Query 012495
Match_columns 462
No_of_seqs 152 out of 556
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.7 2.9E-13 9.8E-18 138.0 33.7 282 3-323 36-334 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.6 2.6E-12 8.9E-17 131.2 29.2 254 28-323 61-329 (451)
3 2gfp_A EMRD, multidrug resista 99.4 2.8E-12 9.7E-17 128.2 13.7 255 3-313 10-264 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.2 8.3E-10 2.9E-14 114.3 22.5 140 4-176 24-171 (491)
5 2cfq_A Lactose permease; trans 99.1 2.5E-09 8.6E-14 109.1 17.3 276 3-322 17-297 (417)
6 4gc0_A D-xylose-proton symport 98.8 1.5E-06 5.1E-11 89.6 24.9 130 31-176 57-187 (491)
7 2xut_A Proton/peptide symporte 98.3 7.2E-06 2.5E-10 85.3 15.2 141 3-175 22-172 (524)
8 1pw4_A Glycerol-3-phosphate tr 97.8 0.00025 8.6E-09 71.5 15.5 142 4-176 263-408 (451)
9 2cfq_A Lactose permease; trans 97.7 0.00033 1.1E-08 70.9 12.9 114 29-175 259-373 (417)
10 4gc0_A D-xylose-proton symport 97.5 0.0023 7.7E-08 65.5 16.0 108 41-175 323-430 (491)
11 4aps_A DI-OR tripeptide H+ sym 97.2 0.0015 5.1E-08 66.9 10.6 122 30-175 320-446 (491)
12 3o7q_A L-fucose-proton symport 96.7 0.0086 3E-07 59.9 11.6 133 8-176 273-406 (438)
13 2gfp_A EMRD, multidrug resista 95.5 0.018 6.2E-07 56.4 6.4 139 5-174 211-349 (375)
14 2xut_A Proton/peptide symporte 92.0 0.26 9E-06 50.4 7.4 60 115-175 406-465 (524)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.65 E-value=2.9e-13 Score=137.95 Aligned_cols=282 Identities=9% Similarity=-0.068 Sum_probs=183.8
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY 82 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~ 82 (462)
|+..+.++..-|+.+.+. +++|-+.++++++.....+ ...+..|..|+++||+|||+++......+++..++++....
T Consensus 36 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~-~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 113 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQ-QAFTLTNFQAGLIQSAFYF-GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE 113 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHH-HHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHH-HHcCCCHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc
Confidence 344455566666666544 3366667889999987765 44689999999999999999999988888877766643210
Q ss_pred hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
. .+.|...+.+++.++......+ ...++++|.+++||+.+.+++...+.++
T Consensus 114 ------~----------------------~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 114 ------I----------------------MNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp ------T----------------------TCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred ------c----------------------ccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 0 1457777778888887767777 5899999999999999999999999999
Q ss_pred HHHhhhhhHHHhhhhhccCCCCCc------------hhHHH-H-HHHHHHHHHHHHHHHHH-HHHHhhhcCCCcccccc-
Q 012495 163 ALIFSGRTVKYFSNLRKNLGPGVD------------GWAVS-L-KGMMSIVVLMGLSICGL-YWWVNNNVELPTRSKKK- 226 (462)
Q Consensus 163 G~i~gg~~~~~l~~~~~~~gp~~~------------~~~~~-~-~~l~~~~~~~g~l~l~~-~~~~~~~~~~p~~~~~~- 226 (462)
|.++|+.+...+.... .++..+ +|... . .....+ .+.+...+.. ..... ...||+++++
T Consensus 165 g~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~--~~~p~~~~~~~ 239 (438)
T 3o7q_A 165 GAIIAVVFGQSLILSN--VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY-MIIVAIVLLVALLIML--TKFPALQSDNH 239 (438)
T ss_dssp HHHHHHHHTTHHHHTS--SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--CCCCCCTTTCC
T ss_pred HHHHHHHHHHHHHhcc--cccccccccccCCcchhhhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHH--HcCCccccccc
Confidence 9999999888765211 111000 00000 0 011111 1111111111 11111 2234433222
Q ss_pred ccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhH
Q 012495 227 KEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSK-LKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQ 305 (462)
Q Consensus 227 ~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~-~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~ 305 (462)
+++++.+..+.++.++|+|.+...+...+++......+......+ .++.++.+++..+. .....++..++-.++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 240 SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAAN---YLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHH---HHHHHHHHHHHHHHHHH
Confidence 223345667888999999998888887777777776676666777 77766655544333 34444555555567788
Q ss_pred HHHHHhchhHHHHHHHHH
Q 012495 306 FVFDKFGWGVAAKITPTV 323 (462)
Q Consensus 306 ~li~r~G~~~~~~i~P~~ 323 (462)
++.+|+|.++...+.-++
T Consensus 317 ~l~~r~~~~~~~~~~~~~ 334 (438)
T 3o7q_A 317 WLISRFAPHKVLAAYALI 334 (438)
T ss_dssp HHHHHSCHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHH
Confidence 999999999887766553
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.55 E-value=2.6e-12 Score=131.18 Aligned_cols=254 Identities=10% Similarity=-0.006 Sum_probs=162.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch
Q 012495 28 AEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG 107 (462)
Q Consensus 28 a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 107 (462)
+++++++.....+.. .+..|..|+++||+|||+++..+...+++..++++++.. . .
