Query 012499
Match_columns 462
No_of_seqs 114 out of 136
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12031 DUF3518: Domain of un 100.0 7.5E-31 1.6E-35 253.5 10.6 178 210-389 4-228 (257)
2 KOG2312 Predicted transcriptio 99.9 5.3E-23 1.1E-27 219.2 -0.6 166 205-389 7-173 (847)
3 PF05804 KAP: Kinesin-associat 98.1 1.8E-05 3.9E-10 88.7 12.2 149 291-448 290-443 (708)
4 PF05804 KAP: Kinesin-associat 97.7 0.00028 6.1E-09 79.3 12.0 181 216-416 269-449 (708)
5 PF04826 Arm_2: Armadillo-like 97.6 0.00048 1E-08 68.7 11.4 175 253-444 25-200 (254)
6 PLN03200 cellulose synthase-in 97.5 0.0027 5.9E-08 78.1 17.8 215 216-452 508-729 (2102)
7 cd00020 ARM Armadillo/beta-cat 97.5 0.00044 9.6E-09 58.0 7.4 110 293-407 9-119 (120)
8 PLN03200 cellulose synthase-in 97.4 0.0021 4.7E-08 79.0 14.4 214 216-449 550-767 (2102)
9 KOG4224 Armadillo repeat prote 96.9 0.0043 9.4E-08 64.7 9.5 229 210-460 226-459 (550)
10 PF10508 Proteasom_PSMB: Prote 96.7 0.057 1.2E-06 58.8 16.5 158 217-389 98-255 (503)
11 KOG0166 Karyopherin (importin) 96.5 0.059 1.3E-06 58.7 15.0 156 215-389 129-291 (514)
12 KOG0166 Karyopherin (importin) 96.4 0.044 9.5E-07 59.7 13.0 159 293-453 68-273 (514)
13 PF04826 Arm_2: Armadillo-like 96.3 0.075 1.6E-06 53.1 13.4 152 293-450 14-167 (254)
14 KOG1048 Neural adherens juncti 96.1 0.04 8.8E-07 61.9 11.2 167 234-411 514-687 (717)
15 PF10508 Proteasom_PSMB: Prote 96.1 0.13 2.7E-06 56.1 14.8 166 237-418 76-241 (503)
16 cd00020 ARM Armadillo/beta-cat 96.0 0.11 2.4E-06 43.2 11.0 108 335-445 8-119 (120)
17 KOG4224 Armadillo repeat prote 94.5 0.7 1.5E-05 48.8 13.1 218 217-451 147-410 (550)
18 KOG1222 Kinesin associated pro 94.3 0.3 6.6E-06 52.9 10.4 148 255-420 277-425 (791)
19 PF12755 Vac14_Fab1_bd: Vacuol 93.8 0.27 5.8E-06 42.2 7.3 92 310-408 5-96 (97)
20 PF01602 Adaptin_N: Adaptin N 91.8 1.3 2.8E-05 47.4 10.7 187 239-447 115-334 (526)
21 COG5064 SRP1 Karyopherin (impo 91.0 5.4 0.00012 42.0 13.7 115 337-455 160-281 (526)
22 PF03224 V-ATPase_H_N: V-ATPas 90.9 1.9 4.1E-05 43.9 10.5 155 292-449 106-272 (312)
23 KOG2171 Karyopherin (importin) 90.5 2.9 6.2E-05 49.4 12.4 129 216-364 104-236 (1075)
24 PF13646 HEAT_2: HEAT repeats; 89.8 3.4 7.3E-05 33.0 9.2 81 295-401 3-84 (88)
25 PF01602 Adaptin_N: Adaptin N 89.4 2.8 6.2E-05 44.7 10.8 166 253-447 54-222 (526)
26 PF12717 Cnd1: non-SMC mitotic 89.1 19 0.00042 33.5 15.4 166 255-445 2-175 (178)
27 KOG2122 Beta-catenin-binding p 88.8 2.8 6E-05 51.0 10.6 195 210-414 314-520 (2195)
28 KOG1048 Neural adherens juncti 88.1 1.3 2.8E-05 50.3 7.2 118 335-455 234-358 (717)
29 COG5064 SRP1 Karyopherin (impo 87.9 3.4 7.5E-05 43.5 9.6 161 216-389 135-297 (526)
30 KOG0946 ER-Golgi vesicle-tethe 87.3 6.7 0.00014 45.1 12.0 123 301-426 73-213 (970)
31 KOG1062 Vesicle coat complex A 86.8 11 0.00025 43.3 13.6 114 255-389 308-434 (866)
32 PF00514 Arm: Armadillo/beta-c 86.5 1.4 3E-05 31.1 4.3 34 373-408 8-41 (41)
33 KOG1062 Vesicle coat complex A 84.1 21 0.00045 41.3 14.0 118 255-389 266-397 (866)
34 PRK09687 putative lyase; Provi 83.9 51 0.0011 33.3 15.9 94 293-406 92-186 (280)
35 KOG4500 Rho/Rac GTPase guanine 83.6 12 0.00027 40.5 11.4 201 220-434 205-419 (604)
36 PRK09687 putative lyase; Provi 82.8 22 0.00049 35.9 12.7 30 239-270 91-120 (280)
37 PF13646 HEAT_2: HEAT repeats; 82.4 8.4 0.00018 30.6 7.8 84 242-358 3-87 (88)
38 KOG2122 Beta-catenin-binding p 82.2 10 0.00022 46.5 11.0 215 217-446 215-467 (2195)
39 PF12348 CLASP_N: CLASP N term 81.5 18 0.00038 34.4 10.9 111 256-379 109-223 (228)
40 PF03224 V-ATPase_H_N: V-ATPas 80.5 22 0.00047 36.2 11.7 177 253-439 117-307 (312)
41 PRK13800 putative oxidoreducta 80.3 20 0.00043 42.1 12.8 86 296-406 780-865 (897)
42 PF05536 Neurochondrin: Neuroc 80.3 21 0.00046 39.6 12.3 153 293-451 7-173 (543)
43 PRK13800 putative oxidoreducta 80.2 74 0.0016 37.4 17.3 155 253-446 633-804 (897)
44 PF08324 PUL: PUL domain; Int 77.9 14 0.00031 36.3 9.3 186 247-440 71-268 (268)
45 KOG1060 Vesicle coat complex A 77.7 21 0.00045 41.3 11.2 88 256-364 372-459 (968)
46 PF14664 RICTOR_N: Rapamycin-i 77.7 15 0.00033 38.8 9.8 116 307-431 84-200 (371)
47 PF12348 CLASP_N: CLASP N term 76.9 41 0.00088 32.0 11.8 121 256-394 68-192 (228)
48 PF10274 ParcG: Parkin co-regu 75.6 18 0.00039 34.8 8.8 82 291-373 38-119 (183)
49 KOG2023 Nuclear transport rece 75.6 19 0.00041 41.0 10.1 139 291-429 128-306 (885)
50 KOG2171 Karyopherin (importin) 70.7 25 0.00053 42.0 10.0 113 291-409 348-462 (1075)
51 PF14225 MOR2-PAG1_C: Cell mor 68.7 15 0.00033 37.0 6.9 118 292-411 8-147 (262)
52 PF12331 DUF3636: Protein of u 67.2 67 0.0014 30.0 10.2 93 294-388 33-147 (149)
53 KOG1058 Vesicle coat complex C 67.1 1.2E+02 0.0026 35.4 13.9 137 302-454 271-414 (948)
54 KOG0946 ER-Golgi vesicle-tethe 66.6 33 0.00073 39.7 9.6 171 253-425 75-261 (970)
55 smart00185 ARM Armadillo/beta- 66.1 11 0.00025 25.5 4.0 35 372-408 7-41 (41)
56 KOG2973 Uncharacterized conser 66.0 30 0.00064 36.2 8.4 104 336-448 5-113 (353)
57 KOG1077 Vesicle coat complex A 64.1 22 0.00048 40.7 7.6 64 336-407 370-436 (938)
58 KOG4500 Rho/Rac GTPase guanine 62.6 76 0.0016 34.8 10.9 160 292-452 88-259 (604)
59 PF00514 Arm: Armadillo/beta-c 61.8 14 0.00031 25.8 3.9 29 335-363 13-41 (41)
60 KOG4199 Uncharacterized conser 60.2 71 0.0015 34.0 9.9 138 294-435 286-432 (461)
61 KOG4413 26S proteasome regulat 59.6 1.4E+02 0.003 31.8 11.9 160 290-451 127-338 (524)
62 KOG1789 Endocytosis protein RM 58.9 45 0.00098 40.2 9.0 164 256-432 1740-1911(2235)
63 PF02985 HEAT: HEAT repeat; I 58.8 16 0.00034 24.3 3.5 29 335-363 1-29 (31)
64 COG5096 Vesicle coat complex, 57.5 1.6E+02 0.0035 34.3 13.1 153 253-434 67-220 (757)
65 KOG2973 Uncharacterized conser 57.3 72 0.0016 33.4 9.3 147 256-417 18-170 (353)
66 smart00185 ARM Armadillo/beta- 57.2 16 0.00034 24.8 3.3 29 335-363 13-41 (41)
67 KOG4413 26S proteasome regulat 56.0 85 0.0018 33.3 9.7 187 216-414 192-386 (524)
68 PF05536 Neurochondrin: Neuroc 55.9 1.8E+02 0.0039 32.4 13.0 96 303-408 69-168 (543)
69 KOG2023 Nuclear transport rece 55.4 63 0.0014 37.0 9.2 140 299-444 571-749 (885)
70 PF12755 Vac14_Fab1_bd: Vacuol 54.2 31 0.00067 29.5 5.3 67 291-360 27-93 (97)
71 PF05268 GP38: Phage tail fibr 53.6 14 0.00029 36.7 3.3 24 23-46 177-200 (260)
72 PF13513 HEAT_EZ: HEAT-like re 51.0 67 0.0015 23.6 6.2 54 256-318 2-55 (55)
73 KOG0168 Putative ubiquitin fus 50.0 46 0.001 39.0 7.2 83 347-430 181-270 (1051)
74 cd00256 VATPase_H VATPase_H, r 49.3 3.8E+02 0.0083 29.1 16.1 115 294-411 104-219 (429)
75 KOG4646 Uncharacterized conser 47.8 59 0.0013 30.5 6.3 120 255-386 31-150 (173)
76 KOG0301 Phospholipase A2-activ 47.8 2.4E+02 0.0051 32.5 12.1 174 216-412 529-708 (745)
77 PTZ00429 beta-adaptin; Provisi 46.9 5.3E+02 0.011 30.1 16.1 92 255-365 119-210 (746)
