~------ 395 (462)
+.+.+|.+. ++++|.-+| ...-+=|...-+|||..|...+.-.+ ....+++ .|..+. +. +
T Consensus 63 ~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I~~a~~~n 142 (182)
T 1u11_A 63 DRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKN 142 (182)
T ss_dssp HHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEecCCccchH
Confidence 344455543 567776554 33334456778999999985421111 1223445 455431 22 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012492 396 PKETARIVTEWFSTKTDELKRMSENA 421 (462)
Q Consensus 396 ~~~la~~i~~ll~~d~~~~~~m~~~a 421 (462)
...++..|.. + .|++.++++.+.-
T Consensus 143 AallAaqIla-~-~d~~l~~kL~~~r 166 (182)
T 1u11_A 143 AALLAASILA-L-YNPALAARLETWR 166 (182)
T ss_dssp HHHHHHHHHG-G-GCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-c-CCHHHHHHHHHHH
Confidence 1222333332 2 6888888776543
No 115
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=51.82 E-value=14 Score=32.59 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=29.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|||.| ++.-|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 1 mkI~v-s~kGGvGKTt~a~~LA~~la~~g---~~VlliD~ 36 (254)
T 3kjh_A 1 MKLAV-AGKGGVGKTTVAAGLIKIMASDY---DKIYAVDG 36 (254)
T ss_dssp CEEEE-ECSSSHHHHHHHHHHHHHHTTTC---SCEEEEEE
T ss_pred CEEEE-ecCCCCCHHHHHHHHHHHHHHCC---CeEEEEeC
Confidence 68999 66677899999999999999886 36777764
No 116
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=51.75 E-value=18 Score=33.42 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=28.5
Q ss_pred CCCCcccccchhh--hccCCCCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 42 DDCEEDDESTVEL--MQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 42 ~~~~~~~~~~~~~--~~~~~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
..+-.|.++++.. .+....+++||..+++.-|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 18 ~~~~~~~~~~l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G---~~VlliD~ 77 (307)
T 3end_A 18 IPTGADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG---KRVLQIGC 77 (307)
T ss_dssp ----------------------CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred CCcCccccchhhhhhccccccCCceEEEEECCCCccHHHHHHHHHHHHHHCC---CeEEEEeC
Confidence 3444555566533 3333334455444446667899999999999999986 36777764
No 117
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=51.33 E-value=18 Score=31.79 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=21.7
Q ss_pred CCeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 62 TKNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 62 ~~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
.||||+++ ...|+=...++..++++|.+.
T Consensus 3 ~m~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 32 (215)
T 3giu_A 3 AMHILVTGFAPFDNQNINPSWEAVTQLEDI 32 (215)
T ss_dssp -CEEEEEEECCCTTCSCCHHHHHHHHSCSE
T ss_pred CcEEEEEecCCCCCCCCChHHHHHHHhccc
Confidence 47999998 457644567888899999765
No 118
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=51.13 E-value=1.3e+02 Score=26.61 Aligned_cols=156 Identities=11% Similarity=0.025 Sum_probs=68.6
Q ss_pred HHHHhhCCCEEEECCccc-----chHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHH----HHHH
Q 012492 158 AGLMEYKPDIIISVHPLM-----QHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVA----KRAS 228 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~-----~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~----~~l~ 228 (462)
+.+...++|-||...... ....+..++. .++|+|.+..+... ...+.+.+-..... +.+.
T Consensus 65 ~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~~~~~~~~-------~~~~~V~~d~~~~~~~a~~~L~ 133 (298)
T 3tb6_A 65 ENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAMINASYAE-------LAAPSFTLDDVKGGMMAAEHLL 133 (298)
T ss_dssp HHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEEESSCCTT-------CSSCEEEECHHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEEecccccccCCcHHHHHHHHh----cCCCEEEEecCcCC-------CCCCEEEeCcHHHHHHHHHHHH
Confidence 335578999888765321 1111222332 48999876554321 12344444333333 3344
Q ss_pred HcCCCCCcEEEcCCCCChhhhc-ccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCC--ce
Q 012492 229 YFGLEVSQIRVFGLPIRPSFVR-AVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPI--GQ 305 (462)
Q Consensus 229 ~~gi~~~~i~v~g~pv~~~~~~-~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~--~~ 305 (462)
+.|. .+|.+++.+-...... ...-. +..++.|++.....+.............+.+..+++. +++ ..
T Consensus 134 ~~G~--~~i~~i~~~~~~~~~~R~~gf~-~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~ 203 (298)
T 3tb6_A 134 SLGH--THMMGIFKADDTQGVKRMNGFI-QAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEK-------NSKHMPT 203 (298)
T ss_dssp HTTC--CSEEEEEESSSHHHHHHHHHHH-HHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHH-------TTTSCCS
T ss_pred HCCC--CcEEEEcCCCCccHHHHHHHHH-HHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhc-------CCCCCCe
Confidence 4553 4676665433211110 00001 2223456654433333221111111123333433332 233 33
Q ss_pred EEEEccCCH---HHHHHHhhccC--CCCeEEeccc
Q 012492 306 LIIICGRNR---TLASTLQSEEW--KIPVKVRGFE 335 (462)
Q Consensus 306 ~lvv~G~~~---~l~~~~~~~~~--~~~V~~~g~~ 335 (462)
.++ |..+. ...+.+++.++ +.+|.++||-
T Consensus 204 ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 237 (298)
T 3tb6_A 204 AIL-CYNDEIALKVIDMLREMDLKVPEDMSIVGYD 237 (298)
T ss_dssp EEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred EEE-EeCcHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 343 44332 23455666665 4788888885
No 119
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=50.91 E-value=16 Score=31.85 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=26.2
Q ss_pred CCCCeEEEEecCCC---chHH-HHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 60 ERTKNVLILMSDTG---GGHR-ASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 60 ~~~~kIli~~~~~G---~Gh~-~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
.+|||||++.++.= ++.. ..+..+++.+++.++ +.++.+.|+.+
T Consensus 2 ~mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~-g~ev~~~dL~~ 49 (211)
T 3p0r_A 2 NAMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHP-NDTVVELDLYK 49 (211)
T ss_dssp --CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCT-TSEEEEEEGGG
T ss_pred cccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC-CCeEEEEECCC
Confidence 36899999987741 2322 233456666766633 35778888764
No 120
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=50.52 E-value=20 Score=29.62 Aligned_cols=36 Identities=19% Similarity=0.014 Sum_probs=25.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
|||+|+..|.-|.-...|.+|++.|.+.|. ++.+.|
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~---~v~~~~ 36 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGV---AVEMVD 36 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCC---eEEEEE
Confidence 789999877534677788899999988763 445554
No 121
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=49.99 E-value=15 Score=29.65 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=24.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
||||+|+..|.-|.....|..|++.|...+.
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~ 31 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAGF 31 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCCC
Confidence 5799999877534777888899999987753
No 122
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=49.61 E-value=74 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=23.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+|.++-+|.| | +.+.+++.+.-|+...+++.|.
T Consensus 1 ~~IgvfDSG~G-g-----ltv~~~l~~~~P~~~~iy~~D~ 34 (254)
T 1b73_A 1 MKIGIFDSGVG-G-----LTVLKAIRNRYRKVDIVYLGDT 34 (254)
T ss_dssp CEEEEEESSSG-G-----GTHHHHHHHHSTTCEEEEEECT
T ss_pred CcEEEEECCcc-H-----HHHHHHHHHhCCCCcEEEeecC
Confidence 68999988885 4 3455666666666667777774
No 123
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=48.68 E-value=1.3e+02 Score=25.95 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.0
Q ss_pred HHHHHHHHhhCCCEEEECCc
Q 012492 154 KEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~ 173 (462)
..+.+.+++++||+|++.+.
T Consensus 69 ~~~~~~l~~~~~Dliv~a~y 88 (209)
T 1meo_A 69 SAIDLVLEEFSIDIVCLAGF 88 (209)
T ss_dssp HHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCEEEEcch
Confidence 35667899999999988764
No 124
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=48.28 E-value=1.4e+02 Score=27.16 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhCCCEEEECCc
Q 012492 153 AKEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 153 ~~~l~~~l~~~kPDvVi~~~~ 173 (462)
-..+.+.+++++||+|++.+.
T Consensus 155 ~~~~~~~l~~~~~Dlivla~y 175 (286)
T 3n0v_A 155 ERKVLQVIEETGAELVILARY 175 (286)
T ss_dssp HHHHHHHHHHHTCSEEEESSC
T ss_pred HHHHHHHHHhcCCCEEEeccc
Confidence 345678899999999998774
No 125
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=48.01 E-value=1.4e+02 Score=27.14 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=22.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
++|.|+-+++| | +.+.+++.+.-|+...+++.|.
T Consensus 23 ~~IGvfDsG~G-g-----ltv~~~i~~~~P~~~~iy~~D~ 56 (286)
T 2jfq_A 23 KPIGVIDSGVG-G-----LTVAKEIMRQLPNETIYYLGDI 56 (286)
T ss_dssp SCEEEEESSST-T-----HHHHHHHHHHCTTCCEEEEECT
T ss_pred CcEEEEeCCCC-c-----HHHHHHHHHHCCCccEEEeccC
Confidence 57999977775 3 4556666666665566777764
No 126
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=47.13 E-value=31 Score=27.55 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=24.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
|||+|+..|..|-....|..|++.|.+.|. ++.+.+
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~---~v~~~~ 36 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGY---EVDSRD 36 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTC---EEEEEE
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCC---eeEEEe
Confidence 689999877532455667788888887763 555444
No 127
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=47.03 E-value=1.5e+02 Score=26.54 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=23.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
++|.|+-+|.| | +.+.+++.+.-|+...+++.|.
T Consensus 4 ~~IgvfDSGvG-G-----ltv~~~i~~~lP~~~~iy~~D~ 37 (267)
T 2gzm_A 4 RAIGVIDSGVG-G-----LTVAKELIRQLPKERIIYLGDT 37 (267)
T ss_dssp SCEEEEESSST-T-----HHHHHHHHHHCTTSCEEEEECT
T ss_pred CcEEEEeCCcc-H-----HHHHHHHHHHCCCCCEEEecCC
Confidence 47999999985 4 3344666666665567777774
No 128
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=46.92 E-value=22 Score=33.32 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=31.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.|++|+|+++.-|-|-.+.|.+||.+|.++|. .|.++|.
T Consensus 12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~---rVLlvD~ 50 (324)
T 3zq6_A 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGK---KTLVIST 50 (324)
T ss_dssp TBCEEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHCCC---cEEEEeC
Confidence 45788888888888999999999999998864 5566553
No 129
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=46.25 E-value=22 Score=31.05 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=27.5
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.|.|++...|.|-.+.+.+||.+|.++| ..|.++|.
T Consensus 4 ~i~v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD~ 39 (237)
T 1g3q_A 4 IISIVSGKGGTGKTTVTANLSVALGDRG---RKVLAVDG 39 (237)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 4555556677899999999999999886 36677764
No 130
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=46.22 E-value=61 Score=30.58 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=20.0
Q ss_pred hcchheecCChh---hHHHHHHhCCCEEEec
Q 012492 344 ACDCIITKAGPG---TIAEALIRGLPIILND 371 (462)
Q Consensus 344 ~aD~vV~~sg~~---t~~EAla~G~PvI~~~ 371 (462)
.-|++|+.+|.. ..+-|-.+|+|+++..
T Consensus 92 ~PDvVi~~g~~~s~p~~laA~~~~iP~vihe 122 (365)
T 3s2u_A 92 RPVCVLGLGGYVTGPGGLAARLNGVPLVIHE 122 (365)
T ss_dssp CCSEEEECSSSTHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEcCCcchHHHHHHHHHcCCCEEEEe
Confidence 458898877632 3456788999999853
No 131
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=46.20 E-value=45 Score=29.34 Aligned_cols=64 Identities=3% Similarity=-0.017 Sum_probs=32.4
Q ss_pred CceEEEEccCCH-HHHHHHhhccCCCCeEEe--ccchhHHHHHHhcchheecCC----hhhHHHHHHhCCCEEEecCC
Q 012492 303 IGQLIIICGRNR-TLASTLQSEEWKIPVKVR--GFETQMEKWMGACDCIITKAG----PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 303 ~~~~lvv~G~~~-~l~~~~~~~~~~~~V~~~--g~~~~~~~l~~~aD~vV~~sg----~~t~~EAla~G~PvI~~~~~ 373 (462)
+..+.++..... ++.+..++ .++.+. .|.+ ..+..+|++|+..+ ...+.++...|+||-+.+.+
T Consensus 54 GA~VtVvap~~~~~l~~l~~~----~~i~~i~~~~~~---~dL~~adLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p 124 (223)
T 3dfz_A 54 GAAITVVAPTVSAEINEWEAK----GQLRVKRKKVGE---EDLLNVFFIVVATNDQAVNKFVKQHIKNDQLVNMASSF 124 (223)
T ss_dssp CCCEEEECSSCCHHHHHHHHT----TSCEEECSCCCG---GGSSSCSEEEECCCCTHHHHHHHHHSCTTCEEEC----
T ss_pred CCEEEEECCCCCHHHHHHHHc----CCcEEEECCCCH---hHhCCCCEEEECCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence 345666655432 33333332 345554 2322 45678999987665 22344444478888777764
No 132
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=45.21 E-value=41 Score=29.53 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=26.9
Q ss_pred CCCCeEEEEecCCC----chHHH-HHHHHHHHHhhhcCCce-EEEEEeccc
Q 012492 60 ERTKNVLILMSDTG----GGHRA-SAEAIRDAFKIEFGDEY-RIFVKDVCK 104 (462)
Q Consensus 60 ~~~~kIli~~~~~G----~Gh~~-~a~aLa~~L~~~g~~~~-~v~v~d~~~ 104 (462)
..|||||++.++.= ++... .+..+++.+++.++ +. ++.+.|+.+
T Consensus 2 ~~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~-~~~ev~~idL~~ 51 (223)
T 3u7i_A 2 NAMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELIS-NNETIEQINLYD 51 (223)
T ss_dssp -CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCC-SSCEEEEEETTT
T ss_pred CccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCC-CCCeEEEEECcC
Confidence 35899999987741 23322 23456666776654 34 778888754
No 133
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=45.03 E-value=1.4e+02 Score=25.07 Aligned_cols=77 Identities=19% Similarity=0.094 Sum_probs=39.8
Q ss_pred HhcchheecCC---hhhHHHHHHhCCCEEEecCCCCcccc--chHHHHHC--Ccee--e-eCCHH---HHHHHHHHHhcC
Q 012492 343 GACDCIITKAG---PGTIAEALIRGLPIILNDYIPGQEKG--NVPYVVDN--GAGV--F-TRSPK---ETARIVTEWFST 409 (462)
Q Consensus 343 ~~aD~vV~~sg---~~t~~EAla~G~PvI~~~~~~~~~~~--n~~~l~~~--G~g~--~-~~~~~---~la~~i~~ll~~ 409 (462)
+.++++|.-+| ...-+=|...-+|||..|...+.-.+ ....+++. |..+ + ++... .++-.|..+ .
T Consensus 61 ~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~~~~nAa~lAa~Il~~--~ 138 (174)
T 3lp6_A 61 RGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGA--A 138 (174)
T ss_dssp HTCCEEEEEEESSCCHHHHHHHHCSSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTCHHHHHHHHHHHHHT--T
T ss_pred CCCCEEEEecCchhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcCcchHHHHHHHHHHhC--C
Confidence 34678886555 33334456688999999976432111 11123332 4222 1 22322 233333332 6
Q ss_pred CHHHHHHHHHHH
Q 012492 410 KTDELKRMSENA 421 (462)
Q Consensus 410 d~~~~~~m~~~a 421 (462)
|+++++++.+.-
T Consensus 139 d~~l~~kl~~~r 150 (174)
T 3lp6_A 139 NPQLRARIVAFQ 150 (174)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 888888876543
No 134
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=44.51 E-value=42 Score=27.58 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=28.7
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+..+||+|+..|.-|.-...|.+|++.|.+.| +++.+.|+
T Consensus 2 ~~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g---~~v~~~~~ 41 (159)
T 3fni_A 2 KAETSIGVFYVSEYGYSDRLAQAIINGITKTG---VGVDVVDL 41 (159)
T ss_dssp CCCCEEEEEECTTSTTHHHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHHHHCC---CeEEEEEC
Confidence 34568999988753467777889999998876 35555553
No 135
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=44.45 E-value=46 Score=28.95 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=32.0
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcC
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPS 220 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s 220 (462)
..||+||...+.....++.-+.. .+||+|.++ |.+ +.+ ..+|..+-.+
T Consensus 114 ~~PdlliV~Dp~~e~~ai~EA~~----l~IPvIalv-DTn-~~p----~~Vd~~IP~N 161 (208)
T 1vi6_A 114 REPEVVFVNDPAIDKQAVSEATA----VGIPVVALC-DSN-NSS----ADVDLVIPTN 161 (208)
T ss_dssp CCCSEEEESCTTTTHHHHHHHHH----TTCCEEEEE-CTT-CCC----TTCSEEEESC
T ss_pred CCCCEEEEECCCcchhHHHHHHH----hCCCEEEEe-CCC-CCc----cccCEEEeCC
Confidence 36999999998877766666665 489999865 332 122 3567666544
No 136
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=44.44 E-value=21 Score=31.96 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=25.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
+.|+|.+.++|.|-...+.+|+++|+++|.
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 345566678999999999999999999974
No 137
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=44.24 E-value=1.6e+02 Score=26.96 Aligned_cols=20 Identities=5% Similarity=-0.037 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCCEEEECCc
Q 012492 154 KEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~ 173 (462)
..+.+.+++++||+|++.+.
T Consensus 161 ~~~~~~l~~~~~Dlivla~y 180 (292)
T 3lou_A 161 AQWLDVFETSGAELVILARY 180 (292)
T ss_dssp HHHHHHHHHHTCSEEEESSC
T ss_pred HHHHHHHHHhCCCEEEecCc
Confidence 45678899999999998774
No 138
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=44.04 E-value=26 Score=31.27 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=28.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+.|.|+++..|.|-.+.+.+||.+|.++|. .|.++|.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~---~VlliD~ 39 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGH---DVTIVDA 39 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCC---cEEEEEC
Confidence 345566666778999999999999998863 6677764
No 139
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=44.01 E-value=43 Score=25.68 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=23.4
Q ss_pred CCeEEEE-ecCCCchHHHH-HHHHHHHHhhhcC
Q 012492 62 TKNVLIL-MSDTGGGHRAS-AEAIRDAFKIEFG 92 (462)
Q Consensus 62 ~~kIli~-~~~~G~Gh~~~-a~aLa~~L~~~g~ 92 (462)
+|||+.+ .|++|--|... +.+|-++-+++|+
T Consensus 2 ~mkivaVtaCptGiAhTymAAeaLekaA~~~G~ 34 (106)
T 2m1z_A 2 KRKIIAVTACATGVAHTYMAAQALKKGAKKMGN 34 (106)
T ss_dssp CCEEEEEEECSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccEEEEEECCCcHHHHHHHHHHHHHHHHHCCC
Confidence 4676655 58898888887 5688888888875
No 140
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=43.96 E-value=18 Score=30.00 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
.||||+|+..|..|.....|..|++.|...|.
