Query 012498
Match_columns 462
No_of_seqs 15 out of 17
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 10:37:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 89.4 3.5 0.00012 40.5 11.9 63 136-198 527-589 (597)
2 1c1g_A Tropomyosin; contractIl 88.9 9.1 0.00031 31.8 35.2 23 14-36 3-25 (284)
3 3s4r_A Vimentin; alpha-helix, 88.5 2.1 7.1E-05 35.1 8.2 64 12-87 18-81 (93)
4 1i84_S Smooth muscle myosin he 86.9 2.6 8.8E-05 46.5 10.2 8 316-323 1153-1160(1184)
5 3o0z_A RHO-associated protein 84.3 5 0.00017 36.7 9.2 77 14-96 52-138 (168)
6 3oja_B Anopheles plasmodium-re 81.3 43 0.0015 32.8 15.1 38 146-183 544-581 (597)
7 2fxo_A Myosin heavy chain, car 79.8 27 0.00091 29.5 15.4 108 56-191 14-121 (129)
8 1c1g_A Tropomyosin; contractIl 79.4 26 0.00088 29.1 34.0 24 14-37 10-33 (284)
9 1go4_E MAD1 (mitotic arrest de 78.7 7 0.00024 33.2 7.5 29 11-39 13-41 (100)
10 3tnu_B Keratin, type II cytosk 78.6 29 0.00098 29.2 11.5 77 146-262 36-118 (129)
11 1i84_S Smooth muscle myosin he 75.1 14 0.00048 40.8 10.6 13 418-430 1150-1162(1184)
12 2zqm_A Prefoldin beta subunit 75.0 13 0.00046 29.6 7.9 77 13-89 23-111 (117)
13 3tnu_A Keratin, type I cytoske 73.7 32 0.0011 29.0 10.3 77 146-262 38-120 (131)
14 2dfs_A Myosin-5A; myosin-V, in 73.1 1.2E+02 0.0042 33.7 18.0 30 58-87 924-953 (1080)
15 1nkp_A C-MYC, MYC proto-oncoge 72.4 6.4 0.00022 31.7 5.5 54 188-253 20-73 (88)
16 1fxk_A Prefoldin; archaeal pro 72.0 20 0.0007 28.2 8.2 84 143-255 5-88 (107)
17 2dfs_A Myosin-5A; myosin-V, in 71.9 1E+02 0.0035 34.3 16.4 14 25-38 961-974 (1080)
18 3ol1_A Vimentin; structural ge 71.5 45 0.0015 28.0 12.6 53 60-112 18-70 (119)
19 1deq_A Fibrinogen (alpha chain 70.6 15 0.00053 37.4 8.9 53 252-304 98-150 (390)
20 2efr_A General control protein 70.4 60 0.0021 29.1 20.7 121 60-197 26-146 (155)
21 3vkg_A Dynein heavy chain, cyt 69.2 2.4E+02 0.0082 35.5 23.0 24 46-69 1901-1924(3245)
22 3o0z_A RHO-associated protein 69.1 70 0.0024 29.3 18.5 125 134-295 29-153 (168)
23 1am9_A Srebp-1A, protein (ster 68.4 8.3 0.00028 30.5 5.2 53 189-255 21-73 (82)
24 1fxk_A Prefoldin; archaeal pro 67.5 19 0.00067 28.3 7.2 74 13-86 18-103 (107)
25 1m1j_B Fibrinogen beta chain; 65.6 58 0.002 33.6 12.0 52 230-281 91-142 (464)
26 1nkp_B MAX protein, MYC proto- 64.7 13 0.00045 29.0 5.6 54 188-254 16-69 (83)
27 3hnw_A Uncharacterized protein 64.6 36 0.0012 29.5 8.9 31 132-162 103-133 (138)
28 1hlo_A Protein (transcription 64.4 11 0.00036 29.5 5.1 53 188-253 26-78 (80)
29 2ke4_A CDC42-interacting prote 61.9 26 0.00089 29.1 7.2 71 12-98 10-88 (98)
30 4h22_A Leucine-rich repeat fli 61.8 57 0.002 27.9 9.4 61 124-184 22-82 (103)
31 2v4h_A NF-kappa-B essential mo 61.0 23 0.00078 30.7 6.9 66 12-81 40-109 (110)
32 3mtu_A Tropomyosin alpha-1 cha 59.3 10 0.00035 30.0 4.2 32 10-42 16-51 (75)
33 1nlw_A MAD protein, MAX dimeri 58.1 15 0.0005 29.3 4.9 56 188-255 15-70 (80)
34 1l8d_A DNA double-strand break 57.9 38 0.0013 27.1 7.4 50 37-86 53-102 (112)
35 2b5u_A Colicin E3; high resolu 54.8 16 0.00056 38.6 5.9 49 72-130 317-375 (551)
36 1l8d_A DNA double-strand break 54.4 39 0.0013 27.0 6.9 24 232-255 64-87 (112)
37 1zme_C Proline utilization tra 53.4 13 0.00046 27.0 3.7 27 230-256 42-68 (70)
38 2zqm_A Prefoldin beta subunit 53.0 84 0.0029 24.9 12.0 85 142-255 9-93 (117)
39 3mq9_A Bone marrow stromal ant 51.3 44 0.0015 32.1 7.9 56 383-441 371-432 (471)
40 3etw_A Adhesin A; antiparallel 50.6 1.3E+02 0.0043 26.2 10.8 37 56-98 10-46 (119)
41 2jo8_A Serine/threonine-protei 47.0 40 0.0014 25.8 5.4 39 268-306 11-49 (51)
42 1wt6_A Myotonin-protein kinase 45.9 96 0.0033 25.7 7.9 65 121-185 2-70 (81)
43 2wt7_A Proto-oncogene protein 45.9 57 0.002 24.6 6.2 47 408-454 6-58 (63)
44 2v66_B Nuclear distribution pr 45.9 1.4E+02 0.0049 25.5 13.5 63 53-115 8-74 (111)
45 3hnw_A Uncharacterized protein 43.6 93 0.0032 27.0 8.0 30 57-86 105-134 (138)
46 1t2k_D Cyclic-AMP-dependent tr 42.2 82 0.0028 23.4 6.5 47 408-454 5-57 (61)
47 3ghg_C Fibrinogen gamma chain; 42.0 2.7E+02 0.0091 28.4 12.2 100 220-328 13-141 (411)
48 3na7_A HP0958; flagellar bioge 42.0 2E+02 0.007 26.2 17.7 57 15-88 16-72 (256)
49 3swy_A Cyclic nucleotide-gated 41.1 73 0.0025 23.7 6.0 40 236-275 2-45 (46)
50 1m1j_A Fibrinogen alpha subuni 40.8 1.1E+02 0.0037 32.2 9.3 45 259-303 103-147 (491)
51 1p9i_A Cortexillin I/GCN4 hybr 40.7 36 0.0012 23.7 3.9 26 230-255 4-29 (31)
52 3etv_A Protein transport prote 40.7 68 0.0023 32.4 7.6 24 13-36 12-35 (355)
53 1ytz_T Troponin T; muscle, THI 39.2 96 0.0033 26.3 7.2 45 381-431 45-89 (107)
54 3ghg_A Fibrinogen alpha chain; 38.8 49 0.0017 35.2 6.5 79 241-323 66-147 (562)
55 2wt7_A Proto-oncogene protein 38.1 80 0.0027 23.8 6.0 38 153-190 23-60 (63)
56 1joc_A EEA1, early endosomal a 37.9 1.2E+02 0.0041 25.5 7.7 51 126-176 5-55 (125)
57 3s4r_A Vimentin; alpha-helix, 37.7 71 0.0024 26.0 6.0 43 411-453 48-90 (93)
58 2akf_A Coronin-1A; coiled coil 37.2 17 0.00057 25.6 1.8 22 234-255 1-22 (32)
59 1t2k_D Cyclic-AMP-dependent tr 36.4 78 0.0027 23.5 5.6 35 155-189 24-58 (61)
60 1ci6_A Transcription factor AT 35.7 71 0.0024 24.3 5.4 37 154-190 24-60 (63)
61 1ic2_A Tropomyosin alpha chain 35.6 1.6E+02 0.0054 23.0 9.7 55 132-186 13-67 (81)
62 1ic2_A Tropomyosin alpha chain 35.3 1.6E+02 0.0054 23.0 8.6 65 14-88 3-67 (81)
63 2fxo_A Myosin heavy chain, car 35.1 1.5E+02 0.005 25.0 7.7 45 140-184 77-121 (129)
64 3ghg_A Fibrinogen alpha chain; 35.0 1E+02 0.0034 32.9 8.0 76 230-305 62-148 (562)
65 3ra3_A P1C; coiled coil domain 33.9 21 0.00071 24.4 1.8 22 234-255 2-23 (28)
66 1j1d_B Troponin T, TNT; THIN f 32.3 94 0.0032 26.3 6.1 45 381-431 45-89 (106)
67 2v71_A Nuclear distribution pr 31.8 3.1E+02 0.011 25.3 13.7 93 138-260 41-144 (189)
68 1fxk_C Protein (prefoldin); ar 30.7 2.2E+02 0.0076 23.3 9.8 79 11-89 16-129 (133)
69 3t98_B Nucleoporin NUP58/NUP45 30.4 1.8E+02 0.0062 24.0 7.4 57 144-200 10-74 (93)
70 1jnm_A Proto-oncogene C-JUN; B 29.9 1.1E+02 0.0039 22.7 5.6 35 420-454 23-57 (62)
71 3m91_A Proteasome-associated A 29.9 1.6E+02 0.0054 22.2 6.3 42 152-193 8-49 (51)
72 3vmx_A Voltage-gated hydrogen 29.7 61 0.0021 24.6 4.0 26 11-36 12-37 (48)
73 3ssb_C IMPI alpha, inducible m 28.8 16 0.00056 26.7 0.7 16 344-359 20-35 (40)
74 3u1c_A Tropomyosin alpha-1 cha 28.2 2.4E+02 0.0083 22.9 9.2 66 13-88 5-70 (101)
75 2oqq_A Transcription factor HY 28.0 1.4E+02 0.0048 22.2 5.5 25 232-256 3-27 (42)
76 4ati_A MITF, microphthalmia-as 27.6 31 0.0011 29.1 2.4 69 189-274 42-112 (118)
77 2v66_B Nuclear distribution pr 27.6 2.9E+02 0.0099 23.6 10.1 38 262-299 51-88 (111)
78 1lrz_A FEMA, factor essential 27.4 1.8E+02 0.0062 28.0 7.9 55 229-284 244-298 (426)
79 3i00_A HIP-I, huntingtin-inter 27.1 1.6E+02 0.0056 25.2 6.8 64 19-88 17-80 (120)
80 3abf_A 4-oxalocrotonate tautom 26.9 60 0.0021 22.6 3.5 21 211-231 38-59 (64)
81 1f5n_A Interferon-induced guan 26.9 2.2E+02 0.0076 29.7 9.0 55 114-168 463-523 (592)
82 3swf_A CGMP-gated cation chann 26.8 1.3E+02 0.0046 24.4 5.8 42 236-277 4-49 (74)
83 3ghg_B Fibrinogen beta chain; 26.5 2.1E+02 0.0071 29.8 8.5 65 211-276 62-132 (461)
84 1jnm_A Proto-oncogene C-JUN; B 25.9 65 0.0022 24.1 3.6 36 153-188 22-57 (62)
85 1sig_A Sigma70, RNA polymerase 25.5 1.8E+02 0.0061 27.1 7.3 67 11-77 156-241 (339)
86 1deq_A Fibrinogen (alpha chain 24.9 5.7E+02 0.02 26.2 13.5 120 58-191 63-193 (390)
87 2d1l_A Metastasis suppressor p 24.9 4.5E+02 0.015 24.9 10.5 57 241-300 140-201 (253)
88 1m1j_B Fibrinogen beta chain; 24.7 5.9E+02 0.02 26.2 11.9 47 146-192 100-146 (464)
89 1g6u_A Domain swapped dimer; d 24.5 74 0.0025 23.8 3.6 25 233-257 21-45 (48)
90 2er8_A Regulatory protein Leu3 23.9 41 0.0014 24.7 2.2 25 229-253 46-70 (72)
91 2ve7_A Kinetochore protein HEC 23.8 87 0.003 30.0 5.0 22 206-227 255-277 (315)
92 3vkg_A Dynein heavy chain, cyt 23.1 1.2E+03 0.043 29.4 20.6 99 138-237 2027-2128(3245)
93 3fx7_A Putative uncharacterize 22.7 2.2E+02 0.0075 23.9 6.6 29 156-184 9-37 (94)
94 3pmr_A Amyloid-like protein 1; 22.6 4.6E+02 0.016 24.8 9.5 20 259-278 127-146 (219)
95 3d5a_X RF1, peptide chain rele 22.5 1.8E+02 0.0061 29.2 7.0 95 144-258 1-95 (354)
