Query 012494
Match_columns 462
No_of_seqs 278 out of 1502
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 9.4E-33 3.2E-37 233.8 11.0 104 47-150 2-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.6E-32 8.8E-37 233.0 10.9 103 49-151 1-103 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 4.6E-32 1.6E-36 238.9 10.2 107 48-154 1-107 (131)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 9.2E-32 3.1E-36 235.6 10.3 107 44-150 22-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 1.6E-31 5.5E-36 234.2 11.5 105 44-149 6-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 9.4E-30 3.2E-34 230.0 10.0 107 44-150 53-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 1.9E-28 6.3E-33 221.6 5.5 101 47-147 4-105 (159)
8 2dim_A Cell division cycle 5-l 99.8 2.8E-21 9.4E-26 153.6 4.2 67 43-109 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 6.6E-20 2.3E-24 160.4 6.6 73 75-147 1-74 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 6.8E-18 2.3E-22 163.2 8.3 106 44-149 3-200 (246)
11 2d9a_A B-MYB, MYB-related prot 99.7 2.2E-17 7.7E-22 127.3 5.4 58 43-100 2-59 (60)
12 2juh_A Telomere binding protei 99.7 1.4E-17 4.7E-22 146.8 4.6 85 41-125 9-103 (121)
13 2roh_A RTBP1, telomere binding 99.7 1.1E-16 3.7E-21 141.3 7.1 80 43-122 25-114 (122)
14 2llk_A Cyclin-D-binding MYB-li 99.7 5.8E-17 2E-21 131.3 4.8 58 87-145 9-66 (73)
15 1gvd_A MYB proto-oncogene prot 99.6 1.1E-16 3.6E-21 120.2 4.6 52 47-98 1-52 (52)
16 1ity_A TRF1; helix-turn-helix, 99.6 1.7E-16 5.9E-21 125.8 4.9 63 43-105 4-68 (69)
17 1guu_A C-MYB, MYB proto-oncoge 99.6 1.8E-16 6E-21 118.9 3.8 52 47-98 1-52 (52)
18 2din_A Cell division cycle 5-l 99.6 1E-15 3.4E-20 120.2 6.9 59 94-153 2-60 (66)
19 2cu7_A KIAA1915 protein; nucle 99.6 2.4E-15 8.1E-20 120.2 8.1 58 95-152 3-60 (72)
20 1x41_A Transcriptional adaptor 99.6 7E-16 2.4E-20 119.4 4.4 56 43-98 2-57 (60)
21 3sjm_A Telomeric repeat-bindin 99.6 5.4E-16 1.8E-20 122.3 3.7 57 44-100 6-64 (64)
22 2d9a_A B-MYB, MYB-related prot 99.5 4E-15 1.4E-19 114.6 5.5 54 96-149 3-57 (60)
23 2dim_A Cell division cycle 5-l 99.5 2.4E-14 8.3E-19 113.5 8.3 55 96-150 4-59 (70)
24 1w0t_A Telomeric repeat bindin 99.5 5E-15 1.7E-19 111.8 3.7 49 48-96 1-51 (53)
25 1guu_A C-MYB, MYB proto-oncoge 99.5 1.6E-14 5.3E-19 108.2 6.4 49 99-147 1-50 (52)
26 2yum_A ZZZ3 protein, zinc fing 99.5 4.1E-15 1.4E-19 119.3 2.7 61 43-103 2-67 (75)
27 2elk_A SPCC24B10.08C protein; 99.5 9.5E-15 3.3E-19 112.6 4.2 51 45-95 5-56 (58)
28 1ity_A TRF1; helix-turn-helix, 99.5 3.4E-14 1.2E-18 112.6 7.3 59 94-152 3-64 (69)
29 1w0t_A Telomeric repeat bindin 99.5 2.8E-14 9.5E-19 107.7 6.5 50 100-149 1-53 (53)
30 1gvd_A MYB proto-oncogene prot 99.5 2.8E-14 9.6E-19 107.0 5.9 49 99-147 1-50 (52)
31 1x41_A Transcriptional adaptor 99.5 3.8E-14 1.3E-18 109.7 6.5 52 96-147 3-55 (60)
32 2din_A Cell division cycle 5-l 99.5 4.1E-15 1.4E-19 116.7 0.2 57 44-102 4-60 (66)
33 2cu7_A KIAA1915 protein; nucle 99.4 2.1E-14 7.2E-19 114.7 2.8 59 42-101 2-60 (72)
34 2yum_A ZZZ3 protein, zinc fing 99.4 8.2E-14 2.8E-18 111.7 5.9 56 96-151 3-64 (75)
35 2aje_A Telomere repeat-binding 99.4 7E-14 2.4E-18 120.5 4.8 83 39-121 3-95 (105)
36 3sjm_A Telomeric repeat-bindin 99.4 2.1E-13 7.3E-18 107.4 6.8 51 99-149 9-62 (64)
37 2elk_A SPCC24B10.08C protein; 99.4 2.9E-13 9.9E-18 104.3 6.7 50 97-146 5-56 (58)
38 2ltp_A Nuclear receptor corepr 99.1 3E-14 1E-18 118.7 0.0 58 93-150 8-65 (89)
39 2yus_A SWI/SNF-related matrix- 99.4 5.1E-13 1.8E-17 109.4 5.6 53 41-94 10-62 (79)
40 2ckx_A NGTRF1, telomere bindin 99.4 7E-13 2.4E-17 109.8 6.1 69 50-118 1-79 (83)
41 3zqc_A MYB3; transcription-DNA 99.3 6.6E-13 2.3E-17 116.7 3.9 82 44-130 49-130 (131)
42 2llk_A Cyclin-D-binding MYB-li 99.3 1.1E-12 3.8E-17 106.2 4.6 54 44-100 18-71 (73)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.3 3.2E-12 1.1E-16 103.5 6.2 51 97-147 14-68 (73)
44 2yus_A SWI/SNF-related matrix- 99.3 3.3E-12 1.1E-16 104.6 4.6 48 98-145 15-62 (79)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.6E-12 8.9E-17 104.0 3.7 53 44-96 13-68 (73)
46 3osg_A MYB21; transcription-DN 99.2 9.6E-12 3.3E-16 108.7 7.2 52 96-147 6-57 (126)
47 2ltp_A Nuclear receptor corepr 98.9 8.4E-13 2.9E-17 109.9 0.0 57 40-97 7-63 (89)
48 1gv2_A C-MYB, MYB proto-oncoge 99.2 1.1E-11 3.9E-16 104.4 6.3 48 99-146 2-50 (105)
49 2ckx_A NGTRF1, telomere bindin 99.2 3.8E-11 1.3E-15 99.4 6.8 50 102-151 1-55 (83)
50 2k9n_A MYB24; R2R3 domain, DNA 99.1 4.9E-11 1.7E-15 101.4 6.1 47 101-147 1-48 (107)
51 2juh_A Telomere binding protei 99.1 8.6E-11 2.9E-15 103.6 7.3 57 94-150 10-71 (121)
52 1ign_A Protein (RAP1); RAP1,ye 99.1 3.2E-11 1.1E-15 116.8 5.0 55 97-151 4-64 (246)
53 2aje_A Telomere repeat-binding 99.1 1E-10 3.5E-15 100.8 7.5 54 97-150 9-67 (105)
54 1x58_A Hypothetical protein 49 99.1 7.6E-11 2.6E-15 92.9 6.0 50 99-148 6-58 (62)
55 2cjj_A Radialis; plant develop 99.1 1.3E-10 4.5E-15 98.0 6.9 50 100-149 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.0 3.6E-10 1.2E-14 99.7 7.8 55 97-151 27-86 (122)
57 2cjj_A Radialis; plant develop 99.0 1.8E-10 6.3E-15 97.2 2.5 48 48-95 7-57 (93)
58 1x58_A Hypothetical protein 49 98.9 1.4E-09 4.8E-14 85.7 4.1 51 45-96 4-57 (62)
59 2eqr_A N-COR1, N-COR, nuclear 98.9 3.1E-09 1.1E-13 82.6 6.0 48 100-147 11-58 (61)
60 2eqr_A N-COR1, N-COR, nuclear 98.8 2.7E-09 9.2E-14 82.9 4.9 50 45-95 8-57 (61)
61 3hm5_A DNA methyltransferase 1 98.8 9.2E-09 3.2E-13 87.0 6.6 65 85-153 18-87 (93)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.8 1.1E-08 3.6E-13 82.6 6.5 52 98-150 5-60 (72)
63 2iw5_B Protein corest, REST co 98.7 1.3E-08 4.6E-13 98.0 6.2 49 100-148 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.6 1.2E-08 4.1E-13 82.3 2.5 51 45-96 4-57 (72)
65 2xag_B REST corepressor 1; ami 98.5 4.4E-08 1.5E-12 103.1 4.9 45 102-146 381-425 (482)
66 1wgx_A KIAA1903 protein; MYB D 98.4 2.8E-07 9.6E-12 74.8 5.0 46 101-146 8-57 (73)
67 2iw5_B Protein corest, REST co 98.3 3.1E-07 1.1E-11 88.6 4.6 51 45-96 129-179 (235)
68 1wgx_A KIAA1903 protein; MYB D 98.3 7.4E-07 2.5E-11 72.3 5.2 48 50-97 9-59 (73)
69 1fex_A TRF2-interacting telome 98.3 9.2E-07 3.1E-11 68.7 5.4 47 101-147 2-58 (59)
70 1fex_A TRF2-interacting telome 98.3 2.9E-07 1E-11 71.5 2.5 48 49-96 2-58 (59)
71 1ofc_X ISWI protein; nuclear p 98.2 4.7E-06 1.6E-10 83.4 9.1 100 50-149 111-276 (304)
72 2yqk_A Arginine-glutamic acid 98.0 1.4E-05 4.6E-10 62.5 6.8 50 97-146 5-55 (63)
73 1ug2_A 2610100B20RIK gene prod 97.8 4.8E-05 1.6E-09 64.1 7.6 47 102-148 34-83 (95)
74 2yqk_A Arginine-glutamic acid 97.8 1.6E-05 5.6E-10 62.1 4.4 50 43-93 3-53 (63)
75 4eef_G F-HB80.4, designed hema 97.8 4E-06 1.4E-10 68.2 0.2 44 49-92 20-66 (74)
76 4eef_G F-HB80.4, designed hema 97.7 6.2E-06 2.1E-10 67.0 0.7 43 101-143 20-66 (74)
77 2lr8_A CAsp8-associated protei 96.9 5.3E-06 1.8E-10 66.5 0.0 44 103-147 16-62 (70)
78 4iej_A DNA methyltransferase 1 97.6 0.00013 4.5E-09 61.7 7.1 51 102-152 31-86 (93)
79 2crg_A Metastasis associated p 97.5 0.00021 7.1E-09 57.0 6.4 45 100-144 7-52 (70)
80 4a69_C Nuclear receptor corepr 97.5 0.00016 5.6E-09 60.7 5.9 45 101-145 43-87 (94)
81 2xag_B REST corepressor 1; ami 97.4 7.7E-05 2.6E-09 78.7 4.5 49 45-94 376-424 (482)
82 2crg_A Metastasis associated p 97.3 0.00023 7.9E-09 56.7 4.9 46 47-93 6-52 (70)
83 4b4c_A Chromodomain-helicase-D 97.2 0.0013 4.3E-08 61.1 9.4 102 47-148 5-196 (211)
84 4a69_C Nuclear receptor corepr 97.2 0.00023 7.9E-09 59.8 3.6 44 49-93 43-86 (94)
