BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012494
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 136 bits (342), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/102 (56%), Positives = 78/102 (76%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
VKGPW+ EED + LV ++G + W +IA+ + GR GK CR RW N L+P +K+ +T+E
Sbjct: 6 VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
ED+II AH V GN+WA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 134 bits (338), Expect = 8e-32, Method: Composition-based stats.
Identities = 58/102 (56%), Positives = 78/102 (76%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
+KGPW+ EED + +LV ++G + W +IA+ + GR GK CR RW N L+P +K+ +T+E
Sbjct: 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
ED+II AH GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 78/102 (76%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
+KGPW+ EED + +LV ++G + W +IA+ + GR GK CR RW N L+P +K+ +T+E
Sbjct: 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
ED+II AH GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 134 bits (337), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/102 (56%), Positives = 78/102 (76%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
+KGPW+ EED + +LV ++G + W +IA+ + GR GK CR RW N L+P +K+ +T+E
Sbjct: 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
ED+II AH GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 126 bits (317), Expect = 3e-29, Method: Composition-based stats.
Identities = 56/101 (55%), Positives = 74/101 (73%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEE 108
KGPW+ EED + V ++G + W IA+ + GR GK CR RW N L+P +K+ +T+EE
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 109 DQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
D+II AH GN+WA IA+LLPGRTDNA+KNHWNST+RR+
Sbjct: 87 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 71/113 (62%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDE 107
+KGP++ ED ++ V + G +NW I +P RS K CR RW N LDP + + +T E
Sbjct: 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDLGRFKPAL 160
ED+ I + G+KW+VIA+L+PGRTDNAIKN WNS++ +R + K L
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEIL 113
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 92.8 bits (229), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEE 108
K ++PEED +L R V+Q G+ +W MIA P R+ + CR RW N L P + P+T EE
Sbjct: 11 KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 109 DQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHW 142
D +++ +G +WA+IA+ PGRTD IKN W
Sbjct: 70 DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTL 146
K++ FT EED+++ A A HG+ W +IA P R ++ W + L
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 62/101 (61%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEE 108
K ++ EED L +LV ++GA++W I++ + R+ + CR RW N ++P L+ P++ EE
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 109 DQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
D ++ +A +G KW I++ L R+DN I+N W R R
Sbjct: 61 DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 79.0 bits (193), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 99 LKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
+K+ +T+EED+II AH GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRW 91
K W+ EED ++ + + G R W IA+ +PGR+ + + W
Sbjct: 3 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHW 44
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 99 LKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRR 149
+K+ +T+EED+I+ AH GN+WA IA+LLPGRTDNAIKNHWNST+RR+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRW 91
K W+ EED +L + + G R W IA+ +PGR+ + + W
Sbjct: 5 KTSWTEEEDRILYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHW 46
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
+KGPW+ EED L +LV ++G + W +IA+ + GR GK CR RW N L+P
Sbjct: 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 99 LKRKPFTDEEDQIIISAHAVHGNK-WAVIARLLPGRTDNAIKNHWNSTL 146
L + P+T EEDQ +I +G K W+VIA+ L GR + W++ L
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 61.6 bits (148), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
+KGPW+ EED + +LV ++G + W +IA+ + GR GK CR RW N L+P
Sbjct: 2 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 35.0 bits (79), Expect = 0.081, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 99 LKRKPFTDEEDQIIISAHAVHGNK-WAVIARLLPGRTDNAIKNHWNSTL 146
L + P+T EEDQ +I +G K W+VIA+ L GR + W++ L
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
+KGPW+ EED + LV ++G + W +IA+ + GR GK CR RW N L+P
Sbjct: 2 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 35.0 bits (79), Expect = 0.090, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 99 LKRKPFTDEEDQIIISAHAVHGNK-WAVIARLLPGRTDNAIKNHWNSTL 146
L + P+T EEDQ +I +G K W+VIA+ L GR + W++ L
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
K W+ EED L +LV Q G +W +IA +P R+ C+ RW L+P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 99 LKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTL 146
L + +T EED+ + +G + W VIA LP RTD ++ W L
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97
K W+ EED L +LV Q G +W +IA +P R+ C+ RW L+P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 99 LKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTL 146
L + +T EED+ + +G + W VIA LP RTD ++ W L
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQL 95
K W+ EED L LV QFG ++W +A P R+ + C+ RW L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 70
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 52 WSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFT 105
W ED +L V ++G W IA + +S K C+ RW LDP +K+ ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 32.0 bits (71), Expect = 0.65, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 51 PWSPEEDAVLSRLVSQFGARN---WGMIARGIPGRSGKSCRLRW 91
PW+ EE +L + + + W IA +PGR+ K C R+