96 2dq0_A Seryl-tRNA synthetase; 22.5 2.5E+02 0.0085 28.2 8.1 23 14-36 42-64 (455)
97 2os5_A Acemif; macrophage migr 22.3 81 0.0028 25.1 3.8 26 204-229 88-113 (119)
98 3u59_A Tropomyosin beta chain; 22.2 3.1E+02 0.011 22.1 9.2 52 133-184 17-68 (101)
99 4avm_A Bridging integrator 2; 22.2 4.4E+02 0.015 23.8 13.3 27 11-37 34-60 (237)
100 1a93_B MAX protein, coiled coi 22.2 85 0.0029 22.4 3.4 22 155-176 9-30 (34)
101 1hjb_A Ccaat/enhancer binding 22.1 2E+02 0.0067 23.6 6.0 35 148-189 38-72 (87)
102 1dh3_A Transcription factor CR 21.7 73 0.0025 23.8 3.2 22 234-255 31-52 (55)
103 1gu4_A CAAT/enhancer binding p 21.7 2E+02 0.0067 23.1 5.9 34 146-179 36-69 (78)
104 3viq_B Mating-type switching p 21.5 93 0.0032 25.8 4.0 32 12-43 3-34 (85)
105 1joc_A EEA1, early endosomal a 21.4 3.1E+02 0.011 22.9 7.3 22 51-72 7-28 (125)
106 3na7_A HP0958; flagellar bioge 21.1 4.7E+02 0.016 23.8 21.5 18 81-98 13-30 (256)
107 3m21_A Probable tautomerase HP 20.4 93 0.0032 22.4 3.5 28 204-232 34-62 (67)
108 4dzn_A Coiled-coil peptide CC- 20.3 84 0.0029 22.1 3.0 20 57-76 4-23 (33)
109 2lw1_A ABC transporter ATP-bin 20.1 3.2E+02 0.011 21.4 7.4 54 16-73 21-74 (89)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.38 E-value=3.5 Score=40.49 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 012498 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 198 (462)
Q Consensus 136 kaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~ 198 (462)
+.++..++.-+++..+++..++++..+.++|+.-..++.+.+..+.+...+...+++=|+-|.
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 333444445566677777777888888888888888888888888888888888887777765
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=88.92 E-value=9.1 Score=31.82 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012498 14 ALMARIQQLEHERDELRKDIEQL 36 (462)
Q Consensus 14 ~l~~RI~qLe~ERdEL~KDIEqL 36 (462)
.+..++..|+++.+.+...++.+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l 25 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555666666666666555554
No 3
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.47 E-value=2.1 Score=35.12 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 012498 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (462)
Q Consensus 12 ~e~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsE 87 (462)
-++.+.+|..||.+--.|..+|+++.- .||+ ++. .-.+.+|+.|+.++...+.+|..|.-|+..
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~--~~~~------~~~----~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKG--QGKS------RLG----DLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCC------CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999863 3443 222 125888999999999999999998887754
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.91 E-value=2.6 Score=46.47 Aligned_cols=8 Identities=0% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHhhh
Q 012498 316 SDVIEEKT 323 (462)
Q Consensus 316 v~~ieekl 323 (462)
+..+.++|
T Consensus 1153 le~L~~~I 1160 (1184)
T 1i84_S 1153 LEALKTEL 1160 (1184)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 5
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.32 E-value=5 Score=36.68 Aligned_cols=77 Identities=26% Similarity=0.323 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHH----------HHhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 012498 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH----------FQRTAGLEQEIEILKQKIAACARENSNLQE 83 (462)
Q Consensus 14 ~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~----------~qRta~LEQeiE~Lkkkl~~c~ren~nLQE 83 (462)
-|-.++..|+..|+.|.+|+-+|=-| |.-=.|.. --|..+|+.|++.++..+.....||..|||
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~------L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E 125 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAI------LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD 125 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578889999999999999776443 22222222 237889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 012498 84 ELSEAYRIKGQLA 96 (462)
Q Consensus 84 ELsEAYRiK~qLa 96 (462)
-++.-=.=|+-+.
T Consensus 126 kl~~lEKe~a~~e 138 (168)
T 3o0z_A 126 MLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9987655554443
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.26 E-value=43 Score=32.82 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhh
Q 012498 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (462)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~ 183 (462)
++..+++.++++......+.++.+..+-.++..+.+.+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555666555556666666666666666655543
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.77 E-value=27 Score=29.50 Aligned_cols=108 Identities=21% Similarity=0.283 Sum_probs=64.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHH
Q 012498 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (462)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFAERD~slmEaE 135 (462)
-.+.++.+|..|+.++.........|.+.....--=|..|... + -||+++. -+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q--------------L----------~~E~~~l-~e-- 66 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ--------------V----------QAEQDNL-AD-- 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H----------HHHHHHH-HH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H----------HHHHHHH-Hh--
Confidence 3456777888888877766655555555443333333333322 1 1233331 12
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHH
Q 012498 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (462)
Q Consensus 136 kaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~ 191 (462)
+.|+-+.+...-.+++..+.++++.+.+....|..|+..-.++..+...+.+-|+
T Consensus 67 -~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 67 -AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2244455556666777777777777777777888887777777777666655544
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=79.37 E-value=26 Score=29.08 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012498 14 ALMARIQQLEHERDELRKDIEQLC 37 (462)
Q Consensus 14 ~l~~RI~qLe~ERdEL~KDIEqLC 37 (462)
++...|..+....++|..+++.+-
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~l~ 33 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADKKAAE 33 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 9
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=78.66 E-value=7 Score=33.15 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012498 11 ESEALMARIQQLEHERDELRKDIEQLCMQ 39 (462)
Q Consensus 11 ~~e~l~~RI~qLe~ERdEL~KDIEqLCMQ 39 (462)
+...|..+|..|+.||+.|++.|+.|=|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999988774
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.58 E-value=29 Score=29.18 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccc
Q 012498 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (462)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsf 225 (462)
..+.++...+..++..+..++.+|..|...++..+.+-+.-.+
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~------------------------------------- 78 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK------------------------------------- 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 4467777777777788888888887777777766554431100
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHHHh------hhhhhHHHH
Q 012498 226 NDTSTSKYISALEDELEKTRSSVENLQS------KLRMGLEIE 262 (462)
Q Consensus 226 n~tstskyisaLEeE~e~lr~~i~~LQs------kLR~GLeIe 262 (462)
....-|+.||.++..+|..+...-. +++++|++|
T Consensus 79 ---~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~E 118 (129)
T 3tnu_B 79 ---DARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVE 118 (129)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334688899999999987765432 344555554
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=75.07 E-value=14 Score=40.76 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhh
Q 012498 418 QKKIEELQRNLFQ 430 (462)
Q Consensus 418 q~~ieeLqrnl~Q 430 (462)
+..+++|+..|..