78 PF12830 Nipped-B_C: Sister ch 46.4 66 0.0014 30.4 6.8 64 335-406 9-72 (187)
79 PF12717 Cnd1: non-SMC mitotic 45.8 1.4E+02 0.0031 27.7 8.9 89 307-409 4-93 (178)
80 KOG2160 Armadillo/beta-catenin 44.6 3.6E+02 0.0077 28.6 12.2 148 228-390 115-266 (342)
81 PF13513 HEAT_EZ: HEAT-like re 44.0 31 0.00068 25.4 3.4 50 309-360 5-54 (55)
82 KOG4653 Uncharacterized conser 41.2 2.9E+02 0.0064 32.7 11.8 187 218-423 707-931 (982)
83 PF12719 Cnd3: Nuclear condens 40.7 3.6E+02 0.0078 27.1 11.5 65 294-364 30-94 (298)
84 PF06012 DUF908: Domain of Unk 39.2 57 0.0012 33.7 5.6 56 304-364 1-56 (329)
85 PF10165 Ric8: Guanine nucleot 39.1 4.7E+02 0.01 28.3 12.7 43 335-390 309-351 (446)
86 PTZ00429 beta-adaptin; Provisi 38.6 7E+02 0.015 29.1 17.0 130 253-409 80-209 (746)
87 PF07539 DRIM: Down-regulated 38.1 40 0.00087 30.9 3.7 47 334-389 17-63 (141)
88 KOG4199 Uncharacterized conser 35.1 2.6E+02 0.0056 29.9 9.4 110 336-447 243-360 (461)
89 PF12460 MMS19_C: RNAPII trans 34.4 1.4E+02 0.003 31.7 7.6 93 290-385 318-414 (415)
90 PRK10590 ATP-dependent RNA hel 33.1 58 0.0013 34.9 4.6 11 20-30 402-412 (456)
91 KOG1058 Vesicle coat complex C 32.4 6.5E+02 0.014 29.7 12.5 91 349-446 221-328 (948)
92 PF12460 MMS19_C: RNAPII trans 32.3 71 0.0015 33.9 5.1 101 228-341 310-413 (415)
93 KOG1077 Vesicle coat complex A 31.5 8.1E+02 0.018 28.8 13.0 128 237-386 106-237 (938)
94 KOG1248 Uncharacterized conser 31.1 4E+02 0.0087 32.5 11.1 153 215-385 720-877 (1176)
95 COG5218 YCG1 Chromosome conden 30.8 3.5E+02 0.0075 31.1 9.9 115 290-417 90-205 (885)
96 KOG1240 Protein kinase contain 29.7 2.1E+02 0.0045 35.2 8.4 96 254-363 630-725 (1431)
97 PF04063 DUF383: Domain of unk 29.3 1.7E+02 0.0036 28.2 6.6 78 343-420 4-99 (192)
98 KOG1059 Vesicle coat complex A 28.8 1E+03 0.022 28.0 17.3 148 253-425 311-460 (877)
99 PF11865 DUF3385: Domain of un 27.7 3.3E+02 0.0072 25.1 8.1 124 234-362 6-156 (160)
100 PF10165 Ric8: Guanine nucleot 27.6 4.8E+02 0.01 28.2 10.5 112 301-414 42-174 (446)
101 KOG1293 Proteins containing ar 27.5 3.9E+02 0.0083 30.7 9.7 75 294-369 464-539 (678)
102 PRK10590 ATP-dependent RNA hel 27.4 74 0.0016 34.1 4.2 25 14-40 402-426 (456)
103 PF14663 RasGEF_N_2: Rapamycin 27.1 1.3E+02 0.0028 26.4 5.0 51 375-427 6-56 (115)
104 PF13251 DUF4042: Domain of un 27.0 1.6E+02 0.0034 28.2 5.9 74 291-364 101-175 (182)
105 KOG1242 Protein containing ada 26.9 8.8E+02 0.019 27.5 12.3 190 244-450 222-448 (569)
106 PF04063 DUF383: Domain of unk 26.4 3.3E+02 0.0072 26.2 8.1 84 335-420 53-144 (192)
107 PF08167 RIX1: rRNA processing 26.0 1.5E+02 0.0033 27.4 5.6 84 290-375 66-155 (165)
108 COG5656 SXM1 Importin, protein 25.0 1.1E+03 0.023 28.0 12.6 170 257-441 476-662 (970)
109 PF10363 DUF2435: Protein of u 24.6 4.3E+02 0.0094 22.3 7.8 73 292-367 4-76 (92)
110 KOG0212 Uncharacterized conser 24.2 5.7E+02 0.012 29.1 10.1 149 225-391 74-222 (675)
111 KOG2032 Uncharacterized conser 24.2 1E+03 0.023 26.6 12.4 120 235-364 252-372 (533)
112 PF11698 V-ATPase_H_C: V-ATPas 23.1 1E+02 0.0022 27.7 3.6 68 291-361 43-113 (119)
113 TIGR02270 conserved hypothetic 22.4 6.7E+02 0.014 27.0 10.2 111 293-418 88-216 (410)
114 KOG2025 Chromosome condensatio 22.1 5.2E+02 0.011 30.2 9.5 110 291-417 85-199 (892)
115 PF14500 MMS19_N: Dos2-interac 21.9 2.1E+02 0.0046 28.7 6.0 65 258-324 158-223 (262)
116 KOG1222 Kinesin associated pro 21.8 1.2E+03 0.026 26.4 13.9 57 215-275 323-379 (791)
117 KOG1240 Protein kinase contain 21.5 3.6E+02 0.0079 33.2 8.5 97 256-363 438-537 (1431)
118 PF08389 Xpo1: Exportin 1-like 21.3 84 0.0018 27.2 2.8 64 290-358 81-148 (148)
119 smart00311 PWI PWI, domain in 21.3 1.3E+02 0.0028 24.2 3.6 28 333-360 11-38 (74)
120 PF04078 Rcd1: Cell differenti 21.1 6E+02 0.013 25.9 9.0 143 306-451 65-223 (262)
121 TIGR02270 conserved hypothetic 20.8 1.1E+03 0.023 25.5 12.7 56 294-361 150-205 (410)
122 PF11698 V-ATPase_H_C: V-ATPas 20.0 3.7E+02 0.008 24.1 6.5 70 334-406 43-113 (119)
No 1
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=99.97 E-value=7.5e-31 Score=253.46 Aligned_cols=178 Identities=25% Similarity=0.274 Sum_probs=157.2
Q ss_pred HHhhhhhhhhhhcCCCCCccHHHHhhCcchHHHH---HhhhcccCCC-----------h-----------------HHHH
Q 012499 210 QQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETV---FQCIEDHVTE-----------D-----------------EELV 258 (462)
Q Consensus 210 qr~a~~~s~ILRNLSf~p~N~~~LA~~~~~l~~L---Llc~~~~~~~-----------d-----------------~eLr 258 (462)
-+|++|++||||||||+|+|+.+||||++++.+| ++++|.|+.. + .+||
T Consensus 4 a~RclclSNIlR~LSFvpGnd~emskh~~lL~ilGrlLlL~h~h~~r~~~~~~~~~~e~~~~~~~~~~~~wwwd~l~~lR 83 (257)
T PF12031_consen 4 ARRCLCLSNILRGLSFVPGNDTEMSKHPGLLLILGRLLLLHHEHPERKQKPRTYDREEEEDESLSCSEAEWWWDCLEQLR 83 (257)
T ss_pred HHHHHHHHHHHhccCcCCCcHHHHhhChhHHHHHHHHHhcccCCcccccCCCCcchhhhhccccccchHHHHHHHHHHHh
Confidence 3567899999999999999999999999999986 6677877741 0 2699
Q ss_pred HHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCC----------CHHHHHHHHHHHHHhhcCCCCcccc
Q 012499 259 TNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSP----------FKAWHCAAAELLGRLIINPDNEPFL 328 (462)
Q Consensus 259 ~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~----------Dr~~ii~aLE~L~kL~~~~~Ne~~l 328 (462)
+++|++++||++++||++|++++. .||.+++++|+++..-... -.++++.|||+|+|||+.++|+|+|
T Consensus 84 EnalV~laNisgqLdLs~~~e~I~--~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVDli 161 (257)
T PF12031_consen 84 ENALVTLANISGQLDLSDYPESIA--RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVDLI 161 (257)
T ss_pred hcceEeeeeeeeeeecccCchHHH--HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCccee
Confidence 999999999999999999987763 2689999999999765433 3678999999999999999999999
Q ss_pred CCCchH-----HHHHHHHhcCCc-HHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCC
Q 012499 329 LPFVPQ-----IHKRLVDLMSLP-AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 389 (462)
Q Consensus 329 l~~~~~-----i~~rlv~lL~l~-D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~ 389 (462)
+.+.|. +|..++++|+.+ |+.++|+++.+|.+|++.++.+|+.+|.++++|.+||+||++.
T Consensus 162 LaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 162 LATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred eeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 988774 899999999984 5699999999999999999999999999999999999999876
No 2
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=99.85 E-value=5.3e-23 Score=219.18 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=152.6
Q ss_pred HHHHHHHhhhhhhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchh
Q 012499 205 GRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSY 284 (462)
Q Consensus 205 ~~~~~qr~a~~~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~ 284 (462)
.+|..|. ..|+|||||.++|-+.++++|++++||++|+.+.|+. +.-.+||+++|+|. . ..