T Consensus 8 ~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~ 39 (167)
T 1ykg_A 8 EMPGITIISASQTGNARRVAEALRDDLLAAKL 39 (167)
T ss_dssp ----CEEEEECSSSHHHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHHCCC
Confidence 46789998877533666778899999988763
No 141
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=43.87 E-value=29 Score=32.88 Aligned_cols=39 Identities=8% Similarity=0.069 Sum_probs=31.7
Q ss_pred CCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 60 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
..|++|+|+++.-|-|-.+.|.+||..|.+.|. .|.++|
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~---rVLlvD 61 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGL---KVVIVS 61 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSC---CEEEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCC---eEEEEe
Confidence 356788888887888999999999999998864 566665
No 142
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=43.74 E-value=46 Score=29.89 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=32.2
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcC
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPS 220 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s 220 (462)
..||+||+..+.....++.-+.. .+||+|.++ |.+ +.+ ..+|..|-.+
T Consensus 150 ~~PdlliV~Dp~~e~~AI~EA~~----lgIPvIalv-DTn-~dp----~~VDy~IP~N 197 (253)
T 3bch_A 150 REPRLLVVTDPRADHQPLTEASY----VNLPTIALC-NTD-SPL----RYVDIAIPCN 197 (253)
T ss_dssp CSCSEEEESCTTTTHHHHHHHHH----TTCCEEEEE-CTT-CCC----TTCSEEEESC
T ss_pred CCCCEEEEECCCccchHHHHHHH----hCCCEEEEE-cCC-CCc----ccCceEeecC
Confidence 46999999998877776666665 489999765 322 122 3467766544
No 143
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=43.46 E-value=1.7e+02 Score=26.26 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=22.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
..|.|+=+|.| |.. +++++.+.-|+...+++.|.
T Consensus 8 ~pIgvfDSGvG-GLt-----v~~~i~~~lp~~~~iy~~D~ 41 (268)
T 3out_A 8 RPIGVFDSGIG-GLT-----IVKNLMSILPNEDIIYFGDI 41 (268)
T ss_dssp SCEEEEESSST-THH-----HHHHHHHHCTTCCEEEEECT
T ss_pred CcEEEEECCCC-hHH-----HHHHHHHHCCCCcEEEecCC
Confidence 46999999996 532 33555555555556777764
No 144
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=43.29 E-value=31 Score=30.87 Aligned_cols=37 Identities=8% Similarity=0.160 Sum_probs=28.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+.|.|+++..|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G---~~VlliD~ 55 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQG---KKVGILDA 55 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCC---CeEEEEeC
Confidence 34555556667899999999999999886 36677764
No 145
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=43.24 E-value=1.9e+02 Score=26.31 Aligned_cols=20 Identities=10% Similarity=0.208 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCCEEEECCc
Q 012492 154 KEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~ 173 (462)
..+.+.+++++||+|++.+.
T Consensus 156 ~~~~~~l~~~~~Dlivlagy 175 (288)
T 3obi_A 156 AAITALIAQTHTDLVVLARY 175 (288)
T ss_dssp HHHHHHHHHHTCCEEEESSC
T ss_pred HHHHHHHHhcCCCEEEhhhh
Confidence 45678899999999998764
No 146
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=43.05 E-value=1.5e+02 Score=26.67 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=22.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
++|.|+-++.| | +.+.+++.+.-|+...+++.|.
T Consensus 8 ~~IgvfDSGvG-G-----ltv~~~i~~~lP~~~~iy~~D~ 41 (276)
T 2dwu_A 8 SVIGVLDSGVG-G-----LTVASEIIRQLPKESICYIGDN 41 (276)
T ss_dssp CEEEEEESSST-T-----HHHHHHHHHHCTTSCEEEEECG
T ss_pred CeEEEEeCCcc-h-----HHHHHHHHHhCCCCcEEEccCC
Confidence 58999988885 4 3344566666555556777774
No 147
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=42.81 E-value=30 Score=31.56 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=27.8
Q ss_pred CCeEEEEecCCCchHHH---HHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRA---SAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~---~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+|||+|++++.-..|.. .+..++++|++.|+ ++++.|.
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~---~v~~~~~ 42 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI---DAYPVDP 42 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTC---EEEEECT
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCC---eEEEEec
Confidence 57999998765335555 66789999999874 6666653
No 148
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=42.73 E-value=44 Score=28.19 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=27.7
Q ss_pred CCeEEEEecCCC--chHH-HHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 62 TKNVLILMSDTG--GGHR-ASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 62 ~~kIli~~~~~G--~Gh~-~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
||||+++.++.- .|+. ..+..+++.+++.|+ ..++.+.|+.+
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~-~~~v~~~dl~~ 45 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHV-ADEITVRDLAA 45 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCT-TCEEEEEETTT
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCC-CCeEEEEeccC
Confidence 689999987753 2543 335577888888763 24677777643
No 149
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=42.62 E-value=1.8e+02 Score=25.82 Aligned_cols=152 Identities=16% Similarity=0.065 Sum_probs=70.1
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHH----HHHHHcCCC
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVA----KRASYFGLE 233 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~----~~l~~~gi~ 233 (462)
+.+...++|-||..........+..++. .++|+|.+..+.. ....+.+.+-+.... +.+.+.|.
T Consensus 59 ~~l~~~~vdGiIi~~~~~~~~~~~~l~~----~~iPvV~~~~~~~-------~~~~~~V~~D~~~~~~~a~~~L~~~G~- 126 (294)
T 3qk7_A 59 HLVETRRVDALIVAHTQPEDFRLQYLQK----QNFPFLALGRSHL-------PKPYAWFDFDNHAGASLAVKRLLELGH- 126 (294)
T ss_dssp HHHHHTCCSEEEECSCCSSCHHHHHHHH----TTCCEEEESCCCC-------SSCCEEEEECHHHHHHHHHHHHHHTTC-
T ss_pred HHHHcCCCCEEEEeCCCCChHHHHHHHh----CCCCEEEECCCCC-------CCCCCEEEcChHHHHHHHHHHHHHCCC-
Confidence 4466789998887664433222222333 3899987654421 122344444333333 33445553
Q ss_pred CCcEEEcCCCCChhhhcccCCh-H---HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEE
Q 012492 234 VSQIRVFGLPIRPSFVRAVISK-D---NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIII 309 (462)
Q Consensus 234 ~~~i~v~g~pv~~~~~~~~~~~-~---~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv 309 (462)
.+|.+++.+....... .| + +..++.|++.+...+ +.+ ........+.+..+++ . .++...++
T Consensus 127 -~~I~~i~~~~~~~~~~---~R~~Gf~~al~~~g~~~~~~~~-~~~-~~~~~~~~~~~~~~l~---~----~~~~~ai~- 192 (294)
T 3qk7_A 127 -QRIAFVSTDARISYVD---QRLQGYVQTMSEAGLMPLAGYL-QKA-DPTRPGGYLAASRLLA---L----EVPPTAII- 192 (294)
T ss_dssp -CCEEEEEESSCCHHHH---HHHHHHHHHHHTTTCCCCTTCE-EEE-CSSHHHHHHHHHHHHH---S----SSCCSEEE-
T ss_pred -ceEEEEeCCcccchHH---HHHHHHHHHHHHCCCCCChhHe-ecC-CCCHHHHHHHHHHHHc---C----CCCCcEEE-
Confidence 4777665443221111 11 1 122335665433322 232 2222223333333332 2 22333343
Q ss_pred ccCCH---HHHHHHhhccC--CCCeEEeccc
Q 012492 310 CGRNR---TLASTLQSEEW--KIPVKVRGFE 335 (462)
Q Consensus 310 ~G~~~---~l~~~~~~~~~--~~~V~~~g~~ 335 (462)
|..+. ...+.+++.++ ++.|.++||-
T Consensus 193 ~~nd~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 193 TDCNMLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp ESSHHHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred ECCHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 44332 23455666654 4788888885
No 150
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=42.56 E-value=2.1e+02 Score=26.47 Aligned_cols=71 Identities=7% Similarity=-0.074 Sum_probs=35.9
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCH----HHHHHHHHcCCC
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSK----EVAKRASYFGLE 233 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~----~~~~~l~~~gi~ 233 (462)
+.+...++|-||..........+..+.. .++|+|.+-.... ....+.+.+-+. ...+.+.+.|.
T Consensus 122 ~~l~~~~vdGiIi~~~~~~~~~~~~l~~----~~iPvV~i~~~~~-------~~~~~~V~~D~~~~~~~a~~~L~~~G~- 189 (366)
T 3h5t_A 122 QLVNNAAVDGVVIYSVAKGDPHIDAIRA----RGLPAVIADQPAR-------EEGMPFIAPNNRKAIAPAAQALIDAGH- 189 (366)
T ss_dssp HHHHTCCCSCEEEESCCTTCHHHHHHHH----HTCCEEEESSCCS-------CTTCCEEEECHHHHTHHHHHHHHHTTC-
T ss_pred HHHHhCCCCEEEEecCCCChHHHHHHHH----CCCCEEEECCccC-------CCCCCEEEeChHHHHHHHHHHHHHCCC-
Confidence 4466789997765543222211222232 2799987644321 122344444332 33345555564
Q ss_pred CCcEEEcC
Q 012492 234 VSQIRVFG 241 (462)
Q Consensus 234 ~~~i~v~g 241 (462)
.+|-+++
T Consensus 190 -r~I~~i~ 196 (366)
T 3h5t_A 190 -RKIGILS 196 (366)
T ss_dssp -CSEEEEE
T ss_pred -CcEEEEe
Confidence 4777766
No 151
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=42.54 E-value=29 Score=32.14 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEecCCCchHH---HHHHHHHHHHhhhcCCceEEEEEe
Q 012492 58 GAERTKNVLILMSDTGGGHR---ASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 58 ~~~~~~kIli~~~~~G~Gh~---~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
+..++|||++++++.-.=|. ..+.+++++|++.|+ ++..+|
T Consensus 9 ~~~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~---~v~~i~ 52 (317)
T 4eg0_A 9 DPKRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGI---DAHPFD 52 (317)
T ss_dssp CGGGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTC---EEEEEC
T ss_pred chhhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCC---EEEEEe
Confidence 34567899999987633343 368899999999874 667665
No 152
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=42.21 E-value=43 Score=28.27 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHhcchhe-ecCChhh-------------HHHHHHhCCCEEEecCC-------CCccccchHHHHHCCceeeeCCH
Q 012492 339 EKWMGACDCII-TKAGPGT-------------IAEALIRGLPIILNDYI-------PGQEKGNVPYVVDNGAGVFTRSP 396 (462)
Q Consensus 339 ~~l~~~aD~vV-~~sg~~t-------------~~EAla~G~PvI~~~~~-------~~~~~~n~~~l~~~G~g~~~~~~ 396 (462)
..+-..+|++| .|...+| ..=+++.++|+|+.|.- +..+ .|...|.+.|.-++-+.+
T Consensus 71 i~l~~~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~Pamn~~m~~~p~~~-~Nl~~L~~~G~~iv~P~~ 148 (175)
T 3qjg_A 71 VDIANKHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPNMNLRMWENPVTQ-NNIRLLKDYGVSIYPANI 148 (175)
T ss_dssp HHHHHTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEECEEHHHHTCHHHH-HHHHHHHHTTCEECCCCE
T ss_pred ccccchhCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEecCChhhhcCHHHH-HHHHHHHHCCCEEECCCC
Confidence 35667899855 4432111 22367789999999942 1122 378888887765544443
No 153
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=41.75 E-value=2.1e+02 Score=26.23 Aligned_cols=36 Identities=8% Similarity=-0.046 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCc--hHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 62 TKNVLILMSDTGG--GHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 62 ~~kIli~~~~~G~--Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
.++|.++.++... -.......+.+++++.| +.+.+.
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g---~~~~~~ 40 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLG---LDLRIL 40 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHT---CEEEEE
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcC---CeEEEE
Confidence 3689999887632 12334446667777765 455544
No 154
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=41.55 E-value=46 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=20.9
Q ss_pred CCCCCCeEEEEecCCCchHHHHHH-HHHHHHhhhc
Q 012492 58 GAERTKNVLILMSDTGGGHRASAE-AIRDAFKIEF 91 (462)
Q Consensus 58 ~~~~~~kIli~~~~~G~Gh~~~a~-aLa~~L~~~g 91 (462)
+..+|+||+++ |+.|.|+...+. .|.+.+.+.|
T Consensus 14 ~~~~~~kIlvv-C~sG~gTS~m~~~kl~~~~~~~g 47 (110)
T 3czc_A 14 GRGSMVKVLTA-CGNGMGSSMVIKMKVENALRQLG 47 (110)
T ss_dssp ----CEEEEEE-CCCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCcEEEEE-CCCcHHHHHHHHHHHHHHHHHcC
Confidence 34456788754 555678877777 7778887765
No 155
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=41.53 E-value=24 Score=29.98 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=27.4
Q ss_pred eEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 64 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 64 kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.|.|+++.-|.|-.+.+.+||..|.++|. .|.++|.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~---~vlliD~ 38 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGY---NIAVVDT 38 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCC---eEEEEEC
Confidence 44455556678999999999999998863 6677764
No 156
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=41.48 E-value=27 Score=30.91 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCeE-EEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNV-LILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kI-li~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+|| .|++..-|.|-.+.+.+||.+|.++| ..|.++|.
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD~ 39 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKG---KKTVVIDF 39 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCC---CcEEEEEC
Confidence 3454 45555567799999999999999886 36677764
No 157
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}
Probab=41.39 E-value=1.3e+02 Score=27.46 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=30.8
Q ss_pred CCh-hhHHHHHHhCCCEEEecCCC-CccccchHHHHHCCceeeeCCHHHHHH
Q 012492 352 AGP-GTIAEALIRGLPIILNDYIP-GQEKGNVPYVVDNGAGVFTRSPKETAR 401 (462)
Q Consensus 352 sg~-~t~~EAla~G~PvI~~~~~~-~~~~~n~~~l~~~G~g~~~~~~~~la~ 401 (462)
||. .|.-.|+-.|+||.+.|... .........|.+.| +.++.+++++.+
T Consensus 228 SGsliTA~~Ale~gR~VfavPG~i~~~~s~G~n~LI~~G-A~lv~~~~Dil~ 278 (288)
T 3uqz_A 228 SGSLITCERAMEEGRDVFAIPGSILDGLSDGCHHLIQEG-AKLVTSGQDVLA 278 (288)
T ss_dssp CHHHHHHHHHHHTTCEEEECCCCSSSSTTHHHHHHHHTT-CEECSSHHHHHH
T ss_pred ChHHHHHHHHHHcCCeEEEECCCCCCccchHHHHHHHCC-CEEECCHHHHHH
Confidence 443 36677999999999988542 22222234466778 556667666544
No 158
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=41.09 E-value=39 Score=29.36 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=21.5
Q ss_pred CeEEEEe-cCCCchHHHHHHHHHHHHhhh
Q 012492 63 KNVLILM-SDTGGGHRASAEAIRDAFKIE 90 (462)
Q Consensus 63 ~kIli~~-~~~G~Gh~~~a~aLa~~L~~~ 90 (462)
||||+++ ...|+=...++..++++|.+.
T Consensus 1 m~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 29 (206)
T 1iu8_A 1 MKILLTGFEPFGGDDKNPTMDIVEALSER 29 (206)
T ss_dssp CCEEEEEECCCTTCSCCHHHHHHHHHHHH
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHHhccc
Confidence 6899998 456655667888899999876
No 159
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=40.97 E-value=27 Score=31.48 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=26.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
.|+.|+|.+.++|.|-...+..|+++|+++|.
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 34456677788999999999999999999974
No 160
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=40.87 E-value=1.5e+02 Score=27.32 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.5
Q ss_pred HHHHHHHHhhCCCEEEECCc
Q 012492 154 KEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~ 173 (462)
..+.+.+++++||+|++.+.
T Consensus 171 ~~~~~~l~~~~~DliVlagy 190 (302)
T 3o1l_A 171 AEVSRLVGHHQADVVVLARY 190 (302)
T ss_dssp HHHHHHHHHTTCSEEEESSC
T ss_pred HHHHHHHHHhCCCEEEHhHh
Confidence 45668899999999998774
No 161
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=40.52 E-value=56 Score=28.94 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=23.8
Q ss_pred CCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 164 KPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 164 kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
.||+||+..+.....++.-++. .+||+|.++
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~----l~IPvIaiv 187 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECIT----LGIPTICLI 187 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHT----TTCCEEECC
T ss_pred CCCEEEEeCCccccHHHHHHHH----hCCCEEEEe
Confidence 5999999998877765555554 499999754
No 162
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=40.35 E-value=24 Score=30.28 Aligned_cols=41 Identities=5% Similarity=0.069 Sum_probs=24.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
||++|+++++|.=.| +....|++++.+.-+...++.+.|+.
T Consensus 1 M~k~I~vi~GS~R~~--S~~~~la~~~~~~~~~~~~~~~idl~ 41 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKD--SLNHKLMKVLQKLAEGRLEFHLLHIG 41 (190)
T ss_dssp -CEEEEEEESCCSTT--CHHHHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCCEEEEEECCCCCC--CHHHHHHHHHHHhccCCCEEEEEecc
Confidence 467899998875222 23344556665544445677777653
No 163
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=40.22 E-value=2.2e+02 Score=25.98 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCCEEEECCc
Q 012492 154 KEVEAGLMEYKPDIIISVHP 173 (462)
Q Consensus 154 ~~l~~~l~~~kPDvVi~~~~ 173 (462)
..+.+.+++++||+|++.+.
T Consensus 155 ~~~~~~l~~~~~Dlivlagy 174 (287)
T 3nrb_A 155 SQIKNIVTQSQADLIVLARY 174 (287)
T ss_dssp HHHHHHHHHHTCSEEEESSC
T ss_pred HHHHHHHHHhCCCEEEhhhh
Confidence 45678899999999998774
No 164
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=39.89 E-value=66 Score=28.72 Aligned_cols=46 Identities=17% Similarity=0.021 Sum_probs=29.3
Q ss_pred hccCCCCCCeEEEEecCC-CchHH-HHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 55 MQIGAERTKNVLILMSDT-GGGHR-ASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 55 ~~~~~~~~~kIli~~~~~-G~Gh~-~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
.+...+.||||+++.+|. .+|.. ..+..+++.+++.| .++.+.|+.
T Consensus 27 ~~~~~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g---~eve~idL~ 74 (247)
T 2q62_A 27 RPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFG---AEVKVFDPS 74 (247)
T ss_dssp CCCCCCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTT---CEEEECCCT
T ss_pred hhhccCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCC---CEEEEEEhh
Confidence 445556788999999874 12444 34556777777654 466767653
No 165
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=39.78 E-value=1.6e+02 Score=24.37 Aligned_cols=30 Identities=27% Similarity=0.156 Sum_probs=20.1
Q ss_pred cchheecCC---hhhHHHHHHhCCCEEEecCCC
Q 012492 345 CDCIITKAG---PGTIAEALIRGLPIILNDYIP 374 (462)
Q Consensus 345 aD~vV~~sg---~~t~~EAla~G~PvI~~~~~~ 374 (462)
++++|.-+| ...-+=|...-+|||..|...
T Consensus 59 ~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~ 91 (163)
T 3ors_A 59 INIIIAGAGGAAHLPGMVASLTTLPVIGVPIET 91 (163)
T ss_dssp CCEEEEEEESSCCHHHHHHHHCSSCEEEEEECC
T ss_pred CcEEEEECCchhhhHHHHHhccCCCEEEeeCCC
Confidence 677776554 333344566889999999754
No 166
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=39.67 E-value=2e+02 Score=25.45 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=67.2
Q ss_pred HHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHH----HHHHHcCCCCC
Q 012492 160 LMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVA----KRASYFGLEVS 235 (462)
Q Consensus 160 l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~----~~l~~~gi~~~ 235 (462)
+...++|-||..........+..+. .++|+|.+..+.. ....+.+.+-+.... +.+.+.|. .