85 2ebi_A DNA binding protein GT- 97.1 0.00036 1.2E-08 56.8 4.2 51 101-152 4-68 (86)
86 3hm5_A DNA methyltransferase 1 97.1 0.00023 7.7E-09 60.2 3.0 45 50-95 31-80 (93)
87 2y9y_A Imitation switch protei 97.0 0.0021 7.2E-08 66.0 9.5 103 50-152 124-295 (374)
88 2ebi_A DNA binding protein GT- 96.6 0.00047 1.6E-08 56.1 0.9 49 47-95 2-63 (86)
89 2lr8_A CAsp8-associated protei 95.2 0.00077 2.6E-08 54.1 0.0 46 50-96 15-62 (70)
90 1ug2_A 2610100B20RIK gene prod 96.1 0.0086 2.9E-07 50.6 5.7 45 50-94 34-80 (95)
91 4iej_A DNA methyltransferase 1 93.3 0.051 1.8E-06 45.9 3.2 45 50-95 31-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 92.6 0.29 9.8E-06 38.7 6.4 48 99-146 5-57 (64)
93 1irz_A ARR10-B; helix-turn-hel 92.0 0.14 4.9E-06 40.4 4.0 50 44-93 2-55 (64)
94 1ofc_X ISWI protein; nuclear p 91.9 0.25 8.4E-06 49.5 6.6 49 101-150 110-159 (304)
95 2xb0_X Chromo domain-containin 90.3 0.19 6.5E-06 49.5 3.9 28 50-77 169-196 (270)
96 4b4c_A Chromodomain-helicase-D 90.1 0.38 1.3E-05 44.3 5.7 50 99-148 5-59 (211)
97 2xb0_X Chromo domain-containin 74.0 6.2 0.00021 38.8 6.9 48 101-148 3-55 (270)
98 2o8x_A Probable RNA polymerase 64.4 11 0.00037 27.6 5.0 43 104-148 16-58 (70)
99 2y9y_A Imitation switch protei 64.3 11 0.00037 38.8 6.5 52 101-153 123-176 (374)
100 1ku3_A Sigma factor SIGA; heli 60.1 14 0.00047 27.9 5.0 41 107-148 13-57 (73)
101 3r46_A Coiled coil helix L24D; 56.6 5.7 0.00019 27.3 1.9 18 369-386 8-25 (35)
102 2p7v_B Sigma-70, RNA polymeras 54.7 15 0.00051 27.3 4.3 41 107-148 8-52 (68)
103 2li6_A SWI/SNF chromatin-remod 52.2 11 0.00039 31.9 3.7 37 111-147 53-97 (116)
104 3cz6_A DNA-binding protein RAP 50.8 17 0.00057 33.6 4.7 30 44-76 109-146 (168)
105 2lm1_A Lysine-specific demethy 48.7 25 0.00086 29.1 5.2 38 111-148 48-97 (107)
106 3hug_A RNA polymerase sigma fa 46.6 28 0.00096 27.3 5.0 41 107-148 40-80 (92)
107 1kkx_A Transcription regulator 45.9 16 0.00055 31.6 3.7 37 112-148 53-97 (123)
108 2jrz_A Histone demethylase jar 45.1 23 0.00078 30.2 4.4 38 111-148 44-93 (117)
109 2cxy_A BAF250B subunit, HBAF25 42.8 29 0.001 29.7 4.8 38 111-148 55-104 (125)
110 2eqy_A RBP2 like, jumonji, at 41.5 30 0.001 29.7 4.6 38 111-148 46-95 (122)
111 1x3u_A Transcriptional regulat 41.5 48 0.0016 24.7 5.4 42 104-148 17-58 (79)
112 1tty_A Sigma-A, RNA polymerase 37.6 48 0.0017 25.8 5.0 41 107-148 21-65 (87)
113 1or7_A Sigma-24, RNA polymeras 36.4 54 0.0018 28.1 5.6 30 118-148 154-183 (194)
114 1fse_A GERE; helix-turn-helix 36.3 52 0.0018 24.0 4.8 44 102-148 10-53 (74)
115 3ulq_B Transcriptional regulat 35.8 70 0.0024 25.5 5.8 46 100-148 26-71 (90)
116 3i4p_A Transcriptional regulat 35.8 32 0.0011 30.0 4.0 44 107-151 3-47 (162)
117 2kk0_A AT-rich interactive dom 33.9 47 0.0016 29.3 4.8 38 111-148 68-118 (145)
118 1je8_A Nitrate/nitrite respons 33.9 61 0.0021 25.1 5.0 43 103-148 21-63 (82)
119 3c57_A Two component transcrip 33.9 67 0.0023 25.6 5.4 43 103-148 27-69 (95)
120 2li6_A SWI/SNF chromatin-remod 32.7 15 0.00053 31.1 1.4 39 59-97 53-98 (116)
121 3e7l_A Transcriptional regulat 32.6 56 0.0019 24.2 4.4 34 106-140 18-51 (63)
122 1c20_A DEAD ringer protein; DN 32.5 56 0.0019 28.0 5.0 39 110-148 55-106 (128)
123 2jpc_A SSRB; DNA binding prote 32.0 72 0.0025 22.6 4.8 38 109-148 3-40 (61)
124 2jxj_A Histone demethylase jar 31.9 21 0.00073 29.0 2.1 37 111-147 40-88 (96)
125 1ntc_A Protein (nitrogen regul 31.4 69 0.0024 25.5 5.0 36 106-142 50-85 (91)
126 2rq5_A Protein jumonji; develo 29.9 22 0.00077 30.7 2.0 56 59-117 46-113 (121)
127 2yqf_A Ankyrin-1; death domain 29.9 68 0.0023 26.6 4.9 35 105-140 14-48 (111)
128 1xsv_A Hypothetical UPF0122 pr 29.1 91 0.0031 25.8 5.6 39 108-147 29-67 (113)
129 3mzy_A RNA polymerase sigma-H 29.1 69 0.0023 26.3 4.8 30 118-148 122-151 (164)
130 2dbb_A Putative HTH-type trans 29.0 90 0.0031 26.3 5.7 45 107-152 9-54 (151)
131 1rp3_A RNA polymerase sigma fa 28.9 80 0.0028 27.7 5.5 36 112-148 195-230 (239)
132 1tc3_C Protein (TC3 transposas 28.3 1.2E+02 0.0042 19.5 5.5 38 103-142 5-42 (51)
133 1ig6_A MRF-2, modulator recogn 27.9 31 0.001 28.7 2.4 37 111-147 37-86 (107)
134 2q1z_A RPOE, ECF SIGE; ECF sig 27.7 36 0.0012 29.0 2.9 30 118-148 149-178 (184)
135 2rnj_A Response regulator prot 25.3 75 0.0026 24.8 4.2 43 103-148 29-71 (91)
136 2rq5_A Protein jumonji; develo 24.6 72 0.0025 27.5 4.2 37 111-147 46-95 (121)
137 2e1c_A Putative HTH-type trans 24.3 89 0.0031 27.6 4.9 45 106-151 26-71 (171)
138 2o71_A Death domain-containing 23.4 88 0.003 26.6 4.5 33 102-138 20-52 (115)
139 2of5_H Leucine-rich repeat and 23.1 79 0.0027 26.7 4.2 31 109-140 13-43 (118)
140 2cyy_A Putative HTH-type trans 22.4 1.2E+02 0.0039 25.8 5.1 44 107-151 7-51 (151)
141 2of5_A Death domain-containing 22.4 83 0.0028 26.7 4.1 39 96-138 14-52 (114)
142 2p1m_A SKP1-like protein 1A; F 21.6 56 0.0019 28.9 3.0 35 73-114 119-153 (160)
143 1s7o_A Hypothetical UPF0122 pr 20.8 1.5E+02 0.0051 24.7 5.4 42 104-147 23-64 (113)
144 2jvw_A Uncharacterized protein 20.7 75 0.0026 26.4 3.3 45 57-113 18-69 (88)
145 2jrz_A Histone demethylase jar 20.4 50 0.0017 28.0 2.3 39 58-96 43-92 (117)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.98 E-value=9.4e-33 Score=233.79 Aligned_cols=104 Identities=56% Similarity=1.073 Sum_probs=99.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHH
Q 012494 47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVI 126 (462)
Q Consensus 47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskI 126 (462)
.++|+||+|||++|+++|.+||.++|..||+.|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|+.|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 81 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 81 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 67999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHhhh
Q 012494 127 ARLLPGRTDNAIKNHWNSTLRRRY 150 (462)
Q Consensus 127 Ak~LPGRT~~QcKnRWnslLkkkl 150 (462)
|+.|||||+++|++||+.++++++
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHcCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999998763
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=2.6e-32 Score=232.96 Aligned_cols=103 Identities=36% Similarity=0.684 Sum_probs=99.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhh
Q 012494 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIAR 128 (462)
Q Consensus 49 KG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk 128 (462)
||+||+|||++|+++|.+||.++|..||..|++|+++||++||.++|+|.+++++||+|||.+|++++.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhhh
Q 012494 129 LLPGRTDNAIKNHWNSTLRRRYT 151 (462)
Q Consensus 129 ~LPGRT~~QcKnRWnslLkkkl~ 151 (462)
.|||||+++|++||+.++++...
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHH
Confidence 99999999999999999887543
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=4.6e-32 Score=238.88 Aligned_cols=107 Identities=45% Similarity=0.848 Sum_probs=102.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHh
Q 012494 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIA 127 (462)
Q Consensus 48 kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIA 127 (462)
.||+||+|||++|+++|.+||.++|..||..|++|+++||++||.++|+|.+++++||.|||++|+++|.+||++|+.||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 48999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhhhhcC
Q 012494 128 RLLPGRTDNAIKNHWNSTLRRRYTDLG 154 (462)
Q Consensus 128 k~LPGRT~~QcKnRWnslLkkkl~~~~ 154 (462)
++|||||+++|++||+++|++++....
