BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012496
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 211/452 (46%), Gaps = 56/452 (12%)
Query: 2 EVEIISRESIKPSSPTPLDLKTHKLCLMDQFLSNAYAPRVLYYPLNQD-DLSSAIDIDHI 60
++E +S E I PSSPTP LK +K+ +DQ L + P +L+YP D +L A H+
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHL 63
Query: 61 VXXXXXXXXXXXXETLVHFYPLAGKLTNNFSVDCNDEGVYFVEAAAKSPLNELLIQPDLN 120
+ L HFYPLAG++ N SVDCND GV FVEA ++ L++ +
Sbjct: 64 --------KQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQN---- 111
Query: 121 LINKLCPVDGSQQSGQVAGAHVAM-------VQVTSFACGGLVICACISHTFGDGTSFSS 173
+ +L +D S G + + V+++ F CGG I +SH D S ++
Sbjct: 112 -VVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLAT 170
Query: 174 FXXXXXXXXXXXXSEEETIFICPNYDASSLFLPNEDDLFHQLRAVSNASYTRLLETGTFV 233
F ET + PN+D ++ P V N L+ V
Sbjct: 171 F-----LNAWTATCRGETEIVLPNFDLAARHFP----------PVDNTPSPELVPDENVV 215
Query: 234 KRRFVFDXXXXXXXXXXXXS-SRVQNPTRIEVLSAILSKSIMAVVNKKSGSHKPMLLSHA 292
+RFVFD S S +N +R++++ A + K ++ V K G+ ++ A
Sbjct: 216 MKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQA 275
Query: 293 VNLRPRARPPLSEYLIGNIVWYT-NALFTEEGVDLDGLVWQLREAISKFDGEFVKS-LQG 350
VNLR R PPL Y +GNI A+ E D L+ LR ++ K + + L+G
Sbjct: 276 VNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKG 335
Query: 351 VGGLLKLSEAIKYEAEACSDAKNRVIFSSWCTFGFYGIDFGWGQPIWVSCVGFGGSILQF 410
+ L +L + + + F+SWC GFY +DFGWG+P+ F
Sbjct: 336 MTCLYEL------------EPQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAAL 383
Query: 411 SPIINLVDTRFGDGIEAWVSLLEEDMALLEVD 442
L+DTR GDG+EAW+ + E++MA+L V+
Sbjct: 384 -----LMDTRSGDGVEAWLPMAEDEMAMLPVE 410
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 22/176 (12%)
Query: 1 MEVEIISRESIKPSSPTPLDLKTHKLCLMDQFLSNAYAPRVLYY-PLNQDDLSSAIDIDH 59
M++E+ ++P+ TP + +D + N + P V +Y P + A +
Sbjct: 6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKD 63
Query: 60 IVXXXXXXXXXXXXETLVHFYPLAGKLTNN----FSVDCNDEGVYFVEAAAKSPLNELL- 114
+ LV FYP+AG+L + ++CN EGV FVEA + +++
Sbjct: 64 ALS-----------RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD 112
Query: 115 IQPDLNLINKLCPVDGSQQSGQVAGAHVAMVQVTSFACGGLVICACISHTFGDGTS 170
P L L + VD SQ ++ + ++QVT F CGG+ + + H DG S
Sbjct: 113 FAPTLELRRLIPAVDYSQ---GISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFS 165
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 292 AVNLRPRARPPLSEYLIGNIVWYTNALFTEEGVDLDGLVW----QLREAISKFDGEFVKS 347
A + R R RP L GN+++ + ++ VW ++ +A+++ D ++++S
Sbjct: 288 ATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRS 346
Query: 348 LQGVGGLLKLSEAIKYEAEACSDAKN-RVIFSSWCTFGFYGIDFGWGQPIWVSCVGFGGS 406
L+L +K K + +SW + DFGWG+PI++ G
Sbjct: 347 ALD---YLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYE 403
Query: 407 ILQFSPIINLVDTRFGDG-IEAWVSLLEEDMALLE 440
L F ++ + DG + +SL E M L +
Sbjct: 404 GLSF-----ILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 1 MEVEIISRESIKPSSPTPLDLKTHKLCLMDQFLSNAYAPRVLYY-PLNQDDLSSAIDIDH 59
M++E+ ++P+ TP + +D + N + P V +Y P + A +
Sbjct: 3 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKD 60
