Query 012495
Match_columns 462
No_of_seqs 152 out of 556
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03219 TLC: TLC ATP/ADP tran 100.0 3.5E-93 7.6E-98 741.7 48.6 449 1-451 32-489 (491)
2 TIGR00769 AAA ADP/ATP carrier 100.0 1.4E-92 3.1E-97 733.9 48.2 450 1-451 15-470 (472)
3 COG3202 ATP/ADP translocase [E 100.0 8.7E-91 1.9E-95 702.0 41.6 447 1-451 35-492 (509)
4 PRK11195 lysophospholipid tran 99.7 1.3E-13 2.9E-18 142.0 29.5 333 4-417 14-353 (393)
5 TIGR00900 2A0121 H+ Antiporter 99.6 2.4E-13 5.1E-18 136.4 29.1 269 4-320 10-283 (365)
6 PRK10054 putative transporter; 99.6 4.1E-13 8.9E-18 138.5 28.1 370 2-454 16-389 (395)
7 PRK03545 putative arabinose tr 99.6 2.2E-12 4.8E-17 132.3 32.0 248 10-316 26-273 (390)
8 PRK11902 ampG muropeptide tran 99.6 1.1E-11 2.4E-16 127.8 35.2 266 7-323 13-285 (402)
9 PRK11102 bicyclomycin/multidru 99.6 7.3E-12 1.6E-16 127.3 31.9 267 10-331 8-277 (377)
10 PRK15402 multidrug efflux syst 99.6 5.5E-12 1.2E-16 130.1 30.8 263 6-322 26-289 (406)
11 PF05977 MFS_3: Transmembrane 99.5 1.9E-11 4.2E-16 130.2 33.5 326 25-418 41-367 (524)
12 TIGR00902 2A0127 phenyl propri 99.5 4.8E-12 1E-16 129.7 27.6 336 2-414 13-353 (382)
13 PRK09874 drug efflux system pr 99.5 1.6E-11 3.5E-16 126.0 31.0 267 3-322 24-296 (408)
14 PRK11128 putative 3-phenylprop 99.5 3.7E-12 8E-17 130.5 26.0 336 2-414 13-353 (382)
15 TIGR00710 efflux_Bcr_CflA drug 99.5 1.3E-11 2.7E-16 125.4 28.6 263 6-322 18-280 (385)
16 PF07690 MFS_1: Major Facilita 99.5 4.2E-13 9E-18 134.1 17.3 271 3-323 6-282 (352)
17 TIGR00893 2A0114 d-galactonate 99.5 2.2E-11 4.7E-16 122.8 29.8 246 23-315 23-282 (399)
18 PRK10213 nepI ribonucleoside t 99.5 3E-11 6.6E-16 124.5 31.0 128 14-175 41-168 (394)
19 PRK10489 enterobactin exporter 99.5 1.8E-11 3.9E-16 126.8 27.2 262 6-318 30-293 (417)
20 TIGR00899 2A0120 sugar efflux 99.5 5.4E-11 1.2E-15 120.4 28.6 141 2-175 6-149 (375)
21 PRK10504 putative transporter; 99.5 1.8E-10 3.9E-15 121.1 33.1 352 2-421 19-416 (471)
22 COG2814 AraJ Arabinose efflux 99.5 5.7E-10 1.2E-14 113.5 34.5 365 3-452 23-391 (394)
23 PRK11646 multidrug resistance 99.4 1.3E-10 2.9E-15 120.0 30.5 140 3-175 20-159 (400)
24 PRK10473 multidrug efflux syst 99.4 7.9E-10 1.7E-14 113.3 35.2 261 6-322 16-277 (392)
25 KOG2615 Permease of the major 99.4 5.4E-12 1.2E-16 125.4 16.8 276 7-326 47-340 (451)
26 PRK11652 emrD multidrug resist 99.4 3.1E-10 6.7E-15 116.4 30.7 253 4-312 19-271 (394)
27 PRK15403 multidrug efflux syst 99.4 3E-10 6.4E-15 117.9 30.2 239 24-315 46-286 (413)
28 PRK03633 putative MFS family t 99.4 1.2E-09 2.7E-14 111.7 33.3 139 3-175 16-154 (381)
29 TIGR00891 2A0112 putative sial 99.4 7.2E-10 1.6E-14 113.0 31.1 135 7-175 26-160 (405)
30 PRK09528 lacY galactoside perm 99.4 4.6E-10 1E-14 116.4 30.0 277 2-322 19-300 (420)
31 TIGR00882 2A0105 oligosacchari 99.4 7.7E-10 1.7E-14 113.8 31.0 278 2-322 11-292 (396)
32 TIGR00901 2A0125 AmpG-related 99.4 4.5E-10 9.8E-15 113.5 28.0 253 24-322 18-283 (356)
33 PRK11551 putative 3-hydroxyphe 99.4 3E-09 6.4E-14 109.4 34.5 118 24-174 45-162 (406)
34 TIGR00890 2A0111 Oxalate/Forma 99.4 8.5E-10 1.8E-14 110.9 29.8 246 24-322 33-278 (377)
35 PRK10091 MFS transport protein 99.4 1E-09 2.2E-14 112.4 30.7 261 4-323 14-274 (382)
36 PRK12382 putative transporter; 99.4 3.7E-10 8E-15 115.8 27.5 147 4-175 26-172 (392)
37 PRK14995 methyl viologen resis 99.4 5.4E-10 1.2E-14 118.7 29.6 140 3-176 16-156 (495)
38 TIGR00711 efflux_EmrB drug res 99.4 3.8E-10 8.3E-15 118.6 27.3 139 3-175 12-150 (485)
39 TIGR00897 2A0118 polyol permea 99.4 4.8E-09 1E-13 108.2 34.8 266 5-318 25-291 (402)
40 PRK11010 ampG muropeptide tran 99.3 7.1E-09 1.5E-13 110.2 36.4 265 7-322 26-297 (491)
41 TIGR00889 2A0110 nucleoside tr 99.3 9.9E-10 2.1E-14 114.3 29.0 265 1-323 10-290 (418)
42 PRK06814 acylglycerophosphoeth 99.3 4.2E-10 9E-15 131.1 28.7 237 29-315 52-292 (1140)
43 PRK15011 sugar efflux transpor 99.3 2.6E-09 5.7E-14 109.9 31.4 140 3-175 25-167 (393)
44 TIGR00881 2A0104 phosphoglycer 99.3 3E-10 6.4E-15 114.4 23.7 242 24-312 25-280 (379)
45 TIGR00883 2A0106 metabolite-pr 99.3 2.4E-09 5.1E-14 108.4 30.4 240 44-322 49-293 (394)
46 TIGR00792 gph sugar (Glycoside 99.3 1.1E-09 2.5E-14 113.5 28.5 256 24-322 30-295 (437)
47 PRK12307 putative sialic acid 99.3 9.5E-09 2.1E-13 106.4 34.3 119 24-175 48-166 (426)
48 TIGR00886 2A0108 nitrite extru 99.3 1.8E-09 3.8E-14 109.1 28.1 279 5-322 13-299 (366)
49 cd06174 MFS The Major Facilita 99.3 2.2E-09 4.7E-14 106.6 28.3 241 3-322 9-250 (352)
50 PRK11043 putative transporter; 99.3 2.9E-09 6.4E-14 109.5 29.8 135 7-175 20-154 (401)
51 PRK08633 2-acyl-glycerophospho 99.3 2.7E-09 5.9E-14 124.2 32.8 254 31-322 49-307 (1146)
52 PRK05122 major facilitator sup 99.3 3.6E-09 7.8E-14 108.6 30.1 148 3-175 25-172 (399)
53 PRK09556 uhpT sugar phosphate 99.3 7E-09 1.5E-13 109.3 31.1 255 24-320 59-330 (467)
54 PRK10429 melibiose:sodium symp 99.3 5E-09 1.1E-13 110.7 30.0 255 28-323 41-305 (473)
55 PF03825 Nuc_H_symport: Nucleo 99.3 1.4E-08 3E-13 105.0 32.5 343 1-418 10-362 (400)
56 PRK03699 putative transporter; 99.3 1.1E-08 2.4E-13 105.2 30.8 256 10-322 24-279 (394)
57 PRK09952 shikimate transporter 99.3 1.5E-08 3.3E-13 105.9 32.1 110 42-175 76-185 (438)
58 PRK11663 regulatory protein Uh 99.2 1E-08 2.3E-13 107.0 29.7 119 24-175 53-171 (434)
59 PRK10133 L-fucose transporter; 99.2 1.2E-07 2.5E-12 99.4 36.8 283 2-322 35-333 (438)
60 PLN00028 nitrate transmembrane 99.2 5.2E-08 1.1E-12 103.1 34.6 131 9-174 52-182 (476)
61 PRK03893 putative sialic acid 99.2 9.1E-08 2E-12 101.2 35.6 138 4-175 31-168 (496)
62 TIGR00898 2A0119 cation transp 99.2 2.3E-08 5E-13 106.1 30.8 113 28-173 126-238 (505)
63 PF13347 MFS_2: MFS/sugar tran 99.2 1E-09 2.2E-14 114.3 19.8 336 28-421 36-385 (428)
64 TIGR00895 2A0115 benzoate tran 99.2 2.8E-09 6.2E-14 108.1 21.8 131 11-175 35-165 (398)
65 PRK09705 cynX putative cyanate 99.2 3.9E-08 8.4E-13 101.3 30.0 248 14-321 30-277 (393)
66 PRK15075 citrate-proton sympor 99.1 8.9E-08 1.9E-12 99.9 30.9 236 45-320 71-310 (434)
67 PRK10406 alpha-ketoglutarate t 99.1 2.3E-07 5E-12 96.7 34.0 242 42-322 75-317 (432)
68 TIGR00896 CynX cyanate transpo 99.1 4.5E-08 9.7E-13 99.0 27.1 251 11-320 18-269 (355)
69 PRK09669 putative symporter Ya 99.1 1.2E-07 2.6E-12 99.2 30.3 250 28-322 44-302 (444)
70 PRK11273 glpT sn-glycerol-3-ph 99.1 1.5E-07 3.2E-12 98.8 30.6 245 25-312 59-317 (452)
71 TIGR02718 sider_RhtX_FptX side 99.1 9E-07 1.9E-11 90.8 34.3 269 3-322 11-282 (390)
72 TIGR00885 fucP L-fucose:H+ sym 99.1 2.9E-07 6.3E-12 95.6 30.8 283 2-322 12-307 (410)
73 TIGR00903 2A0129 major facilit 99.1 4.4E-07 9.5E-12 92.9 31.5 200 24-274 21-221 (368)
74 PF01306 LacY_symp: LacY proto 99.0 8.1E-08 1.8E-12 98.8 25.1 271 2-326 16-301 (412)
75 PRK09848 glucuronide transport 99.0 2.2E-07 4.8E-12 97.3 28.9 333 25-420 40-388 (448)
76 PRK10642 proline/glycine betai 99.0 9.1E-07 2E-11 93.9 32.8 109 43-175 70-178 (490)
77 TIGR00924 yjdL_sub1_fam amino 99.0 3E-07 6.5E-12 97.4 27.7 139 4-175 21-165 (475)
78 TIGR02332 HpaX 4-hydroxyphenyl 99.0 1E-06 2.2E-11 91.4 29.8 119 24-175 38-156 (412)
79 TIGR01299 synapt_SV2 synaptic 99.0 2.9E-06 6.3E-11 94.1 34.9 118 24-174 197-314 (742)
80 PF11700 ATG22: Vacuole efflux 99.0 4.2E-06 9.1E-11 88.5 34.4 341 31-429 72-451 (477)
81 TIGR00894 2A0114euk Na(+)-depe 98.9 1.8E-07 3.9E-12 98.3 24.0 240 27-313 74-326 (465)
82 TIGR00712 glpT glycerol-3-phos 98.9 1.9E-06 4.1E-11 90.1 31.5 120 25-173 57-176 (438)
83 COG2211 MelB Na+/melibiose sym 98.9 1.2E-06 2.5E-11 91.3 27.9 322 45-423 63-399 (467)
84 TIGR00892 2A0113 monocarboxyla 98.9 4.8E-07 1E-11 95.2 24.8 118 24-175 49-167 (455)
85 PRK09584 tppB putative tripept 98.9 4.1E-06 8.8E-11 89.3 31.0 142 3-176 31-175 (500)
86 PRK10077 xylE D-xylose transpo 98.9 9.2E-06 2E-10 85.4 33.4 129 25-174 51-179 (479)
87 PRK11462 putative transporter; 98.9 6.6E-06 1.4E-10 86.8 31.9 248 28-321 44-300 (460)
88 TIGR00879 SP MFS transporter, 98.9 1.6E-06 3.5E-11 89.9 26.8 114 28-171 70-183 (481)
89 PRK15034 nitrate/nitrite trans 98.8 7.4E-06 1.6E-10 86.0 30.6 258 24-327 65-329 (462)
90 TIGR00805 oat sodium-independe 98.8 3.9E-07 8.4E-12 99.8 20.3 298 10-323 50-408 (633)
91 PRK10207 dipeptide/tripeptide 98.8 5.8E-06 1.3E-10 87.9 28.1 139 6-176 27-168 (489)
92 KOG2816 Predicted transporter 98.8 2.7E-07 5.8E-12 96.9 17.4 301 42-423 74-395 (463)
93 KOG1330 Sugar transporter/spin 98.7 1.2E-07 2.5E-12 97.2 13.0 251 28-325 67-328 (493)
94 KOG3764 Vesicular amine transp 98.7 3.8E-07 8.3E-12 91.8 13.6 231 28-314 105-336 (464)
95 TIGR01301 GPH_sucrose GPH fami 98.6 1.9E-05 4.1E-10 83.4 26.6 151 7-174 18-175 (477)
96 COG2271 UhpC Sugar phosphate p 98.5 6.2E-05 1.3E-09 76.8 25.9 261 3-308 35-316 (448)
97 PF03209 PUCC: PUCC protein; 98.5 0.00047 1E-08 70.4 31.8 330 41-422 26-369 (403)
98 COG2223 NarK Nitrate/nitrite t 98.4 0.00034 7.4E-09 71.4 28.3 264 10-324 31-294 (417)
99 PRK15462 dipeptide/tripeptide 98.4 0.00047 1E-08 73.2 30.3 138 6-175 22-162 (493)
100 TIGR00788 fbt folate/biopterin 98.4 1.1E-05 2.3E-10 85.4 17.9 83 237-323 244-327 (468)
101 TIGR00806 rfc RFC reduced fola 98.4 0.00048 1E-08 72.2 29.4 137 4-174 30-173 (511)
102 TIGR00887 2A0109 phosphate:H+ 98.3 0.00071 1.5E-08 72.0 28.4 120 29-175 56-175 (502)
103 TIGR01272 gluP glucose/galacto 98.3 0.0012 2.6E-08 66.0 27.6 201 114-322 10-216 (310)
104 PF05631 DUF791: Protein of un 98.3 0.00046 9.9E-09 69.4 24.0 220 5-273 46-272 (354)
105 COG0738 FucP Fucose permease [ 98.2 0.011 2.3E-07 60.4 33.3 241 44-323 62-311 (422)
106 KOG2325 Predicted transporter/ 98.2 0.00034 7.4E-09 73.4 22.4 144 3-176 44-190 (488)
107 TIGR00880 2_A_01_02 Multidrug 98.2 7.5E-05 1.6E-09 63.5 14.3 102 42-175 10-111 (141)
108 KOG2533 Permease of the major 98.1 0.0005 1.1E-08 73.0 22.5 265 28-337 80-364 (495)
109 KOG2532 Permease of the major 98.0 0.003 6.5E-08 66.7 26.4 241 28-313 72-326 (466)
110 COG2270 Permeases of the major 98.0 0.0037 8E-08 64.1 24.9 276 9-324 40-328 (438)
111 TIGR01299 synapt_SV2 synaptic 97.9 0.0005 1.1E-08 76.5 18.4 103 41-175 606-708 (742)
112 KOG0569 Permease of the major 97.9 0.0062 1.3E-07 64.3 24.7 268 28-337 55-358 (485)
113 TIGR00792 gph sugar (Glycoside 97.8 0.0013 2.9E-08 68.1 18.7 118 28-177 256-380 (437)
114 PTZ00207 hypothetical protein; 97.8 0.0046 9.9E-08 67.1 22.3 115 28-171 61-175 (591)
115 PRK11551 putative 3-hydroxyphe 97.8 0.001 2.2E-08 68.3 16.6 118 25-175 251-368 (406)
116 KOG0255 Synaptic vesicle trans 97.7 0.0047 1E-07 66.0 21.9 102 41-175 129-230 (521)
117 cd06174 MFS The Major Facilita 97.7 0.00048 1E-08 68.1 12.4 136 7-175 189-325 (352)
118 PRK10489 enterobactin exporter 97.6 0.0012 2.6E-08 68.3 15.1 126 18-176 248-373 (417)
119 PRK09528 lacY galactoside perm 97.6 0.00064 1.4E-08 70.4 12.7 115 28-175 261-376 (420)
120 TIGR00899 2A0120 sugar efflux 97.6 0.0033 7.2E-08 63.4 16.7 120 22-175 228-347 (375)
121 PRK09556 uhpT sugar phosphate 97.6 0.0025 5.5E-08 67.1 16.4 130 16-176 281-411 (467)
122 PRK10504 putative transporter; 97.5 0.0044 9.6E-08 65.1 17.9 123 24-176 292-414 (471)
123 TIGR00883 2A0106 metabolite-pr 97.5 0.0011 2.5E-08 66.7 12.8 139 7-175 233-373 (394)
124 TIGR00895 2A0115 benzoate tran 97.5 0.0019 4E-08 65.3 14.1 117 24-173 280-396 (398)
125 TIGR00900 2A0121 H+ Antiporter 97.5 0.0019 4.2E-08 64.4 14.0 119 25-175 243-361 (365)
126 PRK10642 proline/glycine betai 97.5 0.0075 1.6E-07 64.0 19.2 138 7-175 264-402 (490)
127 PRK09848 glucuronide transport 97.5 0.012 2.7E-07 61.5 19.9 141 5-176 240-387 (448)
128 PRK09705 cynX putative cyanate 97.5 0.0053 1.1E-07 63.2 16.9 137 5-176 217-354 (393)
129 PRK05122 major facilitator sup 97.4 0.0084 1.8E-07 61.4 18.1 102 42-175 261-362 (399)
130 PRK11010 ampG muropeptide tran 97.4 0.018 4E-07 61.2 21.2 125 24-176 253-377 (491)
131 PRK09874 drug efflux system pr 97.4 0.002 4.4E-08 65.9 13.4 102 42-175 270-371 (408)
132 TIGR00890 2A0111 Oxalate/Forma 97.4 0.0026 5.7E-08 63.6 13.4 117 28-175 239-355 (377)
133 PRK03893 putative sialic acid 97.4 0.0026 5.7E-08 67.1 13.7 121 24-175 306-426 (496)
134 PRK09669 putative symporter Ya 97.4 0.016 3.4E-07 60.7 19.3 118 29-177 264-388 (444)
135 COG2211 MelB Na+/melibiose sym 97.4 0.01 2.3E-07 62.2 17.6 142 4-176 247-395 (467)
136 TIGR00891 2A0112 putative sial 97.3 0.0016 3.5E-08 66.1 11.4 121 24-176 269-389 (405)
137 PRK10429 melibiose:sodium symp 97.3 0.027 5.8E-07 59.5 20.4 122 28-177 265-393 (473)
138 PRK12307 putative sialic acid 97.3 0.0051 1.1E-07 63.5 14.6 120 25-175 262-381 (426)
139 PRK03699 putative transporter; 97.3 0.0093 2E-07 61.2 16.2 138 5-176 217-354 (394)
140 PRK15011 sugar efflux transpor 97.3 0.014 3E-07 60.0 17.4 113 28-175 251-364 (393)
141 TIGR00879 SP MFS transporter, 97.2 0.0052 1.1E-07 63.5 13.7 126 28-175 318-443 (481)
142 PRK03633 putative MFS family t 97.2 0.017 3.7E-07 58.9 16.7 116 24-175 230-345 (381)
143 KOG0254 Predicted transporter 97.2 0.077 1.7E-06 56.8 22.3 104 31-167 91-194 (513)
144 PF13347 MFS_2: MFS/sugar tran 97.1 0.0069 1.5E-07 63.0 13.8 118 29-177 260-384 (428)
145 TIGR00889 2A0110 nucleoside tr 97.1 0.027 5.8E-07 58.6 18.2 119 29-176 251-370 (418)
146 PRK09952 shikimate transporter 97.1 0.024 5.2E-07 59.3 17.9 106 42-175 298-404 (438)
147 TIGR00892 2A0113 monocarboxyla 97.1 0.0054 1.2E-07 64.5 13.1 117 28-175 275-393 (455)
148 PRK11902 ampG muropeptide tran 97.1 0.028 6E-07 57.8 18.0 51 24-74 240-290 (402)
149 TIGR00901 2A0125 AmpG-related 97.1 0.0047 1E-07 62.2 11.8 134 6-161 222-355 (356)
150 TIGR00893 2A0114 d-galactonate 97.1 0.01 2.2E-07 59.4 14.2 124 24-175 246-371 (399)
151 PRK10077 xylE D-xylose transpo 97.1 0.0095 2.1E-07 62.5 14.1 107 41-174 317-423 (479)
152 PRK12382 putative transporter; 97.0 0.031 6.8E-07 57.1 16.5 103 42-176 261-363 (392)
153 TIGR00711 efflux_EmrB drug res 97.0 0.013 2.7E-07 61.6 13.8 126 19-173 281-406 (485)
154 TIGR00898 2A0119 cation transp 96.9 0.023 4.9E-07 60.3 15.4 101 42-172 367-467 (505)
155 TIGR00902 2A0127 phenyl propri 96.9 0.023 5.1E-07 58.0 14.9 119 24-176 235-354 (382)
156 PRK03545 putative arabinose tr 96.9 0.018 3.9E-07 58.9 14.0 118 24-175 236-353 (390)
157 COG2807 CynX Cyanate permease 96.8 0.71 1.5E-05 46.9 24.9 258 13-337 36-294 (395)
158 TIGR02718 sider_RhtX_FptX side 96.8 0.032 6.9E-07 57.0 15.0 127 24-176 238-365 (390)
159 PF11700 ATG22: Vacuole efflux 96.8 0.05 1.1E-06 57.8 16.3 124 28-178 316-443 (477)
160 PF05977 MFS_3: Transmembrane 96.7 0.085 1.8E-06 56.7 18.0 127 17-176 242-368 (524)
161 PF07690 MFS_1: Major Facilita 96.7 0.0073 1.6E-07 59.9 9.2 131 8-168 221-352 (352)
162 PRK15402 multidrug efflux syst 96.7 0.09 2E-06 54.0 17.5 118 28-174 250-367 (406)
163 PF03092 BT1: BT1 family; Int 96.7 0.079 1.7E-06 55.5 16.9 264 24-324 20-295 (433)
164 PRK11646 multidrug resistance 96.7 0.07 1.5E-06 55.0 16.3 43 135-177 317-359 (400)
165 TIGR00897 2A0118 polyol permea 96.6 0.1 2.3E-06 53.6 17.5 122 24-175 252-374 (402)
166 TIGR00881 2A0104 phosphoglycer 96.6 0.021 4.6E-07 57.0 11.8 131 17-175 240-370 (379)
167 PF06609 TRI12: Fungal trichot 96.6 0.76 1.6E-05 50.0 24.1 51 22-74 72-122 (599)
168 KOG2504 Monocarboxylate transp 96.6 0.74 1.6E-05 49.3 23.9 118 24-175 76-194 (509)
169 PRK10406 alpha-ketoglutarate t 96.6 0.082 1.8E-06 55.0 16.4 125 9-162 259-383 (432)
170 PRK15075 citrate-proton sympor 96.5 0.12 2.6E-06 53.8 16.8 138 8-175 253-392 (434)
171 PRK11663 regulatory protein Uh 96.3 0.1 2.3E-06 54.3 15.3 40 136-175 358-397 (434)
172 PRK11273 glpT sn-glycerol-3-ph 96.3 0.15 3.3E-06 53.3 16.7 40 136-175 368-408 (452)
173 TIGR02332 HpaX 4-hydroxyphenyl 96.3 0.03 6.6E-07 58.0 11.0 41 135-175 353-393 (412)
174 PRK08633 2-acyl-glycerophospho 96.3 0.039 8.5E-07 64.6 13.0 124 18-174 257-381 (1146)
175 PRK09584 tppB putative tripept 96.3 0.36 7.8E-06 51.5 19.3 105 47-174 337-441 (500)
176 TIGR00896 CynX cyanate transpo 96.3 0.081 1.8E-06 53.2 13.6 135 7-176 211-347 (355)
177 PRK14995 methyl viologen resis 96.2 0.082 1.8E-06 56.2 13.7 117 25-171 291-407 (495)
178 PRK10207 dipeptide/tripeptide 96.1 0.41 9E-06 51.0 18.7 110 44-175 323-439 (489)
179 TIGR00882 2A0105 oligosacchari 96.1 0.064 1.4E-06 54.9 12.1 116 28-176 253-369 (396)
180 PF06963 FPN1: Ferroportin1 (F 96.0 2.4 5.2E-05 44.4 31.5 143 236-394 250-393 (432)
181 TIGR00710 efflux_Bcr_CflA drug 95.9 0.37 8E-06 48.5 16.7 120 24-172 237-356 (385)
182 PRK11128 putative 3-phenylprop 95.9 0.2 4.3E-06 51.1 14.5 117 24-175 235-353 (382)
183 PLN00028 nitrate transmembrane 95.8 0.084 1.8E-06 55.9 11.6 36 135-171 368-403 (476)
184 PRK06814 acylglycerophosphoeth 95.7 0.068 1.5E-06 62.8 11.4 152 11-175 243-394 (1140)
185 TIGR00788 fbt folate/biopterin 95.6 0.22 4.8E-06 52.7 13.9 131 23-177 282-413 (468)
186 KOG0252 Inorganic phosphate tr 95.6 0.38 8.2E-06 50.3 14.8 126 32-183 87-212 (538)
187 TIGR00886 2A0108 nitrite extru 95.5 0.026 5.6E-07 56.7 6.3 115 19-163 251-365 (366)
188 PRK10473 multidrug efflux syst 95.4 0.87 1.9E-05 46.3 17.1 53 24-77 234-286 (392)
189 TIGR00712 glpT glycerol-3-phos 95.3 0.27 5.8E-06 51.3 13.2 40 136-175 366-406 (438)
190 PRK10054 putative transporter; 95.1 0.22 4.7E-06 51.3 11.8 113 30-175 245-357 (395)
191 TIGR00924 yjdL_sub1_fam amino 95.0 1.8 3.8E-05 45.9 18.4 61 113-174 380-440 (475)
192 TIGR00887 2A0109 phosphate:H+ 94.9 0.18 3.8E-06 53.7 10.8 104 44-175 349-452 (502)
193 TIGR00894 2A0114euk Na(+)-depe 94.8 0.26 5.5E-06 51.7 11.6 143 4-174 272-419 (465)
194 PRK11195 lysophospholipid tran 94.8 1.5 3.3E-05 44.9 17.1 116 25-174 237-353 (393)
195 COG3104 PTR2 Dipeptide/tripept 94.8 3.7 8E-05 43.4 19.5 134 6-176 43-180 (498)
196 PRK11462 putative transporter; 94.7 1.7 3.7E-05 45.8 17.5 105 41-175 274-385 (460)
197 PRK10091 MFS transport protein 94.5 1.9 4.2E-05 43.8 16.9 51 24-75 230-280 (382)
198 KOG4686 Predicted sugar transp 94.4 0.9 2E-05 44.8 13.0 130 13-176 284-413 (459)
199 PF12832 MFS_1_like: MFS_1 lik 94.4 0.11 2.4E-06 40.7 5.6 65 2-68 9-73 (77)
200 PF05978 UNC-93: Ion channel r 94.4 1.5 3.4E-05 39.2 13.7 85 52-173 59-147 (156)
201 PRK11043 putative transporter; 94.3 2.1 4.5E-05 43.7 16.7 122 25-175 234-355 (401)
202 TIGR00903 2A0129 major facilit 94.3 0.63 1.4E-05 47.6 12.6 52 122-174 288-339 (368)
203 PRK15034 nitrate/nitrite trans 94.1 1.2 2.6E-05 47.1 14.5 32 42-73 298-329 (462)
204 PRK10213 nepI ribonucleoside t 94.1 1.2 2.6E-05 45.8 14.2 118 24-175 247-364 (394)
205 PRK11102 bicyclomycin/multidru 93.9 2.4 5.2E-05 42.6 15.9 45 24-69 225-269 (377)
206 KOG3626 Organic anion transpor 93.8 1.5 3.3E-05 48.5 14.8 190 135-330 257-477 (735)
207 KOG0569 Permease of the major 93.3 2.9 6.3E-05 44.4 15.6 119 28-173 304-426 (485)
208 COG2270 Permeases of the major 93.3 1.7 3.6E-05 45.1 13.3 116 31-179 290-405 (438)
209 COG2223 NarK Nitrate/nitrite t 93.2 0.77 1.7E-05 47.3 10.6 119 21-166 246-364 (417)
210 COG0477 ProP Permeases of the 92.9 2.1 4.5E-05 40.1 12.8 115 30-175 40-156 (338)
211 PRK11652 emrD multidrug resist 92.6 5.8 0.00013 40.3 16.6 120 24-174 238-357 (394)
212 PF03825 Nuc_H_symport: Nucleo 92.1 9.7 0.00021 39.5 17.4 116 29-175 243-362 (400)
213 PF03137 OATP: Organic Anion T 91.8 0.033 7.1E-07 60.1 -1.4 293 22-322 31-382 (539)
214 PF01770 Folate_carrier: Reduc 91.2 21 0.00045 37.2 30.8 136 4-176 8-154 (412)
215 PRK10133 L-fucose transporter; 91.1 7.4 0.00016 40.7 15.5 74 248-325 29-102 (438)
216 PF01306 LacY_symp: LacY proto 91.0 12 0.00026 39.0 16.5 114 28-175 258-373 (412)
217 PF00083 Sugar_tr: Sugar (and 90.9 0.0073 1.6E-07 62.9 -7.3 114 31-174 48-161 (451)
218 TIGR01272 gluP glucose/galacto 90.2 5.4 0.00012 39.6 12.9 113 28-176 177-289 (310)
219 KOG3098 Uncharacterized conser 89.2 33 0.00071 36.3 20.4 199 120-323 105-321 (461)
220 COG2814 AraJ Arabinose efflux 89.2 19 0.00042 37.2 16.1 129 7-175 229-359 (394)
221 KOG2504 Monocarboxylate transp 89.0 6.9 0.00015 42.0 13.4 120 25-175 329-448 (509)
222 TIGR00885 fucP L-fucose:H+ sym 88.9 11 0.00024 38.9 14.6 73 247-323 5-77 (410)
223 KOG3762 Predicted transporter 88.0 3.7 8E-05 43.9 10.1 97 42-174 418-523 (618)
224 PRK15403 multidrug efflux syst 84.8 51 0.0011 33.9 17.4 47 16-63 241-287 (413)
225 PTZ00207 hypothetical protein; 84.2 39 0.00084 37.0 16.0 63 267-336 48-110 (591)
226 KOG0255 Synaptic vesicle trans 82.7 18 0.00039 38.4 12.8 96 51-175 371-466 (521)
227 PF00083 Sugar_tr: Sugar (and 82.6 0.015 3.3E-07 60.5 -10.7 111 41-173 297-407 (451)
228 KOG0637 Sucrose transporter an 81.4 21 0.00046 37.6 11.9 120 31-167 69-195 (498)
229 KOG0254 Predicted transporter 79.8 15 0.00033 39.1 11.0 106 41-165 340-445 (513)
230 TIGR00806 rfc RFC reduced fola 78.6 69 0.0015 34.3 14.8 97 298-416 76-172 (511)
231 PF06813 Nodulin-like: Nodulin 77.5 71 0.0015 30.9 17.2 119 14-166 27-146 (250)
232 KOG2615 Permease of the major 76.3 51 0.0011 34.2 12.6 133 290-444 74-209 (451)
233 KOG3762 Predicted transporter 75.8 8 0.00017 41.5 7.0 156 240-421 366-523 (618)
234 KOG4332 Predicted sugar transp 74.4 95 0.0021 30.8 16.9 53 22-79 65-117 (454)
235 TIGR00926 2A1704 Peptide:H+ sy 74.0 1.5E+02 0.0033 32.9 22.5 107 45-176 38-149 (654)
236 KOG0253 Synaptic vesicle trans 73.7 1.2E+02 0.0026 31.6 20.3 44 28-72 112-155 (528)
237 PF02990 EMP70: Endomembrane p 73.3 1.4E+02 0.003 32.2 17.0 27 298-324 311-344 (521)
238 PF03092 BT1: BT1 family; Int 71.3 25 0.00053 36.8 9.6 128 28-178 254-381 (433)
239 COG2271 UhpC Sugar phosphate p 70.2 93 0.002 32.6 13.0 116 28-175 287-407 (448)
240 COG2807 CynX Cyanate permease 64.6 1.8E+02 0.0038 30.0 13.9 129 2-168 217-347 (395)
241 KOG0253 Synaptic vesicle trans 63.6 8 0.00017 39.8 3.7 96 44-171 395-490 (528)
242 PF05978 UNC-93: Ion channel r 63.6 62 0.0013 28.9 9.2 73 252-327 7-80 (156)
243 KOG3098 Uncharacterized conser 63.6 2.1E+02 0.0045 30.4 18.4 150 120-292 248-399 (461)
244 TIGR01301 GPH_sucrose GPH fami 58.4 2.6E+02 0.0055 29.8 16.1 122 41-173 316-440 (477)
245 TIGR00880 2_A_01_02 Multidrug 58.1 99 0.0021 25.0 11.0 69 253-322 57-125 (141)
246 KOG4686 Predicted sugar transp 57.3 2.2E+02 0.0047 28.7 13.2 178 136-323 157-339 (459)
247 PF00854 PTR2: POT family; In 55.5 59 0.0013 32.9 8.7 67 259-325 45-113 (372)
248 KOG2816 Predicted transporter 54.8 1E+02 0.0022 32.7 10.5 118 24-174 272-389 (463)
249 KOG1278 Endosomal membrane pro 51.2 42 0.00091 36.0 6.7 41 356-400 449-489 (628)
250 KOG2563 Permease of the major 47.9 3.7E+02 0.008 28.6 23.8 39 29-68 79-117 (480)
251 PRK15462 dipeptide/tripeptide 44.3 4.3E+02 0.0093 28.3 17.1 74 247-323 11-85 (493)
252 PF02487 CLN3: CLN3 protein; 33.4 1.6E+02 0.0035 30.6 7.7 60 113-173 334-393 (402)
253 KOG2532 Permease of the major 31.6 2.4E+02 0.0052 29.9 8.9 136 7-175 272-417 (466)
254 COG1377 FlhB Flagellar biosynt 28.5 6.6E+02 0.014 25.8 15.3 51 230-280 126-180 (363)
255 TIGR00805 oat sodium-independe 25.0 1.2E+02 0.0026 33.4 5.5 66 12-77 349-416 (633)
256 TIGR02871 spore_ylbJ sporulati 24.3 7.8E+02 0.017 25.2 11.0 38 136-174 98-135 (362)
257 PRK12721 secretion system appa 23.8 7.8E+02 0.017 25.0 14.8 18 230-247 119-136 (349)
258 PRK10263 DNA translocase FtsK; 23.2 1.1E+03 0.023 28.7 12.6 16 113-128 68-83 (1355)
259 PF05393 Hum_adeno_E3A: Human 21.9 1.1E+02 0.0024 24.4 3.2 27 431-457 40-69 (94)
260 TIGR02185 Trep_Strep conserved 21.2 6.4E+02 0.014 23.1 10.8 35 38-72 38-72 (189)
261 KOG2533 Permease of the major 20.9 1E+03 0.022 25.4 12.2 37 135-171 387-424 (495)
No 1
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=100.00 E-value=3.5e-93 Score=741.70 Aligned_cols=449 Identities=59% Similarity=1.006 Sum_probs=421.7
Q ss_pred CchhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHH
Q 012495 1 MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFL 80 (462)
Q Consensus 1 ~~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~ 80 (462)
||||+.++|+++|++||++++++.| ||++||+|+|.++|++++++.+|+|++||++|++++++++.+|+++|++|+++
T Consensus 32 m~f~i~f~y~~lR~~KD~lvvt~~g--ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~v 109 (491)
T PF03219_consen 32 MFFFILFNYTILRDLKDTLVVTAQG--AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFV 109 (491)
T ss_pred HHHHHHHHHHHHHHhcCeEEEecCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHH
Q 012495 81 LYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGA 160 (462)
Q Consensus 81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~ 160 (462)
+||++|.+||+.++|+++...+++++|++.+.|+|++++||+++|+||++++|++||+++||+||.|||||+||++++|+
T Consensus 110 lyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ga 189 (491)
T PF03219_consen 110 LYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGA 189 (491)
T ss_pred HhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHhhh-hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCc----cccccccCCCCCh
Q 012495 161 NVALIFSGRTVKYFSN-LRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNV-ELPT----RSKKKKEKPKMGT 234 (462)
Q Consensus 161 ~lG~i~gg~~~~~l~~-~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~-~~p~----~~~~~~~k~~~~~ 234 (462)
|+|.++||.++.++++ .++..+++.+.|...++.++....++|.+++..++++++.. +.|+ ..+++|+|+|.++
T Consensus 190 nigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~~kk~k~k~s~ 269 (491)
T PF03219_consen 190 NIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKKKKKKKPKMSL 269 (491)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhcccccCCCccH
Confidence 9999999999999998 66667777888887777777777788888888888887765 2332 2345677788999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchh
Q 012495 235 MESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWG 314 (462)
Q Consensus 235 ~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~ 314 (462)
.|++|.++||||+++|++++++|+++.|++|++||..+++.|+|++|+++|+|.++.++|+++++.++++++++||+||+
T Consensus 270 ~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~ 349 (491)
T PF03219_consen 270 KESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR 349 (491)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987668899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcc-cchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccCCchhhhc
Q 012495 315 VAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKF-GMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVK 393 (462)
Q Consensus 315 ~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~-~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k 393 (462)
.+++++|+++++++++||++.++++...+..+.+ +.+|+.+++++|++||+++|+.|||++||+|||+|+|+|+|+|+|
T Consensus 350 ~~AlitPiv~lit~~~FF~~~~f~~~~~~~~~~~~~~~pl~lav~~G~i~~v~~K~~kYs~fd~~kEm~yipld~e~k~k 429 (491)
T PF03219_consen 350 TAALITPIVILITGLLFFGFILFNNSLGPIVASLFGTSPLMLAVFFGAIQNVLSKSAKYSLFDPTKEMAYIPLDPESKYK 429 (491)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhccchHHHHHHHHHHHHHHHhhcceeecchhhhhhcccCCHHHHhh
Confidence 9999999999999999999999988777666666 889999999999999999999999999999999999999999999
Q ss_pred cceeeeeecccchhhHHHHHHHHHHHHh--hhhhhhhhHHHHHHHHHHHHHHHHhhhhcc
Q 012495 394 GKAAIDVVCNPLGKSGGALIQQFMILTF--GSLANSTPYLGGDTFGDCSCMVRSSQVFRY 451 (462)
Q Consensus 394 ~K~~iD~l~~r~Gk~~gs~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~Wi~~~~~~~~ 451 (462)
+|+++|++|+|+||++||++|++++..+ ++++..+|+++.+.+++|.+|+++..+|.+
T Consensus 430 ~Ka~iD~~~~r~GKs~gs~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~Wi~~v~~L~~ 489 (491)
T PF03219_consen 430 GKAAIDVVGSRLGKSGGSLIQQGLLSLFPSGSIRASTPYLAVILIIIIILWIYAVIYLNK 489 (491)
T ss_pred cceeeeeeccchhhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 669999999999999999999999999874
No 2
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=100.00 E-value=1.4e-92 Score=733.87 Aligned_cols=450 Identities=72% Similarity=1.139 Sum_probs=419.9
Q ss_pred CchhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHH
Q 012495 1 MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFL 80 (462)
Q Consensus 1 ~~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~ 80 (462)
||||++++|+++||+||++++++.|+|+|++||+|+++++||+++++|+|+|++||++|++++++++.+|+.+|++|+++
T Consensus 15 ~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v 94 (472)
T TIGR00769 15 MFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV 94 (472)
T ss_pred HHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999998876799999999999999999889999999999999999999999999999999999
Q ss_pred HhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHH
Q 012495 81 LYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGA 160 (462)
Q Consensus 81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~ 160 (462)
++|++|.+||+.++|+++...++++++++.+.++|++++||+|+|+||++++|++||+++||+||+||+||+||++++|+
T Consensus 95 l~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ga 174 (472)
T TIGR00769 95 IYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGA 174 (472)
T ss_pred HhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCc----cccccccCCCCChH
Q 012495 161 NVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVE-LPT----RSKKKKEKPKMGTM 235 (462)
Q Consensus 161 ~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~-~p~----~~~~~~~k~~~~~~ 235 (462)
|+|.++||.++.++++.++++++..++|...++.++....+++.+++.++++++++.. .|+ +++++|+|+|.++.
T Consensus 175 nlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~ 254 (472)
T TIGR00769 175 NVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTM 254 (472)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHH
Confidence 9999999999999998877777777888777766666667778888888888877652 222 12345667789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHH-HHHhhHHHHHHhchh
Q 012495 236 ESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFT-MMLLSQFVFDKFGWG 314 (462)
Q Consensus 236 ~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~-q~~l~~~li~r~G~~ 314 (462)
||+|.++||||++.|++++++|++++|++|++||+.+++.+||++|+++|+|.++.++|+++++ |.+. ++++||+||+
T Consensus 255 es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~-~~l~~~~Gw~ 333 (472)
T TIGR00769 255 ESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLS-GNVIRKYGWL 333 (472)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999954 7666 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccCCchhhhcc
Q 012495 315 VAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKG 394 (462)
Q Consensus 315 ~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k~ 394 (462)
.++.++|+++++++++||++.+++++..+..+.+|.+|+.+++++|+++|+++|+.|||++||+|||+|+|+|+|+|+|+
T Consensus 334 ~~a~i~Pii~lit~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g~~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~ 413 (472)
T TIGR00769 334 TAALITPLVMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVGAIQNILSKSTKYSLFDATKEMAYIPLDEEQKVKG 413 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccChHHHHHHHHHHHHHHHHHhhhccccHHHHHhcccCCHHHHHHh
Confidence 99999999999999999999999998777666678889889999999999999999999999999999999999999999
Q ss_pred ceeeeeecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhhhcc
Q 012495 395 KAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGDTFGDCSCMVRSSQVFRY 451 (462)
Q Consensus 395 K~~iD~l~~r~Gk~~gs~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~~~~~~~~ 451 (462)
|+++|++++|+||++||++|+++...+++....+|+++.+.+++|.+|+....+|.+
T Consensus 414 Ka~iD~v~~r~Gks~gs~i~~~l~~~~~~~~~~~~~~~~i~~~i~~~Wi~~v~~L~~ 470 (472)
T TIGR00769 414 KAAIDVVAARLGKSGGALIQQGLLVIFGSLAASTPYLAVILLIIVTAWLAAAKSLNK 470 (472)
T ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999875
No 3
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=100.00 E-value=8.7e-91 Score=701.95 Aligned_cols=447 Identities=44% Similarity=0.801 Sum_probs=406.1
Q ss_pred CchhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHH
Q 012495 1 MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFL 80 (462)
Q Consensus 1 ~~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~ 80 (462)
||||++++|+++|++||+++++++| ||.+||+|+|+++|++++++++|+|++++++|++++++++.+|+.+|++||++
T Consensus 35 l~f~I~~ny~~lR~lKDslvv~~~g--ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~V 112 (509)
T COG3202 35 LFFCILFNYNLLRSLKDSLVVTRQG--AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFV 112 (509)
T ss_pred HHHHHHHHHHHHHHhhhheEeecCc--chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999877 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCch-HHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhH
Q 012495 81 LYPLSNAIHPQA-LADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLG 159 (462)
Q Consensus 81 l~p~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag 159 (462)
+||++|.+||++ +.+...+..|++++|.+.+.++|+++++|+++|+||++++|++||+++||+||.||+||+||+++.+
T Consensus 113 i~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~ 192 (509)
T COG3202 113 IYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLG 192 (509)
T ss_pred HhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHH
Confidence 999999999995 5666666666699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCc-----cccccccCCCCC
Q 012495 160 ANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVE-LPT-----RSKKKKEKPKMG 233 (462)
Q Consensus 160 ~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~-~p~-----~~~~~~~k~~~~ 233 (462)
+|++.+++|.++.++++.++..-+-. -+..++.+......++.+++.++++++|... .|. ..+++++|+|.+
T Consensus 193 ~ni~lllsg~~~~~~~k~~~~~~~~~--~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~ 270 (509)
T COG3202 193 ANISLLLSGEVTSWLSKHRDALASEF--KDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLG 270 (509)
T ss_pred HHHHHHHHHHHHHHHhhchhhHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCc
Confidence 99999999999999998666432211 0111334455556677888888888888762 232 223455667889
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhc
Q 012495 234 TMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFG 312 (462)
Q Consensus 234 ~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G 312 (462)
+.|++|++.||||+++|++.+++|++++|++|.+||..+++.|++++|+++|+|+++.++|+++ +++++.+++++||.|
T Consensus 271 ~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~G 350 (509)
T COG3202 271 LIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVG 350 (509)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999997 558999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcc-cchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccCCchhh
Q 012495 313 WGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKF-GMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTK 391 (462)
Q Consensus 313 ~~~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~-~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r 391 (462)
|..+++++|++++++++.||+++++++..++.++.. +.+|+.+++.+|++||+++|+.||+++|++|||+|+|+|||+|
T Consensus 351 W~~~AlitPiv~litg~lFF~~~~f~~~~~~~~~~~~~~~pl~L~v~iG~iqnvlsK~~KYslfD~tKEma~ipldpe~r 430 (509)
T COG3202 351 WFTGALITPLVMLITGVLFFGFAFFNNSIGSIFGGILGSPPLVLAVYIGGIQNVLSKITKYSLFDATKEMAYIPLDPEYR 430 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCCchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHcCcCCHhHH
Confidence 999999999999999999999999998877664433 7788889999999999999999999999999999999999999
Q ss_pred hccceeeeeecccchhhHHHHHHHHHHHHhh--hhhhhhhHHHHHHHHHHHHHHHHhhhhcc
Q 012495 392 VKGKAAIDVVCNPLGKSGGALIQQFMILTFG--SLANSTPYLGGDTFGDCSCMVRSSQVFRY 451 (462)
Q Consensus 392 ~k~K~~iD~l~~r~Gk~~gs~i~~~l~~~~~--~~~~~~~~~~~~~~~~~~~Wi~~~~~~~~ 451 (462)
+|+|+++|++|.|+||++||++|+++..+++ +++..+|+++++++++|.+|+++..++-+
T Consensus 431 ~kgKAa~D~i~~k~GKSiGSli~~~~~~i~~~~~~~~~~~v~~~i~~ii~~~Wi~~v~~Lnk 492 (509)
T COG3202 431 TKGKAAVDVIGGKLGKSIGSLIQSLLFIIFPTADVRAISPVLAVIFIIICVLWIYAVKYLNK 492 (509)
T ss_pred hhccchhhhhhhcccccHHHHHHHHHHheecHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 69999999999999999999999998863
No 4
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.65 E-value=1.3e-13 Score=142.02 Aligned_cols=333 Identities=9% Similarity=-0.064 Sum_probs=193.0
Q ss_pred hhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012495 4 CILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYP 83 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p 83 (462)
+..++.++.......+. ...|.++++.+++...+.++. .++.|..|+++||+||||++..+...+...-+++++..
T Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~-~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~-- 89 (393)
T PRK11195 14 FSALADNALLFAAIALL-KELHYPDWSQPLLQMFFVLAY-IVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI-- 89 (393)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHH-HHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH--
Confidence 33444444555444443 335655778899998888777 58999999999999999999999887766544333210
Q ss_pred cccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHH
Q 012495 84 LSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVA 163 (462)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG 163 (462)
+ + .+.++..++.+....+ ...+++.|++++||+.|..+..+...++|
T Consensus 90 -----------------------------~-~--~~~r~l~G~~~a~~~p-a~~a~i~~~~~~~~~~~a~~~~~~~~~~~ 136 (393)
T PRK11195 90 -----------------------------H-P--LLAYGLVGIGAAAYSP-AKYGILTELLPGEKLVKANGWMEGSTIAA 136 (393)
T ss_pred -----------------------------H-H--HHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 1 1 2344567777777777 59999999999999999999999999999
Q ss_pred HHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccc--ccCC----CCChHHH
Q 012495 164 LIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKK--KEKP----KMGTMES 237 (462)
Q Consensus 164 ~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~--~~k~----~~~~~~~ 237 (462)
.++|+.+.+.+.... ....+ .+.+.+.+... ...... ||.++++ ++++ ..+..++
T Consensus 137 ~~~Gp~lgG~l~~~~---------------~~~~~-~i~~~~~~~~~-~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~ 197 (393)
T PRK11195 137 ILLGTVLGGALADPH---------------AEAAL-AVCALIYLLAA-LFNLFI--PRLGARRPGQSWNPIALLRDFFHA 197 (393)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHH-HHHHHHHHHHH-HHHhcC--CCCcccccccCCCHHHHHHHHHHH
Confidence 998888777654310 11111 11111111111 011122 2211111 1111 1133566
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHH
Q 012495 238 LKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAA 317 (462)
Q Consensus 238 l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~ 317 (462)
.+.++++|.+........+........++....+.++.++.++. ..|......++..++...+.+|+.+|.+.+...
T Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~---~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~ 274 (393)
T PRK11195 198 CRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLN---QPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL 274 (393)
T ss_pred HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh---HHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH
Confidence 78889999876655544444455555666666666766665553 245556666666665667778888888877655
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccCCchhhhccce-
Q 012495 318 KITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKA- 396 (462)
Q Consensus 318 ~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k~K~- 396 (462)
...-. .++....+.+.+ ++...... .+.-+.-..+..+..+...+..+||++.+++.
T Consensus 275 ~~g~~----~~~~~~~~~~~~------------~~~~~~~~------~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~ 332 (393)
T PRK11195 275 PAGIL----MGLVVLLMALQH------------SLLPAYPL------LILIGALGGFFVVPMNALLQHRGHVLVGAGHSI 332 (393)
T ss_pred HHHHH----HHHHHHHHHHHh------------HHHHHHHH------HHHHHHhhhhhhhhHHHHHHhhCcccccchhHH
Confidence 43321 122222222111 01110000 00112244555555555556666665434443
Q ss_pred eeeeecccchhhHHHHHHHHH
Q 012495 397 AIDVVCNPLGKSGGALIQQFM 417 (462)
Q Consensus 397 ~iD~l~~r~Gk~~gs~i~~~l 417 (462)
.+....+.+|..+|..+...+
T Consensus 333 a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 333 AVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 245577788888877776533
No 5
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.64 E-value=2.4e-13 Score=136.43 Aligned_cols=269 Identities=12% Similarity=0.102 Sum_probs=166.9
Q ss_pred hhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012495 4 CILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYP 83 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p 83 (462)
+..++.++..+.-+.+..+ .+.++++++++.+...++. .+..|..|+++||+||||++............+.++.-.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~-~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~- 86 (365)
T TIGR00900 10 ISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPY-VVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL- 86 (365)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHH-HHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3445555555555555555 4555778899988776544 689999999999999999988877666555544443210
Q ss_pred cccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHH
Q 012495 84 LSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVA 163 (462)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG 163 (462)
.+. .+.|...+.++..++......+ ...+++.|.+++||+.|.++....+.++|
T Consensus 87 ----~~~---------------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 140 (365)
T TIGR00900 87 ----LGG---------------------LNIWQVYVLAGILAIAQAFFTP-AYQAMLPDLVPEEQLTQANSLSQAVRSLF 140 (365)
T ss_pred ----cCC---------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHhHHHHHHHHH
Confidence 000 1456666777777777766666 58999999999999999999999999999
Q ss_pred HHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccc----CCCCChHHHHH
Q 012495 164 LIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKE----KPKMGTMESLK 239 (462)
Q Consensus 164 ~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~----k~~~~~~~~l~ 239 (462)
.++|+.+...+.+. . +|.... ....+...+........+ .||+++++++ +.+.+..++++
T Consensus 141 ~~~g~~l~~~l~~~---~-----g~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (365)
T TIGR00900 141 YIVGPGIGGLMYAT---L-----GIKWAI----WVDAVGFAISALLIVSVR----IPELAASEIQALSNAVLRDTREGIK 204 (365)
T ss_pred HHHHHHHHHHHHHH---h-----hHHHHH----HHHHHHHHHHHHHHHhcc----cccCCCccccccchhHHHHHHhHHH
Confidence 99998887766431 1 121111 000111111111111111 1221111111 11123567788
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHH
Q 012495 240 FLVSSRYIRDLATLVVAYGISINLVE-VTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAK 318 (462)
Q Consensus 240 ~i~~s~yl~~l~~~v~~~~~~~~l~e-~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~ 318 (462)
.++|+|.+..++...+.+........ .....+.++.++.+++.. |......++..++-..+.+++.||.|.+....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (365)
T TIGR00900 205 FVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHY---GWVLAAFGLGALLGALLLGLLGRYFKRMALMT 281 (365)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 89999998877777777766665555 444555555455444332 33455555555554556779999999887765
Q ss_pred HH
Q 012495 319 IT 320 (462)
Q Consensus 319 i~ 320 (462)
..
T Consensus 282 ~~ 283 (365)
T TIGR00900 282 GA 283 (365)
T ss_pred HH
Confidence 44
No 6
>PRK10054 putative transporter; Provisional
Probab=99.61 E-value=4.1e-13 Score=138.46 Aligned_cols=370 Identities=9% Similarity=0.034 Sum_probs=198.7
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL 81 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l 81 (462)
.|+...+++..-|.-...+.+.+|-++++.+++.+.... .+.+..|..|+++||+|||+++..+...+.+.+.++++.
T Consensus 16 ~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~-~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~- 93 (395)
T PRK10054 16 SLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALT-IGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV- 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-
Confidence 367788888888887777766567567889999886654 456889999999999999999887777666665554432
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGAN 161 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~ 161 (462)
.+.|...+.+...+.......+ ..++..+|.+++|++.|.+++...+.+
T Consensus 94 ------------------------------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~ 142 (395)
T PRK10054 94 ------------------------------NNVTLVVLFFALINCAYSVFST-VLKAWFADNLSSTSKTKIFSLNYTMLN 142 (395)
T ss_pred ------------------------------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHhHHHHHHHHHHHHHH
Confidence 1234444444333333223344 488999999999999999999999999
Q ss_pred HHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHH
Q 012495 162 VALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFL 241 (462)
Q Consensus 162 lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i 241 (462)
+|..+|+.+...+.+ .| |...+. .... ......+.....+++.. |+++ ++++ +. ...+.+
T Consensus 143 lg~~igp~l~~~l~~----~g-----~~~~f~-~~~~--~~~i~~i~~~~~~~~~~--~~~~---~~~~--~~-~~~~~~ 202 (395)
T PRK10054 143 IGWTVGPPLGTLLVM----QS-----INLPFW-LAAI--CSAFPLVFIQIWVQRSE--KAIA---TETG--SV-WSPSVL 202 (395)
T ss_pred HHHHHHHHHHHHHHH----hc-----cCcHHH-HHHH--HHHHHHHHHHHHHhccc--cccc---cchh--hh-hhhhhh
Confidence 999999888876642 12 111111 1111 11111111221122221 1111 1111 11 123567
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHH
Q 012495 242 VSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITP 321 (462)
Q Consensus 242 ~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P 321 (462)
+|+|.+.......++.......+......+..+.. +.+.-....+.+....++..+......+++.+|.|.+..+...-
T Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 281 (395)
T PRK10054 203 LQDKALLWFTCSGFLASFVSGAFASCISQYVMVVA-DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGT 281 (395)
T ss_pred ccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhc-ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHH
Confidence 77887666665555555544333333333333221 11111123333344433333322355678889999887665443
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhcccchhHH-HHHHHHHHHHHHHHhhhhhccccchhhccccCCc-hhhhccceeee
Q 012495 322 TVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLL-AAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDE-DTKVKGKAAID 399 (462)
Q Consensus 322 ~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~-~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~-~~r~k~K~~iD 399 (462)
. +.+++...+.+..++ . ..+. ..+.. +..+...-|+.+++-....| +.|.+.-+..+
T Consensus 282 ~---~~~~~~~~~~~~~~~---~------~~~~~~~~~~---------~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~ 340 (395)
T PRK10054 282 L---CFVIGLVGFIFSGNS---L------LLWGMSAAVF---------TVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS 340 (395)
T ss_pred H---HHHHHHHHHHHcchH---H------HHHHHHHHHH---------HHHHHHHHhhHHHHHHHhCCcccceehHhHHH
Confidence 2 233333333321110 0 0011 11111 22445555666544434333 33322211111
Q ss_pred --eecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhhhccccc
Q 012495 400 --VVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGDTFGDCSCMVRSSQVFRYPIY 454 (462)
Q Consensus 400 --~l~~r~Gk~~gs~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~~~~~~~~~~~ 454 (462)
.++.-+|+.+++.+. +..........+....|.+|+.-..|-|.|-+
T Consensus 341 ~~~~G~~~Gp~~~G~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (395)
T PRK10054 341 LGWLGAAINPLVSGVIL--------TTLPPWSLFVILALAIVAAWLLMLKGMRARPW 389 (395)
T ss_pred HHHHHHHHHHHHHHHHH--------HHcChhhHHHHHHHHHHHHHHHHHhccccCcc
Confidence 134445555555544 22222223355678899999999998886543
No 7
>PRK03545 putative arabinose transporter; Provisional
Probab=99.60 E-value=2.2e-12 Score=132.31 Aligned_cols=248 Identities=12% Similarity=0.080 Sum_probs=147.4
Q ss_pred HHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 012495 10 TILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIH 89 (462)
Q Consensus 10 ~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~ 89 (462)
++.-|+.|.+..+ +|-++++.+++...+.... .+..+..|+++||+||||++......+.+...++++.
T Consensus 26 ~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~-~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 94 (390)
T PRK03545 26 FVPVGLLSDIAQS-FHMQTAQVGLMLTIYAWVV-ALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA--------- 94 (390)
T ss_pred HHHHcchHHHHhH-cCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh---------
Confidence 3444555555444 6666788899888665444 4677888999999999999998887777766555542
Q ss_pred CchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhh
Q 012495 90 PQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGR 169 (462)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~ 169 (462)
.+.|...+.++..++.+....+ ...++++|.+++||+.|.++....+.++|..+|+.