T Consensus 1150 ~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1150 SEELEALKTELED 1162 (1184)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3345555554444
No 12
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=74.96 E-value=13 Score=29.59 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 012498 13 EALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENSN 80 (462)
Q Consensus 13 e~l~~RI~qLe~ERdEL~KDIEqL--------CMQQaGpgyl----~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~n 80 (462)
..+..+|.+|+.+..++..=++.| |.-..||-|| +-|.-.+-.|...++.+|+.|.+++..+..+=..
T Consensus 23 ~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 23 QLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655544444 7778888775 4577788899999999999999998887777777
Q ss_pred hHHHHHHHH
Q 012498 81 LQEELSEAY 89 (462)
Q Consensus 81 LQEELsEAY 89 (462)
|+..|-+.+
T Consensus 103 lk~~l~~~~ 111 (117)
T 2zqm_A 103 LTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.75 E-value=32 Score=29.05 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccc
Q 012498 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (462)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsf 225 (462)
..+.++..++..++..+..++.+|..|...++..+.+.+.-++
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~------------------------------------- 80 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA------------------------------------- 80 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 4467777777777777777777777777777666554431000
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHHHh------hhhhhHHHH
Q 012498 226 NDTSTSKYISALEDELEKTRSSVENLQS------KLRMGLEIE 262 (462)
Q Consensus 226 n~tstskyisaLEeE~e~lr~~i~~LQs------kLR~GLeIe 262 (462)
....-|+.||.++..+|..+...-. +++++|++|
T Consensus 81 ---~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~E 120 (131)
T 3tnu_A 81 ---QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQE 120 (131)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334688899999999987765432 344555554
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=73.05 E-value=1.2e+02 Score=33.73 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=1.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 012498 58 AGLEQEIEILKQKIAACARENSNLQEELSE 87 (462)
Q Consensus 58 a~LEQeiE~Lkkkl~~c~ren~nLQEELsE 87 (462)
..||..|+.|+.+|..-..+|..|++++..
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~ 953 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953 (1080)
T ss_dssp ---------------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899999998888999999887653
No 15
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=72.37 E-value=6.4 Score=31.72 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 012498 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (462)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQs 253 (462)
++=+.|..+|.-.|.+.+-+-..|.++|- .+-.||..|++++..+...++.|+.
T Consensus 20 ~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~------------~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 20 ELKRSFFALRDQIPELENNEKAPKVVILK------------KATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHTTCGGGTTCTTCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568999999888775444556666652 2557999999999888887776554
No 16
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=72.02 E-value=20 Score=28.16 Aligned_cols=84 Identities=8% Similarity=0.164 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhccccccc
Q 012498 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEM 222 (462)
Q Consensus 143 ~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~ 222 (462)
.++.+|+.++.++..+.+.+...+ .++... ..|++ +-..+..+.+|--++++.-.
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~-------~~~~e~-------~~~~~----------EL~~l~~d~~vy~~iG~vfv- 59 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVE-------MQINET-------QKALE----------ELSRAADDAEVYKSSGNILI- 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHHSCTTCCEEEEETTEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHcCCCCchHHHHHhHHHH-
Confidence 467788888888887776653332 222222 12222 11223334455555544333
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 012498 223 WSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 223 Wsfn~tstskyisaLEeE~e~lr~~i~~LQskL 255 (462)
-.+...++..|+...+.+...|+.|..++
T Consensus 60 ----~~~~~e~~~~L~~~~e~i~~~i~~le~~~ 88 (107)
T 1fxk_A 60 ----RVAKDELTEELQEKLETLQLREKTIERQE 88 (107)
T ss_dssp ----EECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456666677766666666666665554
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.93 E-value=1e+02 Score=34.29 Aligned_cols=14 Identities=50% Similarity=0.835 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 012498 25 ERDELRKDIEQLCM 38 (462)
Q Consensus 25 ERdEL~KDIEqLCM 38 (462)
|..+|++|++.+-.
T Consensus 961 e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 961 ETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 18
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=71.46 E-value=45 Score=28.02 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 012498 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQ 112 (462)
Q Consensus 60 LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~Kn~e~Ekq 112 (462)
.+.+|+.|++++...+.+|-.|+-|+..+-..=..+-.-|..|+.+...+|.+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~d 70 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47789999999999999999998887765322222212244555555555543
No 19
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=70.62 E-value=15 Score=37.40 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=33.3
Q ss_pred HhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 012498 252 QSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNS 304 (462)
Q Consensus 252 QskLR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~l 304 (462)
..++...-..+|-...-...||++++++++-|.+.|..|+-.-...|+...+|
T Consensus 98 k~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~ki 150 (390)
T 1deq_A 98 RGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDM 150 (390)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333344455555555668888888888888887777766655555544444
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=70.37 E-value=60 Score=29.07 Aligned_cols=121 Identities=17% Similarity=0.282 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHH
Q 012498 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE 139 (462)
Q Consensus 60 LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFAERD~slmEaEkaKE 139 (462)
+|.+++.-..++.....-...|.++|--+-+--..|----...--+-...|.++|+.+...- ||| -
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLK-----------EAE---~ 91 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK-----------EAE---T 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHH---H
Confidence 88888888888888888888888888766543333333333444455566777777664432 222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHh
Q 012498 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIR 197 (462)
Q Consensus 140 ~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR 197 (462)
+.+..-..++.++.-+..++-.+...|.-+..++.+|..--.. +..+--+||.+-
T Consensus 92 RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e---l~~~~~~~~~~~ 146 (155)
T 2efr_A 92 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK---VEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccchHHHH
Confidence 2223334445555555555555666666666666655532211 223456777654
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.18 E-value=2.4e+02 Score=35.50 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=17.6
Q ss_pred HHHhhHHHHHhhhhhHHHHHHHHH
Q 012498 46 LAVATRMHFQRTAGLEQEIEILKQ 69 (462)
Q Consensus 46 l~vATRM~~qRta~LEQeiE~Lkk 69 (462)
|.....|+.++...++..+..|+.
T Consensus 1901 i~~y~~ll~~K~~el~~~~~rl~~ 1924 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQLHLNI 1924 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888777777764
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=69.07 E-value=70 Score=29.27 Aligned_cols=125 Identities=15% Similarity=0.219 Sum_probs=86.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhh
Q 012498 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA 213 (462)
Q Consensus 134 aEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs 213 (462)
+.|.|-..-.++...+.++.-++|++..+.-.....+.|+.+++.+-.+++. |-|.++.-- ++
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q---------Er~~r~q~s-e~------- 91 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA---------ERRDRGHDS-EM------- 91 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HH-------
Confidence 4466666677888889999999999999999999999999999999888872 112211100 00
Q ss_pred hhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHh
Q 012498 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 293 (462)
Q Consensus 214 ~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~ 293 (462)
+ +.+..-|.+|++|++.++.+..+....- ++|..++..|||...-+.==+.=.|-.+|+-
T Consensus 92 --~-----------~elq~ri~~L~~El~~~k~~~~k~~~e~-------r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 92 --I-----------GDLQARITSLQEEVKHLKHNLEKVEGER-------KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp --H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 0 0123367888888888888777766544 4689999999998877553333455666654
Q ss_pred hh
Q 012498 294 HS 295 (462)
Q Consensus 294 h~ 295 (462)
|-
T Consensus 152 ~e 153 (168)
T 3o0z_A 152 LE 153 (168)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=68.36 E-value=8.3 Score=30.50 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 012498 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 189 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQskL 255 (462)
+=+.|.++|.-.|.| -+-.+|+++|- .+-.||..|+.++..|....+.|+..+
T Consensus 21 in~~f~~L~~lvP~~--~~k~~Ka~IL~------------~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 21 INDKIIELKDLVVGT--EAKLNKSAVLR------------KAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHTCS--SCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC--CCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888877754 23445666552 256799999999999998888887654
No 24
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=67.52 E-value=19 Score=28.27 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 012498 13 EALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENSN 80 (462)
Q Consensus 13 e~l~~RI~qLe~ERdEL~KDIEqL--------CMQQaGpgyl----~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~n 80 (462)
..+...|++++.+..++..=++.| |.-..||-|| +-|.-.+-.|...++.+|+.|.+++..+..+=..
