BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012495
         (462 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FPQ|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type D Light
           Chain
          Length = 444

 Score = 31.6 bits (70), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 283 SSFMGDFSTATGIATFTMMLLSQFV--FDKFGWGVAAKITPTVLLLTGVGFF-----SLL 335
           S FMGD ST      FT    +  V  F+   W V   ITP+VL+   +        SL 
Sbjct: 122 SPFMGDSSTPEDTFDFTRHTTNIAVEKFENGSWKVTNIITPSVLIFGPLPNILDYTASLT 181

Query: 336 LFGDPLGPALAKFGMTPLLA 355
           L G    P+   FG   +L 
Sbjct: 182 LQGQQSNPSFEGFGTLSILK 201


>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia
           Coli
 pdb|3ASU|B Chain B, Crystal Structure Of Serine Dehydrogenase From Escherichia
           Coli
 pdb|3ASV|A Chain A, The Closed Form Of Serine Dehydrogenase Complexed With
           Nadp+
 pdb|3ASV|B Chain B, The Closed Form Of Serine Dehydrogenase Complexed With
           Nadp+
 pdb|3ASV|C Chain C, The Closed Form Of Serine Dehydrogenase Complexed With
           Nadp+
 pdb|3ASV|D Chain D, The Closed Form Of Serine Dehydrogenase Complexed With
           Nadp+
 pdb|3ASV|E Chain E, The Closed Form Of Serine Dehydrogenase Complexed With
           Nadp+
 pdb|3ASV|F Chain F, The Closed Form Of Serine Dehydrogenase Complexed With
           Nadp+
          Length = 248

 Score = 28.5 bits (62), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 418 ILTFGSLANSTPYLGGDTFGDCSCMVRS 445
           I+  GS A S PY GG+ +G     VR 
Sbjct: 129 IINIGSTAGSWPYAGGNVYGATKAFVRQ 156


>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
 pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
          Length = 571

 Score = 28.5 bits (62), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 128 GSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDG 187
           G+++++     F N+ITT D+A     L   G +  LIF     K  S + K +G GV  
Sbjct: 384 GAILVNREGKRFVNEITTADKASAAI-LAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAP 442

Query: 188 WAVSL 192
            A SL
Sbjct: 443 TADSL 447


>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
           From Shewanella Frigidimarina
 pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
           From Shewanella Frigidimarina
          Length = 571

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 128 GSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDG 187
           G+++++     F N+ITT D+A     L   G +  LIF     K  S + K +G GV  
Sbjct: 384 GAILVNREGKRFVNEITTADKASAAI-LAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAP 442

Query: 188 WAVSL 192
            A SL
Sbjct: 443 TADSL 447


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,927,929
Number of Sequences: 62578
Number of extensions: 441259
Number of successful extensions: 1002
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 4
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)