T Consensus 61 ~~~~g~~~~~~~~~~-~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~---~------------------ 116 (451)
T 1pw4_A 61 RGDLGFALSGISIAY-GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--A---T------------------ 116 (451)
T ss_dssp SSCHHHHHHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHH--H---H------------------
T ss_pred HhHHHHHHHHHHHHH-HHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh--c---c------------------
Confidence 677999998776544 689999999999999999999998888887776665210 0 0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhhhhccCCCCCch
Q 012495 108 PLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDG 187 (462)
Q Consensus 108 ~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~ 187 (462)
.+.|...+.++..++......+ ...++++|.+++||+.|.+++...+.++|.++|+.+.+.+.+. .|+
T Consensus 117 ----~~~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~---- 184 (451)
T 1pw4_A 117 ----SSIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FND---- 184 (451)
T ss_dssp ----SSSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCC----
T ss_pred ----ccHHHHHHHHHHHHHHhhhccc-hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc----
Confidence 1456666777888887767777 5899999999999999999999999999999999888765432 221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc--c--c--------ccCCCCChHHH-HHHHhhcHHHHHHHHHH
Q 012495 188 WAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSK--K--K--------KEKPKMGTMES-LKFLVSSRYIRDLATLV 254 (462)
Q Consensus 188 ~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~--~--~--------~~k~~~~~~~~-l~~i~~s~yl~~l~~~v 254 (462)
|...+.. .. .+.....+..+...++....++..+ + + +++++.+..+. .+.++|+|.+..+++..
T Consensus 185 w~~~f~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (451)
T 1pw4_A 185 WHAALYM-PA--FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261 (451)
T ss_dssp STTCTHH-HH--HHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHH-HH--HHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHH
Confidence 2111110 10 1111111112212222111000000 0 0 00011122222 46778899888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHh--chhHHHHHHHHH
Q 012495 255 VAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKF--GWGVAAKITPTV 323 (462)
Q Consensus 255 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~--G~~~~~~i~P~~ 323 (462)
++.....+.++.....+.++.++.+++.. |.+....++..++-..+.+++.+|+ |.+....+...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 262 VFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 88887777777777777777666555333 3345555565555567788999999 988877655553
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.38 E-value=2.8e-12 Score=128.22 Aligned_cols=255 Identities=9% Similarity=0.008 Sum_probs=159.3
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY 82 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~ 82 (462)
|+..++++..-|..+.+..+ .|.++++.+++.....+.. .+..|..|+++||+|||+++........+..++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~-~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-- 85 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTY-GVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHH-HHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--
Confidence 44455666777777665444 6666788999988776544 6899999999999999999998887777766655542
Q ss_pred hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495 83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV 162 (462)
Q Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l 162 (462)
.+.|...+.++..++......+ ...++++|.+++||+.|.++....+.++
T Consensus 86 -----------------------------~~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 86 -----------------------------SSLTVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILV 135 (375)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHH
T ss_pred -----------------------------ccHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 1456677777788887766666 5899999999999999999999999999
Q ss_pred HHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHHHHHHh
Q 012495 163 ALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLV 242 (462)
Q Consensus 163 G~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~l~~i~ 242 (462)
|.++|+.+...+.+. .+|. . .+.+.+...+........ ..||++++++++ .+..++++.++
T Consensus 136 g~~~~~~~~~~l~~~--------~~~~------~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~ 196 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTM--------WNWR------A-CYLFLLVLCAGVTFSMAR--WMPETRPVDAPR--TRLLTSYKTLF 196 (375)
T ss_dssp HHHHHHHHHHHSSCH--------HHHH------H-HHHHHHHHHHHHHCCCCC--SSCCCSTTTCCC--CCTTTCSTHHH