Sbjct: 5 PWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRY 48
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 226 FPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFS 285
FP G N + E RD ++ ++++ + +E G + P+P VS
Sbjct: 70 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG-K 128
Query: 286 LYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGI 319
Y +P L G+P + P + Q P LGI
Sbjct: 129 KYTAPHILIATGGMP-STPHES---QIPGASLGI 158
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 226 FPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFS 285
FP G N + E RD ++ ++++ + +E G + P+P VS
Sbjct: 87 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG-K 145
Query: 286 LYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGI 319
Y +P L G+P + P + Q P LGI
Sbjct: 146 KYTAPHILIATGGMP-STPHES---QIPGASLGI 175
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 226 FPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFS 285
FP G N + E RD ++ ++++ + +E G + P+P VS
Sbjct: 87 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG-K 145
Query: 286 LYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGI 319
Y +P L G+P + P + Q P LGI
Sbjct: 146 KYTAPHILIATGGMP-STPHES---QIPGASLGI 175
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 226 FPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFS 285
FP G N + E RD ++ ++++ + +E G + P+P VS
Sbjct: 87 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG-K 145
Query: 286 LYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGI 319
Y +P L G+P + P + Q P LGI
Sbjct: 146 KYTAPHILIATGGMP-STPHES---QIPGASLGI 175
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 226 FPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFS 285
FP G N + E RD ++ ++++ + +E G + P+P VS
Sbjct: 87 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG-K 145
Query: 286 LYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGI 319
Y +P L G+P + P + Q P LGI
Sbjct: 146 KYTAPHILIATGGMP-STPHES---QIPGASLGI 175
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 226 FPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFS 285
FP G N + E RD ++ ++++ + +E G + P+P VS
Sbjct: 88 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG-K 146
Query: 286 LYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGI 319
Y +P L G+P + P + Q P LGI
Sbjct: 147 KYTAPHILIATGGMP-STPHES---QIPGASLGI 176
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 226 FPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFS 285
FP G N + E RD ++ ++++ + +E G + P+P VS
Sbjct: 86 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG-K 144
Query: 286 LYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGI 319
Y +P L G+P + P + Q P LGI
Sbjct: 145 KYTAPHILIATGGMP-STPHES---QIPGASLGI 174
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 226 FPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFS 285
FP G N + E RD ++ ++++ + +E G + P+P VS
Sbjct: 87 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG-K 145
Query: 286 LYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGI 319
Y +P L G+P + P + Q P LGI
Sbjct: 146 KYTAPHILIATGGMP-STPHES---QIPGASLGI 175
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 226 FPCPVGDINSCKLPEGRDVTMNDTPKMHEDRAERMEVEFAAGPKPHPTLPRPVARVSAFS 285
FP G N + E RD ++ ++++ + +E G + P+P VS
Sbjct: 70 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG-K 128
Query: 286 LYNSPSGLTPCSGIPRAVPTQGPLVQAPRLDLGI 319
Y +P L G+P + P + Q P LGI
Sbjct: 129 KYTAPHILIATGGMP-STPHES---QIPGASLGI 158
>pdb|1IGN|A Chain A, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
pdb|1IGN|B Chain B, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
Length = 246
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 97 PCLKRKPFTDEEDQIII----------SAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTL 146
P + FTDEED+ I+ + H ++ I+ +P T N+I++ + L
Sbjct: 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDE----ISHYVPNHTGNSIRHRFRVYL 59
Query: 147 RRRY---TDLGRFKPALGDMTEDGSLDRTK 173
+R ++ +F + D +DG+L +TK
Sbjct: 60 SKRLEYVYEVDKFGKLVRD--DDGNLIKTK 87
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 28.5 bits (62), Expect = 7.3, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 102 KPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHW 142
+P++ +E++ A AV+ ++WA +AR + GRT +K H+
Sbjct: 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53
>pdb|3RGB|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
pdb|3RGB|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
pdb|3RGB|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
Length = 414
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 130 LPGRTDN---AIKNHWNSTLRRRYTDLGRFKPALGDMTEDGSLDRTKGS-----SEETLS 181
+PGR I NH NS +R LG F A + T G +E+ LS
Sbjct: 293 VPGRAMRMKLTITNHGNSPIR-----LGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLS 347
Query: 182 VGDVNPLKPLEGR--DVTMDDRP---NRLEDM 208
V D +PL P E R DVT D RL D+
Sbjct: 348 VSDNSPLAPGETRTVDVTASDAAWEVYRLSDI 379
>pdb|1YEW|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
pdb|1YEW|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
pdb|1YEW|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
Length = 382
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 130 LPGRTDN---AIKNHWNSTLRRRYTDLGRFKPALGDMTEDGSLDRTKGS-----SEETLS 181
+PGR I NH NS +R LG F A + T G +E+ LS
Sbjct: 261 VPGRAMRMKLTITNHGNSPIR-----LGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLS 315
Query: 182 VGDVNPLKPLEGR--DVTMDDRP---NRLEDM 208
V D +PL P E R DVT D RL D+
Sbjct: 316 VSDNSPLAPGETRTVDVTASDAAWEVYRLSDI 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,217,125
Number of Sequences: 62578
Number of extensions: 612000
Number of successful extensions: 851
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 47
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)