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999988875443
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=9.2e-32 Score=235.61 Aligned_cols=107 Identities=52% Similarity=0.988 Sum_probs=102.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCch
Q 012494 44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKW 123 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkW 123 (462)
.+..++|+||+|||++|+++|.+||.++|..||+.|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W 101 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 101 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 46788999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494 124 AVIARLLPGRTDNAIKNHWNSTLRRRY 150 (462)
Q Consensus 124 skIAk~LPGRT~~QcKnRWnslLkkkl 150 (462)
+.||+.|||||+++|++||+.++++++
T Consensus 102 ~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 102 AEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999998753
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.6e-31 Score=234.25 Aligned_cols=105 Identities=40% Similarity=0.789 Sum_probs=100.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCch
Q 012494 44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKW 123 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkW 123 (462)
.+..+||+||+|||++|+++|.+||. +|..||+.|++|+++||++||.++|+|.+++++||.|||++|++++.+||++|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 46789999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHhh
Q 012494 124 AVIARLLPGRTDNAIKNHWNSTLRRR 149 (462)
Q Consensus 124 skIAk~LPGRT~~QcKnRWnslLkkk 149 (462)
+.||+.|||||+++|++||+.++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988764
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=9.4e-30 Score=230.05 Aligned_cols=107 Identities=54% Similarity=1.047 Sum_probs=101.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCch
Q 012494 44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKW 123 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkW 123 (462)
.+..++|+||+|||++|+++|.+||.++|..||+.|++|++.||+.||.++|+|.+++++||+|||.+|++++.+||++|
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W 132 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 132 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCH
Confidence 45678999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494 124 AVIARLLPGRTDNAIKNHWNSTLRRRY 150 (462)
Q Consensus 124 skIAk~LPGRT~~QcKnRWnslLkkkl 150 (462)
+.||+.|||||+++|++||+.++++++
T Consensus 133 ~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 133 AEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999998753
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.94 E-value=1.9e-28 Score=221.56 Aligned_cols=101 Identities=38% Similarity=0.716 Sum_probs=59.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCC-chHH
Q 012494 47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGN-KWAV 125 (462)
Q Consensus 47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~Gn-kWsk 125 (462)
..+++||+|||++|+++|.+||.++|..||+.|++|+++||++||.++|+|.+++++||+|||++|++++.+||. +|..
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~ 83 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV 83 (159)
T ss_dssp ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence 678999999999999999999988999999999999999999999999999999999999999999999999996 6999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHH
Q 012494 126 IARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 126 IAk~LPGRT~~QcKnRWnslLk 147 (462)
||..|||||+.||++||+++|.
T Consensus 84 Ia~~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 84 IAKHLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp HHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHcCCCCHHHHHHHHHHHhC
Confidence 9999999999999999998874
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.8e-21 Score=153.62 Aligned_cols=67 Identities=33% Similarity=0.669 Sum_probs=64.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHH
Q 012494 43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEED 109 (462)
Q Consensus 43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEED 109 (462)
.++..++|+||+|||++|+++|.+||.++|..||+.|++|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4567899999999999999999999988999999999999999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.79 E-value=6.6e-20 Score=160.37 Aligned_cols=73 Identities=33% Similarity=0.659 Sum_probs=49.8
Q ss_pred HhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 75 IARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGN-KWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 75 IAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
||+.|++|+++||+.||.++|+|.+++++||+|||++|++++.+||. +|..||..|||||+.||++||+++|.
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 78999999999999999999999999999999999999999999995 69999999999999999999998773
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.72 E-value=6.8e-18 Score=163.22 Aligned_cols=106 Identities=23% Similarity=0.318 Sum_probs=92.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----HHHHhhhCCCCCccccccccccccCCCCC------------------
Q 012494 44 SSSRVKGPWSPEEDAVLSRLVSQFGARN-----WGMIARGIPGRSGKSCRLRWCNQLDPCLK------------------ 100 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl~lV~kyG~~n-----WskIAk~LpgRS~kQCR~RW~n~L~P~lk------------------ 100 (462)
.+...|++||+|||++|+++|.+||.++ |..||+.|+|||+.|||.||.++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 4567899999999999999999998543 99999999999999999999999999986
Q ss_pred -----------CCCCChHHHHHHHHHHHH-c--------------------------------C----------------
Q 012494 101 -----------RKPFTDEEDQIIISAHAV-H--------------------------------G---------------- 120 (462)
Q Consensus 101 -----------rgpWTeEEDelLLeLvkk-~--------------------------------G---------------- 120 (462)
+..||.+||-.|+..+++ + +
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999998876 1 1
Q ss_pred ---------CchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 012494 121 ---------NKWAVIARLLPGRTDNAIKNHWNSTLRRR 149 (462)
Q Consensus 121 ---------nkWskIAk~LPGRT~~QcKnRWnslLkkk 149 (462)
..|..||+.+|+||.+++|+||+.+|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 16999999999999999999999988765
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.2e-17 Score=127.28 Aligned_cols=58 Identities=38% Similarity=0.692 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCC
Q 012494 43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLK 100 (462)
Q Consensus 43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lk 100 (462)
.++..++++||+|||++|+++|.+||.++|..||+.|++||..||++||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4678999999999999999999999988999999999999999999999999999875
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=1.4e-17 Score=146.78 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhC----CCCCccccccccccccC-----CCCCCC-CCChHHHH
Q 012494 41 GGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGI----PGRSGKSCRLRWCNQLD-----PCLKRK-PFTDEEDQ 110 (462)
Q Consensus 41 ~~~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~L----pgRS~kQCR~RW~n~L~-----P~lkrg-pWTeEEDe 110 (462)
+...+.+++++||+|||++|+++|.+||.++|..|++.+ ++||..+|++||+++|+ |.++++ +|+++|+.
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~ 88 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLD 88 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHH
Confidence 345678999999999999999999999988999999984 89999999999999998 999998 99999999
Q ss_pred HHHHHHHHcCCchHH
Q 012494 111 IIISAHAVHGNKWAV 125 (462)
Q Consensus 111 lLLeLvkk~GnkWsk 125 (462)
+|+.++..+||+|++
T Consensus 89 rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 89 RVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHccchhc
Confidence 999999999999986
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.65 E-value=1.1e-16 Score=141.26 Aligned_cols=80 Identities=18% Similarity=0.291 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhC----CCCCcccccccccccc-----CCCCCCCCCChHH-HHHH
Q 012494 43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGI----PGRSGKSCRLRWCNQL-----DPCLKRKPFTDEE-DQII 112 (462)
Q Consensus 43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~L----pgRS~kQCR~RW~n~L-----~P~lkrgpWTeEE-DelL 112 (462)
....+++++||+|||+.|+++|++||.++|..|++.+ ++||+.||++||+|++ +|.++++.|+++| +.+|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 4667899999999999999999999998999999863 8999999999999999 8999999999999 8999
Q ss_pred HHHHHHcCCc
Q 012494 113 ISAHAVHGNK 122 (462)
Q Consensus 113 LeLvkk~Gnk 122 (462)
++++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 14
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.65 E-value=5.8e-17 Score=131.34 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=46.8
Q ss_pred cccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 012494 87 CRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNST 145 (462)
Q Consensus 87 CR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnsl 145 (462)
..-||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||++|||+||+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999 99999999999864
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=1.1e-16 Score=120.22 Aligned_cols=52 Identities=48% Similarity=1.053 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCC
Q 012494 47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPC 98 (462)
Q Consensus 47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~ 98 (462)
++||+||+|||++|+++|.+||.++|..||+.|++||++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999878999999999999999999999999984
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.63 E-value=1.7e-16 Score=125.75 Aligned_cols=63 Identities=24% Similarity=0.322 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC--CCCccccccccccccCCCCCCCCCC
Q 012494 43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCNQLDPCLKRKPFT 105 (462)
Q Consensus 43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~Lp--gRS~kQCR~RW~n~L~P~lkrgpWT 105 (462)
..+.+++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 45678999999999999999999999889999999999 9999999999999999999988764
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=1.8e-16 Score=118.87 Aligned_cols=52 Identities=38% Similarity=0.734 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCC
Q 012494 47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPC 98 (462)
Q Consensus 47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~ 98 (462)
+++++||+|||++|+++|.+||.++|..||+.|++||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 3689999999999999999999879999999999999999999999999984
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=120.23 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=55.7
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHhhhhhc
Q 012494 94 QLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTDL 153 (462)
Q Consensus 94 ~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkkkl~~~ 153 (462)
+|+|.+++++||.|||++|++++++||++|.+||+ |+|||++||++||+.+|++.+...
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 79999999999999999999999999999999999 889999999999999998877643
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.59 E-value=2.4e-15 Score=120.24 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=55.1
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHhhhhh
Q 012494 95 LDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRYTD 152 (462)
Q Consensus 95 L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkkkl~~ 152 (462)
++|.+++++||+|||++|++++.+||++|..||++|||||++||++||+.+|+++...
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999887655
No 20
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=7e-16 Score=119.43 Aligned_cols=56 Identities=21% Similarity=0.387 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCC
Q 012494 43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPC 98 (462)
Q Consensus 43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~ 98 (462)
.++.+.+++||+|||++|+++|.+||.++|..||+.|++||++||+.||.++|.+.
T Consensus 2 ss~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 2 SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 45678999999999999999999999889999999999999999999999999865
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.58 E-value=5.4e-16 Score=122.29 Aligned_cols=57 Identities=23% Similarity=0.467 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC--CCCccccccccccccCCCCC
Q 012494 44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCNQLDPCLK 100 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~Lp--gRS~kQCR~RW~n~L~P~lk 100 (462)
....+|++||+|||++|+++|.+||.++|..||+.++ +||+.||++||+|+++|.++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 6 TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 3446789999999999999999999889999999865 99999999999999998764
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=4e-15 Score=114.63 Aligned_cols=54 Identities=24% Similarity=0.434 Sum_probs=50.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 012494 96 DPCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRR 149 (462)
Q Consensus 96 ~P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkk 149 (462)
+|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|+..