T ss_pred HHHhhHHHHHHHHHh--------ccHH------H-HHHHHHHHHHHHHHHHHH--HCcccCCCCccc--ccHHHHHHHHh
Confidence 999999888765321 0121 1 112222222221100111 124332221111 11223445566
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhch
Q 012495 243 SSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGW 313 (462)
Q Consensus 243 ~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~ 313 (462)
|+|.+..+.....+.....+.++.....+.++.++.+++ ..|......++..++...+.+++.||.|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 197 GNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSM---TVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHH---HHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788777766666666555554444333333333332222 22334555555555556667788888775
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.23 E-value=8.3e-10 Score=114.28 Aligned_cols=140 Identities=8% Similarity=-0.051 Sum_probs=102.9
Q ss_pred hhHHHHHHhhhccceeeecc-----cCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcc-cCchhHHHHHHHHHHHHHHHH
Q 012495 4 CILFNYTILRDTKDVLVVTA-----KGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADK-LSKQALFYTVIVPFIAFFGAF 77 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~-----~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r-~~r~~v~~~~l~~f~~~~~lf 77 (462)
+..++|+...+.-.....+. .|-++++.+++.....+ ...+..+..|+++|| +|||+++......+.+..++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (491)
T 4aps_A 24 WERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYAS-MVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL 102 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 34455555555555444443 55557788999887665 456899999999999 899999988877776665544
Q ss_pred HHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhh--hhhhhhh
Q 012495 78 GFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDE--AKRFYPL 155 (462)
Q Consensus 78 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~q--akR~fgl 155 (462)
++. + +.|...+.++..++......+ ...++++|.++++| +.+.++.
T Consensus 103 ~~~---------~----------------------~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~ 150 (491)
T 4aps_A 103 ALP---------F----------------------GASALFGSIILIIIGTGFLKP-NVSTLVGTLYDEHDRRRDAGFSI 150 (491)
T ss_dssp HSC---------C----------------------STTHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSSCTTHHHHHHHH
T ss_pred HHh---------h----------------------hHHHHHHHHHHHHHHHHhccc-hHHHHHHHHcCcccccceeeehH
Confidence 321 1 345556666777777666667 59999999999999 5557888
Q ss_pred hhhHHHHHHHhhhhhHHHhhh
Q 012495 156 FGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 156 i~ag~~lG~i~gg~~~~~l~~ 176 (462)
.+.+.++|.++|+.+.+.+.+
T Consensus 151 ~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 151 FVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988877653
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.07 E-value=2.5e-09 Score=109.07 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=132.6
Q ss_pred hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHH-HH
Q 012495 3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGF-LL 81 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~-~l 81 (462)
|+..++++..-|.-+....+..|-++++.+.+..... .++++..|..|+++||+||||++......+++....+.. ..
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~-~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAIS-LFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHH-HHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777666555545655788899988766 455789999999999999999988776655432111110 00
Q ss_pred hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHH
Q 012495 82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGAN 161 (462)
Q Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~ 161 (462)
.|. . ...+.....+.... ..-.++ ...+ ..-++.+|. .+++.+.++....+++
T Consensus 96 ~~~-------------~---~~~~~~~~~~~~~~-------~g~~~~-~~~~-~~~~~~~~~--~~~~~~~~g~~~~~~~ 148 (417)
T 2cfq_A 96 GPL-------------L---QYNILVGSIVGGIY-------LGFCFN-AGAP-AVEAFIEKV--SRRSNFEFGRARMFGC 148 (417)
T ss_dssp HHH-------------H---HTTCCHHHHGGGSS-------TTHHHH-TTHH-HHHHHHHHH--HHHHTCCHHHHSSSTT
T ss_pred HHH-------------H---HHHHHHHHHHHHHH-------HHHHHh-hhHH-HHHHHHHHh--hhhcccchHHHHHHHH
Confidence 000 0 00000000000000 000111 1112 122233433 2344556777777788
Q ss_pred HHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-ccc--ccc-ccCCCCChHHH
Q 012495 162 VALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELP-TRS--KKK-KEKPKMGTMES 237 (462)
Q Consensus 162 lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p-~~~--~~~-~~k~~~~~~~~ 237 (462)
+|..+|+.+...+.+ .+ |.. .+.+.+...+..........+.| +.. +++ +++++....+.