T Consensus 62 l~~~~vdgiIi~~~~~~~~~~~~~~-----~~iPvV~i~~~~~-------~~~~~~V~~D~~~~~~~a~~~L~~~G~--~ 127 (289)
T 3k9c_A 62 LMRERCEAAILLGTRFDTDELGALA-----DRVPALVVARASG-------LPGVGAVRGDDVAGITLAVDHLTELGH--R 127 (289)
T ss_dssp HTTTTEEEEEEETCCCCHHHHHHHH-----TTSCEEEESSCCS-------STTSEEEEECHHHHHHHHHHHHHHTTC--C
T ss_pred HHhCCCCEEEEECCCCCHHHHHHHH-----cCCCEEEEcCCCC-------CCCCCEEEeChHHHHHHHHHHHHHCCC--C
Confidence 5567899887665433322122222 2799987654332 122344444333332 34445553 5
Q ss_pred cEEEcCCCCChhhhcccCCh-H---HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEcc
Q 012492 236 QIRVFGLPIRPSFVRAVISK-D---NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICG 311 (462)
Q Consensus 236 ~i~v~g~pv~~~~~~~~~~~-~---~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G 311 (462)
+|.+++.+..... ..| + +..++.+++.+. .++ .+........+.+..+ |.. .++...++ |.
T Consensus 128 ~I~~i~~~~~~~~----~~R~~Gf~~al~~~g~~~~~--~~~-~~~~~~~~~~~~~~~~---l~~----~~~~~ai~-~~ 192 (289)
T 3k9c_A 128 NIAHIDGADAPGG----ADRRAGFLAAMDRHGLSASA--TVV-TGGTTETEGAEGMHTL---LEM----PTPPTAVV-AF 192 (289)
T ss_dssp SEEEECCTTSTTH----HHHHHHHHHHHHHTTCGGGE--EEE-CCCSSHHHHHHHHHHH---HTS----SSCCSEEE-ES
T ss_pred cEEEEeCCCCccH----HHHHHHHHHHHHHCCCCCCc--cEE-ECCCCHHHHHHHHHHH---HcC----CCCCCEEE-EC
Confidence 7877765543211 111 1 122345654222 222 2333322223333333 322 23333343 44
Q ss_pred CCH---HHHHHHhhccC--CCCeEEeccc
Q 012492 312 RNR---TLASTLQSEEW--KIPVKVRGFE 335 (462)
Q Consensus 312 ~~~---~l~~~~~~~~~--~~~V~~~g~~ 335 (462)
.+. ...+.+++.++ +++|.++||-
T Consensus 193 ~d~~A~g~~~al~~~g~~vP~di~vig~D 221 (289)
T 3k9c_A 193 NDRCATGVLDLLVRSGRDVPADISVVGYD 221 (289)
T ss_dssp SHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred ChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 332 23455666664 4789999885
No 167
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=38.90 E-value=52 Score=30.24 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=32.4
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcC
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPS 220 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s 220 (462)
..||+||+..+.....++.-++. .+||+|.++. .+ +. ...+|..|-.+
T Consensus 117 ~~PdlliV~Dp~~e~~AI~EA~~----lgIPvIalvD-Tn-~d----p~~VDy~IP~N 164 (295)
T 2zkq_b 117 REPRLLVVTDPRADHQPLTEASY----VNLPTIALCN-TD-SP----LRYVDIAIPCN 164 (295)
T ss_dssp CCCSEEEESCTTTTHHHHHHHHH----HTCCEEEEEC-TT-CC----CTTCSEEEESC
T ss_pred cCCCeEEEeCCCcchhHHHHHHH----hCCCEEEEec-CC-CC----cccCCEEEeCC
Confidence 46999999998877776666655 4899998652 22 11 23567777554
No 168
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=38.90 E-value=19 Score=30.97 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=25.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
|||||++.++.-.+....+.++++++++.|+ ++.+.|+.
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g~---ev~~~dL~ 39 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHTD---RFTVHELY 39 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCTT---TEEEEEHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCCC---eEEEEEch
Confidence 6899999877422323566778888887653 45666553
No 169
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=38.86 E-value=33 Score=30.02 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhh-cCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIE-FGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~-g~~~~~v~v~d~ 102 (462)
++.|.|+++.-|-|-.+.+.+||.+|.++ | ..|.++|.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g---~~VlliD~ 42 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPD---IHVLAVDI 42 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTT---CCEEEEEC
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcC---CCEEEEEC
Confidence 34455666667789999999999999987 6 36677764
No 170
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=38.77 E-value=2e+02 Score=25.27 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=20.2
Q ss_pred CCCeEEEEecCCCchH-HHHHHHHHHHHhhhcCCceEEEEE
Q 012492 61 RTKNVLILMSDTGGGH-RASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh-~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
+..+|.++.++..... ......+.+++++.| +.+.+.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g---~~~~~~ 44 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANK---YEALVA 44 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTT---CEEEEE
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcC---CEEEEE
Confidence 3468888887763222 223345666666664 455554
No 171
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=38.41 E-value=87 Score=30.58 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=21.7
Q ss_pred cchhhhccCCCCCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 50 STVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 50 ~~~~~~~~~~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
||.|--.. ++.+||||++.++ .+..+|+.+|.+.. ....+++.
T Consensus 10 ~~~~~~~~-~p~~m~ilvlG~g------gre~ala~~l~~s~-~v~~v~~~ 52 (442)
T 3lp8_A 10 GTLEAQTQ-GPGSMNVLVIGSG------GREHSMLHHIRKST-LLNKLFIA 52 (442)
T ss_dssp -----------CCEEEEEEECS------HHHHHHHHHHTTCT-TEEEEEEE
T ss_pred cceecccC-CCCCCEEEEECCC------hHHHHHHHHHHhCC-CCCEEEEE
Confidence 44443333 3456799999765 23456888888763 33455554
No 172
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=38.41 E-value=69 Score=28.13 Aligned_cols=54 Identities=19% Similarity=0.046 Sum_probs=33.3
Q ss_pred HHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC--------------hhhHHHHHHhCCCEEEecC
Q 012492 317 ASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG--------------PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 317 ~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg--------------~~t~~EAla~G~PvI~~~~ 372 (462)
.+.++.++. .+..+-..++..+.+..||.++.++| -..+-|+...|+|++-+-.
T Consensus 54 ~~al~~lG~--~~~~v~~~~d~~~~l~~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sA 121 (229)
T 1fy2_A 54 AEVLAPLGV--NVTGIHRVADPLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSA 121 (229)
T ss_dssp HHHHGGGTC--EEEETTSSSCHHHHHHHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETH
T ss_pred HHHHHHCCC--EEEEEeccccHHHHHhcCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECH
Confidence 344555442 34333323455578888999998876 1234566678999887653
No 173
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=38.39 E-value=51 Score=24.79 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=21.4
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEE
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~ 197 (462)
+.+++.+||+|+.+...+..-..-+.+..+....+|++.+
T Consensus 40 ~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~ 79 (120)
T 3f6p_A 40 EMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIML 79 (120)
T ss_dssp HHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 3467889999998875432211222222111146787654
No 174
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=38.37 E-value=86 Score=23.75 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=22.7
Q ss_pred HHHHhhCCCEEEECCccc--chHHH-HHHHHcCCCCCCeEEEEec
Q 012492 158 AGLMEYKPDIIISVHPLM--QHIPL-WVLKWQGLQKKVIFVTVIT 199 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~--~~~~~-~~~~~~~~~~~iP~v~~~~ 199 (462)
+.+++.+||+|+.+.... .+..+ ...+.......+|+|.+..
T Consensus 41 ~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 41 QQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeC
Confidence 346678999999987433 23211 1223221124788876543
No 175
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=38.24 E-value=1.7e+02 Score=24.32 Aligned_cols=77 Identities=18% Similarity=0.149 Sum_probs=39.2
Q ss_pred hcchheecCC---hhhHHHHHHhCCCEEEecCCCCcccc--chHHHHH--CCceee-eC-CH-H-----HHHHHHHHHhc
Q 012492 344 ACDCIITKAG---PGTIAEALIRGLPIILNDYIPGQEKG--NVPYVVD--NGAGVF-TR-SP-K-----ETARIVTEWFS 408 (462)
Q Consensus 344 ~aD~vV~~sg---~~t~~EAla~G~PvI~~~~~~~~~~~--n~~~l~~--~G~g~~-~~-~~-~-----~la~~i~~ll~ 408 (462)
.++++|.-+| ...-+=|...-+|||..|.....-.+ ....+++ .|..+. +. +. . .++-.|.. +
T Consensus 61 g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~-~- 138 (169)
T 3trh_A 61 GCAVFIAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAKNAAILAAQIIA-L- 138 (169)
T ss_dssp TEEEEEEEECSSCCHHHHHHHTCSSCEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCSTHHHHHHHHHHHHHHHH-T-
T ss_pred CCcEEEEECChhhhhHHHHHhcCCCCEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEecCCccchHHHHHHHHHHc-C-
Confidence 3677887555 23334456678999999986321111 1223334 454221 21 21 1 22223333 2
Q ss_pred CCHHHHHHHHHHHH
Q 012492 409 TKTDELKRMSENAL 422 (462)
Q Consensus 409 ~d~~~~~~m~~~a~ 422 (462)
.|++.++++.+.-.
T Consensus 139 ~d~~l~~kl~~~r~ 152 (169)
T 3trh_A 139 QDKSIAQKLVQQRT 152 (169)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68888888765533
No 176
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=37.72 E-value=3.9e+02 Score=28.24 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=32.7
Q ss_pred CeEEe-ccchhH-HHHHHhcchheecCC------hhhHHHHHHhCCCEEEec
Q 012492 328 PVKVR-GFETQM-EKWMGACDCIITKAG------PGTIAEALIRGLPIILND 371 (462)
Q Consensus 328 ~V~~~-g~~~~~-~~l~~~aD~vV~~sg------~~t~~EAla~G~PvI~~~ 371 (462)
+|.|+ +|-..+ ..++++||+...+|. |.+-|=+|..|.+.|.+-
T Consensus 596 KVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtL 647 (796)
T 2c4m_A 596 KVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTM 647 (796)
T ss_dssp EEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEES
T ss_pred EEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEecc
Confidence 56665 565444 467899999886653 677899999999999664
No 177
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=37.33 E-value=2.4e+02 Score=25.71 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=20.8
Q ss_pred HHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 159 GLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 159 ~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
.+...++|-||..........+..++. .++|+|.+.
T Consensus 119 ~l~~~~vdGiIi~~~~~~~~~~~~l~~----~~iPvV~i~ 154 (344)
T 3kjx_A 119 EMLSWRPSGVIIAGLEHSEAARAMLDA----AGIPVVEIM 154 (344)
T ss_dssp HHHTTCCSEEEEECSCCCHHHHHHHHH----CSSCEEEEE
T ss_pred HHHhCCCCEEEEECCCCCHHHHHHHHh----CCCCEEEEe
Confidence 355789998876553322221222333 489998763
No 178
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=37.13 E-value=33 Score=30.59 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+.|.|+++.-|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g---~~VlliD~ 43 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLG---KRVLLVDL 43 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHCC---CCEEEEEC
Confidence 344555556667899999999999999886 46777764
No 179
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=37.11 E-value=1e+02 Score=28.25 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=51.3
Q ss_pred EEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEc--cCCH-----HHHHHHhhccCCCCeEEecc-------c
Q 012492 270 AVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIIC--GRNR-----TLASTLQSEEWKIPVKVRGF-------E 335 (462)
Q Consensus 270 ~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~--G~~~-----~l~~~~~~~~~~~~V~~~g~-------~ 335 (462)
.++++||........++++.+++.... ++.+++++. +... .+++.+++++. .+|..+.- .
T Consensus 28 ~l~iiGGgedk~~~~~i~~~~v~lagg-----~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~-~~v~~L~i~~r~~a~~ 101 (291)
T 3en0_A 28 AILIIGGAEDKVHGREILQTFWSRSGG-----NDAIIGIIPSASREPLLIGERYQTIFSDMGV-KELKVLDIRDRAQGDD 101 (291)
T ss_dssp CEEEECSSCCSSSCCHHHHHHHHHTTG-----GGCEEEEECTTCSSHHHHHHHHHHHHHHHCC-SEEEECCCCSGGGGGC
T ss_pred eEEEEECCCCccChHHHHHHHHHHcCC-----CCCeEEEEeCCCCChHHHHHHHHHHHHHcCC-CeeEEEEecCccccCC
Confidence 466777776532233445555544322 223444442 2222 23444455554 24444422 2
Q ss_pred hhHHHHHHhcchheecCC--------------hhhHHHHHHhC-CCEEEec
Q 012492 336 TQMEKWMGACDCIITKAG--------------PGTIAEALIRG-LPIILND 371 (462)
Q Consensus 336 ~~~~~l~~~aD~vV~~sg--------------~~t~~EAla~G-~PvI~~~ 371 (462)
+++.+.+..||+++..+| -..+.|+...| +|++-+-
T Consensus 102 ~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtS 152 (291)
T 3en0_A 102 SGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTS 152 (291)
T ss_dssp HHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEET
T ss_pred HHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeC
Confidence 456788999999887665 12356666778 7777554
No 180
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=36.10 E-value=48 Score=29.86 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=24.9
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
..||+||+..+.....++.-++. .+||+|.++
T Consensus 157 ~~Pdll~V~Dp~~e~~Ai~EA~~----l~IPvIaiv 188 (256)
T 2vqe_B 157 RLPDAIFVVDPTKEAIAVREARK----LFIPVIALA 188 (256)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHH----TTCCCEECC
T ss_pred cCCCEEEEeCCccchHHHHHHHH----cCCCEEEEe
Confidence 38999999998877766666665 489999754
No 181
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.07 E-value=64 Score=27.90 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=32.1
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe-cCCCCCCcccccCCCcEEEEcC
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI-TDLNTCHPTWFHPRVNRCYCPS 220 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~-~d~~~~~~~~~~~~~d~~i~~s 220 (462)
..||++|...|.....++.-+.. .+||+|.++ +|.. + ..+|..+-.+
T Consensus 110 ~~Pdllvv~Dp~~d~~ai~EA~~----l~IP~Ial~DTn~~---p----~~Vd~~IP~N 157 (202)
T 3j20_B 110 FEPDVLIVTDPRADHQAMREAVE----IGIPIVALVDTENL---L----SYVDLAIPTN 157 (202)
T ss_dssp CCCSEEEESCTTTSHHHHHHHHH----HTCCEEEEECTTCC---C----TTCCEEEECC
T ss_pred cCCCeEEEeCCccchHHHHHHHH----cCCCEEEEEcCCCC---c----cccCEEEeCC
Confidence 38999999999887776666665 389999765 3332 1 3467666444
No 182
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=35.83 E-value=47 Score=28.59 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=26.6
Q ss_pred CCeEEEEecCC-C-chHH-HHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 62 TKNVLILMSDT-G-GGHR-ASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 62 ~~kIli~~~~~-G-~Gh~-~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
|||||++.++. + +|+. ..+..+++.+++.++ +.++.+.|+.+
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~-g~~v~~~dL~~ 45 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHP-QARVARREVGR 45 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCT-TCCEEEEESSS
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CCeEEEEECCC
Confidence 78999998774 2 2333 335567777877632 24677777653
No 183
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=35.45 E-value=36 Score=26.03 Aligned_cols=48 Identities=6% Similarity=0.030 Sum_probs=28.8
Q ss_pred eEEEEccCCH-------HHHHHHhhccCCCCeEEeccchhHHHHHHhcchheecCC
Q 012492 305 QLIIICGRNR-------TLASTLQSEEWKIPVKVRGFETQMEKWMGACDCIITKAG 353 (462)
Q Consensus 305 ~~lvv~G~~~-------~l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV~~sg 353 (462)
+++++||.+- .+.+.+++.+++..|.-.+. .++...+..+|++++.+.
T Consensus 5 kIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~-~~~~~~~~~~Dvil~~pq 59 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPE-TLAGEKGQNADVVLLGPQ 59 (106)
T ss_dssp EEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECS-SSTTHHHHHCSEEEECTT
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecH-HHHHhhccCCCEEEEccc
Confidence 5778888774 13344445555433333333 456667888999887664
No 184
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=35.21 E-value=2.4e+02 Score=25.02 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCchHH-HHHHHHHHHHhhhcCCceEEEE
Q 012492 62 TKNVLILMSDTGGGHR-ASAEAIRDAFKIEFGDEYRIFV 99 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~-~~a~aLa~~L~~~g~~~~~v~v 99 (462)
.++|.++..+.+...- .....+.+++++.| +.+.+
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g---~~~~~ 39 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALN---VTVEY 39 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHT---CEEEE
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcC---CEEEE
Confidence 4689998877643333 33346667777765 45554
No 185
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=35.01 E-value=60 Score=28.59 Aligned_cols=39 Identities=5% Similarity=0.041 Sum_probs=26.0
Q ss_pred CCeEEEEecCCC-chH-HHHHHHHHHHHhhh-cCCceEEEEEecc
Q 012492 62 TKNVLILMSDTG-GGH-RASAEAIRDAFKIE-FGDEYRIFVKDVC 103 (462)
Q Consensus 62 ~~kIli~~~~~G-~Gh-~~~a~aLa~~L~~~-g~~~~~v~v~d~~ 103 (462)
||||+++.+|.- .|+ ...+.++++.|++. | .++.+.|+.
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g---~~v~~~dl~ 42 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNN---VDISFRTPF 42 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSC---CEEEEECTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcC---CeEEEEEcc
Confidence 679999988741 244 44566788888876 5 356666654
No 186
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=34.86 E-value=67 Score=27.37 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=26.8
Q ss_pred CCeEEEEecCCC---chHHH-HHHHHHHHHhhhcCCceEEEEEecc
Q 012492 62 TKNVLILMSDTG---GGHRA-SAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 62 ~~kIli~~~~~G---~Gh~~-~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
||||+++.++.- .|+.. .+..+++.+++.|+ +.++.+.|+.