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 5788999999999999999999999 69999999999999999999999988654
No 23
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=113.54 Aligned_cols=55 Identities=27% Similarity=0.415 Sum_probs=50.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494 96 DPCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRRY 150 (462)
Q Consensus 96 ~P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkkl 150 (462)
.|.+++++||.|||++|+++|.+|| ++|..||..|+|||+.||++||+++|+..+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcc
Confidence 4678999999999999999999999 899999999999999999999999885543
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=5e-15 Score=111.76 Aligned_cols=49 Identities=27% Similarity=0.422 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC--CCCccccccccccccC
Q 012494 48 VKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP--GRSGKSCRLRWCNQLD 96 (462)
Q Consensus 48 kKG~WT~EEDelLl~lV~kyG~~nWskIAk~Lp--gRS~kQCR~RW~n~L~ 96 (462)
++|+||+|||++|+++|.+||.++|..||..|+ +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 579999999999999999999889999999999 9999999999999875
No 25
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.52 E-value=1.6e-14 Score=108.22 Aligned_cols=49 Identities=35% Similarity=0.639 Sum_probs=45.6
Q ss_pred CCCCCCChHHHHHHHHHHHHcCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 99 LKRKPFTDEEDQIIISAHAVHGN-KWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 99 lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
+++++||.|||++|++++.+||. +|..||+.|+|||+.||++||+++|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999997 99999999999999999999999985
No 26
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.1e-15 Score=119.30 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC-----CCHHHHhhhCCCCCccccccccccccCCCCCCCC
Q 012494 43 SSSSRVKGPWSPEEDAVLSRLVSQFGA-----RNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKP 103 (462)
Q Consensus 43 ~~~~~kKG~WT~EEDelLl~lV~kyG~-----~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgp 103 (462)
+++...+++||+|||++|+++|.+||. ++|..||++|++||..||+.||+++|.+.++.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999996 6899999999999999999999999998777654
No 27
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.50 E-value=9.5e-15 Score=112.59 Aligned_cols=51 Identities=25% Similarity=0.500 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC-CCCcccccccccccc
Q 012494 45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIP-GRSGKSCRLRWCNQL 95 (462)
Q Consensus 45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~Lp-gRS~kQCR~RW~n~L 95 (462)
....+++||+|||++|+++|.+||.++|..||+.|+ +||++||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999889999999999 999999999999875
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.50 E-value=3.4e-14 Score=112.55 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=53.8
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC--CCCHHHHHHHHHHHHHhhhhh
Q 012494 94 QLDPCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP--GRTDNAIKNHWNSTLRRRYTD 152 (462)
Q Consensus 94 ~L~P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LP--GRT~~QcKnRWnslLkkkl~~ 152 (462)
..++..++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||+++|+..+.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 456677899999999999999999999 79999999999 999999999999999886644
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.50 E-value=2.8e-14 Score=107.66 Aligned_cols=50 Identities=26% Similarity=0.428 Sum_probs=46.5
Q ss_pred CCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC--CCCHHHHHHHHHHHHHhh
Q 012494 100 KRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP--GRTDNAIKNHWNSTLRRR 149 (462)
Q Consensus 100 krgpWTeEEDelLLeLvkk~G-nkWskIAk~LP--GRT~~QcKnRWnslLkkk 149 (462)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 478999999999999999999 79999999999 999999999999998753
No 30
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.49 E-value=2.8e-14 Score=106.96 Aligned_cols=49 Identities=37% Similarity=0.694 Sum_probs=46.2
Q ss_pred CCCCCCChHHHHHHHHHHHHcCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 99 LKRKPFTDEEDQIIISAHAVHGN-KWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 99 lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
+++++||+|||++|++++.+||. +|..||+.|+|||+.||++||+++|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999997 69999999999999999999999884
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=3.8e-14 Score=109.69 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=48.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 96 DPCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 96 ~P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
.+.+.+++||+|||++|++++.+|| ++|.+||+.|+|||+.||++||+++|.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3568899999999999999999999 899999999999999999999999884
No 32
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.1e-15 Score=116.72 Aligned_cols=57 Identities=33% Similarity=0.492 Sum_probs=52.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCC
Q 012494 44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRK 102 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrg 102 (462)
+|..++++||+|||++|+++|..||. +|..||+ +++||++||++||.++|+|.++++
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 46789999999999999999999996 8999999 889999999999999999876654
No 33
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.45 E-value=2.1e-14 Score=114.72 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCC
Q 012494 42 GSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKR 101 (462)
Q Consensus 42 ~~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkr 101 (462)
..++..++++||+|||++|+++|.+||. +|..||++|++||..||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999996 8999999999999999999999999876655
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8.2e-14 Score=111.73 Aligned_cols=56 Identities=16% Similarity=0.152 Sum_probs=51.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcC------CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 012494 96 DPCLKRKPFTDEEDQIIISAHAVHG------NKWAVIARLLPGRTDNAIKNHWNSTLRRRYT 151 (462)
Q Consensus 96 ~P~lkrgpWTeEEDelLLeLvkk~G------nkWskIAk~LPGRT~~QcKnRWnslLkkkl~ 151 (462)
+|.+.+++||.|||++|++++.+|| ++|..||.+|+|||+.||++||+++|++...
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999 7899999999999999999999999977543
No 35
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.43 E-value=7e-14 Score=120.47 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=68.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhC----CCCCcccccccccccc-----CCCCCCCCCChHHH
Q 012494 39 GGGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGI----PGRSGKSCRLRWCNQL-----DPCLKRKPFTDEED 109 (462)
Q Consensus 39 ~s~~~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~L----pgRS~kQCR~RW~n~L-----~P~lkrgpWTeEED 109 (462)
+.......+++++||+|||++|+++|.+||.++|..|++.+ ++||..+|++||++++ +|.++++.-+++|-
T Consensus 3 ~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~ 82 (105)
T 2aje_A 3 HMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQEL 82 (105)
T ss_dssp ------CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHH
T ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHH
Confidence 44555778999999999999999999999998999999965 8999999999999988 68898888777776
Q ss_pred HH-HHHHHHHcCC
Q 012494 110 QI-IISAHAVHGN 121 (462)
Q Consensus 110 el-LLeLvkk~Gn 121 (462)
.. +++|+..+++
T Consensus 83 l~rv~~~~~~~~~ 95 (105)
T 2aje_A 83 LNRVLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 55 8888876553
No 36
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.42 E-value=2.1e-13 Score=107.40 Aligned_cols=51 Identities=29% Similarity=0.517 Sum_probs=46.4
Q ss_pred CCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC--CCCHHHHHHHHHHHHHhh
Q 012494 99 LKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP--GRTDNAIKNHWNSTLRRR 149 (462)
Q Consensus 99 lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LP--GRT~~QcKnRWnslLkkk 149 (462)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||+++++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4688999999999999999999 68999999866 999999999999998764
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.41 E-value=2.9e-13 Score=104.26 Aligned_cols=50 Identities=24% Similarity=0.415 Sum_probs=46.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHcC-CchHHHhhhCC-CCCHHHHHHHHHHHH
Q 012494 97 PCLKRKPFTDEEDQIIISAHAVHG-NKWAVIARLLP-GRTDNAIKNHWNSTL 146 (462)
Q Consensus 97 P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk~LP-GRT~~QcKnRWnslL 146 (462)
..+.+++||+|||++|++++.+|| ++|..||++|+ +||+.||++||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999998875
No 38
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.09 E-value=3e-14 Score=118.70 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=53.9
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494 93 NQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRY 150 (462)
Q Consensus 93 n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkkkl 150 (462)
..++|.+++++||.|||++|++++.+||++|..||..|+|||++||++||+.+|++.-
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3567889999999999999999999999999999999999999999999999997743
No 39
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=5.1e-13 Score=109.41 Aligned_cols=53 Identities=15% Similarity=0.431 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccc
Q 012494 41 GGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQ 94 (462)
Q Consensus 41 ~~~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~ 94 (462)
........+++||+|||++|+++|.+|| ++|..||++|++||..||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3345667789999999999999999999 7999999999999999999999988
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=7e-13 Score=109.76 Aligned_cols=69 Identities=22% Similarity=0.382 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHhhh----CCCCCcccccccccccc-----CCCCCC-CCCChHHHHHHHHHHHH
Q 012494 50 GPWSPEEDAVLSRLVSQFGARNWGMIARG----IPGRSGKSCRLRWCNQL-----DPCLKR-KPFTDEEDQIIISAHAV 118 (462)
Q Consensus 50 G~WT~EEDelLl~lV~kyG~~nWskIAk~----LpgRS~kQCR~RW~n~L-----~P~lkr-gpWTeEEDelLLeLvkk 118 (462)
++||+|||++|+++|++||.++|..|++. |++||+.+|++||+|+| +|.+++ .+...+...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999995 89999999999999988 676555 47778888899988864
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.31 E-value=6.6e-13 Score=116.69 Aligned_cols=82 Identities=27% Similarity=0.501 Sum_probs=60.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCch
Q 012494 44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKW 123 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkW 123 (462)
.+..++|+||+|||++|+.+|.+|| .+|..||+.|+|||..||+.||.++|++.+..++|+.+- +........+|
T Consensus 49 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~ 123 (131)
T 3zqc_A 49 DPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKA 123 (131)
T ss_dssp STTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC-----
T ss_pred CccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhh
Confidence 3567899999999999999999999 479999999999999999999999999999999988763 11112234568
Q ss_pred HHHhhhC
Q 012494 124 AVIARLL 130 (462)
Q Consensus 124 skIAk~L 130 (462)
+.|++.|
T Consensus 124 ~~i~k~~ 130 (131)
T 3zqc_A 124 ADVPKKL 130 (131)
T ss_dssp -------
T ss_pred hhcchhc
Confidence 8888766
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=106.20 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=47.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCCC
Q 012494 44 SSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCLK 100 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~lk 100 (462)
.|..++|+||+|||++|+++|.+||. +|..||+.| |||+.||+.||. .|....+
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~-~L~~~~~ 71 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCR-LMKDTCN 71 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHH-HCSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHH-HHHHHcc
Confidence 57899999999999999999999996 599999999 999999999997 4554443
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.29 E-value=3.2e-12 Score=103.52 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=47.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHcC----CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 97 PCLKRKPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 97 P~lkrgpWTeEEDelLLeLvkk~G----nkWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
+...+++||.+||++|++++.+|| ++|.+||++|||||.+||++||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 446788999999999999999999 689999999999999999999998874
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.25 E-value=3.3e-12 Score=104.63 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=44.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 012494 98 CLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNST 145 (462)
Q Consensus 98 ~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnsl 145 (462)
...+++||+|||++|++++.+||++|.+||++|++||+.||++||+.+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 356789999999999999999999999999999999999999999765
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.25 E-value=2.6e-12 Score=104.01 Aligned_cols=53 Identities=23% Similarity=0.549 Sum_probs=47.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHhhhCCCCCccccccccccccC
Q 012494 44 SSSRVKGPWSPEEDAVLSRLVSQFG---ARNWGMIARGIPGRSGKSCRLRWCNQLD 96 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl~lV~kyG---~~nWskIAk~LpgRS~kQCR~RW~n~L~ 96 (462)
.+...+++||++||++|++++.+|| ..+|.+||++|||||.+||+.||.+++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999 3579999999999999999999988765
No 46
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.24 E-value=9.6e-12 Score=108.73 Aligned_cols=52 Identities=33% Similarity=0.634 Sum_probs=48.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 96 DPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 96 ~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
.+..++++||+|||++|++++.+||.+|..||..|+|||..||+.||+++|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence 4567899999999999999999999999999999999999999999999883
No 47
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.87 E-value=8.4e-13 Score=109.94 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCC
Q 012494 40 GGGSSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDP 97 (462)
Q Consensus 40 s~~~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P 97 (462)
.....+...+|+||+|||++|+++|.+||. +|..||+.|++||..||+.||.++|..
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 345577899999999999999999999996 899999999999999999999998863
No 48
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.22 E-value=1.1e-11 Score=104.44 Aligned_cols=48 Identities=38% Similarity=0.708 Sum_probs=45.8
Q ss_pred CCCCCCChHHHHHHHHHHHHcCC-chHHHhhhCCCCCHHHHHHHHHHHH
Q 012494 99 LKRKPFTDEEDQIIISAHAVHGN-KWAVIARLLPGRTDNAIKNHWNSTL 146 (462)
Q Consensus 99 lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~LPGRT~~QcKnRWnslL 146 (462)
+++++||+|||++|+++|.+||. +|..||..|||||+.||++||..+|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 67899999999999999999996 7999999999999999999999877
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.16 E-value=3.8e-11 Score=99.40 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=46.1
Q ss_pred CCCChHHHHHHHHHHHHcCC-chHHHhhh----CCCCCHHHHHHHHHHHHHhhhh
Q 012494 102 KPFTDEEDQIIISAHAVHGN-KWAVIARL----LPGRTDNAIKNHWNSTLRRRYT 151 (462)
Q Consensus 102 gpWTeEEDelLLeLvkk~Gn-kWskIAk~----LPGRT~~QcKnRWnslLkkkl~ 151 (462)
.+||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++....