T Consensus 95 ----------------------~~~~~l~~~r~~~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~ 151 (390)
T PRK03545 95 ----------------------WNFTVLLISRIGIAFAHAIFWS-ITASLAIRVAPAGKKAQALSLLATGTALAMVLGLP 151 (390)
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhh
Confidence 1456666677777776655555 57889999999999999999999999999999988
Q ss_pred hHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHH
Q 012495 170 TVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRD 249 (462)
Q Consensus 170 ~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~ 249 (462)
+...+.+. . +|...+ .+.+.+.+.......... ||.+++ ++ +..+..+.++|+|.+..
T Consensus 152 l~~~l~~~---~-----gw~~~f-------~~~~~~~~l~~~~~~~~~--~~~~~~--~~---~~~~~~~~~~~~~~~~~ 209 (390)
T PRK03545 152 LGRVIGQY---L-----GWRTTF-------LAIGGGALITLLLLIKLL--PLLPSE--HS---GSLKSLPLLFRRPALVS 209 (390)
T ss_pred HHHHHHHH---h-----cHHHHH-------HHHHHHHHHHHHHHHHhC--CCCCCC--Cc---chHHHHHHHHhCcHHHH
Confidence 87765421 1 122111 111111111111111112 321111 11 12344566778887654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHH
Q 012495 250 LATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVA 316 (462)
Q Consensus 250 l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~ 316 (462)
.....++..............+.++..+.+++. .+......++.+++-.++.+++.+|+|.+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~---~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~ 273 (390)
T PRK03545 210 LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENF---ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL 273 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Confidence 444333333222222222233445544433322 2333445555555545667899999997653
No 8
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.58 E-value=1.1e-11 Score=127.81 Aligned_cols=266 Identities=15% Similarity=0.185 Sum_probs=164.0
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccc-----Cchh-HHHHHHHHHHHHHHHHHHH
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKL-----SKQA-LFYTVIVPFIAFFGAFGFL 80 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~-----~r~~-v~~~~l~~f~~~~~lf~~~ 80 (462)
..+++..+..+....+ .|-+.++++.+... .+| .++.|++|.++||+ |||| .+..+....++...+.++.
T Consensus 13 ~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~-~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 13 LPLALTSGTLQAWMTV-EGLDIQTIGFFSLV-GQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred hhHHHHHHHHHHHHHH-cCCCHHHHHHHHHH-HHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 4456777777777766 47668999999764 446 48999999999999 7765 6776666666665544431
Q ss_pred HhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHH
Q 012495 81 LYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGA 160 (462)
Q Consensus 81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~ 160 (462)
+++ .+.|.....++..+...+.... ...+++.|.+++||+.|..+....|.
T Consensus 89 --------~~~--------------------~~~~~l~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~r~~~~~~~~~g~ 139 (402)
T PRK11902 89 --------PPH--------------------AALWPLAGLAVLVAFLSASQDI-VFDAYSTDVLHPEERGAGAAVKVLGY 139 (402)
T ss_pred --------Ccc--------------------chHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcChhhhhHHHHHHHHHH
Confidence 111 1346556665555666666656 59999999999999999999999999
Q ss_pred HHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHH
Q 012495 161 NVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKF 240 (462)
Q Consensus 161 ~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~ 240 (462)
++|.++|+.+...+.+. . .+|...+ .+.+.+.+.... .....++|+.+++++++.+.+..++++.
T Consensus 140 ~~g~i~g~~l~~~l~~~---~----~gw~~~f-------~i~a~~~l~~~l-~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 204 (402)
T PRK11902 140 RLAMLVSGGLALWLADR---V----LGWGNTY-------LLMAGLMLAGAL-TTLWAPEPEVPARPPRSLGEAVVGPLRD 204 (402)
T ss_pred HHHHHHHhHHHHHHHhc---c----cCHHHHH-------HHHHHHHHHHHH-HHHhcCCCcccccccchhHHHHHHHHHH
Confidence 99999999877765421 0 1333222 111111111110 1111222322111111111235678889
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhchhHHHHH
Q 012495 241 LVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFGWGVAAKI 319 (462)
Q Consensus 241 i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G~~~~~~i 319 (462)
++|+|..+.++...+++................+..+-+++ ..|......++.. ++...+.+++.+|+|-++...+
T Consensus 205 l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~---~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~ 281 (402)
T PRK11902 205 FFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAG---EVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLML 281 (402)
T ss_pred HHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999888777777776665544433333334444443332 2333444555543 4567888999999998887655
Q ss_pred HHHH
Q 012495 320 TPTV 323 (462)
Q Consensus 320 ~P~~ 323 (462)
.-++
T Consensus 282 ~~~~ 285 (402)
T PRK11902 282 FGVL 285 (402)
T ss_pred HHHH
Confidence 5543
No 9
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.57 E-value=7.3e-12 Score=127.27 Aligned_cols=267 Identities=10% Similarity=0.096 Sum_probs=155.8
Q ss_pred HHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 012495 10 TILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIH 89 (462)
Q Consensus 10 ~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~ 89 (462)
+..-|.-|.+..+ .|-++++.+++.....+.. .+..+..|+++||+|||+++............++++.
T Consensus 8 ~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~-~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--------- 76 (377)
T PRK11102 8 DMYLPALPVIAAD-FGVSAGSVQMTLSAYILGF-AIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--------- 76 (377)
T ss_pred HHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHH-HHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 3444666665544 5555778899888766544 5789999999999999999887776666655554431
Q ss_pred CchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhh
Q 012495 90 PQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGR 169 (462)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~ 169 (462)
.+.|...+.+...++....... ...+++.|.+++||+.|.+++...+.++|.++|+.
T Consensus 77 ----------------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 77 ----------------------QTIDQLIYMRFLHGLAAAAASV-VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345566667777776655555 58899999999999999999999999999999888
Q ss_pred hHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCccccc-cccC-CCCChHHHHHHHhhcHH
Q 012495 170 TVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSI-CGLYWWVNNNVELPTRSKK-KKEK-PKMGTMESLKFLVSSRY 246 (462)
Q Consensus 170 ~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~-l~~~~~~~~~~~~p~~~~~-~~~k-~~~~~~~~l~~i~~s~y 246 (462)
+...+.+. . +|.... . .......+. +...... ||+.++ ++++ +.....+..+.++++|.
T Consensus 134 ~~~~l~~~---~-----~~~~~~---~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (377)
T PRK11102 134 IGGWLLVW---F-----SWHAIF---W-VLALAAILAAALVFFFI------PETLPKERRQPFHLRTTIRNFASLFRHKR 195 (377)
T ss_pred HHHHHHHH---c-----ChHHHH---H-HHHHHHHHHHHHHHHhC------CccCcccccCCCChHHHHHHHHHHHcChH
Confidence 77665431 1 121111 0 001111111 1111111 221111 1111 11123456667788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHH
Q 012495 247 IRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLL 326 (462)
Q Consensus 247 l~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~l~ 326 (462)
....+..........+...........+.++.+++. .|.+....++..++-..+.+++.+|+|.++...+...+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~---~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQN---FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFI 272 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 554444333332222212111122333444444422 23345555555554566788999999999988777665444
Q ss_pred HHHHH
Q 012495 327 TGVGF 331 (462)
Q Consensus 327 ~~~~f 331 (462)
.++.+
T Consensus 273 ~~~~~ 277 (377)
T PRK11102 273 MGIWL 277 (377)
T ss_pred HHHHH
Confidence 44433
No 10
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.56 E-value=5.5e-12 Score=130.05 Aligned_cols=263 Identities=11% Similarity=0.004 Sum_probs=155.1
Q ss_pred HHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 012495 6 LFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLS 85 (462)
Q Consensus 6 ~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~ 85 (462)
.++.+...|..+.+..+ +|-++++.++....+.+. ..+..+..|+++||+||||++......+.....+.+..
T Consensus 26 ~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~-~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----- 98 (406)
T PRK15402 26 YIANDMIQPGMLAVVED-FNAGAEWVPTSMTAYLAG-GMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA----- 98 (406)
T ss_pred HhhhhhHhcchHHHHHH-hCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----
Confidence 34556666776665544 665577888888876654 46788999999999999999888776666655444331
Q ss_pred cccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHH
Q 012495 86 NAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALI 165 (462)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i 165 (462)
+ +.|...+.+.+.++-.....+ ..++.++|.+++|++.|..++...+.++|..
T Consensus 99 ----~----------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
T PRK15402 99 ----Q----------------------SIEQFTLLRFLQGIGLCFIGA-VGYAAIQESFEEADAIKITALMANVALLAPL 151 (406)
T ss_pred ----c----------------------cHHHHHHHHHHHHhHhhhHHH-HHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence 1 234455556666665545455 5889999999999999999999888888888
Q ss_pred hhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccC-CCCChHHHHHHHhhc
Q 012495 166 FSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEK-PKMGTMESLKFLVSS 244 (462)
Q Consensus 166 ~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k-~~~~~~~~l~~i~~s 244 (462)
+|+.+...+.+. . +|.... ....+...++.... .... ||++++++++ +..+..++++.++++
T Consensus 152 ~g~~i~~~l~~~---~-----~w~~~~----~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (406)
T PRK15402 152 LGPLVGAALIHV---L-----PWRGMF----VLFAALAALSFFGL---WRAM--PETAGRVGEKLSLKELGRDYKLVLKN 214 (406)
T ss_pred HHHHHHHHHHHc---c-----CccHHH----HHHHHHHHHHHHHH---HHhC--CCCCccccccccHHHHHHHHHHHHcC
Confidence 888777665431 1 122111 01011111111111 1111 3322211111 123456788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 245 RYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 245 ~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
|.+..++....+..............+.++.++.+++. .|.......+..++-..+.+++.+|+|.++...+.-+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~---~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~ 289 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYE---YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLW 289 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 98776666555544433223333333444444433322 2222333333334345678899999999887765544
No 11
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.54 E-value=1.9e-11 Score=130.21 Aligned_cols=326 Identities=14% Similarity=0.124 Sum_probs=199.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
.+++.......+...+|. +++.+.-|.+.||++|||++..+-...++..++.+++.+ .+
T Consensus 41 t~S~~~valv~~a~~LP~-~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~-----~~--------------- 99 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPI-LLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAF-----FG--------------- 99 (524)
T ss_pred hCCHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH-----hC---------------
Confidence 345778888888888888 689999999999999999998887766555444443321 00
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCC
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPG 184 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~ 184 (462)
..+.|...++=...++.+.+..+ ...+.+.|+.+.||-++..++.+...|++-++|+.+.+.
T Consensus 100 ------~~~~~~Ll~~~fl~g~~~a~~~P-A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~----------- 161 (524)
T PF05977_consen 100 ------LLSPWLLLILTFLLGIGSAFFNP-AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI----------- 161 (524)
T ss_pred ------cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH-----------
Confidence 02456666666777777777777 499999999999999999999999999999865544443
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Q 012495 185 VDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLV 264 (462)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~ 264 (462)
+....+....+.+-++..+.....+..+...++.++.++++-..++.+|++.+.++|.++.+......+++....+
T Consensus 162 ----Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~ 237 (524)
T PF05977_consen 162 ----LVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAV 237 (524)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHH
Confidence 3322221111121111111111111111100111111222223568899999999999988877777777776666
Q ss_pred HHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 012495 265 EVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPA 344 (462)
Q Consensus 265 e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~ 344 (462)
....-..+++..+.++ ..+|.+.+..|+-.++-.++.+++-++++........-+ ..+++.+.+.+..+. .
T Consensus 238 ~aLlPl~a~~~l~~~a---~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~---~~a~~~~~lal~~~~---~ 308 (524)
T PF05977_consen 238 WALLPLFARDVLGGGA---SGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASL---LFALALLLLALSPSF---W 308 (524)
T ss_pred HHhhhHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHH---HHHHHHHHHhcchHH---H
Confidence 6666777887776555 556778888888887667778888888888776554443 233333333322110 0
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHhhhhhccccch-hhccccCCchhhhccceeeeeecccchhhHHHHHHHHHH
Q 012495 345 LAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCK-EMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMI 418 (462)
Q Consensus 345 ~~~~~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~k-e~l~~~l~~~~r~k~K~~iD~l~~r~Gk~~gs~i~~~l~ 418 (462)
+. .....+.|+ .. ....++. -..-...|++.|.|.-+.+..+. ..|..+|+++...+.
T Consensus 309 ~~------~~~l~l~G~-~~--------~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~-~g~~~lGsll~G~la 367 (524)
T PF05977_consen 309 LA------LIALFLAGA-AW--------IIANSSLNTLVQLSVPDWVRGRVFSIYQMVF-FGGMPLGSLLWGFLA 367 (524)
T ss_pred HH------HHHHHHHHH-HH--------HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 00 011222333 12 2222222 23445667777888777666543 456666776665444
No 12
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.53 E-value=4.8e-12 Score=129.73 Aligned_cols=336 Identities=11% Similarity=0.018 Sum_probs=191.9
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL 81 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l 81 (462)
+|+...++++.-|.-+.+..+ .|-+.++++++.....+ ...+..|+++.++||++|++........... +++...
T Consensus 13 ~~~~~~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~---l~~~~~ 87 (382)
T TIGR00902 13 FFGYFCAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALI-ARFAGGLFFAPLIKDANHIIIALRLLALASA---IFAAAF 87 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---HHHHHH
Confidence 566777889999988877755 67667889998886654 5568999999999999986543322221111 111111
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGAN 161 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~ 161 (462)
.. . ..+.|...+.++..+...+...+ ..-+++.|. .||+.|.|+.+..+++
T Consensus 88 ~~----~----------------------~~~~~~l~~~~~l~~~~~~~~~p-~~~al~~~~--~~~~~~~~g~~~~~~s 138 (382)
T TIGR00902 88 SA----G----------------------AHNAWLLFIAIGLFALFFSAGMP-IGDALANTW--QKQFGLDYGKVRLIGS 138 (382)
T ss_pred HH----h----------------------hhhHHHHHHHHHHHHHHHccchh-HHHHHHHHH--HHHcCCCccHHHHHHH
Confidence 00 0 01456666667666655555566 477777664 5788899999999999
Q ss_pred HHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHH
Q 012495 162 VALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFL 241 (462)
Q Consensus 162 lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i 241 (462)
+|.++|+.+.+.+.+. .| |...... . ... ..+........+.. .|+++++ + ++.+..+..+.+
T Consensus 139 lG~~~g~~l~g~l~~~---~g-----~~~~f~~---~-~~~-~~~~~~~~~~~~~~-~~~~~~~--~-~~~~~~~~~~~~ 201 (382)
T TIGR00902 139 AAFIIGSALFGGLIGM---FD-----EQNILAI---L-TAG-LAFMLIGFLIKPTI-PPKDAIP--E-DESQGDSAFIAL 201 (382)
T ss_pred HHHHHHHHHHHHHHHH---cC-----hhHHHHH---H-HHH-HHHHHHHHHcCCCC-CCCcccc--c-cccccchhHHHH
Confidence 9999999888776532 22 2211110 1 111 11111111111110 1111111 1 111223456678
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhchhHHHHHH
Q 012495 242 VSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFGWGVAAKIT 320 (462)
Q Consensus 242 ~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G~~~~~~i~ 320 (462)
+|+|.+.......++...+....+.....+.++ .+.+++.. |..... +.+. +++..+.+++.||+|.+..+.+.
T Consensus 202 l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~---g~l~~~-~~~~~i~~~~~~~~l~~r~g~~~~l~~~ 276 (382)
T TIGR00902 202 LKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASAT---GLLWGI-GVLAEIIIFAFSNKLFQNCSARDLLLIS 276 (382)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHH---HHHHHH-HHHHHHHHHHHhHHHHhhCCHHHHHHHH
Confidence 889987777777777777777777766666665 55555333 333444 4444 56888899999999999987654
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccCCchhhhccceeeee
Q 012495 321 PTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDV 400 (462)
Q Consensus 321 P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k~K~~iD~ 400 (462)
-+ ..++.+....+.++. + ..+. .+ ...+..+++.-|+-...-...|+++|.++++.+..
T Consensus 277 ~~---~~~~~~~~~~~~~~~-------------~-~~~~---~q-~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~ 335 (382)
T TIGR00902 277 AI---ACVGRWAIIGAIEAF-------------P-LIFL---LQ-ILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNA 335 (382)
T ss_pred HH---HHHHHHHHHHhHhhH-------------H-HHHH---HH-HHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHH
Confidence 44 344444444332211 0 0000 01 22333455555554434444566677777877764
Q ss_pred e----cccchhhHHHHHH
Q 012495 401 V----CNPLGKSGGALIQ 414 (462)
Q Consensus 401 l----~~r~Gk~~gs~i~ 414 (462)
+ +.-+|..+|+.+.
T Consensus 336 ~~~g~g~~~g~~~~G~l~ 353 (382)
T TIGR00902 336 LAMGGLIAIFTAFAGFIY 353 (382)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3 3444555555554
No 13
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.53 E-value=1.6e-11 Score=125.99 Aligned_cols=267 Identities=9% Similarity=0.062 Sum_probs=152.0
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcch-----hhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHH
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEI-----IPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAF 77 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~-----l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf 77 (462)
|+...++++..|.-+.+..+ .|-+..+ .+.+.....+.. .+..|..|+++||+|||+++........+...++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 24 FLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFS-AIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence 56667888888888877654 5532222 356666555444 6789999999999999999887766655554443
Q ss_pred HHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhh
Q 012495 78 GFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFG 157 (462)
Q Consensus 78 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ 157 (462)
+.. .+.|...+.+++.++.+. ..+ ...+.++|.+++||+.+..+...
T Consensus 102 ~~~-------------------------------~~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 148 (408)
T PRK09874 102 GLA-------------------------------QNIWQFLILRALLGLLGG-FVP-NANALIATQVPRNKSGWALGTLS 148 (408)
T ss_pred HHH-------------------------------hhHHHHHHHHHHHHHhhh-hHH-hHHHHHHHhcCHhhhhHHHHHHH
Confidence 321 134555666666666553 345 47789999999999999999999
Q ss_pred hHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcCCCccccccccCCCCChHH
Q 012495 158 LGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICG-LYWWVNNNVELPTRSKKKKEKPKMGTME 236 (462)
Q Consensus 158 ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~-~~~~~~~~~~~p~~~~~~~~k~~~~~~~ 236 (462)
.+.++|.++|+.+.+.+.+. . +|...... . .+...+... .....++. .++++++++.+..+
T Consensus 149 ~~~~~g~~~~~~~~~~l~~~---~-----~~~~~~~~-~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 210 (408)
T PRK09874 149 TGGVSGALLGPLAGGLLADS---Y-----GLRPVFFI-T---ASVLFLCFLVTLFCIREN------FQPVSKKEMLHMRE 210 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHH---h-----CHHHHHHH-H---HHHHHHHHHHHHHHhccC------cccccchhhhHHHH
Confidence 99999999988887765431 1 12211100 0 111111111 11112111 11111111122334
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHH
Q 012495 237 SLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVA 316 (462)
Q Consensus 237 ~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~ 316 (462)
..+...+.+.+..+....+.+......++.....+..+...+..+.....|.+....++..++.....+++.+|+|.+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~ 290 (408)
T PRK09874 211 VVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI 290 (408)
T ss_pred HHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 44444344444444444444444444455555555555433333322223334444455554455667899999998887
Q ss_pred HHHHHH
Q 012495 317 AKITPT 322 (462)
Q Consensus 317 ~~i~P~ 322 (462)
....-.
T Consensus 291 ~~~~~~ 296 (408)
T PRK09874 291 LITALI 296 (408)
T ss_pred HHHHHH
Confidence 765544
No 14
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.53 E-value=3.7e-12 Score=130.47 Aligned_cols=336 Identities=12% Similarity=0.028 Sum_probs=185.6
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL 81 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l 81 (462)
+|+..+++++.-|.-+.+..+ .|.++++++.+.....+ ..++..|+.|+++||+||++...-.+........+ ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l-~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~ 89 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLV-ARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV-AFWF 89 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHH-HHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH-HHHH
Confidence 567778889999988877755 67678899999887765 44789999999999999943221111111111111 1100
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGAN 161 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~ 161 (462)
.+ .+.|...+.+...++..+...+ ...+.++|. .+|+.|-++....+++
T Consensus 90 ------~~----------------------~~~~~l~i~~~l~g~~~~~~~~-~~~a~~~~~--~~~~~~a~~~~~~~~~ 138 (382)
T PRK11128 90 ------GA----------------------HSFWLLFVAIGLFNLFFSPLVP-LTDALANTW--QKQIGLDYGKVRLWGS 138 (382)
T ss_pred ------hc----------------------ccHHHHHHHHHHHHHHHccccc-HHHHHHHHH--HhhccCCcchHHHHHH
Confidence 01 1356655556656665555666 477788876 5677888999999999
Q ss_pred HHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc-ccccCCCCChHHHHHH
Q 012495 162 VALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSK-KKKEKPKMGTMESLKF 240 (462)
Q Consensus 162 lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~-~~~~k~~~~~~~~l~~ 240 (462)
+|..+|+.+.+.+.+. .| |...+ ... .+...+.+... .. . ||..+ +++++++.+..++.+.
T Consensus 139 lg~~igp~lgg~l~~~---~g-----~~~~f---~~~-~~~~~~~~~~~--~~--~--~~~~~~~~~~~~~~~~~~~~~~ 200 (382)
T PRK11128 139 IAFVIGSALTGKLVSW---FG-----EQAIL---WIL-TAGVASMLLGQ--LL--R--PTIMPQGESRQQESAGWPAWKA 200 (382)
T ss_pred HHHHHHHHHHHHHHHH---cC-----hhHHH---HHH-HHHHHHHHHHH--Hc--c--CCCCCccccccccccccchHHH
Confidence 9999999888876532 22 21111 000 11111111111 11 1 21111 1111111112356788
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHH
Q 012495 241 LVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKIT 320 (462)
Q Consensus 241 i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~ 320 (462)
++|+|.+..+....++.+......+.....+.++ .+.++ ...|.......+..+.+.++.+++.||+|.+......
T Consensus 201 i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~---~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~ 276 (382)
T PRK11128 201 LLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSA---STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLS 276 (382)
T ss_pred HHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCH---hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 8899987776666666665555555555555554 33333 2234344444444456778899999999999986544
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccCCchhhhccceeeee
Q 012495 321 PTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDV 400 (462)
Q Consensus 321 P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k~K~~iD~ 400 (462)
-+ ..+++++.+...++ |.. +++.. +.-+..+.+..|+-.....+.+++++.+..+....
T Consensus 277 ~~---~~~~~~~~~~~~~~------------~~~--~~~~~----~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (382)
T PRK11128 277 AI---CGVVRWGLMGSTTA------------LPW--LIVIQ----ILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSA 335 (382)
T ss_pred HH---HHHHHHHHHHhhhh------------HHH--HHHHH----HHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHH
Confidence 33 34444443332211 111 11111 11233455555555555555666666665555443
Q ss_pred e----cccchhhHHHHHH
Q 012495 401 V----CNPLGKSGGALIQ 414 (462)
Q Consensus 401 l----~~r~Gk~~gs~i~ 414 (462)
+ +..+|..+|+.++
T Consensus 336 ~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 336 LAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4 4445566555555
No 15
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.52 E-value=1.3e-11 Score=125.39 Aligned_cols=263 Identities=12% Similarity=0.042 Sum_probs=157.2
Q ss_pred HHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 012495 6 LFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLS 85 (462)
Q Consensus 6 ~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~ 85 (462)
..+.....|.-|.+..+ .|.++++.+++.....+ ...+..+..|+++||+||||++........+..++.+..
T Consensus 18 ~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----- 90 (385)
T TIGR00710 18 PLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLL-GFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS----- 90 (385)
T ss_pred HHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHH-HHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----
Confidence 44566667776665444 56557788998887664 446889999999999999999887776665555444331
Q ss_pred cccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHH
Q 012495 86 NAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALI 165 (462)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i 165 (462)
.+.|...+.++..++......+ ...+++.|.+++||+.|.++...+..++|..
T Consensus 91 --------------------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 143 (385)
T TIGR00710 91 --------------------------NNIETLLVLRFVQAFGASAGSV-ISQALVRDIYPGEELSRIYSILMPVLALAPA 143 (385)
T ss_pred --------------------------ccHHHHHHHHHHHHcchhHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 1345555666666766555556 5889999999999999999999999999999
Q ss_pred hhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcH
Q 012495 166 FSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSR 245 (462)
Q Consensus 166 ~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~ 245 (462)
+|+.+...+.+. . +|.... ...........+..+. . . ||++++++++++....+.++.++++|
T Consensus 144 ~g~~~~~~l~~~---~-----~~~~~~---~~~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (385)
T TIGR00710 144 VAPLLGGYILVW---L-----SWHAIF---AFLSLAGILLSALIFF-I---L--PETLPYEARIQISTYFETFLLLLKSK 206 (385)
T ss_pred HHHHHHHHHHHH---c-----CHHHHH---HHHHHHHHHHHHHHHH-h---C--CCCCCCcccCCHHHHHHHHHHHHcCc
Confidence 988877765431 1 122111 0000111111111111 1 1 22221111111223356677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 246 YIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 246 yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
.+.........................++.++.+++.. |.+....++..++-..+.+++.+|+|.+......-.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~ 280 (385)
T TIGR00710 207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVF---GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLI 280 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 76555444333332222222222334444555444332 334555555555556778899999999887765533
No 16
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.51 E-value=4.2e-13 Score=134.10 Aligned_cols=271 Identities=15% Similarity=0.141 Sum_probs=160.4
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY 82 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~ 82 (462)
|+..++.++.-|.-+....++.|.++++++++.....++. .+..|..|+++||+||||++..+....++..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-- 82 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGS-ALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-- 82 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHH-HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--
Confidence 5666777777777774344446655788999998776544 6899999999999999999888887777663333221
Q ss_pred hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
.+.|...+.++..++......+ ...++++|.+++||+.|.++....+.++
T Consensus 83 -----------------------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (352)
T PF07690_consen 83 -----------------------------SNFWLLLIARFLLGIGSGFFSP-ASNALIADWFPPEERGRAFGILSAGFSL 132 (352)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCTCCHHHHHHHHHHHHHH
T ss_pred -----------------------------hhHHHHhhhccccccccccccc-cccccccccchhhhhhhccccccchhhh
Confidence 1456677777888888767777 5999999999999999999999999999
Q ss_pred HHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCccccc-cccC---CCCChHHH
Q 012495 163 ALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGL-YWWVNNNVELPTRSKK-KKEK---PKMGTMES 237 (462)
Q Consensus 163 G~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~-~~~~~~~~~~p~~~~~-~~~k---~~~~~~~~ 237 (462)
|.++|+.+...+.+.. +|...... . .+...+.... ..+..+.. ++++++ ++++ ++.+..+.
T Consensus 133 g~~~g~~l~~~l~~~~--------~~~~~~~~-~---~~~~~~~~il~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 198 (352)
T PF07690_consen 133 GSILGPLLGGFLISYF--------GWRWAFLI-S---AILSLIAAILFILFLPEPP--PPRERESPKESESKKPKPLKPG 198 (352)
T ss_dssp HHHHHHHHHHHCCCHC--------HHCCHHHH-H---HHHHHHHHHHHHCCC---S--TTTT--SSTTTT--HHHCCCH-
T ss_pred hhhcccchhhhhhhcc--------cccccccc-c---cchhhhhhhhHhhhhhhcc--cccccccccccccccccccccc
Confidence 9999998888765211 12111100 0 1111111111 00111111 111111 1111 11223345
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh-hhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHH
Q 012495 238 LKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSP-NEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVA 316 (462)
Q Consensus 238 l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~-~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~ 316 (462)
+|.++++|.+..+....+...............+.++.++.+ . ...+.+....++...+-..+.+++.+|+|.+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (352)
T PF07690_consen 199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGP---SQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRR 275 (352)
T ss_dssp CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 778888886543333333333333333343344334444433 2 222334455555554446778899999998766
Q ss_pred HHHHHHH
Q 012495 317 AKITPTV 323 (462)
Q Consensus 317 ~~i~P~~ 323 (462)
..+.-..
T Consensus 276 ~~~~~~~ 282 (352)
T PF07690_consen 276 LLIAILL 282 (352)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555553
No 17
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.51 E-value=2.2e-11 Score=122.82 Aligned_cols=246 Identities=15% Similarity=0.067 Sum_probs=154.9
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhC
Q 012495 23 AKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILG 102 (462)
Q Consensus 23 ~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~ 102 (462)
+.|-++++.+++.....+ ...+..|..|+++||+|||+++......+.....++++.
T Consensus 23 ~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------------------- 79 (399)
T TIGR00893 23 DLGLSAAQYGYVFSAFSW-GYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---------------------- 79 (399)
T ss_pred hhCCChhhHHHHHHHHHH-HHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----------------------
Confidence 355556788999887765 446899999999999999999888777666655555432
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCC
Q 012495 103 PRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLG 182 (462)
Q Consensus 103 ~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~g 182 (462)
.+.|...+.+++.++......+ ...++++|.+++||+.+.+++...+.++|.++|+.+...+.+. .|
T Consensus 80 ---------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~ 146 (399)
T TIGR00893 80 ---------GAYVSLYILRVLLGAAEAPFFP-GIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FS 146 (399)
T ss_pred ---------cCHHHHHHHHHHHHHHHHhhhh-HHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CC
Confidence 1456666777777777666666 5899999999999999999999999999999999888765431 11
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--ccccc------------ccCCCCChHHHHHHHhhcHHHH
Q 012495 183 PGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPT--RSKKK------------KEKPKMGTMESLKFLVSSRYIR 248 (462)
Q Consensus 183 p~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~--~~~~~------------~~k~~~~~~~~l~~i~~s~yl~ 248 (462)
|...... .........+..+...++..+.++ +++++ +++++....+..+..+++|.+.
T Consensus 147 -----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (399)
T TIGR00893 147 -----WQWAFII---EGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVW 218 (399)
T ss_pred -----chHHHHH---HHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHH
Confidence 2211100 001111111111111222111110 00000 0011112234567778888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhH
Q 012495 249 DLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGV 315 (462)
Q Consensus 249 ~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~ 315 (462)
.++...+++....+.+......+.++..+.+++..+. .....++..++-..+.+++.+|+|-+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGF---MASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7777777777777777777777777766654433333 344445555444566778888888875
No 18
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.51 E-value=3e-11 Score=124.51 Aligned_cols=128 Identities=9% Similarity=-0.019 Sum_probs=101.3
Q ss_pred hccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchH
Q 012495 14 DTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQAL 93 (462)
Q Consensus 14 ~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~ 93 (462)
++.+.+..+ +|-++++.++..+.... ...+..|..|+++||+||||++......+++..++.++.
T Consensus 41 ~~l~~~~~~-~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------- 105 (394)
T PRK10213 41 SLLTPMAQD-LGISEGVAGQSVTVTAF-VAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------- 105 (394)
T ss_pred hhHHHHHHH-cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 344444333 55557888988876654 456789999999999999999999888887766555431
Q ss_pred HHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 94 ADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
.+.|...+.+++.++.+....+ ...++++|.+++||+.|..+....+.++|.++|+.+...
T Consensus 106 ------------------~~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~ 166 (394)
T PRK10213 106 ------------------NSFSLLLIGRACLGLALGGFWA-MSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSF 166 (394)
T ss_pred ------------------ChHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1467777888888888777767 589999999999999999999999999999999988877
Q ss_pred hh
Q 012495 174 FS 175 (462)
Q Consensus 174 l~ 175 (462)
+.
T Consensus 167 l~ 168 (394)
T PRK10213 167 LG 168 (394)
T ss_pred HH
Confidence 65
No 19
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.48 E-value=1.8e-11 Score=126.76 Aligned_cols=262 Identities=13% Similarity=0.099 Sum_probs=151.6
Q ss_pred HHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 012495 6 LFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLS 85 (462)
Q Consensus 6 ~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~ 85 (462)
.++.++.-+.-+.+..+ .+.++.+.+++.....++. ++..|..|+++||+||||++......+...+...+...+
T Consensus 30 ~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~-~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~--- 104 (417)
T PRK10489 30 IFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAM-FIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF--- 104 (417)
T ss_pred HHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHH-HHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH---
Confidence 34445555555555444 4445778899998777655 689999999999999999988776666555544433211
Q ss_pred cccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHH
Q 012495 86 NAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALI 165 (462)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i 165 (462)
..++ +.|...+.++..++.+....+ ...+.+.|.+++||+.|..++...+.++|.+
T Consensus 105 -~~~~----------------------~~~~l~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (417)
T PRK10489 105 -LPEP----------------------SLLAIYLLGLWDGFFGSLGVT-ALLAATPALVGRENLMQAGAITMLTVRLGSV 160 (417)
T ss_pred -cCCC----------------------cHHHHHHHHHHHHHHHHHHHH-HHhhhhhhccCHHHHHHHHHHHHHHHhHHHH
Confidence 0011 245555566666666555555 4678899999999999999999999999999
Q ss_pred hhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc--ccccCCCCChHHHHHHHhh
Q 012495 166 FSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSK--KKKEKPKMGTMESLKFLVS 243 (462)
Q Consensus 166 ~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~--~~~~k~~~~~~~~l~~i~~ 243 (462)
+|+.+.+.+.+. .| |...+ .+.+...+........ . |+.++ ++++++..+..++++.+++
T Consensus 161 ~g~~l~g~l~~~---~~-----~~~~~-------~~~~~~~~~~~~~~~~-l--~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (417)
T PRK10489 161 ISPALGGLLIAA---GG-----VAWNY-------GLAAAGTFITLLPLLR-L--PALPPPPQPREHPLRSLLAGFRFLLA 222 (417)
T ss_pred hHHHHHHHHHHH---Hh-----hHHHH-------HHHHHHHHHHHHHHHh-C--CCCCCCCcccccchHHHHHHHHHHHc
Confidence 888877665421 11 11111 1111111111100111 1 22111 1111122345677888899
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHH
Q 012495 244 SRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAK 318 (462)
Q Consensus 244 s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~ 318 (462)
+|.++......+..... +..+.....+.++.++.+++. .|.+....++..++...+.+++.+|.+.+....
T Consensus 223 ~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~---~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~ 293 (417)
T PRK10489 223 SPVVGGIALLGGLLTMA-SAVRVLYPALADEVWQMGAAQ---IGLLYAAVPLGAALGALTSGWLAHSARPGLLML 293 (417)
T ss_pred ChHHHHHHHHHHHHHHH-HhHHHhhHHHHHhccCCChhH---hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHH
Confidence 99876655444333322 234555555666655554433 333455555555555566778888766554443
No 20
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.46 E-value=5.4e-11 Score=120.42 Aligned_cols=141 Identities=9% Similarity=0.059 Sum_probs=93.6
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHH-HHHHHHHHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTV-IVPFIAFFGAFGFL 80 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~-l~~f~~~~~lf~~~ 80 (462)
.|+..+++++..|.-+....++.|.++++.+++.....+ .+.+..|..|+++||+||||.+... .....+...++++.
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAI-VGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 366778888999988876666567667889998886654 4568899999999999998875543 33333333333220
Q ss_pred HhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhh--hhhhhh
Q 012495 81 LYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRF--YPLFGL 158 (462)
Q Consensus 81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~--fgli~a 158 (462)
+ +.|...+..+..+.......+ ...++..|..+++++.|. .+....
T Consensus 85 ---------~----------------------~~~~l~~~~~~~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (375)
T TIGR00899 85 ---------R----------------------NYFLLLVLGVLLSSFASTANP-QLFALAREHADRTGREAVMFSSVMRA 132 (375)
T ss_pred ---------c----------------------hHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 1 233333333333444444555 477888888876665543 688888
Q ss_pred HHHHHHHhhhhhHHHhh
Q 012495 159 GANVALIFSGRTVKYFS 175 (462)
Q Consensus 159 g~~lG~i~gg~~~~~l~ 175 (462)
+.++|.++|+.+...+.
T Consensus 133 ~~~~g~~ig~~~~~~l~ 149 (375)
T TIGR00899 133 QISLAWVIGPPLAFWLA 149 (375)
T ss_pred HHhHHHHHhhhHHHHHH
Confidence 89999998888777654
No 21
>PRK10504 putative transporter; Provisional
Probab=99.46 E-value=1.8e-10 Score=121.14 Aligned_cols=352 Identities=15% Similarity=0.110 Sum_probs=196.2
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL 81 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l 81 (462)
+|+..+.++.+-+.-|.+..+ .|.++++..++...+.+ ...+..|..|+++||+||||++......++...+++++.
T Consensus 19 ~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~- 95 (471)
T PRK10504 19 FFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVL-TVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS- 95 (471)
T ss_pred HHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-
Confidence 355666677777877777655 67667778888776654 445789999999999999999887777666665544431
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGAN 161 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~ 161 (462)
+ +.|...+.+++.++......+ ...+.+.|.++.+++.+.++..+.+.+
T Consensus 96 --------~----------------------~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (471)
T PRK10504 96 --------G----------------------TLNELLLARVLQGVGGAMMVP-VGRLTVMKIVPREQYMAAMTFVTLPGQ 144 (471)
T ss_pred --------C----------------------CHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 1 234455566777776666666 588999999999999999999999999
Q ss_pred HHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc-----------------
Q 012495 162 VALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSK----------------- 224 (462)
Q Consensus 162 lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~----------------- 224 (462)
+|..+|+.+.+.+.+. . +|...+....+. ...+.+ ......++....++..+
T Consensus 145 ~g~~~g~~~~g~l~~~---~-----gw~~~f~~~~~~-~~l~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 213 (471)
T PRK10504 145 VGPLLGPALGGLLVEY---A-----SWHWIFLINIPV-GIIGAI--ATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLA 213 (471)
T ss_pred HHHHhhhHHHHHHHhh---c-----cHHHHHHHHHHH-HHHHHH--HHHHhCCCccccCCCCChHHHHHHHHHHHHHHHH
Confidence 9999988887766431 1 233222111111 111111 11111111100000000
Q ss_pred -cc---------------------------ccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 012495 225 -KK---------------------------KEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQF 276 (462)
Q Consensus 225 -~~---------------------------~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~ 276 (462)
.+ ++++.....-.++ ++|+|.....+...+++.......+.....+.+...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (471)
T PRK10504 214 LDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGL 292 (471)
T ss_pred HhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00 0000001111233 567787777777677776666655555555666555
Q ss_pred CChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHH
Q 012495 277 PSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAA 356 (462)
Q Consensus 277 ~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~~ 356 (462)
+.++....+. ....++..+.-..+.+++.+|+|-++...+.-++. +++...+.+.... ..... .+ ...
T Consensus 293 g~~~~~~g~~---~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~----~~-~~~ 360 (471)
T PRK10504 293 GFSPFHAGLM---MIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGL---ALVSLLFMLVALL-GWYYL----LP-FVL 360 (471)
T ss_pred CCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH---HHHHHHHHhcccc-ccHHH----HH-HHH
Confidence 5555443332 33333333334466889999999998876665532 2222222222110 00000 00 001
Q ss_pred HHHHHHHHHHHHhhhhhcc-ccchhhccccCCchhhhccceeeeeecccchhhHHHHHHHHHHHHh
Q 012495 357 VYVGAMQNIFSKSAKYSLF-DPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTF 421 (462)
Q Consensus 357 v~~g~~~~~~~k~~~ysl~-~p~ke~l~~~l~~~~r~k~K~~iD~l~~r~Gk~~gs~i~~~l~~~~ 421 (462)
+..|. ..++. -+...+...-.|+|+|...-+ ......++|..+|..+...+....
T Consensus 361 ~~~g~---------~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 361 FLQGM---------VNSTRFSSMNTLTLKDLPDNLASSGNS-LLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHcCCHHhccchHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 12221 122233334456666666655 458888888888888776655444
No 22
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.45 E-value=5.7e-10 Score=113.53 Aligned_cols=365 Identities=18% Similarity=0.123 Sum_probs=217.5
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY 82 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~ 82 (462)
|++...-.+.-++.+.+.-+ +|-+..+-+++.+.+.+.. .+..|....+.||++||+++...+..|.+.-++.++.
T Consensus 23 F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~-ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA-- 98 (394)
T COG2814 23 FAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGV-ALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA-- 98 (394)
T ss_pred HHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh--
Confidence 33334444444455544444 4444567899999888755 5899999999999999999999999999888777753
Q ss_pred hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
| ++|...+-++..++-.....+ +-.+.+.|+.+++|+.|-.+++..|.++
T Consensus 99 -------p----------------------~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tl 148 (394)
T COG2814 99 -------P----------------------SFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTL 148 (394)
T ss_pred -------c----------------------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHH
Confidence 2 577888888999998877788 5999999999999999999999999999
Q ss_pred HHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHh
Q 012495 163 ALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLV 242 (462)
Q Consensus 163 G~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~ 242 (462)
+.++|..+..++.+.. ||- ..+ .+.+.+.+....++.+..| |++ .+++++.++.+-++.+.
T Consensus 149 A~v~GvPLGt~ig~~~--------GWR------~~F-~~ia~l~ll~~~~~~~~lP-~~~---~~~~~~~~~~~~~~~l~ 209 (394)
T COG2814 149 ATVLGVPLGTFLGQLF--------GWR------ATF-LAIAVLALLALLLLWKLLP-PSE---ISGSLPGPLRTLLRLLR 209 (394)
T ss_pred HHHHhccHHHHHHHHh--------hHH------HHH-HHHHHHHHHHHHHHHHhCC-Ccc---CCCCCCcchhHHHHHhc
Confidence 9999988777765322 222 222 2222222333323444443 221 12222234445555444
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHH
Q 012495 243 SSRYIRDLATLVVAYGISINLVEVTW-KSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITP 321 (462)
Q Consensus 243 ~s~yl~~l~~~v~~~~~~~~l~e~~~-~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P 321 (462)
|-+....+....+.++-.. .-++| .-+.++..+-++ +..+......|+..++--.+.+|+.+| +.+.++...|
T Consensus 210 ~p~v~~~l~~t~l~~~g~F--~~ftYi~P~L~~v~g~s~---~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~ 283 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHF--ALYTYIRPFLESVAGFSV---SAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAAL 283 (394)
T ss_pred CchHHHHHHHHHHHHcchh--hhHHhHHHHHHHccCCCH---hHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHH
Confidence 4444444444444433333 33333 334444444333 233445666777776566778999999 9999999888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccCC---chhhhccceee
Q 012495 322 TVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLD---EDTKVKGKAAI 398 (462)
Q Consensus 322 ~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~---~~~r~k~K~~i 398 (462)
..+....+ .+.+..++ +... .....+.|. .. -|.-+..-+.+. ||.+...-+ .
T Consensus 284 ~l~a~~~l---~l~~~~~~--~~~~------~~~~~~wg~---------a~---~~~~~~~~~~~a~~~p~~~~~a~s-l 339 (394)
T COG2814 284 LLLALALL---ALTFTGAS--PALA------LALLFLWGF---------AF---SPALQGLQTRLARLAPDAADLAGS-L 339 (394)
T ss_pred HHHHHHHH---HHHHhcch--HHHH------HHHHHHHHH---------Hh---hhhhhHHHHHhcccCCCchHHHHH-H
Confidence 86543332 23322111 1000 001111111 22 233333334333 366655444 3
Q ss_pred eeecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhhhccc
Q 012495 399 DVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGDTFGDCSCMVRSSQVFRYP 452 (462)
Q Consensus 399 D~l~~r~Gk~~gs~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~~~~~~~~~ 452 (462)
..-...+|-.+|+++.....--++ -...++...+....+..|...+.+.+++
T Consensus 340 ~~aa~nlgia~GA~lGG~v~~~~g--~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 340 NVAAFNLGIALGAALGGLVLDALG--YAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344455677777776654433322 2345566667777777777777766543
No 23
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.45 E-value=1.3e-10 Score=119.98 Aligned_cols=140 Identities=11% Similarity=0.188 Sum_probs=106.4
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY 82 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~ 82 (462)
|+...+++.+-|.-+..+.+..|-++.+++++.....++. .+..|..|+++||+|||+++...........+++++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~-~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-- 96 (400)
T PRK11646 20 MLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQ-QGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--
Confidence 4666777777888776665656666788898888766554 5678999999999999999988887777766655431
Q ss_pred hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
+ +.|...+.+++.++......+ ...+.++|.+++|++.|.+++...+.++
T Consensus 97 -------~----------------------~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 146 (400)
T PRK11646 97 -------H----------------------EPWLLWLSCILSGLGGTLFDP-PRTALVIKLIRPHQRGRFFSLLMMQDSA 146 (400)
T ss_pred -------c----------------------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 1 335555556666665544445 4778899999999999999999999999
Q ss_pred HHHhhhhhHHHhh
Q 012495 163 ALIFSGRTVKYFS 175 (462)
Q Consensus 163 G~i~gg~~~~~l~ 175 (462)
|..+|+.+.+.+.
T Consensus 147 g~~ig~~l~g~l~ 159 (400)
T PRK11646 147 GAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887664
No 24
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.44 E-value=7.9e-10 Score=113.33 Aligned_cols=261 Identities=8% Similarity=-0.010 Sum_probs=144.0
Q ss_pred HHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 012495 6 LFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLS 85 (462)
Q Consensus 6 ~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~ 85 (462)
..+..+.-+.-+.+..+ .|.++++..+..+...+.. .+..|..|+++||+||||++......+.+...+.+..
T Consensus 16 ~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~-~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~----- 88 (392)
T PRK10473 16 PAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGM-AAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA----- 88 (392)
T ss_pred HHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHH-HHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----
Confidence 33444444555555444 5554667888887766444 5788999999999999999887776666655444321
Q ss_pred cccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHH
Q 012495 86 NAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALI 165 (462)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i 165 (462)
+ +.|.....+.+.++....... ..+++++|.+++||+.|..+......++|.+
T Consensus 89 ----~----------------------~~~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~ 141 (392)
T PRK10473 89 ----E----------------------TSSLFLAGRFLQGIGAGCCYV-VAFAILRDTLDDRRRAKVLSLLNGITCIIPV 141 (392)
T ss_pred ----C----------------------cHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 1 234444455566655445555 5889999999999999999999999999988
Q ss_pred hhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcH
Q 012495 166 FSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSR 245 (462)
Q Consensus 166 ~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~ 245 (462)
+|+.+...+.+ .. +|...... ....+....+..+... ||++++++ +++.+..+..+..+++|
T Consensus 142 ~~~~i~~~l~~---~~-----g~~~~~~~---~~~~~~i~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~ 203 (392)
T PRK10473 142 LAPVLGHLIML---KF-----PWQSLFYT---MAAMGILVLLLSLFIL------KETRPARA-PAASSKPRENSESLLNR 203 (392)
T ss_pred HHHHHHHHHHh---Cc-----ChHHHHHH---HHHHHHHHHHHHHHHc------CCCCCccc-CCccchHHHHHHHHhCH
Confidence 88777665432 11 22211100 0011111111111112 22111111 11112233444556666
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 246 YIRDLATLV-VAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 246 yl~~l~~~v-~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
......... +....... ..........+.++.+++. .+......++..++-.++.+++.||+|-++...+.-.
T Consensus 204 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~ 277 (392)
T PRK10473 204 FFLSRLVITTLSVTVILT-FVNTSPVLLMEQMGFSRGE---YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQV 277 (392)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCHHHHHHHcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 543332222 22222221 2222223334444433322 2334555666665545677899999999887765554
No 25
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.42 E-value=5.4e-12 Score=125.40 Aligned_cols=276 Identities=13% Similarity=0.148 Sum_probs=169.8
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSN 86 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~ 86 (462)
+.|..+|+...+...+. +.++..-+++-.. +..+|++.+|.+|+++||+|||+++..++.+-+++|++++.-
T Consensus 47 ~~~~~V~~F~~a~~~~~-~~~~~yaGflGSs-F~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S------ 118 (451)
T KOG2615|consen 47 FVVFMVRDFNIAIGEPD-GASVFYAGFLGSS-FSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS------ 118 (451)
T ss_pred HHHHhhHHHHHhhCCcc-cccchhhhhHhhH-HHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH------
Confidence 56777787777766662 2223445667664 457999999999999999999999999999999999988862
Q ss_pred ccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHH
Q 012495 87 AIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF-YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALI 165 (462)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~f-yv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i 165 (462)
++..+.+. +...++++ -+++ ..-+++.|+.++|++.+.++.++.+.++|+|
T Consensus 119 --------------------------~~F~afv~aR~l~Gi~k-gnl~-v~rAiisdV~sek~r~l~ms~v~~a~~lGfi 170 (451)
T KOG2615|consen 119 --------------------------RNFAAFVLARFLGGIFK-GNLS-VIRAIISDVVSEKYRPLGMSLVGTAFGLGFI 170 (451)
T ss_pred --------------------------HHHHHHHHHHHhhhhcc-CchH-HHHHHHHhhcChhhccceeeeeehhhhcchh
Confidence 22222233 67888987 6889 5999999999999999999999999999999
Q ss_pred hhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc--------ccccCCCCCh--H
Q 012495 166 FSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSK--------KKKEKPKMGT--M 235 (462)
Q Consensus 166 ~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~--------~~~~k~~~~~--~ 235 (462)
+|+++.++++...+..|. ...-+.-+....+.++.+.... +++.+..+..++.+ .+.+++..++ .
T Consensus 171 lGPmIGgyla~f~~~~g~----~p~alP~~~v~i~a~~~v~~~~-~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~ 245 (451)
T KOG2615|consen 171 LGPMIGGYLAQFSSISGS----YPFALPCLLVFILAAGDVTFFP-WFLPETLPLRKRNDEHSTLQEAADDRLALLKFARI 245 (451)
T ss_pred hcchhhhHHHhhHhhhcc----CchHHHHHHHHHHHHHHHHHHH-HhCCccccchhhcccccchhhhhhhhhhhcchhhh
Confidence 999999888762211221 0011111111112222122222 23444432211110 0000000011 1
Q ss_pred HHHHHHhhcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHH-HHHHhhHHHH
Q 012495 236 ESLKFLVSSRY------IRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATF-TMMLLSQFVF 308 (462)
Q Consensus 236 ~~l~~i~~s~y------l~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l-~q~~l~~~li 308 (462)
+....+...|. ..-+...-+.|.......|+.-.....+++..+++.+ |.+...+|+... +|+.+.+++=
T Consensus 246 ~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~---G~vl~~tGl~m~~~ql~~~~~l~ 322 (451)
T KOG2615|consen 246 FKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQ---GKVLSTTGLLMLVIQLALVPILP 322 (451)
T ss_pred hhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhh---eeeeehhhHHHHHHHHhcccccc
Confidence 11112222221 2223444455555555566665555556676666333 567888999884 5999998887
Q ss_pred HHhchhHHHHHHHHHHHH
Q 012495 309 DKFGWGVAAKITPTVLLL 326 (462)
Q Consensus 309 ~r~G~~~~~~i~P~~~l~ 326 (462)
+..|...+.+..++.+++
T Consensus 323 ~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 323 RYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred ccccchhhHHHHHHHHHH
Confidence 777776666666664333
No 26
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.42 E-value=3.1e-10 Score=116.45 Aligned_cols=253 Identities=12% Similarity=0.076 Sum_probs=149.1
Q ss_pred hhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012495 4 CILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYP 83 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p 83 (462)
+..+.+++.-|.-|.+..+ .|-++++..++.....++. .+..+..|+++||+|||+++...........+++...
T Consensus 19 ~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~-~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--- 93 (394)
T PRK11652 19 VGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTY-GLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--- 93 (394)
T ss_pred HHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHH-HHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---
Confidence 4445566666666655533 5655778898888776555 6889999999999999999887766555544433321
Q ss_pred cccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHH
Q 012495 84 LSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVA 163 (462)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG 163 (462)
+ +.|...+.+++.++......+ ....+..|.++.+|+.+..+....+..+|
T Consensus 94 ------~----------------------~~~~l~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (394)
T PRK11652 94 ------H----------------------SLTVLIAASAIQGLGTGVGGV-MARTLPRDLYEGTQLRHANSLLNMGILVS 144 (394)
T ss_pred ------c----------------------cHHHHHHHHHHHHhhhhHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 1 234444555666655434444 46778899999999999999999999999
Q ss_pred HHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhh
Q 012495 164 LIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVS 243 (462)
Q Consensus 164 ~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~ 243 (462)
..+|+.+...+.+. . +|..... ...+.+.+..... .... ||+++++++ +.+..++++.+.|
T Consensus 145 ~~~g~~i~~~l~~~---~-----g~~~~f~----~~~~~~~~~~~~~---~~~~--~~~~~~~~~--~~~~~~~~~~~~~ 205 (394)
T PRK11652 145 PLLAPLIGGLLTTL---F-----GWRACYL----FLLLLGAGVTFSM---ARWM--PETRPADAR--RTRVLASYRTLLS 205 (394)
T ss_pred HHHHHHHHHHHHhc---c-----ChHHHHH----HHHHHHHHHHHHH---HHhC--CccCccccc--hhHHHHHHHHHHc
Confidence 98888777665421 1 2221110 1011111111111 1111 332211111 1225678888889
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhc
Q 012495 244 SRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFG 312 (462)
Q Consensus 244 s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G 312 (462)
+|.+.......+.........+.......++.++.++.. .|.+.....+..++-..+.+++.+|.|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~g~~~~~~l~~~~~ 271 (394)
T PRK11652 206 NRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMT---VSILFILPIPAAFFGAWFAGRPNKRFS 271 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987665444444444455555655555666655544422 232333333333445567788888888
No 27
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.41 E-value=3e-10 Score=117.94 Aligned_cols=239 Identities=10% Similarity=0.018 Sum_probs=137.2
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
+|.+.+..++....+.+ ...+..+..|.++||+||||++......+.+...+.++. +
T Consensus 46 ~~~~~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------~------------- 102 (413)
T PRK15403 46 FNADVSLAPASVSLYLA-GGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT---------T------------- 102 (413)
T ss_pred hCCCHHHHHHHHHHHHH-HHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc---------C-------------
Confidence 45445667777776654 445788999999999999999988877766655444431 1
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCC
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGP 183 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp 183 (462)
+.|...+.++..++....... ..+..+.|.++.+|+.|.++.++.+.++|.++|+.+...+.+. .
T Consensus 103 ---------~~~~l~~~r~l~Gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~-- 167 (413)
T PRK15403 103 ---------SMTQFLIARFIQGTSICFIAT-VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---V-- 167 (413)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--
Confidence 345555666666665544334 4678999999999999999999999999999988777655421 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccc-cCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 012495 184 GVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKK-EKPKMGTMESLKFLVSSRYIRDLATLVVAYGISIN 262 (462)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~-~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~ 262 (462)
+|...+. ...+.+.+.... .... .||++++++ +.++.+..+..+.++|+|.+...+....+......
T Consensus 168 ---gw~~~f~----~~~~~~~i~~~~---~~~~--lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~ 235 (413)
T PRK15403 168 ---HWKVLFA----IIAVMGLIAFVG---LLLA--MPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMM 235 (413)
T ss_pred ---CHHHHHH----HHHHHHHHHHHH---HHHh--CCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 2322110 001111111111 1111 244322111 11122446778889999987776666555555443
Q ss_pred HHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHH-hchhH
Q 012495 263 LVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDK-FGWGV 315 (462)
Q Consensus 263 l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r-~G~~~ 315 (462)
........+.++.++.+++... ..........++-..+.+++.++ .+.+.
T Consensus 236 ~~~~~~P~~l~~~~g~s~~~~g---l~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 236 SWVAVSPVILIDAGGMTTSQFA---WTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHhChHHHHHhcCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 3444444566666654443322 22332333333233445555544 34443
No 28
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.40 E-value=1.2e-09 Score=111.68 Aligned_cols=139 Identities=10% Similarity=0.098 Sum_probs=105.9
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY 82 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~ 82 (462)
|+.....+++-|..+.+..+ .|.+.++.+++.....+.. .+..|..|+++||+|||+++......++....++++.
T Consensus 16 ~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~-~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-- 91 (381)
T PRK03633 16 LLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGN-LVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM-- 91 (381)
T ss_pred HHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 34556667777777776655 5655788999999777544 6889999999999999999988888777766555431
Q ss_pred hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
.+.|...+.+++.++......+ ..-+.++|..+++|+.|.++....+.++
T Consensus 92 -----------------------------~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (381)
T PRK03633 92 -----------------------------VGFWSWLAWRFVAGIGCAMIWV-VVESALMCSGTSRNRGRLLAAYMMVYYL 141 (381)
T ss_pred -----------------------------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1456666677777776554444 3556678889999999999999999999
Q ss_pred HHHhhhhhHHHhh
Q 012495 163 ALIFSGRTVKYFS 175 (462)
Q Consensus 163 G~i~gg~~~~~l~ 175 (462)
|..+|+.+...+.
T Consensus 142 g~~~g~~~~~~l~ 154 (381)
T PRK03633 142 GTVLGQLLVSKVS 154 (381)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887654
No 29
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.39 E-value=7.2e-10 Score=113.01 Aligned_cols=135 Identities=13% Similarity=0.029 Sum_probs=99.2
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSN 86 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~ 86 (462)
+.....-++.+.+..+ +|-++++..++...... ...+..|..|+++||+|||+++........+..++.++.
T Consensus 26 ~~~~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~-~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~------ 97 (405)
T TIGR00891 26 FDFFLVALVLAEVAGE-FGLTTVDAASLISAALI-SRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA------ 97 (405)
T ss_pred HHHHHHHHHHHHHHHH-hCCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------
Confidence 3444455555555433 55556778888886664 446899999999999999999887766665555444331
Q ss_pred ccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHh
Q 012495 87 AIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIF 166 (462)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~ 166 (462)
+ +.|...+.+++.++......+ ...++++|.+++||+.|..+....+.++|.++
T Consensus 98 ---~----------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 98 ---P----------------------GYITMFIARLVIGIGMGGEYG-SSAAYVIESWPKHLRNKASGLLISGYAVGAVV 151 (405)
T ss_pred ---c----------------------cHHHHHHHHHHHHhhhhhhhH-HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH
Confidence 1 345556666777776555556 48899999999999999999999999999999
Q ss_pred hhhhHHHhh
Q 012495 167 SGRTVKYFS 175 (462)
Q Consensus 167 gg~~~~~l~ 175 (462)
|+.+...+.
T Consensus 152 ~~~l~~~l~ 160 (405)
T TIGR00891 152 AAQVYSLVV 160 (405)
T ss_pred HHHHHHHHH
Confidence 998877654
No 30
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.39 E-value=4.6e-10 Score=116.36 Aligned_cols=277 Identities=13% Similarity=0.171 Sum_probs=142.1
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL 81 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l 81 (462)
+|+..++++..-|.-.....++.|-++++++.+.....+ ...+..|..|+++||+||||++.+....+......+....