T Consensus 18 ~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 18 QAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777666655433333 8888998875 4577888999999999999999988877666666
Q ss_pred hHHHHH
Q 012498 81 LQEELS 86 (462)
Q Consensus 81 LQEELs 86 (462)
|+..|-
T Consensus 98 lk~~l~ 103 (107)
T 1fxk_A 98 MQVNIQ 103 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 25
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=65.58 E-value=58 Score=33.60 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHH
Q 012498 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK 281 (462)
Q Consensus 230 tskyisaLEeE~e~lr~~i~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk 281 (462)
.++|-..++..++.|++.++.|-+.-.-..++.++|+......|++.--+..
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n 142 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDI 142 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhh
Confidence 6788888888888888888888877777777777877777666665433333
No 26
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=64.67 E-value=13 Score=28.97 Aligned_cols=54 Identities=11% Similarity=0.274 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhh
Q 012498 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 254 (462)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQsk 254 (462)
++=+.|.++|.-.|.|.+ +-.+|.++|- .+-.||..|++++..+...++.|...
T Consensus 16 ~in~~f~~Lr~lvP~~~~-~k~sK~~iL~------------~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 16 HIKDSFHSLRDSVPSLQG-EKASRAQILD------------KATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHTTSGGGTT-SCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCC-CCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678889988887642 1234544442 36679999998888887777666543
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.55 E-value=36 Score=29.54 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012498 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (462)
Q Consensus 132 mEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~ 162 (462)
|+.+.++..-+..-.+++.++.++.++++.+
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333444455555555555555444
No 28
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.38 E-value=11 Score=29.46 Aligned_cols=53 Identities=11% Similarity=0.268 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 012498 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (462)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQs 253 (462)
++=..|.++|.-.|.+.+. -..|.++|- .+-.||..|++++..|...++.|+.
T Consensus 26 ~in~~f~~Lr~lvP~~~~~-k~sK~~iL~------------~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 26 HIKDSFHSLRDSVPSLQGE-KASRAQILD------------KATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHSGGGTTS-CCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCcCCCCC-CccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445788899888876421 234444442 3677999999999999999988864
No 29
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=61.88 E-value=26 Score=29.13 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHH--------hhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 012498 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQ--------RTAGLEQEIEILKQKIAACARENSNLQE 83 (462)
Q Consensus 12 ~e~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~q--------Rta~LEQeiE~Lkkkl~~c~ren~nLQE 83 (462)
+=+...|...|++..++|++||++-=-+.-| .++|+-- =...++++|..+.++|...-.
T Consensus 10 ~LPpeqRkkkL~~Ki~el~~ei~ke~~~reg------l~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~------- 76 (98)
T 2ke4_A 10 HLPPEQQRKRLQQQLEERSRELQKEVDQREA------LKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKL------- 76 (98)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH------HHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHH-------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHH-------
Confidence 4457899999999999999999997655444 2333211 122235555555555443322
Q ss_pred HHHHHHHHHHHHHHH
Q 012498 84 ELSEAYRIKGQLADL 98 (462)
Q Consensus 84 ELsEAYRiK~qLadL 98 (462)
+.|++...|+++
T Consensus 77 ---el~K~q~~L~e~ 88 (98)
T 2ke4_A 77 ---EVQKYEAWLAEA 88 (98)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
Confidence 456777777776
No 30
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=61.75 E-value=57 Score=27.95 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=51.1
Q ss_pred HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhH
Q 012498 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (462)
Q Consensus 124 FAERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e 184 (462)
--|+-+-+-+++-.|-+=|.|-..+++++...+|-.+.+..+|+..+.|+.++..++++..
T Consensus 22 DNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 22 DNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567788888888888889999999999999999999999999999999988754
No 31
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=60.96 E-value=23 Score=30.72 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCchHHHhhHHHHHhhhh--hHHHHHHHHHHHHHhhhhhcch
Q 012498 12 SEALMARIQQLEHERDELRKDIEQLCM--QQAGPSYLAVATRMHFQRTAG--LEQEIEILKQKIAACARENSNL 81 (462)
Q Consensus 12 ~e~l~~RI~qLe~ERdEL~KDIEqLCM--QQaGpgyl~vATRM~~qRta~--LEQeiE~Lkkkl~~c~ren~nL 81 (462)
.+.-+..|..|..|...+++|+|++=| ||+-+ | -...++.|++- +-.+++.|+.+++...|.|..|
T Consensus 40 L~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~I-Y---~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 40 LVAKQELIDKLKEEAEQHKIVMETVPVLKAQADI-Y---KADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 344566777788888888899998877 56532 3 34567778763 7788999999999888888765
No 32
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=59.35 E-value=10 Score=30.01 Aligned_cols=32 Identities=34% Similarity=0.675 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcC
Q 012498 10 NESEALMARIQQLEHERD----ELRKDIEQLCMQQAG 42 (462)
Q Consensus 10 ~~~e~l~~RI~qLe~ERd----EL~KDIEqLCMQQaG 42 (462)
.+.+..+.++..||.||| .|| |||-+|-+.-|
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLR-diE~l~q~~e~ 51 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLR-NIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHh
Confidence 356778899999999999 775 89999987554
No 33
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=58.13 E-value=15 Score=29.29 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 012498 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQskL 255 (462)
++=+.|+.+|.-.|.+.+.+-..|.++| . ..-.||..|+++...+...++.|+...
T Consensus 15 ~lk~~f~~Lr~~vP~~~~~~k~sk~~iL-~-----------kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 15 HLRLSLEKLKGLVPLGPDSSRHTTLSLL-T-----------KAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHSSCCCSSSCCCTTHHHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCHHHHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446899999988866333222233332 1 244699999999888887777666543
No 34
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=57.94 E-value=38 Score=27.05 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=27.7
Q ss_pred HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 012498 37 CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (462)
Q Consensus 37 CMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELs 86 (462)
|.|.-.|.+..-.-.-+-.+...+..+|..|+.++..+.++-..|..++.
T Consensus 53 Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 53 CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433222234445566666677777777777666666655555
No 35
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=54.82 E-value=16 Score=38.58 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=29.6
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh----------hHHHHHhhhhhh
Q 012498 72 AACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQG----------CMAAAFAERDNS 130 (462)
Q Consensus 72 ~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs----------~vA~AFAERD~s 130 (462)
...-|++...+.||.+|- +. -.-++...-|-|+||+| .||.|.|++|+-
T Consensus 317 ~~Aer~~e~a~ael~~a~-------k~---~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f 375 (551)
T 2b5u_A 317 EAAERNYERARAELNQAN-------ED---VARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQF 375 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhh
Confidence 444555555556666551 11 11223344578899999 888888888764
No 36
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.35 E-value=39 Score=26.96 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhh
Q 012498 232 KYISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 232 kyisaLEeE~e~lr~~i~~LQskL 255 (462)
..|+..+.++..+++.+..|...+
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i 87 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRK 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555443
No 37
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=53.40 E-value=13 Score=26.97 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 012498 230 TSKYISALEDELEKTRSSVENLQSKLR 256 (462)
Q Consensus 230 tskyisaLEeE~e~lr~~i~~LQskLR 256 (462)
..+||..|+..++.|...|..|++.|.
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999998763
No 38
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.98 E-value=84 Score=24.89 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccc
Q 012498 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAE 221 (462)
Q Consensus 142 e~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~ 221 (462)
..++.+|+.++.++..+.+.+...+ .++... ..|++ +-..+..+.+|-.++.+.-.
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~-------~~~~e~-------~~~~~----------eL~~l~~d~~vy~~iG~vfv 64 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQ-------LELTEA-------KKALD----------EIESLPDDAVVYKTVGTLIV 64 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHTSCTTCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHcCCCCcHhHHHhhHHHh
Confidence 3566788888888887766664332 222222 12332 11223334455555554333
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 012498 222 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 222 ~Wsfn~tstskyisaLEeE~e~lr~~i~~LQskL 255 (462)
-.+...++..|+...+.+...|..|..++
T Consensus 65 -----~~~~~ea~~~L~~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 65 -----KTTKDKAVAELKEKIETLEVRLNALERQE 93 (117)
T ss_dssp -----EECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776666554
No 39
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=51.34 E-value=44 Score=32.13 Aligned_cols=56 Identities=25% Similarity=0.239 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh------hHHHHHHHH
Q 012498 383 SETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVT------TEKVKALME 441 (462)
Q Consensus 383 s~alAqAL~EKveALlLlSQqeER~llE~~~n~~lq~~ieeLqrnl~QVt------~EKVkaLmE 441 (462)
.+..+..+++++.++|==...+. =-+|+++.||+++.++|+|+.|+. |--|-+||+
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVM---EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 432 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH---HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
Confidence 34445677888888763222221 125999999999999999999975 345666775
No 40
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=50.63 E-value=1.3e+02 Score=26.21 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=24.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 012498 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (462)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadL 98 (462)
|-.+||++++.|.+ .|+.-+.+|=.+|=.-...|++.