T Consensus 7 ~qr~~q~-----~tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~---~~Vqal~s~~nlaq------p-t~---- 67 (847)
T KOG2312|consen 7 PQRQGQP-----PTVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQ---MQVQALQSNANLAQ------P-TS---- 67 (847)
T ss_pred ccccCCc-----ceeeeeeccchhhhcccCCCCChhheeeeecccccch---hhhHhhhhhcccCC------c-ch----
Confidence 4555666 8999999999999999999999999999999999985 99999999999998 1 11
Q ss_pred hhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012499 285 IKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 285 i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~-i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~ 363 (462)
..++-+.+|.++++++.|.||+.+++|+|+|.+||..+.|..+|++++.+ .|.++|..|++.|++|+.++||+||+|++
T Consensus 68 ~e~S~~~~L~t~t~Gi~S~drflimr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~Lyalse 147 (847)
T KOG2312|consen 68 GESSLIKQLLTPTRGISSPDRFLIMRALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSE 147 (847)
T ss_pred hhhhHHHHHhhhccCCCCCCceeEeeccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccc
Confidence 12444678999999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred cCHHHHHHHhcchhHHHHHHHhhcCC
Q 012499 364 VNVDCRLKLASERWAIDRLLRVIKTP 389 (462)
Q Consensus 364 ~~~~~~~~ia~~~~~V~~LV~ll~~~ 389 (462)
+|..+|..|+.++++||+||++.+.+
T Consensus 148 mGdvac~~Is~v~klidqLVsl~t~e 173 (847)
T KOG2312|consen 148 MGDVACVPISNVQKLIDQLVSLSTAE 173 (847)
T ss_pred cCCccchhhhhhhhhhhhhhccchhh
Confidence 99999999999999999999998653
No 3
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.12 E-value=1.8e-05 Score=88.69 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=111.6
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH
Q 012499 291 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL 370 (462)
Q Consensus 291 ~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~ 370 (462)
-++..|..+|.+++-..++.++.+|.|||....|.+.+...- ++.+++.++..++.+++..||-+|||||--... +
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g--iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~--R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG--IVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL--R 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC--CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH--H
Confidence 345666788889999999999999999999999998886432 888999999999999999999999999985444 3
Q ss_pred HHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHH---HHh--cchhhHHHHHHHHHHHh
Q 012499 371 KLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAE---ILF--SDGRYSDTFARILYELT 445 (462)
Q Consensus 371 ~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~---i~~--sD~~~~~~~~~iL~~l~ 445 (462)
.....-|.|..||.|++.++. .. -|-.+|.+|+..+++|+.|. |..-+.. +.+ +++++.....-.++-|+
T Consensus 366 ~~mV~~GlIPkLv~LL~d~~~-~~---val~iLy~LS~dd~~r~~f~-~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDPNF-RE---VALKILYNLSMDDEARSMFA-YTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHHCCCcHHHHHHhCCCch-HH---HHHHHHHHhccCHhhHHHHh-hcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 345566799999999987631 22 26688999999999999883 3333322 222 36666555556666555
Q ss_pred cCC
Q 012499 446 SRP 448 (462)
Q Consensus 446 ~~~ 448 (462)
..+
T Consensus 441 ~~~ 443 (708)
T PF05804_consen 441 LNK 443 (708)
T ss_pred cCH
Confidence 544
No 4
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.69 E-value=0.00028 Score=79.33 Aligned_cols=181 Identities=22% Similarity=0.296 Sum_probs=127.7
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
++.+|=||+-.+.++..|. ++.++..|+.|+..+ ..|+...++-.|.+++-+-+=.+ .+...-+...
T Consensus 269 ~~~lLlNLAed~~ve~kM~-~~~iV~~Lv~~Ldr~---n~ellil~v~fLkkLSi~~ENK~---------~m~~~giV~k 335 (708)
T PF05804_consen 269 AFYLLLNLAEDPRVELKMV-NKGIVSLLVKCLDRE---NEELLILAVTFLKKLSIFKENKD---------EMAESGIVEK 335 (708)
T ss_pred HHHHHHHHhcChHHHHHHH-hcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHH---------HHHHcCCHHH
Confidence 4678999999999999996 588899888887643 34799999999999886543221 1333335667
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcc
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASE 375 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~ 375 (462)
|.+.+.+++...+..++++|.+||-.+++...+...- ++..++.+|. |...+..|+.+||++|. +++++.+++..
T Consensus 336 L~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~G--lIPkLv~LL~--d~~~~~val~iLy~LS~-dd~~r~~f~~T 410 (708)
T PF05804_consen 336 LLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLG--LIPKLVELLK--DPNFREVALKILYNLSM-DDEARSMFAYT 410 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCC--CcHHHHHHhC--CCchHHHHHHHHHHhcc-CHhhHHHHhhc
Confidence 7888889998899999999999999999877665422 4557777776 44577889999999998 55666667666
Q ss_pred hhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhH
Q 012499 376 RWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLL 416 (462)
Q Consensus 376 ~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~l 416 (462)
.+|..|+.++..+. ++++-.-++..+.+||.++.|-.++
T Consensus 411 -dcIp~L~~~Ll~~~-~~~v~~eliaL~iNLa~~~rnaqlm 449 (708)
T PF05804_consen 411 -DCIPQLMQMLLENS-EEEVQLELIALLINLALNKRNAQLM 449 (708)
T ss_pred -chHHHHHHHHHhCC-CccccHHHHHHHHHHhcCHHHHHHH
Confidence 48999998875541 1222222333444444444444333
No 5
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.63 E-value=0.00048 Score=68.66 Aligned_cols=175 Identities=21% Similarity=0.190 Sum_probs=124.2
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
+|+.+++.++-+++|.|.+--=.+. |.+--....|...|.+++......|+.+|.+|+.+..|...|-.++
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~---------Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i 95 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDI---------IRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYI 95 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHH---------HHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 5667999999999998863311110 1111123566778889999999999999999999999999887777
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCc
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQN 412 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~n 412 (462)
+++.+.++.. --|..++.+.|-+|.+||-.+. ....++ ..|..|+++++.|. ...=-.+-..|.+||+.|.+
T Consensus 96 ~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~-~~~~l~---~~i~~ll~LL~~G~--~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 96 PQVCEETVSS--PLNSEVQLAGLRLLTNLTVTND-YHHMLA---NYIPDLLSLLSSGS--EKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcc-hhhhHH---hhHHHHHHHHHcCC--hHHHHHHHHHHHHhccCHHH
Confidence 7777766552 2367889999999999985543 334444 36889999999983 33345677799999999999
Q ss_pred hhhHHhhHHHHHHHHhcchh-hHHHHHHHHHHH
Q 012499 413 RVLLLAYENAFAEILFSDGR-YSDTFARILYEL 444 (462)
Q Consensus 413 r~~ll~~E~~l~~i~~sD~~-~~~~~~~iL~~l 444 (462)
...++.-+-.---+.+.|.. -.+.+-++|.-.
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~ 200 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFF 200 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHH
Confidence 88888776322224444443 455555655443
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.52 E-value=0.0027 Score=78.14 Aligned_cols=215 Identities=14% Similarity=0.157 Sum_probs=158.2
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
++-+|=|++-.++|.+.+....+++..|+.++.+. +.+.++.++.++.|+...-+-. ....
T Consensus 508 AawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg---d~~~q~~Aa~AL~nLi~~~d~~----------------~I~~ 568 (2102)
T PLN03200 508 SATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG---GPKGQEIAAKTLTKLVRTADAA----------------TISQ 568 (2102)
T ss_pred HHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccchh----------------HHHH
Confidence 46677788887877777665567777777776553 3478999999999997532111 1244
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCC--chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF--VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~--~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
++..|.++|...+..++++|+++...-...+..... ...-++.++++|...+....+.+..+|++|+..+.+.|..+.
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 566788898888888999999986644433322221 123678999999999999999999999999999988887765
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc--CCCchhhHHhh--HHHHHH-HHhcchhhHHHHHHHHHHHhcCC
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS--EPQNRVLLLAY--ENAFAE-ILFSDGRYSDTFARILYELTSRP 448 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~--~p~nr~~ll~~--E~~l~~-i~~sD~~~~~~~~~iL~~l~~~~ 448 (462)
.. +.|..||.+++.+ +.++-|.||..|.+|++ .++|+..++.. =..|.+ +...|.++.+.-+..|.-+.+.+
T Consensus 649 ~a-gaIpPLV~LLss~--~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~ 725 (2102)
T PLN03200 649 TD-EIINPCIKLLTNN--TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP 725 (2102)
T ss_pred Hc-CCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc
Confidence 54 5899999999987 57889999999999996 33556655432 112333 33458899999999999888888
Q ss_pred CCcc
Q 012499 449 NNKV 452 (462)
Q Consensus 449 ~~~~ 452 (462)
..+.
T Consensus 726 e~~~ 729 (2102)
T PLN03200 726 EVAA 729 (2102)
T ss_pred hHHH
Confidence 6653
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.46 E-value=0.00044 Score=58.00 Aligned_cols=110 Identities=23% Similarity=0.196 Sum_probs=87.2
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHhhcC-CCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012499 293 VEAIMGILGSPFKAWHCAAAELLGRLIIN-PDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 371 (462)
Q Consensus 293 l~~l~~~L~S~Dr~~ii~aLE~L~kL~~~-~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ 371 (462)
+..+...+.+.+......++.+|+++|.. +.+...+.. ..+++.++.+|..+|..++..++-+|++++..+... ..
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE--AGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 45667777777788889999999999998 454444432 137888888898899999999999999999976543 45
Q ss_pred HhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 012499 372 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV 407 (462)
Q Consensus 372 ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la 407 (462)
.....+.+..|+.++..+ +.++.+.|+.+|.+|+
T Consensus 86 ~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 556778999999999877 4677888888888876
No 8
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.37 E-value=0.0021 Score=79.01 Aligned_cols=214 Identities=16% Similarity=0.147 Sum_probs=145.1
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
++..|-|++...+|.+. ++++.+ .. +.+...+.++++.++||..-.+-.+..... +.+.--+..
T Consensus 550 Aa~AL~nLi~~~d~~~I----~~Lv~L----Ll---sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g-----~~~~ggL~~ 613 (2102)
T PLN03200 550 AAKTLTKLVRTADAATI----SQLTAL----LL---GDLPESKVHVLDVLGHVLSVASLEDLVREG-----SAANDALRT 613 (2102)
T ss_pred HHHHHHHHHhccchhHH----HHHHHH----hc---CCChhHHHHHHHHHHHHHhhcchhHHHHHh-----hhccccHHH
Confidence 46666666666666544 333221 11 133468999999999996644443211000 000123577
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhc
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS 374 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~-i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~ 374 (462)
|...+.+.+......|..+|.++|.. |.+........ .+..++.+|...+.+.+..+--+|.+|+..+......-.-
T Consensus 614 Lv~LL~sgs~~ikk~Aa~iLsnL~a~--~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v 691 (2102)
T PLN03200 614 LIQLLSSSKEETQEKAASVLADIFSS--RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYA 691 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 78888899999999999999999974 33433333322 5677888999888888888888888888755443222235
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHHh---cchhhHHHHHHHHHHHhcCCC
Q 012499 375 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILF---SDGRYSDTFARILYELTSRPN 449 (462)
Q Consensus 375 ~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~~---sD~~~~~~~~~iL~~l~~~~~ 449 (462)
..|+|.-|+.+++.+ +.+|...|+.+|.++++.|+++..+....---..+-+ -.+++...-+..|++|.++-.