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 48999999999999999996 99999996 8999999999999999987653
No 50
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.13 E-value=4.9e-11 Score=101.38 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=44.4
Q ss_pred CCCCChHHHHHHHHHHHHcCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 101 RKPFTDEEDQIIISAHAVHGN-KWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 101 rgpWTeEEDelLLeLvkk~Gn-kWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
+++||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHc
Confidence 578999999999999999995 89999999999999999999999884
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.12 E-value=8.6e-11 Score=103.58 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=51.3
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHcCC-chHHHhhh----CCCCCHHHHHHHHHHHHHhhh
Q 012494 94 QLDPCLKRKPFTDEEDQIIISAHAVHGN-KWAVIARL----LPGRTDNAIKNHWNSTLRRRY 150 (462)
Q Consensus 94 ~L~P~lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~----LPGRT~~QcKnRWnslLkkkl 150 (462)
-+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 3556778999999999999999999996 99999997 489999999999999998644
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.12 E-value=3.2e-11 Score=116.84 Aligned_cols=55 Identities=27% Similarity=0.547 Sum_probs=48.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHcCCc------hHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 012494 97 PCLKRKPFTDEEDQIIISAHAVHGNK------WAVIARLLPGRTDNAIKNHWNSTLRRRYT 151 (462)
Q Consensus 97 P~lkrgpWTeEEDelLLeLvkk~Gnk------WskIAk~LPGRT~~QcKnRWnslLkkkl~ 151 (462)
+.+++++||+|||++|+++|+++|++ |..||++|||||++|||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999985 99999999999999999999999999865
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.11 E-value=1e-10 Score=100.80 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=48.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHcCC-chHHHhhhC----CCCCHHHHHHHHHHHHHhhh
Q 012494 97 PCLKRKPFTDEEDQIIISAHAVHGN-KWAVIARLL----PGRTDNAIKNHWNSTLRRRY 150 (462)
Q Consensus 97 P~lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~L----PGRT~~QcKnRWnslLkkkl 150 (462)
+..++++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++...
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999996 999999965 89999999999999997644
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.11 E-value=7.6e-11 Score=92.91 Aligned_cols=50 Identities=24% Similarity=0.416 Sum_probs=46.3
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCchHHHh---hhCCCCCHHHHHHHHHHHHHh
Q 012494 99 LKRKPFTDEEDQIIISAHAVHGNKWAVIA---RLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 99 lkrgpWTeEEDelLLeLvkk~GnkWskIA---k~LPGRT~~QcKnRWnslLkk 148 (462)
.++.+||+|||+.|+++|++||.+|+.|+ .++++||..++|+||+++.++
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 578999999999999998865
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.09 E-value=1.3e-10 Score=98.02 Aligned_cols=50 Identities=28% Similarity=0.549 Sum_probs=45.8
Q ss_pred CCCCCChHHHHHHHHHHHHcC----CchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 012494 100 KRKPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHWNSTLRRR 149 (462)
Q Consensus 100 krgpWTeEEDelLLeLvkk~G----nkWskIAk~LPGRT~~QcKnRWnslLkkk 149 (462)
..++||.|||++|++++.+|| ++|.+||+.|||||.++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 78999999999999999999999988664
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.04 E-value=3.6e-10 Score=99.71 Aligned_cols=55 Identities=22% Similarity=0.394 Sum_probs=49.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHcCC-chHHHhhh----CCCCCHHHHHHHHHHHHHhhhh
Q 012494 97 PCLKRKPFTDEEDQIIISAHAVHGN-KWAVIARL----LPGRTDNAIKNHWNSTLRRRYT 151 (462)
Q Consensus 97 P~lkrgpWTeEEDelLLeLvkk~Gn-kWskIAk~----LPGRT~~QcKnRWnslLkkkl~ 151 (462)
...++++||.|||+.|+++|.+||. +|+.|++. |++||+.+||+||+++++....
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~ 86 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI 86 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 3457899999999999999999996 99999996 4899999999999999987543
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.95 E-value=1.8e-10 Score=97.15 Aligned_cols=48 Identities=21% Similarity=0.547 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCHHHHhhhCCCCCcccccccccccc
Q 012494 48 VKGPWSPEEDAVLSRLVSQFG---ARNWGMIARGIPGRSGKSCRLRWCNQL 95 (462)
Q Consensus 48 kKG~WT~EEDelLl~lV~kyG---~~nWskIAk~LpgRS~kQCR~RW~n~L 95 (462)
.+++||+|||++|++++.+|+ .++|.+||+.|||||.+||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467899999999999999997 457999999999999999999998764
No 58
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.86 E-value=1.4e-09 Score=85.74 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHh---hhCCCCCccccccccccccC
Q 012494 45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIA---RGIPGRSGKSCRLRWCNQLD 96 (462)
Q Consensus 45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIA---k~LpgRS~kQCR~RW~n~L~ 96 (462)
..+.+.+||+|||+.|++.|++||. +|+.|+ .++++||...+++||++...
T Consensus 4 ~~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 4 GSSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 3468899999999999999999996 999999 46789999999999988654
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=3.1e-09 Score=82.57 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=44.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 100 krgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
...+||+||++++++++.+||.+|..||..||+||..||.++|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.7e-09 Score=82.91 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=44.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccccccccc
Q 012494 45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQL 95 (462)
Q Consensus 45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L 95 (462)
.....++||+||++++.+++.+|| ++|..||..|++||..||..+|....
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 335678999999999999999999 68999999999999999999986543
No 61
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.77 E-value=9.2e-09 Score=86.96 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=58.4
Q ss_pred cccccccccccCCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhC-----CCCCHHHHHHHHHHHHHhhhhhc
Q 012494 85 KSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLL-----PGRTDNAIKNHWNSTLRRRYTDL 153 (462)
Q Consensus 85 kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~L-----PGRT~~QcKnRWnslLkkkl~~~ 153 (462)
.=+.++|.++|.+ .+||.||+..|++|+++|+.+|..|+..+ ++||..++|+||..+.++.+...
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4577899999976 89999999999999999999999999999 58999999999999888766544
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.76 E-value=1.1e-08 Score=82.61 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=46.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHcC----CchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494 98 CLKRKPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHWNSTLRRRY 150 (462)
Q Consensus 98 ~lkrgpWTeEEDelLLeLvkk~G----nkWskIAk~LPGRT~~QcKnRWnslLkkkl 150 (462)
..+.+.||.||+++|.+++.+|+ ++|.+||..| |||..+|++||+.++....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~ 60 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT 60 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcC
Confidence 34678999999999999999997 6799999998 9999999999999876643
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.70 E-value=1.3e-08 Score=97.96 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=45.7
Q ss_pred CCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 100 krgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
...+||+||+.++++++.+||++|..||+.|++||..||+++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999987755
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.61 E-value=1.2e-08 Score=82.28 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=44.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHhhhCCCCCccccccccccccC
Q 012494 45 SSRVKGPWSPEEDAVLSRLVSQFG---ARNWGMIARGIPGRSGKSCRLRWCNQLD 96 (462)
Q Consensus 45 ~~~kKG~WT~EEDelLl~lV~kyG---~~nWskIAk~LpgRS~kQCR~RW~n~L~ 96 (462)
++...+.||.|||++|.+++.+|+ .+.|.+||..| |||..+|+.||..+.+
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 445577899999999999999997 35699999998 9999999999987654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.53 E-value=4.4e-08 Score=103.13 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=42.0
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHH
Q 012494 102 KPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTL 146 (462)
Q Consensus 102 gpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslL 146 (462)
..||.||..++++++.+||.+|..||..++.||..||+++|..+.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999997543
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.38 E-value=2.8e-07 Score=74.75 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=42.3
Q ss_pred CCCCChHHHHHHHHHHHHcC----CchHHHhhhCCCCCHHHHHHHHHHHH
Q 012494 101 RKPFTDEEDQIIISAHAVHG----NKWAVIARLLPGRTDNAIKNHWNSTL 146 (462)
Q Consensus 101 rgpWTeEEDelLLeLvkk~G----nkWskIAk~LPGRT~~QcKnRWnslL 146 (462)
...||.+|+++|.+++..|+ ++|.+||..+||||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998 46999999999999999999998764
No 67
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.32 E-value=3.1e-07 Score=88.57 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccC
Q 012494 45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLD 96 (462)
Q Consensus 45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~ 96 (462)
..+...+||+||++++++++.+|| ++|..||+.|++||..||+.+|.++..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 335678999999999999999999 689999999999999999999987764
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.28 E-value=7.4e-07 Score=72.28 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CCHHHHhhhCCCCCccccccccccccCC
Q 012494 50 GPWSPEEDAVLSRLVSQFGA---RNWGMIARGIPGRSGKSCRLRWCNQLDP 97 (462)
Q Consensus 50 G~WT~EEDelLl~lV~kyG~---~nWskIAk~LpgRS~kQCR~RW~n~L~P 97 (462)
..||.+|+++|.+++..|+. ++|.+||..|++||..+|+.||...+.-
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 56999999999999999974 4699999999999999999999877653
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.27 E-value=9.2e-07 Score=68.66 Aligned_cols=47 Identities=28% Similarity=0.514 Sum_probs=42.4
Q ss_pred CCCCChHHHHHHHHHHHHc--------CCc-hHHHhh-hCCCCCHHHHHHHHHHHHH
Q 012494 101 RKPFTDEEDQIIISAHAVH--------GNK-WAVIAR-LLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 101 rgpWTeEEDelLLeLvkk~--------Gnk-WskIAk-~LPGRT~~QcKnRWnslLk 147 (462)
+.+||.|||+.|++.+..| |++ |..+++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 8999999999999988763
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.27 E-value=2.9e-07 Score=71.45 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCHHHHhh-hCCCCCccccccccccccC
Q 012494 49 KGPWSPEEDAVLSRLVSQF--------GARNWGMIAR-GIPGRSGKSCRLRWCNQLD 96 (462)
Q Consensus 49 KG~WT~EEDelLl~lV~ky--------G~~nWskIAk-~LpgRS~kQCR~RW~n~L~ 96 (462)
|.+||+|||++|+++|.+| |..-|+.+++ .++++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 3334999999 7999999999999998874
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.16 E-value=4.7e-06 Score=83.45 Aligned_cols=100 Identities=16% Similarity=0.262 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccc-------ccccc----------------------------
Q 012494 50 GPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRL-------RWCNQ---------------------------- 94 (462)
Q Consensus 50 G~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~-------RW~n~---------------------------- 94 (462)
+.||..+...++.++.+||..+|..||..|.++|...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999999999999877643 22100
Q ss_pred ------------c---CCCCCCCCCChHHHHHHHHHHHHcCC----chHHHhh------------hCCCCCHHHHHHHHH
Q 012494 95 ------------L---DPCLKRKPFTDEEDQIIISAHAVHGN----KWAVIAR------------LLPGRTDNAIKNHWN 143 (462)
Q Consensus 95 ------------L---~P~lkrgpWTeEEDelLLeLvkk~Gn----kWskIAk------------~LPGRT~~QcKnRWn 143 (462)
| -+..+...||++||..||-++.+||- .|..|.. ++..||+.+|..|.+
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 0 02234578999999999999999984 6999972 456799999999999
Q ss_pred HHHHhh
Q 012494 144 STLRRR 149 (462)
Q Consensus 144 slLkkk 149 (462)
.+++-.