Query: 60 IVXXXXXXXXXXXXETLVHFYPLAGKLTNN----FSVDCNDEGVYFVEAAAKSPLNELL- 114
+ LV FYP+AG+L + ++CN EGV FVEA + +++
Sbjct: 61 ALS-----------RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD 109
Query: 115 IQPDLNLINKLCPVDGSQQSGQVAGAHVAMVQVTSFACGGLVICACISHTFGDGTS 170
P L L + VD SQ A + ++QVT F CGG+ + + H DG S
Sbjct: 110 FAPTLELRRLIPAVDYSQGISSYA---LLVLQVTYFKCGGVSLGVGMRHHAADGFS 162
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 292 AVNLRPRARPPLSEYLIGNIVWYTNALFTEEGVDLDGLVW----QLREAISKFDGEFVKS 347
A + R R RP L GN+++ + ++ VW ++ +A+++ D ++++S
Sbjct: 285 ATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRS 343
Query: 348 LQGVGGLLKLSEAIKYEAEACSDAK-NRVIFSSWCTFGFYGIDFGWGQPIWVSCVGFGGS 406
L+L +K K + +SW + DFGWG+PI++ G
Sbjct: 344 ALD---YLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYE 400
Query: 407 ILQFSPIINLVDTRFGDG-IEAWVSLLEEDMALLE 440
L F ++ + DG + +SL E M L +
Sbjct: 401 GLSF-----ILPSPTNDGSMSVAISLQGEHMKLFQ 430
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 1 MEVEIISRESIKPSSPTPLDLKTHKLCLMDQFLSNAYAPRVLYY-PLNQDDLSSAIDIDH 59
M++E+ ++P+ TP + +D + N + P V +Y P + A +
Sbjct: 6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKD 63
Query: 60 IVXXXXXXXXXXXXETLVHFYPLAGKLTNN----FSVDCNDEGVYFVEAAAKSPLNELL- 114
+ LV FYP+AG+L + ++CN EGV FVEA + +++
Sbjct: 64 ALS-----------RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD 112
Query: 115 IQPDLNLINKLCPVDGSQQSGQVAGAHVAMVQVTSFACGGLVICACISHTFGDGTS 170
P L L + VD SQ A + ++QVT F GG+ + + H DG S
Sbjct: 113 FAPTLELRRLIPAVDYSQGISSYA---LLVLQVTYFKXGGVSLGVGMRHHAADGFS 165
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 292 AVNLRPRARPPLSEYLIGNIVWYTNALFTEEGVDLDGLVW----QLREAISKFDGEFVKS 347
A + R R RP L GN+++ + ++ VW ++ +A+++ D ++++S
Sbjct: 288 ATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRS 346
Query: 348 LQGVGGLLKLSEAIKYEAEACSDAKN-RVIFSSWCTFGFYGIDFGWGQPIWVSCVGFGGS 406
L+L +K K + +SW + DFGWG+PI++ G
Sbjct: 347 ALD---YLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYE 403
Query: 407 ILQFSPIINLVDTRFGDG-IEAWVSLLEEDMALLE 440
L F ++ + DG + +SL E M L +
Sbjct: 404 GLSF-----ILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 123/347 (35%), Gaps = 42/347 (12%)
Query: 75 TLVHFYPLAGKLTNNFSVDCNDEGVYFVE--------AAAKSPLNELLIQPDLNL--INK 124
TL HFYP GKL + + +VE A LNEL N
Sbjct: 72 TLKHFYPFVGKLV-VYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCDKFYD 130
Query: 125 LCPVDG-SQQSGQVAGAHVAMVQVTSFACGGLVICACISHTFGDGTSFSSFXXXXXXXXX 183
L P+ G S + + VQVT F G+ I H GD ++ F
Sbjct: 131 LVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIAR 190
Query: 184 XXXSEEETIF--ICPNYDASSLFLPNEDDLFHQLRAVS--NASYTRLLETGTFVKRRFVF 239
++E + P YD + P D+ + + V N Y G K R F
Sbjct: 191 SGNNDESFLANGTRPLYDRIIKY-PMLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATF 249
Query: 240 DXXXXXXXXXXXXSSRV--QNPTRIEVLSAILSKSIMAVVNKKSGSHKPMLLSHAVNLRP 297
RV Q PT V S ++ + + KS + K L ++ R
Sbjct: 250 ---ILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRRA 306
Query: 298 RARPPLSEYLIGNIVW------YTNALFTEEG-VDLDGLVWQ-LREAISKF-DGEFVKSL 348
R +PP+ GN V TN L +EG + L+ + L + ++ + DG +
Sbjct: 307 RMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDM 366