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~-~~~v~~~dL~ 45 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNP-SDEIEILDVY 45 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCC-CCeEEEeeCC
Confidence 679999987742 24443 34567888888764 2477777765
No 187
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=34.62 E-value=44 Score=29.59 Aligned_cols=40 Identities=13% Similarity=-0.021 Sum_probs=23.8
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEE
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~ 197 (462)
.+-++|+||++|..+|-.....=..+|..-...++|+|.+
T Consensus 58 ~~~~~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI 97 (283)
T 1qv9_A 58 DIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVII 97 (283)
T ss_dssp HHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEE
T ss_pred hhhhhcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEE
Confidence 4458999999998887654331122331100148999854
No 188
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=34.11 E-value=2.4e+02 Score=24.81 Aligned_cols=167 Identities=10% Similarity=-0.010 Sum_probs=77.4
Q ss_pred HHHHhhCCCEEEECCcccch--HHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHH----HHHHHHHcC
Q 012492 158 AGLMEYKPDIIISVHPLMQH--IPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKE----VAKRASYFG 231 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~--~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~----~~~~l~~~g 231 (462)
+.+...++|-||........ ..+..+.. .++|+|.+..+... ....+.+.+-+.. ..+.+.+.|
T Consensus 63 ~~l~~~~vdgiii~~~~~~~~~~~~~~~~~----~~iPvV~~~~~~~~------~~~~~~V~~D~~~~g~~a~~~l~~~g 132 (304)
T 3gbv_A 63 QAVIEEQPDGVMFAPTVPQYTKGFTDALNE----LGIPYIYIDSQIKD------APPLAFFGQNSHQSGYFAARMLMLLA 132 (304)
T ss_dssp HHHHTTCCSEEEECCSSGGGTHHHHHHHHH----HTCCEEEESSCCTT------SCCSEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCEEEECCCChHHHHHHHHHHHH----CCCeEEEEeCCCCC------CCceEEEecChHHHHHHHHHHHHHHh
Confidence 34667899998877643321 11222222 38999886554321 0112333332222 223445556
Q ss_pred CCCCcEEEcC-----CCCChhhhc-ccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCce
Q 012492 232 LEVSQIRVFG-----LPIRPSFVR-AVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQ 305 (462)
Q Consensus 232 i~~~~i~v~g-----~pv~~~~~~-~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 305 (462)
....+|.+++ .+-...... ...-++. .++.+++. ....+..+........+.+..+++. +|+..
T Consensus 133 ~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~-l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~ 202 (304)
T 3gbv_A 133 VNDREIVIFRKIHEGVIGSNQQESREIGFRQY-MQEHHPAC--NILELNLHADLNIEDSRMLDDFFRE-------HPDVK 202 (304)
T ss_dssp TTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHH-HHHHCTTS--EEEEEEEESSCSSCHHHHHHHHHHH-------CTTCC
T ss_pred CCCCeEEEEEecccCCccchhHHHHHHHHHHH-HHhhCCCc--EEEEeeecCCCHHHHHHHHHHHHHh-------CCCeE
Confidence 5456787764 221111110 0000112 23345432 2233333333434444555544433 23444
Q ss_pred EEEEccCCH-HHHHHHhhccCCCCeEEeccch-hH-HHHHHhc
Q 012492 306 LIIICGRNR-TLASTLQSEEWKIPVKVRGFET-QM-EKWMGAC 345 (462)
Q Consensus 306 ~lvv~G~~~-~l~~~~~~~~~~~~V~~~g~~~-~~-~~l~~~a 345 (462)
.++...+.. ...+.+++.++ .+|.++|+-. .. .+++.-.
T Consensus 203 ai~~~~d~a~g~~~al~~~g~-~di~vig~d~~~~~~~~~~~~ 244 (304)
T 3gbv_A 203 HGITFNSKVYIIGEYLQQRRK-SDFSLIGYDLLERNVTCLKEG 244 (304)
T ss_dssp EEEESSSCTHHHHHHHHHTTC-CSCEEEEESCCHHHHHHHHHT
T ss_pred EEEEcCcchHHHHHHHHHcCC-CCcEEEEeCCCHHHHHHHHcC
Confidence 455444432 24566777777 7888988852 22 4555443
No 189
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=33.67 E-value=47 Score=31.25 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=30.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
.+++|+|+++--|-|-.+.+.+||.+|.+.|. .|.++|
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~---~vllid 51 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRR---SVLLLS 51 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSS---CEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCC---cEEEEE
Confidence 35789998887788999999999999998864 555554
No 190
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=33.65 E-value=50 Score=25.53 Aligned_cols=66 Identities=18% Similarity=0.072 Sum_probs=43.9
Q ss_pred HHHHhcchheecCChhh---------HHHHHHhCCCEEEecCCCCccccchHHHHHCCceeeeCCHHHHHHHHHHHh
Q 012492 340 KWMGACDCIITKAGPGT---------IAEALIRGLPIILNDYIPGQEKGNVPYVVDNGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 340 ~l~~~aD~vV~~sg~~t---------~~EAla~G~PvI~~~~~~~~~~~n~~~l~~~G~g~~~~~~~~la~~i~~ll 407 (462)
.-|+.||++|.-+|..| +-.|-..|+|+|.....+. +. ....+.+.+..++-=+.+.+.++|...+
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~-~~-~P~~l~~~a~~iV~Wn~~~I~~aI~~~~ 108 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGL-EN-VPPELEAVSSEVVGWNPHCIRDALEDAL 108 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSS-SC-CCTTHHHHCSEEECSCHHHHHHHHHHHH
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCC-Cc-CCHHHHhhCceeccCCHHHHHHHHHhcc
Confidence 56678888887666333 4457889999999886443 21 2334555555444446788888888776
No 191
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=33.51 E-value=46 Score=29.85 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
+||||+|++ . | .....|+++|.++|+ +|++.+
T Consensus 4 m~~~ilVtG-a-G----~iG~~l~~~L~~~g~---~V~~~~ 35 (286)
T 3ius_A 4 MTGTLLSFG-H-G----YTARVLSRALAPQGW---RIIGTS 35 (286)
T ss_dssp -CCEEEEET-C-C----HHHHHHHHHHGGGTC---EEEEEE
T ss_pred CcCcEEEEC-C-c----HHHHHHHHHHHHCCC---EEEEEE
Confidence 568998886 3 5 455678899988874 666553
No 192
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=33.50 E-value=45 Score=30.86 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
++|||+|++++. . .+|+++|++..+. +.++++|..
T Consensus 3 ~~~~Ili~g~g~----~---~~l~~~l~~~~~~-~~v~~~d~~ 37 (331)
T 2pn1_A 3 QKPHLLITSAGR----R---AKLVEYFVKEFKT-GRVSTADCS 37 (331)
T ss_dssp TCCEEEEESCTT----C---HHHHHHHHHHCCS-SEEEEEESC
T ss_pred ccceEEEecCCc----h---HHHHHHHHHhcCC-CEEEEEeCC
Confidence 457999974433 1 3688888877322 577777643
No 193
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=33.41 E-value=2.5e+02 Score=24.67 Aligned_cols=154 Identities=12% Similarity=0.004 Sum_probs=70.5
Q ss_pred HHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHH----HHHHHHHcCC
Q 012492 157 EAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKE----VAKRASYFGL 232 (462)
Q Consensus 157 ~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~----~~~~l~~~gi 232 (462)
.+.+...++|-||..........+..++. .++|+|.+..+... ....+.+..-+.. ..+.+.+.|.
T Consensus 62 ~~~~~~~~vdgiIi~~~~~~~~~~~~l~~----~~iPvV~~~~~~~~------~~~~~~V~~D~~~~g~~a~~~L~~~G~ 131 (292)
T 3k4h_A 62 VKMVQGRQIGGIILLYSRENDRIIQYLHE----QNFPFVLIGKPYDR------KDEITYVDNDNYTAAREVAEYLISLGH 131 (292)
T ss_dssp HHHHHTTCCCEEEESCCBTTCHHHHHHHH----TTCCEEEESCCSSC------TTTSCEEECCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCEEEEeCCCCChHHHHHHHH----CCCCEEEECCCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCC
Confidence 35577889999887654332221222333 38999876554321 0113334333322 2334455554
Q ss_pred CCCcEEEcCCCCChhhhcccCCh-H---HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEE
Q 012492 233 EVSQIRVFGLPIRPSFVRAVISK-D---NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLII 308 (462)
Q Consensus 233 ~~~~i~v~g~pv~~~~~~~~~~~-~---~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lv 308 (462)
.+|.+++.+....... .| . +..++.+++.....+ +. +........+.+..+ |.. .++...++
T Consensus 132 --~~i~~i~~~~~~~~~~---~R~~gf~~~l~~~g~~~~~~~~-~~-~~~~~~~~~~~~~~~---l~~----~~~~~ai~ 197 (292)
T 3k4h_A 132 --KQIAFIGGGSDLLVTR---DRLAGMSDALKLADIVLPKEYI-LH-FDFSRESGQQAVEEL---MGL----QQPPTAIM 197 (292)
T ss_dssp --CCEEEEESCTTBHHHH---HHHHHHHHHHHHTTCCCCGGGE-EE-CCSSHHHHHHHHHHH---HTS----SSCCSEEE
T ss_pred --ceEEEEeCcccchhHH---HHHHHHHHHHHHcCCCCChheE-Ee-cCCCHHHHHHHHHHH---HcC----CCCCcEEE
Confidence 4777765443221111 11 1 122345665332222 22 222222223333333 322 23334444
Q ss_pred EccCCH---HHHHHHhhccCC--CCeEEeccc
Q 012492 309 ICGRNR---TLASTLQSEEWK--IPVKVRGFE 335 (462)
Q Consensus 309 v~G~~~---~l~~~~~~~~~~--~~V~~~g~~ 335 (462)
|..+. ...+.+++.++. .+|.++|+-
T Consensus 198 -~~~d~~a~g~~~al~~~g~~vP~di~vig~d 228 (292)
T 3k4h_A 198 -ATDDLIGLGVLSALSKKGFVVPKDVSIVSFN 228 (292)
T ss_dssp -ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred -EcChHHHHHHHHHHHHhCCCCCCeEEEEEec
Confidence 33332 245566666654 788888885
No 194
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=32.17 E-value=33 Score=29.19 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCC-chH-HHHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 61 RTKNVLILMSDTG-GGH-RASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 61 ~~~kIli~~~~~G-~Gh-~~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
+||||+++.+|.- +|. ...+..+++.++ .+ .++.+.|+.
T Consensus 1 MM~kilii~gS~r~~s~t~~la~~~~~~~~-~~---~~v~~~dl~ 41 (192)
T 3fvw_A 1 MSKRILFIVGSFSEGSFNRQLAKKAETIIG-DR---AQVSYLSYD 41 (192)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHHHHT-TS---SEEEECCCS
T ss_pred CCCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CC---CEEEEEeCc
Confidence 4789999988751 233 233444555554 22 466767654
No 195
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=32.06 E-value=64 Score=28.26 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCc----hHH--HHHHHHHHHHhhhcCCceEEEEEec
Q 012492 61 RTKNVLILMSDTGG----GHR--ASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 61 ~~~kIli~~~~~G~----Gh~--~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.|||||++.++.-. |-. .-+.++++.+++.|+ +|.+.|+
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~---ev~~~dL 68 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGH---QVKITTV 68 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTC---CEEEEEG
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCC---EEEEEEC
Confidence 47899999876411 222 223356666666654 5555654
No 196
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=31.89 E-value=2.9e+02 Score=25.05 Aligned_cols=154 Identities=11% Similarity=0.046 Sum_probs=68.3
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCH-----HHHHHHHHcCC
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSK-----EVAKRASYFGL 232 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~-----~~~~~l~~~gi 232 (462)
+.+...++|-||.............++. .++|+|.+..... ...+ ++.... ...+.+.+.|.
T Consensus 112 ~~l~~~~vdGiIi~~~~~~~~~~~~l~~----~~iPvV~~~~~~~--------~~~~-~V~~D~~~~~~~a~~~L~~~G~ 178 (339)
T 3h5o_A 112 RAYLQHRPDGVLITGLSHAEPFERILSQ----HALPVVYMMDLAD--------DGRC-CVGFSQEDAGAAITRHLLSRGK 178 (339)
T ss_dssp HHHHTTCCSEEEEECSCCCTTHHHHHHH----TTCCEEEEESCCS--------SSCC-EEECCHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCEEEEeCCCCCHHHHHHHhc----CCCCEEEEeecCC--------CCCe-EEEECHHHHHHHHHHHHHHCCC
Confidence 4456789998776543322221223333 3899987643211 1122 333332 22234455554
Q ss_pred CCCcEEEcCCCCChhhhcccCChHHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccC
Q 012492 233 EVSQIRVFGLPIRPSFVRAVISKDNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGR 312 (462)
Q Consensus 233 ~~~~i~v~g~pv~~~~~~~~~~~~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~ 312 (462)
.+|-+++.+..........--.+..++.|++.....+ +..+........+.+..+++. +|+...++ |..
T Consensus 179 --~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~-------~~~~~ai~-~~n 247 (339)
T 3h5o_A 179 --RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEW-LDPQPSSMQMGADMLDRALAE-------RPDCDALF-CCN 247 (339)
T ss_dssp --CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEE-EECSCCCHHHHHHHHHHHHHH-------CTTCCEEE-ESS
T ss_pred --CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChhe-EecCCCCHHHHHHHHHHHHcC-------CCCCcEEE-ECC
Confidence 5787776543321110000001122345663222223 333333323333344433332 23333343 443
Q ss_pred CH---HHHHHHhhccC--CCCeEEeccc
Q 012492 313 NR---TLASTLQSEEW--KIPVKVRGFE 335 (462)
Q Consensus 313 ~~---~l~~~~~~~~~--~~~V~~~g~~ 335 (462)
+. ...+.+++.++ +++|.++||-
T Consensus 248 D~~A~g~~~al~~~G~~vP~disvvgfD 275 (339)
T 3h5o_A 248 DDLAIGALARSQQLGIAVPERLAIAGFN 275 (339)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred hHHHHHHHHHHHHcCCCCCCCEEEEEEC
Confidence 32 13455666654 4789999985
No 197
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=31.47 E-value=65 Score=29.06 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
++.|+|++..-|-|-.+.+.+||..|.+.|. .|.++|.
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~---rVLLID~ 119 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGY---KTLIVDG 119 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCC---eEEEEeC
Confidence 3345555555678999999999999998763 6666653
No 198
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=30.90 E-value=53 Score=30.65 Aligned_cols=37 Identities=5% Similarity=0.086 Sum_probs=30.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
.++|+|+++..|-|-.+.+.+||.+|.++|. .|.++|
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~---rVllvD 54 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRS---SVLLIS 54 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSS---CEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCC---eEEEEE
Confidence 4688888888888999999999999998874 556554
No 199
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=30.85 E-value=2.8e+02 Score=24.43 Aligned_cols=74 Identities=16% Similarity=-0.023 Sum_probs=37.3
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHH----HHHHHcCCC
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVA----KRASYFGLE 233 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~----~~l~~~gi~ 233 (462)
+.+...++|-||..........+..++. .++|+|.+..+.. ....+.+.+-+.... +.+.+.|.
T Consensus 60 ~~l~~~~vdgiIi~~~~~~~~~~~~l~~----~~iPvV~i~~~~~-------~~~~~~V~~D~~~~g~~a~~~L~~~G~- 127 (288)
T 3gv0_A 60 YILETGSADGVIISKIEPNDPRVRFMTE----RNMPFVTHGRSDM-------GIEHAFHDFDNEAYAYEAVERLAQCGR- 127 (288)
T ss_dssp HHHHHTCCSEEEEESCCTTCHHHHHHHH----TTCCEEEESCCCS-------SCCCEEEEECHHHHHHHHHHHHHHTTC-
T ss_pred HHHHcCCccEEEEecCCCCcHHHHHHhh----CCCCEEEECCcCC-------CCCCcEEEeCcHHHHHHHHHHHHHCCC-
Confidence 3466789998876543322221222332 3899987654321 112344444333332 34444553
Q ss_pred CCcEEEcCCCC
Q 012492 234 VSQIRVFGLPI 244 (462)
Q Consensus 234 ~~~i~v~g~pv 244 (462)
.+|.+++.+.
T Consensus 128 -~~I~~i~~~~ 137 (288)
T 3gv0_A 128 -KRIAVIVPPS 137 (288)
T ss_dssp -CEEEEECCCT
T ss_pred -CeEEEEcCCc
Confidence 5787775443
No 200
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=30.84 E-value=42 Score=28.00 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=17.5
Q ss_pred CCCCCeEEEEecCCCchHHH-HHHHHHHHH
Q 012492 59 AERTKNVLILMSDTGGGHRA-SAEAIRDAF 87 (462)
Q Consensus 59 ~~~~~kIli~~~~~G~Gh~~-~a~aLa~~L 87 (462)
+..+|||+|+..|. .|+.. .|..|++.+
T Consensus 10 ~~~~mkilIvY~S~-tGnT~~vA~~Ia~~l 38 (171)
T 4ici_A 10 KHSNSKILVAYFSA-TGTTARAAEKLGAAV 38 (171)
T ss_dssp ---CCCEEEEECCS-SSHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEECC-CChHHHHHHHHHHHh
Confidence 34578999999875 35544 455666666
No 201
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=30.84 E-value=47 Score=29.58 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+.|.| ++.-|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G---~~VlliD~ 37 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMG---KTIMVVGC 37 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTT---CCEEEEEE
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCC---CcEEEEcC
Confidence 345666 55566799999999999999886 36677764
No 202
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=30.72 E-value=57 Score=29.49 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=20.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
|||||+ +++| .....|++.|.++|| +|++.
T Consensus 1 MkILVT-GatG----fIG~~L~~~L~~~G~---~V~~l 30 (298)
T 4b4o_A 1 MRVLVG-GGTG----FIGTALTQLLNARGH---EVTLV 30 (298)
T ss_dssp CEEEEE-TTTS----HHHHHHHHHHHHTTC---EEEEE
T ss_pred CEEEEE-CCCC----HHHHHHHHHHHHCCC---EEEEE
Confidence 788765 4443 444568899999885 55554
No 203
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=30.71 E-value=72 Score=26.71 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=19.7
Q ss_pred CCCCCCeEEEEecC-CCchHHHHHHHHHHHHhh
Q 012492 58 GAERTKNVLILMSD-TGGGHRASAEAIRDAFKI 89 (462)
Q Consensus 58 ~~~~~~kIli~~~~-~G~Gh~~~a~aLa~~L~~ 89 (462)
+...||||||+|.+ + -=-..|.+|.+.+.+
T Consensus 14 ~~~~M~kVLFVCtGNi--CRSpmAE~i~r~~~~ 44 (173)
T 4etm_A 14 GRGSMISVLFVCLGNI--CRSPMAEAIFRDLAA 44 (173)
T ss_dssp CCSSCEEEEEEESSSS--SHHHHHHHHHHHHHH
T ss_pred CCCCccEEEEEeCCcc--hhhHHHHHHHHHHHH
Confidence 45568899999844 4 333446677776654
No 204
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=30.68 E-value=69 Score=27.38 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=19.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHh-hhcCCceEEEEEe
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFK-IEFGDEYRIFVKD 101 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~-~~g~~~~~v~v~d 101 (462)
+|||..++++++| ....++++.|. +.|+ .|++.+
T Consensus 3 ~mmk~vlVtGasg----~iG~~~~~~l~~~~g~---~V~~~~ 37 (221)
T 3r6d_A 3 AMYXYITILGAAG----QIAQXLTATLLTYTDM---HITLYG 37 (221)
T ss_dssp CSCSEEEEESTTS----HHHHHHHHHHHHHCCC---EEEEEE
T ss_pred ceEEEEEEEeCCc----HHHHHHHHHHHhcCCc---eEEEEe
Confidence 4567444445443 33457888888 6663 666553
No 205
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=30.51 E-value=88 Score=27.70 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=14.6
Q ss_pred CcHHHHHHHHHHHHHhccC
Q 012492 427 PEAVVDIVKDIHDLAAQRG 445 (462)
Q Consensus 427 ~~~~~~ia~~i~~l~~~~~ 445 (462)
-...+++++.+.-+++..+
T Consensus 214 ~~~~~dva~~v~~L~s~~~ 232 (258)
T 3oid_A 214 MVEIKDMVDTVEFLVSSKA 232 (258)
T ss_dssp CBCHHHHHHHHHHHTSSTT
T ss_pred CcCHHHHHHHHHHHhCccc
Confidence 3467899999998887653
No 206
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=30.26 E-value=84 Score=28.37 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCeEEEEecCC-CchHH-HHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 62 TKNVLILMSDT-GGGHR-ASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 62 ~~kIli~~~~~-G~Gh~-~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
|||||++.++. +.|+. ..+.++++.|++.| .+|.+.|+.+
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g---~eV~~~dL~~ 43 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKG---WEVVESDLYA 43 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT---CEEEEEETTT
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCC---CeEEEEEccc
Confidence 68999998774 22333 23445666676655 3677777643
No 207
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=30.09 E-value=3.1e+02 Score=24.81 Aligned_cols=152 Identities=11% Similarity=0.069 Sum_probs=69.1
Q ss_pred HHHHhhCCCEEEECCcccchHH-HHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHH----HHHHHHHcCC
Q 012492 158 AGLMEYKPDIIISVHPLMQHIP-LWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKE----VAKRASYFGL 232 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~-~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~----~~~~l~~~gi 232 (462)
+.+...++|-||.......... ...++. .++|+|.+..+... ...+.+.+-+.. ..+.+.+.|.