T Consensus 692 ~~GaV~pL~~LL~~~--d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 692 AEDAIKPLIKLAKSS--SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HcCCHHHHHHHHhCC--ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 678999999999886 6789999999999999999999988865442222222 266677778888888876644
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.0043 Score=64.69 Aligned_cols=229 Identities=20% Similarity=0.221 Sum_probs=151.3
Q ss_pred HHhhhhhhhhhhcCCCCCccHHHHhhC-cchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhc
Q 012499 210 QQCAVGASNIIRNFSFMPDNEVIMAQH-RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKIT 288 (462)
Q Consensus 210 qr~a~~~s~ILRNLSf~p~N~~~LA~~-~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~ 288 (462)
-+|..+++ |......|-..||+. |.+++-|+.+..+. ++-.+-.+=-.|.|||.+-.-. .+|.
T Consensus 226 yycttais----nIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~---s~kvkcqA~lALrnlasdt~Yq---------~eiv 289 (550)
T KOG4224|consen 226 YYCTTAIS----NIAVDRRARKILAQAEPKLVPALVDLMDDG---SDKVKCQAGLALRNLASDTEYQ---------REIV 289 (550)
T ss_pred HHHHHHhh----hhhhhHHHHHHHHhcccchHHHHHHHHhCC---ChHHHHHHHHHHhhhcccchhh---------hHHH
Confidence 34544444 445667788889886 56778777777553 2235555656677777532221 0121
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHH-HHHHHHHHHHHHhhccCHH
Q 012499 289 EKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAF-DAQAAAVGALYNLAEVNVD 367 (462)
Q Consensus 289 ~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~-~L~~~aLe~LY~Ls~~~~~ 367 (462)
..--+-.+.+.|.|+--..+....-|+.++++.|-|+.+|.+.- +++-+|++|...|. +++..++..|.+|+...+.
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dag--fl~pLVrlL~~~dnEeiqchAvstLrnLAasse~ 367 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAG--FLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH 367 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceeccc--chhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence 11112234556678888889999999999999999999887543 67778999988776 4999999999999997666
Q ss_pred HHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHHhc---chhhHHHHHHHHHHH
Q 012499 368 CRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFS---DGRYSDTFARILYEL 444 (462)
Q Consensus 368 ~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~~s---D~~~~~~~~~iL~~l 444 (462)
.. +.-...++|..|..|+-++ +.++-.+....+..||-...-|..|+-+---=..|-++ .++|.+--|-.|.-+
T Consensus 368 n~-~~i~esgAi~kl~eL~lD~--pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl 444 (550)
T KOG4224|consen 368 NV-SVIRESGAIPKLIELLLDG--PVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL 444 (550)
T ss_pred hh-HHHhhcCchHHHHHHHhcC--ChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence 63 4556788999999999888 34444455556666776777777765443222222232 456666677777777
Q ss_pred hcCCCCcccccccccc
Q 012499 445 TSRPNNKVASARGIWG 460 (462)
Q Consensus 445 ~~~~~~~~~~~~~~~~ 460 (462)
+++.++- +..+--||
T Consensus 445 ss~v~~Y-arviEawd 459 (550)
T KOG4224|consen 445 SSDVEHY-ARVIEAWD 459 (550)
T ss_pred hhhhHHH-HHHHHHhc
Confidence 7776653 33333443
No 10
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.70 E-value=0.057 Score=58.78 Aligned_cols=158 Identities=14% Similarity=0.168 Sum_probs=112.2
Q ss_pred hhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHH
Q 012499 217 SNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAI 296 (462)
Q Consensus 217 s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l 296 (462)
...|+++.-.++....+.....++..++.|+.+ +|.++.+.|..++.+|+.+-.--. - +-+..+...+
T Consensus 98 l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~---~d~~Va~~A~~~L~~l~~~~~~~~-------~--l~~~~~~~~L 165 (503)
T PF10508_consen 98 LKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD---PDLSVAKAAIKALKKLASHPEGLE-------Q--LFDSNLLSKL 165 (503)
T ss_pred HHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC---CcHHHHHHHHHHHHHHhCCchhHH-------H--HhCcchHHHH
Confidence 455777777777788888999999998888865 566899999999999997422110 0 1011124555
Q ss_pred HhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcch
Q 012499 297 MGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASER 376 (462)
Q Consensus 297 ~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~ 376 (462)
...+..++....++++|++.+++......--.+.. ..+++.++..|.-+|+-++..++|+|++|++ ....+.-+ ...
T Consensus 166 ~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL-~~~ 242 (503)
T PF10508_consen 166 KSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYL-EQQ 242 (503)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHH-HhC
Confidence 55555545566789999999998765432222211 1288888888888999999999999999999 44443444 446
Q ss_pred hHHHHHHHhhcCC
Q 012499 377 WAIDRLLRVIKTP 389 (462)
Q Consensus 377 ~~V~~LV~ll~~~ 389 (462)
+.++.|+.++...
T Consensus 243 gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 243 GIFDKLSNLLQDS 255 (503)
T ss_pred CHHHHHHHHHhcc
Confidence 8999999999665
No 11
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.059 Score=58.72 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=109.0
Q ss_pred hhhhhhhcCCC-CCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHH
Q 012499 215 GASNIIRNFSF-MPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAV 293 (462)
Q Consensus 215 ~~s~ILRNLSf-~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll 293 (462)
+++-.|.|++- ..++.....++-.+ ..++.|..+ ....+++.+.=.|+|||++- ..+.-.+...-.+
T Consensus 129 eAAWaLTnIAsgtse~T~~vv~agav-p~fi~Ll~s---~~~~v~eQavWALgNIagds--------~~~Rd~vl~~g~l 196 (514)
T KOG0166|consen 129 EAAWALTNIASGTSEQTKVVVDAGAV-PIFIQLLSS---PSADVREQAVWALGNIAGDS--------PDCRDYVLSCGAL 196 (514)
T ss_pred HHHHHHHHHhcCchhhccccccCCch-HHHHHHhcC---CcHHHHHHHHHHHhccccCC--------hHHHHHHHhhcch
Confidence 35666666544 34445555555443 334445443 23469999999999999843 1111113334456
Q ss_pred HHHHhhhCCCCH-HHHHHHHHHHHHhhcCCCCccccCCCch-----HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH
Q 012499 294 EAIMGILGSPFK-AWHCAAAELLGRLIINPDNEPFLLPFVP-----QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD 367 (462)
Q Consensus 294 ~~l~~~L~S~Dr-~~ii~aLE~L~kL~~~~~Ne~~ll~~~~-----~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~ 367 (462)
..++.++..+++ ..++-+.=+|++||...+ |-+| .++.-+..+|...|.+++.-+.=+|.+||....+
T Consensus 197 ~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~------P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 197 DPLLRLLNKSDKLSMLRNATWTLSNLCRGKN------PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE 270 (514)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHcCCC------CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 777777777776 788899999999999876 2222 2788889999999999999999999999987666
Q ss_pred HHHHHhcchhHHHHHHHhhcCC
Q 012499 368 CRLKLASERWAIDRLLRVIKTP 389 (462)
Q Consensus 368 ~~~~ia~~~~~V~~LV~ll~~~ 389 (462)
. ....-.-+.+.+||.+|.+.
T Consensus 271 ~-iq~vi~~gvv~~LV~lL~~~ 291 (514)
T KOG0166|consen 271 K-IQMVIDAGVVPRLVDLLGHS 291 (514)
T ss_pred H-HHHHHHccchHHHHHHHcCC
Confidence 5 45556667889999998664
No 12
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.044 Score=59.70 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=124.0
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH-HHHHHHHhcCCc-HHHHHHHHHHHHHHhhccCHHHHH
Q 012499 293 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLP-AFDAQAAAVGALYNLAEVNVDCRL 370 (462)
Q Consensus 293 l~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~-i~~rlv~lL~l~-D~~L~~~aLe~LY~Ls~~~~~~~~ 370 (462)
+.....++.|+|...+..+...+.||-+++.| +-|...+-. ++.++|..|.-. +..++.-+-=+|-|++.....- .
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~-T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERN-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ-T 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCC-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh-c
Confidence 34556778899999999999999999999999 666555444 899999999854 4788888888899998876554 4
Q ss_pred HHhcchhHHHHHHHhhcCCCC---------------------------------------C-h-HHHHHHHHHHHHhhcC
Q 012499 371 KLASERWAIDRLLRVIKTPHP---------------------------------------V-P-EVCRKAAMILESLVSE 409 (462)
Q Consensus 371 ~ia~~~~~V~~LV~ll~~~h~---------------------------------------~-~-em~rrAA~~L~~la~~ 409 (462)
++.-..++|..++.|+..+|. + + -|.|-|+=+|.+|+++
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 566777899999999877531 1 1 2889999999999999
Q ss_pred CCchhhHHhhHHHHHHHHh----cchhhHHHHHHHHHHHhcCCCCccc
Q 012499 410 PQNRVLLLAYENAFAEILF----SDGRYSDTFARILYELTSRPNNKVA 453 (462)
Q Consensus 410 p~nr~~ll~~E~~l~~i~~----sD~~~~~~~~~iL~~l~~~~~~~~~ 453 (462)
..--|.|-..+..|--|+- +|+.|..-.+-.|-+|+-+++-|..
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 9877777666665555443 5999988888888888888887643
No 13
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.33 E-value=0.075 Score=53.15 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=122.0
Q ss_pred HHHHHhhhC-CCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012499 293 VEAIMGILG-SPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 371 (462)
Q Consensus 293 l~~l~~~L~-S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ 371 (462)
|+.+...|. ++|.+.+..++-++++.+..+.|.++|.+.- .+.-+..+|..++..+++-+|.+|.+++.-.+.. .+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~G--gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~-~~ 90 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLG--GISLIGSLLNDPNPSVREKALNALNNLSVNDENQ-EQ 90 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcC--CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH-HH
Confidence 577777776 6799999999999999999999998887654 5667889999999999999999999998765444 34
Q ss_pred HhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHHhc-chhhHHHHHHHHHHHhcCCCC
Q 012499 372 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFS-DGRYSDTFARILYELTSRPNN 450 (462)
Q Consensus 372 ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~~s-D~~~~~~~~~iL~~l~~~~~~ 450 (462)
| +-.|.++++.+...+-+.++=.-+-..|-+|+-.++++.++..+=..|+.+-.+ +.++....-++|.-||.++..
T Consensus 91 I---k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 91 I---KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred H---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 4 235888888776654456665557788999999999999998777777775554 777778889999999988764
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.11 E-value=0.04 Score=61.90 Aligned_cols=167 Identities=17% Similarity=0.113 Sum_probs=107.2
Q ss_pred hhCcchHHH-HHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHH
Q 012499 234 AQHRHCLET-VFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAA 312 (462)
Q Consensus 234 A~~~~~l~~-LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aL 312 (462)
=-||.+++. +.++..+.- ..-.+.+.=+|.|++-..-+.. .-+-+- -+....-+..|+++|.++|...+..+.