T Consensus 149 ~g~~~~~~l~~~l~~----~~-----~~~-------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (417)
T 2cfq_A 149 VGWALGASIVGIMFT----IN-----NQF-------VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL 212 (417)
T ss_dssp THHHHHHHHHHHHHH----HC-----SHH-------HHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHH----hc-----hhH-------HHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHH
Confidence 888888777665542 11 111 11111111111110011111111 000 010 11111122345
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHH
Q 012495 238 LKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAA 317 (462)
Q Consensus 238 l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~ 317 (462)
.+.++|+|....+....+.........+..+..+..+.+++.+.-.+..|......++..++...+.+++.+|+|.++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l 292 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL 292 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence 66677888766555544443333333333344455555554322223334444444444454567788999999999876
Q ss_pred HHHHH
Q 012495 318 KITPT 322 (462)
Q Consensus 318 ~i~P~ 322 (462)
.+.-+
T Consensus 293 ~~~~~ 297 (417)
T 2cfq_A 293 LLAGT 297 (417)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.77 E-value=1.5e-06 Score=89.57 Aligned_cols=130 Identities=6% Similarity=-0.044 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcch-hh
Q 012495 31 IPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLG-PL 109 (462)
Q Consensus 31 l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~-~i 109 (462)
.+++.+.+. ...++-.++.|+++||+|||+++.++...+.+.-++.++.-.. ... ....... ..
T Consensus 57 ~g~~~s~~~-~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~-~~~-------------~~~~~~~~~~ 121 (491)
T 4gc0_A 57 LGFCVASAL-IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELG-FTS-------------INPDNTVPVY 121 (491)
T ss_dssp HHHHHHTHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTT-TSC-------------SSSSSSCCGG
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhh-hhh-------------hcchhHHHHH
Confidence 455555443 4556788999999999999999988887776655444431000 000 0000000 01
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhhh
Q 012495 110 AIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSN 176 (462)
Q Consensus 110 ~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~~ 176 (462)
...+.|...+.+.+.++-.....+ ....+++|..++++|.|..++...+...|.+.+.........
T Consensus 122 ~a~~~~~l~~~R~l~G~g~G~~~~-~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 122 LAGYVPEFVIYRIIGGIGVGLASM-LSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 124678888889999987767777 599999999999999999999999999999988877665543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.31 E-value=7.2e-06 Score=85.29 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=101.5
Q ss_pred hhhHHHHHHhhhccceeeecccC------CCcchhhHHHHHHHHHHHHHHHHHHHHHhccc-CchhHHHHHHHHHHHHHH
Q 012495 3 FCILFNYTILRDTKDVLVVTAKG------SSAEIIPFLKTWVNLPMAIGFMLLYTKLADKL-SKQALFYTVIVPFIAFFG 75 (462)
Q Consensus 3 F~i~~~y~ilr~~~d~l~~~~~g------~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~-~r~~v~~~~l~~f~~~~~ 75 (462)
|+..++++...+.-.....+..| -++++.+++.....+ ...+..+..|+++||+ |||+++......+.+..+
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI-GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHH-HHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 44555666666665555544455 457888999887665 4468899999999999 999998888777766665
Q ss_pred HHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhh---h
Q 012495 76 AFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKR---F 152 (462)
Q Consensus 76 lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR---~ 152 (462)
+.++. + .+.|...+.++..++......+ ...++++|.++++|+.+ .
T Consensus 101 ~~~~~---------~---------------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 101 FLAIF---------E---------------------HSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp HHHHT---------S---------------------SCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHH
T ss_pred HHHHh---------c---------------------ccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHH
Confidence 55431 1 0345555666677776656666 58999999999998854 5
Q ss_pred hhhhhhHHHHHHHhhhhhHHHhh
Q 012495 153 YPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 153 fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
++....+.++|..+|+.+...+.