T Consensus 113 ~~l~~~~vdgiIi~~~~~~~~~~~~~~~~----~~iPvV~~~~~~~~-------~~~~~V~~D~~~~~~~a~~~L~~~G~ 181 (338)
T 3dbi_A 113 QYLLDLRCDAIMIYPRFLSVDEIDDIIDA----HSQPIMVLNRRLRK-------NSSHSVWCDHKQTSFNAVAELINAGH 181 (338)
T ss_dssp HHHHHTTCSEEEECCSSSCHHHHHHHHHH----CSSCEEEESSCCSS-------SGGGEECBCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCEEEEeCCCCChHHHHHHHHc----CCCCEEEEcCCCCC-------CCCCEEEEChHHHHHHHHHHHHHCCC
Confidence 4466779998887654332221 122232 37999876544321 112333332222 2234445553
Q ss_pred CCCcEEEcCCCCChhhhcccCCh-H---HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEE
Q 012492 233 EVSQIRVFGLPIRPSFVRAVISK-D---NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLII 308 (462)
Q Consensus 233 ~~~~i~v~g~pv~~~~~~~~~~~-~---~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lv 308 (462)
.+|.+++.+....... .| + +..++.|++.+... +..+........+.+..+++. .++...++
T Consensus 182 --~~I~~i~~~~~~~~~~---~R~~Gf~~al~~~g~~~~~~~--~~~~~~~~~~~~~~~~~ll~~-------~~~~~ai~ 247 (338)
T 3dbi_A 182 --QEIAFLTGSMDSPTSI---ERLAGYKDALAQHGIALNEKL--IANGKWTPASGAEGVEMLLER-------GAKFSALV 247 (338)
T ss_dssp --CSEEEECCCTTCHHHH---HHHHHHHHHHHHTTCCCCGGG--EECCCSSHHHHHHHHHHHHHT-------TCCCSEEE
T ss_pred --CEEEEEeCCCCCccHH---HHHHHHHHHHHHCCCCCCcce--EEeCCCCHHHHHHHHHHHHcC-------CCCCeEEE
Confidence 5787775443221111 11 1 12234566543322 222333322233334333322 23333343
Q ss_pred EccCCH---HHHHHHhhccCC--CCeEEeccc
Q 012492 309 ICGRNR---TLASTLQSEEWK--IPVKVRGFE 335 (462)
Q Consensus 309 v~G~~~---~l~~~~~~~~~~--~~V~~~g~~ 335 (462)
|..+. ...+.+++.++. ++|.++||-
T Consensus 248 -~~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 248 -ASNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp -ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred -ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 44332 234566666654 788888885
No 208
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=30.07 E-value=55 Score=28.12 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=28.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
+.|+|.....|.|-.+.+.+||.+|.++|. .|.+.|
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~---rVll~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGY---RTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTC---CEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEc
Confidence 356777777888999999999999999874 455555
No 209
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=30.05 E-value=3.1e+02 Score=24.73 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+.++|.|+-+|.| | +.+.+++.+.-|+...+++.|.
T Consensus 20 ~~~~IgvfDSGvG-G-----ltv~~~i~~~lP~~~~iy~~D~ 55 (285)
T 2jfn_A 20 PRPTVLVFDSGVG-G-----LSVYDEIRHLLPDLHYIYAFDN 55 (285)
T ss_dssp CEEEEEEEESSST-H-----HHHHHHHHHHSTTSEEEEEECT
T ss_pred CCCcEEEEeCCcc-H-----HHHHHHHHHhCCCCCeEEeecc
Confidence 4467999998885 4 3344666666565556777764
No 210
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=29.78 E-value=43 Score=25.70 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=36.6
Q ss_pred CceEEEEccCCHH-------HHHHHhhccCCCCeEEecc-chhHHHHHHhcchheecCC---hhhHHHHHH--hCCCEEE
Q 012492 303 IGQLIIICGRNRT-------LASTLQSEEWKIPVKVRGF-ETQMEKWMGACDCIITKAG---PGTIAEALI--RGLPIIL 369 (462)
Q Consensus 303 ~~~~lvv~G~~~~-------l~~~~~~~~~~~~V~~~g~-~~~~~~l~~~aD~vV~~sg---~~t~~EAla--~G~PvI~ 369 (462)
..+++++|+.+-. .++..++.++ .+.+... ..+..+.+...|+++..+- -..-++..+ .|+|+.+
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi--~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~v 83 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEV--RVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVA 83 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTC--SEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC--ceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEE
Confidence 3467777776642 2233333344 3444221 2345566778899887543 111233333 4899999
Q ss_pred ecC
Q 012492 370 NDY 372 (462)
Q Consensus 370 ~~~ 372 (462)
+|.
T Consensus 84 I~~ 86 (108)
T 3nbm_A 84 TRG 86 (108)
T ss_dssp CCH
T ss_pred eCH
Confidence 873
No 211
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=29.73 E-value=53 Score=29.73 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=28.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+.|.| ++--|-|-.+.+.+||.+|.++| ..|.++|.
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G---~rVlliD~ 38 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMG---KKVMIVGC 38 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCC---CeEEEEec
Confidence 445666 55667899999999999999886 36677764
No 212
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=29.72 E-value=53 Score=28.02 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=24.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
.+|||+|+.++..|.....|..|++.|.+.|.
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~ 51 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGF 51 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTC
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCC
Confidence 35789999877534667788899999987764
No 213
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=29.67 E-value=46 Score=30.23 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=27.9
Q ss_pred CCeEE-EEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVL-ILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIl-i~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|+||+ |..+..|.|-.+.+.+||.+|.++| ..|.++|.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G---~~VlliD~ 41 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGG---AKVAVIDL 41 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCC---CcEEEEEC
Confidence 45554 4445567899999999999999886 36677764
No 214
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=29.53 E-value=63 Score=30.68 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=29.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+++.|+|+++.-|-|-.+.|.+||.+|.++|. .|.++|.
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~---rVlliD~ 180 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGK---KVFYLNI 180 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTC---CEEEEEC
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCC---CEEEEEC
Confidence 34456666666678999999999999999863 6666663
No 215
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=29.44 E-value=90 Score=29.41 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=39.7
Q ss_pred CCCceEEEEccCCHH-HHHHHhhccCCCCeEEeccchhHHHHHHh--cchhe-ecCC---hhhHHHHHHhCCCEEEecC
Q 012492 301 RPIGQLIIICGRNRT-LASTLQSEEWKIPVKVRGFETQMEKWMGA--CDCII-TKAG---PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 301 ~~~~~~lvv~G~~~~-l~~~~~~~~~~~~V~~~g~~~~~~~l~~~--aD~vV-~~sg---~~t~~EAla~G~PvI~~~~ 372 (462)
.++++++-+|..+.+ ..+..++++.. . ..+++.++++. .|+|+ +.+- ...+.+|+..|++|++=.+
T Consensus 54 ~~~~~lvav~d~~~~~a~~~a~~~g~~---~---~y~d~~ell~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKP 126 (393)
T 4fb5_A 54 VERPRLVHLAEANAGLAEARAGEFGFE---K---ATADWRALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKP 126 (393)
T ss_dssp SCCCEEEEEECC--TTHHHHHHHHTCS---E---EESCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCCcEEEEEECCCHHHHHHHHHHhCCC---e---ecCCHHHHhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEccC
Confidence 356788888887764 33333444332 1 12567788875 46543 4332 5567899999999998544
No 216
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=29.40 E-value=2.9e+02 Score=24.24 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=67.6
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHHH----HHHHHcCCC
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEVA----KRASYFGLE 233 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~~----~~l~~~gi~ 233 (462)
+.+...++|-||......... .+.+.. ..++|+|.+..+.. ....+.+...+.... +.+.+.|
T Consensus 58 ~~l~~~~vdgiIi~~~~~~~~--~~~~~~--~~~iPvV~~~~~~~-------~~~~~~V~~D~~~~g~~a~~~L~~~G-- 124 (291)
T 3egc_A 58 GQFFERRVDGLILAPSEGEHD--YLRTEL--PKTFPIVAVNRELR-------IPGCGAVLSENVRGARTAVEYLIARG-- 124 (291)
T ss_dssp HHHHHTTCSEEEECCCSSCCH--HHHHSS--CTTSCEEEESSCCC-------CTTCEEEEECHHHHHHHHHHHHHHTT--
T ss_pred HHHHHCCCCEEEEeCCCCChH--HHHHhh--ccCCCEEEEecccC-------CCCCCEEEECcHHHHHHHHHHHHHcC--
Confidence 345678999888766443222 122221 14899987654432 122344444333333 3344455
Q ss_pred CCcEEEcCCCCChhhhcccCCh-H---HHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEE
Q 012492 234 VSQIRVFGLPIRPSFVRAVISK-D---NLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIII 309 (462)
Q Consensus 234 ~~~i~v~g~pv~~~~~~~~~~~-~---~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv 309 (462)
..+|.+++.+....... .| + +..++.+++.+...+ +. +........+.+..+++. .++...++
T Consensus 125 ~~~i~~i~~~~~~~~~~---~R~~gf~~~l~~~g~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~-------~~~~~ai~- 191 (291)
T 3egc_A 125 HTRIGAIVGSAGLMTSR---ERLKGFRAAMSAAGLPVRQEWI-AA-GGVRADNGRDGAIKVLTG-------ADRPTALL- 191 (291)
T ss_dssp CCSEEEECSCTTSHHHH---HHHHHHHHHHHHTTCCCCGGGE-EC-------CCHHHHHHHHTC--------CCCSEEE-
T ss_pred CCEEEEEeCCCCCcCHH---HHHHHHHHHHHHcCCCCCHHHe-Ee-CCCChhHHHHHHHHHHhC-------CCCCcEEE-
Confidence 35787765443221111 11 1 122345665333222 22 222222233334333321 23334444
Q ss_pred ccCCH---HHHHHHhhccCC--CCeEEeccc
Q 012492 310 CGRNR---TLASTLQSEEWK--IPVKVRGFE 335 (462)
Q Consensus 310 ~G~~~---~l~~~~~~~~~~--~~V~~~g~~ 335 (462)
|..+. ...+.+++.++. .+|.++|+-
T Consensus 192 ~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 192 TSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp ESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred ECCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 43332 234556666544 788888885
No 217
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=29.13 E-value=89 Score=29.08 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=13.9
Q ss_pred HHHHHhhCCCEEEECCc
Q 012492 157 EAGLMEYKPDIIISVHP 173 (462)
Q Consensus 157 ~~~l~~~kPDvVi~~~~ 173 (462)
.+.+++++||+|++.+.
T Consensus 75 ~~~l~~~~~Dliv~~~y 91 (317)
T 3rfo_A 75 YEKVLALEPDLIVTAAF 91 (317)
T ss_dssp HHHHHHHCCSEEEESSC
T ss_pred HHHHHhcCCCEEEEcCc
Confidence 45688999999998864
No 218
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=28.97 E-value=3.4e+02 Score=24.84 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=67.9
Q ss_pred HHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHH----HHHHHHHcCCC
Q 012492 158 AGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKE----VAKRASYFGLE 233 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~----~~~~l~~~gi~ 233 (462)
+.+...++|-||..........+..++. .++|+|.+..... ....+.+..-+.. ..+.+.+.|.
T Consensus 120 ~~l~~~~vdGiI~~~~~~~~~~~~~l~~----~~iPvV~i~~~~~-------~~~~~~V~~D~~~~~~~a~~~L~~~G~- 187 (355)
T 3e3m_A 120 ETMLRRRPEAMVLSYDGHTEQTIRLLQR----ASIPIVEIWEKPA-------HPIGHTVGFSNERAAYDMTNALLARGF- 187 (355)
T ss_dssp HHHHHTCCSEEEEECSCCCHHHHHHHHH----CCSCEEEESSCCS-------SCSSEEEECCHHHHHHHHHHHHHHTTC-
T ss_pred HHHHhCCCCEEEEeCCCCCHHHHHHHHh----CCCCEEEECCccC-------CCCCCEEEeChHHHHHHHHHHHHHCCC-
Confidence 4456789998876553322221222333 4899987632111 1112222222222 2234455554
Q ss_pred CCcEEEcCCCCChhhhcccCCh----HHHHHHcCCCCCCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEE
Q 012492 234 VSQIRVFGLPIRPSFVRAVISK----DNLRLELQMDPILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIII 309 (462)
Q Consensus 234 ~~~i~v~g~pv~~~~~~~~~~~----~~~r~~l~l~~~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv 309 (462)
.+|.+++.+....... ..| .+..++.|++.+. .+.+..+........+.+..+++. .++...++
T Consensus 188 -r~I~~i~~~~~~~~~~--~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~-------~~~~~ai~- 255 (355)
T 3e3m_A 188 -RKIVFLGEKDDDWTRG--AARRAGFKRAMREAGLNPDQ-EIRLGAPPLSIEDGVAAAELILQE-------YPDTDCIF- 255 (355)
T ss_dssp -CSEEEEEESSCTTSHH--HHHHHHHHHHHHHTTSCSCC-EEEESCSSCCHHHHHHHHHHHHHH-------CTTCCEEE-
T ss_pred -CeEEEEccCcccChhH--HHHHHHHHHHHHHCCcCCCc-cEEEecCCCCHHHHHHHHHHHHcC-------CCCCcEEE-
Confidence 4777765443221100 011 1223445775432 233333333322233334333332 22333343
Q ss_pred ccCCH---HHHHHHhhccC--CCCeEEeccc
Q 012492 310 CGRNR---TLASTLQSEEW--KIPVKVRGFE 335 (462)
Q Consensus 310 ~G~~~---~l~~~~~~~~~--~~~V~~~g~~ 335 (462)
|..+. ...+.+++.++ ++.|.++||-
T Consensus 256 ~~nD~~A~g~~~al~~~G~~vP~disvigfD 286 (355)
T 3e3m_A 256 CVSDMPAFGLLSRLKSIGVAVPEQVSVVGFG 286 (355)
T ss_dssp ESSHHHHHHHHHHHHHHTCCTTTTCEEECSS
T ss_pred ECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 44332 23455555554 4789999985
No 219
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=28.79 E-value=3.1e+02 Score=24.34 Aligned_cols=74 Identities=15% Similarity=0.039 Sum_probs=38.5
Q ss_pred HHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcCHHH----HHHHHHcCC
Q 012492 157 EAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPSKEV----AKRASYFGL 232 (462)
Q Consensus 157 ~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s~~~----~~~l~~~gi 232 (462)
.+.+...++|-||..........+..++. .++|+|.+..+.. ....+.+..-+... .+.+.+.|.
T Consensus 76 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~----~~iPvV~i~~~~~-------~~~~~~V~~D~~~~g~~a~~~L~~~G~ 144 (305)
T 3huu_A 76 KTMIQSKSVDGFILLYSLKDDPIEHLLNE----FKVPYLIVGKSLN-------YENIIHIDNDNIDAAYQLTQYLYHLGH 144 (305)
T ss_dssp HHHHHTTCCSEEEESSCBTTCHHHHHHHH----TTCCEEEESCCCS-------STTCCEEECCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCEEEEeCCcCCcHHHHHHHH----cCCCEEEECCCCc-------ccCCcEEEeCHHHHHHHHHHHHHHCCC
Confidence 35577889998887654332222223333 3899987654431 11234443333322 234445554
Q ss_pred CCCcEEEcCCC
Q 012492 233 EVSQIRVFGLP 243 (462)
Q Consensus 233 ~~~~i~v~g~p 243 (462)
.+|.+++.+
T Consensus 145 --~~I~~i~~~ 153 (305)
T 3huu_A 145 --RHILFLQES 153 (305)
T ss_dssp --CSEEEEEES
T ss_pred --CeEEEEcCC
Confidence 577766543
No 220
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.69 E-value=71 Score=24.07 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=22.8
Q ss_pred HHHHhhCCCEEEECCccc--chHHH-HHHHHcCCCCCCeEEEEec
Q 012492 158 AGLMEYKPDIIISVHPLM--QHIPL-WVLKWQGLQKKVIFVTVIT 199 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~--~~~~~-~~~~~~~~~~~iP~v~~~~ 199 (462)
+.+++.+||+|+.+.... .+..+ ...+.......+|+|.+..