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l-~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 97 (420)
T PRK09528 19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSL-FALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYV 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777788887777666566557889999987665 5578999999999999999998776555443322111100
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--hhhhhhhhhhhhhH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITT--VDEAKRFYPLFGLG 159 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~--~~qakR~fgli~ag 159 (462)
+ .. ....+.+.. .. ..+++...... .....+++..+ .++..+.++...++
T Consensus 98 ~------------~~------------~~~~~~~~~--~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~ 149 (420)
T PRK09528 98 F------------AP------------LLQYNILLG--AI-VGGIYLGFGFL-AGAGAIEAYIERVSRRSGFEYGRARMW 149 (420)
T ss_pred H------------HH------------HHHHHHHHH--HH-HHHHHhhhhhc-cchhhhhhHHHHHHhhccccchhhHHh
Confidence 0 00 000011110 00 11111101111 01112233332 23344578888899
Q ss_pred HHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc---cccccCCCCChHH
Q 012495 160 ANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRS---KKKKEKPKMGTME 236 (462)
Q Consensus 160 ~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~---~~~~~k~~~~~~~ 236 (462)
+++|..+|+.+.+.+.+ .++ .... .. ..+.+.+++......++. .|++. ++++++++....+
T Consensus 150 ~~~g~~i~~~~~g~l~~----~~~-----~~~f--~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 214 (420)
T PRK09528 150 GSLGWALCAFIAGILFN----INP-----QINF--WL--GSGSALILLVLLFFAKPD--APSTAKVANALGANASAVSLK 214 (420)
T ss_pred hhHHHHHHHHHHHHHHh----cCc-----hHhH--HH--HHHHHHHHHHHHhccccc--ccchhhhccchhcccccccHH
Confidence 99999998888776642 111 1111 00 011111222122111111 11111 0111111222344
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHH
Q 012495 237 SLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVA 316 (462)
Q Consensus 237 ~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~ 316 (462)
..+..+|+|.+..+++..+.........+..+..+..+.+.+.+.-....|...+..++...+-.+..+++.+|+|-++.
T Consensus 215 ~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 294 (420)
T PRK09528 215 DALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA 294 (420)
T ss_pred HHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence 55667788876555555555555555555556666665543322111333444555555444456678899999999987
Q ss_pred HHHHHH
Q 012495 317 AKITPT 322 (462)
Q Consensus 317 ~~i~P~ 322 (462)
....-+
T Consensus 295 ~~~~~~ 300 (420)
T PRK09528 295 LLLAGT 300 (420)
T ss_pred hHHHHH
Confidence 655444
No 31
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.39 E-value=7.7e-10 Score=113.76 Aligned_cols=278 Identities=13% Similarity=0.152 Sum_probs=149.5
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL 81 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l 81 (462)
.|+...+++..-|.-+....++.|-++++.+.+.....+ ...+..|..|+++||+||||.+..+...++..+..+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l-~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 89 (396)
T TIGR00882 11 FFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISL-FSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYV 89 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777788888888877766566557888888887664 5578999999999999999999877666554333222111
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWS-FCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGA 160 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~-~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~ 160 (462)
. ++. . ..+.|. ..+.++..++......+ ..-+++.|.. ++.++.++.....+
T Consensus 90 ~------~~~-------------~-----~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~--~~~~~~~g~~~~~~ 142 (396)
T TIGR00882 90 F------GPL-------------L-----QSNILVGAIVGGLYLGFVFSAGAG-AIEAYIEKVS--RNSNFEYGKARMFG 142 (396)
T ss_pred h------hhH-------------H-----HHHHHHHHHHHHHHHHHHhccchh-hHHHHHHHhh--hhcccccchhhhhc
Confidence 0 010 0 001111 11112222222212222 1223344432 22345788888999
Q ss_pred HHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc-ccc--cCCCCChHHH
Q 012495 161 NVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSK-KKK--EKPKMGTMES 237 (462)
Q Consensus 161 ~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~-~~~--~k~~~~~~~~ 237 (462)
++|..+|+.+.+.+.+ .| |...+. ...+.+.+.........+. .|++++ +++ ++++....+.
T Consensus 143 ~~g~~~g~~~~g~l~~----~~-----~~~~f~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 207 (396)
T TIGR00882 143 CVGWALCASIAGILFS----ID-----PQIVFW----LGSGFALILMLLLMFAKPK--APSSATVANALGANASAFSLKL 207 (396)
T ss_pred ccHHHHHHHHHhhhhc----cC-----chHHHH----HHHHHHHHHHHHHHHhCCC--CchhhhhhcccccccCCCCHHH
Confidence 9999998888776532 22 111110 0011111111111111111 111111 110 1111122345
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHH
Q 012495 238 LKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAA 317 (462)
Q Consensus 238 l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~ 317 (462)
++.++|+|.+..++...+......+..+..+..+.++.+.+++.-.+..|......++...+-....+++.||+|-++..
T Consensus 208 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l 287 (396)
T TIGR00882 208 ALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNAL 287 (396)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 67778888766666666666666667777777777776643221113334445554455444456678999999999876
Q ss_pred HHHHH
Q 012495 318 KITPT 322 (462)
Q Consensus 318 ~i~P~ 322 (462)
.+.-+
T Consensus 288 ~~~~~ 292 (396)
T TIGR00882 288 LIAGT 292 (396)
T ss_pred HHHHH
Confidence 54433
No 32
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.37 E-value=4.5e-10 Score=113.51 Aligned_cols=253 Identities=12% Similarity=0.117 Sum_probs=150.1
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccc-----CchhHH-HHHHHHHHHHHHHHHHHHhhcccccCCchHHHHH
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKL-----SKQALF-YTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKL 97 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~-----~r~~v~-~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~ 97 (462)
+|-+.++++++... .+|.. ..+++|.++||+ ||||.+ ..+....++.....++. ++.
T Consensus 18 ~g~s~~~~g~~~~~-~~~~~--~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~--------~~~------ 80 (356)
T TIGR00901 18 KNVSLKTIGFFSLV-GLPYS--LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL--------VPS------ 80 (356)
T ss_pred cCCCHHHHHHHHHH-HHHHH--HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC--------Ccc------
Confidence 45456788888654 45553 499999999998 888864 44444444443333321 111
Q ss_pred hhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhh
Q 012495 98 LNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNL 177 (462)
Q Consensus 98 ~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~ 177 (462)
.+.|.....++..+......-. ...+++.|.+++||+.+..++..++.++|.++|+.+...+...
T Consensus 81 --------------~~l~~l~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~ 145 (356)
T TIGR00901 81 --------------TDLPLLAGLAFLIAFFSATQDI-ALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP 145 (356)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1345556666666766655544 5899999999999999999999999999999999888766532
Q ss_pred hccCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHH---HHHHH
Q 012495 178 RKNLGP---GVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRY---IRDLA 251 (462)
Q Consensus 178 ~~~~gp---~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~y---l~~l~ 251 (462)
.|. ...+|.... .+.+...+..........++|++.++++++++.+..++++.++++|. +..+.
T Consensus 146 ---~g~~~~~~~~wr~~f-------~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (356)
T TIGR00901 146 ---EFANTGLITLWGYIF-------FWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLL 215 (356)
T ss_pred ---cccccccccccHHHH-------HHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 221 001133221 11221111111111111111221111111111234577888888875 55555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 252 TLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 252 ~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
...+++.......+.....+.++ .+.++ +..|......+... +++.++.+++.+|+|.++.+...-+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~-~g~~~---~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~ 283 (356)
T TIGR00901 216 LLIVLYKLGDSAATVLTTLFLLD-MGFSK---EEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGI 283 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCCH---HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55666677666677777777776 44444 22344455556544 5577888999999998888654444
No 33
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.37 E-value=3e-09 Score=109.43 Aligned_cols=118 Identities=11% Similarity=-0.009 Sum_probs=90.0
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|.++++.+++.....+.. .+..+..|+++||+|||+++........+..++.++. +
T Consensus 45 ~~~s~~~~g~~~~~~~~~~-~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------~------------- 101 (406)
T PRK11551 45 FGLDVAQMGWAFSAGILGL-LPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA---------W------------- 101 (406)
T ss_pred hCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---------c-------------
Confidence 5555788999988776544 6789999999999999999888766555544433321 1
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
+.|...+.++..++-.....+ ...++++|.+++|++.+.+++...+.++|..+++.+...+
T Consensus 102 ---------~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 102 ---------DFPSLLVARLLTGVGLGGALP-NLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred ---------cHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777776656666 5899999999999999999999999999999988776544
No 34
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.37 E-value=8.5e-10 Score=110.92 Aligned_cols=246 Identities=13% Similarity=0.013 Sum_probs=135.0
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
+|-+.++.+++........ .+..|..|+++||+|||+++......+.+...++++.
T Consensus 33 ~~~s~~~~g~~~s~~~~~~-~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~----------------------- 88 (377)
T TIGR00890 33 FGVGVTAVAIWFTLLLIGL-AMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA----------------------- 88 (377)
T ss_pred hCCCHHHHHHHHHHHHHHH-HHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH-----------------------
Confidence 4444678899998776544 6899999999999999999888777666666555432
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCC
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGP 183 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp 183 (462)
.+.|...+.+...++-.....+ .....+.|.++ ||+.+..+....+.++|.++++.+...+.+.
T Consensus 89 --------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------ 152 (377)
T TIGR00890 89 --------DSLAALYLTYGLASAGVGIAYG-IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL------ 152 (377)
T ss_pred --------HHHHHHHHHHHHHhHHHHHHHH-hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc------
Confidence 1455555666655554444444 35556677765 6788899999999999988777666544311
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q 012495 184 GVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINL 263 (462)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l 263 (462)
.+|.... ....+......+..+...+ .|++++++++++........+..+++|....+....+........
T Consensus 153 --~~~~~~f---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (377)
T TIGR00890 153 --EGVPAAF---IYMGIIFLLVIVLGAFLIG----YPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLL 223 (377)
T ss_pred --ccHHHHH---HHHHHHHHHHHHHHHHhee----cCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHH
Confidence 1222111 1010111111111221121 122111111111111122345566777655555444444444433
Q ss_pred HHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 264 VEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 264 ~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
....+..+.++ .+.+++. .+.+....++..++-..+.+++.+|+|.+....+.-.
T Consensus 224 ~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 278 (377)
T TIGR00890 224 LIGLYKPYGQS-LGLSDGF---LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFG 278 (377)
T ss_pred HHHHHHHHHHH-cCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 33334444433 3333322 2233444555554445667899999998877654433
No 35
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.37 E-value=1e-09 Score=112.44 Aligned_cols=261 Identities=11% Similarity=0.012 Sum_probs=150.6
Q ss_pred hhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012495 4 CILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYP 83 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p 83 (462)
+...+....-|.-+.+..+ +|-+.++.+++.....+ ...+..|..|+++||+||||++......+++..++.++.
T Consensus 14 ~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--- 88 (382)
T PRK10091 14 GLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYAL-GVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--- 88 (382)
T ss_pred HHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHH-HHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh---
Confidence 3444455666666665544 66556778888886664 557899999999999999999998888777766655542
Q ss_pred cccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHH
Q 012495 84 LSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVA 163 (462)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG 163 (462)
+ +.|...+.++..++......+ ..-..+.|.++++|+.|.+++..++.++|
T Consensus 89 ------~----------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 139 (382)
T PRK10091 89 ------S----------------------SYLMLAIGRLVSGFPHGAFFG-VGAIVLSKIIKPGKVTAAVAGMVSGMTVA 139 (382)
T ss_pred ------C----------------------cHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCChHHhhHHHHHHHHHHHHH
Confidence 1 356666677777776544455 46678899999999999999999999999
Q ss_pred HHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhh
Q 012495 164 LIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVS 243 (462)
Q Consensus 164 ~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~ 243 (462)
..+|+.+...+.+. . +|.... .+.+...+.......... ||.+++ ++.+..+..+...+
T Consensus 140 ~~~g~~l~~~l~~~---~-----gwr~~f-------~~~~~~~~~~~~~~~~~l--p~~~~~----~~~~~~~~~~~~~~ 198 (382)
T PRK10091 140 NLLGIPLGTYLSQE---F-----SWRYTF-------LLIAVFNIAVLASIYFWV--PDIRDE----AKGGLREQFHFLRS 198 (382)
T ss_pred HHHhccHHHHHhhh---c-----cHHHHH-------HHHHHHHHHHHHHHHHhC--CCCCcc----cccCHHHHHHHhcC
Confidence 99888776655421 1 222111 111111111110011112 432211 11122344554444
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH
Q 012495 244 SRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTV 323 (462)
Q Consensus 244 s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~ 323 (462)
.+....++...+.+..... .......+.++.++.+++..+ .+....++..++...+.+++.+|+|.++...+...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~~---~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~ 274 (382)
T PRK10091 199 PAPWLIFAATMFGNAGVFA-WFSYIKPYMMFISGFSETSMT---FIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFI 274 (382)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHH
Confidence 4333222222222111111 111122334444444443333 345555555555566788999999998887766553
No 36
>PRK12382 putative transporter; Provisional
Probab=99.37 E-value=3.7e-10 Score=115.79 Aligned_cols=147 Identities=8% Similarity=-0.043 Sum_probs=104.2
Q ss_pred hhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012495 4 CILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYP 83 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p 83 (462)
+...+.++..|+-+..+.++.|.++++++.+.....++. .+..|..|+++||+||||++......+......+.....
T Consensus 26 ~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~-~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~- 103 (392)
T PRK12382 26 LTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLAT-VLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAI- 103 (392)
T ss_pred HHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHH-HHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhc-
Confidence 344456667776665554556656888999999877655 589999999999999999988877666554433332110
Q ss_pred cccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHH
Q 012495 84 LSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVA 163 (462)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG 163 (462)
.+... ..+.|...+.++..++-.....+ .-.+.+.|.+++||+.|.++..+.+.+.|
T Consensus 104 -----~~~~~-----------------~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~~g 160 (392)
T PRK12382 104 -----LPVSA-----------------PFKFALLVVGRLILGFGESQLLT-GALTWGLGLVGPKHSGKVMSWNGMAMYGA 160 (392)
T ss_pred -----cccch-----------------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCccccchhhhHHHHHHHHH
Confidence 01000 01445566666777776655555 36788899999999999999999999999
Q ss_pred HHhhhhhHHHhh
Q 012495 164 LIFSGRTVKYFS 175 (462)
Q Consensus 164 ~i~gg~~~~~l~ 175 (462)
..+|+.+...+.
T Consensus 161 ~~~g~~~~~~l~ 172 (392)
T PRK12382 161 LAAGAPLGLLLH 172 (392)
T ss_pred HHHHHHHHHHHH
Confidence 999888877654
No 37
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.37 E-value=5.4e-10 Score=118.75 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=105.0
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY 82 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~ 82 (462)
|+....-+++-..-|++..+ +|.+.++.+|+-..+.+.. ....|.+|+++||+|||+++......+.+..++.++.
T Consensus 16 ~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~-~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a-- 91 (495)
T PRK14995 16 IPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVM-AGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS-- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc--
Confidence 44444555555666666544 6655778999998777655 5788999999999999999999888887776665542
Q ss_pred hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CChhhhhhhhhhhhhHHH
Q 012495 83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQI-TTVDEAKRFYPLFGLGAN 161 (462)
Q Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi-~~~~qakR~fgli~ag~~ 161 (462)
+ +.|...+.+.+.++-+....+ ...+.+.|. .++||+.|.++..+++.+
T Consensus 92 -------~----------------------~~~~li~~r~l~G~g~~~~~~-~~~~~l~~~~~~~~~r~~~~g~~~~~~~ 141 (495)
T PRK14995 92 -------P----------------------TASWLIATRALLAIGAAMIVP-ATLAGIRATFTEEKQRNMALGVWAAVGS 141 (495)
T ss_pred -------C----------------------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 456677777788877666555 355666555 578999999999999999
Q ss_pred HHHHhhhhhHHHhhh
Q 012495 162 VALIFSGRTVKYFSN 176 (462)
Q Consensus 162 lG~i~gg~~~~~l~~ 176 (462)
+|..+|+.+.+.+.+
T Consensus 142 ~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 142 GGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998887753
No 38
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.36 E-value=3.8e-10 Score=118.63 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=107.0
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY 82 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~ 82 (462)
|+..+..++..+..+.+..+ .|.++++..++...+.+.. .+..|..|+++||+|||+++......+.+..++.+..
T Consensus 12 ~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~-~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-- 87 (485)
T TIGR00711 12 FMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLAN-AISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHH-HHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--
Confidence 34445566677777766655 6666788999998776544 6899999999999999999888877776655544321
Q ss_pred hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
+ +.|...+.+...++.+....+ ..++++.|.+++||+.|.+++.+.+.++
T Consensus 88 -------~----------------------~~~~l~~~~~~~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 137 (485)
T TIGR00711 88 -------P----------------------NLELMIIFRVIQGFGGGPLIP-LSFSTLLNIYPPEKRGRAMAIWGLTVLV 137 (485)
T ss_pred -------C----------------------CHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 1 345566677777777766666 5899999999999999999999999999
Q ss_pred HHHhhhhhHHHhh
Q 012495 163 ALIFSGRTVKYFS 175 (462)
Q Consensus 163 G~i~gg~~~~~l~ 175 (462)
|..+|+.+.+.+.
T Consensus 138 g~~~g~~~~~~l~ 150 (485)
T TIGR00711 138 APALGPTLGGWII 150 (485)
T ss_pred HhhhhhccHhHhc
Confidence 9999888877664
No 39
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.36 E-value=4.8e-09 Score=108.24 Aligned_cols=266 Identities=12% Similarity=0.018 Sum_probs=146.7
Q ss_pred hHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 012495 5 ILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPL 84 (462)
Q Consensus 5 i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~ 84 (462)
...+++...+..+.+. ++.|-++++.+++.+.+.+ +..+..|..|++.||+||||++......+.+...++.....
T Consensus 25 ~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~-~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~-- 100 (402)
T TIGR00897 25 FMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGI-AAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL-- 100 (402)
T ss_pred HHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHH-HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3444444444444444 2355557889999887765 54689999999999999999998887777665544322100
Q ss_pred ccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHH
Q 012495 85 SNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVAL 164 (462)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~ 164 (462)
.++ +.|...+.+.+.++-...... ...+.+.|.+++||+.|..++..++.++|.
T Consensus 101 ---~~~----------------------~~~~l~~~~~i~G~g~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 154 (402)
T TIGR00897 101 ---GHA----------------------NYPLILLFYGIRGLGYPLFAY-SFLVWVVYNTKQDNLSSAVGWFWAVYSIGI 154 (402)
T ss_pred ---cCc----------------------cHHHHHHHHHHHHcchHHHHh-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 001 234444555655553333333 356678889999999999999999999996
Q ss_pred -HhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhh
Q 012495 165 -IFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVS 243 (462)
Q Consensus 165 -i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~ 243 (462)
++|+.+...+.+ ..| +.... ..... ...... +... +..+..+.|++ ++++++..+..+..+.++|
T Consensus 155 ~~~g~~~~~~l~~---~~g-----~~~~~-~~~~~-~~~~~~-~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 220 (402)
T TIGR00897 155 GVFGSYYSSYAIP---AFG-----EMNTL-WSALA-FVLTGG-VIAL-FSNKDIFTPQH--MQTREKFSELGKAATILFT 220 (402)
T ss_pred HHHHHHHHHhccc---ccc-----hHHHH-HHHHH-HHHHHH-HHHH-hccCCCCCccc--ccCCcchhhHHHHHHHHHc
Confidence 567666554431 121 11110 11111 111111 1111 12222111221 1111112234566778899
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHH
Q 012495 244 SRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAK 318 (462)
Q Consensus 244 s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~ 318 (462)
+|.+..++...+........+......+.++ ...+++.. +......++..++.....+++.+|+|.++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 221 NPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEW---LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 9987766655544444333333333445544 34333222 23344445555555667789999999877653
No 40
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.35 E-value=7.1e-09 Score=110.20 Aligned_cols=265 Identities=14% Similarity=0.151 Sum_probs=152.9
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccc-----CchhH-HHHHHHHHHHHHHHHHHH
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKL-----SKQAL-FYTVIVPFIAFFGAFGFL 80 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~-----~r~~v-~~~~l~~f~~~~~lf~~~ 80 (462)
..+.+.-+.-+....+ .|-+.+++.++.. ...+. .+.++++.++||+ ||||. +..+....++.....++.
T Consensus 26 l~~~~~~~~l~~~l~~-~g~~~~~ig~~~~-~~~~~--~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~ 101 (491)
T PRK11010 26 LPLALTSGTLQAWMTV-ENIDLKTIGFFSL-VGQAY--VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL 101 (491)
T ss_pred HHHHHHHHHHHHHHHh-CCCCHHHHHHHHH-HHHHH--HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 3444444544444333 3544667888744 33343 6889999999999 99886 545555555555555442
Q ss_pred HhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHH
Q 012495 81 LYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGA 160 (462)
Q Consensus 81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~ 160 (462)
+|. .+.|.....++..+..++..-. ...++++|.+++||+.|..+....+.
T Consensus 102 --------~~~--------------------~~l~~l~~~~~l~~~~~a~~~i-~~~a~~~~~~~~~~rg~~~~i~~~g~ 152 (491)
T PRK11010 102 --------EPG--------------------TQLRWLAALAVVIAFCSASQDI-VFDAWKTDVLPAEERGAGAAISVLGY 152 (491)
T ss_pred --------CCc--------------------chHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 121 1345566666777777665555 59999999999999999999999999
Q ss_pred HHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHH
Q 012495 161 NVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKF 240 (462)
Q Consensus 161 ~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~ 240 (462)
++|.++|+.....+.+. ..+|...+... .+.+.+...... ..++|++.++++++++....+.++.
T Consensus 153 ~lG~llg~~l~~~l~~~-------~~GWr~~f~i~----a~l~ll~~l~~~----~~~e~~~~~~~~~~~~~~~~~~l~~ 217 (491)
T PRK11010 153 RLAMLVSGGLALWLADR-------YLGWQGMYWLM----AALLIPCIIATL----LAPEPTDTIPVPKTLEQAVVAPLRD 217 (491)
T ss_pred HHHHHHHHHHHHHHHhc-------ccCHHHHHHHH----HHHHHHHHHHHH----hcCCCccccccccchhhhHHHHHHH
Confidence 99999999887766420 11343322110 111111111111 1222221111111111123456666
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhchhHHHHH
Q 012495 241 LVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFGWGVAAKI 319 (462)
Q Consensus 241 i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G~~~~~~i 319 (462)
++++|....+....+++.............+..+..+.+++. .|......+... ++..++.+++.+|+|.++...+
T Consensus 218 ~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~---~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i 294 (491)
T PRK11010 218 FFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGE---VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMI 294 (491)
T ss_pred HHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 777776555555556666665555554555555445544422 233444444433 5567889999999998876654
Q ss_pred HHH
Q 012495 320 TPT 322 (462)
Q Consensus 320 ~P~ 322 (462)
.-+
T Consensus 295 ~~~ 297 (491)
T PRK11010 295 FGI 297 (491)
T ss_pred HHH
Confidence 443
No 41
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.34 E-value=9.9e-10 Score=114.29 Aligned_cols=265 Identities=13% Similarity=0.063 Sum_probs=137.5
Q ss_pred CchhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCc-hhHHHHHHHHHHHHHHHHHH
Q 012495 1 MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSK-QALFYTVIVPFIAFFGAFGF 79 (462)
Q Consensus 1 ~~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r-~~v~~~~l~~f~~~~~lf~~ 79 (462)
++|+....|++.-|.-.....++.|-++++++++..... ..+++..|..|+++||++| |+++.+......+...++.+
T Consensus 10 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~-~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~ 88 (418)
T TIGR00889 10 MSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTG-IAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888777777776656656889999998776 4667999999999999965 66766555544443333332
Q ss_pred HHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHH----hhCChhhhhhh
Q 012495 80 LLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISV---LFWGFAN----QITTVDEAKRF 152 (462)
Q Consensus 80 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~---lfwa~~n----di~~~~qakR~ 152 (462)
. .+.|...++++..++..+...++ +..++.+ |+.+..++.|.
T Consensus 89 ~-------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~ 137 (418)
T TIGR00889 89 V-------------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRV 137 (418)
T ss_pred h-------------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeee
Confidence 1 02344444455555533222211 2334444 55665666777
Q ss_pred hhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCC
Q 012495 153 YPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKM 232 (462)
Q Consensus 153 fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~ 232 (462)
+|. +|..+|+.+.+.+.. .+ .| .++ .+.+.+.+....... . .||.+++++++ +.
T Consensus 138 ~G~------lG~~ig~~l~g~l~~-----~~---~~-------~~f-~~~~~~~~~~~~~~~-~--~~e~~~~~~~~-~~ 191 (418)
T TIGR00889 138 MGT------IGFIAAMWAVSLLDI-----EL---SN-------IQL-YITAGSSALLGVFAL-T--LPDIPVAKSTA-KM 191 (418)
T ss_pred ehh------HHHHHHHHHHHHhcc-----cc---hh-------HHH-HHHHHHHHHHHHHHh-c--CCCCCCCcccc-cc
Confidence 774 456666655554321 10 00 111 111111111111111 1 13322111111 11
Q ss_pred ChH----HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh---hh-hhHHhhHHHHHHHHHHHHHHhh
Q 012495 233 GTM----ESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPN---EY-SSFMGDFSTATGIATFTMMLLS 304 (462)
Q Consensus 233 ~~~----~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~---~~-~~f~g~~~~~~gi~~l~q~~l~ 304 (462)
+.. .+.+.++|+|.+..+....++.+...+..+..+..+.++.-.+++ +. .+..|......++..+.-.+..
T Consensus 192 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~ 271 (418)
T TIGR00889 192 SIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTI 271 (418)
T ss_pred CHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111 123456777765555555555555444444433444443211111 11 1223334444444444445778
Q ss_pred HHHHHHhchhHHHHHHHHH
Q 012495 305 QFVFDKFGWGVAAKITPTV 323 (462)
Q Consensus 305 ~~li~r~G~~~~~~i~P~~ 323 (462)
+++.+|+|.|+...+.-++
T Consensus 272 g~l~dr~g~r~~l~~~~~~ 290 (418)
T TIGR00889 272 PFFLKRFGIKKVMLLSLVA 290 (418)
T ss_pred HHHHHHhCcHHHHHHHHHH
Confidence 8999999999987666553
No 42
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.34 E-value=4.2e-10 Score=131.15 Aligned_cols=237 Identities=12% Similarity=0.050 Sum_probs=146.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHH--HHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcc
Q 012495 29 EIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVP--FIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFL 106 (462)
Q Consensus 29 ~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~--f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~ 106 (462)
.......+.+.+|. +++.|+.|+++||+|||+++...... ......++++.
T Consensus 52 ~~~~l~~~~~~l~~-~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-------------------------- 104 (1140)
T PRK06814 52 ALVTLAGAVFILPF-FIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-------------------------- 104 (1140)
T ss_pred HHHHHHHHHHHHHH-HHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 34566666666666 58999999999999999986443222 11111111111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCc
Q 012495 107 GPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVD 186 (462)
Q Consensus 107 ~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~ 186 (462)
..+.|...+..++.++.+....+ ...+.+.|+++.+|+.+..++..++.++|.++|+.+.+.+... .
T Consensus 105 ----~~s~~~l~~~~~l~gi~~a~~~p-~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~---~----- 171 (1140)
T PRK06814 105 ----LNSVPLLFAALFLMGIHSALFGP-IKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS---G----- 171 (1140)
T ss_pred ----HhhHHHHHHHHHHHHHHHHhhch-HHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---c-----
Confidence 02567777888888888777767 5999999999999999999999999999999999888876531 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccC--CCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Q 012495 187 GWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEK--PKMGTMESLKFLVSSRYIRDLATLVVAYGISINLV 264 (462)
Q Consensus 187 ~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k--~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~ 264 (462)
+|...+ ....+.+++.+.....+.+. +++.++.+.+ ...+..++++.++++|.+..+.+......+....+
T Consensus 172 ~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1140)
T PRK06814 172 NFVILV----ALLMGIAVLGWLASLFIPKT---GNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVV 244 (1140)
T ss_pred ccHHHH----HHHHHHHHHHHHHHhhCCCC---CCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 121111 00011111111111111111 1111111111 11234578999999999888777777776666666
Q ss_pred HHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhH
Q 012495 265 EVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGV 315 (462)
Q Consensus 265 e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~ 315 (462)
......++++.++.+++ ..|.+.+..++..++-.++.+++.++.+.+.
T Consensus 245 ~~~~p~~~~~~~g~~~~---~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~ 292 (1140)
T PRK06814 245 LSQLPLLAKETLGGDEN---VATLFLAVFSVGVAVGSFLASKLSEGRITLL 292 (1140)
T ss_pred HHHhHHHHHHHcCCchH---HHHHHHHHHHHHHHHHHHHHHHHhCCceeee
Confidence 66777788877766553 3344455555555555566778877665444
No 43
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.34 E-value=2.6e-09 Score=109.87 Aligned_cols=140 Identities=10% Similarity=0.081 Sum_probs=88.3
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHH-HHHHHHHHHHHHHHHHH
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFY-TVIVPFIAFFGAFGFLL 81 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~-~~l~~f~~~~~lf~~~l 81 (462)
|+...+.++..|.-+....+++|.++++++.+.+...... .+..+..+.++||+||||.+. ......++...++++.
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~-~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~- 102 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIG-ILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN- 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHh-
Confidence 5666777888887777666666766788888876555444 577888888899999998754 3333322322222221
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhh--hhhhhhhhH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAK--RFYPLFGLG 159 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qak--R~fgli~ag 159 (462)
.+.|...+..+..+..+....+ ...+++.|..+.|++. ++.+..+++
T Consensus 103 ------------------------------~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (393)
T PRK15011 103 ------------------------------RNYFVLLFVGVFLSSFGSTANP-QMFALAREHADKTGREAVMFSSFLRAQ 151 (393)
T ss_pred ------------------------------hHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 1233333333333344444444 4677778877665543 334788899
Q ss_pred HHHHHHhhhhhHHHhh
Q 012495 160 ANVALIFSGRTVKYFS 175 (462)
Q Consensus 160 ~~lG~i~gg~~~~~l~ 175 (462)
.++|.++|+.+...+.
T Consensus 152 ~~lg~~~g~~i~~~l~ 167 (393)
T PRK15011 152 VSLAWVIGPPLAYALA 167 (393)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 9999999988887765
No 44
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.33 E-value=3e-10 Score=114.35 Aligned_cols=242 Identities=11% Similarity=0.067 Sum_probs=147.1
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|-++++.+++.+.... ..++..+..|+++||+|||+++........+..+++++.
T Consensus 25 ~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------------------- 80 (379)
T TIGR00881 25 IGLSKTDLGLLLSSFSI-AYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS----------------------- 80 (379)
T ss_pred hCCCHhHHHHHHHHHHH-HHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----------------------
Confidence 55556788999887664 556899999999999999999988877776666655542
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhh-hHHHhhhhhccCC
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGR-TVKYFSNLRKNLG 182 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~-~~~~l~~~~~~~g 182 (462)
.+.|...+.++..++......+ ..++++.|.+++||+.|.+++...+.++|.++|+. ....+... .
T Consensus 81 --------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~- 147 (379)
T TIGR00881 81 --------TSLWVMAALWALNGIFQGMGWP-PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL---Y- 147 (379)
T ss_pred --------hhHHHHHHHHHHHHhhccccCC-chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---C-
Confidence 1456666777777776656666 58999999999999999999999999999999884 44433211 1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---Cccc----cc------cccCCCCChHHHHHHHhhcHHHHH
Q 012495 183 PGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVEL---PTRS----KK------KKEKPKMGTMESLKFLVSSRYIRD 249 (462)
Q Consensus 183 p~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~---p~~~----~~------~~~k~~~~~~~~l~~i~~s~yl~~ 249 (462)
+|...... ...+.....+......++..+. ++.+ ++ ++++++....+..+.++++|.+..
T Consensus 148 ----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (379)
T TIGR00881 148 ----SWHWVFIV---PGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWY 220 (379)
T ss_pred ----CchhHHHH---HHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHH
Confidence 22211100 0011111111111112211100 0000 00 000111122345677888998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhc
Q 012495 250 LATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFG 312 (462)
Q Consensus 250 l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G 312 (462)
++...+......+.++.....+.++..+.+++.... .....++..++-..+.+++.+|.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 221 ISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASW---AFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH---HHHHHHHHcchhHHHHHHHHHHHc
Confidence 777777777666666666667777666655543333 344444444444556777888753
No 45
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.33 E-value=2.4e-09 Score=108.38 Aligned_cols=240 Identities=14% Similarity=0.081 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHH
Q 012495 44 IGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVM 123 (462)
Q Consensus 44 ~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~ 123 (462)
.+..|+.|+++||+||||++......+.+..+++++. ++.... .....|...+.++.
T Consensus 49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------~~~~~~--------------~~~~~~~~~~~r~l 105 (394)
T TIGR00883 49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL---------PSYATI--------------GIWAPILLLLARLI 105 (394)
T ss_pred hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC---------CChhhh--------------HHHHHHHHHHHHHH
Confidence 3567999999999999999988887777666555542 110000 00012234444555
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHH
Q 012495 124 AELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMG 203 (462)
Q Consensus 124 ~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g 203 (462)
.++......+ ..-.++.|.+++||+.+..+....+.++|.++|+.+...+...........-+|... + .+.+
T Consensus 106 ~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~------~-~~~~ 177 (394)
T TIGR00883 106 QGFSLGGEWG-GAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIP------F-LVSA 177 (394)
T ss_pred HHhhcccccc-ccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHH------H-HHHH
Confidence 5554444444 366789999999999999999999999999999887765543211000000122211 1 1122
Q ss_pred HHHHHHHHHHhhhcCC-Cccccc--cccCCCCChHHHHHHHhhcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 012495 204 LSICGLYWWVNNNVEL-PTRSKK--KKEKPKMGTMESLKFLVSSRY--IRDLATLVVAYGISINLVEVTWKSKLKAQFPS 278 (462)
Q Consensus 204 ~l~l~~~~~~~~~~~~-p~~~~~--~~~k~~~~~~~~l~~i~~s~y--l~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~ 278 (462)
...+.... .....++ |+.+++ ++++++. .++..++++. +.......+........+......+.++..+.
T Consensus 178 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 252 (394)
T TIGR00883 178 VLVLIGLY-LRRNLEETPVFEKAQEKHKKKRG----PIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGL 252 (394)
T ss_pred HHHHHHHH-HHHhcCCChhHHHHHhccccccC----CHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11111111 1111111 111111 1111122 2333334433 44444444444444444444455555555544
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 279 PNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 279 ~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
+++.. +......++...+...+.+++.+|+|-|+.....-.
T Consensus 253 ~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 293 (394)
T TIGR00883 253 SANSA---LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV 293 (394)
T ss_pred ChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 44332 223444445554445667899999998887654433
No 46
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.33 E-value=1.1e-09 Score=113.54 Aligned_cols=256 Identities=16% Similarity=0.141 Sum_probs=142.6
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcc----cCchh-HHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHh
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADK----LSKQA-LFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLL 98 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r----~~r~~-v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~ 98 (462)
.|-++.+.+.+.+...+.. .+..|+.|.++|| +|||| .+......+++.+++... . |+.
T Consensus 30 ~g~s~~~~g~i~~~~~i~~-~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~--~-------~~~------ 93 (437)
T TIGR00792 30 LGLSAAFVGTLFLVARILD-AITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT--T-------PDF------ 93 (437)
T ss_pred cCCCHHHHHHHHHHHHHHH-HhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh--C-------CCC------
Confidence 3333677888888766544 5899999999998 67744 454555555544433322 1 110
Q ss_pred hhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhh
Q 012495 99 NILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQIT-TVDEAKRFYPLFGLGANVALIFSGRTVKYFSNL 177 (462)
Q Consensus 99 ~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~-~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~ 177 (462)
+.. .+.|...+.|+..++..+.... -.+++..|.+ |++||.|..+.-..+.++|.++++.+...+...
T Consensus 94 ---~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 162 (437)
T TIGR00792 94 ---SAT-------GKLVYAYITYILLGLFYSFVNI-PYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSY 162 (437)
T ss_pred ---Ccc-------hHHHHHHHHHHHHHHHHHhhcc-cHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 1233344444444443333323 3788999998 579999999999999999888877766554422
Q ss_pred hccCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc--cccccCCCCChHHHHHHHhhcHHHHHHHHH
Q 012495 178 RKNLGPG--VDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRS--KKKKEKPKMGTMESLKFLVSSRYIRDLATL 253 (462)
Q Consensus 178 ~~~~gp~--~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~--~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~ 253 (462)
.+.. ..+|.. .+.+.+.+.+.......... ||++ ++++++++.+..+.+|.++++|.+..++..
T Consensus 163 ---~~~~~~~~g~~~-------~~~i~~~l~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 163 ---FGGGDDKFGWFM-------FALVLALIGVVSLIICFFGT--KERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred ---hCCCcccccHHH-------HHHHHHHHHHHHHHHHHcCC--EecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHH
Confidence 1211 112211 11222222111111111111 2211 111223345678999999999998887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 254 VVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 254 v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
.++.....+........+.++..+++++ .+.+....++..++...+.+++.+|+|-+....+.-+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~ 295 (437)
T TIGR00792 231 YLFYNLAFNIKNGVQVYYFTYVLGDPEL----FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGIL 295 (437)
T ss_pred HHHHHHHHHHHcchhheeEeeecCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 7777776665554433344433333322 2223333344455556778899999998887665543
No 47
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.31 E-value=9.5e-09 Score=106.35 Aligned_cols=119 Identities=16% Similarity=0.051 Sum_probs=92.9
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|-++++.+++.....+ ...+..|..|+++||+|||+++........+..++.++.
T Consensus 48 ~~~s~~~~~~~~~~~~~-~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------------------- 103 (426)
T PRK12307 48 LGLTDMEGAFLATAAFI-GRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA----------------------- 103 (426)
T ss_pred hCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 44445678888876665 446889999999999999999998888877776655542
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|...+.+.+.++-.....+ ...+++.|.+++|++.|..++..++.++|.++++.+...+.
T Consensus 104 --------~~~~~l~~~r~l~G~g~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 104 --------SGVIMLTLSRFIVGMGMAGEYA-CASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred --------hHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 1456666777777766555566 48889999999999999999999999999999987776543
No 48
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.31 E-value=1.8e-09 Score=109.09 Aligned_cols=279 Identities=11% Similarity=-0.009 Sum_probs=153.1
Q ss_pred hHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 012495 5 ILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPL 84 (462)
Q Consensus 5 i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~ 84 (462)
....+...-|+.+....+.+|-++++.+++.....+ ...+..+..|+++||+|||+.+........+..+++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~---- 87 (366)
T TIGR00886 13 SFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVL-AGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA---- 87 (366)
T ss_pred HHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----
Confidence 344555666666643434466557788999887665 446899999999999999999888877777766555542
Q ss_pred ccccCCchHHHHHhhhhCCCcchhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHH
Q 012495 85 SNAIHPQALADKLLNILGPRFLGPLAIM-RIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVA 163 (462)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG 163 (462)
. +.|...+.++..++.+. ..+ ...++++|.+++||+.+..++.....++|
T Consensus 88 ---------------------------~~~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 138 (366)
T TIGR00886 88 ---------------------------VQSYSVLLLLRLFIGIAGG-SFA-SCMPWISFFFPKKIQGTALGLAAGWGNMG 138 (366)
T ss_pred ---------------------------hhhHHHHHHHHHHHHHhch-hhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHH
Confidence 1 34555566677776654 344 36789999999999999999999777777
Q ss_pred HHhhhhhHHHhhhhh-ccCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccC-----CCCChHH
Q 012495 164 LIFSGRTVKYFSNLR-KNLG-PGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEK-----PKMGTME 236 (462)
Q Consensus 164 ~i~gg~~~~~l~~~~-~~~g-p~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k-----~~~~~~~ 236 (462)
..+|+.+...+.... +..+ +...+|......... .+.....+..+....+..+.++++++++.+ .+....+
T Consensus 139 ~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (366)
T TIGR00886 139 GGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPA--GILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALG 216 (366)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhHHHHH--HHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHH
Confidence 777666554443211 1000 111123222100000 111111111111122211100000000000 0001112
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHH
Q 012495 237 SLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVA 316 (462)
Q Consensus 237 ~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~ 316 (462)
..+..+++|....++.....+......+......+.++.++.+++..+. +....++..++-..+.+++.+|+|-+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 293 (366)
T TIGR00886 217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGA---YASLGGLLGSLARPLGGAISDRLGGARK 293 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH---HHHHHHHHHHHHhhccchHHHhhccchh
Confidence 3445666666555555444444444445555566677666654533333 2333344444444567889999999776
Q ss_pred HHHHHH
Q 012495 317 AKITPT 322 (462)
Q Consensus 317 ~~i~P~ 322 (462)
....-.
T Consensus 294 ~~~~~~ 299 (366)
T TIGR00886 294 LLMSFL 299 (366)
T ss_pred HHHHHH
Confidence 554433
No 49
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.31 E-value=2.2e-09 Score=106.59 Aligned_cols=241 Identities=15% Similarity=0.126 Sum_probs=157.7
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY 82 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~ 82 (462)
++..++++...+..+.+..+ .|.++++..+....... .+.+..|..|+++||+||||.+............+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-- 84 (352)
T cd06174 9 FLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSL-GYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-- 84 (352)
T ss_pred HHHHHhhhhhHhhHHHHHHH-cCCCHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh--
Confidence 34455566666666666544 45557888998887665 447899999999999999998877777666665544431
Q ss_pred hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
.+.|...+.++..++......+ ..-+++.|.+++||+.+.++....+.++
T Consensus 85 -----------------------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (352)
T cd06174 85 -----------------------------SSLWLLLVGRFLLGLGGGALYP-AAAALIAEWFPPKERGRALGLFSAGFGL 134 (352)
T ss_pred -----------------------------ccHHHHHHHHHHHHcccccccH-hHHHHHHHhCCccchhhhhhHHHHHHHH
Confidence 1345666666777776555556 4889999999999999999999999999
Q ss_pred HHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHh
Q 012495 163 ALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLV 242 (462)
Q Consensus 163 G~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~ 242 (462)
|..+|+.+...+.+.. +|....... .+...+........ |
T Consensus 135 g~~~~~~~~~~~~~~~--------~~~~~~~~~----~~~~~~~~~~~~~~------~---------------------- 174 (352)
T cd06174 135 GALLGPLLGGLLAESL--------GWRWLFLIL----AILGLLLALLLLFL------L---------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHh--------hHHHHHHHH----HHHHHHHHHHHHHH------H----------------------
Confidence 9999988887664321 111111000 00111111111001 1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhH-HHHHHH
Q 012495 243 SSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGV-AAKITP 321 (462)
Q Consensus 243 ~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~-~~~i~P 321 (462)
|.+..+...........+..........++.++.+++.. +......++..++-..+.+++.+|+|.++ ...+.-
T Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
T cd06174 175 --RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA---GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGL 249 (352)
T ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 456666666677777777777777777777655555333 33455556666555667788999999888 554433
Q ss_pred H
Q 012495 322 T 322 (462)
Q Consensus 322 ~ 322 (462)
.
T Consensus 250 ~ 250 (352)
T cd06174 250 L 250 (352)
T ss_pred H
Confidence 3
No 50
>PRK11043 putative transporter; Provisional
Probab=99.31 E-value=2.9e-09 Score=109.45 Aligned_cols=135 Identities=7% Similarity=0.007 Sum_probs=93.5
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSN 86 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~ 86 (462)
++..+.-|.-+.+..+ +|.++++.+++.....+.+ .+..+..|+++||+|||+++........+..++.++.
T Consensus 20 ~~~~~~~p~~~~i~~~-~~~s~~~~g~~~s~~~~~~-~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------ 91 (401)
T PRK11043 20 LATDMYLPAFKAIQAD-LQTSASAVSASLSLFLAGF-ALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------ 91 (401)
T ss_pred HHHHHHHhhHHHHHHH-HCCCHHHHHHHHHHHHHHH-HHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------
Confidence 3445555655444333 5555788899988776555 6899999999999999999877766555544433321
Q ss_pred ccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHh
Q 012495 87 AIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIF 166 (462)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~ 166 (462)
+ +.|...+.+...++....... ...+.++|.++.+++.|.++.+..+.++|..+
T Consensus 92 ---~----------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (401)
T PRK11043 92 ---E----------------------SAAQLLVLRFVQAVGVCSAAV-IWQALVIDRYPAQKANRVFATIMPLVALSPAL 145 (401)
T ss_pred ---c----------------------CHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 1 234444455555554333344 47889999999999999999999888888888
Q ss_pred hhhhHHHhh
Q 012495 167 SGRTVKYFS 175 (462)
Q Consensus 167 gg~~~~~l~ 175 (462)
|+.+...+.
T Consensus 146 g~~i~~~l~ 154 (401)
T PRK11043 146 APLLGAWLL 154 (401)
T ss_pred HHHHHHHHH
Confidence 887776654
No 51
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.30 E-value=2.7e-09 Score=124.21 Aligned_cols=254 Identities=13% Similarity=0.054 Sum_probs=150.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhh
Q 012495 31 IPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLA 110 (462)
Q Consensus 31 l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~ 110 (462)
..++.+.+.++. +++.|..|+++||+|||+++..+....++..++..+...
T Consensus 49 ~~~~~~~~~l~~-~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~---------------------------- 99 (1146)
T PRK08633 49 TAIVNALFLLPF-LLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY---------------------------- 99 (1146)
T ss_pred HHHHHHHHHHHH-HHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Confidence 456666555555 689999999999999999988776544444333322110
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCC-CchhH
Q 012495 111 IMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPG-VDGWA 189 (462)
Q Consensus 111 ~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~-~~~~~ 189 (462)
..+.|...+.+++.++......+ ...++++|.++.+|+.|.+++..++.++|.++|+.+.+.+.......++. .+++.
T Consensus 100 ~~~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~ 178 (1146)
T PRK08633 100 LGWFWLAFAVTFLLGAQSAIYSP-AKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRI 178 (1146)
T ss_pred HccHHHHHHHHHHHHHHHHhhch-HHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Confidence 01356677777888877766666 58899999999999999999999999999999998888775421000000 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccc--ccC--CCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 012495 190 VSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKK--KEK--PKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVE 265 (462)
Q Consensus 190 ~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~--~~k--~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e 265 (462)
. .........+++.+.....+.+. |+..+.+ +++ ......+.++.++++|.+....+...++......+.
T Consensus 179 ~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1146)
T PRK08633 179 A---PAGLVLLAVAVLGLIFAYRLPKV---PAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQ 252 (1146)
T ss_pred H---HHHHHHHHHHHHHHHHHhcCcCC---CCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 0 00101011111111111111111 1111110 111 112346778889999987776665555555555666
Q ss_pred HHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 266 VTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
..+..+.++.+..++. ...|.+....++..++-.++.+++.+|.+.+....+.-+
T Consensus 253 ~~~~~~~~~~~g~s~~--~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~ 307 (1146)
T PRK08633 253 ANFPAYAKEVLGLDNT--FQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGAL 307 (1146)
T ss_pred HhhHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHH
Confidence 6666677666655443 133444555555555556778899999987765544333
No 52
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.30 E-value=3.6e-09 Score=108.62 Aligned_cols=148 Identities=11% Similarity=-0.059 Sum_probs=106.4
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY 82 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~ 82 (462)
|...++.++..|+-+..+.++.|.++++.+++.....++. .+..|..|+++||+||||++..+...+.+...+.++...
T Consensus 25 ~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~-~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 103 (399)
T PRK05122 25 FISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLAT-LLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGL 103 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhh
Confidence 4556677888888887666666756788999998777655 689999999999999999999888766655444433210
Q ss_pred hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
+.+ .. ..+.|...+.+.+.++-.....+ ...++++|.++.||+.|..++.+.+.++
T Consensus 104 ------~~~----------~~-------~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 159 (399)
T PRK05122 104 ------LAA----------WP-------VLSLLLLLLGRLLLGIGESLAGT-GSILWGIGRVGALHTGRVISWNGIATYG 159 (399)
T ss_pred ------hhc----------cc-------hhHHHHHHHHHHHHHhhHHhhcc-hHHHHHHhhcChhhhccchhhhhhhhhH
Confidence 000 00 01334455556666666555545 3667889999999999999999999999
Q ss_pred HHHhhhhhHHHhh
Q 012495 163 ALIFSGRTVKYFS 175 (462)
Q Consensus 163 G~i~gg~~~~~l~ 175 (462)
|.++|+.+...+.
T Consensus 160 g~~~g~~l~~~l~ 172 (399)
T PRK05122 160 ALAIGAPLGVLLY 172 (399)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877654
No 53
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.28 E-value=7e-09 Score=109.31 Aligned_cols=255 Identities=11% Similarity=-0.004 Sum_probs=153.0
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
+|-+.++.+++.+.+.... .+..|..|+++||+|||+++...+...++..++++.+... ..
T Consensus 59 ~~~s~~~~g~~~s~~~~~~-~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----~~-------------- 119 (467)
T PRK09556 59 YGLSTTELGMIGLGFSITY-GVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS----GS-------------- 119 (467)
T ss_pred cCCCHHHHHHHHHHHHHHH-HHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc----cc--------------
Confidence 5544678899988766544 5789999999999999999988877777666666653210 00
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCC
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGP 183 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp 183 (462)
.+.|...+++.+.++..+...+ ..-.+++|.++++|+.|..++..++.++|.++|+.+.....+.. .+
T Consensus 120 --------~~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~--~~- 187 (467)
T PRK09556 120 --------VSLGLMIALWALSGFFQSTGGP-CSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF--FD- 187 (467)
T ss_pred --------chHHHHHHHHHHHHHHHhccch-HHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh--cc-
Confidence 1456677777888877655556 46789999999999999999999999999999988775543211 11
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc------c-----c---cc--ccCCCCChHHHH-HHHhhcHH
Q 012495 184 GVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTR------S-----K---KK--KEKPKMGTMESL-KFLVSSRY 246 (462)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~------~-----~---~~--~~k~~~~~~~~l-~~i~~s~y 246 (462)
++|.... ....++...+.+..+.+.++. ||+ + + ++ +++++.+..+.+ +.++|+|.
T Consensus 188 --~~~~~~f---~~~g~~~~~~~i~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 259 (467)
T PRK09556 188 --GHVIGMF---IFPSIIALIIGFIGLRYGSDS---PEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPV 259 (467)
T ss_pred --CcchhHH---HHHHHHHHHHHHHHHHhCCCC---hhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChH
Confidence 1222111 111111111111122212221 211 0 0 00 001112223332 34788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHH
Q 012495 247 IRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKIT 320 (462)
Q Consensus 247 l~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~ 320 (462)
+..++...++.......+..-...+.++.++.+.+..+. .....++..++-..+.+++.+|+|-+....+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~---~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~ 330 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAIN---TFTLFEIGALVGSLLWGWLSDLANGRRALVAC 330 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 777777666665555455555555777766654433332 23344444444566788999999988765443
No 54
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.27 E-value=5e-09 Score=110.74 Aligned_cols=255 Identities=11% Similarity=0.091 Sum_probs=138.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhc----ccCc-hhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhC
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLAD----KLSK-QALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILG 102 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~----r~~r-~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~ 102 (462)
+..++.+.+..- ..-.+.-|+.|.++| |+|| ||.+......+++.+.++ .. .|+ .+
T Consensus 41 ~~~vg~i~~i~r-i~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll---f~------~p~---------~~ 101 (473)
T PRK10429 41 VGLVGTLFLVAR-IWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLL---FS------AHL---------FE 101 (473)
T ss_pred HHHHHHHHHHHH-HHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHH---Hc------CCC---------CC
Confidence 667788877654 444578899999999 4598 455444555544443222 11 111 00
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccC
Q 012495 103 PRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQIT-TVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNL 181 (462)
Q Consensus 103 ~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~-~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~ 181 (462)
.. ...+-..+.|+.-++..++... -+++...|++ |++||.|..+.-..++++|.++++.....+... .
T Consensus 102 ~~-------~~~~~~~~~~~l~~~~~t~~~i-p~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~---~ 170 (473)
T PRK10429 102 GT-------AQYVFVCVTYILWGMTYTIMDI-PFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNY---V 170 (473)
T ss_pred cc-------HHHHHHHHHHHHHHHHHHHHcc-hHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 00 0122233445444443333333 3899999999 799999999998888888877665544332211 2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc----ccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHH
Q 012495 182 GPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTR----SKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAY 257 (462)
Q Consensus 182 gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~----~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~ 257 (462)
|.... .. +......+.+++.+.......... +|. +.+++++++.+..+.++.++|+|.++.++...+++
T Consensus 171 g~~~~----~~-g~~~~~~i~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~ 243 (473)
T PRK10429 171 GGGDR----GF-GFQMFTLVLIAFFIVSTIITLRNV--HEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAY 243 (473)
T ss_pred CCCch----hh-hHHHHHHHHHHHHHHHHHHHHcCc--eecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 21110 00 101111111221111111011111 221 11122234567899999999999988888888877
Q ss_pred HHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH
Q 012495 258 GISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTV 323 (462)
Q Consensus 258 ~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~ 323 (462)
++..+........+.+....+++ . .+.+....++..++-..+.+++.||+|-+....+.-.+
T Consensus 244 ~~~~~~~~~~~~y~~~y~~~~~~-~---~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~ 305 (473)
T PRK10429 244 NIASNIINGFAIYYFTYVIGDAD-L---FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIF 305 (473)
T ss_pred HHHHHHHhhheeeEEEEECCCHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77666665544444443333322 2 23334444445554456678999999999887655553
No 55
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.27 E-value=1.4e-08 Score=105.03 Aligned_cols=343 Identities=13% Similarity=0.167 Sum_probs=186.3
Q ss_pred CchhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccC-chhHHHHHHHHHHHHHHHHHH
Q 012495 1 MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLS-KQALFYTVIVPFIAFFGAFGF 79 (462)
Q Consensus 1 ~~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~-r~~v~~~~l~~f~~~~~lf~~ 79 (462)
++|+-.+.++..-|.-.....+ .|-++++++.+..... .+.++..|.+|.++||.. ++|++.+.....++..++...
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~-~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGP-LARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888887765555 5756899999998665 455788899999999974 577776655544443322221
Q ss_pred HHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhH
Q 012495 80 LLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLG 159 (462)
Q Consensus 80 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag 159 (462)
. . +.|......+...+.-.-+++ +-=+.+.+... |.++-||-+=..
T Consensus 88 ~---------~----------------------~f~~~~~~~~l~~~~~~p~~p-l~dsi~~~~~~--~~~~~YG~iRlw 133 (400)
T PF03825_consen 88 S---------S----------------------SFWWLFVIMLLFSFFFSPTMP-LSDSIALSYLG--DRGKDYGRIRLW 133 (400)
T ss_pred h---------c----------------------cHHHHHHHHHHHHHHHccHHH-HHHHHHHHHcc--cccCCCCcchhh
Confidence 1 0 123222233333333223444 24444444433 678899999999
Q ss_pred HHHHHHhhhhhHH-HhhhhhccCCCCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcCCCcccc--c-cccCCCCC
Q 012495 160 ANVALIFSGRTVK-YFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGL--SICGLYWWVNNNVELPTRSK--K-KKEKPKMG 233 (462)
Q Consensus 160 ~~lG~i~gg~~~~-~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~--l~l~~~~~~~~~~~~p~~~~--~-~~~k~~~~ 233 (462)
+++|.++++.... ......+ .++ . .. .+ .+.+. +.+..+.+. .|+.++ + +++.++..
T Consensus 134 GSiGf~~~~~~~~~~~~~~~~-~~~-------~-~~--~~-~i~~~~~~ll~~~~l~-----lp~~~~~~~~~~~~~~~~ 196 (400)
T PF03825_consen 134 GSIGFIVAALAFGGLLGGYLG-ISG-------T-SL--IF-YIAAILSLLLAGFALF-----LPKTPPKRSAKESVKKLL 196 (400)
T ss_pred hhHHHHHHHHHHHHHHHhhhc-ccc-------c-cH--HH-HHHHHHHHHHHHHHHh-----CCCCccccccCCCccccc
Confidence 9999999865421 1111100 110 0 00 01 11111 111111111 132211 1 11111122
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhc
Q 012495 234 TMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFG 312 (462)
Q Consensus 234 ~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G 312 (462)
..+. ..++|+|......+..++.+.+....+.-...+.++.-..+.+.. | .....++++ +..++..+|++||+|
T Consensus 197 ~~~~-~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~---g-~~~~l~~~aEi~~f~~~~~~~~r~g 271 (400)
T PF03825_consen 197 GLDA-LKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTI---G-ILWALGVVAEIPFFFFSGRFLKRFG 271 (400)
T ss_pred chHH-HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHH---H-HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2344 357778877777777777777777766666666776532233221 2 122356666 667888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHH-HHHHHHHHHHHHHhhhhhcccc-chhhccccCCchh
Q 012495 313 WGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLA-AVYVGAMQNIFSKSAKYSLFDP-CKEMAYIPLDEDT 390 (462)
Q Consensus 313 ~~~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~-~v~~g~~~~~~~k~~~ysl~~p-~ke~l~~~l~~~~ 390 (462)
.++...+.-+. .++=+..++...++. |... .... .....+..|+++-+ +.+-+-...|+|.
T Consensus 272 ~~~ll~~a~~~---~~vR~~l~a~~~~~~----------~~~~~~~~l----~q~lhG~tf~~~~~a~~~yi~~~~p~~~ 334 (400)
T PF03825_consen 272 IKWLLLLALVA---YAVRWLLYAYFSDPW----------PFIVALQLL----GQLLHGLTFGLFHAASVRYIDRIAPPEL 334 (400)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhcCCc----------HHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHhCCccc
Confidence 99988766653 223333333331211 1111 0111 11234445655443 3444556678899
Q ss_pred hhccceeeeeecccchhhHHHHHHHHHH
Q 012495 391 KVKGKAAIDVVCNPLGKSGGALIQQFMI 418 (462)
Q Consensus 391 r~k~K~~iD~l~~r~Gk~~gs~i~~~l~ 418 (462)
|.++++.+-.+..=+|...|+.+...+.
T Consensus 335 ~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 335 RATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999998876666666666555554433
No 56
>PRK03699 putative transporter; Provisional
Probab=99.26 E-value=1.1e-08 Score=105.17 Aligned_cols=256 Identities=11% Similarity=-0.009 Sum_probs=139.6
Q ss_pred HHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 012495 10 TILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIH 89 (462)
Q Consensus 10 ~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~ 89 (462)
...-++.+.+..+ +|-+.++.+++...... ...+..+..|+++||+|||+++......+.+..++.++.
T Consensus 24 ~~~g~~~~~i~~~-~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~--------- 92 (394)
T PRK03699 24 IVTGMVMGPIAEY-FNLPVSSMSNTFTFLNA-GILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS--------- 92 (394)
T ss_pred HHHhhhhHHHHHH-hCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 3344444444433 45446778888876654 446789999999999999999877766655554443321
Q ss_pred CchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhh
Q 012495 90 PQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGR 169 (462)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~ 169 (462)
+ +.|...+.+...++......+ ..++.+.|.++.|++.+..+..+.+.++|..+++.
T Consensus 93 ~----------------------~~~~~~~~~~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 149 (394)
T PRK03699 93 H----------------------SLALFSIAMFVLGVVSGITMS-IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPI 149 (394)
T ss_pred c----------------------hHHHHHHHHHHHHHhhHhhcc-chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1 345555566666665555566 48889999999888888888888888888888877
Q ss_pred hHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHH
Q 012495 170 TVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRD 249 (462)
Q Consensus 170 ~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~ 249 (462)
+...+.. +. .+|...+.. . .+...+..... +..+ . |+.+++++++++.. .+.. .+|.+..