Query: 349 QGVGGLLKLSEAIKYEAEACSDAKNRVIFSSWCTFGFYGIDFGWGQP 395
+ L +SE + S FY +DFGWG+P
Sbjct: 367 ESFNDL--VSEGMPTTMTWVSGTPK---------LRFYDMDFGWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 115/353 (32%), Gaps = 54/353 (15%)
Query: 75 TLVHFYPLAGKLTNNFSVDCNDEGVYFVE--------AAAKSPLNELLIQPDLNL--INK 124
TL HFYP GKL + + +VE A LNEL N
Sbjct: 72 TLKHFYPFVGKLV-VYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCDKFYD 130
Query: 125 LCPVDG-SQQSGQVAGAHVAMVQVTSFACGGLVICACISHTFGDGTSFSSFXXXXXXXXX 183
L P+ G S + + VQVT F G+ I H GD ++ F
Sbjct: 131 LVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIAR 190
Query: 184 XXXSEEETIF--ICPNYDASSLFLPNEDDLFHQLRAVS--NASYTRLLETGTFVKRRFVF 239
++E + P YD + P D+ + + V N Y G K R F
Sbjct: 191 SGNNDESFLANGTRPLYDRIIKY-PXLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATF 249
Query: 240 DXXXXXXXXXXXXSSRV--QNPTRIEVLSAILSKSIMAVVNKKSGSHKPMLLSHAVNLRP 297
RV Q PT V S ++ + + KS + K L ++ R
Sbjct: 250 ---ILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRRA 306
Query: 298 RARPPLSEYLIGNIVW------YTNALFTEEGV---------DLDGLVWQLREAISKFDG 342
R +PP+ GN V TN L +EG +L + ++ + K D
Sbjct: 307 RXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDX 366
Query: 343 EFVKSLQGVGGLLKLSEAIKYEAEACSDAKNRVIFSSWCTFGFYGIDFGWGQP 395
E L G S FY DFGWG+P
Sbjct: 367 ESFNDLVSEGX-----------------PTTXTWVSGTPKLRFYDXDFGWGKP 402
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 78/197 (39%), Gaps = 22/197 (11%)
Query: 263 EVLSAILSKSIMAVVNKKSGSHKPMLLSHAVNLRPRARPPLSEY--LIGNIVWYTNALFT 320
+ LSA + KS V ++ P AV+ RP A + Y L+ N+ ++ + +
Sbjct: 263 DALSAFIWKSASRVRLERIDGSAPTEFCRAVDARP-AMGVSNNYPGLLQNMTYHNSTIGE 321
Query: 321 EEGVDLDGLVWQLREAISKFDGEFVKSLQGVGGLLKLS-EAIKYEAEACSDAKNRVIFSS 379
L +LR + + +G+ L + + A +D V+ SS
Sbjct: 322 IANESLGATASRLRSELDP--ASMRQRTRGLATYLHNNPDKSNVSLTADADPSTSVMLSS 379
Query: 380 WCTFGFYGIDFGWGQPIWVSCVGFGGSILQFSPIINLVDT------RFGDG-IEAWVSLL 432
W G + DFG +G G PI V++ + DG A +SL
Sbjct: 380 WAKVGLWDYDFG---------LGLGKPETVRRPIFEPVESLMYFMPKKPDGEFCAALSLR 430
Query: 433 EEDMALLEVDKNLLEFA 449
+EDM L+ DK ++A
Sbjct: 431 DEDMDRLKADKEWTKYA 447
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 367 ACSDAKNRVIFSSWCTFGFYGIDFGWGQPIWVSCVGFGGSILQFSPIINLVDT------R 420
A +D V SSW G + DFG +G G PI V++ +
Sbjct: 368 ADADPSTSVXLSSWAKVGLWDYDFG---------LGLGKPETVRRPIFEPVESLXYFXPK 418
Query: 421 FGDG-IEAWVSLLEEDMALLEVDKNLLEFA 449
DG A +SL +ED L+ DK ++A
Sbjct: 419 KPDGEFCAALSLRDEDXDRLKADKEWTKYA 448
>pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
pdb|3B5Q|B Chain B, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
Length = 482
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 107 KSPLNELLIQPDLNLINKLCPVDGSQQSGQVAGAHVA 143
K P++ LL QP L+L+ LC + G + AG +A
Sbjct: 321 KKPVDHLLTQPTLDLLPTLCDLAGIAVPAEKAGISLA 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,489,724
Number of Sequences: 62578
Number of extensions: 493769
Number of successful extensions: 833
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 14
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)