T Consensus 10 ~l~~Leae~q~L~~------~E~qry~~eka~AE~A~~~La~~ 46 (119)
T 3etw_A 10 ELQALDAEYQNLAN------QEEARFNEERAQADAARQALAQN 46 (119)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777776 46666666666666666666654
No 41
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=46.95 E-value=40 Score=25.79 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=34.6
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 012498 268 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 306 (462)
Q Consensus 268 ~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ 306 (462)
++.+|+.+.+.+|..|.--|.+|+..|...|.=|...++
T Consensus 11 s~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 11 TVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 456788888999999999999999999999998887765
No 42
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.95 E-value=96 Score=25.66 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=36.2
Q ss_pred HHHHhhhhhhhHHHHHhHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHh
Q 012498 121 AAAFAERDNSVMEAEKAKEKEE----LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (462)
Q Consensus 121 A~AFAERD~slmEaEkaKE~Ee----~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~ 185 (462)
|-+|++-|-++.|+--|=+.|- .++.++..+..-.--.+|.+.+-+..|..|++++..++++++-
T Consensus 2 ~~~~~~~~~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 2 AMAEAEAEVTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777666555443 3333444443333445566666666788888898888888773
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.94 E-value=57 Score=24.60 Aligned_cols=47 Identities=28% Similarity=0.223 Sum_probs=37.5
Q ss_pred HHHHhhhHHHH------HHHHHHHHhhhhhhhHHHHHHHHHHhHHHHHHHhhh
Q 012498 408 LLERNVNSALQ------KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454 (462)
Q Consensus 408 llE~~~n~~lq------~~ieeLqrnl~QVt~EKVkaLmElAqLkq~y~lL~~ 454 (462)
-+|+|..+|-. ..|.+|+....+.+.+.-..-.+++.|++++..|++
T Consensus 6 rrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 6 RRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777652 238889998888888888888999999999988874
No 44
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=45.88 E-value=1.4e+02 Score=25.53 Aligned_cols=63 Identities=25% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhh----hcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 012498 53 HFQRTAGLEQEIEILKQKIAACARE----NSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKF 115 (462)
Q Consensus 53 ~~qRta~LEQeiE~Lkkkl~~c~re----n~nLQEELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkF 115 (462)
+-.+.+.|..|++.+|.|+....++ ...||.|+....-.+..|..--+-==-+|-.+|.+-|-
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3445556666666666666666554 33466666665555554442111112246666655444
No 45
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.58 E-value=93 Score=26.99 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 012498 57 TAGLEQEIEILKQKIAACARENSNLQEELS 86 (462)
Q Consensus 57 ta~LEQeiE~Lkkkl~~c~ren~nLQEELs 86 (462)
...+.++++.|++++..+.+++..|+-+|-
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666665554
No 46
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.20 E-value=82 Score=23.39 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=36.2
Q ss_pred HHHHhhhHHHH------HHHHHHHHhhhhhhhHHHHHHHHHHhHHHHHHHhhh
Q 012498 408 LLERNVNSALQ------KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454 (462)
Q Consensus 408 llE~~~n~~lq------~~ieeLqrnl~QVt~EKVkaLmElAqLkq~y~lL~~ 454 (462)
.+|+|..+|.. ..+++|+......+.+.-..-.++..|+.+...|+.
T Consensus 5 r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 5 FLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777753 237888888888888888888888888888887764
No 47
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=42.01 E-value=2.7e+02 Score=28.40 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=54.0
Q ss_pred ccccccCCc------chHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHh-------------------HHhHHHHHH
Q 012498 220 AEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHL-------------------KKSVRELEK 274 (462)
Q Consensus 220 ~~~Wsfn~t------stskyisaLEeE~e~lr~~i~~LQskLR~GLeIenhL-------------------kk~vr~Lek 274 (462)
.+..+|+-| -.+||-......+..|...|+.+-|.=.-..+.-++| ++.-..||+
T Consensus 13 ~~fG~~CPTtCgl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~ 92 (411)
T 3ghg_C 13 ERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEE 92 (411)
T ss_dssp -CCSCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCCCcchHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHH
Confidence 345667632 3677766666666666666666655444444444444 222335555
Q ss_pred hhhhhHHHH---HHHHHHHHHhhhHHHHHHHHhhhhcchhhhhhHHHHHhhh-ccccc
Q 012498 275 KIIHSDKFI---SNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT-QHCDD 328 (462)
Q Consensus 275 kqi~~dk~i---~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ieekl-~~~~n 328 (462)
+..+ +..| .+-|..|+.-....+..| ..|+..|..++.+. +-|.+
T Consensus 93 ~~~~-~~~~~~~~~~i~~l~~~~~~~~~~i--------~~L~~~v~~l~~~~~~~~~~ 141 (411)
T 3ghg_C 93 IMKY-EASILTHDSSIRYLQEIYNSNNQKI--------VNLKEKVAQLEAQCQEPCKD 141 (411)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSCSCCEE
T ss_pred HHHH-HHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcccCCc
Confidence 5544 4444 556666666555554444 44556666666666 44443
No 48
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.96 E-value=2e+02 Score=26.18 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 012498 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (462)
Q Consensus 15 l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEA 88 (462)
+-.+|..|+|.|.+|.+.|..| -.+.+++...++.++..+....++-..+..++.++
T Consensus 16 lD~~i~~l~~~~~~lp~el~~l-----------------e~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKA-----------------LNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666665555433 23445566666666666666666655565555543
No 49
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=41.12 E-value=73 Score=23.75 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhHHHHHhhhhh---hHHH-HHHhHHhHHHHHHh
Q 012498 236 ALEDELEKTRSSVENLQSKLRM---GLEI-ENHLKKSVRELEKK 275 (462)
Q Consensus 236 aLEeE~e~lr~~i~~LQskLR~---GLeI-enhLkk~vr~Lekk 275 (462)
.+|+-++.|.++++.||.++.= .++- ...||.++-.||++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788899999999999988642 1221 23378888888864
No 50
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=40.84 E-value=1.1e+02 Score=32.16 Aligned_cols=45 Identities=11% Similarity=0.342 Sum_probs=27.2
Q ss_pred HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 012498 259 LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVN 303 (462)
Q Consensus 259 LeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~ 303 (462)
-..+|-...-...||+++++++.-|-+.|.-|+-.-.-.|+...+
T Consensus 103 ~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~sk 147 (491)
T 1m1j_A 103 QQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVE 147 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556788888888877777776665554444444333
No 51
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=40.73 E-value=36 Score=23.67 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhh
Q 012498 230 TSKYISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 230 tskyisaLEeE~e~lr~~i~~LQskL 255 (462)
....+++||-|+..|+++++.|-.|+
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999886553
No 52
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=40.72 E-value=68 Score=32.41 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012498 13 EALMARIQQLEHERDELRKDIEQL 36 (462)
Q Consensus 13 e~l~~RI~qLe~ERdEL~KDIEqL 36 (462)
=.+..+|++++.|||+|..-++..
T Consensus 12 l~id~~I~~i~~eRd~La~~lq~~ 35 (355)
T 3etv_A 12 LNINDRIKQVQNERNELASKLQNL 35 (355)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999887664
No 53
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=39.17 E-value=96 Score=26.27 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=36.7
Q ss_pred CchHHHHHHHHHHHHHHHhhcHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 012498 381 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 431 (462)
Q Consensus 381 d~s~alAqAL~EKveALlLlSQqeER~llE~~~n~~lq~~ieeLqrnl~QV 431 (462)
+.=..+|.-||+++..| ++|||=||..+..-- ..|.+|...+.++
T Consensus 45 ~~L~e~~keLh~~I~~l-----EeEKYDlE~kv~kq~-yEI~eL~~rV~dl 89 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQL-----QTEKYDFAEQIKRKK-YEIVTLRNRIDQA 89 (107)
T ss_dssp SHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHhhh-hHHHHHHHHHHHh
Confidence 45678999999999875 899999999998763 3589998877765
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.77 E-value=49 Score=35.18 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=45.9
Q ss_pred HHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhH--HHHHHHHH-HHHHhhhHHHHHHHHhhhhcchhhhhhHH
Q 012498 241 LEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSD--KFISNAIA-ELRLCHSQLRVHVVNSLEEGRSHIKSISD 317 (462)
Q Consensus 241 ~e~lr~~i~~LQskLR~GLeIenhLkk~vr~Lekkqi~~d--k~i~ngi~-~lq~~h~~~R~~Im~lL~ee~s~i~s~v~ 317 (462)
++.||++++.+|.+= -.|+++.+.-...|.+++.... .-..|-++ +|++.|...+..|.+-+ .--.-|.++|.
T Consensus 66 INELKnqLEdlsKns---Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQsnLe 141 (562)
T 3ghg_A 66 INKLKNSLFEYQKNN---KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHTHHHHHH---HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 455555555553332 3566666666666666554422 12445666 78888888888887777 33344555555
Q ss_pred HHHhhh
Q 012498 318 VIEEKT 323 (462)
Q Consensus 318 ~ieekl 323 (462)
.+--+|
T Consensus 142 dq~~kI 147 (562)
T 3ghg_A 142 AQLVDM 147 (562)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
No 55
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.07 E-value=80 Score=23.79 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHH
Q 012498 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (462)
Q Consensus 153 ~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI 190 (462)
.++.+++......+..|..|+.++..+.++...+..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666777778888888888877777665554
No 56
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.94 E-value=1.2e+02 Score=25.47 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=28.5
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhH
Q 012498 126 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (462)
Q Consensus 126 ERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl 176 (462)
|||..+=.|=+++.--+..-.++.++..++.+.++.+.+..+.|..||++.