T Consensus 41 ~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 41 HAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEEC
Confidence 346678899999887432 23211 1223221125788876543
No 221
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=28.69 E-value=93 Score=24.02 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=22.3
Q ss_pred CCCeEEE-EecCCCchHHHHH-HHHHHHHhhhcC
Q 012492 61 RTKNVLI-LMSDTGGGHRASA-EAIRDAFKIEFG 92 (462)
Q Consensus 61 ~~~kIli-~~~~~G~Gh~~~a-~aLa~~L~~~g~ 92 (462)
+||||+. +.|++|--|...| .+|-++-++.|+
T Consensus 4 m~mkIvaVTaCptGiAHTyMAAeaL~~aA~~~G~ 37 (111)
T 2kyr_A 4 MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGY 37 (111)
T ss_dssp CCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTSS
T ss_pred ccccEEEEEcCCCcHHHHHHHHHHHHHHHHHCCC
Confidence 5678775 4588987777764 467777777764
No 222
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=28.62 E-value=44 Score=28.35 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=18.6
Q ss_pred CCCCeEEEEecCCCchHH-HHHHHHHHHHhh
Q 012492 60 ERTKNVLILMSDTGGGHR-ASAEAIRDAFKI 89 (462)
Q Consensus 60 ~~~~kIli~~~~~G~Gh~-~~a~aLa~~L~~ 89 (462)
+.||||+++.+|. .|+. ..|.++++.+.+
T Consensus 4 ~~~~kiliiy~S~-~GnT~~lA~~ia~~l~~ 33 (193)
T 3d7n_A 4 NSSSNTVVVYHSG-YGHTHRMAEAVAEGAEA 33 (193)
T ss_dssp --CCCEEEEECCS-SSHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEECC-ChHHHHHHHHHHHHhhh
Confidence 4578999999886 3554 445566666654
No 223
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=28.38 E-value=77 Score=24.08 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=20.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
|||++.| +.|.|+...+..|.+++.+.|-
T Consensus 5 mkIlvvC-~~G~~TSll~~kl~~~~~~~gi 33 (109)
T 2l2q_A 5 MNILLVC-GAGMSTSMLVQRIEKYAKSKNI 33 (109)
T ss_dssp EEEEEES-SSSCSSCHHHHHHHHHHHHHTC
T ss_pred eEEEEEC-CChHhHHHHHHHHHHHHHHCCC
Confidence 6875555 4445666777789999988864
No 224
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=28.29 E-value=49 Score=29.51 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=23.9
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
..||+||...+.....++.-+.. .+||+|.++
T Consensus 113 ~~PdlliV~Dp~~e~~ai~EA~~----l~IPvIalv 144 (241)
T 2xzm_B 113 EEPRVLIVTDPRSDFQAIKEASY----VNIPVIALC 144 (241)
T ss_dssp CCCSEEEESCTTTTHHHHHHHTT----TTCCEEECC
T ss_pred CCCCEEEEECCCcchHHHHHHHH----hCCCEEEEe
Confidence 36999999998877765555543 599999754
No 225
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=28.08 E-value=64 Score=24.45 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=22.8
Q ss_pred CCeEEEEecC--CCchHHHHHHHHHHHHhhh-cC
Q 012492 62 TKNVLILMSD--TGGGHRASAEAIRDAFKIE-FG 92 (462)
Q Consensus 62 ~~kIli~~~~--~G~Gh~~~a~aLa~~L~~~-g~ 92 (462)
|||++|+..+ .|.-....+..+|.++.+. |+
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~ 34 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESN 34 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTT
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 5688887644 3556677788899999888 75
No 226
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=28.05 E-value=2.9e+02 Score=23.81 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=22.3
Q ss_pred HHHHhhCCCEEEECCcc-cchHHHHHHHHcCCCCCCeEEEEecC
Q 012492 158 AGLMEYKPDIIISVHPL-MQHIPLWVLKWQGLQKKVIFVTVITD 200 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~-~~~~~~~~~~~~~~~~~iP~v~~~~d 200 (462)
+.+...++|-||..... .....+..++. .++|+|.+..+
T Consensus 52 ~~l~~~~vdgiIi~~~~~~~~~~~~~~~~----~~iPvV~~~~~ 91 (272)
T 3o74_A 52 QLFRARRCDALFVASCLPPEDDSYRELQD----KGLPVIAIDRR 91 (272)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHcCCCEEEEecCccccHHHHHHHHH----cCCCEEEEccC
Confidence 34567799988876543 11211223333 38999876544
No 227
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=27.96 E-value=39 Score=27.42 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=17.8
Q ss_pred CCCeEEEEecCCCchHHHH-HHHHHHHHh
Q 012492 61 RTKNVLILMSDTGGGHRAS-AEAIRDAFK 88 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~-a~aLa~~L~ 88 (462)
+||||+|+..|. .||... |..|++.+.
T Consensus 2 M~~kilIvY~S~-tGnT~~iA~~Ia~~l~ 29 (151)
T 3edo_A 2 MAKKTLILYYSW-SGETKKMAEKINSEIK 29 (151)
T ss_dssp CCCCEEEEECCS-SSHHHHHHHHHHHHST
T ss_pred CCCcEEEEEECC-CCcHHHHHHHHHHhcc
Confidence 567999999886 466554 444555553
No 228
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=27.92 E-value=81 Score=28.91 Aligned_cols=38 Identities=8% Similarity=0.139 Sum_probs=28.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
++.|+|++...|-|-.+.+.+||..|.+.|. .|.++|.
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~---rVLLID~ 141 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQ---KVLFIDA 141 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCC---cEEEEEC
Confidence 3445565555678999999999999998863 5666653
No 229
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=27.36 E-value=98 Score=28.23 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=25.5
Q ss_pred CCCeEEEEecC--CCchHHHHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 61 RTKNVLILMSD--TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 61 ~~~kIli~~~~--~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
++|||||+.+. .++=-...+.+.++.|++.|+ +|.+.|+..
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~---eV~v~DLy~ 63 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGH---EVQVSDLYA 63 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTC---EEEEEETTT
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCC---eEEEEEccc
Confidence 45899999754 321112334467788888874 778888754
No 230
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=27.35 E-value=42 Score=27.37 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHH
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAF 87 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L 87 (462)
||++.++++..|.|-.+.+..|++.|
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45666777778889999888888876
No 231
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=27.31 E-value=50 Score=26.99 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHH
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAF 87 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L 87 (462)
||||+|+..|.-|.....|..|++.|
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l 26 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI 26 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc
Confidence 57999998775334555566777766
No 232
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=27.31 E-value=48 Score=28.50 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=30.4
Q ss_pred HHHHhcchhe-ecCChhh-------------HHHHHHhCCCEEEecCCCC------ccccchHHHHHCCceee
Q 012492 340 KWMGACDCII-TKAGPGT-------------IAEALIRGLPIILNDYIPG------QEKGNVPYVVDNGAGVF 392 (462)
Q Consensus 340 ~l~~~aD~vV-~~sg~~t-------------~~EAla~G~PvI~~~~~~~------~~~~n~~~l~~~G~g~~ 392 (462)
++...+|++| .|...+| ..=+++.++|+|+.|.-+. --..|...|.+.|+-++
T Consensus 77 ~l~~~aD~~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~iv 149 (194)
T 1p3y_1 77 EIGRWADIYCIIPATANILGQTANGVAMNLVATTVLAHPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVI 149 (194)
T ss_dssp HHHHHCSEEEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEEC
T ss_pred cccccCCEEEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEEEECCChhhcCCHHHHHHHHHHHHCCCEEE
Confidence 4557899855 4432221 2224668999999997321 11236777777665433
No 233
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=26.86 E-value=1.1e+02 Score=26.36 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH-HHHHHhhccCCCCeEEe--ccc--hhHHHHHHh
Q 012492 270 AVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT-LASTLQSEEWKIPVKVR--GFE--TQMEKWMGA 344 (462)
Q Consensus 270 ~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~-l~~~~~~~~~~~~V~~~--g~~--~~~~~l~~~ 344 (462)
++||+||+.|-+ ..++..++ + .+.+ +++++++.+ +.+..++++ .++.+. ... +++.+++..
T Consensus 3 ~vlVTGas~gIG--~~~a~~l~----~-----~G~~-V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~ 68 (230)
T 3guy_A 3 LIVITGASSGLG--AELAKLYD----A-----EGKA-TYLTGRSESKLSTVTNCLS--NNVGYRARDLASHQEVEQLFEQ 68 (230)
T ss_dssp CEEEESTTSHHH--HHHHHHHH----H-----TTCC-EEEEESCHHHHHHHHHTCS--SCCCEEECCTTCHHHHHHHHHS
T ss_pred EEEEecCCchHH--HHHHHHHH----H-----CCCE-EEEEeCCHHHHHHHHHHHh--hccCeEeecCCCHHHHHHHHHH
Confidence 578898875532 23333333 2 1345 445566653 444344332 233332 222 456667766
Q ss_pred c----chheecCC
Q 012492 345 C----DCIITKAG 353 (462)
Q Consensus 345 a----D~vV~~sg 353 (462)
+ |++|..+|
T Consensus 69 ~~~~~d~lv~~Ag 81 (230)
T 3guy_A 69 LDSIPSTVVHSAG 81 (230)
T ss_dssp CSSCCSEEEECCC
T ss_pred HhhcCCEEEEeCC
Confidence 5 78876654
No 234
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=26.43 E-value=1.7e+02 Score=23.02 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHHHhhCCCEEEECC--cccchHHHH-HHHHcCCCCCCeEEEE
Q 012492 158 AGLMEYKPDIIISVH--PLMQHIPLW-VLKWQGLQKKVIFVTV 197 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~--~~~~~~~~~-~~~~~~~~~~iP~v~~ 197 (462)
+.+++.+||+|+++. |-..+.-+. ..|.......+|+|.+
T Consensus 51 ~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~l 93 (134)
T 3to5_A 51 PMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMI 93 (134)
T ss_dssp HHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEE
Confidence 346778999999988 444454221 1232222247887754
No 235
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=26.31 E-value=2.9e+02 Score=23.26 Aligned_cols=77 Identities=19% Similarity=0.150 Sum_probs=40.4
Q ss_pred cchheecCC---hhhHHHHHHhCCCEEEecCCCCcccc--chHHHHHC--Cceee-e--CCH---HHHHHHHHHHhcCCH
Q 012492 345 CDCIITKAG---PGTIAEALIRGLPIILNDYIPGQEKG--NVPYVVDN--GAGVF-T--RSP---KETARIVTEWFSTKT 411 (462)
Q Consensus 345 aD~vV~~sg---~~t~~EAla~G~PvI~~~~~~~~~~~--n~~~l~~~--G~g~~-~--~~~---~~la~~i~~ll~~d~ 411 (462)
++++|.-+| ...-+=|...-+|||..|...+.-.+ ....+++. |..+. + +.. ..++..|.. + .|+
T Consensus 69 ~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~Id~~~nAa~lAaqIla-~-~d~ 146 (183)
T 1o4v_A 69 IEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILG-I-KYP 146 (183)
T ss_dssp CCEEEEEEESSCCHHHHHHHHCSSCEEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHH-T-TCH
T ss_pred CcEEEEecCcccccHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCchHHHHHHHHHHh-c-CCH
Confidence 567776554 33334456688999999985421111 11234454 54322 2 232 233333433 2 688
Q ss_pred HHHHHHHHHHHh
Q 012492 412 DELKRMSENALK 423 (462)
Q Consensus 412 ~~~~~m~~~a~~ 423 (462)
++++++.+.-.+
T Consensus 147 ~l~~kL~~~r~~ 158 (183)
T 1o4v_A 147 EIARKVKEYKER 158 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887765433
No 236
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=26.09 E-value=62 Score=30.20 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=27.9
Q ss_pred CCeEEEEecCCCchHHH---HHHHHHHHHhhhcCCceEEEEEecc
Q 012492 62 TKNVLILMSDTGGGHRA---SAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~---~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
+|||+++.++...=|.. .+.+++++|++.| ++++.++..
T Consensus 3 ~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~~g---~~v~~i~~~ 44 (343)
T 1e4e_A 3 RIKVAILFGGCSEEHDVSVKSAIEIAANINKEK---YEPLYIGIT 44 (343)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTT---EEEEEEEEC
T ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHhhhcC---CEEEEEEEc
Confidence 57999999876433444 5778999999886 566766543
No 237
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=26.08 E-value=3.2e+02 Score=26.64 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=25.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcC
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFG 92 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~ 92 (462)
.+|.++++..|.|-.+.+..||.+|+++|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~ 129 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGY 129 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCC
Confidence 366666767889999999999999998864
No 238
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.94 E-value=82 Score=28.98 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=32.1
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecCCCCCCcccccCCCcEEEEcC
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHPTWFHPRVNRCYCPS 220 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d~~~~~~~~~~~~~d~~i~~s 220 (462)
..||+||++.+.....++.-+.. .+||+|.++ |.+ +.+ ..+|..|-.+
T Consensus 121 ~ePdllvV~Dp~~d~qAI~EA~~----lnIPtIALv-DTn-sdp----~~VDy~IP~N 168 (305)
T 3iz6_A 121 SEPRLLILTDPRTDHQPIKESAL----GNIPTIAFC-DTD-SPM----RYVDIGIPAN 168 (305)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHH----HTCCEEEEE-CTT-SCG----GGCSEEEESC
T ss_pred cCCceeEEeCcccchHHHHHHHH----cCCCEEEEE-cCC-CCc----cccceEEeCC
Confidence 57999999999887776666655 389999765 222 111 2467666443
No 239
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=25.75 E-value=89 Score=26.05 Aligned_cols=30 Identities=20% Similarity=0.027 Sum_probs=25.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhc
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g 91 (462)
+|+++.+++..|.|-.+.+..|+.+|..+|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 467777777778999999999999999876
No 240
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=25.57 E-value=96 Score=23.01 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
++|+|+|++. | .....+++.|.+.| .+++++.+
T Consensus 4 ~~~~v~I~G~--G----~iG~~~~~~l~~~g--~~~v~~~~ 36 (118)
T 3ic5_A 4 MRWNICVVGA--G----KIGQMIAALLKTSS--NYSVTVAD 36 (118)
T ss_dssp TCEEEEEECC--S----HHHHHHHHHHHHCS--SEEEEEEE
T ss_pred CcCeEEEECC--C----HHHHHHHHHHHhCC--CceEEEEe
Confidence 4578888854 3 33456788888875 24666665
No 241
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=25.41 E-value=66 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHH
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAF 87 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L 87 (462)
+|+++.++++..|.|-.+.+..|++.|
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356777788888899999888888776
No 242
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=25.38 E-value=4e+02 Score=25.10 Aligned_cols=66 Identities=8% Similarity=-0.038 Sum_probs=38.9
Q ss_pred CCceEEE-EccCCHH-HHHHHhhccCCCCeEEeccchhHHHHHHh-------cchhe-ecCC---hhhHHHHHHhCCCEE
Q 012492 302 PIGQLII-ICGRNRT-LASTLQSEEWKIPVKVRGFETQMEKWMGA-------CDCII-TKAG---PGTIAEALIRGLPII 368 (462)
Q Consensus 302 ~~~~~lv-v~G~~~~-l~~~~~~~~~~~~V~~~g~~~~~~~l~~~-------aD~vV-~~sg---~~t~~EAla~G~PvI 368 (462)
++++++. ++..+.+ .++..++++... .....++.++++. .|+|+ +.+- ...+.+|+..|++|+
T Consensus 38 ~~~~lva~v~d~~~~~a~~~a~~~g~~~----~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl 113 (398)
T 3dty_A 38 NTFVLVAGAFDIDPIRGSAFGEQLGVDS----ERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVV 113 (398)
T ss_dssp GSEEEEEEECCSSHHHHHHHHHHTTCCG----GGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEEeCCCHHHHHHHHHHhCCCc----ceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 3456654 6677654 233334444321 0123567788876 78765 3322 456789999999999
Q ss_pred Eec
Q 012492 369 LND 371 (462)
Q Consensus 369 ~~~ 371 (462)
+=.
T Consensus 114 ~EK 116 (398)
T 3dty_A 114 CEK 116 (398)
T ss_dssp ECS
T ss_pred EeC
Confidence 843
No 243
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=24.97 E-value=4.7e+02 Score=25.29 Aligned_cols=115 Identities=10% Similarity=0.099 Sum_probs=61.0
Q ss_pred eEEEEccCCHH------HHHHHhhccCCCCeEEeccc---hhHHHHHHh-----c-chheecCC---hhhHHHHHHhCCC
Q 012492 305 QLIIICGRNRT------LASTLQSEEWKIPVKVRGFE---TQMEKWMGA-----C-DCIITKAG---PGTIAEALIRGLP 366 (462)
Q Consensus 305 ~~lvv~G~~~~------l~~~~~~~~~~~~V~~~g~~---~~~~~l~~~-----a-D~vV~~sg---~~t~~EAla~G~P 366 (462)
.+.+++|.... ....++.++.+-.+.+.+-. +.+.++.+. + +++|+-+| +..-+=|...-+|
T Consensus 267 ~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva~~t~~P 346 (425)
T 2h31_A 267 RVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYP 346 (425)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHHHHCSSC
T ss_pred eEEEEecCcccHHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHhccCCCC
Confidence 45666666542 23445666766666666543 456666653 4 57777665 2223445667999
Q ss_pred EEEecCCCCc-cccchHHHHH--CCceee-eCCH---HHHHHHHHHHhcCCHHHHHHHHHHH
Q 012492 367 IILNDYIPGQ-EKGNVPYVVD--NGAGVF-TRSP---KETARIVTEWFSTKTDELKRMSENA 421 (462)
Q Consensus 367 vI~~~~~~~~-~~~n~~~l~~--~G~g~~-~~~~---~~la~~i~~ll~~d~~~~~~m~~~a 421 (462)
||..|..... .......+++ .|..+. +... ..++..|.. + .|++.++++.+.-
T Consensus 347 VIgvP~~~~~~G~daLls~vqmp~g~pvatv~~~~nAa~~A~~Il~-~-~~~~l~~kl~~~~ 406 (425)
T 2h31_A 347 VISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFG-L-SNHLVWSKLRASI 406 (425)
T ss_dssp EEECCCCCTTTHHHHGGGTSSCCSSCCCEECCCHHHHHHHHHHHHH-T-TCHHHHHHHHHHH
T ss_pred EEEeeCccccccHHHHHHHhcCCCCCceEEecCchHHHHHHHHHHc-c-CCHHHHHHHHHHH
Confidence 9999974211 0101112333 444432 2332 233333333 2 6888887776543
No 244
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=24.97 E-value=1.1e+02 Score=22.53 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=12.0
Q ss_pred HHHhhCCCEEEECCcc
Q 012492 159 GLMEYKPDIIISVHPL 174 (462)
Q Consensus 159 ~l~~~kPDvVi~~~~~ 174 (462)
.+++.+||+|+.+...
T Consensus 41 ~~~~~~~dlvi~d~~l 56 (122)
T 1zgz_A 41 IMQNQSVDLILLDINL 56 (122)
T ss_dssp HHHHSCCSEEEEESCC
T ss_pred HHhcCCCCEEEEeCCC
Confidence 4567789999987643
No 245
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=24.88 E-value=1.5e+02 Score=22.57 Aligned_cols=16 Identities=25% Similarity=0.040 Sum_probs=12.3
Q ss_pred HHHhhCCCEEEECCcc
Q 012492 159 GLMEYKPDIIISVHPL 174 (462)
Q Consensus 159 ~l~~~kPDvVi~~~~~ 174 (462)
.+++.+||+|+.+...
T Consensus 50 ~l~~~~~dlvi~d~~l 65 (143)
T 2qv0_A 50 FLQHNKVDAIFLDINI 65 (143)
T ss_dssp HHHHCCCSEEEECSSC
T ss_pred HHHhCCCCEEEEecCC
Confidence 4567789999988744
No 246
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=24.57 E-value=96 Score=28.23 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.+.|+|+++.-|-|-.+.+.+||..|.+.|. .|.++|.
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~---rVLLID~ 129 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQTNK---RVLLIDC 129 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHTTTC---CEEEEEC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCC---CEEEEec
Confidence 3456666666778999999999999998863 6666653
No 247
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=24.55 E-value=51 Score=31.24 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=27.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
+.|+|+++--|-|-.+.+.+||.+|.+.| ..|.++|.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G---~rVLlID~ 38 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQG---KRVLYVDC 38 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCC---CcEEEEEc
Confidence 34445555566799999999999999876 46777775
No 248
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=24.42 E-value=1.5e+02 Score=22.64 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCchHHH-HHHHHHHHHhhhcC
Q 012492 61 RTKNVLILMSDTGGGHRA-SAEAIRDAFKIEFG 92 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~-~a~aLa~~L~~~g~ 92 (462)
+|+||+++|++ |.|+.. .+..|.+++.+.|-
T Consensus 20 ~~kkIlvvC~s-G~gTS~ll~~kl~~~~~~~gi 51 (113)
T 1tvm_A 20 SKRKIIVACGG-AVATSTMAAEEIKELCQSHNI 51 (113)
T ss_dssp SSEEEEEESCS-CSSHHHHHHHHHHHHHHHTTC
T ss_pred cccEEEEECCC-CHHHHHHHHHHHHHHHHHcCC
Confidence 46788777643 457776 47788889988763
No 249
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=24.42 E-value=83 Score=29.71 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHh--hhcCCceEEEEEe
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFK--IEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~--~~g~~~~~v~v~d 101 (462)
.++|+|+++.-|-|-.+.+.+||.+|. +.|. .|.++|
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~---rVLLvD 55 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNK---QFLLIS 55 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTS---CEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCC---eEEEEE
Confidence 468999988888899999999999999 7764 556554
No 250
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=24.21 E-value=44 Score=30.45 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCchH---HHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 62 TKNVLILMSDTGGGH---RASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh---~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
||||+|++++. ... ...+..++++++++|+ ++++.|.