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n---~~TlEasaGaLQNltA~~~~~~--~~~~~~-v~~kekgl~~l~~ll~~~~~~vv~s~a 587 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKN---DNTLEASAGALQNLTAGLWTWS--EYMRGA-VFRKEKGLPPLVELLRNDDSDVVRSAA 587 (717)
T ss_pred eecHHHHHHHHHHHHHhcc---hHHHHHhhhhHhhhhccCCcch--hHHHhh-hhhhccCccHHHHHHhcCCchHHHHHH
Confidence 336777776 333332211 1345566666777765444431 000000 001223456778889999999999999
Q ss_pred HHHHHhhcCCCCccccCCCchHHHHHHHHhcCC------cHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhh
Q 012499 313 ELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSL------PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVI 386 (462)
Q Consensus 313 E~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l------~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll 386 (462)
-+|.+|+...+|.++|-. ..+..+|+.|.- .+.+.+.+.+-.|.++..-+...+..+ ..-+-+..|+.+.
T Consensus 588 ~~LrNls~d~rnk~ligk---~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl-~~~~g~~kL~~I~ 663 (717)
T KOG1048|consen 588 GALRNLSRDIRNKELIGK---YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDL-LEIKGIPKLRLIS 663 (717)
T ss_pred HHHhhhccCchhhhhhhc---chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHH-HhccChHHHHHHh
Confidence 999999999999999883 245566666642 346777778888888887666555443 4445788999888
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCC
Q 012499 387 KTPHPVPEVCRKAAMILESLVSEPQ 411 (462)
Q Consensus 387 ~~~h~~~em~rrAA~~L~~la~~p~ 411 (462)
...| .++.+|-|+.-|..|=..-|
T Consensus 664 ~s~~-S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 664 KSQH-SPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred cccC-CHHHHHHHHHHHHHHHHHHH
Confidence 7765 47778877777776654443
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.10 E-value=0.13 Score=56.13 Aligned_cols=166 Identities=16% Similarity=0.124 Sum_probs=117.1
Q ss_pred cchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 012499 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLG 316 (462)
Q Consensus 237 ~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~ 316 (462)
+....+|..+++. .++.+|+.++-.+++++.+-+... -.+.+.-++..|..|+.++|-...-.|..+|.
T Consensus 76 ~~~~~~L~~gL~h---~~~~Vr~l~l~~l~~~~~~~~~~~--------~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~ 144 (503)
T PF10508_consen 76 PQYQPFLQRGLTH---PSPKVRRLALKQLGRIARHSEGAA--------QLLVDNELLPLIIQCLRDPDLSVAKAAIKALK 144 (503)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCHHHH--------HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3344555555542 234699999999999886543310 01223456788999999999999999999999
Q ss_pred HhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHH
Q 012499 317 RLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVC 396 (462)
Q Consensus 317 kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~ 396 (462)
+|+.++.+.+.+.+. .....+..++.-++..++.-++|++.+++..+.++...+ ...|.++.+++.++.. ..=+-
T Consensus 145 ~l~~~~~~~~~l~~~--~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~-~~sgll~~ll~eL~~d--DiLvq 219 (503)
T PF10508_consen 145 KLASHPEGLEQLFDS--NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV-VNSGLLDLLLKELDSD--DILVQ 219 (503)
T ss_pred HHhCCchhHHHHhCc--chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH-HhccHHHHHHHHhcCc--cHHHH
Confidence 999987655433221 147788888887788888899999999999999886544 4467999999988774 22222
Q ss_pred HHHHHHHHHhhcCCCchhhHHh
Q 012499 397 RKAAMILESLVSEPQNRVLLLA 418 (462)
Q Consensus 397 rrAA~~L~~la~~p~nr~~ll~ 418 (462)
.-|..+|..||+.|.+..++..
T Consensus 220 lnalell~~La~~~~g~~yL~~ 241 (503)
T PF10508_consen 220 LNALELLSELAETPHGLQYLEQ 241 (503)
T ss_pred HHHHHHHHHHHcChhHHHHHHh
Confidence 3456667777777776665543
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.98 E-value=0.11 Score=43.25 Aligned_cols=108 Identities=24% Similarity=0.236 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchh
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRV 414 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~ 414 (462)
+++.++++|...+..++..++.+|-+++......+..+.. .+.+..|+.++.+. ++++.+.|+.+|.+|+..+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSE--DEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcHHHH
Confidence 6777888888888899999999999999987777665554 58999999999875 68889999999999999885433
Q ss_pred hH-Hhh--HHHHHHHHh-cchhhHHHHHHHHHHHh
Q 012499 415 LL-LAY--ENAFAEILF-SDGRYSDTFARILYELT 445 (462)
Q Consensus 415 ~l-l~~--E~~l~~i~~-sD~~~~~~~~~iL~~l~ 445 (462)
.. ... -..|..+.- .|.++......+|..+.
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 322 333444322 26677777777776553
No 17
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.7 Score=48.78 Aligned_cols=218 Identities=19% Similarity=0.205 Sum_probs=135.6
Q ss_pred hhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHH
Q 012499 217 SNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAI 296 (462)
Q Consensus 217 s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l 296 (462)
+--|-||....+|..-+|+.-. +..|..++.. +|...+.|++.+|.|+.+--.=+. -. +..+ -+..+
T Consensus 147 VgCitnLaT~d~nk~kiA~sGa-L~pltrLaks---kdirvqrnatgaLlnmThs~EnRr------~L--V~aG-~lpvL 213 (550)
T KOG4224|consen 147 VGCITNLATFDSNKVKIARSGA-LEPLTRLAKS---KDIRVQRNATGALLNMTHSRENRR------VL--VHAG-GLPVL 213 (550)
T ss_pred hhhhhhhhccccchhhhhhccc-hhhhHhhccc---chhhHHHHHHHHHHHhhhhhhhhh------hh--hccC-Cchhh
Confidence 4446678777999999998665 4555555443 455689999999999986322110 00 0000 12446
Q ss_pred HhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcch
Q 012499 297 MGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASER 376 (462)
Q Consensus 297 ~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~ 376 (462)
.+.+.|.|...+-.|--+++.+++...|...+.+.-|.+...+|+|+-..+.-....+=-.|-+|++--+.- +. ..+.
T Consensus 214 Vsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq-~e-iv~a 291 (550)
T KOG4224|consen 214 VSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ-RE-IVEA 291 (550)
T ss_pred hhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh-hH-HHhc
Confidence 678899999999999999999999999999999999999999999998766544333333444444321111 11 1233
Q ss_pred hHHHHHHHh-----------------------------------------hcCCCCChHHHHHHHHHHHHhhc-CCCchh
Q 012499 377 WAIDRLLRV-----------------------------------------IKTPHPVPEVCRKAAMILESLVS-EPQNRV 414 (462)
Q Consensus 377 ~~V~~LV~l-----------------------------------------l~~~h~~~em~rrAA~~L~~la~-~p~nr~ 414 (462)
+++.+||+| +.-+. |.|+-+-|-.||.+||- ..-|++
T Consensus 292 g~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d-nEeiqchAvstLrnLAasse~n~~ 370 (550)
T KOG4224|consen 292 GSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD-NEEIQCHAVSTLRNLAASSEHNVS 370 (550)
T ss_pred CCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC-chhhhhhHHHHHHHHhhhhhhhhH
Confidence 344444444 44432 56677788899999987 556777
Q ss_pred hHHhhH--HHHHHHHhcchhhH--HHHHHHHHHHhcCCCCc
Q 012499 415 LLLAYE--NAFAEILFSDGRYS--DTFARILYELTSRPNNK 451 (462)
Q Consensus 415 ~ll~~E--~~l~~i~~sD~~~~--~~~~~iL~~l~~~~~~~ 451 (462)
.+.--- +.|-++ +.|.+|+ ..|+-++-+|+=..+.|
T Consensus 371 ~i~esgAi~kl~eL-~lD~pvsvqseisac~a~Lal~d~~k 410 (550)
T KOG4224|consen 371 VIRESGAIPKLIEL-LLDGPVSVQSEISACIAQLALNDNDK 410 (550)
T ss_pred HHhhcCchHHHHHH-HhcCChhHHHHHHHHHHHHHhccccH
Confidence 662110 111111 1244433 44555565665555555
No 18
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=0.3 Score=52.94 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH
Q 012499 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 334 (462)
Q Consensus 255 ~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~ 334 (462)
++|...|+-.|-|+|..+.+. +++--+.+++.+..+|.-+.-+..+.....|-||++.++|.....+.-
T Consensus 277 eqLLrva~ylLlNlAed~~~E---------lKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~-- 345 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVE---------LKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNG-- 345 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHH---------HHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhcc--
Confidence 467777888888988755443 345557788889999988888899999999999999999987654332
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCC-CCChHHHHHHHHHHHHhhcCCCch
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP-HPVPEVCRKAAMILESLVSEPQNR 413 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~-h~~~em~rrAA~~L~~la~~p~nr 413 (462)
+.++++.+....+.+++-+||-+|++||==+..- .+ +-.-|.+.+|++|+-.. |+.. |...|-+|+....-+
T Consensus 346 iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr-~K-Mv~~GllP~l~~ll~~d~~~~i-----A~~~lYh~S~dD~~K 418 (791)
T KOG1222|consen 346 IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLR-PK-MVNGGLLPHLASLLDSDTKHGI-----ALNMLYHLSCDDDAK 418 (791)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhhcccccccc-HH-HhhccchHHHHHHhCCcccchh-----hhhhhhhhccCcHHH
Confidence 8899999999999999999999999998643222 11 23457899999999554 3333 566788899999999
Q ss_pred hhHHhhH
Q 012499 414 VLLLAYE 420 (462)
Q Consensus 414 ~~ll~~E 420 (462)
++|..-+
T Consensus 419 ~MfayTd 425 (791)
T KOG1222|consen 419 AMFAYTD 425 (791)
T ss_pred HHHHHHH
Confidence 9886544
No 19
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.78 E-value=0.27 Score=42.19 Aligned_cols=92 Identities=20% Similarity=0.212 Sum_probs=68.5
Q ss_pred HHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCC
Q 012499 310 AAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 389 (462)
Q Consensus 310 ~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~ 389 (462)
++|=+|...++.-... +.++++.+++-+...+..+|.-+|-++.|+||+++..-... .+-+-+...+.|.+++.+.