T Consensus 271 tLi~~i 276 (304)
T 1ofc_X 271 TLITLI 276 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998654
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=1.4e-05 Score=62.53 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=45.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHcCCchHHHhh-hCCCCCHHHHHHHHHHHH
Q 012494 97 PCLKRKPFTDEEDQIIISAHAVHGNKWAVIAR-LLPGRTDNAIKNHWNSTL 146 (462)
Q Consensus 97 P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk-~LPGRT~~QcKnRWnslL 146 (462)
|.+....||+||-.++.+++.+||.+|..|++ .|++||..+|...|+...
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 56778899999999999999999999999999 599999999999886533
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.81 E-value=4.8e-05 Score=64.14 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=43.2
Q ss_pred CCCChHHHHHHHHHHHHcCC---chHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 102 KPFTDEEDQIIISAHAVHGN---KWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 102 gpWTeEEDelLLeLvkk~Gn---kWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
--||.|||+.||..+++.|. .|+.||+.|.+|+.+|+++||+.+++-
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 46999999999999999986 799999999999999999999998753
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=1.6e-05 Score=62.07 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhh-hCCCCCcccccccccc
Q 012494 43 SSSSRVKGPWSPEEDAVLSRLVSQFGARNWGMIAR-GIPGRSGKSCRLRWCN 93 (462)
Q Consensus 43 ~~~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk-~LpgRS~kQCR~RW~n 93 (462)
+.|......||+||-++..+++.+||. +|..|++ .|++|+..+|...|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhc
Confidence 345667789999999999999999995 8999999 5899999999887754
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.75 E-value=4e-06 Score=68.15 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHhhhCCCCCccccccccc
Q 012494 49 KGPWSPEEDAVLSRLVSQFGA---RNWGMIARGIPGRSGKSCRLRWC 92 (462)
Q Consensus 49 KG~WT~EEDelLl~lV~kyG~---~nWskIAk~LpgRS~kQCR~RW~ 92 (462)
...||.+|+++|.+++.+|.. ..|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 446999999999999999974 36999999999999999999985
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.71 E-value=6.2e-06 Score=67.03 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHHHHcCC----chHHHhhhCCCCCHHHHHHHHH
Q 012494 101 RKPFTDEEDQIIISAHAVHGN----KWAVIARLLPGRTDNAIKNHWN 143 (462)
Q Consensus 101 rgpWTeEEDelLLeLvkk~Gn----kWskIAk~LPGRT~~QcKnRWn 143 (462)
...||.+|+++|.+++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999883
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.87 E-value=5.3e-06 Score=66.53 Aligned_cols=44 Identities=18% Similarity=0.420 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHcCC---chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 103 PFTDEEDQIIISAHAVHGN---KWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 103 pWTeEEDelLLeLvkk~Gn---kWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
-||.|||..||..+++-|. .|+.||..| +||++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 699999999 9999999999998774
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.59 E-value=0.00013 Score=61.66 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=46.3
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHhhhCC-----CCCHHHHHHHHHHHHHhhhhh
Q 012494 102 KPFTDEEDQIIISAHAVHGNKWAVIARLLP-----GRTDNAIKNHWNSTLRRRYTD 152 (462)
Q Consensus 102 gpWTeEEDelLLeLvkk~GnkWskIAk~LP-----GRT~~QcKnRWnslLkkkl~~ 152 (462)
..||.||...|++|+++|.-+|..|+..+. .||-.++|.||..+.++.+..
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999874 799999999999998776543
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.47 E-value=0.00021 Score=56.98 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=41.5
Q ss_pred CCCCCChHHHHHHHHHHHHcCCchHHHhh-hCCCCCHHHHHHHHHH
Q 012494 100 KRKPFTDEEDQIIISAHAVHGNKWAVIAR-LLPGRTDNAIKNHWNS 144 (462)
Q Consensus 100 krgpWTeEEDelLLeLvkk~GnkWskIAk-~LPGRT~~QcKnRWns 144 (462)
....||+||-.++.+++.+||.+|..|++ .|++||..+|...|+.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 34689999999999999999999999999 6999999999999874
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.45 E-value=0.00016 Score=60.69 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 012494 101 RKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNST 145 (462)
Q Consensus 101 rgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnsl 145 (462)
...||+||.+++.+.+..||.+|..||..||+||..+|-..|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988654
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.44 E-value=7.7e-05 Score=78.75 Aligned_cols=49 Identities=18% Similarity=0.380 Sum_probs=44.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccc
Q 012494 45 SSRVKGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQ 94 (462)
Q Consensus 45 ~~~kKG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~ 94 (462)
..+...+||.||-+++++++.+|| ++|..||+.|.+||..||+.+|.++
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345678999999999999999999 5999999999999999999988754
No 82
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.31 E-value=0.00023 Score=56.71 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHhh-hCCCCCcccccccccc
Q 012494 47 RVKGPWSPEEDAVLSRLVSQFGARNWGMIAR-GIPGRSGKSCRLRWCN 93 (462)
Q Consensus 47 ~kKG~WT~EEDelLl~lV~kyG~~nWskIAk-~LpgRS~kQCR~RW~n 93 (462)
.....||+||-++..+++.+||. +|..|++ .|++|+..+|...|..
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45668999999999999999995 8999999 5999999999887754
No 83
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.20 E-value=0.0013 Score=61.14 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC--CCCHHHHhhh--CCCCCccccccccc-------c----------------------
Q 012494 47 RVKGPWSPEEDAVLSRLVSQFG--ARNWGMIARG--IPGRSGKSCRLRWC-------N---------------------- 93 (462)
Q Consensus 47 ~kKG~WT~EEDelLl~lV~kyG--~~nWskIAk~--LpgRS~kQCR~RW~-------n---------------------- 93 (462)
-....||..|-..|++++.+|| ...|..|+.. |.+|+...+..-+. .
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 3456799999999999999999 5679999864 56777544332000 0
Q ss_pred ----------------------cc------------C--------CCCCCCCCChHHHHHHHHHHHHcC-CchHHHhh--
Q 012494 94 ----------------------QL------------D--------PCLKRKPFTDEEDQIIISAHAVHG-NKWAVIAR-- 128 (462)
Q Consensus 94 ----------------------~L------------~--------P~lkrgpWTeEEDelLLeLvkk~G-nkWskIAk-- 128 (462)
.| + +......||.+||..||..+.+|| ++|..|-.
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 00 0 001123699999999999999999 89999966
Q ss_pred hC------------CCCCHHHHHHHHHHHHHh
Q 012494 129 LL------------PGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 129 ~L------------PGRT~~QcKnRWnslLkk 148 (462)
.| ..++...+..|...+|+-
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 21 124567899998877753
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.16 E-value=0.00023 Score=59.80 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHhhhCCCCCcccccccccc
Q 012494 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCN 93 (462)
Q Consensus 49 KG~WT~EEDelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n 93 (462)
...||+||.+++.+++..|| ++|..||..|++||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45699999999999999999 589999999999999999887643
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.11 E-value=0.00036 Score=56.82 Aligned_cols=51 Identities=14% Similarity=0.402 Sum_probs=41.2
Q ss_pred CCCCChHHHHHHHHHHHHcCC----------chHHHhhhCC----CCCHHHHHHHHHHHHHhhhhh
Q 012494 101 RKPFTDEEDQIIISAHAVHGN----------KWAVIARLLP----GRTDNAIKNHWNSTLRRRYTD 152 (462)
Q Consensus 101 rgpWTeEEDelLLeLvkk~Gn----------kWskIAk~LP----GRT~~QcKnRWnslLkkkl~~ 152 (462)
...||.+|...||+++..+.. .|..||..|. .||+.||+++|.++.+. |..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~-Yk~ 68 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE-FKK 68 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHH
Confidence 468999999999999976322 4999999863 69999999999886654 544
No 86
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.11 E-value=0.00023 Score=60.19 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHhhhC-----CCCCcccccccccccc
Q 012494 50 GPWSPEEDAVLSRLVSQFGARNWGMIARGI-----PGRSGKSCRLRWCNQL 95 (462)
Q Consensus 50 G~WT~EEDelLl~lV~kyG~~nWskIAk~L-----pgRS~kQCR~RW~n~L 95 (462)
..||.||+..|++++++|+. .|..|+..+ ++||..+++.||..+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999996 799999998 4799999999997643
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.00 E-value=0.0021 Score=66.00 Aligned_cols=103 Identities=18% Similarity=0.304 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC-CCCcccccc-------cccc------c---------------------
Q 012494 50 GPWSPEEDAVLSRLVSQFGARNWGMIARGIP-GRSGKSCRL-------RWCN------Q--------------------- 94 (462)
Q Consensus 50 G~WT~EEDelLl~lV~kyG~~nWskIAk~Lp-gRS~kQCR~-------RW~n------~--------------------- 94 (462)
+.||.-+=..++.++.+||..+-..||..|. +++...++. ||.. +
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999989999999996 888766552 1111 0
Q ss_pred -------------c----CCC-CCCCCCChHHHHHHHHHHHHcC----CchHHHhhh------------CCCCCHHHHHH
Q 012494 95 -------------L----DPC-LKRKPFTDEEDQIIISAHAVHG----NKWAVIARL------------LPGRTDNAIKN 140 (462)
Q Consensus 95 -------------L----~P~-lkrgpWTeEEDelLLeLvkk~G----nkWskIAk~------------LPGRT~~QcKn 140 (462)
| .++ .+...||++||..||-++.+|| +.|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 011 1356899999999999999998 469999442 45799999999
Q ss_pred HHHHHHHhhhhh
Q 012494 141 HWNSTLRRRYTD 152 (462)
Q Consensus 141 RWnslLkkkl~~ 152 (462)
|.+.|++-.-+.