T Consensus 150 ~~~~l~~--~~-----~gw~~~f~~---~-~~~~~~~~~~~-~~~~-~--p~~~~~~~~~~~~~----~~~~-~~~~~~~ 209 (394)
T PRK03699 150 IAAYLLA--RS-----IEWYWVYAC---I-GLVYVAIFILT-LFSE-F--PALGKHAPKADKPV----AKEK-WGIGVLF 209 (394)
T ss_pred HHHHHHh--cc-----ccHHHHHHH---H-HHHHHHHHHHH-HhcC-C--ccccccCccccCcc----cccc-CChHHHH
Confidence 7655421 00 133322211 1 11111111111 1111 1 22111111111110 0111 1344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 250 LATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 250 l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
++...+++......+..-...+.++.++.+++..+. +.....+...+-..+.+++.+|+|.++.....-.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~---~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~ 279 (394)
T PRK03699 210 LAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGN---LVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAG 279 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhH---HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence 444455555444344444455666666644433332 2333333343344567889999999987665443
No 57
>PRK09952 shikimate transporter; Provisional
Probab=99.25 E-value=1.5e-08 Score=105.90 Aligned_cols=110 Identities=11% Similarity=0.026 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY 121 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy 121 (462)
.+.+-.+..|+++||+|||+++..+...+.+.-++.++. |+.... -....|...+++
T Consensus 76 ~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~~~~~--------------~~~~~~~l~~~R 132 (438)
T PRK09952 76 FRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL---------PSFSTI--------------GWWAPVLLVTLR 132 (438)
T ss_pred HHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC---------CcHHHH--------------HHHHHHHHHHHH
Confidence 344566889999999999999999888887776666542 221000 001233556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.++-.....+ ....+++|.+++|++.+..+....+.++|.++++.+...+.
T Consensus 133 ~l~G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 133 AIQGFAVGGEWG-GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHHhhhcccHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776555556 36789999999999999999999999999999887766554
No 58
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.24 E-value=1e-08 Score=106.95 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=90.1
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|-++++.+++.....+.. .+..+..|+++||+|||+++.++...+....+++++.
T Consensus 53 ~g~s~~~~g~~~~~~~~~~-~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------------------- 108 (434)
T PRK11663 53 LGLSRSDIGLLATLFYITY-GVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS----------------------- 108 (434)
T ss_pred cCCCHHHHHHHHHHHHHHH-HHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----------------------
Confidence 5544677888888666544 6899999999999999999888877776665544431
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|...+.++..++....... ...++++|.++.||+.+..++.+.+.++|.++|+.+.+.+.
T Consensus 109 --------~~~~~l~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 109 --------SSLWAFALLWVLNAFFQGWGWP-VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred --------hHHHHHHHHHHHHHHHHHccch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345555566666655444445 46789999999999999999999999999999988777654
No 59
>PRK10133 L-fucose transporter; Provisional
Probab=99.22 E-value=1.2e-07 Score=99.45 Aligned_cols=283 Identities=10% Similarity=-0.056 Sum_probs=153.7
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL 81 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l 81 (462)
||...+.....-++-|.+ .+.+|-++++.+++-..+.. ...+..+..|+++||+||||++......+++..+++....
T Consensus 35 ~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~-g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~ 112 (438)
T PRK10133 35 FFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYF-GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554 34466557788888887664 4568999999999999999999999888887776553211
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGAN 161 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~ 161 (462)
.++ +.|...+.+...++-...... ..-.+++|..+.+|+++..+...+..+
T Consensus 113 ------~a~----------------------~~~~ll~~r~l~G~g~g~~~~-~~~~~v~~~~~~~~~~~~~s~~~~~~~ 163 (438)
T PRK10133 113 ------EIM----------------------NYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_pred ------hcC----------------------CHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 111 344455555666665444444 467788898888888777888888888
Q ss_pred HHHHhhhhhHHHhhhhhccCCCC------------CchhHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccc-
Q 012495 162 VALIFSGRTVKYFSNLRKNLGPG------------VDGWAVSL--KGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKK- 226 (462)
Q Consensus 162 lG~i~gg~~~~~l~~~~~~~gp~------------~~~~~~~~--~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~- 226 (462)
+|..+|+.+...+.... .++. ..+|.... +...++..+.+...+.......+.. ||.++++
T Consensus 164 ~G~~~g~~~g~~l~~~~--~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~--p~~~~~~~ 239 (438)
T PRK10133 164 FGAIIAVVFGQSLILSN--VPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNH 239 (438)
T ss_pred HHHHHHHHHHHHHHhcC--CcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcccc
Confidence 88888887765433100 0100 00121110 0111111111111111111112222 3321111
Q ss_pred ccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhH
Q 012495 227 KEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKL-KAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQ 305 (462)
Q Consensus 227 ~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~-~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~ 305 (462)
+++++.+..+..+.++++|......+..+++.........-...+. ++..+.++... |......++..++--++.+
T Consensus 240 ~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~a---g~~~~~~~~~~~vG~~~~g 316 (438)
T PRK10133 240 SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFA---ANYLTGTMVCFFIGRFTGT 316 (438)
T ss_pred ccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 1111223456677788888765544444444433221221112232 33334333222 2233343443343456788
Q ss_pred HHHHHhchhHHHHHHHH
Q 012495 306 FVFDKFGWGVAAKITPT 322 (462)
Q Consensus 306 ~li~r~G~~~~~~i~P~ 322 (462)
++.+|+|.++.+...-.
T Consensus 317 ~l~~r~g~~~~l~~~~~ 333 (438)
T PRK10133 317 WLISRFAPHKVLAAYAL 333 (438)
T ss_pred HHHHHcCHHHHHHHHHH
Confidence 99999999988766644
No 60
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.22 E-value=5.2e-08 Score=103.12 Aligned_cols=131 Identities=5% Similarity=-0.168 Sum_probs=85.1
Q ss_pred HHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012495 9 YTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAI 88 (462)
Q Consensus 9 y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~ 88 (462)
....-|..+.+..+ +|-+.++..++.+... ....+..+..|+++||+|||+++......+++...+.++.
T Consensus 52 ~~~~~~~~~~l~~~-~gls~~~~g~~~~~~~-~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-------- 121 (476)
T PLN00028 52 TFAAAPLLPIIRDN-LNLTKSDIGNAGIASV-SGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-------- 121 (476)
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh--------
Confidence 33344554444333 4544567787766544 4556778999999999999999877776666655444431
Q ss_pred CCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhh
Q 012495 89 HPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSG 168 (462)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg 168 (462)
+ +.|...+.+...++......+ ...+++|.++.+++.+..++...++++|..+++
T Consensus 122 -~----------------------s~~~l~~~r~l~G~~~~~~~~--~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~ 176 (476)
T PLN00028 122 -S----------------------SATGFIAVRFFIGFSLATFVS--CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQ 176 (476)
T ss_pred -c----------------------CHHHHHHHHHHHHHHHHhhHH--HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHH
Confidence 1 233344445555544433222 334689999999999999999888888888776
Q ss_pred hhHHHh
Q 012495 169 RTVKYF 174 (462)
Q Consensus 169 ~~~~~l 174 (462)
.+....
T Consensus 177 ~~~~~i 182 (476)
T PLN00028 177 LLMPLV 182 (476)
T ss_pred HHHHHH
Confidence 655443
No 61
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.21 E-value=9.1e-08 Score=101.15 Aligned_cols=138 Identities=10% Similarity=0.012 Sum_probs=102.1
Q ss_pred hhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012495 4 CILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYP 83 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p 83 (462)
+..+.+..+-++.|.+..+ +|-++++..++.....+ ...+..+..|+++||+|||+++......++....+.++.
T Consensus 31 ~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--- 105 (496)
T PRK03893 31 LDGFDFVLITLVLTEVQGE-FGLTTVQAASLISAAFI-SRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA--- 105 (496)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH---
Confidence 3344555555555555433 55446677888776654 446788999999999999999887776666655544431
Q ss_pred cccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHH
Q 012495 84 LSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVA 163 (462)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG 163 (462)
.+.|...+.+.+.++......+ ...+++.|.++.|++.|.+++...+.++|
T Consensus 106 ----------------------------~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 156 (496)
T PRK03893 106 ----------------------------PGYWTLFIARLVIGMGMAGEYG-SSATYVIESWPKHLRNKASGFLISGFSIG 156 (496)
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 1456666777788776656666 47899999999999999999999999999
Q ss_pred HHhhhhhHHHhh
Q 012495 164 LIFSGRTVKYFS 175 (462)
Q Consensus 164 ~i~gg~~~~~l~ 175 (462)
.++|+.+...+.
T Consensus 157 ~~~~~~~~~~l~ 168 (496)
T PRK03893 157 AVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHh
Confidence 999998887654
No 62
>TIGR00898 2A0119 cation transport protein.
Probab=99.20 E-value=2.3e-08 Score=106.06 Aligned_cols=113 Identities=7% Similarity=-0.006 Sum_probs=88.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
+.+.++..+...+ ..++..++.|+++||+|||+++..+.....+..++.++.
T Consensus 126 ~~~~~~~~s~~~~-g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--------------------------- 177 (505)
T TIGR00898 126 AWKVDLTQSCFFV-GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--------------------------- 177 (505)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc---------------------------
Confidence 4567777776654 446889999999999999999887776665554443321
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
.+.|...+++...++......+ ..+++++|.++++++.+..++...+.++|.++++.+...
T Consensus 178 ----~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 178 ----PNYTVFLVFRLLVGMGIGGIWV-QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred ----ccHHHHHHHHHHHHhhccchHH-HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1457777888888887777777 599999999999999999999999999999988876654
No 63
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.20 E-value=1e-09 Score=114.25 Aligned_cols=336 Identities=13% Similarity=0.098 Sum_probs=190.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhc----ccCchhHHHHH-HHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhC
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLAD----KLSKQALFYTV-IVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILG 102 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~----r~~r~~v~~~~-l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~ 102 (462)
+...+.+....- ..-.+.-|+.|.++| |+||||-+... .....+.+.+... -+|.....
T Consensus 36 ~~~~g~i~~~~~-i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~--------~~p~~~~~------- 99 (428)
T PF13347_consen 36 PALAGLILLVGR-IWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFS--------PPPAGLSF------- 99 (428)
T ss_pred HHHHHHHHHHHH-HhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhc--------cccchhhh-------
Confidence 556677666544 344578899999999 79987766543 3333333322211 11211000
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccC
Q 012495 103 PRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITT-VDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNL 181 (462)
Q Consensus 103 ~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~-~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~ 181 (462)
.. .-.|. .+.|+.-++..++... -.+++.+|.++ +|||.|..+.-..+.++|.++.+.+...+.+. .
T Consensus 100 -~~------~~~~~-~~~~~l~~~~~t~~~i-~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~---~ 167 (428)
T PF13347_consen 100 -TA------KLVWL-FVFYILFDIAYTFVQI-PYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSW---F 167 (428)
T ss_pred -hh------HHHHH-HHHHHHHHHhhhhccC-chhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh---h
Confidence 00 01243 3444444554444444 48999999997 68999999999999999987666655544321 2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-cccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 012495 182 GPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPT-RSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGIS 260 (462)
Q Consensus 182 gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~-~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~ 260 (462)
|..... ...... ..+.+++.+.......... +| +++.++++++.+..+.++.++|+|..+.+.+..++..+.
T Consensus 168 g~~~~~--~~~~~~---~~v~~iv~~v~~~i~~~~~--ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~ 240 (428)
T PF13347_consen 168 GGGDTS--NGYRWM---ALVLAIVGLVFFLITFFFV--KERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLA 240 (428)
T ss_pred ccCccc--hHHHHH---HHHHHHHHHHHhhhhhhee--eeccccccccccccccccchhhhcccchHHHHHHHHHHHHhh
Confidence 221110 011111 1222222222221111111 22 222334445567889999999999998888888888888
Q ss_pred HHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012495 261 INLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDP 340 (462)
Q Consensus 261 ~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~l~~~~~ff~l~~~~~~ 340 (462)
.++.......+.++..++++.. +.+.....+.+++...+.+++.||+|-+++....-++.. ++...+.+....
T Consensus 241 ~~~~~~~~~y~~~~vl~~~~~~----~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~---~~~~~~~~~~~~ 313 (428)
T PF13347_consen 241 FALMNTFLPYYFTYVLGNEGLI----SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAA---LGFLLLFFLGPG 313 (428)
T ss_pred hhhhhhHHHHHHHHHhcCchhh----HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHH---HHHHHHHHHHhh
Confidence 8888888888888777766422 223344455555566777999999999998887777543 333333332210
Q ss_pred CCchhhcccchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccCCchhhhc-------cceeeeeecccchhhHHHHH
Q 012495 341 LGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVK-------GKAAIDVVCNPLGKSGGALI 413 (462)
Q Consensus 341 ~~~~~~~~~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k-------~K~~iD~l~~r~Gk~~gs~i 413 (462)
++....+ -.......++..-+.-..+..-+-++++.| .-..+.++..|+|.++|+.+
T Consensus 314 ----------~~~~~~i------~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 314 ----------SPWLVLI------LFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred ----------hHHHHHH------HHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 0111000 111122244444444444444444433222 33456788889999999988
Q ss_pred HHHHHHHh
Q 012495 414 QQFMILTF 421 (462)
Q Consensus 414 ~~~l~~~~ 421 (462)
...++...
T Consensus 378 ~g~~l~~~ 385 (428)
T PF13347_consen 378 VGLLLALV 385 (428)
T ss_pred HHHHHHHh
Confidence 77666554
No 64
>TIGR00895 2A0115 benzoate transport.
Probab=99.18 E-value=2.8e-09 Score=108.08 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=94.9
Q ss_pred HhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 012495 11 ILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHP 90 (462)
Q Consensus 11 ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~ 90 (462)
..-+..+.+..+ .|-++++.+++.....+ ..++..+..|+++||+|||+.+........+...++++. +
T Consensus 35 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------~ 103 (398)
T TIGR00895 35 AMGFAAPAISAE-WGLDPVQLGFLFSAGLI-GMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA---------T 103 (398)
T ss_pred HHHhhHHHHhhc-cCCCHHHHHHHHHHHHH-HHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc---------c
Confidence 333334433333 45446778888886664 446889999999999999999888776666655444431 1
Q ss_pred chHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhh
Q 012495 91 QALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRT 170 (462)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~ 170 (462)
+.|...+.++..++......+ ..+++++|.++.+++.+.+++...+.++|..+|+.+
T Consensus 104 ----------------------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 160 (398)
T TIGR00895 104 ----------------------NVTQLLILRFLAGLGLGGLMP-NLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL 160 (398)
T ss_pred ----------------------chHHHHHHHHHHhcccccchh-hHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHH
Confidence 334455556666665555566 589999999999999999999999999999999988
Q ss_pred HHHhh
Q 012495 171 VKYFS 175 (462)
Q Consensus 171 ~~~l~ 175 (462)
...+.
T Consensus 161 ~~~l~ 165 (398)
T TIGR00895 161 AGWLI 165 (398)
T ss_pred HHHHh
Confidence 87654
No 65
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.18 E-value=3.9e-08 Score=101.30 Aligned_cols=248 Identities=10% Similarity=0.025 Sum_probs=147.9
Q ss_pred hccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchH
Q 012495 14 DTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQAL 93 (462)
Q Consensus 14 ~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~ 93 (462)
|+.|.+..+ +|-+.++.+++.+.+.+.. .+..|..|++.||+|||+++......+++..++.++. |
T Consensus 30 ~~lp~i~~~-~~~s~~~~g~~~s~~~~~~-~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a---------~--- 95 (393)
T PRK09705 30 PLLPQLRQA-SGMSFSVAALLTALPVVTM-GGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY---------P--- 95 (393)
T ss_pred hhHHHHHHH-hCCCHHHHHHHHHHHHHHH-HHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC---------c---
Confidence 334443333 5544677899888776544 6889999999999999999999999998888777652 1
Q ss_pred HHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 94 ADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
+.|...+.++..++-.....+ ..-+.++|.++ ||+.+..+...++.+.|..+|+.+...
T Consensus 96 -------------------~~~~ll~~r~l~Gig~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~ 154 (393)
T PRK09705 96 -------------------QSALLLSSALLGGVGIGIIQA-VMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPW 154 (393)
T ss_pred -------------------chHHHHHHHHHHHhHHHHHhh-hhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777766555 46678899887 888999999999999999998888776
Q ss_pred hhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHH
Q 012495 174 FSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATL 253 (462)
Q Consensus 174 l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~ 253 (462)
+.+. ..+|..... ...+.+.+.+.......+. .|++++ +++... +..+++|....++..
T Consensus 155 l~~~-------~~~w~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~----~~~l~~~~~~~l~~~ 213 (393)
T PRK09705 155 LVQH-------SETWYQTLA----WWALPAVVALFAWWWQSAR--EVASSH----KTTTTP----VRVVFTPRAWTLGVY 213 (393)
T ss_pred HHHh-------cCCHHHHHH----HHHHHHHHHHHHHHHHhcC--CCcccc----CCCcCC----cccccCHhHHHHHHH
Confidence 5421 113432211 1111122222222112211 122111 111111 123345555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHH
Q 012495 254 VVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITP 321 (462)
Q Consensus 254 v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P 321 (462)
..+.+.....+......+.++ ++.+.+.. |......++..++-..+.+++.||+|-+....+.-
T Consensus 214 ~~~~~~~~~~~~~~lp~~l~~-~g~s~~~a---g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~ 277 (393)
T PRK09705 214 FGLINGGYASLIAWLPAFYIE-IGASAQYS---GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLAL 277 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCChhhh---hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 444444444444445555554 44434322 33455556655554556789999999887665543
No 66
>PRK15075 citrate-proton symporter; Provisional
Probab=99.14 E-value=8.9e-08 Score=99.89 Aligned_cols=236 Identities=12% Similarity=0.099 Sum_probs=122.5
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHH
Q 012495 45 GFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMA 124 (462)
Q Consensus 45 ~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~ 124 (462)
+..+..|+++||+||||++......+.....++++. ++..... ....+...+.+++.
T Consensus 71 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~---------~~~~~~~--------------~~~~~~l~~~R~l~ 127 (434)
T PRK15075 71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV---------PGYATIG--------------LAAPLLVLLGRLLQ 127 (434)
T ss_pred hHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC---------CcHHHHH--------------HHHHHHHHHHHHHh
Confidence 346788999999999999998888777776666542 1100000 00001234455666
Q ss_pred HHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCC---CchhHHHHHHHHHHHHH
Q 012495 125 ELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPG---VDGWAVSLKGMMSIVVL 201 (462)
Q Consensus 125 el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~---~~~~~~~~~~l~~~~~~ 201 (462)
++-.....+ ....+++|.+++|++.|..++...+.++|..+|+.+...+.... .|. .-+|-. .+ .+
T Consensus 128 G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~---~~~~~~~~gWr~------~f-~~ 196 (434)
T PRK15075 128 GFSAGVELG-GVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWL---SPAQMAEWGWRI------PF-LI 196 (434)
T ss_pred hccccccHH-HHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHhccchHH------HH-HH
Confidence 665444455 36789999999999999999999988888877776655443211 110 012221 11 21
Q ss_pred HHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCChh
Q 012495 202 MGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLA-TLVVAYGISINLVEVTWKSKLKAQFPSPN 280 (462)
Q Consensus 202 ~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~-~~v~~~~~~~~l~e~~~~~~~~~~~~~~~ 280 (462)
.... +....+.++.. ||+++.++++++.+..+.++.+.+++...... ..........+.+......+.++..+-++
T Consensus 197 ~~~~-~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~ 273 (434)
T PRK15075 197 GCLI-VPFIFLIRRSL--EETEEFLARKHRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSA 273 (434)
T ss_pred HHHH-HHHHHHHHHhc--CCCHHHHHhhhccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 1111 12222233333 33221111111112223344444554332222 22222233333344444555665444433
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHH
Q 012495 281 EYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKIT 320 (462)
Q Consensus 281 ~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~ 320 (462)
+.... .....++..++...+.+++.+|+|-|+...+.
T Consensus 274 ~~~~~---~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~ 310 (434)
T PRK15075 274 ADSLL---VTLCVGVSNFIWLPIGGALSDRIGRRPVLIAF 310 (434)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 32222 23344444444456678999999988765543
No 67
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.14 E-value=2.3e-07 Score=96.71 Aligned_cols=242 Identities=12% Similarity=0.017 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY 121 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy 121 (462)
+..+..++.|+++||+||||++..++..+++.-++.++. |+... +.....+...+++
T Consensus 75 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~~~~--------------~~~~~~~~l~~~R 131 (432)
T PRK10406 75 MRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL---------PGYET--------------IGTWAPALLLLAR 131 (432)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc---------CCchh--------------HHHHHHHHHHHHH
Confidence 445778899999999999999999988887776665542 21000 0011234456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHH
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVL 201 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~ 201 (462)
+..++-.....+ ...++++|.++++|+.+..+....+.+.|.++++.+...+........-...+|-.. + .+
T Consensus 132 ~l~G~g~g~~~~-~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~------F-~i 203 (432)
T PRK10406 132 LFQGLSVGGEYG-TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIP------F-AL 203 (432)
T ss_pred HHHHhhhhhhHh-hHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHH------H-HH
Confidence 777776555666 478999999999999999999888888888877765544432210000001133222 1 22
Q ss_pred HHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCChh
Q 012495 202 MGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVA-YGISINLVEVTWKSKLKAQFPSPN 280 (462)
Q Consensus 202 ~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~-~~~~~~l~e~~~~~~~~~~~~~~~ 280 (462)
.+...+... +.++.. ||+++.++++++. ..+++.++|+|....++....+ .......+..-...+.++.++.+.
T Consensus 204 ~~~~~ll~~-~~~~~~--~e~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~ 278 (432)
T PRK10406 204 GAVLAVVAL-WLRRQL--DETSQQETRALKE--AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHA 278 (432)
T ss_pred HHHHHHHHH-HHHhcC--CCCchHHHhhhcc--cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 222222222 233333 3332211111110 1235556677765443333222 122222222223344444444333
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 281 EYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 281 ~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
+... .......+...+-..+.+++.+|+|-|....+..+
T Consensus 279 ~~~~---~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~ 317 (432)
T PRK10406 279 NVAS---GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGS 317 (432)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 2222 22333333333323345899999999887655444
No 68
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.12 E-value=4.5e-08 Score=98.96 Aligned_cols=251 Identities=10% Similarity=-0.010 Sum_probs=135.2
Q ss_pred HhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 012495 11 ILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHP 90 (462)
Q Consensus 11 ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~ 90 (462)
..-|+-|.+..+ +|-+.++.+++.....+ ...+..+..|+++||+||||++......+....++. . .+
T Consensus 18 ~~~~~lp~l~~~-~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~---------~~ 85 (355)
T TIGR00896 18 SVGPLLPQIRSA-LGMSFSVAGLLTALPVL-CFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S---------AP 85 (355)
T ss_pred cCcccHHHHHHH-hCCCHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H---------hc
Confidence 344555544444 55456778888887765 446899999999999999999877665544433222 1 01
Q ss_pred chHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhh
Q 012495 91 QALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRT 170 (462)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~ 170 (462)
+.|...+.+...++......+ .....+.|.++ +++.|..+..+.+.++|..+|+.+
T Consensus 86 ----------------------~~~~l~~~~~~~g~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~ 141 (355)
T TIGR00896 86 ----------------------GTALLFAGTALIGVGIAIINV-LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAA 141 (355)
T ss_pred ----------------------cHHHHHHHHHHHHHHHHHHhc-cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHH
Confidence 233334444555554444444 36677888885 688899999999999999988877
Q ss_pred HHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHH
Q 012495 171 VKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDL 250 (462)
Q Consensus 171 ~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l 250 (462)
...+.+. .+ ++|...+.. . .+...+. ...++.+.. +++++++++++ ...+.++|+|....+
T Consensus 142 ~~~l~~~---~~---~~w~~~f~~---~-~~~~~~~--~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~ 202 (355)
T TIGR00896 142 TVPLAQH---SG---GHWQQALAW---W-ALPALLA--LLAWIPQVR---RRVAANQTTTR----LTPVRIWRSPLAWQV 202 (355)
T ss_pred HHHHHHh---hh---hhHHHHHHH---H-HHHHHHH--HHHHhhhhc---cccCCCCCCCC----CCCchhhcCHhHHHH
Confidence 7655321 10 113221110 0 1111111 111122111 11111111111 123345677876665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhch-hHHHHHH
Q 012495 251 ATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGW-GVAAKIT 320 (462)
Q Consensus 251 ~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~-~~~~~i~ 320 (462)
+....+.......+......+.++ .+.+++. .|......++..++-..+.+++.+|+|. +....+.
T Consensus 203 ~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~---~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~ 269 (355)
T TIGR00896 203 TVFFGLQSGLYYSLIGWLPAILIS-HGASAAT---AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVL 269 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Confidence 555444444443333333445544 3443322 2334555566665556678899999954 4444443
No 69
>PRK09669 putative symporter YagG; Provisional
Probab=99.10 E-value=1.2e-07 Score=99.19 Aligned_cols=250 Identities=17% Similarity=0.145 Sum_probs=135.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcc----cCchhH-HHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhC
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADK----LSKQAL-FYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILG 102 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r----~~r~~v-~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~ 102 (462)
+...+.+....-+ .-.+.-|+.|.++|| +||||- +......+++.+.+. + .. |+. +
T Consensus 44 ~~~~g~i~~i~~i-~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~-f-~~-------p~~---------~ 104 (444)
T PRK09669 44 AAIMGTMFLVVRV-LDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT-F-YT-------PDF---------G 104 (444)
T ss_pred HHHHHHHHHHHHH-HHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHH-H-hC-------CCC---------C
Confidence 5677777776554 345788999999999 677444 444444444443211 1 11 110 0
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhC-ChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhcc
Q 012495 103 PRFLGPLAIMRIWSFCLFYVMAEL-WGSVVISVLFWGFANQIT-TVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKN 180 (462)
Q Consensus 103 ~~~~~~i~~~~~w~~~~fyv~~el-~~~~~~s~lfwa~~ndi~-~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~ 180 (462)
. ..+.|-..+.|+..+. ++...++ .++..+|.+ |++||.|..+.-..++++|..+++.+...+...
T Consensus 105 ~-------~~~~~~~~~~~~l~~~~~t~~~ip--~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~--- 172 (444)
T PRK09669 105 A-------TGKIIYACVTYILLSLVYTAINVP--YCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI--- 172 (444)
T ss_pred c-------chHHHHHHHHHHHHHHHHHhhcch--HHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 0 0133444455544444 4433444 789999998 679999999999889999888877655433321
Q ss_pred CCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHHH
Q 012495 181 LGPGV--DGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYG 258 (462)
Q Consensus 181 ~gp~~--~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~ 258 (462)
.|... .+|. . ...+.+.++.......-.. .+|..++ +++++.+..+.++.++|+|..+.++...+++.
T Consensus 173 ~~~~~~~~g~~------~-~~~i~~ii~~v~~~~~~~~--~~e~~~~-~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~ 242 (444)
T PRK09669 173 LGKGDEQKGYF------Y-AMMVMGLLGVVLFFCCFFM--TKERYTP-EVDNSSSVWKDLKLLLGNSQWRIMFIFNVVLL 242 (444)
T ss_pred hCCCchhhhHH------H-HHHHHHHHHHHHHHHHhCC--eEEecCC-CCcCCCCHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 22111 1111 1 1122222221111100001 1121111 11233457889999999999888777776666
Q ss_pred HHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 259 ISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 259 ~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
............+.+...++ ++... .+.....+.++++..+.+++.+|+|-+....+.-+
T Consensus 243 ~~~~~~~~~~~y~~~~~~~~-~~~~~---~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~ 302 (444)
T PRK09669 243 TAVVTRGGATLYYVNYVLLR-PDLAT---LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIV 302 (444)
T ss_pred HHHHHHhhhhheeeeeecCC-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 66655544433344433333 22222 12222223335577788899999999888766543
No 70
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.10 E-value=1.5e-07 Score=98.83 Aligned_cols=245 Identities=11% Similarity=0.041 Sum_probs=133.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
|-++++.++..+...+.. .+..|..|+++||+|||+++..+...+++..+++++.-. .+
T Consensus 59 g~s~~~~g~~~~~~~i~~-~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~-----~~--------------- 117 (452)
T PRK11273 59 GFSRGDLGFALSGISIAY-GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW-----AT--------------- 117 (452)
T ss_pred CCCHHHHHHHHHHHHHHH-HHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc-----cc---------------
Confidence 444778888888766544 579999999999999999998888877777666654210 00
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHH-HhhhhhccCCC
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVK-YFSNLRKNLGP 183 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~-~l~~~~~~~gp 183 (462)
.+.|.....+.+.++......+ .....+.|.+++||+.+.+++.+.+.++|..+++.+.. ....
T Consensus 118 -------~~~~~~~~~~~l~gi~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~------- 182 (452)
T PRK11273 118 -------SSIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW------- 182 (452)
T ss_pred -------ccHHHHHHHHHHHHHHHhccch-HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------
Confidence 0234444555566665544444 25567889999999999999999999998654443322 1110
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCcccc--c-------cccCCCCChHHHH-HHHhhcHHHHHH
Q 012495 184 GVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVE---LPTRSK--K-------KKEKPKMGTMESL-KFLVSSRYIRDL 250 (462)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~---~p~~~~--~-------~~~k~~~~~~~~l-~~i~~s~yl~~l 250 (462)
..+|...+.. .........+....++++..+ .++.++ + ++++++.+..+.+ +.++|+|.+..+
T Consensus 183 -~~gw~~~f~i---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (452)
T PRK11273 183 -FNDWHAALYM---PAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYI 258 (452)
T ss_pred -hccHHHHHHH---HHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHH
Confidence 1133322210 001111111122222332211 010000 0 0001111233432 347788987776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhc
Q 012495 251 ATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFG 312 (462)
Q Consensus 251 ~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G 312 (462)
.+...+.......+..-...+.++..+-+.+.++. .....++..++-.++.+++.+|++
T Consensus 259 ~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~---~~~~~~~~~~~g~~~~G~l~dr~~ 317 (452)
T PRK11273 259 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSW---AYFLYEYAGIPGTLLCGWMSDKVF 317 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666655555455555566666654433323332 233333333333456788888873
No 71
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.07 E-value=9e-07 Score=90.78 Aligned_cols=269 Identities=12% Similarity=0.018 Sum_probs=137.3
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHH-HHHHHHHHHHHHHHHH-HhcccCchhHHHHHHHHHHHHHHHHHHH
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKT-WVNLPMAIGFMLLYTK-LADKLSKQALFYTVIVPFIAFFGAFGFL 80 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~-~~~l~~~~~~~~~~~~-L~~r~~r~~v~~~~l~~f~~~~~lf~~~ 80 (462)
|.=...+++..|.-+....+ .|-++++++.+.. ......+++..|++++ .+||.||||...+...... ...+.++.
T Consensus 11 ~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~-~~~~~~~~ 88 (390)
T TIGR02718 11 LSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV-SACLASLA 88 (390)
T ss_pred HHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH-HHHHHHHH
Confidence 33345567888888888876 5777899999842 2234567889999966 7899999998544432211 11112221
Q ss_pred HhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHH
Q 012495 81 LYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGA 160 (462)
Q Consensus 81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~ 160 (462)
.. .+. . ....|...+..+ .....+..-. ..=+++.|..+.++....-+....|.
T Consensus 89 ~~------~~~---~---------------~~~~~~~~~~~~-~~~~~a~~d~-~~d~~~~~~~~~~~~~~~~~~~~~g~ 142 (390)
T TIGR02718 89 LV------GPD---V---------------AGAGWAVGLLAC-ASLASATQDI-ATDGMAAEHFNGRTLAKGNAVQIAGV 142 (390)
T ss_pred cC------Ccc---h---------------hhHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHhCCHhhhhHHHHHHHHHH
Confidence 11 010 0 001232222111 1111111111 11122333333333333344456666
Q ss_pred HHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHH
Q 012495 161 NVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKF 240 (462)
Q Consensus 161 ~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~ 240 (462)
.+|.++|+.....+.+. .| |.... .+.+.+.+.......... |+++++++ + +.+..+.++.
T Consensus 143 ~lG~~~g~~~~~~l~~~---~g-----w~~~f-------~~~a~l~~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~~~~ 203 (390)
T TIGR02718 143 MIGFFGGGAGTLVLFGK---FG-----QRPAF-------LLVACVPLASLVCVLWLK--DRAVASPE-A-PLARRASLFR 203 (390)
T ss_pred HHHHHHHHHHHHHHHHH---hC-----HHHHH-------HHHHHHHHHHHHHHHHcC--CCCcCccc-c-chhhHHHHHH
Confidence 78888887665554421 21 22111 111111111110000111 11111111 1 1112345677
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhchhHHHHH
Q 012495 241 LVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFGWGVAAKI 319 (462)
Q Consensus 241 i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G~~~~~~i 319 (462)
++|+|.+..+....+++..+....+.....+.+|. ..+++. .|......++.. +++.++.+++.+|+|.++.+..
T Consensus 204 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-G~s~~~---ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~ 279 (390)
T TIGR02718 204 FFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDA-GWPLEW---IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFIL 279 (390)
T ss_pred HHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhc-CCCHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888877777777788877777777666777764 444433 344455555544 4467889999999999988765
Q ss_pred HHH
Q 012495 320 TPT 322 (462)
Q Consensus 320 ~P~ 322 (462)
.-+
T Consensus 280 ~~~ 282 (390)
T TIGR02718 280 GVG 282 (390)
T ss_pred HHH
Confidence 443
No 72
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.07 E-value=2.9e-07 Score=95.60 Aligned_cols=283 Identities=10% Similarity=-0.043 Sum_probs=156.6
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL 81 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l 81 (462)
||+..+.+++.-|+-+.+-. .+|-+..+.+++-..... ..++..+..+++.||+|||+.+......+++..+++....
T Consensus 12 f~~~G~~~~~~~~l~~~~~~-~~~~s~~~~g~l~s~~~~-g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~ 89 (410)
T TIGR00885 12 FALWGFANDITNPMVPQFQQ-AFTLTAFQAALVQSAFYG-GYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA 89 (410)
T ss_pred HHHHHHHHHhHHHHHHHHHH-HhCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776643 366556778888886664 5578999999999999999999988887777766554321
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGAN 161 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~ 161 (462)
. . .+.|...+.+.+.++-.....+ ..-.++++..++|++.|..++.....+
T Consensus 90 ~------~----------------------~~~~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (410)
T TIGR00885 90 E------I----------------------MNYTLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNP 140 (410)
T ss_pred h------h----------------------ccHHHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHH
Confidence 0 0 1334444444555554333333 355788899999999999999999999
Q ss_pred HHHHhhhhhHHHhhhhh-c--------cCCCCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCC
Q 012495 162 VALIFSGRTVKYFSNLR-K--------NLGPGVDGW--AVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKP 230 (462)
Q Consensus 162 lG~i~gg~~~~~l~~~~-~--------~~gp~~~~~--~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~ 230 (462)
+|..+|+.+...+.... + ..+|+...+ +.+.......+.+.+.+.+....... ..+.|+.+++++ +
T Consensus 141 lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~--~ 217 (410)
T TIGR00885 141 FGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDA--K 217 (410)
T ss_pred HHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccc--c
Confidence 99999988877664211 0 000100000 00011111111222222221111111 112343211111 1
Q ss_pred CCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHH
Q 012495 231 KMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQF-PSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVF 308 (462)
Q Consensus 231 ~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~-~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li 308 (462)
+.+..+..+.++|+|.+...++..++|.............+.++.. +.+++..+. +... .... .+--++.+++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~---~~~~-~~~~~~vGR~~~~~l~ 293 (410)
T TIGR00885 218 QISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAAN---YNIG-AMVIFFISRFIGTWLI 293 (410)
T ss_pred cccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHH---HHHH-HHHHHHHHHHHHHHHH
Confidence 2234456667788888776666666665555333333334443322 212222111 1111 1111 12345667889
Q ss_pred HHhchhHHHHHHHH
Q 012495 309 DKFGWGVAAKITPT 322 (462)
Q Consensus 309 ~r~G~~~~~~i~P~ 322 (462)
+|++.++.+.+.-+
T Consensus 294 ~r~~~~~~l~i~~~ 307 (410)
T TIGR00885 294 SYLAAHKVLMAYAI 307 (410)
T ss_pred HHcCHHHHHHHHHH
Confidence 99999987766544
No 73
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.06 E-value=4.4e-07 Score=92.92 Aligned_cols=200 Identities=12% Similarity=0.090 Sum_probs=114.2
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
+|-++++++++-..+.+ ...+..+..|+++||+|||++....+..+....... . .+
T Consensus 21 ~~~s~~~~g~~~s~~~~-g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~---~-------~~------------- 76 (368)
T TIGR00903 21 IDVSKEELGLLAITYPA-AFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL---L-------DP------------- 76 (368)
T ss_pred hCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH---H-------Hh-------------
Confidence 44446788888776554 445677889999999999988655444333321100 0 00
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCC
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGP 183 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp 183 (462)
.+.|...+.++..++-... .. ..+..++|.+++||+.|..++...+.++|.++++.+...+.+.
T Consensus 77 --------~~~~~l~~~R~l~G~g~~~-~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------ 140 (368)
T TIGR00903 77 --------FNYEWLLACQLLAALGQPF-LL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------ 140 (368)
T ss_pred --------ccHHHHHHHHHHHHhHhHH-HH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------
Confidence 0345566666776655433 33 3677779999999999999999999999999998877766421
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccc-CCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 012495 184 GVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKE-KPKMGTMESLKFLVSSRYIRDLATLVVAYGISIN 262 (462)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~-k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~ 262 (462)
.+|...+ ... .+.+.+.....+ ... ||+++++++ ++..+..+.++.++|+|.+..++....+......
T Consensus 141 --~gWr~~f---~~~-~~l~~~~~~~~~---~~l--p~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 209 (368)
T TIGR00903 141 --GGLQLLI---IPI-AAVAAAGIILVL---AAL--PALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFD 209 (368)
T ss_pred --cchHHHH---HHH-HHHHHHHHHHHH---HHc--CCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 1343221 100 111111111111 111 332211111 1111123467889999998777777666665555
Q ss_pred HHHHHHHHHHHh
Q 012495 263 LVEVTWKSKLKA 274 (462)
Q Consensus 263 l~e~~~~~~~~~ 274 (462)
.+..-...+.++
T Consensus 210 ~~~~wlp~~L~~ 221 (368)
T TIGR00903 210 NLAIWLEAALRP 221 (368)
T ss_pred HHHHHHHHHHHH
Confidence 444323334443
No 74
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.05 E-value=8.1e-08 Score=98.76 Aligned_cols=271 Identities=13% Similarity=0.175 Sum_probs=152.8
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHH---HHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFI---AFFGAFG 78 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~---~~~~lf~ 78 (462)
+|+-.+.+++.-|.-.--..+..|-++++++.+..... .+.+++.|+||.++||.+.||-+...+.... +.|+++.
T Consensus 16 ~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~-~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v 94 (412)
T PF01306_consen 16 YFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGS-LFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYV 94 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHH-HHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667776666544443333444789999999766 4668999999999999997775544443222 2222211
Q ss_pred HHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhCChhhhhh--
Q 012495 79 FLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAEL-----WGSVVISVLFWGFANQITTVDEAKR-- 151 (462)
Q Consensus 79 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el-----~~~~~~s~lfwa~~ndi~~~~qakR-- 151 (462)
..|.. | .|.|... +..++ ++ ...++ . |....|.++|
T Consensus 95 --~~pll---~----------------------~n~~lg~---iig~i~l~~~f~-~~~~~-~-----Ea~~er~sr~~~ 137 (412)
T PF01306_consen 95 --FGPLL---Q----------------------SNFWLGA---IIGGIYLGLVFN-AGVPL-S-----EAYAERVSRRNG 137 (412)
T ss_dssp --HHHHH---H----------------------TT-HHHH---HHTTTTTTTTTT-THHHH-H-----HHHHHHHHHHHS
T ss_pred --HHHHH---H----------------------HHHHHHH---HHHHHHHHHHHc-ccchH-H-----HHHHHHHHHHhc
Confidence 11110 0 1222111 11111 11 12231 2 3333333333
Q ss_pred -hhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc---ccccc
Q 012495 152 -FYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTR---SKKKK 227 (462)
Q Consensus 152 -~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~---~~~~~ 227 (462)
=||-.=+.+++|..+++.+++.+-+.. | ... ....-.++.+.+... +..+....++. +.++.
T Consensus 138 feYG~~R~wGSig~ai~s~~~G~L~~i~----p-------~~~--fwi~s~~~~il~lll-~~~~~~~~~~~~~~~~~~~ 203 (412)
T PF01306_consen 138 FEYGRARMWGSIGFAIASLLAGILFNIN----P-------NII--FWIASAAAIILLLLL-LLLKPDVPPQAEVADALGA 203 (412)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHH----H-------HHH--HHHHHHHHHHHHHHH-HSS---SSSSS-SSTTSSS
T ss_pred CCcchHHHHhhHHHHHHHHHhheeeeeC----c-------cHH--HHHHHHHHHHHHHHH-HHcCCcCchhhhhhccccc
Confidence 488888999999999988888765321 1 000 001011111111111 11111101111 11112
Q ss_pred cCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHH
Q 012495 228 EKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQF 306 (462)
Q Consensus 228 ~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~ 306 (462)
++++.+..+ ...++|.|-...+.+.++...-..+..|.|+..+-+..++++++=++.+|...+. +++. ...+++.++
T Consensus 204 ~~~~~~~~~-~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~-~v~~E~~~m~~~p~ 281 (412)
T PF01306_consen 204 KKDKVSLKD-VLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSV-QVFLEALMMFFSPW 281 (412)
T ss_dssp ------HHH-HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCCCCcHHH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHH-HHHHHHHHHHHHHH
Confidence 233334444 5568889988888888888878889999999999999999888777777776555 4444 668899999
Q ss_pred HHHHhchhHHHHHHHHHHHH
Q 012495 307 VFDKFGWGVAAKITPTVLLL 326 (462)
Q Consensus 307 li~r~G~~~~~~i~P~~~l~ 326 (462)
+++|+|-|+.+++.-.++.+
T Consensus 282 li~rig~k~~Lllag~i~~i 301 (412)
T PF01306_consen 282 LINRIGAKNLLLLAGVIMAI 301 (412)
T ss_dssp HHHHH-HHHHHHHHHHHHHH
T ss_pred HHHhcChHhHHHHHHHHHHH
Confidence 99999999999988776543
No 75
>PRK09848 glucuronide transporter; Provisional
Probab=99.04 E-value=2.2e-07 Score=97.31 Aligned_cols=333 Identities=13% Similarity=0.067 Sum_probs=157.7
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhccc----CchhHHH-HHHHHHHHHH-HHHHHHHhhcccccCCchHHHHHh
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKL----SKQALFY-TVIVPFIAFF-GAFGFLLYPLSNAIHPQALADKLL 98 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~----~r~~v~~-~~l~~f~~~~-~lf~~~l~p~~~~~~~~~~~~~~~ 98 (462)
|-++.+.+.+.....+ ...+..|+.|+++||. ||||.+. .......... ++|. .|. ...++
T Consensus 40 gl~~~~~g~~~~~~~~-~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~------- 106 (448)
T PRK09848 40 GVGAAAAGTMLLLVRV-FDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFW---VPT--DWSHS------- 106 (448)
T ss_pred CCCHHHHHHHHHHHHH-HHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHh---CcC--CCCcc-------
Confidence 3336678888876654 4467899999999996 7776543 3322222221 1111 110 00000
Q ss_pred hhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhhhhhhhhhhhhHHHHHHHhhhhhHH-Hhhh
Q 012495 99 NILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITT-VDEAKRFYPLFGLGANVALIFSGRTVK-YFSN 176 (462)
Q Consensus 99 ~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~-~~qakR~fgli~ag~~lG~i~gg~~~~-~l~~ 176 (462)
...|-....|+..++..++... -.++..+++++ ++|+.+..+.=..++++|....+.... .+..
T Consensus 107 -------------~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 107 -------------SKVVYAYLTYMGLGLCYSLVNI-PYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHhcc-cHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222333333332223333 26677777765 477888766555555554333222221 1110
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHH
Q 012495 177 LRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVA 256 (462)
Q Consensus 177 ~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~ 256 (462)
. .|... ........ .+.+.+......+..+.. ||..+++ +++.+..+.++.++|+|.+...+...++
T Consensus 173 ~---~g~~~---~~~~~~~~---~~~~v~~~~~~~~~~~~~--~e~~~~~--~~~~~~~~~~~~l~~n~~f~~~~~~~~~ 239 (448)
T PRK09848 173 S---SPEEM---VSVYHFWT---IVLAIAGMVLYFICFKST--RENVVRI--VAQPSLKISLQTLKRNRPLFMLCIGALC 239 (448)
T ss_pred h---CCCch---hhhHHHHH---HHHHHHHHHHHHHHHcCc--EeccCCC--ccCCCHHHHHHHHhCCchHHHHHHHHHH
Confidence 0 11000 00111111 111222212221122222 3322222 2223677889999999998887777777
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHH-HHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 012495 257 YGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIA-TFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLL 335 (462)
Q Consensus 257 ~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~-~l~q~~l~~~li~r~G~~~~~~i~P~~~l~~~~~ff~l~ 335 (462)
+.............+.++.++++++. +.+....+.+ .++...+.+++.+|+|-+....+.-++ ..++...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~---~~i~~~~~~ 312 (448)
T PRK09848 240 VLISTFAVSASSLFYVRYVLNDTGLF----TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALL---GTCGYLLFF 312 (448)
T ss_pred HHHHHHHHhhhheeeEeeecCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH---HHHHHHHHH
Confidence 76666555544444555555554432 2222333333 344667788999999999888766553 333333333
Q ss_pred HhcCCCCchhhcccchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccC-Cchh-----hhccc-eeeeeecccchhh
Q 012495 336 LFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPL-DEDT-----KVKGK-AAIDVVCNPLGKS 408 (462)
Q Consensus 336 ~~~~~~~~~~~~~~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l-~~~~-----r~k~K-~~iD~l~~r~Gk~ 408 (462)
+..+ .+ .+. .++.. ..-....++..|.-..+.... |+++ |..+. ...-++++++|.+
T Consensus 313 ~~~~--~~---------~~~-~~~~~----~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~a 376 (448)
T PRK09848 313 WVSV--WS---------LPV-ALVAL----AIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQA 376 (448)
T ss_pred HcCc--hh---------HHH-HHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHH
Confidence 2211 00 010 00000 011123333344444333333 3322 12222 2467888999999
Q ss_pred HHHHHHHHHHHH
Q 012495 409 GGALIQQFMILT 420 (462)
Q Consensus 409 ~gs~i~~~l~~~ 420 (462)
+|..+...++..
T Consensus 377 ig~~i~g~~l~~ 388 (448)
T PRK09848 377 IGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHHHHH
Confidence 988887665543
No 76
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.02 E-value=9.1e-07 Score=93.94 Aligned_cols=109 Identities=14% Similarity=0.051 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHH
Q 012495 43 AIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYV 122 (462)
Q Consensus 43 ~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv 122 (462)
..+..+..|+++||+|||+++..++..+++.-++.++. |+.... -+...+...++++
T Consensus 70 ~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~---------~~~~~~--------------g~~a~~~l~~~R~ 126 (490)
T PRK10642 70 RPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI---------PSYATI--------------GIWAPILLLLCKM 126 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc---------ccHHHH--------------HHHHHHHHHHHHH
Confidence 34678999999999999999999999888877777652 221000 0001123567778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 123 MAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 123 ~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+.++-.....+ ..-.+++|.++++++.+..++...+.++|.++|+.+...+.
T Consensus 127 l~G~g~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~ 178 (490)
T PRK10642 127 AQGFSVGGEYT-GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIS 178 (490)
T ss_pred HHHhHhHhhHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877666667 48899999999999999999999999999999887765544
No 77
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.99 E-value=3e-07 Score=97.37 Aligned_cols=139 Identities=9% Similarity=-0.054 Sum_probs=97.7
Q ss_pred hhHHHHHHhhhccceeeecc--cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcc-cCchhHHHHHHHHHHHHHHHHHHH
Q 012495 4 CILFNYTILRDTKDVLVVTA--KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADK-LSKQALFYTVIVPFIAFFGAFGFL 80 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~--~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r-~~r~~v~~~~l~~f~~~~~lf~~~ 80 (462)
+--++|+.+.|.-..+..++ .|-++.+...+...... ...+..+..|+++|| +||||.+........+.++++++.
T Consensus 21 ~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~-~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~ 99 (475)
T TIGR00924 21 WERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSA-LVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-HHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 34577888888777776553 45446778888876654 556888999999999 899999998888777776655531
Q ss_pred HhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhh---hhhhhhhhh
Q 012495 81 LYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDE---AKRFYPLFG 157 (462)
Q Consensus 81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~q---akR~fgli~ 157 (462)
+ +.|...+.....++-.....+ ...++++|.++.+| +.+.+++.+
T Consensus 100 ---------~----------------------~~~~~~~~~~l~g~g~g~~~~-~~~~~~a~~~~~~~~~~r~~~~~~~~ 147 (475)
T TIGR00924 100 ---------I----------------------YPDLIFYGLGTIAVGSGLFKA-NPSSMVGKLYERGDMPRRDGGFTLFY 147 (475)
T ss_pred ---------c----------------------cHhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCCcccccceehhHH
Confidence 1 122222223333333323334 46789999998776 566999999
Q ss_pred hHHHHHHHhhhhhHHHhh
Q 012495 158 LGANVALIFSGRTVKYFS 175 (462)
Q Consensus 158 ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|+|..+|+.+.+.+.
T Consensus 148 ~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 148 MSINIGSFISPLLAGVIA 165 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998887764
No 78
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.96 E-value=1e-06 Score=91.42 Aligned_cols=119 Identities=12% Similarity=0.001 Sum_probs=94.4
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
+|-+.++++++.+...+ ...+..+..|+++||+|||+++......+.+...+.++.
T Consensus 38 ~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----------------------- 93 (412)
T TIGR02332 38 LGLSATMFGLAATLFYA-AYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA----------------------- 93 (412)
T ss_pred cCCCHHHHHHHHHHHHH-HHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 55446788988887664 445788999999999999999988887777766665542
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|...+.+.+.++......+ ...++++|.++++|+.|..+....+.++|.++|+.+...+.
T Consensus 94 --------~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 94 --------TGPESLYLLRILVGIAEAGFLP-GILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred --------cCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345666777788887766666 47889999999999999999999999999999988877654
No 79
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.96 E-value=2.9e-06 Score=94.08 Aligned_cols=118 Identities=10% Similarity=0.008 Sum_probs=91.0
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
+|-++++.+++.+... ...++..+++|+++||+|||+++.+....+++..++.++.
T Consensus 197 ~gls~~~~g~l~s~~~-lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa----------------------- 252 (742)
T TIGR01299 197 LCIPDSGKGMLGLIVY-LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV----------------------- 252 (742)
T ss_pred hCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 4434567888887665 4557899999999999999999888776665544444331
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
-+.|...+++.+.++......+ ...++++|.++.+++.+.++.+.++..+|.++++.+...+
T Consensus 253 --------~s~~~llv~R~l~G~g~g~~~p-~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 253 --------QGYGFFLFCRLLSGFGIGGAIP-IVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1346666677778877666677 6999999999999999999999999999999988766544
No 80
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.95 E-value=4.2e-06 Score=88.54 Aligned_cols=341 Identities=11% Similarity=0.053 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhh
Q 012495 31 IPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLA 110 (462)
Q Consensus 31 l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~ 110 (462)
..+...... ..+.+..|..|.++|+-++||-+..... ....+....++ ..+|+
T Consensus 72 ~~~~~sis~-l~~all~P~lGa~aD~~~~Rk~~l~~~~---~~~~~~~~~l~----~v~~~------------------- 124 (477)
T PF11700_consen 72 WLYANSISG-LLQALLAPFLGAIADYGGRRKRFLLIFT---LLGVLATALLW----FVSPG------------------- 124 (477)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHcccccchHHHHHHH---HHHHHHHHHHH----HhCcc-------------------
Confidence 345556544 4667899999999999999887654322 21111221111 01232
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhh--------------------------hhhhhhhhhHHHHHH
Q 012495 111 IMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEA--------------------------KRFYPLFGLGANVAL 164 (462)
Q Consensus 111 ~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qa--------------------------kR~fgli~ag~~lG~ 164 (462)
+.|...++|+++.+.-..... ..-++.-|+.++++. .|.=+.=-+.+.+|.
T Consensus 125 --~~~~~~~l~iia~v~~~~~~v-fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~ 201 (477)
T PF11700_consen 125 --QWWLALVLFIIANVGYEASNV-FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGG 201 (477)
T ss_pred --hHHHHHHHHHHHHHHHHHHHH-HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHH
Confidence 457788889998887666666 478899999999988 454444444444555
Q ss_pred HhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc-ccccC-CC------CChHH
Q 012495 165 IFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSK-KKKEK-PK------MGTME 236 (462)
Q Consensus 165 i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~-~~~~k-~~------~~~~~ 236 (462)
++.=.+...+....+ ++..+.+. ....+ ..+|.-.+..-.-.-.+. |+.++ ++.++ ++ ....+
T Consensus 202 ~v~l~i~l~~~~~~~--~~~~~~~~----~r~~~-~~~a~ww~vfsiP~~~~~--~~~~~~~~~~~~~~~~~~g~~~l~~ 272 (477)
T PF11700_consen 202 LVALLISLLLVISPG--STASNTWA----IRVAF-LIVALWWLVFSIPLFLWL--PDRPGPRPLPSGSSYLRFGFKRLWR 272 (477)
T ss_pred HHHHHHHHHHHHcCC--Cccccchh----hhHHH-HHHHHHHHHHHHHHHHhC--CCCCCCCCCCcchhHHHHHHHHHHH
Confidence 543322222211100 01001111 11211 222211111100011111 22211 11111 11 13567
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchh--
Q 012495 237 SLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWG-- 314 (462)
Q Consensus 237 ~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~-- 314 (462)
.+|.+.|.|.+...++.-++|+-..+-+-..-..+.++.++-++.. +..+...++++++.-.++.+++-||+|.+
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~---l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~ 349 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ---LIVFGLVVQIVAIIGALLFGWLQDRFGPKTK 349 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 7888889998777777777777777777777777888777755422 23345566666665677888999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcCCCCchhhcccchhH-HHHHHHHHHHHHHHHhhhhhccccchhhccccCCchhh-
Q 012495 315 VAAKITPTVL-LLTGVGFFSLLLFGDPLGPALAKFGMTPL-LAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTK- 391 (462)
Q Consensus 315 ~~~~i~P~~~-l~~~~~ff~l~~~~~~~~~~~~~~~~~p~-~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r- 391 (462)
.++.+.-... +++..+++++.......... ... ...+++|.. -+.-+ +.-..+|..+-|++|
T Consensus 350 ~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~------~~f~~~a~~~G~~-----~G~~q----s~sRs~~~~LiP~g~e 414 (477)
T PF11700_consen 350 RTLLISLILWIIIPLYGLFGFWPSFFGLKSP------WEFWVLAVLIGLF-----MGGIQ----SASRSLFSRLIPPGRE 414 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcccH------HHHHHHHHHHHHH-----hhhHH----HHHHHHHHHhCCCchh
Confidence 6666555543 33444444332211000000 001 123344431 11122 223334455554444
Q ss_pred hccceeeeeecccchhhHHHHHHHHHHHHhhhhhhhhh
Q 012495 392 VKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTP 429 (462)
Q Consensus 392 ~k~K~~iD~l~~r~Gk~~gs~i~~~l~~~~~~~~~~~~ 429 (462)
.+.=+.++ +.+|..--+|-++...+.-..++.|....
T Consensus 415 ~efFgly~-i~gk~ss~lGPll~g~i~~~tg~~r~g~~ 451 (477)
T PF11700_consen 415 AEFFGLYA-ITGKASSWLGPLLFGLITDATGSQRYGFL 451 (477)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 44555554 44455555666666666666666665443
No 81
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.95 E-value=1.8e-07 Score=98.29 Aligned_cols=240 Identities=9% Similarity=-0.003 Sum_probs=141.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcc
Q 012495 27 SAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFL 106 (462)
Q Consensus 27 ~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~ 106 (462)
++++.+.+...+. .+..+..+..|+++||+|||+++.......++..+++.+...
T Consensus 74 s~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------------------------ 128 (465)
T TIGR00894 74 SGALQGLILSSHF-YGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG------------------------ 128 (465)
T ss_pred CHHHhhHHHHHHH-HHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH------------------------
Confidence 3566788887665 455788999999999999999988877665555443332110
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCc
Q 012495 107 GPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVD 186 (462)
Q Consensus 107 ~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~ 186 (462)
...|...+.++..++......+ ....+++|.++++|+.|..++...+.++|.++|+.+...+.+.. .
T Consensus 129 -----~~~~~l~~~r~~~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-------~ 195 (465)
T TIGR00894 129 -----GGIALVVFCRVIQGLAQGSVSP-ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-------G 195 (465)
T ss_pred -----cCchHHHHHHHHHHHhcccchh-hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------C
Confidence 0234455566777776656666 58899999999999999999999999999999998888765321 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc-----c--------cccCCCCChHHHHHHHhhcHHHHHHHHH
Q 012495 187 GWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSK-----K--------KKEKPKMGTMESLKFLVSSRYIRDLATL 253 (462)
Q Consensus 187 ~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~-----~--------~~~k~~~~~~~~l~~i~~s~yl~~l~~~ 253 (462)
+|...... ..+.+.+....++...+. .|++++ + ++++++.+....++.++++|.+..++..
T Consensus 196 gw~~~f~i----~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (465)
T TIGR00894 196 GWPMIFYV----FGIVGCAWSLLWFVFPAD--DPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFA 269 (465)
T ss_pred CCCeehhh----hhHHHHHHHHHHHHHhcC--CcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHH
Confidence 22211110 011122111122112111 121100 0 0001011112246778889988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhch
Q 012495 254 VVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGW 313 (462)
Q Consensus 254 v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~ 313 (462)
.+.+....+.+..-...+.++.++.+.+.+++. .....+..++...+.+++.+|++.
T Consensus 270 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~---~~~~~~~~~i~~~~~g~l~d~~~~ 326 (465)
T TIGR00894 270 IFGHFWLYTILPTYLPTFISWVLRVSGKENGLL---SSLPYLFAWLCSIFAGYLADFLKS 326 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666555555667777666555444443 333333343334556666666543
No 82
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.95 E-value=1.9e-06 Score=90.06 Aligned_cols=120 Identities=10% Similarity=0.051 Sum_probs=84.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
|-++++.+++.....+ +..+..+..|+++||+|||+++......+.+..++.+.. |. . .