T Consensus 5 ggli~Laa~ai~l~~~--~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKD--ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSADP 80 (97)
T ss_pred HHHHHHHHHHHHchHh--HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 3444555554443322 55666778888999999999999999999999999864433 2336677889999999888
Q ss_pred CCChHHHHHHHHHHHHhhc
Q 012499 390 HPVPEVCRKAAMILESLVS 408 (462)
Q Consensus 390 h~~~em~rrAA~~L~~la~ 408 (462)
+++ +|.+|..|-+|-|
T Consensus 81 d~~---Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 81 DEN---VRSAAELLDRLLK 96 (97)
T ss_pred chh---HHHHHHHHHHHhc
Confidence 653 6889999988755
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.76 E-value=1.3 Score=47.37 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=107.6
Q ss_pred hHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHh
Q 012499 239 CLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRL 318 (462)
Q Consensus 239 ~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL 318 (462)
+...+..++.+. ++.+|..|.-.+.++... . |.. +... +...+..+|.++|...+..|+.++..+
T Consensus 115 l~~~v~~ll~~~---~~~VRk~A~~~l~~i~~~-----~----p~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 115 LIPDVIKLLSDP---SPYVRKKAALALLKIYRK-----D----PDL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHHSS---SHHHHHHHHHHHHHHHHH-----C----HCC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC---chHHHHHHHHHHHHHhcc-----C----HHH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 444455555432 235899999888888753 1 111 1112 567788888889999999999999998
Q ss_pred hcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH----------------------------
Q 012499 319 IINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL---------------------------- 370 (462)
Q Consensus 319 ~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~---------------------------- 370 (462)
..|.+......+++++.+.+++..+++-++...+.+|..++........
T Consensus 180 ---~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 180 ---KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp ---HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4444444466777788888887887777777777777777665433321
Q ss_pred HHhc----chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHHh-cchhhHHHHHHHHHHHh
Q 012499 371 KLAS----ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILF-SDGRYSDTFARILYELT 445 (462)
Q Consensus 371 ~ia~----~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~~-sD~~~~~~~~~iL~~l~ 445 (462)
.+.. ...++..|++|+++. ++++---|..+|..+++.- .+.+...+..+.-+.. .|..+...-.++|+.+.
T Consensus 257 ~l~~~~~~~~~~~~~L~~lL~s~--~~nvr~~~L~~L~~l~~~~--~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 257 KLSPSPELLQKAINPLIKLLSSS--DPNVRYIALDSLSQLAQSN--PPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp HHSSSHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHCCHC--HHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred HhhcchHHHHhhHHHHHHHhhcc--cchhehhHHHHHHHhhccc--chhhhhhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 1111 123345555555522 3333333444455555443 2222233333333332 36666666667777776
Q ss_pred cC
Q 012499 446 SR 447 (462)
Q Consensus 446 ~~ 447 (462)
+.
T Consensus 333 ~~ 334 (526)
T PF01602_consen 333 NE 334 (526)
T ss_dssp -H
T ss_pred cc
Confidence 53
No 21
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=90.96 E-value=5.4 Score=42.03 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=82.7
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC------
Q 012499 337 KRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP------ 410 (462)
Q Consensus 337 ~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p------ 410 (462)
..++++|.....++++-++=+|=+++. +...|+-+..+-++.+.|+.++...-+...|+|-|.=||++|++.-
T Consensus 160 PlfiqlL~s~~~~V~eQavWALGNiAG-DS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 160 PLFIQLLSSTEDDVREQAVWALGNIAG-DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred HHHHHHHcCchHHHHHHHHHHhccccC-CchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 357788998999999999988888875 4555677888889999999999766444579999999999999863
Q ss_pred CchhhHHhhHHHHHHHHh-cchhhHHHHHHHHHHHhcCCCCccccc
Q 012499 411 QNRVLLLAYENAFAEILF-SDGRYSDTFARILYELTSRPNNKVASA 455 (462)
Q Consensus 411 ~nr~~ll~~E~~l~~i~~-sD~~~~~~~~~iL~~l~~~~~~~~~~~ 455 (462)
.|.+.-+| .|+-+-. .|+++-.--.-.+-+|+-+++-|..++
T Consensus 239 ~~isqalp---iL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~av 281 (526)
T COG5064 239 SNISQALP---ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAV 281 (526)
T ss_pred HHHHHHHH---HHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 23333333 3444444 377765555555667777777775543
No 22
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.92 E-value=1.9 Score=43.85 Aligned_cols=155 Identities=16% Similarity=0.084 Sum_probs=93.5
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCcccc--CCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012499 292 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFL--LPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 369 (462)
Q Consensus 292 ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~l--l~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~ 369 (462)
.|..++..+.++|......|+.+|++|.........- .+.++.+++-+...+..++..++..++.+|..|... ...
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~- 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEY- 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHH-
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chh-
Confidence 4666677888999999999999999998886543322 122233333344444446778999999999999743 333
Q ss_pred HHHhcchhHHHHHHHhh-----cCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHH-----hcchhhHHHHHH
Q 012499 370 LKLASERWAIDRLLRVI-----KTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL-----FSDGRYSDTFAR 439 (462)
Q Consensus 370 ~~ia~~~~~V~~LV~ll-----~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~-----~sD~~~~~~~~~ 439 (462)
+...-..+.|..|+.++ ..+..+..+.-.+...+-.|+=+|+....+..+. -+..++ ..-++|..+.--
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHH
Confidence 34444488999999998 2222345677888888888888888877776555 222222 125566666555
Q ss_pred HHHHHhcCCC
Q 012499 440 ILYELTSRPN 449 (462)
Q Consensus 440 iL~~l~~~~~ 449 (462)
+|.-|-+.+.
T Consensus 263 ~l~Nl~~~~~ 272 (312)
T PF03224_consen 263 ILRNLLSKAP 272 (312)
T ss_dssp HHHHTTSSSS
T ss_pred HHHHHHhccH
Confidence 5655554443
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.50 E-value=2.9 Score=49.41 Aligned_cols=129 Identities=20% Similarity=0.253 Sum_probs=86.8
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
++-|-||.- |+ +=|.++.||++|.++ +++.+|+.+|=||.++...+.-.. . .| + +.++..
T Consensus 104 iAeia~~~l--~e------~WPell~~L~q~~~S---~~~~~rE~al~il~s~~~~~~~~~----~-~~--~--~~l~~l 163 (1075)
T KOG2171|consen 104 IAEIARNDL--PE------KWPELLQFLFQSTKS---PNPSLRESALLILSSLPETFGNTL----Q-PH--L--DDLLRL 163 (1075)
T ss_pred HHHHHHhcc--cc------chHHHHHHHHHHhcC---CCcchhHHHHHHHHhhhhhhcccc----c-hh--H--HHHHHH
Confidence 788888864 33 679999999999987 444699999999999987666652 1 12 1 123344
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcCCC-Ccccc---CCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIINPD-NEPFL---LPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 364 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~-Ne~~l---l~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~ 364 (462)
+.+++..+.+.....|+++++.++..-+ |.+.. -..+|.++.-+-+.+...|.+-..-++++|--|++.
T Consensus 164 f~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~ 236 (1075)
T KOG2171|consen 164 FSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES 236 (1075)
T ss_pred HHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh
Confidence 4456766665688999999999887764 43332 234565666666666666666566666666655554
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=89.84 E-value=3.4 Score=32.99 Aligned_cols=81 Identities=28% Similarity=0.327 Sum_probs=60.8
Q ss_pred HHHhhh-CCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 295 AIMGIL-GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 295 ~l~~~L-~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
.+...| .++|......++++|+++. .++.+..+++++..+|..++..++..|.++ |
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i---~-------- 59 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG------------DPEAIPALIELLKDEDPMVRRAAARALGRI---G-------- 59 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC---H--------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh---C--------
Confidence 455555 7888888899999999432 135888999999999999999999988876 2
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHH
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAM 401 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~ 401 (462)
.+.+++.|+.++... +.+.+|++|.
T Consensus 60 -~~~~~~~L~~~l~~~--~~~~vr~~a~ 84 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDD--DDEVVREAAA 84 (88)
T ss_dssp -HHHTHHHHHHHHTC---SSHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCC--CcHHHHHHHH
Confidence 355889999988776 3455666554
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=89.40 E-value=2.8 Score=44.72 Aligned_cols=166 Identities=15% Similarity=0.136 Sum_probs=109.0
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
.|-++|..+-=.++.+.. ..+..+ -+...++..-|.+++-.....||++|++++. .+ ..
T Consensus 54 ~~~~~Krl~yl~l~~~~~---------~~~~~~----~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~----~~----~~ 112 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLH---------EDPELL----ILIINSLQKDLNSPNPYIRGLALRTLSNIRT----PE----MA 112 (526)
T ss_dssp SSHHHHHHHHHHHHHHTT---------TSHHHH----HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S----HH----HH
T ss_pred CCHHHHHHHHHHHHHHhh---------cchhHH----HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc----cc----hh
Confidence 334577776666665553 222210 1334566677889999999999999999982 22 22
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCc
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQN 412 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~n 412 (462)
+.++..+.++|..++..++-.|+-+++.+...+.+.. ... .++.|..++.+. ++.+..-|...+..+ +.++.
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~----~~~-~~~~l~~lL~d~--~~~V~~~a~~~l~~i-~~~~~ 184 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV----EDE-LIPKLKQLLSDK--DPSVVSAALSLLSEI-KCNDD 184 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH----HGG-HHHHHHHHTTHS--SHHHHHHHHHHHHHH-HCTHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH----HHH-HHHHHhhhccCC--cchhHHHHHHHHHHH-ccCcc
Confidence 4578888999999999999999999999998755532 112 588899999666 466676666666677 33332
Q ss_pred h--hhHHhhHHHHHHH-HhcchhhHHHHHHHHHHHhcC
Q 012499 413 R--VLLLAYENAFAEI-LFSDGRYSDTFARILYELTSR 447 (462)
Q Consensus 413 r--~~ll~~E~~l~~i-~~sD~~~~~~~~~iL~~l~~~ 447 (462)
- ..+-++=+.|..+ ...||-....+.++|-.+...
