Query 012498
Match_columns 462
No_of_seqs 15 out of 17
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 10:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012498.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012498hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 69.7 3.8 0.00028 29.0 5.2 51 191-255 6-56 (61)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 62.9 7.1 0.00052 28.8 5.7 55 189-255 21-75 (88)
3 d1am9a_ a.38.1.1 (A:) SREBP-1a 58.7 7.4 0.00054 28.5 5.1 51 191-255 23-73 (80)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 56.2 9.4 0.00068 29.1 5.5 77 12-88 17-105 (107)
5 d1nlwa_ a.38.1.1 (A:) Mad prot 52.3 10 0.00075 27.4 4.9 52 191-254 18-69 (79)
6 d1nkpb_ a.38.1.1 (B:) Max prot 43.2 23 0.0017 25.6 5.7 52 189-253 17-68 (83)
7 d1wu9a1 a.245.1.1 (A:191-249) 27.8 59 0.0043 23.4 5.6 31 11-42 9-43 (59)
8 d1seta1 a.2.7.1 (A:1-110) Sery 24.0 55 0.004 24.4 5.1 19 15-33 40-58 (110)
9 d1vcsa1 a.47.2.1 (A:8-96) Vesi 23.8 1.3E+02 0.0098 22.3 8.2 42 125-166 27-80 (89)
10 d1qvra2 c.37.1.20 (A:149-535) 22.8 2.2E+02 0.016 25.6 10.0 45 54-98 281-325 (387)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.71 E-value=3.8 Score=29.00 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=36.4
Q ss_pred HHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 012498 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQskL 255 (462)
++|-.+|.-.|.| .+-.+|+++|- .+-.||..|+.++..|......|.+..
T Consensus 6 ~~f~~L~~lvP~~--~~K~~Ka~iL~------------~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 6 DKIIELKDLVMGT--DAKMHKSGVLR------------KAIDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHSCS--SCCCCTTTHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCC--CCcccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888776655 22335666652 256799999999999998888876643
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.90 E-value=7.1 Score=28.83 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 012498 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 189 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQskL 255 (462)
+=+.|.++|.-.|.+.+.+--.|.+||- .+.+||..|++++..+...++.|+...
T Consensus 21 in~~f~~Lr~llP~~~~~~k~sK~~iL~------------~A~~yI~~L~~~~~~l~~~~~~l~~~~ 75 (88)
T d1nkpa_ 21 LKRSFFALRDQIPELENNEKAPKVVILK------------KATAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHTTCGGGTTCTTCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCccCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888777664333334666552 367899999999998888777776544
No 3
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.70 E-value=7.4 Score=28.48 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=34.8
Q ss_pred HHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 012498 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (462)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQskL 255 (462)
+.|.++|.-.|.+ .+-.+|++||- .+-.||..|+++++.|......|+..+
T Consensus 23 ~~~~~L~~llP~~--~~k~~K~~iL~------------~a~~yI~~L~~~~~~L~~e~~~lk~~~ 73 (80)
T d1am9a_ 23 DKIIELKDLVVGT--EAKLNKSAVLR------------KAIDYIRFLQHSNQKLKQENLSLRTAV 73 (80)
T ss_dssp HHHHHHHHHHTCS--SCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC--CCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777655543 12235666552 366799999999999998888776544
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=56.19 E-value=9.4 Score=29.09 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchHH----HhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 012498 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYLA----VATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (462)
Q Consensus 12 ~e~l~~RI~qLe~ERdEL~KDIEqL--------CMQQaGpgyl~----vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~ 79 (462)
...+.+++++|+.+..|...=++.| |.-..||-+|. -+--.+..|...|+.+|++|.+++..+-.+=.
T Consensus 17 l~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~ 96 (107)
T d1fxka_ 17 AQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888777766544443 66677877653 34556778889999999999998888777766
Q ss_pred chHHHHHHH
Q 012498 80 NLQEELSEA 88 (462)
Q Consensus 80 nLQEELsEA 88 (462)
.++..+.++
T Consensus 97 ~~~~~l~~~ 105 (107)
T d1fxka_ 97 EMQVNIQEA 105 (107)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 666666554
No 5
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.29 E-value=10 Score=27.37 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=35.7
Q ss_pred HHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhh
Q 012498 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 254 (462)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQsk 254 (462)
..|.++|.-.|.+.+..-..|.++|- .+-.||..|+.++..+...++.|+..
T Consensus 18 ~~f~~L~~llP~~~~~~k~sK~~iL~------------~A~~yI~~L~~~~~~l~~~~~~L~~~ 69 (79)
T d1nlwa_ 18 LSLEKLKGLVPLGPDSSRHTTLSLLT------------KAKLHIKKLEDSDRKAVHQIDQLQRE 69 (79)
T ss_dssp HHHHHHHHSSCCCSSSCCCTTHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCCCCCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777887776554333345665552 35679999999988888877777654
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.22 E-value=23 Score=25.59 Aligned_cols=52 Identities=12% Similarity=0.294 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhhhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 012498 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (462)
Q Consensus 189 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tstskyisaLEeE~e~lr~~i~~LQs 253 (462)
+=+.|.++|.-.|.+.+.. -+|.+||- .+..||..|++++..+...+..|+.
T Consensus 17 in~~f~~L~~llP~~~~~k-~sK~~iL~------------~A~~yI~~L~~~~~~l~~~~~~l~~ 68 (83)
T d1nkpb_ 17 IKDSFHSLRDSVPSLQGEK-ASRAQILD------------KATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHTTSGGGTTSC-CCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCC-CCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888777553322 24555552 3678999988888777766665544
No 7
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.85 E-value=59 Score=23.40 Aligned_cols=31 Identities=35% Similarity=0.733 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcC
Q 012498 11 ESEALMARIQQLEHERD----ELRKDIEQLCMQQAG 42 (462)
Q Consensus 11 ~~e~l~~RI~qLe~ERd----EL~KDIEqLCMQQaG 42 (462)
....|..-|..||+||| -| .|||-||-..-|
T Consensus 9 ei~elk~~v~~lEkERdFYF~KL-RdIEilcQ~~e~ 43 (59)
T d1wu9a1 9 QVNVLKLTVEDLEKERDFYFGKL-RNIELICQENEG 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCccc
Confidence 35567777888999998 34 499999975433
No 8
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=24.04 E-value=55 Score=24.43 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012498 15 LMARIQQLEHERDELRKDI 33 (462)
Q Consensus 15 l~~RI~qLe~ERdEL~KDI 33 (462)
+..++.+|.++|+.+-|.|
T Consensus 40 l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 40 LKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554
No 9
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.82 E-value=1.3e+02 Score=22.25 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=33.8
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHH------------HHHHHHHHHHhHHHHHHH
Q 012498 125 AERDNSVMEAEKAKEKEELMSQKF------------NEFQTRLEELSSENIELK 166 (462)
Q Consensus 125 AERD~slmEaEkaKE~Ee~m~qk~------------~~~~~R~~E~~s~~~~qk 166 (462)
.+|...|-++++.-+-...++.+. ..+..|++.|.+++...|
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk 80 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE 80 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999888887777766 468889999988886655
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=22.82 E-value=2.2e+02 Score=25.58 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=36.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 012498 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (462)
Q Consensus 54 ~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadL 98 (462)
..|-..++.++..++.++......-.....-+.+...+|..|.++
T Consensus 281 ~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~l 325 (387)
T d1qvra2 281 QERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEV 325 (387)
T ss_dssp HSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999988888777777777777778888888766
Done!