T Consensus 57 g~s~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~---~-~-------------- 115 (438)
T TIGR00712 57 GFSKGELGFALSAISI-AYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFV--PW---A-T-------------- 115 (438)
T ss_pred CCCHhHhHHHHHHHHH-HHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcc--cc---c-c--------------
Confidence 3447889999887664 446889999999999999998877766666655444321 00 0 0
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
.+.|...+.+.+.++......+ .....+.|.++++|+.+..++.+.+.++|..+++.+...
T Consensus 116 -------~~~~~l~~~~~l~g~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 116 -------SSIAIMFVLLFLNGWFQGMGWP-PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred -------chHHHHHHHHHHHHHHhhcchH-HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence 1234444555555555444444 356788899999999999999999999999988876653
No 83
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.91 E-value=1.2e-06 Score=91.33 Aligned_cols=322 Identities=14% Similarity=0.135 Sum_probs=183.9
Q ss_pred HHHHHHHHHhcc----cCchhHH-HHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHH
Q 012495 45 GFMLLYTKLADK----LSKQALF-YTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCL 119 (462)
Q Consensus 45 ~~~~~~~~L~~r----~~r~~v~-~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~ 119 (462)
+.-|+.|.++|| +||+|-+ .....++++... +.+ ..|+ +.+ +.+ ..|-+..
T Consensus 63 i~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~----l~F-----~~p~-~~~--------~~k------~~ya~vt 118 (467)
T COG2211 63 ITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV----LLF-----ITPD-FSM--------TGK------LIYALVT 118 (467)
T ss_pred HhcchheeeecccccccccccHHHHHHhHHHHHHHH----HHH-----cCCC-ccc--------Ccc------hHHHHHH
Confidence 567899999987 7775544 333355544332 221 1222 000 111 2233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-hhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHH
Q 012495 120 FYVMAELWGSVVISVLFWGFANQITT-VDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSI 198 (462)
Q Consensus 120 fyv~~el~~~~~~s~lfwa~~ndi~~-~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~ 198 (462)
+.++.-.++.++++ .|+..+++|+ ++||.|..+.=..++++|..+.......+.+. +|+....+. +.....+
T Consensus 119 Y~l~~l~YT~vniP--y~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~---~g~~~~~~g--~~~~~~~ 191 (467)
T COG2211 119 YMLLGLGYTLVNIP--YGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL---FGGGDKALG--YQGTALV 191 (467)
T ss_pred HHHHHHHHHheeCc--hhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCcchhh--HHHHHHH
Confidence 44444445555555 8999999997 89999999999999999988777776665543 333321111 1122222
Q ss_pred HHHHH-HHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 012495 199 VVLMG-LSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFP 277 (462)
Q Consensus 199 ~~~~g-~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~ 277 (462)
..+.+ +..+.++.-.++.. ++.+ +.++..|.++.+.+..++++|-++.+++..++.....|+.......+++...+
T Consensus 192 ~~vi~~i~~l~~~~~v~ER~--~~~~-~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg 268 (467)
T COG2211 192 LGVIGVILLLFCFFNVKERV--VETQ-PTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLG 268 (467)
T ss_pred HHHHHHHHHHHHHHHhhccc--Cccc-cCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcC
Confidence 12222 12222332222222 1111 11112345677888899999999999998888888888888887777776555
Q ss_pred ChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHH
Q 012495 278 SPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAA 356 (462)
Q Consensus 278 ~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G~~~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~~ 356 (462)
+++ ..... ...+.... +....+.+++.||+|=+....+.-++..++.++++ +.. .+. ..+.
T Consensus 269 ~~~-l~~~~---~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~---f~~--~~~---------~~l~ 330 (467)
T COG2211 269 DPE-LFAYL---LLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY---FTP--AGS---------VVLI 330 (467)
T ss_pred ChH-HHHHH---HHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH---hhc--Ccc---------hHHH
Confidence 555 33322 22222233 33467899999999999999988665444333332 221 000 1111
Q ss_pred HHHHHHHHHHHHhhhhhccccchhhccccCCchhhhc-cc------eeeeeecccchhhHHHHHHHHHHHHhhh
Q 012495 357 VYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVK-GK------AAIDVVCNPLGKSGGALIQQFMILTFGS 423 (462)
Q Consensus 357 v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k-~K------~~iD~l~~r~Gk~~gs~i~~~l~~~~~~ 423 (462)
++. .......++..+|--=.+..=+.+.++.| +| ..+-+++.|+|-++|+.+-...+..++-
T Consensus 331 ~~~-----~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 331 VVA-----LIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHH-----HHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 111 11233355666665555555555444444 22 3456678899999999888877777754
No 84
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.89 E-value=4.8e-07 Score=95.19 Aligned_cols=118 Identities=8% Similarity=-0.094 Sum_probs=79.8
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
+|.+.++..++...... ...+..|+.|+++||+|||+++......+....++.++.
T Consensus 49 ~g~s~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------------------- 104 (455)
T TIGR00892 49 FQATYSETAWISSIMLA-VLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS----------------------- 104 (455)
T ss_pred hCcchhHHHHHHHHHHH-HHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----------------------
Confidence 45446778888776554 335788999999999999999888776666655544432
Q ss_pred CcchhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 104 RFLGPLAIMRIWSFCL-FYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~-fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|.... .+++.++-...... ...+.++|.++ +++.|..++...+.++|..+++.+...+.
T Consensus 105 --------~~~~~l~~~~~~l~G~~~~~~~~-~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~ 167 (455)
T TIGR00892 105 --------SNVIELYLTAGFITGLGLAFNFQ-PSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF 167 (455)
T ss_pred --------hhHHHHHHHHHHHHHhcchhhhh-HHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 02333322 22444433222223 24577888885 88899999999999999998887776554
No 85
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.87 E-value=4.1e-06 Score=89.35 Aligned_cols=142 Identities=12% Similarity=0.097 Sum_probs=91.9
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcc-cCchhHHHHHHHHHHHHHHHHHHHH
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADK-LSKQALFYTVIVPFIAFFGAFGFLL 81 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r-~~r~~v~~~~l~~f~~~~~lf~~~l 81 (462)
++.-++|+.+++.-.....+..|-+.++..++...+...+ ....++.|+++|| +|||+.+......+.+.+.++++.
T Consensus 31 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~-~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~- 108 (500)
T PRK09584 31 LWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALV-YGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS- 108 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-
Confidence 4556777888887666665556643444556555443333 3456789999999 599999988887777666555431
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhh--hhhhhhhhH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAK--RFYPLFGLG 159 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qak--R~fgli~ag 159 (462)
++ ..|...+.++..++-+....+ ..-++++|.+++++++ +.++..+.+
T Consensus 109 --------~~---------------------~~~~l~~~~~l~gig~g~~~~-~~~~l~~~~f~~~~~~~~~~~~~~~~~ 158 (500)
T PRK09584 109 --------GH---------------------DAGIVYMGMATIAVGNGLFKA-NPSSLLSTCYEKDDPRLDGAFTMYYMS 158 (500)
T ss_pred --------cc---------------------cHHHHHHHHHHHHHhhhcccC-CHHHHHHHhcCCCchhhhhcchHHHHH
Confidence 00 112222233334443333344 3567899999876544 589999999
Q ss_pred HHHHHHhhhhhHHHhhh
Q 012495 160 ANVALIFSGRTVKYFSN 176 (462)
Q Consensus 160 ~~lG~i~gg~~~~~l~~ 176 (462)
.++|..+|+.+.+++.+
T Consensus 159 ~~iG~~~gp~i~g~l~~ 175 (500)
T PRK09584 159 INIGSFFSMLATPWLAA 175 (500)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888887653
No 86
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.87 E-value=9.2e-06 Score=85.38 Aligned_cols=129 Identities=6% Similarity=-0.012 Sum_probs=92.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
|.++++.+++.+...+ ..++..++.|+++||+||||++......+.+..++.++..+......+++
T Consensus 51 ~~~~~~~~~~~s~~~i-g~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~------------- 116 (479)
T PRK10077 51 SAANSLLGFCVASALI-GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDN------------- 116 (479)
T ss_pred cCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccc-------------
Confidence 3335677888876654 55789999999999999999999888877766555543211000000111
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
. ...|...+.+++.++......+ ...++++|.++++|+.+..+..+.+..+|.++++.....+
T Consensus 117 ~------~~~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 117 T------GYVPEFVIYRIIGGIGVGLASM-LSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred h------hHHHHHHHHHHHHhhhHhHHhh-HHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1234556677888888777777 5999999999999999999999999999998876555443
No 87
>PRK11462 putative transporter; Provisional
Probab=98.86 E-value=6.6e-06 Score=86.79 Aligned_cols=248 Identities=14% Similarity=0.083 Sum_probs=134.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcc----cCchhHHHHH-HHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhC
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADK----LSKQALFYTV-IVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILG 102 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r----~~r~~v~~~~-l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~ 102 (462)
+...+.+....-+ -=.+.-|+.|.++|| +||||-+... -..+++.+.+ ++ ..|+ + +
T Consensus 44 ~~~~g~i~~~~ri-~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l----lf-----~~p~-~--------s 104 (460)
T PRK11462 44 AGFVGTMFLVARA-LDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL----AY-----STPD-L--------S 104 (460)
T ss_pred HHHHHHHHHHHHH-HHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH----HH-----hCCC-C--------C
Confidence 4445555553332 223678999999997 6887665533 3444443321 11 0121 0 0
Q ss_pred CCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCC-hhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhcc
Q 012495 103 PRFLGPLAIMRIWSFCLFYVMAE-LWGSVVISVLFWGFANQITT-VDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKN 180 (462)
Q Consensus 103 ~~~~~~i~~~~~w~~~~fyv~~e-l~~~~~~s~lfwa~~ndi~~-~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~ 180 (462)
...+ -.| +.+.|+.-. .+....++ +++...+.++ ++||.|..+.-..++++|..+++.+...+.+.
T Consensus 105 ~~~~------~~y-~~~~~~~~~~~~t~~~ip--y~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~--- 172 (460)
T PRK11462 105 MNGK------MIY-AAITYTLLTLLYTVVNIP--YCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL--- 172 (460)
T ss_pred cchH------HHH-HHHHHHHHHHHHHHHhcc--HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 0000 122 233343333 34434445 8999999998 99999999999999999988877665443321
Q ss_pred CCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHHH
Q 012495 181 LGPGV--DGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYG 258 (462)
Q Consensus 181 ~gp~~--~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~ 258 (462)
.|... .+|. .....+.+.+.++.... -... +|.. ++++++.+..+.++.++++|..+.++...+++.
T Consensus 173 ~g~~~~~~g~~----~~~~i~~ii~~i~~~i~---~~~~--kE~~--~~~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~ 241 (460)
T PRK11462 173 IGGDNKPLGFQ----GGIAVLSVVAFMMLAFC---FFTT--KERV--EAPPTTTSMREDLRDIWQNDQWRIVGLLTIFNI 241 (460)
T ss_pred hCCCchhhhHH----HHHHHHHHHHHHHHHHH---Hhcc--eecc--CCCccCCCHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 22110 1111 11111111111211111 1111 2211 112234467899999999999888877777777
Q ss_pred HHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHH
Q 012495 259 ISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITP 321 (462)
Q Consensus 259 ~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P 321 (462)
+..+........+.+....+++... .+....++.+++-..+.+++.+|+|-+......-
T Consensus 242 ~~~~~~~~~~~y~~~y~~g~~~~~~----~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~ 300 (460)
T PRK11462 242 LAVCVRGGAMMYYVTWILGTPEVFV----AFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN 300 (460)
T ss_pred HHHHHHHhHhhhhhhhhcCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 7666665555555555444444222 2233334444444567889999999887755333
No 88
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.85 E-value=1.6e-06 Score=89.86 Aligned_cols=114 Identities=9% Similarity=0.048 Sum_probs=87.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
..+.+++.....+ ...+..|..|+++||+|||+++......++....+.++.- ..
T Consensus 70 ~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--------~~---------------- 124 (481)
T TIGR00879 70 SSLWGLVVSIFLV-GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA--------FA---------------- 124 (481)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--------cc----------------
Confidence 4678888887664 5568999999999999999998887777666555444321 00
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhH
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTV 171 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~ 171 (462)
.+.|...+.+...++-.....+ ...++++|.++++|+.+..++...+.++|..+|+.+.
T Consensus 125 ----~~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 125 ----LSVEMLIVGRVLLGIGVGIASA-LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred ----cchHHHHHHHHHHHhhhhHHHh-HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1235556666777776555556 5899999999999999999999999999999998877
No 89
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.83 E-value=7.4e-06 Score=86.01 Aligned_cols=258 Identities=14% Similarity=0.025 Sum_probs=146.7
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
+|-+++++.++.+...+... +.-..+|++.||+|.|+++.++....++..++.++... ++.
T Consensus 65 ~~ls~~q~g~l~ai~~l~~a-l~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~------~~~------------ 125 (462)
T PRK15034 65 FNFTTDQLFLLTALPSVSGA-LLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQ------NPN------------ 125 (462)
T ss_pred cCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc------ccC------------
Confidence 44346788988887776665 45455699999999999998888877766665554320 000
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhh--hhccC
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSN--LRKNL 181 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~--~~~~~ 181 (462)
.+.|.+.+.+...++-+ ...+ .-...+++.+++||+.|..|+...++++|..++..++..+.. ..+..
T Consensus 126 --------~s~~~lli~r~l~Gigg-~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~ 195 (462)
T PRK15034 126 --------TPFGIFIVIALLCGFAG-ANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFL 195 (462)
T ss_pred --------CCHHHHHHHHHHHHHHH-HhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 14567777778888854 5666 488899999999999999999988888888777665543221 00111
Q ss_pred CC----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHH
Q 012495 182 GP----GVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAY 257 (462)
Q Consensus 182 gp----~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~ 257 (462)
|. ...+-....+..........++....+++..+. ++ + + +.+. +..+.++|+|....++.+.+..
T Consensus 196 G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~---~~---~--~--~~~~-~~~~~vlk~~~~Wllslly~~t 264 (462)
T PRK15034 196 GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND---IA---S--S--RASI-ADQLPVLQRLHLWLLSLLYLAT 264 (462)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC---cc---c--c--ccCH-HHHHHHhCCCchhHHHHHHHHH
Confidence 11 000000001110000011111111112111111 11 0 1 1122 3445588899877777766554
Q ss_pred HHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHH-HHHHHHHhhHHHHHHhchhHHHHHHHHHHHHH
Q 012495 258 GISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGI-ATFTMMLLSQFVFDKFGWGVAAKITPTVLLLT 327 (462)
Q Consensus 258 ~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi-~~l~q~~l~~~li~r~G~~~~~~i~P~~~l~~ 327 (462)
--...-+.+.+..+.++.+++.+... ....+. ...+.-.+.+++-+|+|-++...+.=+.+.+.
T Consensus 265 FG~fvg~s~~lp~~~~~~~~~~~~l~------~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 265 FGSFIGFSAGFAMLAKTQFPDVNILR------LAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIF 329 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHH------HHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHH
Confidence 44454456566666777775322111 111122 22223456789999999998887766654443
No 90
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.79 E-value=3.9e-07 Score=99.83 Aligned_cols=298 Identities=10% Similarity=0.053 Sum_probs=167.9
Q ss_pred HHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH---hhccc
Q 012495 10 TILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL---YPLSN 86 (462)
Q Consensus 10 ~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l---~p~~~ 86 (462)
+...++.+++ ..+++-+..+.+++...+.+ ...+..+..+.+.||.+|+|.+.+....+++.-+++++-= -|++.
T Consensus 50 g~~~~~l~~i-ek~F~lss~~~G~i~s~~~i-~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~ 127 (633)
T TIGR00805 50 GLVNSSLTTI-ERRFKLSTSSSGLINGSYEI-GNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY 127 (633)
T ss_pred HHHHhhchhh-hhhhCCCCCcceeeeehhhH-HHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence 3444444443 33466556778888876664 5568899999999999999999988888877777666421 11100
Q ss_pred ccC----------CchHHHHH------------hhhhCC--CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012495 87 AIH----------PQALADKL------------LNILGP--RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQ 142 (462)
Q Consensus 87 ~~~----------~~~~~~~~------------~~~~~~--~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~nd 142 (462)
..+ ....++.. .-.... .. ..+...+.+++.++-.....+ +-.++++|
T Consensus 128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~GiG~~~~~~-~~~~~i~d 199 (633)
T TIGR00805 128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESL-------MWLLFLVSQLLRGIGATPIFP-LGISYIDD 199 (633)
T ss_pred cccccccccccccccccccCCCCCCccccccccccccccCCCc-------eehhhHHHHHHHhccCCcchh-cCchhhhc
Confidence 000 00000000 000000 00 112333456777777666666 58999999
Q ss_pred hCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhcc----------CCCCCchhHHHHHHHHHHHHHHH---HHHHHH
Q 012495 143 ITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKN----------LGPGVDGWAVSLKGMMSIVVLMG---LSICGL 209 (462)
Q Consensus 143 i~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~----------~gp~~~~~~~~~~~l~~~~~~~g---~l~l~~ 209 (462)
.++++++.+.++++.++..+|..+|..+.+.+.+.... +.|....|..... ..+ ++.+ .+....
T Consensus 200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw--l~F-li~g~l~~l~~v~ 276 (633)
T TIGR00805 200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW--IGF-LICGGVALLTSIP 276 (633)
T ss_pred cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH--HHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999998888777643211 1222222322111 111 1111 111111
Q ss_pred HHHHhhhcCCCcc-cc----c-c---c--cCC-------CCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012495 210 YWWVNNNVELPTR-SK----K-K---K--EKP-------KMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSK 271 (462)
Q Consensus 210 ~~~~~~~~~~p~~-~~----~-~---~--~k~-------~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~ 271 (462)
+....+..+.++. .+ + + + ++. ..+..+.++.++++|......+...+.......+..-...+
T Consensus 277 l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~y 356 (633)
T TIGR00805 277 FFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKY 356 (633)
T ss_pred HHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222211100 00 0 0 0 000 01234567789999988777777777766666666666777
Q ss_pred HHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhch--hHHHHHHHHH
Q 012495 272 LKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFGW--GVAAKITPTV 323 (462)
Q Consensus 272 ~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G~--~~~~~i~P~~ 323 (462)
.+++++.+++..++ +....++.. ++..++.+++.+|++. +..+...-++
T Consensus 357 l~~~~g~s~~~ag~---l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~ 408 (633)
T TIGR00805 357 LENQYGISSAEANF---LIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICL 408 (633)
T ss_pred HHHHcCCcHHHHHH---HhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHH
Confidence 77777766644433 344444433 4467888999999984 4554444443
No 91
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.77 E-value=5.8e-06 Score=87.94 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=93.8
Q ss_pred HHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcc-cCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 012495 6 LFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADK-LSKQALFYTVIVPFIAFFGAFGFLLYPL 84 (462)
Q Consensus 6 ~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r-~~r~~v~~~~l~~f~~~~~lf~~~l~p~ 84 (462)
-++|+..++.-.....+..|-+.++..+....+.... ....+.-|+++|| +||||++......+.+..++.++..
T Consensus 27 r~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~-~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~--- 102 (489)
T PRK10207 27 RFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALV-YGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL--- 102 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc---
Confidence 4677777776665555555544555677776555444 4677899999999 9999999999988888766555421
Q ss_pred ccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhh--hhhhhhhhhHHHH
Q 012495 85 SNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEA--KRFYPLFGLGANV 162 (462)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qa--kR~fgli~ag~~l 162 (462)
+ ......+..+..++-.....+ .--+++.|.+++|++ .+.|+..+.+.|+
T Consensus 103 ------~---------------------~~~ll~~~~~l~~ig~g~~~~-~~~~li~~~~p~~~~~~~~~~~~~~~~~ni 154 (489)
T PRK10207 103 ------L---------------------KPDLIFIALGTIAVGNGLFKA-NPASLLSKCYPPKDPRLDGAFTLFYMSINI 154 (489)
T ss_pred ------c---------------------chhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCchhhhcchhHHHHHHHH
Confidence 0 000111122333333333334 245799999988864 4589999999999
Q ss_pred HHHhhhhhHHHhhh
Q 012495 163 ALIFSGRTVKYFSN 176 (462)
Q Consensus 163 G~i~gg~~~~~l~~ 176 (462)
|..+|+.+..++.+
T Consensus 155 g~~~g~~l~g~l~~ 168 (489)
T PRK10207 155 GSLISLSLAPVIAD 168 (489)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887764
No 92
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.76 E-value=2.7e-07 Score=96.87 Aligned_cols=301 Identities=15% Similarity=0.121 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY 121 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy 121 (462)
..++.+|.+|.++||+|||..+.+...+....-....+ .++|... ..
T Consensus 74 ~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~--------------------------------~~~~~~~-~~ 120 (463)
T KOG2816|consen 74 LTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF--------------------------------QGYWFFL-LL 120 (463)
T ss_pred HHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH--------------------------------HHHHHhh-hc
Confidence 44789999999999999999998887655443221111 1223322 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHH
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVL 201 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~ 201 (462)
=..+.++ ...+ .-.++++|+++.|+|...+|++.+....+..+|+.+..+..+. .| ....+.+
T Consensus 121 ~l~g~~~-~~~s-~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~---~~------------~a~~f~i 183 (463)
T KOG2816|consen 121 GLSGGFS-AIFS-VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF---LG------------IALVFLI 183 (463)
T ss_pred ccccchh-hhhh-hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---cC------------chHHHHH
Confidence 2233343 4556 4889999999999999999999997777777777666654432 11 1112233
Q ss_pred HHHHHHHHHHHHhhhcCCCccccccccC----------C--C---CChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 012495 202 MGLSICGLYWWVNNNVELPTRSKKKKEK----------P--K---MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEV 266 (462)
Q Consensus 202 ~g~l~l~~~~~~~~~~~~p~~~~~~~~k----------~--~---~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~ 266 (462)
+....+....+.. ...||+..+++++ + + .+..++.+...++|..+.++...+.. .+.|.
T Consensus 184 a~~~~~~~~~y~~--~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~----~~~~~ 257 (463)
T KOG2816|consen 184 AAASGILSLLYML--LFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLS----SLPEA 257 (463)
T ss_pred HHHHHHHHHHHHh--hccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHH----HHHHh
Confidence 3222222221111 1223322111111 1 0 12344444444556555555444432 22222
Q ss_pred -----HHHHHHHhhCCChhhhhhHHhhHHHHHHHHHH-HHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012495 267 -----TWKSKLKAQFPSPNEYSSFMGDFSTATGIATF-TMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDP 340 (462)
Q Consensus 267 -----~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l-~q~~l~~~li~r~G~~~~~~i~P~~~l~~~~~ff~l~~~~~~ 340 (462)
..-.+.+.++.++++.- +.+.++.+.... .|.+..+.+.+.+|++..+.+.-+. -.+..+...+..++
T Consensus 258 ~~~~~~~~~yl~~~f~w~~~~~---s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~---~~~~~~~~af~~~~ 331 (463)
T KOG2816|consen 258 GGASDVLLLYLKAKFGWNKKEF---SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLS---EFLQLLLFAFATET 331 (463)
T ss_pred cCceeEEEEEEeeecCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH---HHHHHHHHHHhccc
Confidence 11234455566555222 334556666664 3788899999999999965554443 22333333433322
Q ss_pred CCchhhcccchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccCCchhhhccceeeeeecccchhhHHHHHHHHHHHH
Q 012495 341 LGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILT 420 (462)
Q Consensus 341 ~~~~~~~~~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k~K~~iD~l~~r~Gk~~gs~i~~~l~~~ 420 (462)
+.+ +....++++ .-...-..+-....-.++|++.|....+- ..+-+....++.+++.+...
T Consensus 332 w~~----------~~~~v~~~~--------~~~~~pa~~s~~s~~v~~~e~g~v~~~is-~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 332 WMM----------FAAGVVVAL--------AGIVFPAIRAFASILVSPEEQGKVFGIIS-GIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred hhh----------hHHHHHHHh--------hcchhHHHHhHHHhhcccccccchhhHHH-HHHHHhhhhhHHHHHHHHHH
Confidence 211 111112121 11122222334445566777777666543 33444555666666665555
Q ss_pred hhh
Q 012495 421 FGS 423 (462)
Q Consensus 421 ~~~ 423 (462)
+.+
T Consensus 393 t~~ 395 (463)
T KOG2816|consen 393 TLD 395 (463)
T ss_pred HHH
Confidence 433
No 93
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.73 E-value=1.2e-07 Score=97.19 Aligned_cols=251 Identities=14% Similarity=0.105 Sum_probs=148.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
.+..+.+-.. ....+.++.|+.|.|.||++|+.++.+++..+...-++-++.
T Consensus 67 ~s~~Gll~~v-f~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--------------------------- 118 (493)
T KOG1330|consen 67 DSELGLLQTV-FIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--------------------------- 118 (493)
T ss_pred chhccchhHH-HHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH---------------------------
Confidence 4455666663 456778999999999999999999998888777765555542
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCch
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDG 187 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~ 187 (462)
...|...+++-..++=-+...+ +..++++|.|+.+||.|.+++++.+.++|..+|.......++.. +.
T Consensus 119 ----~~Fwq~~l~R~~vGiGeAs~~~-ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-------~~ 186 (493)
T KOG1330|consen 119 ----NHFWQVLLCRGFVGIGEASYSP-IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-------FW 186 (493)
T ss_pred ----HHHHHHHHHHHHhccchhhhcc-cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-------cc
Confidence 2567777777777776555556 69999999999999999999999999999888876665544321 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc-cccc--c----cCCCCChHHHHHHHhhcHH-HHHHHHHHHHHHH
Q 012495 188 WAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTR-SKKK--K----EKPKMGTMESLKFLVSSRY-IRDLATLVVAYGI 259 (462)
Q Consensus 188 ~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~-~~~~--~----~k~~~~~~~~l~~i~~s~y-l~~l~~~v~~~~~ 259 (462)
|.-.+.+. .+.+..+..+..+. .++||. ++++ + .|+..+.++-+|...+.|- .......+....+
T Consensus 187 Wr~af~~~----avl~vi~~~L~~~f---~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv 259 (493)
T KOG1330|consen 187 WRWAFRGS----AVLGVIVGLLVFLF---VREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFV 259 (493)
T ss_pred eEEEEEee----hHHHHHHHHHHHhh---ccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHh
Confidence 22111110 11122211111111 223442 1111 1 1233456677777777453 2222222222222
Q ss_pred HHH--HHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHH-HHHhhHHHHHHhchhHHHHHHHHHHH
Q 012495 260 SIN--LVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFT-MMLLSQFVFDKFGWGVAAKITPTVLL 325 (462)
Q Consensus 260 ~~~--l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~-q~~l~~~li~r~G~~~~~~i~P~~~l 325 (462)
+.+ .-+-++..+..+-.+.+++.+..+|.+....|++... -..+..++.+.+--.....+-|+...
T Consensus 260 ~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~ 328 (493)
T KOG1330|consen 260 IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAA 328 (493)
T ss_pred ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHh
Confidence 222 1122222222222234556677888787777777744 35566676666655566666666543
No 94
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3.8e-07 Score=91.76 Aligned_cols=231 Identities=11% Similarity=0.007 Sum_probs=151.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
..+++.++...+ .+|+++.|..|.+.||+|+|--+.+.+.....+=.+|++.
T Consensus 105 ~~~iG~LFaskA-~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--------------------------- 156 (464)
T KOG3764|consen 105 NTQIGLLFASKA-LVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--------------------------- 156 (464)
T ss_pred ccchhHHHHHHH-HHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc---------------------------
Confidence 457999999665 6889999999999999999999887777666666666652
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChh-hhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCc
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVD-EAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVD 186 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~-qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~ 186 (462)
.++|...+-++.-++-++.... -=.+.++|.++.| ||.+.+|..-.+.++|.++| |-.|
T Consensus 157 ----~sy~~l~vAR~LQgvgsA~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvg---------------PpfG 216 (464)
T KOG3764|consen 157 ----NSYPMLFVARSLQGVGSAFADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVG---------------PPFG 216 (464)
T ss_pred ----chhHHHHHHHHHhhhhHHHHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceec---------------CCcc
Confidence 1566666667777776655544 4788999999865 46899999998999998855 4455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 012495 187 GWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEV 266 (462)
Q Consensus 187 ~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~ 266 (462)
|.+++..+--.++.+++.+++..-. ++-..-.|.+.+ ++++++. ..++.+++.||+...+..+...+++..+.|=
T Consensus 217 GilYe~~Gk~aPFlVL~~v~Lld~~-L~l~vi~p~~~~-~~~~~~~---~~~~~Ll~dP~I~~~agai~~~n~~lafLeP 291 (464)
T KOG3764|consen 217 GILYEFAGKSAPFLVLAIVLLLDGA-LQLLVIEPTEMD-PDSTEQG---TPMWSLLMDPYILLIAGAITFSNSSLAFLEP 291 (464)
T ss_pred cchHhhcCCcCcHHHHHHHHHHHHH-HHHheeCccccC-ccccccC---ccHHHHHhCchHhhhhcchhhccchHHHhCc
Confidence 5555544433344555554443221 111111232111 1122222 1245577899999999999999999999999
Q ss_pred HHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchh
Q 012495 267 TWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWG 314 (462)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~ 314 (462)
+......|++..++ -.+|..+.--.+...+-.-+.+.+.+|++-.
T Consensus 292 tlslwm~e~m~~p~---w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~ 336 (464)
T KOG3764|consen 292 TLSLWMLETMFTPG---WEVGLAFLPASLSYAIGTNLFGKLADKYPHL 336 (464)
T ss_pred ccHHHHHHhccCCC---cceeeeecccccchhccCchHHHHHHhcCch
Confidence 99999998887554 1222222111222222334567788888833
No 95
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.63 E-value=1.9e-05 Score=83.37 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=88.3
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhc----ccCchhHHHHH-HHHHHHHHHHHHHHH
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLAD----KLSKQALFYTV-IVPFIAFFGAFGFLL 81 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~----r~~r~~v~~~~-l~~f~~~~~lf~~~l 81 (462)
++|++.-+.-..+..+ .|-++...+.+..+.. .+.++..|+.|+++| |+||||.+... ....+..+.++++.
T Consensus 18 ~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~-l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~- 94 (477)
T TIGR01301 18 FGWALQLSLLTPYVQE-LGIPHAWASIIWLCGP-LSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA- 94 (477)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH-HHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC-
Confidence 3344444443333322 4433567788887665 456789999999999 59999998765 33333333333321
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhh--hhhhhhhhH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAK--RFYPLFGLG 159 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qak--R~fgli~ag 159 (462)
.+.-+. +.|+ ....-+ ....|.+.+.....+...+.... -+-+++.|.++++|++ +.++..+..
T Consensus 95 ---~~~~~~--~~~~----~~~~~~----~~~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~ 160 (477)
T TIGR01301 95 ---ADIGHL--FGDN----LDKKTK----PRAIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFF 160 (477)
T ss_pred ---chhhhh--cccc----ccccch----hHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHH
Confidence 010000 0000 000000 01123344444444555556666 4899999999999875 689999999
Q ss_pred HHHHHHhhhhhHHHh
Q 012495 160 ANVALIFSGRTVKYF 174 (462)
Q Consensus 160 ~~lG~i~gg~~~~~l 174 (462)
.++|.++|..+.+..
T Consensus 161 ~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 161 MAIGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988877653
No 96
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.54 E-value=6.2e-05 Score=76.79 Aligned_cols=261 Identities=13% Similarity=0.132 Sum_probs=162.0
Q ss_pred hhhHHHHHHhhh----ccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHH
Q 012495 3 FCILFNYTILRD----TKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFG 78 (462)
Q Consensus 3 F~i~~~y~ilr~----~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~ 78 (462)
|+--.+||+.|- .++.+..+ .|-+-++++.+-+.... +==+.=.+.|-++||.++|+.+...+...++.-++||
T Consensus 35 fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i-~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~G 112 (448)
T COG2271 35 FIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSI-TYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFG 112 (448)
T ss_pred HHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHH-HHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHh
Confidence 344455677774 34444444 22235678877765443 2112335677889999999999999999999999898
Q ss_pred HHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhh
Q 012495 79 FLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGL 158 (462)
Q Consensus 79 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~a 158 (462)
+. .+.|...++++..+.+-+.--+- .-..+.+-++.+||.|..++-+.
T Consensus 113 fs-------------------------------~s~~~~~~l~~lng~fQg~Gwpp-~~~~i~~Wfsr~eRG~~~siWn~ 160 (448)
T COG2271 113 FS-------------------------------PSLFLFAVLWVLNGWFQGMGWPP-CARTITHWFSRKERGTWWSIWNT 160 (448)
T ss_pred hh-------------------------------hHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHcCccccCceEEEehh
Confidence 73 14567777778888876666663 77788999999999999999999
Q ss_pred HHHHHHHhhhhhH--HHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCc--c----ccc--
Q 012495 159 GANVALIFSGRTV--KYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVE---LPT--R----SKK-- 225 (462)
Q Consensus 159 g~~lG~i~gg~~~--~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~---~p~--~----~~~-- 225 (462)
.-|+|+-+.+.++ +++... ++|...+ ..+.+++.++.+..++..+...+ +|+ + +.+
T Consensus 161 shNiGGal~~~~~~la~~~~~--------~~w~~~f---~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~ 229 (448)
T COG2271 161 SHNIGGALAPLVALLAFFAFH--------GGWRAAF---YFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIY 229 (448)
T ss_pred hhhcccchHHHHHHHHHHHhc--------cchhHHH---HHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhh
Confidence 9999999888888 544311 1233222 22223333333334443443321 121 1 111
Q ss_pred cccCCC--CChHH-HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHH
Q 012495 226 KKEKPK--MGTME-SLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMM 301 (462)
Q Consensus 226 ~~~k~~--~~~~~-~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~ 301 (462)
++++++ .+.+| -.+.++++|++.+++...++--++-.-++-=-..++.|.-+-..+.+.+--.++=+.|+.. ++.+
T Consensus 230 ~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~G 309 (448)
T COG2271 230 EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAG 309 (448)
T ss_pred hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 122222 34444 4569999999999998877766666666555555666655544433343333444556655 4456
Q ss_pred HhhHHHH
Q 012495 302 LLSQFVF 308 (462)
Q Consensus 302 ~l~~~li 308 (462)
.++.++.
T Consensus 310 wlSDklf 316 (448)
T COG2271 310 WLSDKLF 316 (448)
T ss_pred HHHHHhc
Confidence 6777766
No 97
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.52 E-value=0.00047 Score=70.44 Aligned_cols=330 Identities=15% Similarity=0.153 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHhcccC-----chhHHHHH-HHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhh
Q 012495 41 PMAIGFMLLYTKLADKLS-----KQALFYTV-IVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRI 114 (462)
Q Consensus 41 ~~~~~~~~~~~~L~~r~~-----r~~v~~~~-l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 114 (462)
..+ .+=|.+|..||+.+ ||.-+.+. ...+.....+..+...-+.+..+.+ ..+.+. ..
T Consensus 26 ~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~---------~~~~~~------g~ 89 (403)
T PF03209_consen 26 LVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS---------SGPFWL------GL 89 (403)
T ss_pred HHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc---------ccccHH------HH
Confidence 344 45688999999988 66544332 2222332323333222222211111 111111 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHH
Q 012495 115 WSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKG 194 (462)
Q Consensus 115 w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~ 194 (462)
....+.|...++=-+..-+ -+-++++|.+++|+|.|.-+++-.---+|.++++.+.+.+-+ |....-+.+...
T Consensus 90 ~~a~l~F~l~G~G~~~s~T-~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~------~~s~~rL~~v~~ 162 (403)
T PF03209_consen 90 ALAALAFLLYGLGVHASGT-SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD------PFSPERLIQVIQ 162 (403)
T ss_pred HHHHHHHHHHHhhHhHhHH-HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc------ccCHHHHHHHHH
Confidence 2334445555554334334 599999999999999999999999999999999888775532 211111111101
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012495 195 MMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKA 274 (462)
Q Consensus 195 l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~ 274 (462)
.... +...+.++..+..+++. |+ ..+++++++.++.+.++.+.++|..+....++++..++.+.=|....-+..+
T Consensus 163 ~~a~-i~~~l~~ia~wg~E~r~---~~-~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~ 237 (403)
T PF03209_consen 163 GVAL-IALLLNLIALWGQEPRR---SR-RAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGE 237 (403)
T ss_pred HHHH-HHHHHHHHHHHhcccCC---cc-cccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhH
Confidence 1111 11111111112111111 11 1123455667889999999999999999999999988888878887777778
Q ss_pred hCCChh-hhhhHHhhHHHHHHHHHHHHHHhhH-HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchh
Q 012495 275 QFPSPN-EYSSFMGDFSTATGIATFTMMLLSQ-FVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTP 352 (462)
Q Consensus 275 ~~~~~~-~~~~f~g~~~~~~gi~~l~q~~l~~-~li~r~G~~~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p 352 (462)
-+.-+. |-+.. +..-+.-+++-+.+++ .+.+|.+.+....+.-. .+..+|..+...... +..+
T Consensus 238 Vfgmsv~eTT~L----ta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~---~~~~~f~lii~a~~~--------~~~~ 302 (403)
T PF03209_consen 238 VFGMSVGETTRL----TAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCL---LGALAFALIILAGPL--------GSPW 302 (403)
T ss_pred HcCCCHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH---HHHHHHHHHHHHHhc--------ccch
Confidence 776444 33332 3334444444344445 44457888777665554 355555544432111 1111
Q ss_pred HH--HHHHHHHHHHHHHHhhhhhccccchhhccccCCchhhh----ccceeeeeecccchhhHHHHHHHHHHHHhh
Q 012495 353 LL--AAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKV----KGKAAIDVVCNPLGKSGGALIQQFMILTFG 422 (462)
Q Consensus 353 ~~--~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~----k~K~~iD~l~~r~Gk~~gs~i~~~l~~~~~ 422 (462)
.+ ....+|. ...++..+--.+-+-+..++|. -.=.+.+....=+|..+|+.+-.......+
T Consensus 303 ~~~~~~~l~G~---------g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~ 369 (403)
T PF03209_consen 303 LFRPGVFLLGL---------GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFG 369 (403)
T ss_pred HHHHHHHHHHH---------hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 1233343 3344444444444444444431 133344555566667777776665555544
No 98
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.44 E-value=0.00034 Score=71.39 Aligned_cols=264 Identities=15% Similarity=0.095 Sum_probs=160.4
Q ss_pred HHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 012495 10 TILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIH 89 (462)
Q Consensus 10 ~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~ 89 (462)
.+.-|+-..+- +.+|-+++|+.++-+.=.+..+ ++=..||-+.||+|.|+.........++--+..++... |
T Consensus 31 ~l~s~l~~~i~-~~~~LS~~q~~ll~aiPil~Ga-llRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~------~ 102 (417)
T COG2223 31 TLFSPLGVFIK-SDFGLSEGQKGLLVAIPILVGA-LLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT------Y 102 (417)
T ss_pred HHHHHHHhhhc-cccCCCHHHHHHHHHHHHHHhH-HHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc------C
Confidence 33333333333 3366557889998886555554 67789999999999999987776655544333333211 1
Q ss_pred CchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhh
Q 012495 90 PQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGR 169 (462)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~ 169 (462)
| +.|.+.++-+..++-| .+.+ .-..++|.-+|+|+..-..|+.+ .+|+|.-+...
T Consensus 103 ~----------------------~~~~ll~~gll~G~~G-asFa-v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~ 157 (417)
T COG2223 103 P----------------------STWQLLVIGLLLGLAG-ASFA-VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQL 157 (417)
T ss_pred C----------------------chHHHHHHHHHHhccc-ceeh-cccccccccCChhhhhHHHHHhc-cccccHHHHHH
Confidence 1 3456666667777776 5677 48899999999999999999999 99999887665
Q ss_pred hHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHH
Q 012495 170 TVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRD 249 (462)
Q Consensus 170 ~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~ 249 (462)
+.-.+... .| .+.|...-. ..+...++....++...+.. ||..+ ++++.+. +.+|.+.++|....
T Consensus 158 ~~P~v~~~---~g--~~~w~~~~~----i~~~~l~v~~v~~~~~~~d~--p~~r~-~~~~~~~---~~~~~v~~~~~~W~ 222 (417)
T COG2223 158 VAPLVAVA---FG--FLAWRNVAG----IYVVALAIAAVLAWLGMNDV--PEHRA-SVKPQLP---AQLKAVFSNKDTWL 222 (417)
T ss_pred HHHHHHHH---Hh--hHHHHHHHH----HHHHHHHHHHHHHHHHhCCC--hhhhc-cccccch---hHHHHHhcCcchHH
Confidence 55443321 11 001222111 11111122112222222222 44211 1111111 67888888998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHH
Q 012495 250 LATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVL 324 (462)
Q Consensus 250 l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~ 324 (462)
++..-...--+..-+-..+..+.+++|++++..+..........|.+. =-+.+++-+|+|=++...+.-+.+
T Consensus 223 lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~---Rp~GG~LsDR~Gg~rv~~~~f~~~ 294 (417)
T COG2223 223 LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALA---RPLGGWLSDRIGGRRVTLAVFVGM 294 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH---HhccchhhhhccchhHHHHHHHHH
Confidence 776655544445556777888899999987755554433333333322 234679999999999888777754
No 99
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.42 E-value=0.00047 Score=73.20 Aligned_cols=138 Identities=12% Similarity=0.047 Sum_probs=85.6
Q ss_pred HHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccc-CchhHHHHHHHHHHHHHHHHHHHHhhc
Q 012495 6 LFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKL-SKQALFYTVIVPFIAFFGAFGFLLYPL 84 (462)
Q Consensus 6 ~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~-~r~~v~~~~l~~f~~~~~lf~~~l~p~ 84 (462)
-++|+.++..-.....+..|-++++...+...+. .+..+..+.-|+++||+ ||||.+.+......+..++.+..
T Consensus 22 ~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~-~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~---- 96 (493)
T PRK15462 22 YFSFYGMRALLILYLTNQLKYDDNHAYELFSAYC-SLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS---- 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----
Confidence 4567777777776665545544555666655544 44456778999999998 99999877766665554433310
Q ss_pred ccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhh--hhhhhhhhhhHHHH
Q 012495 85 SNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDE--AKRFYPLFGLGANV 162 (462)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~q--akR~fgli~ag~~l 162 (462)
+.+ . ..+...+..+..+ .+ ...+ ..-++++|.+++++ |.+.+++...+.|+
T Consensus 97 ----~~~---~-----------------~~~~l~l~li~iG-~G-~~~~-~~~alv~elfp~~~~~R~sgf~i~Y~~~nl 149 (493)
T PRK15462 97 ----EIH---P-----------------SFLYLSLAIIVCG-YG-LFKS-NVSCLLGELYEPTDPRRDGGFSLMYAAGNV 149 (493)
T ss_pred ----hcc---h-----------------hHHHHHHHHHHHh-cc-cccc-cHHHHHHHHCCCCCccccceehHHHHHHHH
Confidence 000 0 0000000011111 11 1223 24568999998874 55589999999999
Q ss_pred HHHhhhhhHHHhh
Q 012495 163 ALIFSGRTVKYFS 175 (462)
Q Consensus 163 G~i~gg~~~~~l~ 175 (462)
|..+++.+.+++.
T Consensus 150 G~~iap~l~g~L~ 162 (493)
T PRK15462 150 GSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888765
No 100
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.42 E-value=1.1e-05 Score=85.40 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=50.0
Q ss_pred HHHHHhhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhH
Q 012495 237 SLKFLVSSRYIRDLATLVVA-YGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGV 315 (462)
Q Consensus 237 ~l~~i~~s~yl~~l~~~v~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~ 315 (462)
+++..+++|.+....+++++ |....+..+..|- .-.+..+.++ .+.|......++.+++-..+.++..+|++++.
T Consensus 244 ~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~-~~~~~lG~s~---~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~ 319 (468)
T TIGR00788 244 GLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFC-ATTQCLPGGP---SFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL 319 (468)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEE-EEcccCCCCc---chhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 45556777877665555555 4443333322221 1111233344 45566666777666665677788889999999
Q ss_pred HHHHHHHH
Q 012495 316 AAKITPTV 323 (462)
Q Consensus 316 ~~~i~P~~ 323 (462)
++.+..++
T Consensus 320 ~l~~~~~l 327 (468)
T TIGR00788 320 LFGVTTLL 327 (468)
T ss_pred HHHHHHHH
Confidence 98877774
No 101
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.41 E-value=0.00048 Score=72.17 Aligned_cols=137 Identities=10% Similarity=0.082 Sum_probs=103.3
Q ss_pred hhHHHHHHhhhccceeee------cccCCCcch-hhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHH
Q 012495 4 CILFNYTILRDTKDVLVV------TAKGSSAEI-IPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGA 76 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~------~~~g~~a~~-l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~l 76 (462)
++++.|+++|.+|..+-. +..|-+.++ .+.+..... -.=.++-..-|+++||+|.||++.......++..++
T Consensus 30 ~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~-ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L 108 (511)
T TIGR00806 30 LYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLP-YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLL 108 (511)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHH-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 467888888888876432 224433566 666665443 233467778899999999999999998888887777
Q ss_pred HHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhh
Q 012495 77 FGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLF 156 (462)
Q Consensus 77 f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli 156 (462)
.++. .+.+.+.+.++.-++.-.... . ...++...++++|+.|..+..
T Consensus 109 ~~fa-------------------------------~Sl~~L~i~R~llGvaEA~~~-A-~~syI~~WfP~kER~ratsi~ 155 (511)
T TIGR00806 109 LLLG-------------------------------TSVWHMQLMEVFYSVTMAARI-A-YSSYIFSLVPPSRYQRAAAYS 155 (511)
T ss_pred HHHH-------------------------------HHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHCCHHHHHHHHHHH
Confidence 7653 134555566666677665555 3 889999999999999999999
Q ss_pred hhHHHHHHHhhhhhHHHh
Q 012495 157 GLGANVALIFSGRTVKYF 174 (462)
Q Consensus 157 ~ag~~lG~i~gg~~~~~l 174 (462)
.++..+|.++|+.+...+
T Consensus 156 ~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 156 RAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988874
No 102
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.29 E-value=0.00071 Score=72.03 Aligned_cols=120 Identities=12% Similarity=0.040 Sum_probs=87.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchh
Q 012495 29 EIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGP 108 (462)
Q Consensus 29 ~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (462)
++..++-.... ....+..+..|+++||+|||+++......+.+.-.+.++. |. .++
T Consensus 56 ~~~~~~~~~~~-ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~--~~---~~~------------------ 111 (502)
T TIGR00887 56 SVSAAVNGSAS-IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS--PG---SSP------------------ 111 (502)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc--cC---ccc------------------
Confidence 34556666444 4557889999999999999999987777666655444431 00 000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 109 LAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 109 i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
..+.|...+++++.++......+ ....+++|.+++++|.|..++.....++|.++|+.+...+.
T Consensus 112 --~~~~~~~~~~r~l~G~~~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 112 --KSVMATLCFWRFWLGVGIGGDYP-LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred --chHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01245666777777777666667 58899999999999999999999999999999888776543
No 103
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.26 E-value=0.0012 Score=66.00 Aligned_cols=201 Identities=8% Similarity=-0.075 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCC--chhHHH
Q 012495 114 IWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGV--DGWAVS 191 (462)
Q Consensus 114 ~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~--~~~~~~ 191 (462)
++.+.+-+...+.=....-+ ....|++|+.++|++.|..++..+..++|.++|+.+.+.+..... ..+.. +....+
T Consensus 10 ~~~~l~~~f~~g~G~~~lq~-~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~-~~~~~~~~~~~~~ 87 (310)
T TIGR01272 10 YVLFLGALFVLASGLTILQV-AANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGA-GDLSMQVATANAE 87 (310)
T ss_pred HHHHHHHHHHHHhhHHHHHh-hHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-cchhhhhhhhhHH
Confidence 33333333333333334555 599999999999999999999999999999999999887663210 00000 000000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccC-CCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012495 192 -LKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEK-PKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWK 269 (462)
Q Consensus 192 -~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k-~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~ 269 (462)
.....+...+++.+.+....+.. .+.||.+++++++ ++.+..+ .+..+|+|.+...++..++|..+..-+..-..
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~ 164 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIFAF--LPLPELQEADVARVSSGDTTQ-KTSAFQFTHLVLGALGIFVYVGAEVSAGSFLV 164 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--ccCCCCCcccccccccccccc-hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111221122222211111111 1223321111111 0000011 12356678777666777777655555555556
Q ss_pred HHHHhh--CCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 270 SKLKAQ--FPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 270 ~~~~~~--~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
.+.++. ++.+++..+. .....-....+.-++.+++.+|+|.++.+.+.-.
T Consensus 165 ~yl~~~~~~g~s~~~a~~---~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~ 216 (310)
T TIGR01272 165 NFLSDPHALGLPEDQAAH---FTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAF 216 (310)
T ss_pred HHHHhcccCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 666543 3433333222 2222222223467788899999999997765544
No 104
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.25 E-value=0.00046 Score=69.43 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=126.2
Q ss_pred hHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 012495 5 ILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPL 84 (462)
Q Consensus 5 i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~ 84 (462)
.+.+-++--|-...+-.+ .|-+.+++..++.... .++.++.++.|.++||+|||+.- ..|.+.|.+-++.-
T Consensus 46 a~~aDWLQGpY~Y~LY~~-yg~~~~qIa~Lf~~Gf-~Ss~i~g~~~G~laD~~Grk~~c----l~~cily~~scl~k--- 116 (354)
T PF05631_consen 46 AMAADWLQGPYLYALYES-YGFSEHQIAILFVAGF-ASSAIFGTFVGSLADRYGRKKAC----LLFCILYSLSCLTK--- 116 (354)
T ss_pred HHHHHHhhcchhHHHHHH-cCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCchHHH----HHHHHHHHHHHHHH---
Confidence 344444444444444433 5554678999999887 46689999999999999999975 34444554444421
Q ss_pred ccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHhh---CChhhhhhhhhhhh-hH
Q 012495 85 SNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISV-LFWGFANQI---TTVDEAKRFYPLFG-LG 159 (462)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~-lfwa~~ndi---~~~~qakR~fgli~-ag 159 (462)
..+ +.+...+-++.+++-.++..|. +-|-..-+. ++.|--.+.|.... .+
T Consensus 117 ---~~~----------------------~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~ 171 (354)
T PF05631_consen 117 ---HSS----------------------NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFG 171 (354)
T ss_pred ---hcc----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 111 3455555567888877776663 335444331 23333344566555 45
Q ss_pred HHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc--ccccCCCCChHHH
Q 012495 160 ANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSK--KKKEKPKMGTMES 237 (462)
Q Consensus 160 ~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~--~~~~k~~~~~~~~ 237 (462)
.++-.|.+|.+...+.+..+ .||. +++. .-.....+++.++ ...+ +|+.. +++++.+.+..++
T Consensus 172 n~~vAI~aGv~a~~l~~~~~-~g~v-aPF~----~a~~~l~~~~~~I------~~~W---~ENyg~~~~~~~~~~~~~~a 236 (354)
T PF05631_consen 172 NGVVAIGAGVVANVLADWFG-FGPV-APFD----AAIVLLAVAAVLI------LKTW---PENYGDTSSSSSLSGSFREA 236 (354)
T ss_pred hHHHHHHHhHHHHHHHHHhC-CCCc-chHH----HHHHHHHHHHHHH------Hhcc---cccCCCcccccchHHHHHHH
Confidence 66777888887776665433 2331 1111 1111111111111 2222 22211 1122223467789
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012495 238 LKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLK 273 (462)
Q Consensus 238 l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~ 273 (462)
.+.+.++|-+..+.+.-.++..+.-++-+.|.-.++
T Consensus 237 ~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~ 272 (354)
T PF05631_consen 237 WRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALD 272 (354)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceec
Confidence 999999998888888877777777666666666665
No 105
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.19 E-value=0.011 Score=60.42 Aligned_cols=241 Identities=11% Similarity=0.003 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHH--HH
Q 012495 44 IGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCL--FY 121 (462)
Q Consensus 44 ~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~--fy 121 (462)
++.+.--+++.+|+|+|+-+...+..+++.-++|. |..+ .+.|.+.+ +|
T Consensus 62 f~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~----pAa~-------------------------~~~y~~FL~~lF 112 (422)
T COG0738 62 FIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW----PAAS-------------------------SKSYGFFLVALF 112 (422)
T ss_pred HHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh----hhhh-------------------------hhhHHHHHHHHH
Confidence 44556678899999999998888887777655543 2111 13343333 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhh--ccCCCCC-chhHHHH-H-HHH
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLR--KNLGPGV-DGWAVSL-K-GMM 196 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~--~~~gp~~-~~~~~~~-~-~l~ 196 (462)
+.+.--+. +-+..-.|+.+.-++|++.|...+..+..++|.++|+.+.+.+--+. +...++. ..+..+. . ...
T Consensus 113 ila~Gi~~--LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~ 190 (422)
T COG0738 113 ILASGIGL--LETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQF 190 (422)
T ss_pred HHHhhhHH--HHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 66555542 23347889999999999999999999999999999999888775321 1111110 1111110 0 111
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccccc-ccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012495 197 SIVVLMGLSICGLYWWVNNNVELPTRSKKK-KEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQ 275 (462)
Q Consensus 197 ~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~-~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~ 275 (462)
+.....+.+.+... .....+.|+.++.+ ++.++.+ .+...++|+|+++.=.+..++|.-..+-...-...+..+.
T Consensus 191 pYl~~~~~lvll~v--~~~~~k~p~~~~~~~~~~~~~~--~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~ 266 (422)
T COG0738 191 PYLILAGLLVLLAV--LILLSKLPDLQVAAPSLGASGS--AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL 266 (422)
T ss_pred HHHHHHHHHHHHHH--HHHhccCCcCCccccccccccc--chHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 12122222222111 22233335433221 1111111 1667788999999988889999887766666666666664
Q ss_pred CCC-hhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH
Q 012495 276 FPS-PNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTV 323 (462)
Q Consensus 276 ~~~-~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~ 323 (462)
.+ +++.+++.- ...|++.. +-=+++.++++|+-+.+.+...-++
T Consensus 267 -~g~~~~~aa~~~-s~~~~~~~--vGRFig~~lm~~~~~~k~Laf~a~~ 311 (422)
T COG0738 267 -LGLNEQQAAYYL-SFFWVGFM--VGRFIGSALMSRIKPEKYLAFYALI 311 (422)
T ss_pred -CCccHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 44 333333321 11222221 1235677899999999999877764
No 106
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.19 E-value=0.00034 Score=73.36 Aligned_cols=144 Identities=13% Similarity=0.174 Sum_probs=104.8
Q ss_pred hhhHHHHHHhhhccceeeecc-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccC--chhHHHHHHHHHHHHHHHHHH
Q 012495 3 FCILFNYTILRDTKDVLVVTA-KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLS--KQALFYTVIVPFIAFFGAFGF 79 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~-~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~--r~~v~~~~l~~f~~~~~lf~~ 79 (462)
|+....+++.-|..+....+- .|++++..++.-.... ..+.+.+|.+|+.++|.+ |+|++.-.+..+.++. ++..
T Consensus 44 fl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~s-lg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~l-lY~~ 121 (488)
T KOG2325|consen 44 FLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASS-LGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNL-LYLA 121 (488)
T ss_pred HHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHH-HHHHhcchhhcccccccCCcccCHHHHHHHHHHHHH-HHHH
Confidence 455666677777777776550 2455777888888766 566799999999999988 7888766655555543 3433
Q ss_pred HHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhH
Q 012495 80 LLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLG 159 (462)
Q Consensus 80 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag 159 (462)
+-+ .|+ .+.|..-+-|++.|+-. -+.+ ..=+|++|..+++||.|.+...+.|
T Consensus 122 l~~------~~~--------------------~~~y~mL~~R~l~Gvg~-~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~ 173 (488)
T KOG2325|consen 122 LAY------VPN--------------------GVKYLMLVARILTGVGV-GNFA-VLRAYIADASTVEDRPRAFAATSGG 173 (488)
T ss_pred HHh------ccc--------------------chHHHHHHHHHHcCcCc-ccHH-HHHHHHHhccCccchHHHHHHhhhH
Confidence 221 111 13566667778888764 3567 4899999999999999999999999
Q ss_pred HHHHHHhhhhhHHHhhh
Q 012495 160 ANVALIFSGRTVKYFSN 176 (462)
Q Consensus 160 ~~lG~i~gg~~~~~l~~ 176 (462)
..+|.++|+.+-..++-
T Consensus 174 ~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 174 FVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHhHHHHHHHhh
Confidence 99999999988776654
No 107
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.16 E-value=7.5e-05 Score=63.46 Aligned_cols=102 Identities=10% Similarity=0.093 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY 121 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy 121 (462)
.+++..+..+++.||+|||+.+...........++.... .+.|...+.+
T Consensus 10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~ 58 (141)
T TIGR00880 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------------------------SNITVLIIAR 58 (141)
T ss_pred HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------------------------ccHHHHHHHH
Confidence 446788999999999999999877766555544433321 1344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
++.+.......+ ..++++.|.++++|+.+.++....+.++|..+|+.+...+.
T Consensus 59 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 59 FLQGFGAAFALV-AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 666666555666 59999999999999999999999999999999988877654
No 108
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.13 E-value=0.0005 Score=72.99 Aligned_cols=265 Identities=14% Similarity=0.103 Sum_probs=163.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
.++++.+-+.+. ..=.+.....+.|.||++.++.+ ..+.+...+|+++-+
T Consensus 80 ~~~l~~~~t~F~-v~Yii~~~p~~~L~~r~~ls~~l----~~~~~~w~~~~~~~~------------------------- 129 (495)
T KOG2533|consen 80 GNQLGVLDTVFY-VGYIIGQFPSGLLGDRFPLSKGL----SVSGILWGLFGFLTA------------------------- 129 (495)
T ss_pred hhhhhhHHHHHH-HHHHHHHhhHHHHHHhCChHHHH----HHHHHHHHHHHHHHH-------------------------
Confidence 366777777544 44457778999999999955554 444445555554321
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCch
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDG 187 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~ 187 (462)
..-+.|.+...++..+++.+...+ -+-.++..-++.+|+.+.+|...+..++|.++||.+...+-+.... ....+
T Consensus 130 --~~~s~~~~ialr~llGl~es~~wP-~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~--~~~~g 204 (495)
T KOG2533|consen 130 --AVHSFPGLIALRFLLGLFESGGWP-GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS--GGLAG 204 (495)
T ss_pred --HHhhhHHHHHHHHHHHHHhcccch-HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC--CCcCC
Confidence 012678888888999999988888 5999999999999999999999999999999999998765442221 23344
Q ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHHHhhhcC---CCc-ccc-----ccc---cCCCC--ChHHHHHHHhhcHHHHH
Q 012495 188 WAVSLKGMMSIVVLMGLSIC----GLYWWVNNNVE---LPT-RSK-----KKK---EKPKM--GTMESLKFLVSSRYIRD 249 (462)
Q Consensus 188 ~~~~~~~l~~~~~~~g~l~l----~~~~~~~~~~~---~p~-~~~-----~~~---~k~~~--~~~~~l~~i~~s~yl~~ 249 (462)
|-..+ ++-|.+.+ ..+.++..... ..+ +++ +.+ ++... --+.+++..+++|.+..