T Consensus 185 ~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 185 SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence 2 3444444455544 455777777777777665543
No 26
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.14 E-value=19 Score=33.55 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH
Q 012499 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 334 (462)
Q Consensus 255 ~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~ 334 (462)
+.+|.+++.+++-++.... . .-......+..+|.+++-.....|+-+|.+|..++- ..+-++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~---------~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~ 63 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP---------N----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQ 63 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc---------H----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhh
Confidence 4689999999996654221 1 113456788899999999999999999999987532 334456
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHHHHhcchhHHHHHHHhhcC-CCC-----ChHHHHHHHHHHH-Hh
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKT-PHP-----VPEVCRKAAMILE-SL 406 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~-~~~~~~~ia~~~~~V~~LV~ll~~-~h~-----~~em~rrAA~~L~-~l 406 (462)
++.+++.+|..+|.+++..+..++..++.- +... + ....++.+..|-.. +|+ +.+--++-...|. .+
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~---i--~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNI---I--YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchH---H--HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHc
Confidence 778888899999999999999999999886 2222 1 12222333333221 122 2332333333444 44
Q ss_pred hcCCCchhhHHhhHHHHHHHHhcchhhHHHHHHHHHHHh
Q 012499 407 VSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELT 445 (462)
Q Consensus 407 a~~p~nr~~ll~~E~~l~~i~~sD~~~~~~~~~iL~~l~ 445 (462)
.+..++-+++-.+=+|++.-.+ ......+.+++|=|+
T Consensus 139 ~~d~~~~~l~~kl~~~~~~~~~--~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 139 DKDKQKESLVEKLCQRFLNAVV--DEDERVLRDILYCLS 175 (178)
T ss_pred CcHHHHHHHHHHHHHHHHHHcc--cccHHHHHHHHHHHH
Confidence 4455555555555555554333 334455666666554
No 27
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=88.81 E-value=2.8 Score=50.98 Aligned_cols=195 Identities=18% Similarity=0.129 Sum_probs=115.8
Q ss_pred HHhhhhhhhhhhcCCCCCccHHHHhhCcchHHHH---Hhhh---cccCCCh---HHHHHHHHHHHHhhcCccccccccCC
Q 012499 210 QQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETV---FQCI---EDHVTED---EELVTNALETIVNLAPLLDLRIFSSS 280 (462)
Q Consensus 210 qr~a~~~s~ILRNLSf~p~N~~~LA~~~~~l~~L---Llc~---~~~~~~d---~eLr~~aLdil~nIA~~l~L~~~~~~ 280 (462)
|+|+ +...|=-+||-+|--+.|-.-=. |..+ ++.- |-..++| -.||.|++-.|.|+.- -|... +.
T Consensus 314 ~lca--A~~~lMK~SFDEEhR~aM~ELG~-LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTF-GDv~N--Ka 387 (2195)
T KOG2122|consen 314 QLCA--ALCTLMKLSFDEEHRHAMNELGG-LQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTF-GDVAN--KA 387 (2195)
T ss_pred hhHH--HHHHHHHhhccHHHHHHHHHhhh-HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccc-ccccc--hh
Confidence 4544 67788889999997777765322 1211 2111 2212233 3699999999999873 22210 00
Q ss_pred cchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcC-CCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 012499 281 KQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIIN-PDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALY 359 (462)
Q Consensus 281 ~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~-~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY 359 (462)
-.| ..+=+.++|+..|.|.--.++---.-+|.+|+=+ |.|...+++-...+-.-..-.|..+..--+-++|.+|.
T Consensus 388 ~LC----s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALW 463 (2195)
T KOG2122|consen 388 TLC----SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALW 463 (2195)
T ss_pred hhh----hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHh
Confidence 001 1123456666666554333333233456666654 55555444433332222222233344556788999999
Q ss_pred HhhccCHHHHHHHhcchhHHHHHHHhhcCCCCC--hHHHHHHHHHHHHhhcCCCchh
Q 012499 360 NLAEVNVDCRLKLASERWAIDRLLRVIKTPHPV--PEVCRKAAMILESLVSEPQNRV 414 (462)
Q Consensus 360 ~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~--~em~rrAA~~L~~la~~p~nr~ 414 (462)
||+.=-......||.++|++.-||.+|+...+. -.+.--|..+|-+.+++=.|+.
T Consensus 464 NLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E 520 (2195)
T KOG2122|consen 464 NLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCE 520 (2195)
T ss_pred hhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccc
Confidence 999987777779999999999999999987542 2356667777877766654433
No 28
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=88.09 E-value=1.3 Score=50.25 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCc--
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQN-- 412 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~n-- 412 (462)
-+.+.+.+|...+...+..+=-+|=.+.-.+..+.. -..+=+.|..||.++.+. +.|+-|.|..+|.+|+=.-.+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~-~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKS-RVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHH-HHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhcccCCcc
Confidence 466778888888888887776666666666666655 556667899999999876 889999999999999987766
Q ss_pred hhhHHhhHHHHHHHH---h--cchhhHHHHHHHHHHHhcCCCCccccc
Q 012499 413 RVLLLAYENAFAEIL---F--SDGRYSDTFARILYELTSRPNNKVASA 455 (462)
Q Consensus 413 r~~ll~~E~~l~~i~---~--sD~~~~~~~~~iL~~l~~~~~~~~~~~ 455 (462)
--+-++.++.+-.++ - .|-++...|+.+||-|||...=|+..+
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii 358 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLII 358 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHH
Confidence 333355555444433 2 499999999999999999876666544
No 29
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=87.86 E-value=3.4 Score=43.45 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=97.6
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
++-.|-|.+---.+-+...-.-..+.++++++.+. ..++|+.+.=.|+|||+.-.- |.=++..--.++.
T Consensus 135 AaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~---~~~V~eQavWALGNiAGDS~~--------~RD~vL~~galep 203 (526)
T COG5064 135 AAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST---EDDVREQAVWALGNIAGDSEG--------CRDYVLQCGALEP 203 (526)
T ss_pred HHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc---hHHHHHHHHHHhccccCCchh--------HHHHHHhcCchHH
Confidence 44444454433333332222333344444444442 236999999999999984332 1111332234677
Q ss_pred HHhhhCCCCH--HHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 296 IMGILGSPFK--AWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 296 l~~~L~S~Dr--~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
++..+.|+-+ ++++.+-=+|++||.... -+-=-....+.+.-+..|+-..|.+.+.-+.=++..|+...+.+-. +.
T Consensus 204 lL~ll~ss~~~ismlRn~TWtLSNlcRGkn-P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~-av 281 (526)
T COG5064 204 LLGLLLSSAIHISMLRNATWTLSNLCRGKN-PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQ-AV 281 (526)
T ss_pred HHHHHHhccchHHHHHHhHHHHHHhhCCCC-CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHH-HH
Confidence 7787777655 889999999999998643 1000011123445566677778988887777778888887666644 44
Q ss_pred cchhHHHHHHHhhcCC
Q 012499 374 SERWAIDRLLRVIKTP 389 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~ 389 (462)
..-|.-++||.+|+++
T Consensus 282 ld~g~~~RLvElLs~~ 297 (526)
T COG5064 282 LDVGIPGRLVELLSHE 297 (526)
T ss_pred HhcCCcHHHHHHhcCc
Confidence 4456778899999875
No 30
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.25 E-value=6.7 Score=45.13 Aligned_cols=123 Identities=20% Similarity=0.183 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCC------CccccCCC----chH------HHHHHHHhcCCcHHHHHHHHHHHHHHhhc-
Q 012499 301 GSPFKAWHCAAAELLGRLIINPD------NEPFLLPF----VPQ------IHKRLVDLMSLPAFDAQAAAVGALYNLAE- 363 (462)
Q Consensus 301 ~S~Dr~~ii~aLE~L~kL~~~~~------Ne~~ll~~----~~~------i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~- 363 (462)
...|-..+-.+||++..+..+++ |..--..+ .++ .+.-++.++..-|.-++-+++++|-++-+
T Consensus 73 D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~ 152 (970)
T KOG0946|consen 73 DYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSC 152 (970)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhc
Confidence 46677888889999999999986 43311111 111 45556777777888999999999998766
Q ss_pred cCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHH-HHHhhcCCCchhhHHhhHHHHHHH
Q 012499 364 VNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMI-LESLVSEPQNRVLLLAYENAFAEI 426 (462)
Q Consensus 364 ~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~-L~~la~~p~nr~~ll~~E~~l~~i 426 (462)
.+......|...|-.|..|+.+|.+.| |+.|-+|.. |..|++.-.+.+-++.||+.+..+
T Consensus 153 r~~e~q~~ll~~P~gIS~lmdlL~Dsr---E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerL 213 (970)
T KOG0946|consen 153 RPTELQDALLVSPMGISKLMDLLRDSR---EPIRNEAILLLSELVKDNSSIQKLVAFENAFERL 213 (970)
T ss_pred CCHHHHHHHHHCchhHHHHHHHHhhhh---hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 578888889999999999999998875 446766654 456888888999999999987763
No 31
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.84 E-value=11 Score=43.29 Aligned_cols=114 Identities=27% Similarity=0.353 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhcCccccccccCCcchhhhhc---------H---HHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCC
Q 012499 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKIT---------E---KRAVEAIMGILGSPFKAWHCAAAELLGRLIINP 322 (462)
Q Consensus 255 ~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~---------~---~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~ 322 (462)
.+||..|.+|++..-..=|-. -.|+.++ + .+==.||.+||.-+|-++.++|||.+.+| .|+
T Consensus 308 ~~LrvlainiLgkFL~n~d~N------irYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l-vn~ 380 (866)
T KOG1062|consen 308 SGLRVLAINILGKFLLNRDNN------IRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL-VNE 380 (866)
T ss_pred chHHHHHHHHHHHHhcCCccc------eeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hcc
Confidence 479999999988543221111 1221111 0 11126789999999999999999999885 677
Q ss_pred CCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh-cchhHHHHHHHhhcCC
Q 012499 323 DNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA-SERWAIDRLLRVIKTP 389 (462)
Q Consensus 323 ~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia-~~~~~V~~LV~ll~~~ 389 (462)
.|+. .+-++++.+|..-|.+...-+..-+.-+++ +.| ...|-||++.+.++++
T Consensus 381 ~Nv~-------~mv~eLl~fL~~~d~~~k~~~as~I~~laE-------kfaP~k~W~idtml~Vl~~a 434 (866)
T KOG1062|consen 381 SNVR-------VMVKELLEFLESSDEDFKADIASKIAELAE-------KFAPDKRWHIDTMLKVLKTA 434 (866)
T ss_pred ccHH-------HHHHHHHHHHHhccHHHHHHHHHHHHHHHH-------hcCCcchhHHHHHHHHHHhc
Confidence 7764 367888999987788777665555554444 333 5677788888887665
No 32
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=86.52 E-value=1.4 Score=31.12 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=29.3
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 012499 373 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS 408 (462)
Q Consensus 373 a~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~ 408 (462)
....|.|..|+.++++ +++++.+.|+.+|.+|++
T Consensus 8 i~~~g~i~~Lv~ll~~--~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 8 IVEAGGIPPLVQLLKS--PDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHTTHHHHHHHHTTS--SSHHHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHcC--CCHHHHHHHHHHHHHHhC
Confidence 3467899999999994 478999999999999975
No 33
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.09 E-value=21 Score=41.26 Aligned_cols=118 Identities=17% Similarity=0.271 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhC-CCCHHHHHHHHHHHHHhhcCCCC-cccc----
Q 012499 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILG-SPFKAWHCAAAELLGRLIINPDN-EPFL---- 328 (462)
Q Consensus 255 ~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~-S~Dr~~ii~aLE~L~kL~~~~~N-e~~l---- 328 (462)
..-.+.+=|+|+.+|..=+.+. + +....+|++|..... .++-+....|..||+|+-.+.+| ..++
T Consensus 266 ~daSd~M~DiLaqvatntdssk---N------~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 266 ADASDLMNDILAQVATNTDSSK---N------AGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred ccHHHHHHHHHHHHHhcccccc---c------chhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 3477889999999998877762 2 334678888765332 34456778899999999998765 3333
Q ss_pred -C---CCchHHHHH----HHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCC
Q 012499 329 -L---PFVPQIHKR----LVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 389 (462)
Q Consensus 329 -l---~~~~~i~~r----lv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~ 389 (462)
. +.-|+.-+| |++.|-.+|+-++--|||++|.|+.- .+++..|+.|+.+|+..