T Consensus 284 Rc~tLi~~IeKE 295 (374)
T 2y9y_A 284 RGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999765444
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.60 E-value=0.00047 Score=56.12 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC------CC---CHHHHhhhCC----CCCcccccccccccc
Q 012494 47 RVKGPWSPEEDAVLSRLVSQFG------AR---NWGMIARGIP----GRSGKSCRLRWCNQL 95 (462)
Q Consensus 47 ~kKG~WT~EEDelLl~lV~kyG------~~---nWskIAk~Lp----gRS~kQCR~RW~n~L 95 (462)
.+...||.+|-.+|+.+...+. .. -|..||..|. .||+.||+.+|.+..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4567899999999999997542 11 3999999873 699999999998754
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.21 E-value=0.00077 Score=54.11 Aligned_cols=46 Identities=13% Similarity=0.306 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCHHHHhhhCCCCCccccccccccccC
Q 012494 50 GPWSPEEDAVLSRLVSQFGA--RNWGMIARGIPGRSGKSCRLRWCNQLD 96 (462)
Q Consensus 50 G~WT~EEDelLl~lV~kyG~--~nWskIAk~LpgRS~kQCR~RW~n~L~ 96 (462)
-.||.|||..|+..+++-|. ..|..||+.| +|+..|+.+||+..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 35999999999999999985 3699999999 9999999999987654
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.09 E-value=0.0086 Score=50.57 Aligned_cols=45 Identities=18% Similarity=0.373 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCHHHHhhhCCCCCccccccccccc
Q 012494 50 GPWSPEEDAVLSRLVSQFGA--RNWGMIARGIPGRSGKSCRLRWCNQ 94 (462)
Q Consensus 50 G~WT~EEDelLl~lV~kyG~--~nWskIAk~LpgRS~kQCR~RW~n~ 94 (462)
-.||.|||..|+...++.|. ..|..||+.|.+|+..|+.+||+..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 36999999999999999984 4699999999999999999999763
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.29 E-value=0.051 Score=45.89 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHhhhCC-----CCCcccccccccccc
Q 012494 50 GPWSPEEDAVLSRLVSQFGARNWGMIARGIP-----GRSGKSCRLRWCNQL 95 (462)
Q Consensus 50 G~WT~EEDelLl~lV~kyG~~nWskIAk~Lp-----gRS~kQCR~RW~n~L 95 (462)
..||.||...|.+++++|.. .|-.|+.... .|+..+.++||..+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 46999999999999999996 6999998763 688888888887643
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.57 E-value=0.29 Score=38.68 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=40.5
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCc---hHHHhhhC--CCCCHHHHHHHHHHHH
Q 012494 99 LKRKPFTDEEDQIIISAHAVHGNK---WAVIARLL--PGRTDNAIKNHWNSTL 146 (462)
Q Consensus 99 lkrgpWTeEEDelLLeLvkk~Gnk---WskIAk~L--PGRT~~QcKnRWnslL 146 (462)
..+-.||+|..+.+++++.++|.. |..|.+.| +|.|..+|+.|.+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999965 78999875 6899999998876643
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.00 E-value=0.14 Score=40.41 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=39.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHhhhC--CCCCcccccccccc
Q 012494 44 SSSRVKGPWSPEEDAVLSRLVSQFGARN--WGMIARGI--PGRSGKSCRLRWCN 93 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl~lV~kyG~~n--WskIAk~L--pgRS~kQCR~RW~n 93 (462)
...+.+-.||+|..+.++++|.+.|... |+.|.+.| ++.|..++.-|.+.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3457788999999999999999999432 88998876 57777777665443
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.88 E-value=0.25 Score=49.54 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 012494 101 RKPFTDEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRRY 150 (462)
Q Consensus 101 rgpWTeEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkkl 150 (462)
.+.||..+...++.++.+|| ++|..||..|+|+|..+|+.++.... .++
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw-~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW-ERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH-HHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhH
Confidence 46899999999999999999 57999999999999999976554444 444
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.30 E-value=0.19 Score=49.53 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHhh
Q 012494 50 GPWSPEEDAVLSRLVSQFGARNWGMIAR 77 (462)
Q Consensus 50 G~WT~EEDelLl~lV~kyG~~nWskIAk 77 (462)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999975
No 96
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.12 E-value=0.38 Score=44.34 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=40.9
Q ss_pred CCCCCCChHHHHHHHHHHHHcC---CchHHHhh--hCCCCCHHHHHHHHHHHHHh
Q 012494 99 LKRKPFTDEEDQIIISAHAVHG---NKWAVIAR--LLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 99 lkrgpWTeEEDelLLeLvkk~G---nkWskIAk--~LPGRT~~QcKnRWnslLkk 148 (462)
-....||+.|-..|++++.+|| .+|..|+. .|.+||...++..+..++..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999 57999987 48899999999877665544
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.04 E-value=6.2 Score=38.79 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=42.3
Q ss_pred CCCCChHHHHHHHHHHHHcC---CchHHHhh--hCCCCCHHHHHHHHHHHHHh
Q 012494 101 RKPFTDEEDQIIISAHAVHG---NKWAVIAR--LLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 101 rgpWTeEEDelLLeLvkk~G---nkWskIAk--~LPGRT~~QcKnRWnslLkk 148 (462)
+++||+-|-..|++.+.+|| .+|..|+. .|+.++...++.-|+.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999987 68899999999988877643
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=64.35 E-value=11 Score=27.61 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 104 FTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 104 WTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
++ +.+..++.++...|-.+.+||..| |-+...|+.+....+++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44 455566666667788999999999 99999999887766544
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=64.33 E-value=11 Score=38.85 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=43.7
Q ss_pred CCCCChHHHHHHHHHHHHcC-CchHHHhhhCC-CCCHHHHHHHHHHHHHhhhhhc
Q 012494 101 RKPFTDEEDQIIISAHAVHG-NKWAVIARLLP-GRTDNAIKNHWNSTLRRRYTDL 153 (462)
Q Consensus 101 rgpWTeEEDelLLeLvkk~G-nkWskIAk~LP-GRT~~QcKnRWnslLkkkl~~~ 153 (462)
.+.||.-|=..++.+..+|| ++-..||..|. |+|..+|+ +|...+-.++...
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei 176 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERI 176 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSC
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhh
Confidence 35899999999999999999 56999999997 99999999 5666676666543
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=60.08 E-value=14 Score=27.89 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHH----cCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 107 EEDQIIISAHAV----HGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 107 EEDelLLeLvkk----~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
+.+..++.+.-. .|-.|.+||..| |-+...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 444555555554 567899999999 99999999988776644
No 101
>3r46_A Coiled coil helix L24D; coiled coil domain, parallel hexamer, KIH interactions, HYDR channel, synthetic biology, de novo protein; 1.75A {Synthetic} PDB: 3r48_A 3r47_A 3r3k_A* 3r48_B 3r4a_A
Probab=56.62 E-value=5.7 Score=27.28 Aligned_cols=18 Identities=44% Similarity=0.759 Sum_probs=15.7
Q ss_pred hhHHHHHHhhhhhHHHHh
Q 012494 369 SHELISIATDLNNIAWIK 386 (462)
Q Consensus 369 ~~~~~~~~~~~~~~aw~~ 386 (462)
-+||-+||.+|.-|||-.
T Consensus 8 aqelkaiakelkaiawed 25 (35)
T 3r46_A 8 AQELKAIAKELKAIAWED 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 378999999999999954
No 102
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=54.74 E-value=15 Score=27.30 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=30.6
Q ss_pred HHHHHHHHHHH----HcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 107 EEDQIIISAHA----VHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 107 EEDelLLeLvk----k~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
+.+..++.+.- ..|-.+.+||..| |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555554 3467899999999 99999999988776644
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=52.18 E-value=11 Score=31.93 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=29.2
Q ss_pred HHHHHHHHcCC--------chHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 111 IIISAHAVHGN--------KWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 111 lLLeLvkk~Gn--------kWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
.|..+|...|+ .|..||..|.--....++..|..+|-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILL 97 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 47777777775 69999998844447899999988883
No 104
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=50.85 E-value=17 Score=33.63 Aligned_cols=30 Identities=30% Similarity=0.647 Sum_probs=23.1
Q ss_pred CCCCCCCCCCHHHHHHHH--------HHHHHhCCCCHHHHh
Q 012494 44 SSSRVKGPWSPEEDAVLS--------RLVSQFGARNWGMIA 76 (462)
Q Consensus 44 ~~~~kKG~WT~EEDelLl--------~lV~kyG~~nWskIA 76 (462)
-|....|-||+|+|+.|. ++++||| |..|.
T Consensus 109 iP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp SCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 356789999999999874 6788888 45554
No 105
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=48.73 E-value=25 Score=29.09 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=27.5
Q ss_pred HHHHHHHHcCC--------chHHHhhhCCCCC----HHHHHHHHHHHHHh
Q 012494 111 IIISAHAVHGN--------KWAVIARLLPGRT----DNAIKNHWNSTLRR 148 (462)
Q Consensus 111 lLLeLvkk~Gn--------kWskIAk~LPGRT----~~QcKnRWnslLkk 148 (462)
.|..+|...|+ .|..||..|.--. ..++|..|..+|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46667777774 6999999983322 46789989888743
No 106
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=46.58 E-value=28 Score=27.34 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 107 EEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 107 EEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
+.+..++.++...|-.-.+||..| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345556666667788899999999 99999999888765543
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=45.92 E-value=16 Score=31.59 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=28.6
Q ss_pred HHHHHHHcCC--------chHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 112 IISAHAVHGN--------KWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 112 LLeLvkk~Gn--------kWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
|..+|...|+ .|..||..|.--....++..|..+|-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 6666666664 599999988444489999999998854
No 108
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=45.09 E-value=23 Score=30.15 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=27.7
Q ss_pred HHHHHHHHcCC--------chHHHhhhCCCCC----HHHHHHHHHHHHHh
Q 012494 111 IIISAHAVHGN--------KWAVIARLLPGRT----DNAIKNHWNSTLRR 148 (462)
Q Consensus 111 lLLeLvkk~Gn--------kWskIAk~LPGRT----~~QcKnRWnslLkk 148 (462)
+|..+|...|+ .|..||..|.--. ..++|..|..+|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777777775 6999999883322 56789989887743
No 109
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=42.81 E-value=29 Score=29.73 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=27.9
Q ss_pred HHHHHHHHcCC--------chHHHhhhCCCCC----HHHHHHHHHHHHHh
Q 012494 111 IIISAHAVHGN--------KWAVIARLLPGRT----DNAIKNHWNSTLRR 148 (462)
Q Consensus 111 lLLeLvkk~Gn--------kWskIAk~LPGRT----~~QcKnRWnslLkk 148 (462)
+|..+|...|+ .|.+||..|.--+ ..++|..|..+|-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777777775 6999999883322 46789999888854
No 110
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.52 E-value=30 Score=29.70 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=27.3
Q ss_pred HHHHHHHHcCC--------chHHHhhhCCCCC----HHHHHHHHHHHHHh
Q 012494 111 IIISAHAVHGN--------KWAVIARLLPGRT----DNAIKNHWNSTLRR 148 (462)
Q Consensus 111 lLLeLvkk~Gn--------kWskIAk~LPGRT----~~QcKnRWnslLkk 148 (462)
+|..+|...|+ .|.+|+..|.--. ...+|..|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777775 6999999883321 36788988888744
No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.51 E-value=48 Score=24.73 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 104 FTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 104 WTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
+|+.|-+ ++.++ ..|-...+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555544 44555 5677899999999 99999999988776644
No 112
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.61 E-value=48 Score=25.85 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHH----cCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 107 EEDQIIISAHAV----HGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 107 EEDelLLeLvkk----~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
+.+..++.+.-. .|-.+.+||..| |-|...|+.+....+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344455555544 567899999999 99999999987766644
No 113
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.43 E-value=54 Score=28.12 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=24.3
Q ss_pred HcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 118 VHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 118 k~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
..|-...+||..| |-+...|+++....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466799999999 99999999988776544
No 114
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.29 E-value=52 Score=24.02 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 102 KPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 102 gpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
..+|+.|-+.|.. + ..|....+||..| |-+...|+.+...++++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567776665554 4 5677899999999 99999999888775543
No 115
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.79 E-value=70 Score=25.50 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=34.6
Q ss_pred CCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 100 KRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 100 krgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+++...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34467887777665444 677889999999 99999999998887654
No 116
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.77 E-value=32 Score=30.01 Aligned_cols=44 Identities=11% Similarity=0.013 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 012494 107 EEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRRYT 151 (462)
Q Consensus 107 EEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkkl~ 151 (462)
+-|.+|+++..+.+ -.|.+||+.+ |-|...|+.|++.+....+.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 45778888887766 4699999999 99999999999988866553
No 117
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=33.94 E-value=47 Score=29.30 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=27.7
Q ss_pred HHHHHHHHcCC--------chHHHhhhCCC--C---CHHHHHHHHHHHHHh
Q 012494 111 IIISAHAVHGN--------KWAVIARLLPG--R---TDNAIKNHWNSTLRR 148 (462)
Q Consensus 111 lLLeLvkk~Gn--------kWskIAk~LPG--R---T~~QcKnRWnslLkk 148 (462)
+|..+|...|+ .|.+||..|.- . ....+|..|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46777777775 69999998832 1 256889999888843
No 118
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=33.90 E-value=61 Score=25.09 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 103 PFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 103 pWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
.+|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666665554 44 5677899999999 99999999988776544
No 119
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.89 E-value=67 Score=25.56 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 103 PFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 103 pWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655554 4 6777889999999 99999999988776544
No 120
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.73 E-value=15 Score=31.12 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC-------CCHHHHhhhCCCCCccccccccccccCC
Q 012494 59 VLSRLVSQFGA-------RNWGMIARGIPGRSGKSCRLRWCNQLDP 97 (462)
Q Consensus 59 lLl~lV~kyG~-------~nWskIAk~LpgRS~kQCR~RW~n~L~P 97 (462)
.|..+|.+.|. +.|..||..|.--.+...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 67888888872 4699999988333367777778777754
No 121
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=32.62 E-value=56 Score=24.23 Aligned_cols=34 Identities=12% Similarity=-0.031 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHH
Q 012494 106 DEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKN 140 (462)
Q Consensus 106 eEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKn 140 (462)
.-|.+.|.++...+++++++.|+.| |=+...+..