T Consensus 150 ~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 150 FDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTSTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66699999999999888776654
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.85 E-value=0.00025 Score=71.54 Aligned_cols=142 Identities=11% Similarity=0.002 Sum_probs=92.4
Q ss_pred hhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccc--CchhHHHHHHHHHH-HHHHHHHHH
Q 012495 4 CILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKL--SKQALFYTVIVPFI-AFFGAFGFL 80 (462)
Q Consensus 4 ~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~--~r~~v~~~~l~~f~-~~~~lf~~~ 80 (462)
+..++++..-..-+.+..+..|.++++.+++..... .+.++..+..++++||+ +||+.+........ ..++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~----- 336 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE-YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI----- 336 (451)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-----
Confidence 334444445555555555545554667778777655 45678899999999999 99988765544333 2222
Q ss_pred HhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHH
Q 012495 81 LYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGA 160 (462)
Q Consensus 81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~ 160 (462)
+... .++ .+.|...+.....+.......+ ..+++++|.++++++.+.+++.+...
T Consensus 337 ~~~~----~~~--------------------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 391 (451)
T 1pw4_A 337 VYWM----NPA--------------------GNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFG 391 (451)
T ss_dssp HTTS----CCT--------------------TCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred HHHH----hcc--------------------cCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHH
Confidence 2111 110 0233333333444443334455 47899999999999999999999999
Q ss_pred HH-HHHhhhhhHHHhhh
Q 012495 161 NV-ALIFSGRTVKYFSN 176 (462)
Q Consensus 161 ~l-G~i~gg~~~~~l~~ 176 (462)
++ |..+|+.+.+.+.+
T Consensus 392 ~~~g~~~~~~~~g~l~~ 408 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVD 408 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99 99999988887653
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.67 E-value=0.00033 Score=70.85 Aligned_cols=114 Identities=8% Similarity=0.100 Sum_probs=71.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchh
Q 012495 29 EIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGP 108 (462)
Q Consensus 29 ~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (462)
+..+++..... .+..+..+..++++||+|||+++.......++.++++++ .++
T Consensus 259 ~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~---------~~~----------------- 311 (417)
T 2cfq_A 259 RVFGYVTTMGE-LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF---------ATS----------------- 311 (417)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---------CCS-----------------
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---------hcc-----------------
Confidence 44555555433 344567889999999999999877655544444332221 111
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhh-hhhHHHHHHHhhhhhHHHhh
Q 012495 109 LAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPL-FGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 109 i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgl-i~ag~~lG~i~gg~~~~~l~ 175 (462)
.|...+.............. ..|++++|.++.|++.+.++. .+.+.++|.++|+.+.+.+.
T Consensus 312 -----~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 312 -----ALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp -----HHHHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 11111111111121222334 479999999999999999999 48888899998888777553
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.46 E-value=0.0023 Score=65.47 Aligned_cols=108 Identities=12% Similarity=0.116 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHH
Q 012495 41 PMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120 (462)
Q Consensus 41 ~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~f 120 (462)
...++..++-+.+.||+|||+..........+..+.++....+ +.. ........
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-----~~~---------------------~~~~~~~~ 376 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-----QAP---------------------GIVALLSM 376 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-----TCC---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-----ccc---------------------hHHHHHHH
Confidence 4556788889999999999999988877777766666554321 000 00011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 121 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 121 yv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+....++...-+ ..|.+.+|++|.+-|.+..++..+.+.+|.++++.+...+.
T Consensus 377 ~~~~~~~~~~~~~-~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~ 430 (491)
T 4gc0_A 377 LFYVAAFAMSWGP-VCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMD 430 (491)
T ss_dssp HHHHHHHHTTTTH-HHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHC
T ss_pred HHHHHHHHhHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223222234 58999999999999999999999999999999887765543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.17 E-value=0.0015 Score=66.90 Aligned_cols=122 Identities=7% Similarity=0.031 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHH-----HHHHHHHHHHHHHHHHHhhcccccCCchHHHHHhhhhCCC
Q 012495 30 IIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFY-----TVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPR 104 (462)
Q Consensus 30 ~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~-----~~l~~f~~~~~lf~~~l~p~~~~~~~~~~~~~~~~~~~~~ 104 (462)
..+++...... ..++..++.++++||++||+... .........+.+.+..-. .+.+ ..+
T Consensus 320 ~~~~~~~~~~~-~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----------~~~ 383 (491)
T 4aps_A 320 PVSWFQSLNPL-FIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGA-----LYGT----------SGK 383 (491)
T ss_dssp CSGGGTTHHHH-HHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHH-----HCCC----------CTT
T ss_pred CHHHHhccchH-HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH-----hcCC----------CCC
Confidence 34444444443 34578899999999999987644 222223333332222110 0000 000
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 105 FLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 105 ~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
.+.|.....++..+.......+ ..+++++|.++++++.+..++.+...++|..+|+.+...+.