T Consensus 205 W~~~F-------iI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~ 277 (495)
T KOG2533|consen 205 WRWLF-------IIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWP 277 (495)
T ss_pred ceeeh-------hHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHH
Confidence 43221 22232222 12222222210 000 110 001 11101 24578888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhc--hhHHHHHHHHHHHHH
Q 012495 250 LATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFG--WGVAAKITPTVLLLT 327 (462)
Q Consensus 250 l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G--~~~~~~i~P~~~l~~ 327 (462)
.++..++..+..+.+.+....++++..+.++..+..++.-....|++. ..+.+.+.+|.. ...-..+.|...+..
T Consensus 278 ~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~---~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 278 FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVG---LILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999888888888888733344444444444444445544 344555555532 444444445544455
Q ss_pred HHHHHHHHHh
Q 012495 328 GVGFFSLLLF 337 (462)
Q Consensus 328 ~~~ff~l~~~ 337 (462)
.++...+...
T Consensus 355 ~~g~~~l~~~ 364 (495)
T KOG2533|consen 355 IIGAISLLAA 364 (495)
T ss_pred HHHHHHHHhh
Confidence 5555444443
No 109
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.003 Score=66.73 Aligned_cols=241 Identities=15% Similarity=0.122 Sum_probs=154.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
.++-+++....+ ...++...-.+.+.||+|-|+++.......++.- ++.|....
T Consensus 72 ~~~k~~i~ss~~-~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t-----~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 72 STEKGLIFSSFF-WGYILGQIPGGYLADKFGARRVFFISGLISALLT-----LLTPLAAS-------------------- 125 (466)
T ss_pred HHHHHHHHHHHH-HHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHH-----HHHHHHHH--------------------
Confidence 456677777554 4556677778999999999999877766555432 23332111
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCch
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDG 187 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~ 187 (462)
.+.|...+.++.-++...+..+ ..=+..+.-.|++|+.|+.+...+|.++|.+++-.+++.+++. ..|
T Consensus 126 ----~~~~~~~~~R~lqGl~~g~~~p-a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-------~~G 193 (466)
T KOG2532|consen 126 ----IGFYLLLVLRFLQGLGQGVLFP-AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-------SLG 193 (466)
T ss_pred ----hcchhhHHHHHHhHHHHhHHHh-hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-------CCC
Confidence 1334455667788877777777 4778888899999999999999999999999999888888754 124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc-------cccc--ccC----CCCChHHHHHHHhhcHHHHHHHHHH
Q 012495 188 WAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTR-------SKKK--KEK----PKMGTMESLKFLVSSRYIRDLATLV 254 (462)
Q Consensus 188 ~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~-------~~~~--~~k----~~~~~~~~l~~i~~s~yl~~l~~~v 254 (462)
|...+... ...|.+....+.+..+.- |++ |+++ ++| .+.+..-..+.+++||-+..+....
T Consensus 194 W~sifY~~----g~~g~i~~~~w~~~~~d~--P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~ 267 (466)
T KOG2532|consen 194 WPSIFYVF----GIVGLIWFILWFLFYSDS--PSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISA 267 (466)
T ss_pred CchHHHHH----HHHHHHHHHHHHHHhcCC--cccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHH
Confidence 54443211 222333333333232221 221 1110 011 0111233567888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhH-HHHHHHHHHHHHHhhHHHHHHhch
Q 012495 255 VAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDF-STATGIATFTMMLLSQFVFDKFGW 313 (462)
Q Consensus 255 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~-~~~~gi~~l~q~~l~~~li~r~G~ 313 (462)
+..+....++...--.+.++-.+-+-+-+++...+ +...-++.++-..+..++.+| ++
T Consensus 268 f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~l 326 (466)
T KOG2532|consen 268 FGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-IL 326 (466)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC
Confidence 99888888888888888888777666666766544 222223334456667777776 44
No 110
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.00 E-value=0.0037 Score=64.08 Aligned_cols=276 Identities=14% Similarity=0.028 Sum_probs=137.6
Q ss_pred HHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012495 9 YTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAI 88 (462)
Q Consensus 9 y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~ 88 (462)
-++.+.+.|..+... ++....++..+..- ..+.+++|+.|..+|+.|+||-+.-......+.+ .+.+...
T Consensus 40 ly~~~~~~~~g~~~~--~~~a~~gy~~aia~-llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~-~~~L~~i------ 109 (438)
T COG2270 40 LYFTSVAGAGGVDPA--SSTAYWGYASAIAG-LLIALLAPILGTIADYPGPRKKFFGFFTAIGIIS-TFLLWFI------ 109 (438)
T ss_pred HHHHHHHhhcCCCCc--chhhHHHHHHHHHH-HHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHH-HHHHHHh------
Confidence 345555666555442 22344566666444 4556899999999999999887654433332222 1222211
Q ss_pred CCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhh
Q 012495 89 HPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSG 168 (462)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg 168 (462)
| ++ ...|...++|+.+.+-...... ..=++.-|++++++.+|.=++=-+-+.+|.++-=
T Consensus 110 -~------------~~-------s~~~~~l~~~il~~i~~~~s~V-fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~l 168 (438)
T COG2270 110 -P------------PG-------SYLLLLLLFLILASIGFEFSNV-FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILL 168 (438)
T ss_pred -C------------CC-------chHHHHHHHHHHHHHhcchhhe-ehhhHhhhhcCccccCcccccccccccccchHHH
Confidence 1 10 1456777888888887666655 5889999999999998863333222333322211
Q ss_pred hhHHHhhhhh--c-------cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccC----CCCChH
Q 012495 169 RTVKYFSNLR--K-------NLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEK----PKMGTM 235 (462)
Q Consensus 169 ~~~~~l~~~~--~-------~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k----~~~~~~ 235 (462)
.......... + .+.|+. +... .... .++++-.+..-.=+-++.+.++..+.+..+ .-..++
T Consensus 169 i~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~----ri~~-~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~ 242 (438)
T COG2270 169 IFVVLGFALGQQTGITIILLGLPPAD-GEDV----RITG-LLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELK 242 (438)
T ss_pred HHHHHHHhcccccceeEEeeccCccc-cccc----hhHH-HHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHH
Confidence 1110000000 0 011111 1111 1111 111111100000011222222211000000 001356
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhH
Q 012495 236 ESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGV 315 (462)
Q Consensus 236 ~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~ 315 (462)
+.+|.+++.+-+....+.-+.|.=..|-+-..=..+.++.++..+ .-+..+...++++++.-.++.|+|-+|+|++.
T Consensus 243 ~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~---~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~ 319 (438)
T COG2270 243 STFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSS---TELLLIGIALSVVAALGAIIAGFLDERFGSKP 319 (438)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 778888888864444333344433333333333455555666544 33334456666777656778889999999997
Q ss_pred HHHHHHHHH
Q 012495 316 AAKITPTVL 324 (462)
Q Consensus 316 ~~~i~P~~~ 324 (462)
++.+.-++.
T Consensus 320 vl~~~lvi~ 328 (438)
T COG2270 320 VLMIGLVIL 328 (438)
T ss_pred eehHHHHHH
Confidence 776655543
No 111
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.91 E-value=0.0005 Score=76.53 Aligned_cols=103 Identities=8% Similarity=-0.026 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHH
Q 012495 41 PMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120 (462)
Q Consensus 41 ~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~f 120 (462)
...++..++.+.++||+|||+++.......+++.+++++. + +.+...++
T Consensus 606 l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~---------~----------------------s~~~ll~~ 654 (742)
T TIGR01299 606 LAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG---------N----------------------SESAMIAL 654 (742)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH---------c----------------------cHHHHHHH
Confidence 4556788899999999999999877777666666555532 1 11112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 121 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 121 yv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.++.+.......+ ..+++++|++|.++|.+.+|+.++++.+|.++|+.+.+.+.
T Consensus 655 ~~l~g~~~~~~~~-~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 655 LCLFGGLSIAAWN-ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444556 48899999999999999999999999999999998876543
No 112
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.0062 Score=64.29 Aligned_cols=268 Identities=13% Similarity=0.087 Sum_probs=139.5
Q ss_pred cchhhHHHHHH---HHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 28 AEIIPFLKTWV---NLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 28 a~~l~~l~~~~---~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
.+++..++... ....+++-+..-+.++||+|||..+.+........-.++++-..
T Consensus 55 ~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~---------------------- 112 (485)
T KOG0569|consen 55 DSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS---------------------- 112 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 34555555432 22455667788889999999998877766544443333332110
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCC
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPG 184 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~ 184 (462)
....+.+.+-+++.++...+..+ ..=-|..|+.|.+-|...=.+...+.++|.++|..+.. .+-+|.
T Consensus 113 ------~~~~e~li~GR~i~Gl~~gl~~~-~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l-----~~ilGt- 179 (485)
T KOG0569|consen 113 ------APSFEMLILGRLIVGLACGLSTG-LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL-----PSLLGT- 179 (485)
T ss_pred ------hhhHHHHHHHHHHHHHHhHHHHH-HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc-----HHhcCC-
Confidence 01234455556778877766666 47779999999999987777777777777776644332 111332
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------------------CCCc---c--c---cccccCCCC-ChH
Q 012495 185 VDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNV--------------------ELPT---R--S---KKKKEKPKM-GTM 235 (462)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~--------------------~~p~---~--~---~~~~~k~~~-~~~ 235 (462)
.+.|..-+ .+..+.+.+.+....+..+.. +-.+ + + ++.++++.. .-.
T Consensus 180 ~~~W~~l~----~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~ 255 (485)
T KOG0569|consen 180 EDLWPYLL----AFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQ 255 (485)
T ss_pred CcchHHHH----HHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccC
Confidence 12343221 111222222222211111110 0000 0 0 000000001 122
Q ss_pred HHHHHHhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHh
Q 012495 236 ESLKFLVSSRYIRD----LATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKF 311 (462)
Q Consensus 236 ~~l~~i~~s~yl~~----l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~ 311 (462)
.+++.++++|.++. .+.+.+..+++..-.-..+....-+...-+.+.+.+ .+..+|++++...++.+.+++|.
T Consensus 256 ~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~---an~~~g~v~~~~t~~~~~lid~~ 332 (485)
T KOG0569|consen 256 ISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQY---ANLGIGIVNLLSTLVSPFLIDRL 332 (485)
T ss_pred CcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566666765443 333344444444333333333333333333333333 35667777776778889999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Q 012495 312 GWGVAAKITPTVLLLTGVGFFSLLLF 337 (462)
Q Consensus 312 G~~~~~~i~P~~~l~~~~~ff~l~~~ 337 (462)
|=|..+++.-.++.+..+.+......
T Consensus 333 gRRpLll~~~~~~~~~~~~~~~~~~l 358 (485)
T KOG0569|consen 333 GRRPLLLISLSLMAVALLLMSIALFL 358 (485)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97777777766655555544444433
No 113
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.81 E-value=0.0013 Score=68.06 Aligned_cols=118 Identities=14% Similarity=0.239 Sum_probs=78.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
++...++..... ...++..++.++++||+|||+++.......+..++++.+. ++
T Consensus 256 ~~~~~~~~~~~~-i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---------~~---------------- 309 (437)
T TIGR00792 256 PELFSYMGSIAI-VAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA---------GS---------------- 309 (437)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---------ch----------------
Confidence 445565555444 4557889999999999999999877766555544433220 00
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh-------hhhhhhhhhhhhHHHHHHHhhhhhHHHhhhh
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTV-------DEAKRFYPLFGLGANVALIFSGRTVKYFSNL 177 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~-------~qakR~fgli~ag~~lG~i~gg~~~~~l~~~ 177 (462)
+.|...++.+..+.......+ ..|++++|..+. |+..+.+++.+....+|..+|+.+.+.+.+.
T Consensus 310 -----~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 310 -----NLPLILVLIILAGFGQNFVTG-LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333444444444434556 599999999874 3456778999999999999988888776543
No 114
>PTZ00207 hypothetical protein; Provisional
Probab=97.76 E-value=0.0046 Score=67.10 Aligned_cols=115 Identities=10% Similarity=0.016 Sum_probs=81.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
.+++.++...... .. .+.+..|+++||+|||+++.+....+.+.++++++..- +.+
T Consensus 61 ~~~l~~i~svg~~-~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~---~~i------------------- 116 (591)
T PTZ00207 61 QRDLSTITTVGIA-VG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQ---EVI------------------- 116 (591)
T ss_pred HHHHHHHHHHHHH-HH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc---ccc-------------------
Confidence 5678887765443 32 35556799999999999999999999988888876421 000
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhH
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTV 171 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~ 171 (462)
..+.|...++++..+.-...... ..-..+.+.++ +++.+..++...+.++|..+.+.+.
T Consensus 117 ---~~s~~~l~l~r~l~G~G~~~~~~-~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~ 175 (591)
T PTZ00207 117 ---EGSVVRLSVYNGLMTLGCMLFDL-GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQ 175 (591)
T ss_pred ---cCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 02567777788777765544333 24556777885 7889999999999999997654443
No 115
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.75 E-value=0.001 Score=68.31 Aligned_cols=118 Identities=14% Similarity=0.007 Sum_probs=81.4
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
|-++++...+..... ...++..+..++++||++|++.+..........++++.. .+
T Consensus 251 g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---------~~-------------- 306 (406)
T PRK11551 251 GLSRSQAGLVQIAFN-IGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA---------AP-------------- 306 (406)
T ss_pred CCChhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---------cC--------------
Confidence 433566777776555 455688899999999999999877654444333322221 11
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+.|...+..+..+.......+ ..+++++|.++.+++.|..++.....++|..+|+.+.+.+.
T Consensus 307 --------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~ 368 (406)
T PRK11551 307 --------SFAGMLLAGFAAGLFVVGGQS-VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLL 368 (406)
T ss_pred --------cHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence 123333333444444334456 58999999999999999999999999999999988887664
No 116
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.73 E-value=0.0047 Score=66.02 Aligned_cols=102 Identities=18% Similarity=0.285 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHH
Q 012495 41 PMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120 (462)
Q Consensus 41 ~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~f 120 (462)
....+-..++|.++||+|||+++..++...+++=.+.++. -+.|.+.++
T Consensus 129 ~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------------------------~~~~~~~~~ 177 (521)
T KOG0255|consen 129 LGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------------------------PNYWMFLIF 177 (521)
T ss_pred HHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------------------------CcHHHHHHH
Confidence 4556777888999999999999998887666654433331 267899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 121 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 121 yv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+...++..+...+ .-+.++.|++++++|.+.-.+ ....-.+..++....+++.
T Consensus 178 Rfl~G~~~~~~~~-~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~ 230 (521)
T KOG0255|consen 178 RFLSGFFGSGPLT-VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT 230 (521)
T ss_pred HHHHHhhccchhH-HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999998888 699999999999999999999 6666667776666666654
No 117
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.67 E-value=0.00048 Score=68.07 Aligned_cols=136 Identities=13% Similarity=0.038 Sum_probs=97.1
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchh-HHHHHHHHHHHHHHHHHHHHhhcc
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQA-LFYTVIVPFIAFFGAFGFLLYPLS 85 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~-v~~~~l~~f~~~~~lf~~~l~p~~ 85 (462)
..+......-+....+..|.+.++..+...... ....+..+..++++||++||+ .+............++...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 262 (352)
T cd06174 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFG-LGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA----- 262 (352)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-----
Confidence 333444444444444432333667777777655 455789999999999999999 7776666666655544431
Q ss_pred cccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHH
Q 012495 86 NAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALI 165 (462)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i 165 (462)
.+.|.....++..+.......+ ..+++++|..++|++.|.++..+...++|..
T Consensus 263 --------------------------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (352)
T cd06174 263 --------------------------PSLALLLVALLLLGFGLGFAFP-ALLTLASELAPPEARGTASGLFNTFGSLGGA 315 (352)
T ss_pred --------------------------ccHHHHHHHHHHHHHHHhccch-hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 0234455556666666656666 5999999999999999999999999999999
Q ss_pred hhhhhHHHhh
Q 012495 166 FSGRTVKYFS 175 (462)
Q Consensus 166 ~gg~~~~~l~ 175 (462)
+++.+.+.+.
T Consensus 316 i~~~i~g~l~ 325 (352)
T cd06174 316 LGPLLAGLLL 325 (352)
T ss_pred HHHHHHHHHh
Confidence 9999888765
No 118
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.64 E-value=0.0012 Score=68.28 Aligned_cols=126 Identities=15% Similarity=0.015 Sum_probs=81.8
Q ss_pred eeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHH
Q 012495 18 VLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKL 97 (462)
Q Consensus 18 ~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~ 97 (462)
.+..+..|.++++.+++..... ...++..++.+++.||.++++.+..........+.++++ ++
T Consensus 248 ~~~~~~~g~~~~~~g~~~~~~~-~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~------- 310 (417)
T PRK10489 248 ALADEVWQMGAAQIGLLYAAVP-LGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL---------MP------- 310 (417)
T ss_pred HHHHhccCCChhHhHHHHHHHH-HHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc---------cc-------
Confidence 3343334444666778777554 455678889999999987777766555444444333321 11
Q ss_pred hhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 98 LNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 98 ~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
+.|...+.....+.......+ ..++++.|..++|++.|.+++.+...++|..+|+.+.+.+.+
T Consensus 311 ---------------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 311 ---------------MWILAVLCLALFGYLSAISSL-LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 122222223333333333334 578999999999999999999999999999999888877653
No 119
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.61 E-value=0.00064 Score=70.40 Aligned_cols=115 Identities=7% Similarity=0.139 Sum_probs=77.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
.++.+++.....+ +..+..+..++++||+|||+.+......+...++++++. +
T Consensus 261 ~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~---------~----------------- 313 (420)
T PRK09528 261 TRVFGYLNSFQVF-LEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA---------T----------------- 313 (420)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc---------c-----------------
Confidence 4566777775554 445788999999999999998776666555554444331 1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhh-hhhHHHHHHHhhhhhHHHhh
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPL-FGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgl-i~ag~~lG~i~gg~~~~~l~ 175 (462)
+.|.....++..++-...... ..+.+++|.++.+++...++. .+.+.++|.++|+...+.+.
T Consensus 314 -----~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~ 376 (420)
T PRK09528 314 -----GPLEVSILKLLHAFEVPFLLV-GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY 376 (420)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 223333344444443333334 467899999999988888766 67778899998888877664
No 120
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.55 E-value=0.0033 Score=63.37 Aligned_cols=120 Identities=14% Similarity=0.258 Sum_probs=73.5
Q ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhh
Q 012495 22 TAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNIL 101 (462)
Q Consensus 22 ~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~ 101 (462)
+..|.++++..++..... .......+..++++||++||+++..........+.++.. +
T Consensus 228 ~~~g~~~~~~g~~~~~~~-~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---------~------------ 285 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAA-GLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA---------D------------ 285 (375)
T ss_pred HHcCCCHHHHHHHHHHHH-HHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---------H------------
Confidence 334444566666655433 233456788999999999999876655443333222211 0
Q ss_pred CCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 102 GPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 102 ~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|......+..+.......+ ..+.++.|.++. |+.+..++.+...++|..+|+.+.+.+.
T Consensus 286 ----------~~~~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 286 ----------NSLWALLMLQLLNAIFIGILAG-IGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0233333333333333223344 467788898875 4559999999999999999988877654
No 121
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.55 E-value=0.0025 Score=67.10 Aligned_cols=130 Identities=14% Similarity=-0.026 Sum_probs=75.7
Q ss_pred cceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHH
Q 012495 16 KDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALAD 95 (462)
Q Consensus 16 ~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~ 95 (462)
.+.+..+..|-++++..+...... ...++..+..|+++||++||+.............. ...++ .+.
T Consensus 281 ~p~yl~~~~g~s~~~a~~~~~~~~-~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~---~~~~~----~~~----- 347 (467)
T PRK09556 281 SPVYAFQELGFSKEDAINTFTLFE-IGALVGSLLWGWLSDLANGRRALVACIALALIIFT---LGVYQ----HAT----- 347 (467)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH---HHHHH----hcC-----
Confidence 333443334433555566655444 34578999999999999999876544333322211 11111 001
Q ss_pred HHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH-HHHhhhhhHHHh
Q 012495 96 KLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV-ALIFSGRTVKYF 174 (462)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l-G~i~gg~~~~~l 174 (462)
+.|...+.....+........ .....++|..++|++.+..|+.+..+++ |..+++.+++.+
T Consensus 348 -----------------~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i 409 (467)
T PRK09556 348 -----------------SEYMYLASLFALGFLVFGPQL-LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMI 409 (467)
T ss_pred -----------------cHHHHHHHHHHHHHHHhhHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHH
Confidence 112121222222322111122 2346677999999999999999999997 778888888887
Q ss_pred hh
Q 012495 175 SN 176 (462)
Q Consensus 175 ~~ 176 (462)
.+
T Consensus 410 ~~ 411 (467)
T PRK09556 410 AD 411 (467)
T ss_pred hc
Confidence 64
No 122
>PRK10504 putative transporter; Provisional
Probab=97.53 E-value=0.0044 Score=65.06 Aligned_cols=123 Identities=7% Similarity=-0.010 Sum_probs=79.6
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|.++.+..++..... ...+...++.++++||+|||+++........+...++.+. +++
T Consensus 292 ~g~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--------~~~------------ 350 (471)
T PRK10504 292 LGFSPFHAGLMMIPMV-LGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV--------ALL------------ 350 (471)
T ss_pred cCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc--------ccc------------
Confidence 4444566676666444 4445677999999999999999876666555443333321 010
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
.+.|...+..+..++-.....+ ..+..+.+..++|++.+.+++.+...++|..+|+.+.+.+-.
T Consensus 351 --------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 351 --------GWYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222233344443334455 477888889999999999999999988888888877765543
No 123
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.52 E-value=0.0011 Score=66.68 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=82.8
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHH-HHHHHHHhhcc
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFF-GAFGFLLYPLS 85 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~-~lf~~~l~p~~ 85 (462)
..++...+.-+.+..+..|.++++...+...... ...+..+..++++||+|||+.+........... .+.....
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---- 307 (394)
T TIGR00883 233 TTFYLITTYLPTYLTQTLGLSANSALLVLMLSLI-LFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---- 307 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 3344444444444433344335666776665554 446788999999999999997764433222211 1111100
Q ss_pred cccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhh-hhHHHHHH
Q 012495 86 NAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLF-GLGANVAL 164 (462)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli-~ag~~lG~ 164 (462)
+++ +.|......+..+.......+ ..++.++|.+++|++.+.+++. +.+..+|.
T Consensus 308 ---~~~---------------------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~ 362 (394)
T TIGR00883 308 ---DSG---------------------SFTLFFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFG 362 (394)
T ss_pred ---cCC---------------------chHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEeeehhHhHHHHHh
Confidence 000 223333444555555445556 5899999999999999999985 45556777
Q ss_pred HhhhhhHHHhh
Q 012495 165 IFSGRTVKYFS 175 (462)
Q Consensus 165 i~gg~~~~~l~ 175 (462)
.+|+.+.+.+.
T Consensus 363 ~~~p~~~g~l~ 373 (394)
T TIGR00883 363 GFAPYIAAALV 373 (394)
T ss_pred hHHHHHHHHHH
Confidence 77777666554
No 124
>TIGR00895 2A0115 benzoate transport.
Probab=97.50 E-value=0.0019 Score=65.33 Aligned_cols=117 Identities=10% Similarity=-0.072 Sum_probs=75.5
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|.++++......... ...++..++.++++||++||++...........+.+.. . .
T Consensus 280 ~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~-------------- 335 (398)
T TIGR00895 280 LGFSLSLAATGGALFN-FGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGS-T--------L-------------- 335 (398)
T ss_pred cCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-H--------h--------------
Confidence 3433566666666554 45578899999999999998544332222222211111 0 0
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
.+.|......+..+.......+ ..+++++|.++++++.+.+++......+|..+|+.+.+.
T Consensus 336 --------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 336 --------FSPTLLLLLGAIAGFFVNGGQS-GLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred --------hCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 0223333344445555445666 589999999999999999999999999999988766553
No 125
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.50 E-value=0.0019 Score=64.40 Aligned_cols=119 Identities=11% Similarity=-0.029 Sum_probs=83.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
|.++++.+.+..... ...++..+..+++.||.+|+++............++.++. ++
T Consensus 243 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~------------- 299 (365)
T TIGR00900 243 GRGSTHYGWVLAAFG-LGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT---------PP------------- 299 (365)
T ss_pred CCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh---------ch-------------
Confidence 333567777777555 4557888999999999999998776544444433332221 00
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+.|...+..+..+.......+ ..++++.|.+++|++.+.+++.+...++|..+|+.+.+.+.
T Consensus 300 --------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 300 --------NFPLFLVLWFAIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134444445555555545555 58999999999999999999999999999998887776553
No 126
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.50 E-value=0.0075 Score=64.03 Aligned_cols=138 Identities=7% Similarity=-0.071 Sum_probs=73.9
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH-HHHHHHHHHhhcc
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIA-FFGAFGFLLYPLS 85 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~-~~~lf~~~l~p~~ 85 (462)
+.|+..-..-+.+..+..|-+.++....... .....++..+..|+++||+|||+++......+.+ ...++....
T Consensus 264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~---- 338 (490)
T PRK10642 264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIA-IMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN---- 338 (490)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 4455444444444433334223333333332 3345567788999999999999987655433222 111111100
Q ss_pred cccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHH
Q 012495 86 NAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALI 165 (462)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i 165 (462)
++ +.+......++.++....... ..+.++.+.+++++|.+..+.....+.++..
T Consensus 339 ---~~----------------------~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~ 392 (490)
T PRK10642 339 ---SN----------------------VIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAG 392 (490)
T ss_pred ---CC----------------------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHH
Confidence 00 111122222333333223334 3677888999999999989876555566666
Q ss_pred hhhhhHHHhh
Q 012495 166 FSGRTVKYFS 175 (462)
Q Consensus 166 ~gg~~~~~l~ 175 (462)
+++.+..++.
T Consensus 393 ~~p~i~g~l~ 402 (490)
T PRK10642 393 LTPTLAAWLV 402 (490)
T ss_pred HHHHHHHHHH
Confidence 6776666554
No 127
>PRK09848 glucuronide transporter; Provisional
Probab=97.45 E-value=0.012 Score=61.47 Aligned_cols=141 Identities=12% Similarity=0.132 Sum_probs=84.2
Q ss_pred hHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 012495 5 ILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPL 84 (462)
Q Consensus 5 i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~ 84 (462)
...++...-..-+.+..+..|. ++..+.+.........++..|+.+++.||+|+|+++.+....+++.+.++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~----- 313 (448)
T PRK09848 240 VLISTFAVSASSLFYVRYVLND-TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW----- 313 (448)
T ss_pred HHHHHHHHhhhheeeEeeecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444444444444445444553 2334433332323445678899999999999999988877666555443332
Q ss_pred ccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhh-------hhhhhhhh
Q 012495 85 SNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEA-------KRFYPLFG 157 (462)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qa-------kR~fgli~ 157 (462)
.++ .+.|......+..++-.....+ ..|+..+|..|.+|. ...+++.+
T Consensus 314 ----~~~--------------------~~~~~~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~~~~ 368 (448)
T PRK09848 314 ----VSV--------------------WSLPVALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYSLFS 368 (448)
T ss_pred ----cCc--------------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHHHHH
Confidence 111 0223222222333333334445 589999999998764 44678888
Q ss_pred hHHHHHHHhhhhhHHHhhh
Q 012495 158 LGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 158 ag~~lG~i~gg~~~~~l~~ 176 (462)
....+|..+|+.+.+.+-.
T Consensus 369 ~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 369 FTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888877766543
No 128
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.45 E-value=0.0053 Score=63.16 Aligned_cols=137 Identities=14% Similarity=0.016 Sum_probs=84.3
Q ss_pred hHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 012495 5 ILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPL 84 (462)
Q Consensus 5 i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~ 84 (462)
...+|...-..-+.+..+ .|-++++.+++..... ..+++..+..+++.||.+||+............+.++.. .
T Consensus 217 ~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~-i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~--~-- 290 (393)
T PRK09705 217 INGGYASLIAWLPAFYIE-IGASAQYSGSLLALMT-LGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW--L-- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH--c--
Confidence 334554444444555544 4655677787777655 455788999999999999999877665444443332221 1
Q ss_pred ccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhhhhhhhhhhhhHHHHH
Q 012495 85 SNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITT-VDEAKRFYPLFGLGANVA 163 (462)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~-~~qakR~fgli~ag~~lG 163 (462)
+++ ..+... ...++-.....+ ..++.+.|..+ +|++.+.++++...++++
T Consensus 291 ----~~~---------------------~~~~~~---~l~g~g~g~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 341 (393)
T PRK09705 291 ----PLQ---------------------LPVLWA---MVCGLGLGGAFP-LCLLLALDHSVQPAIAGKLVAFMQGIGFII 341 (393)
T ss_pred ----cch---------------------HHHHHH---HHHHHhccchHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 111 001000 111111112334 35566667775 678999999999999999
Q ss_pred HHhhhhhHHHhhh
Q 012495 164 LIFSGRTVKYFSN 176 (462)
Q Consensus 164 ~i~gg~~~~~l~~ 176 (462)
..+|+.+.+.+.+
T Consensus 342 ~~~gp~~~G~l~~ 354 (393)
T PRK09705 342 AGLAPWFSGVLRS 354 (393)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887764
No 129
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.44 E-value=0.0084 Score=61.36 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY 121 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy 121 (462)
..++..+..+++.||++|||.+..........+.+.+.. + +.|...+..
T Consensus 261 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~----------------------~~~~~~~~~ 309 (399)
T PRK05122 261 AFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA---------P----------------------SPWMALIGA 309 (399)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh---------c----------------------cHHHHHHHH
Confidence 445667899999999999998877666555555433321 1 123333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+..+.......+ ...+.+.|.+++|++.|.++..+...++|..+++.+.+.+.
T Consensus 310 ~l~G~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 362 (399)
T PRK05122 310 ALTGFGFSLVFP-ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA 362 (399)
T ss_pred HHHHHhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443334444 35567788999999999999999999999888887776654
No 130
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.43 E-value=0.018 Score=61.22 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=77.4
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|-++++.+++.......+.++..++.|+++||++|||.+.......++..+++.... . .++
T Consensus 253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~--~---~~~------------- 314 (491)
T PRK11010 253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLS--I---TDK------------- 314 (491)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--h---ccc-------------
Confidence 4444777888753233345578899999999999998876544333333322222211 0 001
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
+.|..........+....... .++++..|.++.+.+.+-+++.+...++|.++++.+.+.+.+
T Consensus 315 ---------~~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~ 377 (491)
T PRK11010 315 ---------NLYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE 377 (491)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112211112222222224445 479999999999999999999999999999888877776553
No 131
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.43 E-value=0.002 Score=65.90 Aligned_cols=102 Identities=9% Similarity=0.053 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY 121 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy 121 (462)
..++..+..++++||++||+++........+..+..+.. + +.|...+..
T Consensus 270 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------~----------------------~~~~~~~~~ 318 (408)
T PRK09874 270 AALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV---------Q----------------------TPLQLGILR 318 (408)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh---------c----------------------cHHHHHHHH
Confidence 345678889999999999998876655444333222210 0 123333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+..+.......+ ...+.+.|..+++++.|.++......++|..+|+.+.+.+.
T Consensus 319 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~ 371 (408)
T PRK09874 319 FLLGAADGALLP-AVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS 371 (408)
T ss_pred HHHHhhhHhhHH-HHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence 334443334445 47778888999999999999999999999999888877664
No 132
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.39 E-value=0.0026 Score=63.63 Aligned_cols=117 Identities=18% Similarity=0.093 Sum_probs=77.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
.++...+..... ...++..+..++++||++||+.+..........+.+..+. ++ .
T Consensus 239 ~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------~~-------------~-- 293 (377)
T TIGR00890 239 DGFLVLAVSISS-IFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI---------PM-------------L-- 293 (377)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc---------cc-------------c--
Confidence 445566665544 3556788999999999999999877666655554433321 00 0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+.+......+..+.......+ .+.++++|.++++++.|.+++.+...++|..+|+.+.+.+.
T Consensus 294 -----~~~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 355 (377)
T TIGR00890 294 -----NDVLFLATVALVFFTWGGTIS-LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL 355 (377)
T ss_pred -----hhHHHHHHHHHHHHHhccchh-ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111222222223345 47889999999999999999999999999999998887654
No 133
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.36 E-value=0.0026 Score=67.13 Aligned_cols=121 Identities=7% Similarity=-0.015 Sum_probs=79.0
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|-++++.+.+.+.... ..++..+..++++||++||+++..+.....+..++.... .++
T Consensus 306 ~g~~~~~~g~~~~~~~~-~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~------------- 364 (496)
T PRK03893 306 LGYDPHTVANVLFFSGF-GAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-------GGA------------- 364 (496)
T ss_pred cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-------ccc-------------
Confidence 44446778888876654 556889999999999999998766544333322211110 000
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+.|.........+..+..... ...+++.|.++.|++.+.+++.....++|..+|+.+.+.+.
T Consensus 365 ---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~ 426 (496)
T PRK03893 365 ---------NVWVLGLLLFFQQMLGQGISG-LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA 426 (496)
T ss_pred ---------HHHHHHHHHHHHHHHhcccch-hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh
Confidence 122222222222233322233 46778999999999999999999999999999998887765
No 134
>PRK09669 putative symporter YagG; Provisional
Probab=97.36 E-value=0.016 Score=60.67 Aligned_cols=118 Identities=14% Similarity=0.268 Sum_probs=71.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchh
Q 012495 29 EIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGP 108 (462)
Q Consensus 29 ~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (462)
+....+..... ...++..|++++++||+|+|+.+......++....... .. .++
T Consensus 264 ~~~~~~~~~~~-i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~--~~------~~~----------------- 317 (444)
T PRK09669 264 DLATLFLVTGM-IAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIF--FI------PPS----------------- 317 (444)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH--Hh------Ccc-----------------
Confidence 33344444333 44467889999999999999998776655443222111 11 111
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhh---h----hhhhhhhHHHHHHHhhhhhHHHhhhh
Q 012495 109 LAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAK---R----FYPLFGLGANVALIFSGRTVKYFSNL 177 (462)
Q Consensus 109 i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qak---R----~fgli~ag~~lG~i~gg~~~~~l~~~ 177 (462)
+.|...+.-+..++-.....+ ..|+.++|+.|.+|.| | .++..+....+|..+|+.+.+.+.+.
T Consensus 318 ----~~~~~~~~~~i~g~~~~~~~~-~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 318 ----NVWLIFALNILFNFIQNLTTP-LQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333444554445556 6999999999876643 3 46777667778887777777665543
No 135
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.01 Score=62.15 Aligned_cols=142 Identities=15% Similarity=0.211 Sum_probs=97.5
Q ss_pred hhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012495 4 CILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYP 83 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p 83 (462)
|...++.+-..+-.-.+.-..|. +|..++.......+.+++..+.+.+|++|+|+|+++.++.....+.++++.+.
T Consensus 247 ~~~~~~~i~~s~~~yy~~y~lg~-~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~--- 322 (467)
T COG2211 247 LLFIAFNIRGSIMVYYVTYVLGD-PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT--- 322 (467)
T ss_pred HHHHHHHHHhhhhheeEEEEcCC-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh---
Confidence 34445555555555555555554 68888777766777776679999999999999999999988777777665542
Q ss_pred cccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhh-------hhhhh
Q 012495 84 LSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKR-------FYPLF 156 (462)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR-------~fgli 156 (462)
|. .+.|...++.+...+-.+...+ +-|+.++|+-|.+|-|- .|+..
T Consensus 323 ------~~--------------------~~~~l~~~~~~i~~~g~~~~~~-l~wam~~d~vDyge~~TG~R~eGi~~s~~ 375 (467)
T COG2211 323 ------PA--------------------GSVVLIVVALIIAGVGTGIANP-LPWAMVADTVDYGEWKTGVRREGIVYSGM 375 (467)
T ss_pred ------cC--------------------cchHHHHHHHHHHHHHhhcccc-ccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence 10 1344455555666666556666 69999999999888653 56666
Q ss_pred hhHHHHHHHhhhhhHHHhhh
Q 012495 157 GLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 157 ~ag~~lG~i~gg~~~~~l~~ 176 (462)
+...=+|..+|+.+.++.-.
T Consensus 376 tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 376 TFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666677777766655443
No 136
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.34 E-value=0.0016 Score=66.11 Aligned_cols=121 Identities=9% Similarity=0.011 Sum_probs=79.2
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|-++++.+.+...... ..++..+..++++||++||+.+........... ...... ++
T Consensus 269 ~g~s~~~~~~~~~~~~~-~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~------~~------------- 326 (405)
T TIGR00891 269 LGLSPHTVANIVVFSNI-GAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLI--IPVFAI------GA------------- 326 (405)
T ss_pred hCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHH--HHHHHh------CC-------------
Confidence 34335677777765554 457889999999999999998765544321111 111110 01
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
+.|...+........+....+ ..+++++|.++++++.|.+++....+++|..+|+.+.+.+.+
T Consensus 327 ---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 327 ---------NVAVLGLGLFFQQMLVQGIWG-ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred ---------chHHHHHHHHHHHHHHccchh-hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 223222222222333333445 478899999999999999999999999999999988887653
No 137
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.30 E-value=0.027 Score=59.54 Aligned_cols=122 Identities=11% Similarity=0.163 Sum_probs=72.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
++..+.+..... ...++..|++++++||+|+|+.+.......++..+.+..... ..++
T Consensus 265 ~~~~~~~~~~~~-i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------------- 322 (473)
T PRK10429 265 ADLFPYYLSYAG-AANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL-----AAPH---------------- 322 (473)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-----cCch----------------
Confidence 444555554333 345688899999999999999987666554443333322100 0111
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhh--hhh-----hhhhhhhHHHHHHHhhhhhHHHhhhh
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDE--AKR-----FYPLFGLGANVALIFSGRTVKYFSNL 177 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~q--akR-----~fgli~ag~~lG~i~gg~~~~~l~~~ 177 (462)
+.|...+.-+..++-...... ..|++++|+.|.+| ..| .|+..+....+|.-+|+.+.+.+-..
T Consensus 323 -----~~~~~~i~~~l~g~~~~~~~~-~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 323 -----NALLIVIAGILLNIGTALFWV-LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222333333333445 58999999988554 222 67888888888888888777765543
No 138
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.29 E-value=0.0051 Score=63.53 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=74.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
|.++++.+.+..... .+.++..+..++++||++||+.+...........++.... +.+ .
T Consensus 262 g~~~~~~~~~~~~~~-~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------------~ 320 (426)
T PRK12307 262 GFDTGVVSNLMTAAA-FGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI--------PQD------------N 320 (426)
T ss_pred CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--------ccc------------c
Confidence 433566666666544 3456788999999999999998776654443332222110 000 0
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
..+.....+.+. ..+....+ ..+.++.|.++++++.+.+|++...+++|..+|+.+.+.+.
T Consensus 321 --------~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 321 --------YLLLGACLFGLM-ATNVGVGG-LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred --------HHHHHHHHHHHH-HhcccHhH-HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 001111111111 11111123 47788999999999999999999999999999988887765
No 139
>PRK03699 putative transporter; Provisional
Probab=97.27 E-value=0.0093 Score=61.21 Aligned_cols=138 Identities=7% Similarity=-0.021 Sum_probs=82.0
Q ss_pred hHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 012495 5 ILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPL 84 (462)
Q Consensus 5 i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~ 84 (462)
...+++..-..-+.+..++.|-++++.+.+...... ...+..++.++++||++||+.+..........+.++..
T Consensus 217 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~-~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~----- 290 (394)
T PRK03699 217 YILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWM-AYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN----- 290 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHH-HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH-----
Confidence 334444444445555544445446677777665543 44678899999999999999877655443333222211
Q ss_pred ccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHH
Q 012495 85 SNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVAL 164 (462)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~ 164 (462)
.++ ..|..... ...+.......+ ...++..|..+ +++++..+.+...+++|.
T Consensus 291 ----~~~---------------------~~~~~~~~-~~~G~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~ 342 (394)
T PRK03699 291 ----TDD---------------------PSHLLYAI-LGLGFFSSAIYT-TIITLGSQQTK-VASPKLVNFILTCGTIGT 342 (394)
T ss_pred ----cCC---------------------chHHHHHH-HHHHHHHHHHHH-HHHHHHHHHcc-CCCHHHHHHHHHhhhHHH
Confidence 011 01111112 222333223445 36667777665 445677899989999999
Q ss_pred HhhhhhHHHhhh
Q 012495 165 IFSGRTVKYFSN 176 (462)
Q Consensus 165 i~gg~~~~~l~~ 176 (462)
.+|+.+.+.+.+
T Consensus 343 ~i~p~~~G~l~~ 354 (394)
T PRK03699 343 MLTFVVTSPIVA 354 (394)
T ss_pred HHHHHHHHHHHH
Confidence 999988887764
No 140
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.27 E-value=0.014 Score=59.99 Aligned_cols=113 Identities=14% Similarity=0.161 Sum_probs=67.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
+++.+.+..... .+.++..++.|+++||++||+.+..........+... .. .+
T Consensus 251 ~~~~g~~~~~~~-~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~---~~------~~----------------- 303 (393)
T PRK15011 251 EKLAGVMMGTAA-GLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM---LM------AH----------------- 303 (393)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HH------Hh-----------------
Confidence 455666655433 3445677999999999999997765443333222111 10 00
Q ss_pred hhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 108 PLAIMRIWSFCLFYVMA-ELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~-el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+.|......... -.++ ...+ ..+.+.+|..+ +++.+..++.+...++|..+|+.+.+.+.
T Consensus 304 -----~~~~~l~~~~l~~~~~g-~~~~-~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~ 364 (393)
T PRK15011 304 -----SPAILLGLQLLNAIYIG-ILGG-IGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVA 364 (393)
T ss_pred -----hHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222 2233 2333 35667788887 56888999998889999999988887654
No 141
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.21 E-value=0.0052 Score=63.49 Aligned_cols=126 Identities=9% Similarity=0.079 Sum_probs=81.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
.++..++..... ...++..++.++++||++||+.+..........++++++...+.....|+.
T Consensus 318 ~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 380 (481)
T TIGR00879 318 TDHAFLVSIIVG-AVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS---------------- 380 (481)
T ss_pred chHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc----------------
Confidence 344445544333 345678899999999999999988887777776666664332111100000
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.+......+....++....+ ..+.+++|.++++++.+..++.+...++|.++++.+...+.
T Consensus 381 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 381 ----SGNVAIVFILLFIAFFAMGWGP-VPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred ----hhHHHHHHHHHHHHHHHccccC-eehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111222333334433334 57889999999999999999999999999999998877654
No 142
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.17 E-value=0.017 Score=58.91 Aligned_cols=116 Identities=13% Similarity=0.073 Sum_probs=73.0
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|.+++..+++..... .+.++.....+++.||++||+++.............+. + +.
T Consensus 230 ~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~----~-----~~------------- 286 (381)
T PRK03633 230 QGMSDASIGFWMALLV-SAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML----S-----QA------------- 286 (381)
T ss_pred cCCCHHHHHHHHHHHH-HHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh----h-----hH-------------
Confidence 3443556677666443 45567778889999999999987665544433322110 0 00
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
..+. ...+ .+..+....+ ...+.++|..++++.....+..+.+.++|..+|+.+.+.+.
T Consensus 287 ---------~~~~--~~~l-~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~ 345 (381)
T PRK03633 287 ---------AMAP--ALFI-LGAAGFTLYP-VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM 345 (381)
T ss_pred ---------HHHH--HHHH-HHHHHHhHHH-HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 1111 1222223455 47788899999888888889888889999998888887664
No 143
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.16 E-value=0.077 Score=56.76 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhh
Q 012495 31 IPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLA 110 (462)
Q Consensus 31 l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~ 110 (462)
.+++-....+ ...+..+..|+++|++|||+.+......|....++.++. +
T Consensus 91 ~s~~~s~~~l-ga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a---------~-------------------- 140 (513)
T KOG0254|consen 91 QGLLTSILNL-GALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA---------P-------------------- 140 (513)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---------h--------------------
Confidence 4788776665 446899999999999999999999888887777766653 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhh
Q 012495 111 IMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFS 167 (462)
Q Consensus 111 ~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~g 167 (462)
+.|.+.+-+++.++=.... +.+.=-|.+|+.+.+.|+++-.......++|..+|
T Consensus 141 --~~~~l~~GR~l~G~g~G~~-~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~ 194 (513)
T KOG0254|consen 141 --SWYQLIVGRILTGLGVGGA-SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG 194 (513)
T ss_pred --hHHHHHHHHHHhccchhhh-hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH
Confidence 3344455556666543333 33577799999999999999999999999888877
No 144
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.15 E-value=0.0069 Score=63.00 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=87.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchh
Q 012495 29 EIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGP 108 (462)
Q Consensus 29 ~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (462)
+..+.+..... ..+++..|++++++||+|+|+.+..+....+..++++.++-.
T Consensus 260 ~~~~~~~~~~~-~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 312 (428)
T PF13347_consen 260 GLISIFMLIFF-VASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-------------------------- 312 (428)
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--------------------------
Confidence 44455555444 455789999999999999999999998888887776665310
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhh-------hhhhhhhhHHHHHHHhhhhhHHHhhhh
Q 012495 109 LAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAK-------RFYPLFGLGANVALIFSGRTVKYFSNL 177 (462)
Q Consensus 109 i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qak-------R~fgli~ag~~lG~i~gg~~~~~l~~~ 177 (462)
.+.|...+..+..++-...... ..|+..+|+.+.+|-| ..++..+....+|.-+++.+.+.+-+.
T Consensus 313 ---~~~~~~~i~~~l~gi~~~~~~~-~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 313 ---GSPWLVLILFILAGIGYGAFFV-IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred ---hhHHHHHHHHHHhHhhhccccc-ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1456677777777777666666 6999999999977654 467777777778888887777655544
No 145
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.15 E-value=0.027 Score=58.59 Aligned_cols=119 Identities=11% Similarity=0.058 Sum_probs=77.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchh
Q 012495 29 EIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGP 108 (462)
Q Consensus 29 ~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (462)
+....+...... ...+.....++++||+|||+++........+.+.++... +++.
T Consensus 251 ~~~g~~~~~~~i-~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~--------~~~~---------------- 305 (418)
T TIGR00889 251 KNASIWMSLSQF-SEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG--------DPEY---------------- 305 (418)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--------Ccch----------------
Confidence 344555554443 345677899999999999999888877666655444431 1100
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhh-hHHHHHHHhhhhhHHHhhh
Q 012495 109 LAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFG-LGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 109 i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~-ag~~lG~i~gg~~~~~l~~ 176 (462)
...|...+..++.++......+ ....+++|.++++++.+.+++.+ +..++|.++|+.+.+.+.+
T Consensus 306 ---~~~~~l~l~~~l~g~~~~~~~~-~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~ 370 (418)
T TIGR00889 306 ---FGYALLFLSMIVYGCAFDFFNI-SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVE 370 (418)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 0112222223333333223334 36678999999999999999997 6778899988888877654
No 146
>PRK09952 shikimate transporter; Provisional
Probab=97.14 E-value=0.024 Score=59.26 Aligned_cols=106 Identities=10% Similarity=-0.004 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY 121 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy 121 (462)
..++..+..|+++||++|||.+........+....+..... +.+ ..|......
T Consensus 298 ~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~---------------------~~~~~~~~~ 350 (438)
T PRK09952 298 LSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE------AQS---------------------IFWIVFFSI 350 (438)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH------cCC---------------------hHHHHHHHH
Confidence 34567889999999999999876554332222211211110 000 112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhh-HHHHHHHhhhhhHHHhh
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGL-GANVALIFSGRTVKYFS 175 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~a-g~~lG~i~gg~~~~~l~ 175 (462)
+..++......+ ..|++++|.++.|.+....++... +..+|..+++.+.+.+.
T Consensus 351 ~l~~~~~~~~~~-~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~ 404 (438)
T PRK09952 351 MLANIAHDMVVC-VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALV 404 (438)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334456 589999999999887777777543 44477777777776654
No 147
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.14 E-value=0.0054 Score=64.53 Aligned_cols=117 Identities=10% Similarity=0.015 Sum_probs=71.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhccc--CchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCc
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKL--SKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRF 105 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~--~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~ 105 (462)
+++...+..... ...++..|..++++||. ++++............. +.++.+. .
T Consensus 275 ~~~~g~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l---~~ll~~~----~---------------- 330 (455)
T TIGR00892 275 EYEAAFLLSIIG-FVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGL---THLLCAL----A---------------- 330 (455)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH---HHHHHHH----h----------------
Confidence 566677766544 34567888999999983 33433332221111111 1111100 0
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 106 LGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 106 ~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|...++.+..++......+ ..++.+.|.++++++.+.++++....++|.++|+.+.+.+.
T Consensus 331 ------~~~~~~~i~~~~~G~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~ 393 (455)
T TIGR00892 331 ------GDYTGLVIYCIFFGLSFGSVGA-LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV 393 (455)
T ss_pred ------chHHHHHHHHHHHHHHhchHHH-HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence 1234444444444444334445 57889999999999999999999999999999988877654
No 148
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.13 E-value=0.028 Score=57.85 Aligned_cols=51 Identities=18% Similarity=-0.035 Sum_probs=34.2
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHH
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFF 74 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~ 74 (462)
.|-++++.+++.......+.++..+..+++.||+|||+..........+..
T Consensus 240 ~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~ 290 (402)
T PRK11902 240 AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSN 290 (402)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 454467778776433333446778999999999999998765554444433
No 149
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.11 E-value=0.0047 Score=62.20 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=81.7
Q ss_pred HHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 012495 6 LFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLS 85 (462)
Q Consensus 6 ~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~ 85 (462)
.+.++..-..-+.+..+ .|-++++...+.........++..++.+++.||+|||+.+.......+..+.++.+.. ++
T Consensus 222 ~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-~~- 298 (356)
T TIGR00901 222 KLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLA-SN- 298 (356)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hc-
Confidence 34444444444444444 4544677777776444344467788999999999999987766666555555444321 00
Q ss_pred cccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHH
Q 012495 86 NAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGAN 161 (462)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~ 161 (462)
.|++ + .++ .+.|......+..+........ ...+++.|.+|+|++.|.+++.....+
T Consensus 299 --~~~~----~----~~~--------~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 299 --GHHD----G----ITF--------PHLLMLFLTITLEAVTGGLGTV-AFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred --Cccc----c----ccc--------chHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 0000 0 000 0234444444454555445556 599999999999999999999887665
No 150
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.10 E-value=0.01 Score=59.41 Aligned_cols=124 Identities=14% Similarity=0.065 Sum_probs=75.1
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchh--HHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhh
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQA--LFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNIL 101 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~--v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~ 101 (462)
.|.++++..++..... ...++..+..++++||++||+ +..... .......+.+..... .+ .++
T Consensus 246 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~----------- 310 (399)
T TIGR00893 246 RGLSILEAGFMASLPG-IVGFIGMILGGRLSDLLLRRGKSLVFARK-TAIIAGLVLSLLMFA-TN-YVN----------- 310 (399)
T ss_pred hcccHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHhhcccchhHHHH-HHHHHHHHHHHHHHH-hc-cch-----------
Confidence 3433556677766544 455788999999999999997 221111 111111112211100 00 000
Q ss_pred CCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 102 GPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 102 ~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
..|............. ...+ ..|++++|.+++|++.+.+++.+...++|..+|+.+.+.+.
T Consensus 311 -----------~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~ 371 (399)
T TIGR00893 311 -----------IPYAALALVALGFFGL-GAGA-IGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIA 371 (399)
T ss_pred -----------hHHHHHHHHHHHHhch-hhhh-HHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhc
Confidence 1222222223333322 3455 59999999999999999999999999999999998887664
No 151
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.07 E-value=0.0095 Score=62.52 Aligned_cols=107 Identities=12% Similarity=0.105 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHH
Q 012495 41 PMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120 (462)
Q Consensus 41 ~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~f 120 (462)
...++..++.++++||+|||+++........+..++++.... ++. ...|.....
T Consensus 317 ~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~------~~~--------------------~~~~~~~~~ 370 (479)
T PRK10077 317 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------TQA--------------------PGIVALLSM 370 (479)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh------cCc--------------------ccHHHHHHH
Confidence 345678899999999999999998888877777766664321 000 011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 121 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 121 yv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
......++....+ ..|.+++|.++.+++.+..++.++..++|.++++.....+
T Consensus 371 ~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 371 LFYVAAFAMSWGP-VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred HHHHHHHhccccc-hhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 1111112211224 5899999999999999999999999999999987665443
No 152
>PRK12382 putative transporter; Provisional
Probab=96.96 E-value=0.031 Score=57.05 Aligned_cols=103 Identities=8% Similarity=-0.013 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY 121 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy 121 (462)
..++..+..+++.||++|||.+..........++++.+. + +.|......
T Consensus 261 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---------~----------------------~~~~~~~~~ 309 (392)
T PRK12382 261 AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA---------P----------------------TAWVALAGA 309 (392)
T ss_pred HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc---------c----------------------cHHHHHHHH
Confidence 445677999999999999999877766655555443321 1 112222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
+..+.-.....+ ...+.+.|.+++|++.+.++..+...++|..+|+.+.+.+.+
T Consensus 310 ~l~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 310 ALTGAGCSLIFP-ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred HHHHHHHHhHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333445 467788899999999999999999999999999888876653
No 153
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=96.96 E-value=0.013 Score=61.57 Aligned_cols=126 Identities=10% Similarity=-0.011 Sum_probs=78.3
Q ss_pred eeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHh
Q 012495 19 LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLL 98 (462)
Q Consensus 19 l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~ 98 (462)
+..+..|-++++.+++..... ...++..++.+++.||++||+++........+...++.+. .+++
T Consensus 281 ~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~------- 345 (485)
T TIGR00711 281 YLQQVLGYTALQAGLHILPVG-LAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFT-------FTPD------- 345 (485)
T ss_pred HHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcc-------CCCC-------
Confidence 333334444677777776554 4556889999999999999998766655554444433311 1111
Q ss_pred hhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 99 NILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 99 ~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
.+.|......+..+.-...... .....+.+..++|++.+..++.+...++|..+|+.+.+.
T Consensus 346 -------------~~~~~~~~~~~l~g~g~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 346 -------------TPFLAIALPQFIRGFGMGCFFM-PLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122222223333333223333 255667778899999999999999999999987765543
No 154
>TIGR00898 2A0119 cation transport protein.
Probab=96.92 E-value=0.023 Score=60.25 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY 121 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy 121 (462)
..+....+.++++||+|||+.+.......++..++..+. ++ ...|......
T Consensus 367 ~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~---------~~--------------------~~~~~~~~~~ 417 (505)
T TIGR00898 367 VELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV---------PV--------------------DLYFLRTALA 417 (505)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc---------CC--------------------CchHHHHHHH
Confidence 445667778899999999999887776665555444331 11 0112222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHH
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVK 172 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~ 172 (462)
+..........+ ..+.+.+|.++.+.+.+..++.+..+.+|.++|+.+..
T Consensus 418 ~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 418 VLGKFGITSAFQ-MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHHHHHHHHHH-HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 444444444555 58899999999999999999999999999999887766
No 155
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.91 E-value=0.023 Score=58.03 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=81.7
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|.++++++.+..... .+.++..+..+++.||+|+|+++..+.......+.++++. +
T Consensus 235 ~g~s~~~~g~l~~~~~-~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---------~------------- 291 (382)
T TIGR00902 235 AGISASATGLLWGIGV-LAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI---------E------------- 291 (382)
T ss_pred CCCCHhHHHHHHHHHH-HHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH---------h-------------
Confidence 5655778888888655 4556788899999999999999888877777776655542 1
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhh-hHHHHHHHhhhhhHHHhhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFG-LGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~-ag~~lG~i~gg~~~~~l~~ 176 (462)
+.|.....-+.-++.-.+..+ ....+++|. +++++.+..++.+ .+.++|..+|+.+.+.+.+
T Consensus 292 ---------~~~~~~~~q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 292 ---------AFPLIFLLQILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223322222333333334445 378899998 8888888888876 4667888888877777653
No 156
>PRK03545 putative arabinose transporter; Provisional
Probab=96.90 E-value=0.018 Score=58.88 Aligned_cols=118 Identities=12% Similarity=0.078 Sum_probs=66.3
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|.++++.+++..... ..+++..+..++++||++|+++...... ...... .+... ++
T Consensus 236 ~g~s~~~~~~~~~~~~-~~~~~g~~~~g~l~dr~~~~~~~~~~~~-~~~~~~--~l~~~------~~------------- 292 (390)
T PRK03545 236 AGLSENFATLLLLLFG-GAGIIGSVLFSRLGNRHPSGFLLIAIAL-LLVCLL--LLLPA------AN------------- 292 (390)
T ss_pred cCCCccHHHHHHHHHH-HHHHHHHHHHHHHhhccchhHHHHHHHH-HHHHHH--HHHHH------hc-------------
Confidence 3434566777766544 4567888999999999998765432222 222111 11110 01
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+.|...+.-+..++....... ...+.+.|..+ |++.|.+++.+...++|..+|+.+.+.+.
T Consensus 293 ---------~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~ 353 (390)
T PRK03545 293 ---------SEWHLSVLSIFWGIAIMCIGL-AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS 353 (390)
T ss_pred ---------hHHHHHHHHHHHHHHHhcchH-HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222212222222111122 35566777765 67789999998888888888887777665
No 157
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.71 Score=46.88 Aligned_cols=258 Identities=15% Similarity=0.129 Sum_probs=130.6
Q ss_pred hhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCch
Q 012495 13 RDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQA 92 (462)
Q Consensus 13 r~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~ 92 (462)
..+||.+-++ .+..+.+.+.=.+.. =+++|.-.+|..|+|.+|.+... ......|..+.+. . +
T Consensus 36 ~~Ir~~~gls-----~s~aGlLTtLPll~f-g~~ap~a~~Lar~~g~er~l~~~-----Llli~~G~~iR~~---~-~-- 98 (395)
T COG2807 36 DEIRQDLGLS-----FSVAGLLTTLPLLAF-GLFAPAAPRLARRFGEERSLFLA-----LLLIAAGILIRSL---G-G-- 98 (395)
T ss_pred HHHHHHhccc-----HHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhhHHHHHHH-----HHHHHHHHHHHhc---c-c--
Confidence 3444444444 345677766443333 37889999999999999985433 3444445444211 0 0
Q ss_pred HHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHH
Q 012495 93 LADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVK 172 (462)
Q Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~ 172 (462)
.+.++.+. +..+. +-.+...+.=+.+-+-|+ |+.....|+.....++|..+++.++.