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~ 55 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKH 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 555554444444432333345566666666666666666666666666553
No 57
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.70 E-value=71 Score=26.00 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=36.4
Q ss_pred HhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhHHHHHHHhh
Q 012498 411 RNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 453 (462)
Q Consensus 411 ~~~n~~lq~~ieeLqrnl~QVt~EKVkaLmElAqLkq~y~lL~ 453 (462)
++.....+..|.+|++.|..++.+|.++..|+..|..+...++
T Consensus 48 ~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 48 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778999999999999999999999999988876654
No 58
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=37.19 E-value=17 Score=25.61 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 012498 234 ISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 234 isaLEeE~e~lr~~i~~LQskL 255 (462)
||.|||++..|.+-+.+||.++
T Consensus 1 isrlee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 4678999998888888887654
No 59
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.39 E-value=78 Score=23.52 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=20.3
Q ss_pred HHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHH
Q 012498 155 LEELSSENIELKKQNATLRFDLEKQEELNESFKEV 189 (462)
Q Consensus 155 ~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kV 189 (462)
+.+++.........|..|+.++..+.+++..+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455556666677777776666655443
No 60
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.75 E-value=71 Score=24.27 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=20.9
Q ss_pred HHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHH
Q 012498 154 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (462)
Q Consensus 154 R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI 190 (462)
++.+++....+.+.-|+.|...+..++.++..+..+|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666666555544
No 61
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.58 E-value=1.6e+02 Score=23.01 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhH
Q 012498 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186 (462)
Q Consensus 132 mEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~ 186 (462)
.|.+.|.++-+..-+++.+.+.|....++.+...++-+..|+.|+....+.....
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888899999999999999999888888888888888888776633
No 62
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.30 E-value=1.6e+02 Score=22.98 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 012498 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (462)
Q Consensus 14 ~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEA 88 (462)
++..+|++|+.+-|...-..+++--+- +---.|...+|++|..|++|+..+--+=...++.|..|
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l----------~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADK----------KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888777777666654321 22235777888888888888766555555555544443
No 63
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=35.09 E-value=1.5e+02 Score=24.97 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhH
Q 012498 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (462)
Q Consensus 140 ~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e 184 (462)
+.-.+..++.++++|+++.+..+...-.-...|+.+...++.+.+
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777666666666677777766666655
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.04 E-value=1e+02 Score=32.90 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHH-----------HhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhHHH
Q 012498 230 TSKYISALEDELEKTR-----------SSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLR 298 (462)
Q Consensus 230 tskyisaLEeE~e~lr-----------~~i~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R 298 (462)
.-+.|.-|-.+++.+. +..+.|+.++...-..+|....-..+|++++.+++.=|-|-|+-|+..-.-.|
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLe 141 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777766553 55667777777777888877776779999999988888888777766655555
Q ss_pred HHHHHhh
Q 012498 299 VHVVNSL 305 (462)
Q Consensus 299 ~~Im~lL 305 (462)
+.+.+|.
T Consensus 142 dq~~kIQ 148 (562)
T 3ghg_A 142 AQLVDMK 148 (562)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 65
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.93 E-value=21 Score=24.38 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 012498 234 ISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 234 isaLEeE~e~lr~~i~~LQskL 255 (462)
|.|||=|+|.|..+|+-|.+|+
T Consensus 2 idalefendaleqkiaalkqki 23 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHH
Confidence 5678888888888888887765
No 66
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=32.29 E-value=94 Score=26.34 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHHHHHHHhhcHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 012498 381 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 431 (462)
Q Consensus 381 d~s~alAqAL~EKveALlLlSQqeER~llE~~~n~~lq~~ieeLqrnl~QV 431 (462)
+.=..+|.-||+++..| ++|||=||..+..-- ..|.+|...+.++
T Consensus 45 ~~L~e~~keLh~~I~~L-----EeEKYDlE~kv~kq~-yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNL-----EAEKFDLQEKFKQQK-YEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH-----HHhhhhHHHHHHhhh-HHHHHHHHHHHHh
Confidence 34567899999998775 899999999998763 3599998888886
No 67
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=31.78 E-value=3.1e+02 Score=25.29 Aligned_cols=93 Identities=22% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHh----hHhHHHHHHHHHHHhhhhhhhhcccccchhh
Q 012498 138 KEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL----NESFKEVINKFYEIRQQSLEVLETSWEDKCA 213 (462)
Q Consensus 138 KE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq----~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs 213 (462)
+|-|..|-+.+...++|.+.+++.+...+.-.+.+...+.....+ ...+.+=|..+=..+.
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~--------------- 105 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKE--------------- 105 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred hhccccccccccCCcchHHHHHHHHHHHHHHH-------HhHHHHHhhhhhhHH
Q 012498 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTR-------SSVENLQSKLRMGLE 260 (462)
Q Consensus 214 ~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr-------~~i~~LQskLR~GLe 260 (462)
+..+||-.||..||.+- +++.-+++++-..+|
T Consensus 106 ---------------~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiE 144 (189)
T 2v71_A 106 ---------------QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIE 144 (189)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHH
No 68
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.66 E-value=2.2e+02 Score=23.25 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------cCCch-----HHHhhHHHHH
Q 012498 11 ESEALMARIQQLEHERDELRKDIEQLCMQQ------------------------------AGPSY-----LAVATRMHFQ 55 (462)
Q Consensus 11 ~~e~l~~RI~qLe~ERdEL~KDIEqLCMQQ------------------------------aGpgy-----l~vATRM~~q 55 (462)
..+.+..++.+|+....++.+=++.|-.=. -|.|| ++=|...+-.
T Consensus 16 ~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ 95 (133)
T 1fxk_C 16 QVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKS 95 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHH
Confidence 356788888888888888887777665422 23344 2346677888
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 012498 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (462)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAY 89 (462)
|...|+..++++++.+......-..+++.|.+.+
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888887777666666777776665
No 69
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=30.42 E-value=1.8e+02 Score=23.95 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhH--------hHhhhHHHHHHhhHhHHHHHHHHHHHhhhh
Q 012498 144 MSQKFNEFQTRLEELSSENIELKKQNA--------TLRFDLEKQEELNESFKEVINKFYEIRQQS 200 (462)
Q Consensus 144 m~qk~~~~~~R~~E~~s~~~~qk~~n~--------aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~ 200 (462)
+.+.+++|+.|+..|.+.+.+.++.=. +.|.=...+..+.++|.-+..+...|-.+.
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V 74 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENV 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999888887665421 234445677888888888888888776544
No 70
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.91 E-value=1.1e+02 Score=22.75 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhHHHHHHHhhh
Q 012498 420 KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454 (462)
Q Consensus 420 ~ieeLqrnl~QVt~EKVkaLmElAqLkq~y~lL~~ 454 (462)
.|.+|+......+.+.-..-.++..|+.+...|++
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999988874
No 71
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.90 E-value=1.6e+02 Score=22.20 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=33.7
Q ss_pred HHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHH
Q 012498 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 193 (462)
Q Consensus 152 ~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KF 193 (462)
+.|+.+++..+...-..|..|-.-|..-..+...+...|+++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888888888888888888888888888764
No 72
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.67 E-value=61 Score=24.63 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 012498 11 ESEALMARIQQLEHERDELRKDIEQL 36 (462)
Q Consensus 11 ~~e~l~~RI~qLe~ERdEL~KDIEqL 36 (462)
-+..|..||++|++-++++...||.|
T Consensus 12 ~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 12 INIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 46788889999988887776666554
No 73
>3ssb_C IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=28.79 E-value=16 Score=26.75 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.3
Q ss_pred ccccccccceeccCCC
Q 012498 344 LDEFECRDVHINNDAD 359 (462)
Q Consensus 344 ~~e~ec~dVhv~~d~~ 359 (462)
-|+++|+|+|+-+...
T Consensus 20 ac~n~c~~~~~qn~t~ 35 (40)
T 3ssb_C 20 ACDNVCADLHIQNKTN 35 (40)
T ss_dssp SCCCBGGGTTTCCSSS
T ss_pred hHhhhhhhhhcccccC
Confidence 5899999999987643
No 74
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.21 E-value=2.4e+02 Score=22.94 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 012498 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (462)
Q Consensus 13 e~l~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEA 88 (462)
+.+..+|+.|..+-|...-..+++. .--+=.-+|...+|++|..|++|+...-.+=..+++.|.+|
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e----------~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAE----------ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 75
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.96 E-value=1.4e+02 Score=22.20 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhh
Q 012498 232 KYISALEDELEKTRSSVENLQSKLR 256 (462)
Q Consensus 232 kyisaLEeE~e~lr~~i~~LQskLR 256 (462)
.|++.||.....+....+.|.+++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999998888887777776553
No 76
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=27.63 E-value=31 Score=29.07 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhhhhhhcc-cccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHH-hH
Q 012498 189 VINKFYEIRQQSLEVLET-SWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENH-LK 266 (462)
Q Consensus 189 VI~KFyeiR~~~~e~~~~-s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQskLR~GLeIenh-Lk 266 (462)
+=++|.++|.-.|.|.+. .--+|.+||- .+-.||..|+.++..+......+. -|+-.|. |.
T Consensus 42 In~~~~~L~~lvP~~~~~~~k~~Ka~IL~------------~aieYIk~Lq~~~~~l~~~~~~~~-----~l~~~n~~L~ 104 (118)
T 4ati_A 42 INDRIKELGTLIPKSNDPDMRWNKGTILK------------ASVDYIRKLQREQQRAKDLENRQK-----KLEHANRHLL 104 (118)
T ss_dssp HHHHHHHHHHHSCCC----CCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHhhccCccccCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 335788999988887432 1234555542 266799999999988875422211 1333333 66
Q ss_pred HhHHHHHH
Q 012498 267 KSVRELEK 274 (462)
Q Consensus 267 k~vr~Lek 274 (462)
.++.+||.