T Consensus 1 mm~i~il~~~~-~~~~~~~~s~~~l~~a~~~~G~---~v~~~d~ 40 (316)
T 1gsa_A 1 MIKLGIVMDPI-ANINIKKDSSFAMLLEAQRRGY---ELHYMEM 40 (316)
T ss_dssp CCEEEEECSCG-GGCCTTTCHHHHHHHHHHHTTC---EEEEECG
T ss_pred CceEEEEeCcH-HhCCcCCChHHHHHHHHHHCCC---EEEEEch
Confidence 47999998764 111 1345679999999974 6677764
No 251
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=24.17 E-value=70 Score=29.08 Aligned_cols=38 Identities=8% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCCeEEEEecCCCch----HHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 61 RTKNVLILMSDTGGG----HRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 61 ~~~kIli~~~~~G~G----h~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.+|||++++++. +. -...+.+++++|++.| ++++..|.
T Consensus 2 ~~m~v~vl~gg~-s~e~~vs~~s~~~v~~al~~~g---~~v~~i~~ 43 (307)
T 3r5x_A 2 NAMRIGVIMGGV-SSEKQVSIMTGNEMIANLDKNK---YEIVPITL 43 (307)
T ss_dssp CCEEEEEEECCS-HHHHHHHHHHHHHHHHHSCTTT---EEEEEEEC
T ss_pred CCcEEEEEeCCC-CcchHhHHHHHHHHHHHHHHCC---CEEEEEcc
Confidence 358999999775 22 2345778999999887 46666653
No 252
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=24.15 E-value=3.7e+02 Score=23.61 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=21.2
Q ss_pred HHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEecC
Q 012492 159 GLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITD 200 (462)
Q Consensus 159 ~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~~d 200 (462)
.+...++|-||........... +.... ..++|+|.+..+
T Consensus 71 ~l~~~~vdgii~~~~~~~~~~~-~~~~~--~~~iPvV~~~~~ 109 (293)
T 2iks_A 71 HLLQRQVDAIIVSTSLPPEHPF-YQRWA--NDPFPIVALDRA 109 (293)
T ss_dssp HHHHTTCSEEEECCSSCTTCHH-HHTTT--TSSSCEEEEESC
T ss_pred HHHHcCCCEEEEeCCCCCcHHH-HHHHH--hCCCCEEEECCc
Confidence 3456789988876543222111 11111 148999887554
No 253
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=24.00 E-value=1.7e+02 Score=22.28 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=21.3
Q ss_pred HHHHhhCCCEEEECCcccc--hHH-HHHHHHcCCCCCCeEEEEec
Q 012492 158 AGLMEYKPDIIISVHPLMQ--HIP-LWVLKWQGLQKKVIFVTVIT 199 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~~--~~~-~~~~~~~~~~~~iP~v~~~~ 199 (462)
+.+++.+||+|+.+..... +.. +...+.......+|+|.+..
T Consensus 40 ~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 40 EQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp HHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEEC
T ss_pred HHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEec
Confidence 3456789999998874432 211 11222221114788876543
No 254
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=23.93 E-value=3.8e+02 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=15.5
Q ss_pred HHHHHhhccCCCCeEEeccch
Q 012492 316 LASTLQSEEWKIPVKVRGFET 336 (462)
Q Consensus 316 l~~~~~~~~~~~~V~~~g~~~ 336 (462)
..+.+++.++...|.++|+-.
T Consensus 203 ~~~al~~~G~~~di~vig~d~ 223 (313)
T 3m9w_A 203 AIQALSAQGLSGKVAISGQDA 223 (313)
T ss_dssp HHHHHHTTTCTTTSEECCCSC
T ss_pred HHHHHHHcCCCCCcEEEecCC
Confidence 456677777777799999863
No 255
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=23.72 E-value=1e+02 Score=27.31 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=23.6
Q ss_pred CCeEEEEecC---------------CCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSD---------------TGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~---------------~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
.|+|+|++++ .| ....+||++|.++|. .|.++.
T Consensus 3 gk~vlVTgG~T~E~IDpVR~ItN~SSG----~mG~aiA~~~~~~Ga---~V~lv~ 50 (232)
T 2gk4_A 3 AMKILVTSGGTSEAIDSVRSITNHSTG----HLGKIITETLLSAGY---EVCLIT 50 (232)
T ss_dssp CCEEEEECSBCEEESSSSEEEEECCCC----HHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCEEEEeCCCcccccCceeeccCCCCC----HHHHHHHHHHHHCCC---EEEEEe
Confidence 3678887775 65 456789999999974 556553
No 256
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=23.69 E-value=36 Score=29.91 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=24.5
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
..||+||+..|.....++.-+.. .+||+|.++
T Consensus 148 ~~Pdllvv~Dp~~e~~ai~Ea~~----l~IP~Ialv 179 (218)
T 3r8n_B 148 GLPDALFVIDADHEHIAIKEANN----LGIPVFAIV 179 (218)
T ss_dssp SCCCSCEEEETGGGHHHHHHHHH----HTCCCEEEC
T ss_pred cCCCeEEecCcccccHHHHHHHH----hCCCEEEEE
Confidence 37999999998877776666665 389999754
No 257
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=23.37 E-value=99 Score=26.96 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHHhcc
Q 012492 428 EAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 428 ~~~~~ia~~i~~l~~~~ 444 (462)
-..+++++.+.-+++..
T Consensus 215 ~~~~dva~~~~~l~s~~ 231 (249)
T 3f9i_A 215 GIPEDVAYAVAFLASNN 231 (249)
T ss_dssp BCHHHHHHHHHHHHSGG
T ss_pred cCHHHHHHHHHHHcCCc
Confidence 35789999998888754
No 258
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=23.05 E-value=3.3e+02 Score=22.67 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=26.7
Q ss_pred hCCCEEEecCCCCccccchHHHHHCCc-eeeeCCHHHHHHHHHHHh
Q 012492 363 RGLPIILNDYIPGQEKGNVPYVVDNGA-GVFTRSPKETARIVTEWF 407 (462)
Q Consensus 363 ~G~PvI~~~~~~~~~~~n~~~l~~~G~-g~~~~~~~~la~~i~~ll 407 (462)
..+|+|+......... ......+.|+ +++.+..+++.+.|.+++
T Consensus 150 ~~~piI~ls~~~~~~~-~~~~~~~~Ga~~~l~KP~~~L~~~i~~~l 194 (206)
T 3mm4_A 150 VRTPIIAVSGHDPGSE-EARETIQAGMDAFLDKSLNQLANVIREIE 194 (206)
T ss_dssp CCCCEEEEESSCCCHH-HHHHHHHHTCSEEEETTCTTHHHHHHHHC
T ss_pred CCCcEEEEECCCCcHH-HHHHHHhCCCCEEEcCcHHHHHHHHHHHH
Confidence 4689888764331111 2233445564 677776558888888887
No 259
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.99 E-value=1.2e+02 Score=22.65 Aligned_cols=17 Identities=29% Similarity=0.566 Sum_probs=13.1
Q ss_pred HHHHhhCCCEEEECCcc
Q 012492 158 AGLMEYKPDIIISVHPL 174 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~ 174 (462)
+.+++.+||+|+.+...
T Consensus 40 ~~l~~~~~dlvllD~~~ 56 (122)
T 3gl9_A 40 EKLSEFTPDLIVLXIMM 56 (122)
T ss_dssp HHHTTBCCSEEEECSCC
T ss_pred HHHHhcCCCEEEEeccC
Confidence 34678899999998743
No 260
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=22.87 E-value=68 Score=26.49 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHH
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAF 87 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L 87 (462)
++++.++++..|.|-.+.+..|++.|
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45677778888899999998888877
No 261
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=22.79 E-value=1.4e+02 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=25.8
Q ss_pred CeEEEEecCCC-ch-HHHHHHHHHHHHhhhcCCceEEEEEeccc
Q 012492 63 KNVLILMSDTG-GG-HRASAEAIRDAFKIEFGDEYRIFVKDVCK 104 (462)
Q Consensus 63 ~kIli~~~~~G-~G-h~~~a~aLa~~L~~~g~~~~~v~v~d~~~ 104 (462)
||||++.++.- .| -...+..+++.|++.|+ +|.+.|+.+
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~---ev~~~dL~~ 42 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGC---TVTVSDLYA 42 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTC---EEEEEETTT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCC---EEEEEEhhh
Confidence 79999987642 22 23445577788887764 777777654
No 262
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=22.75 E-value=1.4e+02 Score=22.89 Aligned_cols=18 Identities=28% Similarity=0.104 Sum_probs=13.5
Q ss_pred HHHHhhCCCEEEECCccc
Q 012492 158 AGLMEYKPDIIISVHPLM 175 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~~ 175 (462)
+.+++.+||+|+.+....
T Consensus 45 ~~l~~~~~dlii~D~~l~ 62 (144)
T 3kht_A 45 YQVQQAKYDLIILDIGLP 62 (144)
T ss_dssp HHHTTCCCSEEEECTTCG
T ss_pred HHhhcCCCCEEEEeCCCC
Confidence 346778999999987543
No 263
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=22.70 E-value=1.4e+02 Score=22.48 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEE
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 100 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~ 100 (462)
||||++.|++ |.|-...+..+-++++++|-+ +++..+
T Consensus 3 mkkIll~Cg~-G~sTS~l~~k~~~~~~~~gi~-~~i~a~ 39 (106)
T 1e2b_A 3 KKHIYLFSSA-GMSTSLLVSKMRAQAEKYEVP-VIIEAF 39 (106)
T ss_dssp CEEEEEECSS-STTTHHHHHHHHHHHHHSCCS-EEEEEE
T ss_pred CcEEEEECCC-chhHHHHHHHHHHHHHHCCCC-eEEEEe
Confidence 5789887754 234446667899999988743 444444
No 264
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=22.68 E-value=1.2e+02 Score=27.53 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=26.9
Q ss_pred CCCCeEEEEecCC-CchHH-HHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 60 ERTKNVLILMSDT-GGGHR-ASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 60 ~~~~kIli~~~~~-G~Gh~-~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
+.||||+++.+|. .+|.. ..+..+++.+++.| .++.+.|+.
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G---~eveiidL~ 98 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFG---AETRIFDPS 98 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTT---CEEEEBCCT
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCC---CEEEEEehh
Confidence 4678999999885 12444 34556777777655 467777653
No 265
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=22.62 E-value=1.1e+02 Score=27.43 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHHHhccCC
Q 012492 428 EAVVDIVKDIHDLAAQRGP 446 (462)
Q Consensus 428 ~~~~~ia~~i~~l~~~~~~ 446 (462)
-.++++++.+.-+++....
T Consensus 235 ~~pedvA~~v~fL~s~~~~ 253 (272)
T 4dyv_A 235 MDVAHVASAVVYMASLPLD 253 (272)
T ss_dssp -CHHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHhCCCCc
Confidence 3668999999999886543
No 266
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=22.39 E-value=1e+02 Score=29.35 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=49.7
Q ss_pred CceEEEEccCCHH-HHHHHhhccCCCCeEEeccchhHHHHHHhcchhe--ecCC------hhhHHHHHHhCCCEEEecCC
Q 012492 303 IGQLIIICGRNRT-LASTLQSEEWKIPVKVRGFETQMEKWMGACDCII--TKAG------PGTIAEALIRGLPIILNDYI 373 (462)
Q Consensus 303 ~~~~lvv~G~~~~-l~~~~~~~~~~~~V~~~g~~~~~~~l~~~aD~vV--~~sg------~~t~~EAla~G~PvI~~~~~ 373 (462)
+++++-++..+.+ .++..++++ +.... ++.+++...|+++ ++.. .-...+|+..|++|++=...
T Consensus 31 ~~elvav~~~~~~~a~~~a~~~g----v~~~~---~~~~l~~~~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl 103 (372)
T 4gmf_A 31 GLELVGLLAQGSARSRELAHAFG----IPLYT---SPEQITGMPDIACIVVRSTVAGGAGTQLARHFLARGVHVIQEHPL 103 (372)
T ss_dssp TEEEEEEECCSSHHHHHHHHHTT----CCEES---SGGGCCSCCSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEESCC
T ss_pred CeEEEEEECCCHHHHHHHHHHhC----CCEEC---CHHHHhcCCCEEEEECCCcccchhHHHHHHHHHHcCCcEEEecCC
Confidence 4777777777754 333344444 32332 3344556677643 3322 23468899999999986543
Q ss_pred CCcc-ccchHHHHHCCceeeeCCHHHHHHHHHHHh
Q 012492 374 PGQE-KGNVPYVVDNGAGVFTRSPKETARIVTEWF 407 (462)
Q Consensus 374 ~~~~-~~n~~~l~~~G~g~~~~~~~~la~~i~~ll 407 (462)
.-.+ ..-.+...+.|.-+.+..-.....++++++
T Consensus 104 ~~~ea~~l~~~A~~~g~~~~v~~~yr~~p~vr~~i 138 (372)
T 4gmf_A 104 HPDDISSLQTLAQEQGCCYWINTFYPHTRAGRTWL 138 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECSGGGSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEcCcccCCHHHHHHH
Confidence 2111 111222334566666554222233444444
No 267
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=22.34 E-value=2.6e+02 Score=25.86 Aligned_cols=43 Identities=12% Similarity=-0.136 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 152 YAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 152 ~~~~l~~~l~~~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
...++.+.+++++.|.++..++..+.-....... .++|+|.+.
T Consensus 81 ~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~----~~i~vigiP 123 (319)
T 4a3s_A 81 GREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTE----HGFPCVGVP 123 (319)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHH----TTCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhc----cCCcEEEee
Confidence 3456678899999999888776544332222222 479998775
No 268
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=22.31 E-value=1.4e+02 Score=26.17 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHHhcc
Q 012492 428 EAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 428 ~~~~~ia~~i~~l~~~~ 444 (462)
-..+++++.+.-++...
T Consensus 223 ~~~~dva~~~~~l~s~~ 239 (261)
T 3n74_A 223 LKPDDLAEAAAFLCSPQ 239 (261)
T ss_dssp CCHHHHHHHHHHHTSGG
T ss_pred cCHHHHHHHHHHHcCCc
Confidence 46789999998888644
No 269
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=22.14 E-value=1.1e+02 Score=28.35 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=27.7
Q ss_pred cccccchhhhccCCCC--CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 46 EDDESTVELMQIGAER--TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 46 ~~~~~~~~~~~~~~~~--~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
.|.+|++...+.-..+ ..||.-+++--|-|-.+.+.+||-+|.+.| ..|.++|.
T Consensus 29 ~~~~~~~~~~~~~~~~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G---kkVllID~ 84 (314)
T 3fwy_A 29 ADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG---KRVLQIGC 84 (314)
T ss_dssp ------------------CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred CCCCcccccccCcccCCCCceEEEEECCCccCHHHHHHHHHHHHHHCC---CeEEEEec
Confidence 4666777554433322 234444445456699999999999999987 47777764
No 270
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=22.09 E-value=1.5e+02 Score=26.80 Aligned_cols=72 Identities=17% Similarity=0.364 Sum_probs=36.7
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH-HHHHHhhccCCCCeE-Eeccc---hhHHHH-
Q 012492 268 LPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT-LASTLQSEEWKIPVK-VRGFE---TQMEKW- 341 (462)
Q Consensus 268 ~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~-l~~~~~~~~~~~~V~-~~g~~---~~~~~l- 341 (462)
.+++||+|++.|-+ ..+. +.|.+ ..++ +++++.+.+ +.+..++++. ++. +..-+ +++..+
T Consensus 29 gKvalVTGas~GIG--~aiA----~~la~-----~Ga~-V~i~~r~~~~l~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~ 94 (273)
T 4fgs_A 29 AKIAVITGATSGIG--LAAA----KRFVA-----EGAR-VFITGRRKDVLDAAIAEIGG--GAVGIQADSANLAELDRLY 94 (273)
T ss_dssp TCEEEEESCSSHHH--HHHH----HHHHH-----TTCE-EEEEESCHHHHHHHHHHHCT--TCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCcCCHHH--HHHH----HHHHH-----CCCE-EEEEECCHHHHHHHHHHcCC--CeEEEEecCCCHHHHHHHH
Confidence 35899999887643 2223 33332 2455 456677753 5555555432 222 22222 333333
Q ss_pred ------HHhcchheecCC
Q 012492 342 ------MGACDCIITKAG 353 (462)
Q Consensus 342 ------~~~aD~vV~~sg 353 (462)
+..-|++|..+|
T Consensus 95 ~~~~~~~G~iDiLVNNAG 112 (273)
T 4fgs_A 95 EKVKAEAGRIDVLFVNAG 112 (273)
T ss_dssp HHHHHHHSCEEEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 334588886654
No 271
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=22.05 E-value=1.3e+02 Score=26.53 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHHHHhcc
Q 012492 428 EAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 428 ~~~~~ia~~i~~l~~~~ 444 (462)
-..+++++.+.-++...
T Consensus 225 ~~~~dva~~v~~L~s~~ 241 (259)
T 4e6p_A 225 GTAEDLTGMAIFLASAE 241 (259)
T ss_dssp BCTHHHHHHHHHTTSGG
T ss_pred cCHHHHHHHHHHHhCCc
Confidence 45688888888777643
No 272
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=22.04 E-value=1.1e+02 Score=26.88 Aligned_cols=16 Identities=0% Similarity=0.057 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHhc
Q 012492 428 EAVVDIVKDIHDLAAQ 443 (462)
Q Consensus 428 ~~~~~ia~~i~~l~~~ 443 (462)
...+++++.+.-+++.
T Consensus 223 ~~~~dva~~v~~l~s~ 238 (257)
T 3tpc_A 223 GRAEEYAALVKHICEN 238 (257)
T ss_dssp BCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHccc
Confidence 3568888888888764
No 273
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=21.84 E-value=1.2e+02 Score=27.22 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=37.5
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH-HHHHHhhccCCCCeEEecc-c---hhHHHHH
Q 012492 268 LPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT-LASTLQSEEWKIPVKVRGF-E---TQMEKWM 342 (462)
Q Consensus 268 ~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~-l~~~~~~~~~~~~V~~~g~-~---~~~~~l~ 342 (462)
.+++||+||+.|-+ ..+++.+++ .+.++ ++++++.. ..+..+++ ..++.++.. + +++.++.