T Consensus 99 -------------~~~L~~gt--------~l~G~-gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lav 155 (395)
T COG2807 99 -------------LPLLFLGT--------LLAGA-GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAV 155 (395)
T ss_pred -------------HHHHHHHH--------HHHHh-hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhh
Confidence 00001111 11111 112333345566766666 66777889999999999998888877
Q ss_pred HhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc-cccccCCCCChHHHHHHHhhcHHHHHHH
Q 012495 173 YFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRS-KKKKEKPKMGTMESLKFLVSSRYIRDLA 251 (462)
Q Consensus 173 ~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~-~~~~~k~~~~~~~~l~~i~~s~yl~~l~ 251 (462)
.+++.. ++|...+ .+-.+.+.+.+..+ +.... .++.+ .+++++++. .++|||.-..+.
T Consensus 156 pla~~~-------~gW~~aL----~~WAl~allAl~~W--lPq~~-r~~~~~~~~~~~~~~-------~vw~~~~aW~vt 214 (395)
T COG2807 156 PLAQHS-------GGWRGAL----GFWALLALLALLIW--LPQAL-REQAASIATKLVSVR-------KVWRSPLAWQVT 214 (395)
T ss_pred HHHHhh-------ccHHHHH----HHHHHHHHHHHHHH--hhhcc-ccccccccccccccc-------ccccCchhHHHH
Confidence 665422 2444332 22222334443333 32211 01011 111111222 256788655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 012495 252 TLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGF 331 (462)
Q Consensus 252 ~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~l~~~~~f 331 (462)
++.=+.+.....+-.-...+..|+ ...+ +.-|......++.++...++.|.+.+|....+...+.-.. .+.+++
T Consensus 215 LfmGlqS~~~Y~~~~WLP~ili~~-G~sa---~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~--~~l~G~ 288 (395)
T COG2807 215 LFMGLQSLLYYIVIGWLPAILIDR-GLSA---AEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL--LMLVGL 288 (395)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHc-CCCH---HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH--HHHHHH
Confidence 444333222222222222233332 2222 3334445555666655677888888887777766555444 456777
Q ss_pred HHHHHh
Q 012495 332 FSLLLF 337 (462)
Q Consensus 332 f~l~~~ 337 (462)
+++.+.
T Consensus 289 ~G~~~~ 294 (395)
T COG2807 289 VGLLLA 294 (395)
T ss_pred HHHHHh
Confidence 777754
No 158
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.81 E-value=0.032 Score=57.04 Aligned_cols=127 Identities=10% Similarity=-0.094 Sum_probs=74.8
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|-++++++.+.........++.....+++.||+|++|++.......+....+ .+... .. ...+
T Consensus 238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~-~~~~~-~~-~~~~------------- 301 (390)
T TIGR02718 238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALL-WFAQA-AF-WLAP------------- 301 (390)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHH-Hc-ccCC-------------
Confidence 35557888888775443344455778999999999999887655443222111 11110 00 0000
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh-hhhhhhhhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTV-DEAKRFYPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~-~qakR~fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
..+......+..+........ .....+.+.+++ |++.+.+++.+...++|.++|+.+.+.+.+
T Consensus 302 ---------~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~ 365 (390)
T TIGR02718 302 ---------GIAVAWSCSAFGSLITGITSV-AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD 365 (390)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112222222223444 366666666665 888999999999999999999888876653
No 159
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.76 E-value=0.05 Score=57.80 Aligned_cols=124 Identities=15% Similarity=0.251 Sum_probs=85.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCch--hHHHHHHHHH--HHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQ--ALFYTVIVPF--IAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~--~v~~~~l~~f--~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.+++-.+..... .++++.+.+++++.||+|.| +.+...+... ...+.++|+.. . ..
T Consensus 316 ~~~l~~~~l~~~-i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~--~-----------------~~ 375 (477)
T PF11700_consen 316 TTQLIVFGLVVQ-IVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWP--S-----------------FF 375 (477)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhh--c-----------------cc
Confidence 455555555444 56678999999999999999 8877776655 22333344321 1 00
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLR 178 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~ 178 (462)
++ .+.|-..++=++.++.-.-..+ .--++.+++.|++|..++||+.+..+-.+.++|+.+.+...+.-
T Consensus 376 g~------~~~~~f~~~a~~~G~~~G~~qs-~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 376 GL------KSPWEFWVLAVLIGLFMGGIQS-ASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred Cc------ccHHHHHHHHHHHHHHhhhHHH-HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01 1445444444555555445566 48899999999999999999999999999999999998877543
No 160
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.74 E-value=0.085 Score=56.72 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=91.7
Q ss_pred ceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHH
Q 012495 17 DVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADK 96 (462)
Q Consensus 17 d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~ 96 (462)
+.++-+..|++++..+++..... ...++.+...+++.+|.++++++......++...+.+++. +
T Consensus 242 Pl~a~~~l~~~a~~yGll~a~~g-vGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~---------~------ 305 (524)
T PF05977_consen 242 PLFARDVLGGGASGYGLLLAAFG-VGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS---------P------ 305 (524)
T ss_pred hHHHHHHhCCcHHHHHHHHHHHH-HHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc---------h------
Confidence 33443445556888899988654 5667888999999999999999887777777666555542 1
Q ss_pred HhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 97 LLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
+.|.........+.......+ .+.+.+-..+|.+.+.|.++........+..+|+.+.+.+++
T Consensus 306 ----------------~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 306 ----------------SFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345444444444444445555 478889999999999999999998888888888877776653
No 161
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=96.71 E-value=0.0073 Score=59.92 Aligned_cols=131 Identities=12% Similarity=0.133 Sum_probs=82.1
Q ss_pred HHHHhhhccceeeecccCCC-cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 012495 8 NYTILRDTKDVLVVTAKGSS-AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSN 86 (462)
Q Consensus 8 ~y~ilr~~~d~l~~~~~g~~-a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~ 86 (462)
.++.....-+.+..+..|-+ +++..++........ .+..+..++++||+++++...............+.....
T Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 295 (352)
T PF07690_consen 221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVG-IIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF---- 295 (352)
T ss_dssp HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH----
T ss_pred HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34444444444433434433 456666666555433 567899999999999988776666555544433322110
Q ss_pred ccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHh
Q 012495 87 AIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIF 166 (462)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~ 166 (462)
.+ ...|... ..+..+.......+ ...+++.|..++|++.+.+++.+...++|..+
T Consensus 296 -------~~----------------~~~~~~~-~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i 350 (352)
T PF07690_consen 296 -------SS----------------SPVWLII-ALFLIGFGFGIVFP-ILFSLIQELVPPEYRGTAFGLFNSIGSLGGII 350 (352)
T ss_dssp -------HC----------------HHHHHHH-HHHHHHHHHHHHCH-HHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------hh----------------hHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0123333 33344444434556 59999999999999999999999999999997
Q ss_pred hh
Q 012495 167 SG 168 (462)
Q Consensus 167 gg 168 (462)
|+
T Consensus 351 gP 352 (352)
T PF07690_consen 351 GP 352 (352)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 162
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=96.70 E-value=0.09 Score=53.97 Aligned_cols=118 Identities=9% Similarity=-0.042 Sum_probs=69.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
+++..+...... ...++..+..++++||+++|+.............++++.... .+++
T Consensus 250 ~~~~g~~~~~~~-~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~---------------- 307 (406)
T PRK15402 250 SYEYGLLQVPVF-GALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATV-----ISSH---------------- 307 (406)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-----cccc----------------
Confidence 555666555333 344567899999999999999887766655555544443210 0000
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
+.|...+..+..+.-.....+ ..+....+..+ +++.|..+..+....+|..+|+.+.+.+
T Consensus 308 -----~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 308 -----AYLWLTAGLSLYAFGIGLANA-GLYRLTLFSSD-VSKGTVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred -----cHHHHHHHHHHHHHHHHHHhh-hHHHHHhhhcc-ccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111111222222222233 24455555544 8889999999999999998888877764
No 163
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.66 E-value=0.079 Score=55.54 Aligned_cols=264 Identities=16% Similarity=0.183 Sum_probs=120.5
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccC---chhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhh
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLS---KQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNI 100 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~---r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~ 100 (462)
+|-++.++..+..+..+|- .+=|+||-++|.++ +||--+..+......-....+.+.|..+ ++ ..
T Consensus 20 l~ls~~~~~~~~~~~~lPw--~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~---~s---~~---- 87 (433)
T PF03092_consen 20 LGLSPAQLQRLSSLASLPW--SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE---SS---AA---- 87 (433)
T ss_pred cCCCHHHHHHHHHHHhCch--HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc---ch---hh----
Confidence 3333677888888888888 48999999999975 3333333333333322223333332211 00 00
Q ss_pred hCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhcc
Q 012495 101 LGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKN 180 (462)
Q Consensus 101 ~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~ 180 (462)
....-.+....-|...++-....++- . .+- .++++.+.-..+.....+|.++|..+.+.+.+.
T Consensus 88 --------~~~~~l~la~~g~a~~DV~aDa~vvE-~----~~~-~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~--- 150 (433)
T PF03092_consen 88 --------IAVVLLFLASFGYAFADVAADALVVE-L----ARR-EPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS--- 150 (433)
T ss_pred --------hHHHHHHHHHHHHHHHHHhhhHHHHH-H----hhc-CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---
Confidence 00011233344445555554444442 1 111 233356677777777778888777776665432
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccc--ccc-CCC--C---ChHHHHHHHhhcHHHHHHHH
Q 012495 181 LGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKK--KKE-KPK--M---GTMESLKFLVSSRYIRDLAT 252 (462)
Q Consensus 181 ~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~--~~~-k~~--~---~~~~~l~~i~~s~yl~~l~~ 252 (462)
.+|.. .+. . ...+ .....+....+..+....|+.+.. +++ .++ . .....++..++.|-+....+
T Consensus 151 ~~~~~-~f~--i--~~~~---~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 222 (433)
T PF03092_consen 151 FGPQG-VFL--I--SAAL---PLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPIL 222 (433)
T ss_pred CCCeE-Eeh--H--HHHH---HHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22211 110 0 0001 111111111122221111111100 011 011 1 12344556666776555444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHH
Q 012495 253 -LVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVL 324 (462)
Q Consensus 253 -~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~ 324 (462)
..++++.....-+........+.-..|+=-..|+|......++.+++-..+.++..++..||.....+.++.
T Consensus 223 ~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~ 295 (433)
T PF03092_consen 223 FFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVS 295 (433)
T ss_pred HHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444444433322221111111111111112256666664444455555677888999999999998888753
No 164
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=96.66 E-value=0.07 Score=55.05 Aligned_cols=43 Identities=7% Similarity=0.012 Sum_probs=37.3
Q ss_pred HHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhh
Q 012495 135 LFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNL 177 (462)
Q Consensus 135 lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~ 177 (462)
...+.++|..+++++.|.+++.+...++|..+|+.+.+.+.+.
T Consensus 317 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 317 ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 3578899999999999999999999999999888887776543
No 165
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.64 E-value=0.1 Score=53.63 Aligned_cols=122 Identities=11% Similarity=0.012 Sum_probs=71.3
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHH-HHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYT-VIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILG 102 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~-~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~ 102 (462)
.|-++++..++..... .+..+..+..|+++||++||+.... ......+....+.+ .|.. .+
T Consensus 252 ~g~s~~~~~~~~~~~~-~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~--~~~~--~~------------- 313 (402)
T TIGR00897 252 LGFSTSEWLQIWGTFF-FTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY--IPQH--FG------------- 313 (402)
T ss_pred cCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH--HHHc--cC-------------
Confidence 4433455555555444 4557899999999999999886532 11112111111111 1100 00
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 103 PRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 103 ~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|...++.+..+.......+ .++.+.|. +++++.+.+++.+.+.++|..+|+.+.+.+.
T Consensus 314 ---------~~~~~~~~~~~~~G~~~~~~~~--~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~ 374 (402)
T TIGR00897 314 ---------HSFAVALIIAIALGIFLAGYVP--LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFI 374 (402)
T ss_pred ---------CcHHHHHHHHHHHHHHHHHHHH--HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0233344444445544433333 34566675 4578999999999999999999998887664
No 166
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=96.61 E-value=0.021 Score=57.05 Aligned_cols=131 Identities=16% Similarity=0.061 Sum_probs=73.9
Q ss_pred ceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHH
Q 012495 17 DVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADK 96 (462)
Q Consensus 17 d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~ 96 (462)
+....+..|-++++.+++...... ..++..++.+++.||..+++.................... .++.
T Consensus 240 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----- 307 (379)
T TIGR00881 240 PLYLTQEKGFSKEKASWAFTLYEL-GGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW------LNPA----- 307 (379)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH-HcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh------cCcc-----
Confidence 333334344445667777765554 4467889999999986443322222222221111111110 0111
Q ss_pred HhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 97 LLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|...+.....+........ ..+.+++|..++|++.+.+++.+...++|..+|+.+.+.+.
T Consensus 308 ---------------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 370 (379)
T TIGR00881 308 ---------------ANPLMDLICLFALGFLVYGPQM-LIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA 370 (379)
T ss_pred ---------------hhHHHHHHHHHHHHHHHhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 0112222222233333323334 47889999999999999999999999999998887776654
No 167
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.60 E-value=0.76 Score=50.05 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=37.7
Q ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHH
Q 012495 22 TAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFF 74 (462)
Q Consensus 22 ~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~ 74 (462)
+..|+ .+...|+-....+ ++-+..|++|+|+|.+|||.++........+..
T Consensus 72 ~diG~-~~~~~w~~~~~~l-~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~ 122 (599)
T PF06609_consen 72 ADIGG-SDNWSWFSTAWTL-ASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGS 122 (599)
T ss_pred HhcCC-CccchHHHHHHHH-HHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHH
Confidence 33554 5777888776654 556888999999999999999877765444443
No 168
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.74 Score=49.35 Aligned_cols=118 Identities=12% Similarity=0.064 Sum_probs=74.7
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
++.+.++..|....... +.++..|+.+.+.||+|.|++....-......+++-.+.
T Consensus 76 f~~s~~~~~~i~sl~~~-~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~----------------------- 131 (509)
T KOG2504|consen 76 FGSSSSQIAWIGSLLLG-VYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA----------------------- 131 (509)
T ss_pred hCCCccHHHHHHHHHHH-HHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 44445668888886654 446889999999999999999776665555554433332
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWG-SVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~-~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|...+.|=..+-.| +++.. =.-..++..|. +.|.+.-|+..+|.++|.++=+.+.+++-
T Consensus 132 --------~~i~~l~lt~gvi~G~G~~~~~~-paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 132 --------TSLWQLYLTFGVIGGLGLGLIYL-PAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred --------hhHHHHHHHHHHHhhccchhhhc-chhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 14555544443333222 12222 13334444444 66777889999999999887777776654
No 169
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.58 E-value=0.082 Score=55.00 Aligned_cols=125 Identities=14% Similarity=-0.023 Sum_probs=65.8
Q ss_pred HHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012495 9 YTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAI 88 (462)
Q Consensus 9 y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~ 88 (462)
++..-.--+.+..+..|-+.++............ .+..++.|+++||++||+.+.......+.....+.... + .
T Consensus 259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~-~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~----~ 332 (432)
T PRK10406 259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVF-MLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL-Q----N 332 (432)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-H----c
Confidence 4434443444443334433455566555444333 56778899999999999976544332222111111100 0 0
Q ss_pred CCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 89 HPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
++ +.+....+............+ ..|.+.+|.+++|.|.+.+|+.+..+++
T Consensus 333 ~~----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~fp~~~r~t~~g~~~~~g~~ 383 (432)
T PRK10406 333 VS----------------------SPYAAFGLVMCALLIVSFYTS-ISGILKAEMFPAQVRALGVGLSYAVANA 383 (432)
T ss_pred CC----------------------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCccchhhhHHHHHHHH
Confidence 00 011111111111111112334 4889999999999999999999876654
No 170
>PRK15075 citrate-proton symporter; Provisional
Probab=96.48 E-value=0.12 Score=53.83 Aligned_cols=138 Identities=9% Similarity=0.046 Sum_probs=71.5
Q ss_pred HHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH-HHHHHHHHHhhccc
Q 012495 8 NYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIA-FFGAFGFLLYPLSN 86 (462)
Q Consensus 8 ~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~-~~~lf~~~l~p~~~ 86 (462)
.++.+....+.+..+..|-++++..++..... ...++..+..|+++||++||+++......... .+..+.. ..
T Consensus 253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-~~---- 326 (434)
T PRK15075 253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVG-VSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW-LV---- 326 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HH----
Confidence 34444444444444333433455565555443 34567889999999999999987654322211 1111111 00
Q ss_pred ccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhh-HHHHHHH
Q 012495 87 AIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGL-GANVALI 165 (462)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~a-g~~lG~i 165 (462)
.+++ .+......++.........+ ..|.+..|..+.+++.+..++... +..++..
T Consensus 327 -~~~~----------------------~~~~~~~~~~~~~~~g~~~~-~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~ 382 (434)
T PRK15075 327 -AAPS----------------------FARMLAVELWLSFLYGSYNG-AMVVALTEVMPAEVRTAGFSLAYSLATAIFGG 382 (434)
T ss_pred -cCCc----------------------hHHHHHHHHHHHHHHHHHHh-hHHHHHHHHCCCCccchheeHHHHHHHHHHhh
Confidence 0111 01111111122222223334 477899999999999999888643 3334345
Q ss_pred hhhhhHHHhh
Q 012495 166 FSGRTVKYFS 175 (462)
Q Consensus 166 ~gg~~~~~l~ 175 (462)
+++.+.+.+.
T Consensus 383 ~~p~~~g~i~ 392 (434)
T PRK15075 383 FTPAISTWLI 392 (434)
T ss_pred hHHHHHHHHH
Confidence 5665555443
No 171
>PRK11663 regulatory protein UhpC; Provisional
Probab=96.33 E-value=0.1 Score=54.31 Aligned_cols=40 Identities=18% Similarity=0.054 Sum_probs=35.4
Q ss_pred HHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 136 FWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 136 fwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+..++|.++++++.+..|+.+...++|..+|+.+.+.+.
T Consensus 358 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~ 397 (434)
T PRK11663 358 IGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL 397 (434)
T ss_pred HHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5667899999999999999999999999999988877654
No 172
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=96.33 E-value=0.15 Score=53.33 Aligned_cols=40 Identities=15% Similarity=-0.009 Sum_probs=30.6
Q ss_pred HHHHHHhhCChhhhhhhhhhhhhHHHHHHHh-hhhhHHHhh
Q 012495 136 FWGFANQITTVDEAKRFYPLFGLGANVALIF-SGRTVKYFS 175 (462)
Q Consensus 136 fwa~~ndi~~~~qakR~fgli~ag~~lG~i~-gg~~~~~l~ 175 (462)
...+++|.++++++.+..++.+..+++|..+ |+.+.+.+.
T Consensus 368 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~ 408 (452)
T PRK11273 368 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 408 (452)
T ss_pred HHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3456789999999999999999888887654 555555543
No 173
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=96.29 E-value=0.03 Score=57.97 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 135 LFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 135 lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
..|...+|.+++|++.+.+|+.+..+++|.++|+.+.+...
T Consensus 353 ~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~ 393 (412)
T TIGR02332 353 IFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK 393 (412)
T ss_pred HHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence 47888889999999999999999999999999988776543
No 174
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.28 E-value=0.039 Score=64.63 Aligned_cols=124 Identities=10% Similarity=-0.013 Sum_probs=82.8
Q ss_pred eeeecccCCCcc-hhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHH
Q 012495 18 VLVVTAKGSSAE-IIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADK 96 (462)
Q Consensus 18 ~l~~~~~g~~a~-~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~ 96 (462)
.+..+..|.++. ..+++.+... ...++..++.++++||.++++++.+....+++..+++++.
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~-ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------- 319 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASA-IGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA---------------- 319 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh----------------
Confidence 333333443345 6677777555 4557788999999999999988776655555544433321
Q ss_pred HhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 97 LLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
.+.|...+..+..++....... ..++++.+.++.+++.+.++..+...++|.++++.+...+
T Consensus 320 ---------------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 320 ---------------PSLASVLVLFFLFGFSAGLFIV-PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred ---------------hhHHHHHHHHHHHHHHHHHhhH-HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1233333444444554444445 4889999999999999999999999999887776655544
No 175
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.27 E-value=0.36 Score=51.55 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=72.3
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHH
Q 012495 47 MLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAEL 126 (462)
Q Consensus 47 ~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el 126 (462)
...|+|+.+|.+.++.+.+.....++.|+..+..- +..+++ +. .+.|.....|+..++
T Consensus 337 ~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~----~~~~~~------------~~------vs~~~~~~~~~l~~~ 394 (500)
T PRK09584 337 AAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGA----KFANDA------------GI------VSVNWLIASYGLQSI 394 (500)
T ss_pred HHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHH----HhcCCC------------Cc------cCHHHHHHHHHHHHH
Confidence 34457777777777777777777777776655421 000000 00 234445566666666
Q ss_pred HHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 127 WGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 127 ~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
-...+.+ .--+++.+..|++.+.|.+|....+..+|..++|.+....
T Consensus 395 ge~~~~p-~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~ 441 (500)
T PRK09584 395 GELMISG-LGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLM 441 (500)
T ss_pred HHHHHhH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6555556 5888999999999999999999999999999999887654
No 176
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.25 E-value=0.081 Score=53.18 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=78.1
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccc-CchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKL-SKQALFYTVIVPFIAFFGAFGFLLYPLS 85 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~-~r~~v~~~~l~~f~~~~~lf~~~l~p~~ 85 (462)
..|+..-..-+.+..+ .|.++++.+.+..... ...++..+..++++||+ +||+.........+....++.+.
T Consensus 211 ~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~-~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~----- 283 (355)
T TIGR00896 211 GLYYSLIGWLPAILIS-HGASAATAGSLLALMQ-LAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA----- 283 (355)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH-HHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh-----
Confidence 3444333333334333 3444666777777655 45578899999999999 45555555444444444333321
Q ss_pred cccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhhhhhhhhhhhhHHHHHH
Q 012495 86 NAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQIT-TVDEAKRFYPLFGLGANVAL 164 (462)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~-~~~qakR~fgli~ag~~lG~ 164 (462)
++ + ..|. +-+..++......+ ..++.+.|.. +++++.+.+++....+++|.
T Consensus 284 ----~~---~-----------------~~~~---~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (355)
T TIGR00896 284 ----PM---H-----------------GLWA---WALVLGLGQGGAFP-LALTLIGLRSRQAAQAAALSAMAQSIGYLLA 335 (355)
T ss_pred ----hh---h-----------------HHHH---HHHHHHHhhhhHhH-HHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 10 0 0111 11222333334455 4667766554 56778899999998888888
Q ss_pred HhhhhhHHHhhh
Q 012495 165 IFSGRTVKYFSN 176 (462)
Q Consensus 165 i~gg~~~~~l~~ 176 (462)
.+|+.+.+.+.+
T Consensus 336 ~~gp~~~G~l~~ 347 (355)
T TIGR00896 336 ALGPLFVGVLHD 347 (355)
T ss_pred HHHHHHHHHHHH
Confidence 888877776653
No 177
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=96.17 E-value=0.082 Score=56.20 Aligned_cols=117 Identities=7% Similarity=-0.101 Sum_probs=74.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
|.++.+.+.......+ ...+..++.|++.||+|||++...........+.++...- .++
T Consensus 291 g~s~~~ag~~~~~~~~-~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~------~~~-------------- 349 (495)
T PRK14995 291 GLSPLEAGMFMLPVMV-ASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD------FST-------------- 349 (495)
T ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc------CCC--------------
Confidence 4346666766665544 4457889999999999999987666555544444333210 011
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhH
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTV 171 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~ 171 (462)
+.|......+..++-.....+ .....+.+..++||+.+..++.+...++|..+|..+.
T Consensus 350 --------~~~~~~~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 350 --------QQWQAWGLMALLGFSAASALL-ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF 407 (495)
T ss_pred --------chHHHHHHHHHHHHhHHHHHH-HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 112222223333433334444 3777888889999999999999999999988765444
No 178
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.11 E-value=0.41 Score=50.96 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcccCchhH-------HHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhH
Q 012495 44 IGFMLLYTKLADKLSKQAL-------FYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWS 116 (462)
Q Consensus 44 ~~~~~~~~~L~~r~~r~~v-------~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~ 116 (462)
++++|+.+++.||+++|+. +...+...+..++..+..-....+ .+++ .+.|.
T Consensus 323 ii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~-~~~~--------------------~s~~~ 381 (489)
T PRK10207 323 VVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFAD-AQGL--------------------TSPWF 381 (489)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCc--------------------cCHHH
Confidence 5789999999999998863 333333333333322211000000 0000 12343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 117 FCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 117 ~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
....|++.++-.....+ .-.+++.+..|+|++....+......++|..+|+.+.....
T Consensus 382 ~i~~~~l~g~Ge~~~~~-~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 382 IVLVYLFQSLGELFISA-LGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556655554433344 57889999999999999999999999999999988887654
No 179
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.08 E-value=0.064 Score=54.92 Aligned_cols=116 Identities=9% Similarity=0.142 Sum_probs=70.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
.+..+++...... ...+..+..+++.||+|||+.+.+....+...+.+++.. +
T Consensus 253 ~~~~g~~~~~~~i-~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~---------~----------------- 305 (396)
T TIGR00882 253 TRVFGYVTTMGEL-LNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA---------T----------------- 305 (396)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc---------C-----------------
Confidence 4456666665443 445677889999999999999876666555544433321 1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhh-hhhHHHHHHHhhhhhHHHhhh
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPL-FGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgl-i~ag~~lG~i~gg~~~~~l~~ 176 (462)
+.|...+..+..++....... ....++++..+.+.+...++. .+...++|.++++.+.+++.+
T Consensus 306 -----~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 306 -----TALEVVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred -----ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 223333333333333323333 355667777776665555655 567788888888877776653
No 180
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.04 E-value=2.4 Score=44.43 Aligned_cols=143 Identities=11% Similarity=0.071 Sum_probs=81.9
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhH
Q 012495 236 ESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGV 315 (462)
Q Consensus 236 ~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~ 315 (462)
++++.-+|+|-.+.-..+.++|--+-. ++.+.-.+.+.+ .-++ ..+|.+.+.-.+..+.-.++.+++.+|+|..+
T Consensus 250 ~~w~~Y~~q~vflas~alalLY~TVLs-f~~lmt~yl~~~-G~s~---~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr 324 (432)
T PF06963_consen 250 RGWRTYFRQPVFLASFALALLYFTVLS-FGGLMTAYLKSQ-GYSP---SVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVR 324 (432)
T ss_pred ccHHHHHhCHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHC-CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 445566788887777777777765554 377777777766 4444 34444444433334545678899999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHH-HHHHHHHHHHHHHHhhhhhccccchhhccccCCchhhhcc
Q 012495 316 AAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLL-AAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKG 394 (462)
Q Consensus 316 ~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~-~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k~ 394 (462)
+-++.-..=.. .+......++.... +. +.. ...+++ .-+++|..=++..-...+++-.-+|+++|...
T Consensus 325 ~G~~~l~~q~~-~L~~~v~~~~~~~~-~~-------~~~s~~~l~~--gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v 393 (432)
T PF06963_consen 325 AGLWSLWWQWV-CLALCVVSFWAPGS-PF-------SSISAYLLLG--GIALSRIGLWSFDLAVTQIMQENVPESERGAV 393 (432)
T ss_pred hHHHHHHHHHH-HHHHHHHHHhcCCC-Cc-------hhhHHHHHHH--HHHHHHHHHHhhhHHHHHhhcccCCHHHhhHH
Confidence 88766552221 12222222221111 10 111 112222 35677877777655566666666888887553
No 181
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=95.93 E-value=0.37 Score=48.50 Aligned_cols=120 Identities=15% Similarity=0.004 Sum_probs=71.5
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|.++++.+++..... ...++..++.++++||++||+..........+...++.....+ +.+
T Consensus 237 ~g~~~~~~g~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------ 298 (385)
T TIGR00710 237 MGVSPSVFGLLFALNI-IAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL-----GLG------------ 298 (385)
T ss_pred cCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh-----ccc------------
Confidence 4444677777777555 3556889999999999999998877766665555544432110 000
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHH
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVK 172 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~ 172 (462)
..+.........+.-.....+ ..++.+.|..+ +++.+..++.+.....+..+++...+
T Consensus 299 ---------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 299 ---------SWAMIIGPMMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222233332334445 57888889876 67788888887766543334443333
No 182
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.88 E-value=0.2 Score=51.15 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=67.5
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|.++++.+.+..... ...+...+..+++.||+++++++..+.......+++.+.. +
T Consensus 235 ~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~---------~------------- 291 (382)
T PRK11128 235 AGYSASTIGYLWSLGV-VAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST---------T------------- 291 (382)
T ss_pred CCCCHhHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh---------h-------------
Confidence 4544667888877554 4666777899999999999999877766655554433321 0
Q ss_pred CcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCChhhhhhhhhhhh-hHHHHHHHhhhhhHHHhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAEL-WGSVVISVLFWGFANQITTVDEAKRFYPLFG-LGANVALIFSGRTVKYFS 175 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el-~~~~~~s~lfwa~~ndi~~~~qakR~fgli~-ag~~lG~i~gg~~~~~l~ 175 (462)
+.|...+.-+..+. ++ ...+ ....+.++.. +++..|..+..+ ...++|..+|+.+.+.+.
T Consensus 292 ---------~~~~~~~~~~l~g~~~~-~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 292 ---------ALPWLIVIQILHCGTFT-VCHL-AAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred ---------hHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211122222 22 2223 3556666764 444467788776 444556566666655543
No 183
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=95.78 E-value=0.084 Score=55.91 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=29.5
Q ss_pred HHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhH
Q 012495 135 LFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTV 171 (462)
Q Consensus 135 lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~ 171 (462)
..|+.++++. ++++...+|+.++++++|.++++.+.
T Consensus 368 ~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~ 403 (476)
T PLN00028 368 ATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLF 403 (476)
T ss_pred hhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHH
Confidence 4778888764 57888999999999999999888664
No 184
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=95.68 E-value=0.068 Score=62.81 Aligned_cols=152 Identities=10% Similarity=0.014 Sum_probs=94.1
Q ss_pred HhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 012495 11 ILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHP 90 (462)
Q Consensus 11 ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~ 90 (462)
.+-..-+.+..+..|.+++..+++.....+ ..++.....+++++|.++++.+........+..+..++.. .....+
T Consensus 243 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~-g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~ 318 (1140)
T PRK06814 243 VVLSQLPLLAKETLGGDENVATLFLAVFSV-GVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFAS---SSVPAE 318 (1140)
T ss_pred HHHHHhHHHHHHHcCCchHHHHHHHHHHHH-HHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcc---cccccc
Confidence 333344455555455557778888776654 4468899999999988877765544443333332222210 000000
Q ss_pred chHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhh
Q 012495 91 QALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRT 170 (462)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~ 170 (462)
..... .........+.|...+..+..++.+..... ...+.+.+.++++++.|.++..+...++|..+|+.+
T Consensus 319 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~ 389 (1140)
T PRK06814 319 PAQLK--------SILVFLSKRHGWRILIDLFGLAAAGGLYIV-PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTII 389 (1140)
T ss_pred ccccc--------chhhhhcccccHHHHHHHHHHHHHHHHhHH-HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHH
Confidence 00000 000000002557666767777777766666 489999999999999999999999999999999888
Q ss_pred HHHhh
Q 012495 171 VKYFS 175 (462)
Q Consensus 171 ~~~l~ 175 (462)
.+.+.
T Consensus 390 ~g~l~ 394 (1140)
T PRK06814 390 LALLQ 394 (1140)
T ss_pred HHHHH
Confidence 77664
No 185
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=95.59 E-value=0.22 Score=52.68 Aligned_cols=131 Identities=9% Similarity=-0.087 Sum_probs=85.9
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH-hhcccccCCchHHHHHhhhh
Q 012495 23 AKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL-YPLSNAIHPQALADKLLNIL 101 (462)
Q Consensus 23 ~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l-~p~~~~~~~~~~~~~~~~~~ 101 (462)
..|.+++.++.+..... .+.++....++++.+|++.|+++.++....+........+. ..+...-.|+
T Consensus 282 ~lG~s~~~~G~~~~~~~-v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~---------- 350 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGN-LGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISD---------- 350 (468)
T ss_pred cCCCCcchhhhHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCC----------
Confidence 35666888999888655 56688999999999999999998877766555443221110 0000000000
Q ss_pred CCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhh
Q 012495 102 GPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNL 177 (462)
Q Consensus 102 ~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~ 177 (462)
.|.....-+..++...+... -...++.+.+++++....|++.....++|..+|+.+.+.+.+.
T Consensus 351 ------------~~~~~~~~~l~~~~~g~~~~-~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 351 ------------EVFVLGDSIIAEVLAQLKFM-PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred ------------eeeeeehhHHHHHHHHHHHc-cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01000111223333333334 3688999999999999999999999999999999888877643
No 186
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.38 Score=50.27 Aligned_cols=126 Identities=12% Similarity=0.101 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhh
Q 012495 32 PFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAI 111 (462)
Q Consensus 32 ~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 111 (462)
.-... .+.+..+.--..+|++.||+|||++.-..+....++=.+.++ ....|+. ..
T Consensus 87 ~~Vn~-~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~-----s~~~~~~-----------~~------- 142 (538)
T KOG0252|consen 87 ALVNA-AALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGL-----SVGTTSP-----------LG------- 142 (538)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhcc-----CCCCCCC-----------cc-------
Confidence 34444 344566666688999999999999988777666554332322 1222221 01
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCC
Q 012495 112 MRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGP 183 (462)
Q Consensus 112 ~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp 183 (462)
-.|....++.|.++==-.=.+ +==..++|.-+.+.|..+.+.+-+-.+.|.+.|+.++..++...+...+
T Consensus 143 -~m~~L~~~R~~LGiGIGGDYP-lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 143 -VMMTLCFFRFLLGIGIGGDYP-LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred -hhhHHHHHHHHhhccccCCCc-chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 123444455555441001112 1223456778888888899999999999999999888777755554333
No 187
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=95.52 E-value=0.026 Score=56.68 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=68.5
Q ss_pred eeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHh
Q 012495 19 LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLL 98 (462)
Q Consensus 19 l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~ 98 (462)
+..+..|-++++...+...... ..++..+..++++||++||+..............++.+.. +++
T Consensus 251 ~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~------- 315 (366)
T TIGR00886 251 FFKDQFGLSKVTAGAYASLGGL-LGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL-------VSP------- 315 (366)
T ss_pred HHHHHcCCcHHHHHHHHHHHHH-HHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC-------CCc-------
Confidence 3333344335667766665543 4467889999999999999877666554444333332211 110
Q ss_pred hhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHH
Q 012495 99 NILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVA 163 (462)
Q Consensus 99 ~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG 163 (462)
.+.|......+..........+ ..|+.++|+.+ +++.+.+|+++..+++|
T Consensus 316 -------------~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 316 -------------LSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred -------------chHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 0122222222233333224456 48899999987 79999999999888876
No 188
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=95.37 E-value=0.87 Score=46.34 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=36.2
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHH
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAF 77 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf 77 (462)
.|-++++.+.+.+.... +.++..+..+++.||+|||++.......+.....++
T Consensus 234 ~g~~~~~~~~~~~~~~~-~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 286 (392)
T PRK10473 234 MGFSRGEYAIIMALTAG-VSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITL 286 (392)
T ss_pred cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 34335566776665543 446788999999999999998877666555444433
No 189
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=95.29 E-value=0.27 Score=51.28 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=30.6
Q ss_pred HHHHHHhhCChhhhhhhhhhhhhHHHHHH-HhhhhhHHHhh
Q 012495 136 FWGFANQITTVDEAKRFYPLFGLGANVAL-IFSGRTVKYFS 175 (462)
Q Consensus 136 fwa~~ndi~~~~qakR~fgli~ag~~lG~-i~gg~~~~~l~ 175 (462)
....+.|.++++++.+..|+.+...++|. .+|+.+.+.+.
T Consensus 366 ~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~ 406 (438)
T TIGR00712 366 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 406 (438)
T ss_pred HHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH
Confidence 34567899999999999999988887764 56666665544
No 190
>PRK10054 putative transporter; Provisional
Probab=95.15 E-value=0.22 Score=51.28 Aligned_cols=113 Identities=5% Similarity=0.007 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhh
Q 012495 30 IIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPL 109 (462)
Q Consensus 30 ~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i 109 (462)
..+....... .......+..+++.||.++|+.+..........+.++.+. .+
T Consensus 245 ~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~------------------ 296 (395)
T PRK10054 245 VVAVVLPVNA-AMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS---------GN------------------ 296 (395)
T ss_pred HHHHHHHhhh-hheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc---------ch------------------
Confidence 3454544333 2333455778999999999998776665555444433321 00
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 110 AIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 110 ~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
+.|...+.-+..+.-.....+ ..+++++|..+++.+.+.++..+ .+.+|..+|+...+.+.
T Consensus 297 ---~~~~~~~~~~~~~~g~~~~~p-~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~ 357 (395)
T PRK10054 297 ---SLLLWGMSAAVFTVGEIIYAP-GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL 357 (395)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH
Confidence 112111111111111112233 36789999999999899988654 45567777776666554
No 191
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=94.96 E-value=1.8 Score=45.91 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 113 RIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 113 ~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
+.|-..+.|+..++=.....+ ..+++++|..|++.+.|.+++...+..+|..+|+.+....
T Consensus 380 s~~~~i~~~~~~~~ge~~~~p-~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 380 SPWFMVLIYLFQTLGELMISP-LGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445455555555554444556 6999999999999999999999999999999998887654
No 192
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=94.94 E-value=0.18 Score=53.68 Aligned_cols=104 Identities=7% Similarity=0.009 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHH
Q 012495 44 IGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVM 123 (462)
Q Consensus 44 ~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~ 123 (462)
++...+.++++||+|||+++.......++...+.++...+ .+. ...+....++
T Consensus 349 i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~-----~~~--------------------~~~~~~~~~~-- 401 (502)
T TIGR00887 349 VPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH-----LST--------------------HGFLAIYVLA-- 401 (502)
T ss_pred HHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh-----cch--------------------hHHHHHHHHH--
Confidence 3455677899999999998876665555554444432100 000 0011111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 124 AELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 124 ~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
...++....+ ..|.+.+|+++.+.|.+.+++....+.+|.++++.+...+.
T Consensus 402 ~~~~~~~~~~-~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~ 452 (502)
T TIGR00887 402 QFFANFGPNA-TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLA 452 (502)
T ss_pred HHHHhcCCCc-hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Confidence 1112212234 58899999999999999999999999999999998887654
No 193
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=94.85 E-value=0.26 Score=51.72 Aligned_cols=143 Identities=12% Similarity=-0.023 Sum_probs=72.6
Q ss_pred hhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHH---HHHHHHHHHHHHH
Q 012495 4 CILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVI---VPFIAFFGAFGFL 80 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l---~~f~~~~~lf~~~ 80 (462)
+...+++..-.--+.+..+..|-+.++.+++..... ...++..++.|+++||.++|+...... ........+.+..
T Consensus 272 ~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~-~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (465)
T TIGR00894 272 GHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPY-LFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIF 350 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444566777766554 345688899999999976553221110 0011111111111
Q ss_pred H--hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhh
Q 012495 81 L--YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGL 158 (462)
Q Consensus 81 l--~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~a 158 (462)
. .+. +.+ ..|....+............+ ..|....|..+ +.+....++.+.
T Consensus 351 ~~~~~~----~~~---------------------~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~ 403 (465)
T TIGR00894 351 AYALPY----LSA---------------------AFYLTIIILTLANAVSSGPLA-GVLINSLDLAP-RFLGFIKGITGL 403 (465)
T ss_pred HHHHHH----cCC---------------------chHHHHHHHHHHHHHhhhhhh-hhhhchhhcCh-hHHHHHHHHHHH
Confidence 1 000 000 112222223333333323334 36666667665 477888888888
Q ss_pred HHHHHHHhhhhhHHHh
Q 012495 159 GANVALIFSGRTVKYF 174 (462)
Q Consensus 159 g~~lG~i~gg~~~~~l 174 (462)
++++|.++++.+++.+
T Consensus 404 ~~~l~~~i~p~l~g~~ 419 (465)
T TIGR00894 404 PGFIGGLIASTLAGNI 419 (465)
T ss_pred HHHHHHHHHHHhhhee
Confidence 8888888888777654
No 194
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=94.81 E-value=1.5 Score=44.93 Aligned_cols=116 Identities=9% Similarity=0.018 Sum_probs=71.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
|.++.+.+++...... ..++..+..+++.||.++++++..... ......++++ ++
T Consensus 237 g~s~~~~G~~~~~~~~-g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~---------~~-------------- 291 (393)
T PRK11195 237 GITLNQPAYLQAVVAI-GIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL---------QH-------------- 291 (393)
T ss_pred CCChhHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH---------Hh--------------
Confidence 3336677888776554 446778899999999999887655432 1111111111 00
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhh-hhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDE-AKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~q-akR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
+.|...+.....+.......+ ..++.+.|..++|+ +.|..++.+...++|..+|..+....
T Consensus 292 --------~~~~~~~~~~~~G~~~g~~~~-~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 292 --------SLLPAYPLLILIGALGGFFVV-PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred --------HHHHHHHHHHHHHHhhhhhhh-hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 223333333344444333334 36677777765554 68899999999999999988776644
No 195
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=94.80 E-value=3.7 Score=43.44 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=77.0
Q ss_pred HHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcc-cCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 012495 6 LFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADK-LSKQALFYTVIVPFIAFFGAFGFLLYPL 84 (462)
Q Consensus 6 ~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r-~~r~~v~~~~l~~f~~~~~lf~~~l~p~ 84 (462)
.+.+|+....+|.+-.+. .+.....-...++ + -+...+=||++|| .|+||.+...-....+..++.+. |
T Consensus 43 iL~~Yl~~~~~~gLg~~~----~~A~~l~~~y~sl-V-Y~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~---~- 112 (498)
T COG3104 43 ILILYLYYQLGDGLGFDE----THATGLFSAYGSL-V-YLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI---S- 112 (498)
T ss_pred HHHHHHHHhccccCCcCh----HhhHHHHHHHHHH-H-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc---c-
Confidence 356777888888854443 2333433333332 3 2455666889999 89988766555444444433332 0
Q ss_pred ccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCChhhhh--hhhhhhhhHHH
Q 012495 85 SNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY-VMAELWGSVVISVLFWGFANQITTVDEAK--RFYPLFGLGAN 161 (462)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy-v~~el~~~~~~s~lfwa~~ndi~~~~qak--R~fgli~ag~~ 161 (462)
+..+++ ..++...+= +-.+++- -+.| +++.|..+++|.+ +.|.++.++.|
T Consensus 113 -~~~~~~---------------------gl~i~L~~I~iG~Gl~K-~NiS----~llg~ly~~~DprrD~gFt~fY~~iN 165 (498)
T COG3104 113 -SVSGPG---------------------GLYIGLALIIVGTGLFK-PNIS----SLLGELYPKDDPRRDGGFTLFYMGIN 165 (498)
T ss_pred -cccccc---------------------HHHHHHHHHHhcccccc-ccHH----HHHHHhcCCCCcccCCCccEEEEEee
Confidence 000111 111111111 1122232 1344 4788888877655 48999999999
Q ss_pred HHHHhhhhhHHHhhh
Q 012495 162 VALIFSGRTVKYFSN 176 (462)
Q Consensus 162 lG~i~gg~~~~~l~~ 176 (462)
+|.++++.++.+++.
T Consensus 166 iGsl~~p~i~~~~~~ 180 (498)
T COG3104 166 IGSLIAPIITGLLAI 180 (498)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999988774
No 196
>PRK11462 putative transporter; Provisional
Probab=94.71 E-value=1.7 Score=45.77 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHH
Q 012495 41 PMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120 (462)
Q Consensus 41 ~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~f 120 (462)
..+++.+++.++++||+++|++.............++. .. |+ .+.|...+.
T Consensus 274 i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~--~~-------~~--------------------~~~~~~~~~ 324 (460)
T PRK11462 274 VGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMF--FV-------PM--------------------QASITMFVF 324 (460)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH--Hh-------ch--------------------hHHHHHHHH
Confidence 45567889999999999999887644432222221111 11 11 011111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhh---hhhh----hhhhhhHHHHHHHhhhhhHHHhh
Q 012495 121 YVMAELWGSVVISVLFWGFANQITTVDE---AKRF----YPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 121 yv~~el~~~~~~s~lfwa~~ndi~~~~q---akR~----fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.++.++......+ +.|++.+|+.+.+| .+|. |+..+....+|.-+|+.+.+.+-
T Consensus 325 ~~l~g~~~~~~~~-l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 325 IFVIGVLHQLVTP-IQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444434445 58999999999765 3333 44444555566666665555443
No 197
>PRK10091 MFS transport protein AraJ; Provisional
Probab=94.53 E-value=1.9 Score=43.81 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=36.6
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFG 75 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~ 75 (462)
.|.++++..++...... ...+..+..++++||+++++.........++.++
T Consensus 230 ~g~s~~~~~~~~~~~~~-~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~ 280 (382)
T PRK10091 230 SGFSETSMTFIMMLVGL-GMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALL 280 (382)
T ss_pred cCCCHHHHHHHHHHHHH-HHHHHhHHHheeccccCchhHHHHHHHHHHHHHH
Confidence 34346777777775554 4568899999999999999988766655554443
No 198
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=94.43 E-value=0.9 Score=44.76 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=83.7
Q ss_pred hhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCch
Q 012495 13 RDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQA 92 (462)
Q Consensus 13 r~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~ 92 (462)
..+.+.++.+++|-++.+-+=+-......+ ...+|++|.++|++|++-....+ ..+....-=..+.
T Consensus 284 i~lg~~fF~~rfGlS~~~a~~i~s~vy~Is-av~spvfg~i~Dk~G~n~~wv~~--a~~~tl~~H~~l~----------- 349 (459)
T KOG4686|consen 284 ITLGPMFFQKRFGLSAVSAGNILSTVYGIS-AVLSPVFGAISDKYGFNLWWVAS--ACILTLLGHSGLF----------- 349 (459)
T ss_pred hhhhHHHHHHhhCCChhhccchhhhhhhhh-hhhhhhHHHhHhhhcceehhHHH--HHHHHHHHhhhHH-----------
Confidence 456777888888854444443333333334 47899999999999997654322 1111111000000
Q ss_pred HHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHH
Q 012495 93 LADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVK 172 (462)
Q Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~ 172 (462)
...|.-+.--..-++-+++.-. -.|-.++.+.+.+|-...||.+....|+|..+.+.+++
T Consensus 350 -------------------Ft~lsPy~~m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag 409 (459)
T KOG4686|consen 350 -------------------FTFLSPYTSMTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAG 409 (459)
T ss_pred -------------------hhhccHHHHHHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhh
Confidence 1222222222455666655544 48999999999999999999999999999999888887
Q ss_pred Hhhh
Q 012495 173 YFSN 176 (462)
Q Consensus 173 ~l~~ 176 (462)
....
T Consensus 410 ~i~d 413 (459)
T KOG4686|consen 410 FIAD 413 (459)
T ss_pred eeec
Confidence 7653
No 199
>PF12832 MFS_1_like: MFS_1 like family
Probab=94.40 E-value=0.11 Score=40.68 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=51.6
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIV 68 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~ 68 (462)
+|+-..+.+.+-|--....-+ .|-++++++.+..... .+.++..|++|+++||+++++.......
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~-~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRP-LIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 456667777888887777765 5666899999998655 5678999999999999999998766544
No 200
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=94.35 E-value=1.5 Score=39.15 Aligned_cols=85 Identities=18% Similarity=0.342 Sum_probs=55.8
Q ss_pred HHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHH
Q 012495 52 KLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVV 131 (462)
Q Consensus 52 ~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~ 131 (462)
.+.+++|.|..+.+....+..+...+ ++ | +.|... ..+.+-| +.
T Consensus 59 ~iv~~lg~K~sm~lg~~~y~~y~~~~---~~-------~----------------------~~~~l~---~~s~l~G-~~ 102 (156)
T PF05978_consen 59 SIVNKLGPKWSMILGSLGYAIYIASF---FY-------P----------------------NSYTLY---PASALLG-FG 102 (156)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH---Hh-------h----------------------hHHHHH---HHHHHHh-hh
Confidence 45788999998877776665443322 22 1 223222 2232333 33
Q ss_pred HHHHHH----HHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 132 ISVLFW----GFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 132 ~s~lfw----a~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
-+ .+| .++.+..++++..|..++.-+..+.+.++|+...-.
T Consensus 103 ~a-~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 103 AA-LLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred hH-HhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 355 478899999999999999999999999988765543
No 201
>PRK11043 putative transporter; Provisional
Probab=94.34 E-value=2.1 Score=43.67 Aligned_cols=122 Identities=11% Similarity=-0.053 Sum_probs=70.1
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
|-++++.+....... .+..+.....+++.||+++|+.........+.....+..... ..++
T Consensus 234 g~s~~~~g~~~~~~~-~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------------- 294 (401)
T PRK11043 234 GYSPADIGLSYVPQT-IAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASL----LSHP-------------- 294 (401)
T ss_pred CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH----hccC--------------
Confidence 433566776655433 344556677789999999999876665555444333222110 0001
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
..|.....+...+.......+ ..++...|..+ +++.|..++.+.....+...++..++.+.
T Consensus 295 --------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 355 (401)
T PRK11043 295 --------SLVPLLIPFCVMAAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI 355 (401)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 112111222222332224445 36666666664 68999999999988888888887776553
No 202
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=94.27 E-value=0.63 Score=47.55 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 122 VMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 122 v~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
...+.......+ .+|++.+|.+++|.+.+..|+.+..+++|.++++.....+
T Consensus 288 ~l~~~~~~~~~~-~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~ 339 (368)
T TIGR00903 288 GIAGLLMLPAYA-IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLF 339 (368)
T ss_pred HHHHHhhhhhHH-HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHH
Confidence 334444444556 4999999999999999999999999999999988777543
No 203
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=94.13 E-value=1.2 Score=47.13 Aligned_cols=32 Identities=9% Similarity=0.034 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAF 73 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~ 73 (462)
...+..|+-|+++||+|++|+..+.....++.
T Consensus 298 ~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 298 IGAIARSVGGAISDKFGGVRVTLINFIFMAIF 329 (462)
T ss_pred HHHHHHHhhHHHHHhcCchHHHHHHHHHHHHH
Confidence 34578899999999999999988776544443
No 204
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=94.06 E-value=1.2 Score=45.79 Aligned_cols=118 Identities=9% Similarity=-0.104 Sum_probs=60.4
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|-++++.+.+..... ...++.....+++.||.+++.+. .......+...+.....
T Consensus 247 ~g~s~~~~g~~~~~~~-~~~iig~~~~~~l~~r~~~~~l~-~~~~~~~~~~~~l~~~~---------------------- 302 (394)
T PRK10213 247 AGFGVDGLTLVLLSFG-IASFVGTSLSSFILKRSVKLALA-GAPLVLAVSALVLTLWG---------------------- 302 (394)
T ss_pred cCCChhHHHHHHHHHH-HHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHh----------------------
Confidence 3433667777666444 35567778899999995444333 22222222211111100
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|......+..+.-.....+ ..-+++++..+ +|..|..+......++|..+|+.+.+.+.
T Consensus 303 --------~~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~ 364 (394)
T PRK10213 303 --------SDKIVATGVAIIWGLTFALVPV-GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYAL 364 (394)
T ss_pred --------hhHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0223333233333322222223 34556777776 55556666666667777777777766654
No 205
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=93.88 E-value=2.4 Score=42.63 Aligned_cols=45 Identities=4% Similarity=0.096 Sum_probs=34.0
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHH
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVP 69 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~ 69 (462)
.|-++++.+++.....+ ..++..+..+++.||+|||+.+......
T Consensus 225 ~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 269 (377)
T PRK11102 225 NGVSPQNFGYYFALNIV-FLFVMTIINSRFVRRVGALNMLRFGLWI 269 (377)
T ss_pred hCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 34346778887776554 4467889999999999999987766654
No 206
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.76 E-value=1.5 Score=48.51 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=104.9
Q ss_pred HHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhh-----c--cCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 012495 135 LFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLR-----K--NLGPGVDGWAVSLKGMMSIVVLMGLSIC 207 (462)
Q Consensus 135 lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~-----~--~~gp~~~~~~~~~~~l~~~~~~~g~l~l 207 (462)
+==+|+.|-...++...++|++.+...+|-++|=.+.+++.+.- + .+.|....|.... -+.+ +++|.+.+
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAW--WlGF-Li~g~~~~ 333 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAW--WLGF-LICGALLL 333 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHH--HHHH-HHHHHHHH
Confidence 35579999999999999999999988877776666666555431 1 1234333444332 1112 33333222
Q ss_pred HHH---HHHhhhcCCCc-------cc--cccc----cCCC-----CChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 012495 208 GLY---WWVNNNVELPT-------RS--KKKK----EKPK-----MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEV 266 (462)
Q Consensus 208 ~~~---~~~~~~~~~p~-------~~--~~~~----~k~~-----~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~ 266 (462)
... +...|..+.+. .+ +.++ ++++ ..+..++|.++++|......+.-+......+-.-.
T Consensus 334 ~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~t 413 (735)
T KOG3626|consen 334 FSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYIT 413 (735)
T ss_pred HHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHH
Confidence 211 11222221110 00 0000 1111 14668899999999866666666666655555555
Q ss_pred HHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHH-HHHhhHHHHHHhch--hHHHHHHHHHHHHHHHH
Q 012495 267 TWKSKLKAQFPSPNEYSSFMGDFSTATGIATFT-MMLLSQFVFDKFGW--GVAAKITPTVLLLTGVG 330 (462)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~-q~~l~~~li~r~G~--~~~~~i~P~~~l~~~~~ 330 (462)
-...+++.+|..++..+.+. ...+++-... -.+++|.++||+-. +.++...-++.+++.+.
T Consensus 414 FlPKyLE~Qfg~sas~An~l---~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 414 FLPKYLETQFGISASLANIL---TGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred hhHHHHHHHcCCCHHHHHHH---hhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 55667888898777554432 3344444433 35778899988754 44444444443344433
No 207
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=93.33 E-value=2.9 Score=44.43 Aligned_cols=119 Identities=8% Similarity=0.094 Sum_probs=75.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
.++-.|+-...- ...++.+..=..+.||.|||+++..+.....+...++...+. ++ +. .
T Consensus 304 ~~~a~~an~~~g-~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~-----l~-----~~----~------ 362 (485)
T KOG0569|consen 304 PEEAQYANLGIG-IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALF-----LS-----NS----F------ 362 (485)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH-----HH-----HH----h------
Confidence 444566655443 344677788888999999999999999888887777765432 00 00 0
Q ss_pred hhhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 108 PLAIMRIWSFC----LFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 108 ~i~~~~~w~~~----~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
..|..+ ...+..-.++...-+ .-|-+.+|.++.+.|......-++..-++-.+-+..--.
T Consensus 363 -----~~~~~y~~i~~~~~~~~~f~~G~gp-i~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~ 426 (485)
T KOG0569|consen 363 -----GSWLSYLCIAAIFLFIISFAIGPGP-IPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPP 426 (485)
T ss_pred -----hhHHHHHHHHHHHHHHHhhhcCCCc-hhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012211 111112223322345 689999999999999998888888777777665554433
No 208
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=93.31 E-value=1.7 Score=45.07 Aligned_cols=116 Identities=10% Similarity=0.151 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhh
Q 012495 31 IPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLA 110 (462)
Q Consensus 31 l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~ 110 (462)
+-..-.... ..+++...++|+|.+|++.|+++.+.+......- +++... +.+
T Consensus 290 lll~g~~~~-vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~-~~~~~~-------~~~------------------- 341 (438)
T COG2270 290 LLLIGIALS-VVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA-LYLIFL-------EGE------------------- 341 (438)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH-HHHHHc-------ccc-------------------
Confidence 333333334 4557889999999999999999887765432211 111111 111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhc
Q 012495 111 IMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRK 179 (462)
Q Consensus 111 ~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~ 179 (462)
...|.+.+++ +.+-.-.-+ .-=+|.++..|++|..|+||+.+..+-.+.++|+.+.+.+++..+
T Consensus 342 -~~f~i~gll~---g~s~G~~qA-~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 342 -LDFWILGLLV---GTSLGGAQA-SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred -HHHHHHHHHH---HHhcchHHH-HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 2456655433 222112344 367899999999999999999999999999999999988876543
No 209
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=93.16 E-value=0.77 Score=47.33 Aligned_cols=119 Identities=19% Similarity=0.143 Sum_probs=66.5
Q ss_pred ecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhh
Q 012495 21 VTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNI 100 (462)
Q Consensus 21 ~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~ 100 (462)
.+++|.+..+-......+.++.+ +.=|+=|+|+||+|.+|+........++.-.+.+. +....-|+.
T Consensus 246 ~~~fg~~~~~Ag~~a~~f~~~g~-l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~---~~~~~~~~~--------- 312 (417)
T COG2223 246 VTQFGLSPVTAGLIAFLFPLIGA-LARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSL---FLTGFGHGG--------- 312 (417)
T ss_pred HHhcCCChhhHHHHHHHHHHHHH-HHHhccchhhhhccchhHHHHHHHHHHHHHHHHHc---cccccccCc---------
Confidence 33444333334455555666675 68899999999999999988777766665443332 111111100
Q ss_pred hCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHh
Q 012495 101 LGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIF 166 (462)
Q Consensus 101 ~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~ 166 (462)
.. +.-.+.....++..++=+. + ....+.++++ +|..-.-|++++.+++|+.+
T Consensus 313 ---~~-----~~~~~~~l~l~~~~G~GnG---s--vfk~Ip~if~-~~~G~v~G~vga~G~lGGf~ 364 (417)
T COG2223 313 ---SF-----VVFVAVFLALFVFAGLGNG---S--VFKMIPVIFP-KETGAVTGIVGAIGGLGGFF 364 (417)
T ss_pred ---ch-----HHHHHHHHHHHHHhccCcc---h--heeechHHHH-hhhhHHHHHHHHhccccccc
Confidence 00 0112222223333333221 1 3345556665 48888889999999998653
No 210
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=92.86 E-value=2.1 Score=40.08 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhh
Q 012495 30 IIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPL 109 (462)
Q Consensus 30 ~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i 109 (462)
..++......... .+..+..|++.||.|||+........+.....+.++. ++
T Consensus 40 ~~~~~~~~~~~~~-~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------~~------------------ 91 (338)
T COG0477 40 LYGLLLSAFFLGY-AIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA---------PN------------------ 91 (338)
T ss_pred HHHHHHHHHHHHH-HHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC---------cc------------------
Confidence 3566666555433 4556999999999999977666655433332222211 00
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh-hhhhhhhhhhhh-HHHHHHHhhhhhHHHhh
Q 012495 110 AIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTV-DEAKRFYPLFGL-GANVALIFSGRTVKYFS 175 (462)
Q Consensus 110 ~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~-~qakR~fgli~a-g~~lG~i~gg~~~~~l~ 175 (462)
...|.....+...++......+ ...++++|..+. +++.+..+.... ...+|.++++.....+.