T Consensus 384 -------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 384 -------VSPLWLVGSWALVILGEMLISP-VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTTTT-HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred -------ccHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0233344444555554434445 48999999999999999999999999999999998877654
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.73 E-value=0.0086 Score=59.91 Aligned_cols=133 Identities=10% Similarity=-0.061 Sum_probs=83.5
Q ss_pred HHHHhhhcccee-eecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 012495 8 NYTILRDTKDVL-VVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSN 86 (462)
Q Consensus 8 ~y~ilr~~~d~l-~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~~~ 86 (462)
.+...-..-+.+ ..+..|-++++..++..... ...++..++.++++||++||+++........+..+++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------ 345 (438)
T 3o7q_A 273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM-VCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------ 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------
Confidence 333333444444 33433544666777777655 4556889999999999999999877766655554433321
Q ss_pred ccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHh
Q 012495 87 AIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIF 166 (462)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~ 166 (462)
+ +.|....+ +..+.......+ ..++++.|..+++ +++..+... .+.+|..+
T Consensus 346 ---~----------------------~~~~~~~~-~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~ 396 (438)
T 3o7q_A 346 ---G----------------------GHVGLIAL-TLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI 396 (438)
T ss_dssp ---C----------------------HHHHHHHH-HHHHHHHTTHHH-HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH
T ss_pred ---C----------------------CcHHHHHH-HHHHHHHHHHHH-HHHHHHHhhcccc-ccchhhHHH-HHHHHHHH
Confidence 1 11222222 333344335566 5899999998855 677777665 56688888
Q ss_pred hhhhHHHhhh
Q 012495 167 SGRTVKYFSN 176 (462)
Q Consensus 167 gg~~~~~l~~ 176 (462)
++.+.+.+.+
T Consensus 397 ~~~~~g~l~~ 406 (438)
T 3o7q_A 397 VTPVMGFVSD 406 (438)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=95.46 E-value=0.018 Score=56.41 Aligned_cols=139 Identities=14% Similarity=0.045 Sum_probs=79.5
Q ss_pred hHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 012495 5 ILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPL 84 (462)
Q Consensus 5 i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~p~ 84 (462)
...++......-+.+..+..|.++++.+++..... ...++..+..+++.||.+| +..............++.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~~-- 286 (375)
T 2gfp_A 211 GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPI-PAAFFGAWFAGRPNKRFST-LMWQSVICCLLAGLLMWIPDWF-- 286 (375)
T ss_dssp HHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHTTTTHHHH-HHHHHHHHHHHTSSSSSHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh--
Confidence 34444555555555554433433566777777555 4557888999999999987 2221111101111110000000
Q ss_pred ccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHH
Q 012495 85 SNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVAL 164 (462)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~ 164 (462)
. -.+.|......+..+.......+ ..+++++|.++ |++.+.+++.+...++|.
T Consensus 287 ----------~---------------~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~ 339 (375)
T 2gfp_A 287 ----------G---------------VMNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGS 339 (375)
T ss_dssp ----------H---------------HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ----------c---------------cccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHH
Confidence 0 01344444444444444334455 58899999997 899999999999999999
Q ss_pred HhhhhhHHHh
Q 012495 165 IFSGRTVKYF 174 (462)
Q Consensus 165 i~gg~~~~~l 174 (462)
.+++.+.+.+
T Consensus 340 ~~~~~~~g~l 349 (375)
T 2gfp_A 340 GVLASLSAML 349 (375)
T ss_dssp HCCSTTCTHH
T ss_pred HHHHHHHHHH
Confidence 9766555443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=91.99 E-value=0.26 Score=50.42 Aligned_cols=60 Identities=12% Similarity=0.033 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHHHHHhhhhhHHHhh
Q 012495 115 WSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFS 175 (462)
Q Consensus 115 w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~lG~i~gg~~~~~l~ 175 (462)
|.....++..++......+ ..+++++|..+++++.+..++.+...++|..+|+.+.+.+.
T Consensus 406 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 406 FWQILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444455566665555566 58999999999999999999999999999999999887654
Done!