T Consensus 16 gk~vlVTGas~gIG--~~~a~~L~~---------~G~~V-~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~ 81 (291)
T 3rd5_A 16 QRTVVITGANSGLG--AVTARELAR---------RGATV-IMAVRDTRKGEAAARTM--AGQVEVRELDLQDLSSVRRFA 81 (291)
T ss_dssp TCEEEEECCSSHHH--HHHHHHHHH---------TTCEE-EEEESCHHHHHHHHTTS--SSEEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCCChHH--HHHHHHHHH---------CCCEE-EEEECCHHHHHHHHHHh--cCCeeEEEcCCCCHHHHHHHH
Confidence 35789999875532 233333332 14454 44566643 33334333 334554321 2 4566666
Q ss_pred Hh---cchheecCC
Q 012492 343 GA---CDCIITKAG 353 (462)
Q Consensus 343 ~~---aD~vV~~sg 353 (462)
+. .|++|..+|
T Consensus 82 ~~~~~iD~lv~nAg 95 (291)
T 3rd5_A 82 DGVSGADVLINNAG 95 (291)
T ss_dssp HTCCCEEEEEECCC
T ss_pred HhcCCCCEEEECCc
Confidence 64 488887665
No 274
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=21.77 E-value=1.8e+02 Score=27.70 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=39.6
Q ss_pred CceEEEEccCCHHH-HHHHhhccCCCCeEEeccchhHHHHHHh--cchhe-ecCC---hhhHHHHHHhCCCEEEecC
Q 012492 303 IGQLIIICGRNRTL-ASTLQSEEWKIPVKVRGFETQMEKWMGA--CDCII-TKAG---PGTIAEALIRGLPIILNDY 372 (462)
Q Consensus 303 ~~~~lvv~G~~~~l-~~~~~~~~~~~~V~~~g~~~~~~~l~~~--aD~vV-~~sg---~~t~~EAla~G~PvI~~~~ 372 (462)
+++++.+|..+.+- .+..++++.. .. .+++.++++. .|+|+ +.+- ...+.+|+..|++|++=.+
T Consensus 58 ~~elvav~d~~~~~a~~~a~~~~~~---~~---y~d~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP 128 (412)
T 4gqa_A 58 RPHLYALADQDQAMAERHAAKLGAE---KA---YGDWRELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKP 128 (412)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTCS---EE---ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred CeEEEEEEcCCHHHHHHHHHHcCCC---eE---ECCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecC
Confidence 46777788887643 3333444321 12 2467788875 46544 3332 4567999999999998554
No 275
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=21.54 E-value=98 Score=31.44 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=30.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
.+++|+|+++..|-|-.+.+.+||.+|.++|. .+.++|
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~---rVLlvd 43 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGK---RVLLVS 43 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCC---cEEEEE
Confidence 45689999888888999999999999998874 555554
No 276
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=21.42 E-value=1.1e+02 Score=28.93 Aligned_cols=39 Identities=5% Similarity=0.117 Sum_probs=31.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHHHHh--hhcCCceEEEEEec
Q 012492 61 RTKNVLILMSDTGGGHRASAEAIRDAFK--IEFGDEYRIFVKDV 102 (462)
Q Consensus 61 ~~~kIli~~~~~G~Gh~~~a~aLa~~L~--~~g~~~~~v~v~d~ 102 (462)
..+||+|+++--|-|-.+.+.+||.+|. ..|. .|.++|.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~---~vllid~ 56 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNE---QFLLIST 56 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTS---CEEEEEC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCC---eEEEEEC
Confidence 3469999998778899999999999999 7763 5566553
No 277
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=21.33 E-value=1.2e+02 Score=25.84 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=28.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEec
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 102 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d~ 102 (462)
|.|.|..+.-|-|-.+.+.+||.+|.++| .|.++|.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g----~VlliD~ 36 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG----ETLLIDG 36 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS----CEEEEEE
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC----CEEEEEC
Confidence 46778877778899999999999999875 4566653
No 278
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.29 E-value=1.6e+02 Score=22.44 Aligned_cols=17 Identities=6% Similarity=-0.132 Sum_probs=13.0
Q ss_pred HHHHhhCCCEEEECCcc
Q 012492 158 AGLMEYKPDIIISVHPL 174 (462)
Q Consensus 158 ~~l~~~kPDvVi~~~~~ 174 (462)
+.+++.+||+|+.+...
T Consensus 44 ~~l~~~~~dlvi~d~~l 60 (140)
T 3grc_A 44 EQVARRPYAAMTVDLNL 60 (140)
T ss_dssp HHHHHSCCSEEEECSCC
T ss_pred HHHHhCCCCEEEEeCCC
Confidence 34667899999998754
No 279
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=21.25 E-value=1.7e+02 Score=22.05 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHHhhCCCEEEECCccc--chHHH-HHHHHcCCCCCCeEEEE
Q 012492 159 GLMEYKPDIIISVHPLM--QHIPL-WVLKWQGLQKKVIFVTV 197 (462)
Q Consensus 159 ~l~~~kPDvVi~~~~~~--~~~~~-~~~~~~~~~~~iP~v~~ 197 (462)
.+++.+||+|+.+...+ .+..+ ...+.. ...+|+|.+
T Consensus 44 ~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~--~~~~~ii~l 83 (133)
T 3b2n_A 44 LIEEYNPNVVILDIEMPGMTGLEVLAEIRKK--HLNIKVIIV 83 (133)
T ss_dssp HHHHHCCSEEEECSSCSSSCHHHHHHHHHHT--TCSCEEEEE
T ss_pred HHhhcCCCEEEEecCCCCCCHHHHHHHHHHH--CCCCcEEEE
Confidence 45677899999887443 33211 112222 246887654
No 280
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=21.23 E-value=93 Score=27.87 Aligned_cols=32 Identities=9% Similarity=0.243 Sum_probs=25.0
Q ss_pred hCCCEEEECCcccchHHHHHHHHcCCCCCCeEEEEe
Q 012492 163 YKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVI 198 (462)
Q Consensus 163 ~kPDvVi~~~~~~~~~~~~~~~~~~~~~~iP~v~~~ 198 (462)
..||+||+..|.....++.-+.. .+||+|.++
T Consensus 116 ~~PdllvV~Dp~~d~~ai~EA~~----l~IP~Ial~ 147 (252)
T 3u5c_A 116 KEPRLVIVTDPRSDAQAIKEASY----VNIPVIALT 147 (252)
T ss_dssp CCCSEEEESCTTTTHHHHHHHHT----TTCCEEEEE
T ss_pred cCCceEEEeCCccchHHHHHHHH----cCCCEEEEE
Confidence 47999999999877776655554 489999765
No 281
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=21.15 E-value=2.2e+02 Score=25.28 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.4
Q ss_pred CcHHHHHHHHHHHHHhccC
Q 012492 427 PEAVVDIVKDIHDLAAQRG 445 (462)
Q Consensus 427 ~~~~~~ia~~i~~l~~~~~ 445 (462)
.-..+++++.+..++.+.+
T Consensus 229 ~~~pedvA~~v~~l~s~~~ 247 (272)
T 2nwq_A 229 PIQPEDIAETIFWIMNQPA 247 (272)
T ss_dssp CBCHHHHHHHHHHHHTSCT
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 3578999999999998654
No 282
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=21.14 E-value=1.4e+02 Score=26.48 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHHhcc
Q 012492 428 EAVVDIVKDIHDLAAQR 444 (462)
Q Consensus 428 ~~~~~ia~~i~~l~~~~ 444 (462)
...+++++.+.-+++..
T Consensus 219 ~~p~dvA~~v~~L~s~~ 235 (271)
T 3tzq_B 219 GEPHEIAELVCFLASDR 235 (271)
T ss_dssp BCHHHHHHHHHHHHSGG
T ss_pred cCHHHHHHHHHHHhCcc
Confidence 36788999988888754
No 283
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=21.02 E-value=90 Score=27.86 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
||||+|++ +| ....+|+++|.++|+ +|++.+
T Consensus 3 ~~~ilVtG--aG----~iG~~l~~~L~~~g~---~V~~~~ 33 (286)
T 3gpi_A 3 LSKILIAG--CG----DLGLELARRLTAQGH---EVTGLR 33 (286)
T ss_dssp CCCEEEEC--CS----HHHHHHHHHHHHTTC---CEEEEE
T ss_pred CCcEEEEC--CC----HHHHHHHHHHHHCCC---EEEEEe
Confidence 57899885 34 455678899988874 555554
No 284
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=21.02 E-value=63 Score=29.73 Aligned_cols=30 Identities=20% Similarity=-0.061 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
+|||+|++++ .+..+++++++.|+ ++++++
T Consensus 2 ~m~Ililg~g-------~~~~l~~a~~~~G~---~v~~~~ 31 (334)
T 2r85_A 2 KVRIATYASH-------SALQILKGAKDEGF---ETIAFG 31 (334)
T ss_dssp CSEEEEESST-------THHHHHHHHHHTTC---CEEEES
T ss_pred ceEEEEECCh-------hHHHHHHHHHhCCC---EEEEEE
Confidence 4799998765 45689999999874 566664
No 285
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=20.88 E-value=4.4e+02 Score=23.36 Aligned_cols=34 Identities=15% Similarity=-0.010 Sum_probs=19.9
Q ss_pred CCceEEEEccCCH--HHHHHHhhccCCCCeEEeccc
Q 012492 302 PIGQLIIICGRNR--TLASTLQSEEWKIPVKVRGFE 335 (462)
Q Consensus 302 ~~~~~lvv~G~~~--~l~~~~~~~~~~~~V~~~g~~ 335 (462)
|+...++...+.. ...+.+++.+....|.++|+-
T Consensus 181 ~~~~ai~~~~d~~a~g~~~al~~~G~p~dv~vvg~d 216 (313)
T 2h3h_A 181 PDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFD 216 (313)
T ss_dssp TTCCEEEECSTTHHHHHHHHHHHTTCTTTSEEEEEC
T ss_pred cCceEEEEcCCCccHHHHHHHHHcCCCCCeEEEEeC
Confidence 4444454444333 244566667776778888875
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=20.81 E-value=1.2e+02 Score=24.97 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=23.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHHHHhhhc
Q 012492 63 KNVLILMSDTGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 63 ~kIli~~~~~G~Gh~~~a~aLa~~L~~~g 91 (462)
|++.++.+..|.|-.+.+..|++.|...|
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g 29 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQG 29 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45666677777899999999999998765
No 287
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=20.71 E-value=4.8e+02 Score=23.74 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=37.9
Q ss_pred CCceEEEEccCCHHHH-HHHhhccCCCCeEEeccchhHHHHHH--hcchheecCC----hhhHHHHHHhCCCEEEe
Q 012492 302 PIGQLIIICGRNRTLA-STLQSEEWKIPVKVRGFETQMEKWMG--ACDCIITKAG----PGTIAEALIRGLPIILN 370 (462)
Q Consensus 302 ~~~~~lvv~G~~~~l~-~~~~~~~~~~~V~~~g~~~~~~~l~~--~aD~vV~~sg----~~t~~EAla~G~PvI~~ 370 (462)
++++++.++..+.+-. +..++++.. .. .+++.++++ .+|+++.... ...+.+|+..|+++++-
T Consensus 32 ~~~~~vav~d~~~~~~~~~a~~~g~~---~~---~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~e 101 (346)
T 3cea_A 32 QGVKLVAACALDSNQLEWAKNELGVE---TT---YTNYKDMIDTENIDAIFIVAPTPFHPEMTIYAMNAGLNVFCE 101 (346)
T ss_dssp SSEEEEEEECSCHHHHHHHHHTTCCS---EE---ESCHHHHHTTSCCSEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCcEEEEEecCCHHHHHHHHHHhCCC---cc---cCCHHHHhcCCCCCEEEEeCChHhHHHHHHHHHHCCCEEEEc
Confidence 4667777777776422 223333321 22 245677786 5888764332 34567889999999874
No 288
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=20.57 E-value=1.5e+02 Score=26.61 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=35.2
Q ss_pred CcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHH-HHHHHhhccCCCCeEEec-cc---hhHHHHH
Q 012492 268 LPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRT-LASTLQSEEWKIPVKVRG-FE---TQMEKWM 342 (462)
Q Consensus 268 ~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~-l~~~~~~~~~~~~V~~~g-~~---~~~~~l~ 342 (462)
.+++||+|++.|-+ ..+.+.++ + .++++ ++++++.+ +.+..+++ ..++.++. -+ +++..++
T Consensus 5 gk~~lVTGas~GIG--~aia~~la----~-----~G~~V-~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~ 70 (281)
T 3zv4_A 5 GEVALITGGASGLG--RALVDRFV----A-----EGARV-AVLDKSAERLRELEVAH--GGNAVGVVGDVRSLQDQKRAA 70 (281)
T ss_dssp TCEEEEETCSSHHH--HHHHHHHH----H-----TTCEE-EEEESCHHHHHHHHHHT--BTTEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCcHHH--HHHHHHHH----H-----CcCEE-EEEeCCHHHHHHHHHHc--CCcEEEEEcCCCCHHHHHHHH
Confidence 35789998876532 23333333 2 13454 45566653 33333332 23444332 11 3444444
Q ss_pred H-------hcchheecCC
Q 012492 343 G-------ACDCIITKAG 353 (462)
Q Consensus 343 ~-------~aD~vV~~sg 353 (462)
. .-|++|..+|
T Consensus 71 ~~~~~~~g~iD~lvnnAg 88 (281)
T 3zv4_A 71 ERCLAAFGKIDTLIPNAG 88 (281)
T ss_dssp HHHHHHHSCCCEEECCCC
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 4 3488887665
No 289
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=20.42 E-value=74 Score=30.00 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCchHH---HHHHHHHHHHhhhcCCceEEEEEecc
Q 012492 62 TKNVLILMSDTGGGHR---ASAEAIRDAFKIEFGDEYRIFVKDVC 103 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~---~~a~aLa~~L~~~g~~~~~v~v~d~~ 103 (462)
+|||++++++...=|. ..+.+++++|++.| ++++.++..
T Consensus 3 ~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g---~~v~~i~~~ 44 (364)
T 2i87_A 3 KENICIVFGGKSAEHEVSILTAQNVLNAIDKDK---YHVDIIYIT 44 (364)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTT---EEEEEEEEC
T ss_pred CcEEEEEECCCCccchhHHHHHHHHHHHHhhcC---CEEEEEEEc
Confidence 5799999987633343 35678999998886 577766643
No 290
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=20.40 E-value=1.6e+02 Score=26.25 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHhhhcccCCCCCceEEEEccCCHHHHHHHhhccCCCCeEEeccc--hhHHHHHHh
Q 012492 267 ILPAVLLMGGGEGMGPVKETAMALGESLLDKETGRPIGQLIIICGRNRTLASTLQSEEWKIPVKVRGFE--TQMEKWMGA 344 (462)
Q Consensus 267 ~~~~iLv~gG~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~lvv~G~~~~l~~~~~~~~~~~~V~~~g~~--~~~~~l~~~ 344 (462)
..+++||+||+.|-+ .++++.|.+ .+++++++.-....+.+..++++......-.... +++..++..
T Consensus 28 ~gk~vlVTGas~gIG------~aia~~la~-----~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 96 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIG------LAVARRLAD-----EGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDA 96 (277)
T ss_dssp TTCEEEETTTTSTHH------HHHHHHHHH-----TTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHH------HHHHHHHHH-----CCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHH
Q ss_pred c-------chheecCC
Q 012492 345 C-------DCIITKAG 353 (462)
Q Consensus 345 a-------D~vV~~sg 353 (462)
+ |++|..+|
T Consensus 97 ~~~~~g~iD~lvnnAg 112 (277)
T 3gvc_A 97 CVAAFGGVDKLVANAG 112 (277)
T ss_dssp HHHHHSSCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
No 291
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=20.18 E-value=1.5e+02 Score=22.75 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=20.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
.|+|+|++. | .....+++.|.+.|+ ++.+.|
T Consensus 4 ~m~i~IiG~--G----~iG~~~a~~L~~~g~---~v~~~d 34 (140)
T 1lss_A 4 GMYIIIAGI--G----RVGYTLAKSLSEKGH---DIVLID 34 (140)
T ss_dssp -CEEEEECC--S----HHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCEEEEECC--C----HHHHHHHHHHHhCCC---eEEEEE
Confidence 478988843 3 334567888888763 666665
No 292
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=20.11 E-value=1.2e+02 Score=22.31 Aligned_cols=16 Identities=38% Similarity=0.351 Sum_probs=12.0
Q ss_pred HHHhhCCCEEEECCcc
Q 012492 159 GLMEYKPDIIISVHPL 174 (462)
Q Consensus 159 ~l~~~kPDvVi~~~~~ 174 (462)
.+++.+||+|+.+...
T Consensus 40 ~~~~~~~dlvl~D~~l 55 (120)
T 2a9o_A 40 QFEAEQPDIIILDLML 55 (120)
T ss_dssp HHHHHCCSEEEECSSC
T ss_pred HHHhCCCCEEEEeccC
Confidence 3566789999988743
No 293
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=20.11 E-value=4.2e+02 Score=25.20 Aligned_cols=67 Identities=9% Similarity=0.040 Sum_probs=39.6
Q ss_pred CCceEEE-EccCCHH-HHHHHhhccCCCCeEEeccchhHHHHHHh-------cchhee-cC-C--hhhHHHHHHhCCCEE
Q 012492 302 PIGQLII-ICGRNRT-LASTLQSEEWKIPVKVRGFETQMEKWMGA-------CDCIIT-KA-G--PGTIAEALIRGLPII 368 (462)
Q Consensus 302 ~~~~~lv-v~G~~~~-l~~~~~~~~~~~~V~~~g~~~~~~~l~~~-------aD~vV~-~s-g--~~t~~EAla~G~PvI 368 (462)
++++++. ++..+.+ .++..++++... .....++.++++. .|+|+. .+ . ...+.+|+..|++|+
T Consensus 63 ~~~~lva~v~d~~~~~a~~~a~~~g~~~----~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl 138 (417)
T 3v5n_A 63 DHYELVAGALSSTPEKAEASGRELGLDP----SRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVI 138 (417)
T ss_dssp SCEEEEEEECCSSHHHHHHHHHHHTCCG----GGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEE
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHcCCCc----ccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEE
Confidence 4566664 6777764 233334443321 0123567788877 787653 22 2 455788999999998
Q ss_pred EecC
Q 012492 369 LNDY 372 (462)
Q Consensus 369 ~~~~ 372 (462)
+=..
T Consensus 139 ~EKP 142 (417)
T 3v5n_A 139 CDKP 142 (417)
T ss_dssp EESS
T ss_pred EECC
Confidence 8544
No 294
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=20.09 E-value=1.1e+02 Score=26.56 Aligned_cols=34 Identities=6% Similarity=0.069 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHHHhhhcCCceEEEEEe
Q 012492 62 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 101 (462)
Q Consensus 62 ~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g~~~~~v~v~d 101 (462)
|||..++++++| ....+|++.|.++|. +.|.+.+
T Consensus 22 ~mk~vlVtGatG----~iG~~l~~~L~~~G~--~~V~~~~ 55 (236)
T 3qvo_A 22 HMKNVLILGAGG----QIARHVINQLADKQT--IKQTLFA 55 (236)
T ss_dssp CCEEEEEETTTS----HHHHHHHHHHTTCTT--EEEEEEE
T ss_pred cccEEEEEeCCc----HHHHHHHHHHHhCCC--ceEEEEE
Confidence 344445555554 344678899998862 4666554
No 295
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.01 E-value=1.5e+02 Score=23.02 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=17.8
Q ss_pred ccCCCCCCeEEEEecCCCchHHHHHHHHHHHHhhhc
Q 012492 56 QIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEF 91 (462)
Q Consensus 56 ~~~~~~~~kIli~~~~~G~Gh~~~a~aLa~~L~~~g 91 (462)
..+...|+||+++-.+. .....|.+.|...+
T Consensus 14 ~~~~~~m~~iLivdd~~-----~~~~~l~~~L~~~~ 44 (150)
T 4e7p_A 14 LVPRGSHMKVLVAEDQS-----MLRDAMCQLLTLQP 44 (150)
T ss_dssp ------CEEEEEECSCH-----HHHHHHHHHHHTST
T ss_pred CCCCCCccEEEEEcCCH-----HHHHHHHHHHHhCC
Confidence 34455678999987654 45566778887654
Done!