T Consensus 105 ~riqeLE~ 112 (118)
T 4ati_A 105 LRVQELEM 112 (118)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 67777765
No 77
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.61 E-value=2.9e+02 Score=23.63 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=24.0
Q ss_pred HHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHH
Q 012498 262 ENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299 (462)
Q Consensus 262 enhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~ 299 (462)
-..|++.+|.||.+.--+..--|+..+.|.-+.+.+=.
T Consensus 51 ~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ 88 (111)
T 2v66_B 51 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence 33466777888887766666566666666665555433
No 78
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=27.39 E-value=1.8e+02 Score=28.00 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHH
Q 012498 229 STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFIS 284 (462)
Q Consensus 229 stskyisaLEeE~e~lr~~i~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk~i~ 284 (462)
...+|++.|+++++.+.+.++++..++.-.-.- .=.+++.+.++++....++-|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKALKDIEKRPEN-KKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999887321100 0134555566665555554443
No 79
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.10 E-value=1.6e+02 Score=25.17 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 012498 19 IQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (462)
Q Consensus 19 I~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEA 88 (462)
|.+|.+|-+.|+..+|.+ ++-+.|.- .=+--|...||.|++.-+....-..-||..|..|+...
T Consensus 17 Ie~Lkreie~lk~ele~l-~~E~q~~v-----~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 17 IERLYREISGLKAQLENM-KTESQRVV-----LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 80
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=26.95 E-value=60 Score=22.62 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=13.8
Q ss_pred hhhhhc-cccccccccCCcchH
Q 012498 211 KCACLL-LDSAEMWSFNDTSTS 231 (462)
Q Consensus 211 Kcs~LL-~Ds~~~Wsfn~tsts 231 (462)
-..+.+ +.+.++|+|+|.+.+
T Consensus 38 ~v~V~i~e~~~~~w~~gG~~~~ 59 (64)
T 3abf_A 38 EVRVILYEVRRDQWAAGGVLFS 59 (64)
T ss_dssp GEEEEEEEECGGGEEETTEEHH
T ss_pred cEEEEEEEcCHHHeeECCEEhH
Confidence 344444 456679999998544
No 81
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=26.87 E-value=2.2e+02 Score=29.66 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=37.2
Q ss_pred HHhhhh--HHHHHhhhhhhhHHHHHhHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhh
Q 012498 114 KFFQGC--MAAAFAERDNSVMEAEKAKEKEEL----MSQKFNEFQTRLEELSSENIELKKQ 168 (462)
Q Consensus 114 kFfQs~--vA~AFAERD~slmEaEkaKE~Ee~----m~qk~~~~~~R~~E~~s~~~~qk~~ 168 (462)
.|+++. ++.+|---|.+|.+.||+.+.|.+ +-++-..++++.++++..|..|++.
T Consensus 463 ~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~ 523 (592)
T 1f5n_A 463 TYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523 (592)
T ss_dssp HHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466654 567888889999888877655543 5555566666666677667666543
No 82
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.83 E-value=1.3e+02 Score=24.39 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHHHHHhhhhh---hHHH-HHHhHHhHHHHHHhhh
Q 012498 236 ALEDELEKTRSSVENLQSKLRM---GLEI-ENHLKKSVRELEKKII 277 (462)
Q Consensus 236 aLEeE~e~lr~~i~~LQskLR~---GLeI-enhLkk~vr~Lekkqi 277 (462)
.||+-++.|.++++.||.++.= .++- ...||.++-.||++-.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788899999999999987642 1221 2237777777777543
No 83
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.46 E-value=2.1e+02 Score=29.79 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=45.4
Q ss_pred hhhhhccccccccccCCc------chHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhh
Q 012498 211 KCACLLLDSAEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 276 (462)
Q Consensus 211 Kcs~LL~Ds~~~Wsfn~t------stskyisaLEeE~e~lr~~i~~LQskLR~GLeIenhLkk~vr~Lekkq 276 (462)
-..|+..| .++.+|+-| -.+||-......+..|+..|+.+-|.=.-..+.-++|+-..+.-|+..
T Consensus 62 ~g~c~~~~-~~fG~yCPTtCglad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~ 132 (461)
T 3ghg_B 62 AGGCLHAD-PDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQV 132 (461)
T ss_dssp CCCCBCSS-TTTCBCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCCccccC-cccCCcCCCcchHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCC
Confidence 34455444 356788733 478888888888888888888887777777777788776666555443
No 84
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.94 E-value=65 Score=24.07 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=21.2
Q ss_pred HHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHH
Q 012498 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (462)
Q Consensus 153 ~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~k 188 (462)
.++.+++.........|..|..++..+.+++..+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556667777777777766664443
No 85
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=25.50 E-value=1.8e+02 Score=27.13 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--chHHH----------------hhHHHHHhhhhhHHHHHHHHHHH
Q 012498 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG-P--SYLAV----------------ATRMHFQRTAGLEQEIEILKQKI 71 (462)
Q Consensus 11 ~~e~l~~RI~qLe~ERdEL~KDIEqLCMQQaG-p--gyl~v----------------ATRM~~qRta~LEQeiE~Lkkkl 71 (462)
..+.|..++...-..-....+.|-+||.-++| | .|+.. ..++|+.....+..+|..++.+|
T Consensus 156 ~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~fi~~f~g~e~~~~w~~~~~~~~~~~~~~l~~~~~~i~~~q~kl 235 (339)
T 1sig_A 156 QFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKL 235 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHTTTCSSGGGTHHHHTTCSHHHHHGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCcHHHHHHHhhccchHHHHHHHhHHHHHHHHHHH
Confidence 35667777777777778888999999998888 2 23332 34578888888888888888887
Q ss_pred HHhhhh
Q 012498 72 AACARE 77 (462)
Q Consensus 72 ~~c~re 77 (462)
...-.+
T Consensus 236 ~~ie~~ 241 (339)
T 1sig_A 236 QQIEEE 241 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765433
No 86
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.93 E-value=5.7e+02 Score=26.17 Aligned_cols=120 Identities=8% Similarity=0.177 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHhhhhHHHHHhh
Q 012498 58 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK-----------NMEAEKQVKFFQGCMAAAFAE 126 (462)
Q Consensus 58 a~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~K-----------n~e~EkqvkFfQs~vA~AFAE 126 (462)
..+...|+.|+..|.-..+-+ .+.|..=..+-++++.-+.. +.+||++..+.|-.|-.-|.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~-------~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~- 134 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNS-------KDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ- 134 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 455556666666555443333 23344444444444422222 34778888888877777766
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHH
Q 012498 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (462)
Q Consensus 127 RD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~ 191 (462)
+-.+++. .=+...-+++.+|.-++--..-|..-=..+.+++.|+..++.|..-+..||.
T Consensus 135 -~ir~Lq~-----~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a 193 (390)
T 1deq_A 135 -RINLLQK-----NVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIA 193 (390)
T ss_pred -HHHHHHH-----HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhh
Confidence 3333321 1111222333333333222222222223456677777777777766666655
No 87
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=24.85 E-value=4.5e+02 Score=24.90 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=38.6
Q ss_pred HHHHHHhHHHHHhhhhh----h-HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHH
Q 012498 241 LEKTRSSVENLQSKLRM----G-LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVH 300 (462)
Q Consensus 241 ~e~lr~~i~~LQskLR~----G-LeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~ 300 (462)
+.+-.....++|.|+|- | =.+--.|.+.+..+..++..++.|+.+|+.+. ....|.+
T Consensus 140 lkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~~~~r~A---L~EERrR 201 (253)
T 2d1l_A 140 IKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKA---LIEERGR 201 (253)
T ss_dssp HHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HhHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 33334556788888887 2 34445577777788888889999999887643 4444444
No 88
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.72 E-value=5.9e+02 Score=26.24 Aligned_cols=47 Identities=9% Similarity=0.198 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHH
Q 012498 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 192 (462)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~K 192 (462)
..+.+++.++.+++-.-...+++-.+||..+.....+......+|++
T Consensus 100 ~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~ 146 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSE 146 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 44555555555554444444555556666666665555544444443
No 89
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.49 E-value=74 Score=23.84 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh
Q 012498 233 YISALEDELEKTRSSVENLQSKLRM 257 (462)
Q Consensus 233 yisaLEeE~e~lr~~i~~LQskLR~ 257 (462)
-++|||.|+..|..+++-|.|+|..