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 3477788899999999999999998 766654443
No 122
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=32.47 E-value=56 Score=28.02 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCC--------chHHHhhhCCC--C---CHHHHHHHHHHHHHh
Q 012494 110 QIIISAHAVHGN--------KWAVIARLLPG--R---TDNAIKNHWNSTLRR 148 (462)
Q Consensus 110 elLLeLvkk~Gn--------kWskIAk~LPG--R---T~~QcKnRWnslLkk 148 (462)
-+|..+|...|+ .|..||..|.- . ....+|..|..+|-.
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 357777777775 69999998832 2 257889999888854
No 123
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.05 E-value=72 Score=22.56 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 109 DQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 109 DelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
+..++.++ ..|-.-.+||..| |-+...++.+....+++
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34555663 5677789999999 99999999988776644
No 124
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=31.90 E-value=21 Score=28.99 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=24.9
Q ss_pred HHHHHHHHcCC--------chHHHhhhCCCC----CHHHHHHHHHHHHH
Q 012494 111 IIISAHAVHGN--------KWAVIARLLPGR----TDNAIKNHWNSTLR 147 (462)
Q Consensus 111 lLLeLvkk~Gn--------kWskIAk~LPGR----T~~QcKnRWnslLk 147 (462)
.|..+|...|+ .|.+|+..|.-- ...++|+.|..+|-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 36666666663 699999987321 24577888876663
No 125
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=31.41 E-value=69 Score=25.51 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHH
Q 012494 106 DEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHW 142 (462)
Q Consensus 106 eEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRW 142 (462)
.-|...|.+++..++++.++.|+.| |=+...+..+.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477888899999999999999999 88877665443
No 126
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=29.94 E-value=22 Score=30.74 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=36.0
Q ss_pred HHHHHHHHhC-------CCCHHHHhhhCCC-CC----ccccccccccccCCCCCCCCCChHHHHHHHHHHH
Q 012494 59 VLSRLVSQFG-------ARNWGMIARGIPG-RS----GKSCRLRWCNQLDPCLKRKPFTDEEDQIIISAHA 117 (462)
Q Consensus 59 lLl~lV~kyG-------~~nWskIAk~Lpg-RS----~kQCR~RW~n~L~P~lkrgpWTeEEDelLLeLvk 117 (462)
+|..+|.+.| .+.|..||..|.- .+ ....+..|.++|.|- .-++++|-..|.+-+.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 3445555554 1349999998821 22 245678888888753 2378888888876654
No 127
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=29.87 E-value=68 Score=26.64 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHH
Q 012494 105 TDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKN 140 (462)
Q Consensus 105 TeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKn 140 (462)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 67778888889999999999999999 777766533
No 128
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.13 E-value=91 Score=25.83 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 108 EDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 108 EDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
.+..++.++...|-...+||..| |-+...|+.+....++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 44556666667788899999999 9999999887766543
No 129
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.06 E-value=69 Score=26.29 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=23.7
Q ss_pred HcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 118 VHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 118 k~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
..|-...+||..| |-+...|+++....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3456799999999 99999998888665533
No 130
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.98 E-value=90 Score=26.32 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhhh
Q 012494 107 EEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRRYTD 152 (462)
Q Consensus 107 EEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkkl~~ 152 (462)
+-|..|+.+....+ -.|.+||+.+ |-+...|..+++.+.+..+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44567777776665 4699999999 899999999999988776553
No 131
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.90 E-value=80 Score=27.73 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=26.3
Q ss_pred HHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 112 IISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 112 LLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
++.++...|-...+||..| |-|...|+.+....+++
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3333334567899999999 99999998887665543
No 132
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=28.32 E-value=1.2e+02 Score=19.53 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHH
Q 012494 103 PFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHW 142 (462)
Q Consensus 103 pWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRW 142 (462)
..+.++-..++.++ ..|-...+||+.| |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677776777765 4577799999999 88888776543
No 133
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=27.86 E-value=31 Score=28.69 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=26.6
Q ss_pred HHHHHHHHcCC--------chHHHhhhCCC--C---CHHHHHHHHHHHHH
Q 012494 111 IIISAHAVHGN--------KWAVIARLLPG--R---TDNAIKNHWNSTLR 147 (462)
Q Consensus 111 lLLeLvkk~Gn--------kWskIAk~LPG--R---T~~QcKnRWnslLk 147 (462)
.|..+|...|+ .|.+||..|.- . ...+++..|..+|-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~ 86 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLIL 86 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 46667777774 69999998732 1 23678999988883
No 134
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.68 E-value=36 Score=29.05 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=24.2
Q ss_pred HcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 118 VHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 118 k~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
..|-.+.+||..| |-+...|+++....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4466789999999 99999999988776644
No 135
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=25.27 E-value=75 Score=24.79 Aligned_cols=43 Identities=23% Similarity=0.243 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 012494 103 PFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRR 148 (462)
Q Consensus 103 pWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLkk 148 (462)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45666665554 44 5677889999999 99999999988776544
No 136
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=24.57 E-value=72 Score=27.51 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=26.8
Q ss_pred HHHHHHHHcCC--------chHHHhhhCCC-C----CHHHHHHHHHHHHH
Q 012494 111 IIISAHAVHGN--------KWAVIARLLPG-R----TDNAIKNHWNSTLR 147 (462)
Q Consensus 111 lLLeLvkk~Gn--------kWskIAk~LPG-R----T~~QcKnRWnslLk 147 (462)
+|..+|.+.|+ .|..||..|.- . ....++++|..+|-
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 47777777875 69999998831 1 24678998988773
No 137
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.28 E-value=89 Score=27.59 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 012494 106 DEEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRRYT 151 (462)
Q Consensus 106 eEEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkkl~ 151 (462)
.+-|..|+.+....+ -.|.+||+.+ |-+...|..|++.+.+..+.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 455667777777766 4699999999 89999999999888766543
No 138
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=23.39 E-value=88 Score=26.59 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHH
Q 012494 102 KPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAI 138 (462)
Q Consensus 102 gpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~Qc 138 (462)
..=|.+ .|..++...|..|..+|+.| |=+..+|
T Consensus 20 ~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 20 SSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp SCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred CCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 334555 45566788999999999999 7666655
No 139
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=23.14 E-value=79 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCchHHHhhhCCCCCHHHHHH
Q 012494 109 DQIIISAHAVHGNKWAVIARLLPGRTDNAIKN 140 (462)
Q Consensus 109 DelLLeLvkk~GnkWskIAk~LPGRT~~QcKn 140 (462)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 3567777788999999999999 777766533
No 140
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.41 E-value=1.2e+02 Score=25.77 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 012494 107 EEDQIIISAHAVHG-NKWAVIARLLPGRTDNAIKNHWNSTLRRRYT 151 (462)
Q Consensus 107 EEDelLLeLvkk~G-nkWskIAk~LPGRT~~QcKnRWnslLkkkl~ 151 (462)
+-|..|+.+....+ -.|.+||+.+ |-+...|..+++.+....+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 34566777776665 4799999999 99999999999988876554
No 141
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.41 E-value=83 Score=26.70 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=26.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHH
Q 012494 96 DPCLKRKPFTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAI 138 (462)
Q Consensus 96 ~P~lkrgpWTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~Qc 138 (462)
.+.+....=|.+ .|..++...|..|..+|+.| |=+..+|
T Consensus 14 ~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 14 PSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp --CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred CchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 333444444555 45556788999999999999 7666655
No 142
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=21.56 E-value=56 Score=28.85 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=27.4
Q ss_pred HHHhhhCCCCCccccccccccccCCCCCCCCCChHHHHHHHH
Q 012494 73 GMIARGIPGRSGKSCRLRWCNQLDPCLKRKPFTDEEDQIIIS 114 (462)
Q Consensus 73 skIAk~LpgRS~kQCR~RW~n~L~P~lkrgpWTeEEDelLLe 114 (462)
..||..+.|+|..+||..|. + ...||+||++.|.+
T Consensus 119 ~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 67888999999999998762 2 23699999988654
No 143
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.84 E-value=1.5e+02 Score=24.67 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHcCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 012494 104 FTDEEDQIIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLR 147 (462)
Q Consensus 104 WTeEEDelLLeLvkk~GnkWskIAk~LPGRT~~QcKnRWnslLk 147 (462)
+++.+ ..++.++...|-...+||..+ |-|...|+.+....++
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 44444 455566667788899999999 9999999988766553
No 144
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=20.73 E-value=75 Score=26.45 Aligned_cols=45 Identities=20% Similarity=0.432 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCCHHHHhhhCCCCCccccccccccccCCCC-------CCCCCChHHHHHHH
Q 012494 57 DAVLSRLVSQFGARNWGMIARGIPGRSGKSCRLRWCNQLDPCL-------KRKPFTDEEDQIII 113 (462)
Q Consensus 57 DelLl~lV~kyG~~nWskIAk~LpgRS~kQCR~RW~n~L~P~l-------krgpWTeEEDelLL 113 (462)
+.+|.++|..|| |..++..|.-|+- ..+|++ ++.+|-.+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~CF---------~~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNINCF---------KKDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSSST---------TSSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccccC---------CCCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999999 9999998854432 234544 35677766655543
No 145
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=20.43 E-value=50 Score=27.98 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCC-------CCHHHHhhhCCCCC----ccccccccccccC
Q 012494 58 AVLSRLVSQFGA-------RNWGMIARGIPGRS----GKSCRLRWCNQLD 96 (462)
Q Consensus 58 elLl~lV~kyG~-------~nWskIAk~LpgRS----~kQCR~RW~n~L~ 96 (462)
-+|..+|.+.|. +.|..|+..|.--. +.+.+..|.++|.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 468888888872 46999999883211 2345666666654
Done!