T Consensus 92 --~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 92 --VGLALLLILRLLQGLGGGGLLP-VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred --chHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0234445555555555555666 589999999998 678888888888 57788888875555444
No 211
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=92.62 E-value=5.8 Score=40.28 Aligned_cols=120 Identities=12% Similarity=-0.009 Sum_probs=67.0
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
.|.++.+.+++.... .+..++..++.+++.||.+++... ..........++..... .+.
T Consensus 238 ~g~~~~~~~~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~------------- 296 (394)
T PRK11652 238 LGLSSMTVSILFILP-IPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGW-----FGV------------- 296 (394)
T ss_pred cCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-----hcc-------------
Confidence 343356677776644 356667788899999999843322 22222222111111000 000
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
.+.|.....-++.+.-.....+ ..++++.|..+ |++.+..++.+...++|..+|+.+.+.+
T Consensus 297 --------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 297 --------MNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0123222222333333334555 47778888886 5667778999999999999998877654
No 212
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=92.10 E-value=9.7 Score=39.47 Aligned_cols=116 Identities=9% Similarity=0.132 Sum_probs=74.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchh
Q 012495 29 EIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGP 108 (462)
Q Consensus 29 ~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (462)
+.+..+.+..+ .+=+.+....+|+..|+|.++++.++....++=+.+++..- +|
T Consensus 243 ~~~g~~~~l~~-~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-------~~------------------ 296 (400)
T PF03825_consen 243 STIGILWALGV-VAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-------DP------------------ 296 (400)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-------CC------------------
Confidence 44555555444 35567777889999999999999999988888888777531 11
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCChhhhhhhhhhhhh-HHHHHHHhhhhhHHHhh
Q 012495 109 LAIMRIWSFCLFYVMAELWGSVVISV---LFWGFANQITTVDEAKRFYPLFGL-GANVALIFSGRTVKYFS 175 (462)
Q Consensus 109 i~~~~~w~~~~fyv~~el~~~~~~s~---lfwa~~ndi~~~~qakR~fgli~a-g~~lG~i~gg~~~~~l~ 175 (462)
.|.....-+.+++.-.+.... ..-.|+++.+|+|.+.+.=++.++ ..++|..+|+.+.+.+-
T Consensus 297 -----~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 297 -----WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred -----cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 111111111111111222331 244899999999999998888766 45677777777776654
No 213
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=91.77 E-value=0.033 Score=60.07 Aligned_cols=293 Identities=12% Similarity=0.103 Sum_probs=0.3
Q ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHH---HHhhcccccCC--------
Q 012495 22 TAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGF---LLYPLSNAIHP-------- 90 (462)
Q Consensus 22 ~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~---~l~p~~~~~~~-------- 90 (462)
.|++-+..+.+++...+- ..+++++...+..-+|-.|.|.+-......++..++|++ ..-|++...+.
T Consensus 31 rRF~l~S~~~G~i~s~~d-i~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 31 RRFGLSSSQSGLISSSYD-IGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 334433566777777666 455678888888889989999888777777777776653 11111100000
Q ss_pred -chHHHHHh--hhhCCCcchhh-hhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 91 -QALADKLL--NILGPRFLGPL-AIMRIWSFCLFYVMAEL----WGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 91 -~~~~~~~~--~~~~~~~~~~i-~~~~~w~~~~fyv~~el----~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
+..++... ......-..-. .-...|.+..+++.+.+ =++-..+ +=.+|+.|..+++++.-+.|.+.+...+
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t-LG~tYiDDnv~~~~splYiGi~~~~~~l 188 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT-LGITYIDDNVSKKNSPLYIGILYAMSIL 188 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc-ceeeeeccccccccCccchhhhhHHhhc
Confidence 00000000 00000000000 00122333344444433 3444556 6899999999999999999999887777
Q ss_pred HHHhh----hhhHHHhhhhhc------cCCCCCchhHHHHHHHHHHHHHHHHHHHHH---HHHHhhhcCCC----cc---
Q 012495 163 ALIFS----GRTVKYFSNLRK------NLGPGVDGWAVSLKGMMSIVVLMGLSICGL---YWWVNNNVELP----TR--- 222 (462)
Q Consensus 163 G~i~g----g~~~~~l~~~~~------~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~---~~~~~~~~~~p----~~--- 222 (462)
|-.+| |.......+..+ .+.|....|.... -+.+ +++|.+.+.. +....|..+.+ ++
T Consensus 189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAW--WLGf-li~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~ 265 (539)
T PF03137_consen 189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAW--WLGF-LICGILLFLSAIPLFFFPKKLPGTSERQEEKES 265 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHH--HHHH-HHHHHHHHHHHHHHHcCCccCCCcccccchhhh
Confidence 66555 444444332221 1223222232221 0111 1122111111 11122322111 00
Q ss_pred cc-c---------cccC-------CCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhH
Q 012495 223 SK-K---------KKEK-------PKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSF 285 (462)
Q Consensus 223 ~~-~---------~~~k-------~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f 285 (462)
++ + ++++ ...++...++.++++|....+.+.........+-+-.-...+++.+|.-++..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~ 345 (539)
T PF03137_consen 266 SERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASL 345 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 00 0 0000 11356778889999998665555544444443333333345667777766544444
Q ss_pred HhhHHHHHHHHHHH-HHHhhHHHHHHhchh--HHHHHHHH
Q 012495 286 MGDFSTATGIATFT-MMLLSQFVFDKFGWG--VAAKITPT 322 (462)
Q Consensus 286 ~g~~~~~~gi~~l~-q~~l~~~li~r~G~~--~~~~i~P~ 322 (462)
. ...+.+-... -.++.+.++||+.++ ..+....+
T Consensus 346 l---~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v 382 (539)
T PF03137_consen 346 L---TGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIV 382 (539)
T ss_dssp ----------------------------------------
T ss_pred H---HhhhhcchhheehheEEEEEEEecCcHHHHHHHHHH
Confidence 3 2222232222 356677899988764 34443333
No 214
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=91.21 E-value=21 Score=37.17 Aligned_cols=136 Identities=12% Similarity=0.130 Sum_probs=80.3
Q ss_pred hhHHHHHHhhhccceee------ecc-cCCCcch----hhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 012495 4 CILFNYTILRDTKDVLV------VTA-KGSSAEI----IPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIA 72 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~------~~~-~g~~a~~----l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~ 72 (462)
+.++.|++++..||+-= .+. .|-+.|+ +--..+... +.+.....-+.|..+-|+++.........
T Consensus 8 ~llc~~gf~~~frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSy----l~~l~~vflltd~l~Ykpviil~~~~~i~ 83 (412)
T PF01770_consen 8 LLLCLFGFFKEFRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSY----LAFLLPVFLLTDYLRYKPVIILQALSYII 83 (412)
T ss_pred HHHHHHHHHHhcCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56778888888877521 111 1111222 222223222 33445556788999999998877776666
Q ss_pred HHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhh
Q 012495 73 FFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRF 152 (462)
Q Consensus 73 ~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~ 152 (462)
...+.-+. ++ .|..-+.-+.=++..+.- . .+.+|+-..-|+++-+|.
T Consensus 84 t~~lll~~---------~s----------------------v~~mq~~q~~yg~~~a~e-v-ay~sYiys~v~~~~yq~v 130 (412)
T PF01770_consen 84 TWLLLLFG---------TS----------------------VLAMQLMQFFYGLATAAE-V-AYYSYIYSVVDKEHYQKV 130 (412)
T ss_pred HHHHHHHH---------Cc----------------------HHHHHHHHHHHHHHHHHH-H-HHHHHheeecCHHHHHHH
Confidence 55543220 11 111111111112222222 2 378899999999999999
Q ss_pred hhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 153 YPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 153 fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
-+..-++.-+|-.+|+.+...+.+
T Consensus 131 ts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 131 TSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888887776654
No 215
>PRK10133 L-fucose transporter; Provisional
Probab=91.08 E-value=7.4 Score=40.68 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHH
Q 012495 248 RDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLL 325 (462)
Q Consensus 248 ~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~l 325 (462)
..+..+.+..++..+..+...... ++.++.+++.. |.......+...+-....+++.+|+|-|+++.+.-++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~---gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 344455555666666666666555 66666555333 334445555554445668899999999999988777543
No 216
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=91.00 E-value=12 Score=38.99 Aligned_cols=114 Identities=12% Similarity=0.225 Sum_probs=77.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
.+.++++.+..+ .+-++....-.++.||+|.|+.+.+......+=..+.++. +
T Consensus 258 ~~~~G~l~s~~v-~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~---------~----------------- 310 (412)
T PF01306_consen 258 NQMYGYLWSVQV-FLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA---------T----------------- 310 (412)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----------------------------
T ss_pred hhHHhHHHHHHH-HHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---------c-----------------
Confidence 566899988665 4556788888999999999999988877666666655542 1
Q ss_pred hhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCChhhhhhhhhh-hhhHHHHHHHhhhhhHHHhh
Q 012495 108 PLAIMRIWSFCLFYVMAEL-WGSVVISVLFWGFANQITTVDEAKRFYPL-FGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el-~~~~~~s~lfwa~~ndi~~~~qakR~fgl-i~ag~~lG~i~gg~~~~~l~ 175 (462)
+.|.....-..-++ ++...++ ..-|+++.+|+|...+.|.+ ...+.++|.++.+...+.+-
T Consensus 311 -----~~~~i~~~klLH~~e~~l~lva--~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly 373 (412)
T PF01306_consen 311 -----NPWVISLIKLLHALEFPLLLVA--AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY 373 (412)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 22333333333333 2323333 78899999999999999987 46788888888777776654
No 217
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=90.87 E-value=0.0073 Score=62.91 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhh
Q 012495 31 IPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLA 110 (462)
Q Consensus 31 l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~ 110 (462)
..++..... ...++-.++.|.++||+|||+.+..+.....+.-++.++. |+.
T Consensus 48 ~~~~~~~~~-~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~---------~~~------------------ 99 (451)
T PF00083_consen 48 SSLLTSSFF-IGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA---------PSY------------------ 99 (451)
T ss_pred HHHHHHHHH-hhhccccccccccccccccccccccccccccccccccccc---------ccc------------------
Confidence 445555443 4556788999999999999999887776555544433321 100
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 111 IMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 111 ~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
.+.|...+.+.+.++....... ....|+.|+.+++.|.+...+...+..+|.+++..+....
T Consensus 100 -~~~~~~~~~R~~~G~~~g~~~~-~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 100 -NNFWMLLIGRFLIGFGIGGAYV-VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred -cccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence 0344555555667765545555 6899999999999999999999999999999887665443
No 218
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=90.16 E-value=5.4 Score=39.63 Aligned_cols=113 Identities=8% Similarity=0.032 Sum_probs=67.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
+++-......+...+ .+--.+-++++||+|+||++........+..+++... +..
T Consensus 177 ~~~a~~~~s~~~~~~-~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~--------~~~---------------- 231 (310)
T TIGR01272 177 EDQAAHFTAYTWGGA-MVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT--------HGY---------------- 231 (310)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--------CCH----------------
Confidence 556666666555444 5778899999999999998776654444433222110 000
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
...| .....+...+.+.+ ...+.+.+..+. +.++.-++. ..+.+|..+++.+++.+++
T Consensus 232 ----~~~~----~~~l~g~~~s~i~P-~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 232 ----VAMW----FVLALGLFNSIMFP-TIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred ----HHHH----HHHHHHHHHHHHHH-HHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 0112 12234555556777 477778777664 345555554 5666888888877776653
No 219
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.21 E-value=33 Score=36.32 Aligned_cols=199 Identities=16% Similarity=0.178 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccC-CCCCch--hHHH-
Q 012495 120 FYVMAELWGSVVISVLFW----GFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNL-GPGVDG--WAVS- 191 (462)
Q Consensus 120 fyv~~el~~~~~~s~lfw----a~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~-gp~~~~--~~~~- 191 (462)
+|.-+.+-| +--+ ++| +|..+.++.|+-.|.-++.=+.+..++++||..........+.- .+..+. +..+
T Consensus 105 ~yfssallG-~Gaa-llw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (461)
T KOG3098|consen 105 LYFSSALLG-FGAA-LLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEV 182 (461)
T ss_pred HHHHHHHhh-hhHH-heecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcch
Confidence 445555655 5556 578 48999999999999999999999999999998765544332211 011110 0000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc-c-cccCCCCChHHHHH---HHhhcHHHHHHHHHHHHHHHHHHHHH
Q 012495 192 -LKGMMSIVVLMGLSICGLYWWVNNNVELPTRSK-K-KKEKPKMGTMESLK---FLVSSRYIRDLATLVVAYGISINLVE 265 (462)
Q Consensus 192 -~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~-~-~~~k~~~~~~~~l~---~i~~s~yl~~l~~~v~~~~~~~~l~e 265 (462)
...+... ++.+.++-....-.-.....|.+.. . +++. +.+..+.+| ...++|-++.++...+..+...++..
T Consensus 183 ~~~~~~i~-~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~ 260 (461)
T KOG3098|consen 183 LFIDFEIK-VLFGVLLAISVLSIINFDFLPSKDVVNCKSSS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWI 260 (461)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHhhheeecCccchhhhhhhc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH
Confidence 0001111 1111111111100111122343211 1 1111 123344433 34556667677777776667776666
Q ss_pred HHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHH----HHHhhHHHHHHhchhHHHHHHHHH
Q 012495 266 VTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFT----MMLLSQFVFDKFGWGVAAKITPTV 323 (462)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~----q~~l~~~li~r~G~~~~~~i~P~~ 323 (462)
..+.....-..+....-+.+.+.....+|+..+. ...+. |=+|++|-.....+.-++
T Consensus 261 ~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~-~rir~fg~~~~~~~~~~~ 321 (461)
T KOG3098|consen 261 SIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILS-KRIRGFGRKPTVLIGIII 321 (461)
T ss_pred hccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHh-hhhhhcccCcchhHHHHH
Confidence 6666555433221112223333334445554432 12333 446777777766665554
No 220
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=89.15 E-value=19 Score=37.19 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=78.1
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSN 86 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~ 86 (462)
..|+-++|...... |-+++.+++....+= ...++-+..-||++|| +.++.+.......+..++.+.+.-
T Consensus 229 ~~ftYi~P~L~~v~----g~s~~~vs~~Ll~~G-v~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~----- 297 (394)
T COG2814 229 ALYTYIRPFLESVA----GFSVSAVSLVLLAFG-IAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG----- 297 (394)
T ss_pred hhHHhHHHHHHHcc----CCCHhHHHHHHHHHH-HHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-----
Confidence 45677777765432 223678888887655 4557899999999999 888887777666666666554421
Q ss_pred ccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhhhhhhhhhhhhHHHHHH
Q 012495 87 AIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQI--TTVDEAKRFYPLFGLGANVAL 164 (462)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi--~~~~qakR~fgli~ag~~lG~ 164 (462)
+ +.|... +..-+|+-...+ .-..+..+. ..+|++.-.-++..+..|+|-
T Consensus 298 ----~---------------------~~~~~~---~~~~~wg~a~~~-~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgi 348 (394)
T COG2814 298 ----A---------------------SPALAL---ALLFLWGFAFSP-ALQGLQTRLARLAPDAADLAGSLNVAAFNLGI 348 (394)
T ss_pred ----c---------------------hHHHHH---HHHHHHHHHhhh-hhhHHHHHhcccCCCchHHHHHHHHHHHHHHH
Confidence 1 112111 111114332222 122233233 557888888888888888777
Q ss_pred HhhhhhHHHhh
Q 012495 165 IFSGRTVKYFS 175 (462)
Q Consensus 165 i~gg~~~~~l~ 175 (462)
-+|+.+.+...
T Consensus 349 a~GA~lGG~v~ 359 (394)
T COG2814 349 ALGAALGGLVL 359 (394)
T ss_pred HHHHHHHHHHH
Confidence 77776666544
No 221
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=89.01 E-value=6.9 Score=41.99 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=71.4
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 25 GSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 25 g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
|.+..+..++..... .+..+.-++.|.+.|+...++.....+......... ...|. +
T Consensus 329 g~~~~~aa~l~Siig-i~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~---~~~p~---------~---------- 385 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIG-VSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR---LFLPF---------A---------- 385 (509)
T ss_pred CCChhhhHHHHHHHH-HhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH---HHHHH---------h----------
Confidence 333455666666544 566788899999999988544433222222221111 11111 0
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.++|....+-++-+.......+ +.--.+.|+...|+-.+.||+.....+++.++|+.+.+.+.
T Consensus 386 -------~~~~~l~~~~~~fG~~~g~~~~-l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~ 448 (509)
T KOG2504|consen 386 -------TTYVGLIVFSILFGFCVGSFSS-LTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY 448 (509)
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence 1223333332333333222222 22247789999999999999999999999999998887554
No 222
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=88.86 E-value=11 Score=38.90 Aligned_cols=73 Identities=10% Similarity=0.092 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH
Q 012495 247 IRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTV 323 (462)
Q Consensus 247 l~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~ 323 (462)
+..++...+..++..++........ ++.++.++.. .|.......+..++-....+++.+|+|-|+++.+.-++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~---~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l 77 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQ---AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL 77 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 3456667777777777776666555 5556655533 33344444444444556688999999999988776664
No 223
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=87.99 E-value=3.7 Score=43.93 Aligned_cols=97 Identities=21% Similarity=0.380 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHH
Q 012495 42 MAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFY 121 (462)
Q Consensus 42 ~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fy 121 (462)
.-+.+-+.-+|+.+++|+-+++++.+..+.+=|..+..+ + |.|.-.
T Consensus 418 gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--------------~-----------------n~W~vL--- 463 (618)
T KOG3762|consen 418 GEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--------------Q-----------------NPWMVL--- 463 (618)
T ss_pred chHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--------------c-----------------Cchhee---
Confidence 445566777799999999999999999998888766653 1 223221
Q ss_pred HHHHHHHHHHHHHHHH----HHHHhhCChhhhhhhhhh-----hhhHHHHHHHhhhhhHHHh
Q 012495 122 VMAELWGSVVISVLFW----GFANQITTVDEAKRFYPL-----FGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 122 v~~el~~~~~~s~lfw----a~~ndi~~~~qakR~fgl-----i~ag~~lG~i~gg~~~~~l 174 (462)
-.|+...++.. ++| +|+.+..|++-+...=++ .|.|-++|.++||.+...+
T Consensus 464 -Pieilqgit~a-liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f 523 (618)
T KOG3762|consen 464 -PIEILQGITHA-LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF 523 (618)
T ss_pred -eHHHHHHHHHH-HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence 12333333344 244 578899988766655444 4668899999999887653
No 224
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=84.82 E-value=51 Score=33.94 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=27.6
Q ss_pred cceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHH
Q 012495 16 KDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALF 63 (462)
Q Consensus 16 ~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~ 63 (462)
-+.+..+..|.++++.++...... .+.++...+.+++.+|..++|..
T Consensus 241 ~P~~l~~~~g~s~~~~gl~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~ 287 (413)
T PRK15403 241 SPVILIDAGGMTTSQFAWTQVPVF-GAVIVANAIVARFVKDPTEPRFI 287 (413)
T ss_pred ChHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCchhHH
Confidence 344444444444666777765433 34456678888887666665554
No 225
>PTZ00207 hypothetical protein; Provisional
Probab=84.20 E-value=39 Score=37.03 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=34.2
Q ss_pred HHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 012495 267 TWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLL 336 (462)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~l~~~~~ff~l~~ 336 (462)
.+...+++.++.+++..+..+.. |.......+..|++.+|+|-|.+..+.-++ .+++.+...+
T Consensus 48 v~s~~L~~~lgls~~~l~~i~sv----g~~~g~~~lp~G~L~Dr~G~R~vllig~ll---~~iG~ll~al 110 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTV----GIAVGYFLLPYSFIYDYLGPRPIFVLSMTV---FCLGTLLFAL 110 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCcHHHHHHHHHH---HHHHHHHHHH
Confidence 44445566666444222332222 221111223469999999999998877774 3444444443
No 226
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=82.73 E-value=18 Score=38.43 Aligned_cols=96 Identities=8% Similarity=0.103 Sum_probs=72.2
Q ss_pred HHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHH
Q 012495 51 TKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSV 130 (462)
Q Consensus 51 ~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~ 130 (462)
+.+.||.|||...........+.++.++.... .. ..|........+....+.
T Consensus 371 ~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------------~~~~~~~~~~~~~~~~~~ 422 (521)
T KOG0255|consen 371 GLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD-------DL---------------------GGWLHWILPLLGKFFIGS 422 (521)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc-------cc---------------------hhHHHHHHHHHHHHHHHH
Confidence 68889999999999888888888887776531 00 002333344455555545
Q ss_pred HHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 131 VISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 131 ~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
... ....+.++..+..-+....+..+..+.+|.++++.+.....
T Consensus 423 ~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 423 AFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLR 466 (521)
T ss_pred HHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556 36899999999999999999999999999999998876544
No 227
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=82.60 E-value=0.015 Score=60.50 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHH
Q 012495 41 PMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120 (462)
Q Consensus 41 ~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~f 120 (462)
...++....-..+.||+|||+++..+....+++....+...++. ++. + .++ +.+.....
T Consensus 297 ~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~-----~~~--~-----~~~---------~~~~i~~~ 355 (451)
T PF00083_consen 297 LVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLG-----VSS--S-----SWW---------SILSIVFL 355 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-----ccc--c-----ccc---------ccccceee
Confidence 34444555556899999999998887776666655554111100 110 0 000 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 121 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 121 yv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
.+....++...-+ +.|.+.+|.+|.+-|.+..++..+.+.++.++++.+...
T Consensus 356 ~l~~~~~~~g~~~-~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~ 407 (451)
T PF00083_consen 356 ALFFAFFSLGWGP-LPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPY 407 (451)
T ss_pred eeccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 1222233322335 689999999999999999999999999888877766543
No 228
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=81.41 E-value=21 Score=37.57 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc----cCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcc
Q 012495 31 IPFLKTWVNLPMAIGFMLLYTKLADK----LSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFL 106 (462)
Q Consensus 31 l~~l~~~~~l~~~~~~~~~~~~L~~r----~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~ 106 (462)
.+..+...-+ .-+++.|+.|..||| +||||-+..+...- +. +++.++|+..=+.+. ..|+. ..+.-.
T Consensus 69 ~S~iw~~gPi-~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~-i~---~~l~Lig~aaDig~~-lgd~~---~~~~~~ 139 (498)
T KOG0637|consen 69 SSIIWLCGPL-SGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL-IA---VSLFLIGYAADIGLL-LGDNE---RKPVKP 139 (498)
T ss_pred cccccccccc-ccceecccccccccccccccccccchHHHhhHH-HH---HHHhhhhhHhhhhHH-hcCCc---ccccch
Confidence 3444444443 346788999999997 89999887765432 22 222232221111111 01100 000000
Q ss_pred h--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhh-hhhhhhhHHHHHHHhh
Q 012495 107 G--PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKR-FYPLFGLGANVALIFS 167 (462)
Q Consensus 107 ~--~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR-~fgli~ag~~lG~i~g 167 (462)
+ -+.+...| +-.+-++++..- .=++..|.+..+|.++ .....+.-.++|.++|
T Consensus 140 rai~~~~lg~~-------LLD~A~n~~qgp-~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG 195 (498)
T KOG0637|consen 140 RAIVLFILGFW-------LLDVANNTLQGP-CRALLADLARGDAKKTRANSVFSFFMAVGNVLG 195 (498)
T ss_pred HHHHHHHHHhH-------HHHhhhhhhhhh-HHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence 1 01112222 334556566663 8899999999887777 6666666666666654
No 229
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=79.83 E-value=15 Score=39.09 Aligned_cols=106 Identities=8% Similarity=-0.017 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHH
Q 012495 41 PMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120 (462)
Q Consensus 41 ~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~f 120 (462)
..+++.+.+-..+.||+|||+++..+..++.++..+++.... ..+ .|+. .... ...+.....
T Consensus 340 ~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~-~~~-~~~~----------~~~~------~~~~~~~~~ 401 (513)
T KOG0254|consen 340 VVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGV-FAL-YYPN----------SSKG------AGWLAIVFL 401 (513)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHH-Hhc-cCCC----------cccc------hhHHHHHHH
Confidence 445555555579999999999999999999999998887532 111 0000 0000 112222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHH
Q 012495 121 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALI 165 (462)
Q Consensus 121 yv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i 165 (462)
.+....++...-+ +-|...+|+++.+=+.+..++..+...+...
T Consensus 402 ~~~v~~f~~g~g~-v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~ 445 (513)
T KOG0254|consen 402 CLFIFSFAIGWGP-VPWVIVSEIFPLRLRSKGASLAVAVNWLWNF 445 (513)
T ss_pred HHHHHHHhccccc-chhhhhhccCcHhHHhhhHHHHHHHHHHHHH
Confidence 3333344434556 5899999999999998887776665544433
No 230
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=78.57 E-value=69 Score=34.29 Aligned_cols=97 Identities=9% Similarity=0.070 Sum_probs=59.4
Q ss_pred HHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHHHHHHHHHHHHHhhhhhcccc
Q 012495 298 FTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDP 377 (462)
Q Consensus 298 l~q~~l~~~li~r~G~~~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~~v~~g~~~~~~~k~~~ysl~~p 377 (462)
.+..+..+.+.+|+|-|..+.+.-+. .++.-+.+.+.+ .+ ..+ .+.+++.-..+=..+ .
T Consensus 76 al~qIp~GlLaDrlG~K~vL~l~~l~---Wsl~t~L~~fa~-----Sl-----~~L-------~i~R~llGvaEA~~~-A 134 (511)
T TIGR00806 76 LAVLVPVFLLTDYLRYKPVLVLQALS---FVCVWLLLLLGT-----SV-----WHM-------QLMEVFYSVTMAARI-A 134 (511)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHH---HHHHHHHHHHHH-----HH-----HHH-------HHHHHHHHHHHHHHH-H
Confidence 33456688999999999987655553 222222222211 00 000 012333333343444 6
Q ss_pred chhhccccCCchhhhccceeeeeecccchhhHHHHHHHH
Q 012495 378 CKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQF 416 (462)
Q Consensus 378 ~ke~l~~~l~~~~r~k~K~~iD~l~~r~Gk~~gs~i~~~ 416 (462)
....++.-.|+++|.+.-+.. ..+..+|+.+|+.+.+.
T Consensus 135 ~~syI~~WfP~kER~ratsi~-~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 135 YSSYIFSLVPPSRYQRAAAYS-RAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 778889999999999887765 56778899998888887
No 231
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=77.54 E-value=71 Score=30.87 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=66.6
Q ss_pred hccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchH
Q 012495 14 DTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQAL 93 (462)
Q Consensus 14 ~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~ 93 (462)
.+|+.+-.+ .+++..+-...-.-. -+...-|.+.||+|++.++.+.-..-...|....+.. .+.+++
T Consensus 27 ~Lk~~l~~s-----q~~l~~l~~~~~~G~--~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~---~~~i~~--- 93 (250)
T PF06813_consen 27 QLKSRLGYS-----QSQLNTLSTAGDIGS--YFGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV---SGRIPS--- 93 (250)
T ss_pred HHHHHhCCC-----HHHHHHHHHHHHHHh--hccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---hCccCc---
Confidence 355554444 467777777665444 3577889999999999988777665555555555432 111110
Q ss_pred HHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHh
Q 012495 94 ADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSV-VISVLFWGFANQITTVDEAKRFYPLFGLGANVALIF 166 (462)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~-~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~ 166 (462)
...|...++....+.-+.. ..+ .-.-..+.|| ++|.+.-|+.-...+++.-+
T Consensus 94 ------------------~~~~~~~~~~~l~~~s~~~~~ta--~lvt~~~NFP-~~RG~vvgilk~~~GLSaai 146 (250)
T PF06813_consen 94 ------------------LPVWLMCLFLFLGGNSSCWFNTA--SLVTCVRNFP-RSRGTVVGILKGFFGLSAAI 146 (250)
T ss_pred ------------------cchHHHHHHHHHHcccHHHhhhH--HHHHHHHhCc-cccCceehhhhHHHHhHHHH
Confidence 1356655444443222111 111 1111224565 67777777777777766554
No 232
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=76.32 E-value=51 Score=34.15 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHHHHHHHHHHHHHh
Q 012495 290 STATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKS 369 (462)
Q Consensus 290 ~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~~v~~g~~~~~~~k~ 369 (462)
....++..++..-..|.+.+++|=|.++++.-+. +.+........+ .+ +.++ .++..--.
T Consensus 74 GSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~---va~s~ll~~~S~--------------~F-~afv--~aR~l~Gi 133 (451)
T KOG2615|consen 74 GSSFSILQFISSPLWGCLSDRYGRKPVLLACLIG---VALSYLLWALSR--------------NF-AAFV--LARFLGGI 133 (451)
T ss_pred hhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHH---HHHHHHHHHHHH--------------HH-HHHH--HHHHhhhh
Confidence 3444444444455677999999999888765552 222221111111 11 0111 01222222
Q ss_pred hhhhccccchhhccccCCchhhhccceeee---eecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 012495 370 AKYSLFDPCKEMAYIPLDEDTKVKGKAAID---VVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGDTFGDCSCMVR 444 (462)
Q Consensus 370 ~~ysl~~p~ke~l~~~l~~~~r~k~K~~iD---~l~~r~Gk~~gs~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~ 444 (462)
.| ..-.+++-.+---.++|+|.++-+.+. ++|-.+|+++|+.+.++. ...+++....|.+...++.+.-.|+.
T Consensus 134 ~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~-~~~g~~p~alP~~~v~i~a~~~v~~~ 209 (451)
T KOG2615|consen 134 FK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFS-SISGSYPFALPCLLVFILAAGDVTFF 209 (451)
T ss_pred cc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhH-hhhccCchHHHHHHHHHHHHHHHHHH
Confidence 22 233455666666677788888777776 578899999999988733 34444555566544444444434443
No 233
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=75.83 E-value=8 Score=41.48 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=83.3
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhchhHHHH
Q 012495 240 FLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFGWGVAAK 318 (462)
Q Consensus 240 ~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G~~~~~~ 318 (462)
.++.|+.+..++......+....++....--..++.- ..+ ..+| +-.+.+-.+ +...++..++++++|=.++..
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~-~~~---~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~ 440 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLG-GIK---TLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMY 440 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcC-Ccc---eeee-ehhhhhccchHHHHHHHHHHHHHhcccceee
Confidence 4556666555555555555555555555555555543 222 3334 223344444 446788889999999766655
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHHHHHHH-HHHHHHhhhhhccccchhhccccCCchhhhcccee
Q 012495 319 ITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAM-QNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAA 397 (462)
Q Consensus 319 i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~~~v~~g~~-~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k~K~~ 397 (462)
..-.+ ...=|..+....+++... | ++++=|+. .-+=..+..| +-.-.||+.|..+++.
T Consensus 441 lgLa~---~~~Rf~~~S~L~n~W~vL-------P--ieilqgit~aliWaa~~sY---------~s~vaPp~l~at~Q~l 499 (618)
T KOG3762|consen 441 LGLAC---NVGRFLYYSYLQNPWMVL-------P--IEILQGITHALIWAAIISY---------ASHVAPPGLRATAQGL 499 (618)
T ss_pred ehhhH---HHHHHHHHHHhcCchhee-------e--HHHHHHHHHHHHHHHHHHH---------HHhhCCCcchHHHHHH
Confidence 44442 334444455555544321 1 11111110 0000111122 2334578888888888
Q ss_pred eeeecccchhhHHHHHHHHHHHHh
Q 012495 398 IDVVCNPLGKSGGALIQQFMILTF 421 (462)
Q Consensus 398 iD~l~~r~Gk~~gs~i~~~l~~~~ 421 (462)
..+...=+||+.||+|...+.-.+
T Consensus 500 ~~g~f~GlG~g~GslIGG~~v~~f 523 (618)
T KOG3762|consen 500 LQGIFHGLGKGLGSLIGGFVVERF 523 (618)
T ss_pred HHHHhcccCcchhhhhhhhhheee
Confidence 888888888888888876554444
No 234
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=74.35 E-value=95 Score=30.77 Aligned_cols=53 Identities=17% Similarity=0.021 Sum_probs=37.2
Q ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHH
Q 012495 22 TAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGF 79 (462)
Q Consensus 22 ~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~ 79 (462)
+.+|-+..+|+-++.+.. ..++++.-+.|.|.|+-||++-- ..|.+.|.+-..
T Consensus 65 stYgFgkG~IgqLfiaGf-gSsmLFGtivgSLaDkqGRKrac----vtycitYiLsCi 117 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGF-GSSMLFGTIVGSLADKQGRKRAC----VTYCITYILSCI 117 (454)
T ss_pred hhcCccCCccceeeeccc-chHHHHHHHHHHHHhhhccccce----eeehHHHHHHHH
Confidence 334444556888888765 57789999999999999999963 334455555543
No 235
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=73.98 E-value=1.5e+02 Score=32.93 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcc-cCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhh-HHHHHHH
Q 012495 45 GFMLLYTKLADK-LSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIW-SFCLFYV 122 (462)
Q Consensus 45 ~~~~~~~~L~~r-~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w-~~~~fyv 122 (462)
+...+-|.+.|+ +||++.+.+......+.+.+.++-..|. ..|+. ... .+...++
T Consensus 38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~--~~~~~---------------------~~~~~l~gLaL 94 (654)
T TIGR00926 38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPS--SGHPL---------------------HDLLDLLGLAL 94 (654)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc--cccch---------------------HHHHHHHHHHH
Confidence 344445566677 9999887776665555554444311100 00000 000 1223344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCChhh---hhhhhhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 123 MAELWGSVVISVLFWGFANQITTVDE---AKRFYPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 123 ~~el~~~~~~s~lfwa~~ndi~~~~q---akR~fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
++.-.| ..-+ -+=++..|-++++| ..++|.+...+.|+|.+++..++.++.+
T Consensus 95 ia~G~G-giKp-~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~ 149 (654)
T TIGR00926 95 IALGTG-GIKP-CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG 149 (654)
T ss_pred HHhhcc-cccc-CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 3445 47778888888654 5678999999999999999888887653
No 236
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=73.66 E-value=1.2e+02 Score=31.59 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=33.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIA 72 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~ 72 (462)
.-+.|++......-| .+-+..+|..+|++|||+.+..+..+..+
T Consensus 112 ~~q~~llt~~v~~gm-llga~~w~l~~d~~grr~~f~~T~l~t~v 155 (528)
T KOG0253|consen 112 EGQAPLLTLSVFLGM-LVGAMVWGLSADTIGRRKGFNLTFLVTGV 155 (528)
T ss_pred hhhhhHHHHHHHhhh-hhhhhhhheehhhhhcchhhhhhHHHHHH
Confidence 346788877655545 57788999999999999999877654433
No 237
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=73.25 E-value=1.4e+02 Score=32.18 Aligned_cols=27 Identities=26% Similarity=0.595 Sum_probs=15.9
Q ss_pred HHHHHhhHHHHHHhc---hhHH----HHHHHHHH
Q 012495 298 FTMMLLSQFVFDKFG---WGVA----AKITPTVL 324 (462)
Q Consensus 298 l~q~~l~~~li~r~G---~~~~----~~i~P~~~ 324 (462)
.+-+..++|+.+.+| |+.. ..+.|..+
T Consensus 311 ~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~ 344 (521)
T PF02990_consen 311 FIAGYVSARLYKSFGGKKWKKNSILTSLLFPGIL 344 (521)
T ss_pred hHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHH
Confidence 345677778888765 4443 34555543
No 238
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=71.29 E-value=25 Score=36.82 Aligned_cols=128 Identities=16% Similarity=0.113 Sum_probs=79.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
++.++.+..... .+.++...+|++...+.+-|+++..+...-.... ++-.++. .+-| ...+..
T Consensus 254 ~~f~~~~~~vg~-~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~-l~~~~lv-----~~~n-------~~~Gi~--- 316 (433)
T PF03092_consen 254 PSFYGTLSIVGS-IASLLGILLYRKYFSNWSWRRIFVVTTLVSVLAS-LFDLLLV-----TRWN-------LDLGIP--- 316 (433)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cccEEEE-----EEEe-------eeeCcC---
Confidence 556777776554 5667888999999999999999866654332211 1111110 0000 000000
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhh
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLR 178 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~ 178 (462)
+.|....--+..|+-+.+..- -.-..++++||+..-.-.|+++....|+|..+++.++..+.+..
T Consensus 317 -----d~~f~lgd~~l~~~~~~i~~m-P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 317 -----DQWFALGDTILEEVIGMIAFM-PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred -----CeEEEEEhHHHHHHHHHHHHH-HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 011111111344454444333 25567999999999999999999999999999999998887654
No 239
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=70.24 E-value=93 Score=32.60 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=65.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhccc--CchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCc
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKL--SKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRF 105 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~--~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~ 105 (462)
.++..+....+... .+.-+.+.|++|||. |||.... +.+.+... ++++.+. +.|+
T Consensus 287 ~~~a~~a~~lfE~a-gl~G~Ll~GwlSDklfkgrR~p~~--~i~~~~i~--~~~~~~w----~~~~-------------- 343 (448)
T COG2271 287 LVKANWAISLFEVA-GLPGTLLAGWLSDKLFKGRRGPMA--LIFMLLIT--ASLVLYW----LAPN-------------- 343 (448)
T ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcccccchHH--HHHHHHHH--HHHHHHH----cCCC--------------
Confidence 55667777766653 367888999999995 4554432 22222221 1222221 1222
Q ss_pred chhhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH-HHHhhhhhHHHhh
Q 012495 106 LGPLAIMRIWSFCLFYVMAEL--WGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV-ALIFSGRTVKYFS 175 (462)
Q Consensus 106 ~~~i~~~~~w~~~~fyv~~el--~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l-G~i~gg~~~~~l~ 175 (462)
.+.|....+....+. +|- . .+.=--+.|..+.+-+.-.-|+.|..+-+ |...++...+...
T Consensus 344 ------~~~~l~~~~l~~iGf~IyGP--q-mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~ 407 (448)
T COG2271 344 ------GSYLLDAILLFIIGFLIYGP--Q-MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA 407 (448)
T ss_pred ------ccHHHHHHHHHHHHHHHhhH--H-HHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE
Confidence 122333222222222 221 1 13445688999999999999999998888 8887776665543
No 240
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=64.59 E-value=1.8e+02 Score=30.03 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=75.0
Q ss_pred chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcc-cCchhHHHHHHHHHHHHHHHHHHH
Q 012495 2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADK-LSKQALFYTVIVPFIAFFGAFGFL 80 (462)
Q Consensus 2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r-~~r~~v~~~~l~~f~~~~~lf~~~ 80 (462)
|-+..+.||++.-=.+.+..++ |-++++-+.+-.+.. .+|.......-.+.+| -++|+........+.+.+. |+.
T Consensus 217 mGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~-l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~--G~~ 292 (395)
T COG2807 217 MGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQ-LAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLV--GLL 292 (395)
T ss_pred HHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH--HHH
Confidence 4456788999999999999884 666777777666544 3455555555566664 5566666555555555443 332
Q ss_pred HhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhhhhhhhhhhhhH
Q 012495 81 LYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITT-VDEAKRFYPLFGLG 159 (462)
Q Consensus 81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~-~~qakR~fgli~ag 159 (462)
.. |.. . .-.|. .+..--+| ..++ +...+++|.++ ++|+.|+= +.+
T Consensus 293 ~~-------P~~------------~------~~lw~----~llG~G~G-~~F~-laL~li~~rs~~a~~Aa~LS---gma 338 (395)
T COG2807 293 LA-------PGQ------------L------PILWA----LLLGLGQG-GAFP-LALTLILLRSSDAAIAAALS---GMA 338 (395)
T ss_pred Hh-------hhh------------H------HHHHH----HHHhCccc-hHHH-HHHHHHHhhcCChHHHHHHH---HHh
Confidence 22 210 0 01231 12222233 5677 47788888775 56666654 456
Q ss_pred HHHHHHhhh
Q 012495 160 ANVALIFSG 168 (462)
Q Consensus 160 ~~lG~i~gg 168 (462)
.++|-++++
T Consensus 339 Qg~GYllAa 347 (395)
T COG2807 339 QGVGYLLAA 347 (395)
T ss_pred hhhhHHHHh
Confidence 666666654
No 241
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=63.64 E-value=8 Score=39.80 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHH
Q 012495 44 IGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVM 123 (462)
Q Consensus 44 ~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~ 123 (462)
|--..+-+++.||+|||+-+-..+..|.++.++...- .+++. ...|. ..
T Consensus 395 fPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c-------~~rn~-------------------~tvll-----f~ 443 (528)
T KOG0253|consen 395 FPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC-------KTRNA-------------------YTVLL-----FT 443 (528)
T ss_pred CCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh-------cCcch-------------------hHHHH-----HH
Confidence 3334456788999999998877776665543322211 11110 01122 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhH
Q 012495 124 AELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTV 171 (462)
Q Consensus 124 ~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~ 171 (462)
+..+.+.... ....|.-|++|..-|.-..|.-+..+-+|+|+.+.+.
T Consensus 444 arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 444 ARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred HHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 2333344455 3677999999999999999999999999999988776
No 242
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=63.63 E-value=62 Score=28.86 Aligned_cols=73 Identities=14% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHH-HHHHHhhHHHHHHhchhHHHHHHHHHHHHH
Q 012495 252 TLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIAT-FTMMLLSQFVFDKFGWGVAAKITPTVLLLT 327 (462)
Q Consensus 252 ~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~-l~q~~l~~~li~r~G~~~~~~i~P~~~l~~ 327 (462)
.+...|+...++.|...+..-++.-.+-++...+ ....+--.. .+--+++|.+++++|.|+++.+.-+...+.
T Consensus 7 ~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~---~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y 80 (156)
T PF05978_consen 7 FLFTAFQTQSFIQESVIHSVHERNPSSISAGLGY---YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIY 80 (156)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhcCcccccccccH---HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444566777777777666544321111233333 322222222 223456899999999999998777754433
No 243
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.58 E-value=2.1e+02 Score=30.43 Aligned_cols=150 Identities=10% Similarity=0.156 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHH
Q 012495 120 FYVMAELWGSVVISVLFWGFANQI-TTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSI 198 (462)
Q Consensus 120 fyv~~el~~~~~~s~lfwa~~ndi-~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~ 198 (462)
+++..++.-+.-.+. +-..+.-. ...+.-.+..++-+.+.++|.+++|...+.+++..+..|- . ..+
T Consensus 248 ~f~~tG~~~Sf~~~i-ypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~--~-------~~~-- 315 (461)
T KOG3098|consen 248 FFFYTGLETSFWISI-YPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGR--K-------PTV-- 315 (461)
T ss_pred HHHHHHHHHHHHHhc-cchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc--C-------cch--
Confidence 344444444344442 33333333 4556677888999999999999999999999876654441 0 111
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 012495 199 VVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPS 278 (462)
Q Consensus 199 ~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~ 278 (462)
.+...+......... ...|.+.+.+..+... ..+..++ ....+..+++++.-..++.+-.......+++
T Consensus 316 -~~~~~~~~~~~~li~--l~~p~dap~~~t~~~~-------~~~~~~~-~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~ 384 (461)
T KOG3098|consen 316 -LIGIIIHLIGFLLIH--LSFPNDAPLRPTDSPP-------LLFTPSY-YLALIIGFLLGFGDACFNTQRYVIIALLYPD 384 (461)
T ss_pred -hHHHHHHHHHHHHHh--ccccccCCCCCCcccc-------cccccch-hHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 111111111111111 1224332211111111 1222332 2344455667888888999988889988854
Q ss_pred hh-hhhhHHhhHHHH
Q 012495 279 PN-EYSSFMGDFSTA 292 (462)
Q Consensus 279 ~~-~~~~f~g~~~~~ 292 (462)
+. +.-+.+..++..
T Consensus 385 ~~~~~fsi~kfyq~~ 399 (461)
T KOG3098|consen 385 DRAQAFSLFKFYQSV 399 (461)
T ss_pred chHHHHHHHHHHHHH
Confidence 43 444444444433
No 244
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=58.37 E-value=2.6e+02 Score=29.82 Aligned_cols=122 Identities=12% Similarity=-0.023 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhcccCc-hhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHH
Q 012495 41 PMAIGFMLLYTKLADKLSK-QALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCL 119 (462)
Q Consensus 41 ~~~~~~~~~~~~L~~r~~r-~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~ 119 (462)
..+++.+.+.-++.+|+|+ |++...+...++.++....++-... +..++. |++....++. .+..|...+
T Consensus 316 ~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~-~~~~~~---~~~~~~~~~~------~~~~~~~l~ 385 (477)
T TIGR01301 316 VVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVA-KNSRYY---DGDGESLPPP------TGIKASALI 385 (477)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhh-hccccc---cccccccCcc------hhhHHHHHH
Confidence 4445677788888999985 5665667666666665555432100 000010 0000001111 112356666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhhh--hhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 120 FYVMAELWGSVVISVLFWGFANQITTVDEA--KRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 120 fyv~~el~~~~~~s~lfwa~~ndi~~~~qa--kR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
.+...++--....+ .=++++++..+.+++ .-..|+++...-+..++.+...+.
T Consensus 386 ~~~~~Gi~~A~~~s-iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 386 VFAILGIPLAITYS-IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred HHHHhhHHHHHHHH-HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 66777775556777 588899998885544 668899999999999988876655
No 245
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=58.05 E-value=99 Score=24.98 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 012495 253 LVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPT 322 (462)
Q Consensus 253 ~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~ 322 (462)
..+..++.....+......+.+.+++ +++....+..+...++...+-..+.+.+.+..||+....+...
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPP-EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAI 125 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCCh-hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHH
Confidence 34445555555666666666666543 4555666655555555554445566777888898876655544
No 246
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=57.26 E-value=2.2e+02 Score=28.66 Aligned_cols=178 Identities=12% Similarity=0.017 Sum_probs=92.5
Q ss_pred HHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 012495 136 FWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMM-SIVVLMGLSICGLYWWVN 214 (462)
Q Consensus 136 fwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~-~~~~~~g~l~l~~~~~~~ 214 (462)
--.|+.--++-+|-.-.||+....+-+|...--.++.++.+..++.=|+.++-...+-.+. .........|....-++.
T Consensus 157 QN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D 236 (459)
T KOG4686|consen 157 QNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSD 236 (459)
T ss_pred hcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456777888899999999999888888887666677766655544454433211110100 001111222222222222
Q ss_pred hh----cCCCccccccccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHH
Q 012495 215 NN----VELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFS 290 (462)
Q Consensus 215 ~~----~~~p~~~~~~~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~ 290 (462)
+. .++.|.. ..+.+|..-...+ +|-...+..+-++|.++.-=+...-+..-.++|.-.+ .--+.++
T Consensus 237 ~rAerilh~e~g~--~Ge~pkLtdv~~f-----~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~---~~a~~i~ 306 (459)
T KOG4686|consen 237 DRAERILHLEEGF--LGEEPKLTDVNTF-----YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSA---VSAGNIL 306 (459)
T ss_pred hHHHHHHhhhcCc--ccCCccccccccc-----CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCCh---hhccchh
Confidence 11 1111110 0111221111111 3446666666677776664444445556666776443 1224456
Q ss_pred HHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH
Q 012495 291 TATGIATFTMMLLSQFVFDKFGWGVAAKITPTV 323 (462)
Q Consensus 291 ~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~ 323 (462)
+.+-..+.+..-+.+.++++.|-.........+
T Consensus 307 s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~ 339 (459)
T KOG4686|consen 307 STVYGISAVLSPVFGAISDKYGFNLWWVASACI 339 (459)
T ss_pred hhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence 566555655556678889999977666555554
No 247
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=55.46 E-value=59 Score=32.87 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCh--hhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHH
Q 012495 259 ISINLVEVTWKSKLKAQFPSP--NEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLL 325 (462)
Q Consensus 259 ~~~~l~e~~~~~~~~~~~~~~--~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~~i~P~~~l 325 (462)
+....+...-.....++|+++ +++.+++..++..+|+-+++-....+.+-++.||...-.+.-+.++
T Consensus 45 ~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 45 VGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML 113 (372)
T ss_dssp HHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred hccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence 334447888888889999754 5888898889999999998777888899999999998766555443
No 248
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=54.81 E-value=1e+02 Score=32.67 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=84.1
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCC
Q 012495 24 KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGP 103 (462)
Q Consensus 24 ~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~ 103 (462)
+|-+.++..+++++...+...--...+..+...++-+++....+..-....+.+++.-
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~---------------------- 329 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT---------------------- 329 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc----------------------
Confidence 4444778887777666555444445555777788888888778777788888887741
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 104 RFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 104 ~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
+.|....-.+...+-. .+.+ ..=+++.-..+.||..+.+++++...++..++++.+-...
T Consensus 330 ---------~~w~~~~~~v~~~~~~-~~~p-a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 330 ---------ETWMMFAAGVVVALAG-IVFP-AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred ---------cchhhhHHHHHHHhhc-chhH-HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 3454444444444443 4555 4788999999999999999999999999999988765443
No 249
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.21 E-value=42 Score=35.98 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhhhccccchhhccccCCchhhhccceeeee
Q 012495 356 AVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDV 400 (462)
Q Consensus 356 ~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k~K~~iD~ 400 (462)
..++|. .+..| |-...+|.|..=--+--||++...|.+--.
T Consensus 449 Lsf~G~--y~g~k--k~~~e~PvrTNqIpRqIP~q~~y~~~~~~i 489 (628)
T KOG1278|consen 449 LSFVGG--YFGFK--KPAIEHPVRTNQIPRQIPEQPWYLNPIPSI 489 (628)
T ss_pred HHHhhH--Hhhcc--CCCCCCCcccCCCcccCCCCccccchhhHH
Confidence 345554 34444 335578888765555557888887754433
No 250
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=47.95 E-value=3.7e+02 Score=28.56 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 012495 29 EIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIV 68 (462)
Q Consensus 29 ~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~ 68 (462)
+..-|+-+.+. +..+.+...-.|+.|++|-|.-..+...
T Consensus 79 ~~~~wlsmIym-~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 79 SAADWLSMIYM-VVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred HHHHHHHHHHH-HHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 44556666554 4557788888999999999987665543
No 251
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=44.26 E-value=4.3e+02 Score=28.27 Aligned_cols=74 Identities=16% Similarity=0.079 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHh-chhHHHHHHHHH
Q 012495 247 IRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKF-GWGVAAKITPTV 323 (462)
Q Consensus 247 l~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~-G~~~~~~i~P~~ 323 (462)
+..++...+.-..+...+......+..+..+.+++.... +....+....+-..+.+++.+|+ |-|++..+.-+.
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~---i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYE---LFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 333333333333334334444444545444444422222 22222233322355678999998 999987766664
No 252
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=33.39 E-value=1.6e+02 Score=30.64 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHH
Q 012495 113 RIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKY 173 (462)
Q Consensus 113 ~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~ 173 (462)
+.|...+.=.+.|+.|..+..= -...+.|-.++|||.--.+..+.+.+.|..++|.+...
T Consensus 334 si~ivf~lif~eGLlGGa~YVN-tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVN-TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555555555566666555552 34455666789999999999999999999998876643
No 253
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=31.58 E-value=2.4e+02 Score=29.88 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=73.6
Q ss_pred HHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCc--------hhHHHHHHHH-HHHHHHHH
Q 012495 7 FNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSK--------QALFYTVIVP-FIAFFGAF 77 (462)
Q Consensus 7 ~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r--------~~v~~~~l~~-f~~~~~lf 77 (462)
.++.++-.-.|+++-+-.|-+.++-+++-+.=.+.+ +++..+.|.++||.-+ ||++..+-.. -++++...
T Consensus 272 ~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~-~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l 350 (466)
T KOG2532|consen 272 WGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAM-AIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVL 350 (466)
T ss_pred HHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHH-HHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHee
Confidence 334444443344433222222455566665444333 6788999999999755 3333322111 11111111
Q ss_pred HHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-Chhhhhhhhhhh
Q 012495 78 GFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQIT-TVDEAKRFYPLF 156 (462)
Q Consensus 78 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~-~~~qakR~fgli 156 (462)
++ .+.+ +.|....++.++.....+..+= | +.|..- .++-+.-.++..
T Consensus 351 ~~--------~~~~---------------------~~~~a~~~l~~~~~~~g~~~~G-f--~~~~~~~apq~a~~l~g~~ 398 (466)
T KOG2532|consen 351 AF--------TSDE---------------------HRLLAVILLTIAIGLSGFNISG-F--YKNHQDIAPQHAGFVMGII 398 (466)
T ss_pred ee--------cCCC---------------------cchHHHHHHHHHHHHcccchhh-h--HhhhhhccchHHHHHHHHH
Confidence 11 1111 2345556666655554444442 3 334444 677788888888
Q ss_pred hhHHHHHHHhhhhhHHHhh
Q 012495 157 GLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 157 ~ag~~lG~i~gg~~~~~l~ 175 (462)
+..++++.++++.+++.+.
T Consensus 399 ~~~~~~~~~~~P~~vg~~~ 417 (466)
T KOG2532|consen 399 NFVGALAGFIAPLLVGIIV 417 (466)
T ss_pred HHHHHHHHHHHHHheeeEe
Confidence 8899999999888887765
No 254
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.50 E-value=6.6e+02 Score=25.75 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=28.2
Q ss_pred CCCChHHHHHHHhhcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh
Q 012495 230 PKMGTMESLKFLVSSRYI----RDLATLVVAYGISINLVEVTWKSKLKAQFPSPN 280 (462)
Q Consensus 230 ~~~~~~~~l~~i~~s~yl----~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~ 280 (462)
+|.|+.+|+|.+++-+-+ ..+.=+++...++.-.+..-+....+....++.
T Consensus 126 ~kinP~~G~KRiFs~~~~vEllKsllKi~~v~~v~~~~l~~~~~~l~~l~~~~~~ 180 (363)
T COG1377 126 SKLNPIKGLKRIFSLQTLVELLKSLLKIVLVGLVAYFVLKNHLSELLSLAGQSPV 180 (363)
T ss_pred cccChhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHH
Confidence 457899999999988853 334333443333333344444444444434443
No 255
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=24.98 E-value=1.2e+02 Score=33.43 Aligned_cols=66 Identities=20% Similarity=0.028 Sum_probs=41.7
Q ss_pred hhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccC--chhHHHHHHHHHHHHHHHH
Q 012495 12 LRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLS--KQALFYTVIVPFIAFFGAF 77 (462)
Q Consensus 12 lr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~--r~~v~~~~l~~f~~~~~lf 77 (462)
.-..-+..+.+.+|-++++.+++.....++..++..++-|+++||++ .|+..........+..+++
T Consensus 349 ~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 416 (633)
T TIGR00805 349 YITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLC 416 (633)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455446677777765555555678899999999988 4566666665555554443
No 256
>TIGR02871 spore_ylbJ sporulation integral membrane protein YlbJ. Members of this protein family are found exclusively in Firmicutes (low-GC Gram-positive bacterial) and are known from studies in Bacillus subtilis to be part of the sigma-E regulon. Mutation leads to a sporulation defect, confirming that members of this protein family, YlbJ, are sporulation proteins. This protein appears to be universal among endospore-forming bacteria, but is encoded by a pair ORFs distant from eash other in Symbiobacterium thermophilum IAM14863.
Probab=24.34 E-value=7.8e+02 Score=25.21 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=27.4
Q ss_pred HHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHh
Q 012495 136 FWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYF 174 (462)
Q Consensus 136 fwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l 174 (462)
.-.|=++..|.+|+.|+...-+-. +-.+++|...++.+
T Consensus 98 ~~ly~~g~it~~Ea~~Ll~f~nns-sPlFiig~V~~~~l 135 (362)
T TIGR02871 98 ADLYEEKLITFEEAERLLNFANNS-GPLFIIGAVGTSML 135 (362)
T ss_pred HHHHHCCCCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHh
Confidence 445778889999999998887765 44566666655554
No 257
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=23.76 E-value=7.8e+02 Score=25.03 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.6
Q ss_pred CCCChHHHHHHHhhcHHH
Q 012495 230 PKMGTMESLKFLVSSRYI 247 (462)
Q Consensus 230 ~~~~~~~~l~~i~~s~yl 247 (462)
++.|+.+|+|.+++-+-+
T Consensus 119 ~rlNP~~GlKriFs~~~l 136 (349)
T PRK12721 119 EKINPVSNAKQIFSLKSV 136 (349)
T ss_pred hhcCHhHhHHHhcCHHHH
Confidence 457999999999988764
No 258
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.16 E-value=1.1e+03 Score=28.72 Aligned_cols=16 Identities=6% Similarity=0.239 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHH
Q 012495 113 RIWSFCLFYVMAELWG 128 (462)
Q Consensus 113 ~~w~~~~fyv~~el~~ 128 (462)
..|+..++|.+.|+.+
T Consensus 68 GA~LAD~L~~LFGl~A 83 (1355)
T PRK10263 68 GAWLADTLFFIFGVMA 83 (1355)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 4566666666666554
No 259
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.92 E-value=1.1e+02 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.039 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhhh---cccccccc
Q 012495 431 LGGDTFGDCSCMVRSSQVF---RYPIYSFA 457 (462)
Q Consensus 431 ~~~~~~~~~~~Wi~~~~~~---~~~~~~~~ 457 (462)
+..+++.++++|..+-.|= |.|||.=-
T Consensus 40 I~~iFil~VilwfvCC~kRkrsRrPIYrPv 69 (94)
T PF05393_consen 40 ICGIFILLVILWFVCCKKRKRSRRPIYRPV 69 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 4456677788888876554 48999643
No 260
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=21.16 E-value=6.4e+02 Score=23.06 Aligned_cols=35 Identities=9% Similarity=0.057 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 012495 38 VNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIA 72 (462)
Q Consensus 38 ~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~ 72 (462)
......++..|.|--+.+|.+|+=.+.+......+
T Consensus 38 ~p~i~al~~g~vyml~~~KV~K~G~~~i~~~i~gl 72 (189)
T TIGR02185 38 SPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGL 72 (189)
T ss_pred HHHHHHHHHhHHHhhhhhhcCCccHHHHHHHHHHH
Confidence 34456678889999999999988766544443333
No 261
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.95 E-value=1e+03 Score=25.39 Aligned_cols=37 Identities=14% Similarity=0.028 Sum_probs=21.9
Q ss_pred HHHHHHHhhCChhh-hhhhhhhhhhHHHHHHHhhhhhH
Q 012495 135 LFWGFANQITTVDE-AKRFYPLFGLGANVALIFSGRTV 171 (462)
Q Consensus 135 lfwa~~ndi~~~~q-akR~fgli~ag~~lG~i~gg~~~ 171 (462)
..++-.++.++..+ +-.....+..+.+.+.+++|.+-
T Consensus 387 ~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~ 424 (495)
T KOG2533|consen 387 IALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF 424 (495)
T ss_pred HHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc
Confidence 46666777775332 22344555567777777766554
Done!