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999888764
No 90
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=23.90 E-value=41 Score=24.65 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHhHHHHHh
Q 012498 229 STSKYISALEDELEKTRSSVENLQS 253 (462)
Q Consensus 229 stskyisaLEeE~e~lr~~i~~LQs 253 (462)
....||+.||.+++.|...|..|.+
T Consensus 46 ~~~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 46 YKRARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999998876654
No 91
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.81 E-value=87 Score=30.02 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=4.6
Q ss_pred ccccchhhhhcccc-ccccccCC
Q 012498 206 TSWEDKCACLLLDS-AEMWSFND 227 (462)
Q Consensus 206 ~s~~~Kcs~LL~Ds-~~~Wsfn~ 227 (462)
-.|+..|++.|+=+ ...|..-+
T Consensus 255 ~d~~re~~f~l~~~~~~~Y~v~~ 277 (315)
T 2ve7_A 255 KNPESPFMFSLHLNEARDYEVSD 277 (315)
T ss_dssp -CCCCCC----------------
T ss_pred CCCCceEEEEEEecCCCceEEEe
Confidence 45778888888876 55555554
No 92
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.06 E-value=1.2e+03 Score=29.45 Aligned_cols=99 Identities=8% Similarity=0.160 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcc
Q 012498 138 KEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLL 217 (462)
Q Consensus 138 KE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~ 217 (462)
+++=.+.-+++++++.++.+|+....+..+-...|+.+.+.-+...+...+.|+..=.=+.|=.+. --++...-..|..
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~-~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ-SENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH-HHHHHHHHHhccH
Confidence 333344456677777777777777766666667777777777777777777776443322221111 1123333444555
Q ss_pred ccc---cccccCCcchHHHHHHH
Q 012498 218 DSA---EMWSFNDTSTSKYISAL 237 (462)
Q Consensus 218 Ds~---~~Wsfn~tstskyisaL 237 (462)
|.- --=||.|+-|+.|=..|
T Consensus 2106 D~LLaaafisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A 2106 DVVLASAFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp HHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH
Confidence 532 23466777777775555
No 93
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.69 E-value=2.2e+02 Score=23.89 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHhhhHhHhhhHHHHHHhhH
Q 012498 156 EELSSENIELKKQNATLRFDLEKQEELNE 184 (462)
Q Consensus 156 ~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e 184 (462)
+|+.......++.++.||-....+..+-.
T Consensus 9 eElr~Fa~~L~~F~d~Lq~~~~~L~~~f~ 37 (94)
T 3fx7_A 9 EEVREFVGHLERFKELLREEVNSLSNHFH 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666777778888888877777655444
No 94
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=22.63 E-value=4.6e+02 Score=24.83 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=15.7
Q ss_pred HHHHHHhHHhHHHHHHhhhh
Q 012498 259 LEIENHLKKSVRELEKKIIH 278 (462)
Q Consensus 259 LeIenhLkk~vr~Lekkqi~ 278 (462)
--|.+-|++-+|..+|-..|
T Consensus 127 ~~vl~aLk~yirae~KDR~H 146 (219)
T 3pmr_A 127 ERVLLALRRYLRAEQKEQRH 146 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46777789999999987644
No 95
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=22.52 E-value=1.8e+02 Score=29.17 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccc
Q 012498 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMW 223 (462)
Q Consensus 144 m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~W 223 (462)
|..++..+..|..+++..+.+-.=.+| +.....+....-.+..+++.|-+++...-+..++ .-|+.|+
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d--~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~------~el~~D~---- 68 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKD--KGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQA------ESLLDDP---- 68 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HTSTTCH----
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCH----
Confidence 345677777888888776643211111 1111122222223446677776666543332111 0011122
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 012498 224 SFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG 258 (462)
Q Consensus 224 sfn~tstskyisaLEeE~e~lr~~i~~LQskLR~G 258 (462)
...+-.++|+..+...++.|..+|+.-
T Consensus 69 --------e~~~~a~~e~~~l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 69 --------ELKEMAKAEREALLARKEALEKELERH 95 (354)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 245667888999999999988877753
No 96
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.46 E-value=2.5e+02 Score=28.22 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012498 14 ALMARIQQLEHERDELRKDIEQL 36 (462)
Q Consensus 14 ~l~~RI~qLe~ERdEL~KDIEqL 36 (462)
.+..++.+|+++|+.+.|.|-++
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777888888888888764
No 97
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=22.31 E-value=81 Score=25.13 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=16.1
Q ss_pred hcccccchhhhhccccccccccCCcc
Q 012498 204 LETSWEDKCACLLLDSAEMWSFNDTS 229 (462)
Q Consensus 204 ~~~s~~~Kcs~LL~Ds~~~Wsfn~ts 229 (462)
..+.+++=--.+-+-+.++|+|||..
T Consensus 88 lgi~~~~v~I~~~e~~~~~wg~~G~~ 113 (119)
T 2os5_A 88 LKLPKDKVIITYFDLQPIHVGFNGTT 113 (119)
T ss_dssp HCCCGGGEEEEEEECCGGGCEETTEE
T ss_pred hCcCcccEEEEEEECCHHHeeECCEE
Confidence 44555443333445567899999973
No 98
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.21 E-value=3.1e+02 Score=22.08 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhH
Q 012498 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (462)
Q Consensus 133 EaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e 184 (462)
|++.|.++-+..-+++...+.|.......+...++-+..|+.++....++..
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555777777777777777777666666677777766666555
No 99
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=22.18 E-value=4.4e+02 Score=23.81 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012498 11 ESEALMARIQQLEHERDELRKDIEQLC 37 (462)
Q Consensus 11 ~~e~l~~RI~qLe~ERdEL~KDIEqLC 37 (462)
.-+.+.+|...+|..-..|.||+...+
T Consensus 34 ~Fe~~e~rF~~le~~~~kL~k~~k~y~ 60 (237)
T 4avm_A 34 RFEQSASNFYQQQAEGHKLYKDLKNFL 60 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999998543
No 100
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.16 E-value=85 Score=22.39 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=15.5
Q ss_pred HHHHhHHHHHHHhhhHhHhhhH
Q 012498 155 LEELSSENIELKKQNATLRFDL 176 (462)
Q Consensus 155 ~~E~~s~~~~qk~~n~aLQ~dl 176 (462)
....+++++++|++|..|....
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHH
Confidence 3456778888888887776554
No 101
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.06 E-value=2e+02 Score=23.58 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHHHHhhHhHHHH
Q 012498 148 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 189 (462)
Q Consensus 148 ~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kV 189 (462)
-.+++.|+.+|++. |..|...+..++.++..+..+
T Consensus 38 ~~e~~~r~~~Le~E-------N~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 38 NLETQHKVLELTAE-------NERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666554 455555555555555544433
No 102
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.73 E-value=73 Score=23.76 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 012498 234 ISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 234 isaLEeE~e~lr~~i~~LQskL 255 (462)
++.|+.||..|+..++.|+..+
T Consensus 31 v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666667777666543
No 103
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.67 E-value=2e+02 Score=23.10 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHhHhhhHHHH
Q 012498 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (462)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~ 179 (462)
++..+++.|+.+|+..+..++..-..|..++..+
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777665555544444444444443
No 104
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.54 E-value=93 Score=25.76 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012498 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGP 43 (462)
Q Consensus 12 ~e~l~~RI~qLe~ERdEL~KDIEqLCMQQaGp 43 (462)
.++|.+||..|+.+++.|.+.|.++=-+=+.|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 47899999999999999999999986554444
No 105
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.38 E-value=3.1e+02 Score=22.94 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=19.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH
Q 012498 51 RMHFQRTAGLEQEIEILKQKIA 72 (462)
Q Consensus 51 RM~~qRta~LEQeiE~Lkkkl~ 72 (462)
|.+.+|.-+.|+|++.|+.++.
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~~ 28 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKVL 28 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 6788999999999999998653
No 106
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.11 E-value=4.7e+02 Score=23.76 Aligned_cols=18 Identities=6% Similarity=0.004 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 012498 81 LQEELSEAYRIKGQLADL 98 (462)
Q Consensus 81 LQEELsEAYRiK~qLadL 98 (462)
||+=-++..+|+..+..|
T Consensus 13 LQ~lD~~i~~l~~~~~~l 30 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREK 30 (256)
T ss_dssp HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555556666666666665
No 107
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=20.40 E-value=93 Score=22.44 Aligned_cols=28 Identities=7% Similarity=0.193 Sum_probs=17.2
Q ss_pred hcccccchhhhhccc-cccccccCCcchHH
Q 012498 204 LETSWEDKCACLLLD-SAEMWSFNDTSTSK 232 (462)
Q Consensus 204 ~~~s~~~Kcs~LL~D-s~~~Wsfn~tstsk 232 (462)
.++..++ ..+++.+ +.++|+|+|.+.+.
T Consensus 34 lg~p~~~-v~V~i~e~~~~~w~~gG~~~~e 62 (67)
T 3m21_A 34 LNKNKAS-IVVIIDEVDSNNYGLGGESVHH 62 (67)
T ss_dssp HCCCGGG-CEEEEEECCTTTEEETTEEHHH
T ss_pred HCcCccc-EEEEEEEeCHHHeEECCEEHHH
Confidence 3344433 4455544 57899999986554
No 108
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.28 E-value=84 Score=22.08 Aligned_cols=20 Identities=50% Similarity=0.511 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHhhh
Q 012498 57 TAGLEQEIEILKQKIAACAR 76 (462)
Q Consensus 57 ta~LEQeiE~Lkkkl~~c~r 76 (462)
.|+|.|||-.|||.+++.--
T Consensus 4 iaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788888888887766543
No 109
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.06 E-value=3.2e+02 Score=21.44 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHH
Q 012498 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73 (462)
Q Consensus 16 ~~RI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~ 73 (462)
.+.+.+|+..-..|...|..|=-+=|-|+|.+- -+.+++.|-.+++.++..|..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~----d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQ----PHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC----CHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666678886321 123444444444444444433
Done!