T Consensus 337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~--------~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE--------SNVRVMVKELLEFLESS 397 (866)
T ss_pred HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHhc
Confidence 2 223443333 78899999999999999999999873 34556788888888665
No 34
>PRK09687 putative lyase; Provisional
Probab=83.93 E-value=51 Score=33.30 Aligned_cols=94 Identities=19% Similarity=0.113 Sum_probs=44.3
Q ss_pred HHHHHhh-hCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012499 293 VEAIMGI-LGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 371 (462)
Q Consensus 293 l~~l~~~-L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ 371 (462)
+..+... ++.+|-.....|.++|+.++....+- .+.....+...+..++..++.+++..|-++
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~---------- 155 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY------SPKIVEQSQITAFDKSTNVRFAVAFALSVI---------- 155 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc------chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------
Confidence 3444433 34555555556777777765433211 222344444444445555555555444211
Q ss_pred HhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012499 372 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESL 406 (462)
Q Consensus 372 ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~l 406 (462)
..+.+|+.|+.++++. ++++=..|+.+|-.+
T Consensus 156 --~~~~ai~~L~~~L~d~--~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 156 --NDEAAIPLLINLLKDP--NGDVRNWAAFALNSN 186 (280)
T ss_pred --CCHHHHHHHHHHhcCC--CHHHHHHHHHHHhcC
Confidence 1233555566666544 334444444444444
No 35
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=83.63 E-value=12 Score=40.51 Aligned_cols=201 Identities=13% Similarity=0.105 Sum_probs=121.1
Q ss_pred hhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhh
Q 012499 220 IRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGI 299 (462)
Q Consensus 220 LRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~ 299 (462)
+-=+||.-+|...+.+.-.+.--++++...... +.+++.++++++..|..=... . ..-..-++.++...
T Consensus 205 ~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~--~d~~eM~feila~~aend~Vk--------l-~la~~gl~e~~~~l 273 (604)
T KOG4500|consen 205 FNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVR--EDIDEMIFEILAKAAENDLVK--------L-SLAQNGLLEDSIDL 273 (604)
T ss_pred ccHHHHHHHhhhhhhccchHHHHHHHHHHHhhc--cchhhHHHHHHHHHhcCccee--------e-ehhhcchHHHHHHH
Confidence 333566666666665555544444444433322 258899999998877421111 0 01111245555544
Q ss_pred hC--------CCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012499 300 LG--------SPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 371 (462)
Q Consensus 300 L~--------S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ 371 (462)
+. ++++...-++-|..--|...++-...+ -.-|+++++++.|+..+|..++-+..=++-+++.-+..| ..
T Consensus 274 v~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L-~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~c-i~ 351 (604)
T KOG4500|consen 274 VRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKL-HADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDIC-IQ 351 (604)
T ss_pred HHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHH-hcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHH-HH
Confidence 33 233444444444444444444322222 234679999999999999999999999999999876655 33
Q ss_pred HhcchhHHHHHHHhhcCCC---CChHHHHHHHHHHHHhhcCCCchhhHHhh---HHHHHHHHhcchhhH
Q 012499 372 LASERWAIDRLLRVIKTPH---PVPEVCRKAAMILESLVSEPQNRVLLLAY---ENAFAEILFSDGRYS 434 (462)
Q Consensus 372 ia~~~~~V~~LV~ll~~~h---~~~em~rrAA~~L~~la~~p~nr~~ll~~---E~~l~~i~~sD~~~~ 434 (462)
..+++.+..|+.++..+| +|.+.---+-..|.+|+=---||..|+|- |.-|..+-.--|+|.
T Consensus 352 -~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~ 419 (604)
T KOG4500|consen 352 -LVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVT 419 (604)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcch
Confidence 345668999999986654 35555555566788888877899888775 444444444344443
No 36
>PRK09687 putative lyase; Provisional
Probab=82.84 E-value=22 Score=35.88 Aligned_cols=30 Identities=3% Similarity=0.018 Sum_probs=19.3
Q ss_pred hHHHHHhhhcccCCChHHHHHHHHHHHHhhcC
Q 012499 239 CLETVFQCIEDHVTEDEELVTNALETIVNLAP 270 (462)
Q Consensus 239 ~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~ 270 (462)
++..|...+..+ +|.++|..+...|+++..
T Consensus 91 a~~~L~~l~~~D--~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 91 VFNILNNLALED--KSACVRASAINATGHRCK 120 (280)
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHhcccc
Confidence 445554342222 445799999999999864
No 37
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=82.38 E-value=8.4 Score=30.65 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=59.5
Q ss_pred HHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcC
Q 012499 242 TVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIIN 321 (462)
Q Consensus 242 ~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~ 321 (462)
+|+..+..+ ++..+|..+...|+++.. ......+..++.++|-.....|.++|+++-
T Consensus 3 ~L~~~l~~~--~~~~vr~~a~~~L~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-- 59 (88)
T PF13646_consen 3 ALLQLLQND--PDPQVRAEAARALGELGD-------------------PEAIPALIELLKDEDPMVRRAAARALGRIG-- 59 (88)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHCCTH-------------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHcCC-------------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--
Confidence 455555333 455799999999994431 134567778888999999999999999983
Q ss_pred CCCccccCCCchHHHHHHHHhcCCc-HHHHHHHHHHHH
Q 012499 322 PDNEPFLLPFVPQIHKRLVDLMSLP-AFDAQAAAVGAL 358 (462)
Q Consensus 322 ~~Ne~~ll~~~~~i~~rlv~lL~l~-D~~L~~~aLe~L 358 (462)
.++.+..+++++.-. +..++..|.+.|
T Consensus 60 ----------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 ----------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ----------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 245777888877654 456678887765
No 38
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=82.18 E-value=10 Score=46.48 Aligned_cols=215 Identities=19% Similarity=0.187 Sum_probs=132.2
Q ss_pred hhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchh------hhh---
Q 012499 217 SNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSY------IKI--- 287 (462)
Q Consensus 217 s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~------i~i--- 287 (462)
+..++-||=.|+--..|-+ ..|+.||+++.|..-.+|.+-|..+=..|.||-. +.|+- +++
T Consensus 215 ar~fLemSss~esCaamR~-SgCLpLLvQilH~~d~~~kear~~A~aALHNIVh---------SqPD~kr~RRE~kvL~l 284 (2195)
T KOG2122|consen 215 ARTFLEMSSSPESCAAMRR-SGCLPLLVQILHGPDDEDKEARKRASAALHNIVH---------SQPDEKRGRREKKVLHL 284 (2195)
T ss_pred HHHHHHhccCchhhHHHHh-ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhh---------cCcchhhhHHHHHHHHH
Confidence 5566777777887777766 5779999999886544566888999999998864 22211 111
Q ss_pred cHH--HHHHHHHhhhC--------CCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcC---------CcHH
Q 012499 288 TEK--RAVEAIMGILG--------SPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS---------LPAF 348 (462)
Q Consensus 288 ~~~--~ll~~l~~~L~--------S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~---------l~D~ 348 (462)
+++ ..+.++..++. -+|+..++.|+-+|=|++=-|.-....++.- -++-|.+||. .+|.
T Consensus 285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG--~LqAIaeLl~vDh~mhgp~tnd~ 362 (2195)
T KOG2122|consen 285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELG--GLQAIAELLQVDHEMHGPETNDG 362 (2195)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhh--hHHHHHHHHHHHHHhcCCCCCcH
Confidence 110 01122233343 3578889999999999887765433333211 1222223222 2343
Q ss_pred ---HHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC-CchhhHH---hhHH
Q 012499 349 ---DAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP-QNRVLLL---AYEN 421 (462)
Q Consensus 349 ---~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p-~nr~~ll---~~E~ 421 (462)
.|+-|++-.|-|||=.+......+|.+++.+.-+|+-|... ..|+.-=-|..|.||+=.- -|-.-.| -.=.
T Consensus 363 ~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~--peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVt 440 (2195)
T KOG2122|consen 363 ECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA--PEELLQVYASVLRNLSWRADSNMKKVLRETGSVT 440 (2195)
T ss_pred HHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC--hHHHHHHHHHHHHhccccccccHHHHHHhhhhHH
Confidence 68999999999999998888889999999999999988665 2345555666777776333 2322221 1223
Q ss_pred HHHHHHhc---chhhHHHHHHHHHHHhc
Q 012499 422 AFAEILFS---DGRYSDTFARILYELTS 446 (462)
Q Consensus 422 ~l~~i~~s---D~~~~~~~~~iL~~l~~ 446 (462)
.|++.+|- +..+..++ ..||-|+.
T Consensus 441 aLa~~al~~~kEsTLKavL-SALWNLSA 467 (2195)
T KOG2122|consen 441 ALAACALRNKKESTLKAVL-SALWNLSA 467 (2195)
T ss_pred HHHHHHHHhcccchHHHHH-HHHhhhhh
Confidence 44444442 34444433 34555554
No 39
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.45 E-value=18 Score=34.45 Aligned_cols=111 Identities=19% Similarity=0.071 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCC-CccccCCC--c
Q 012499 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPF--V 332 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~-Ne~~ll~~--~ 332 (462)
.+++.+-.++..|....... ++.++..+..+..+.....-..|++.|..+...-. +.+.+... +
T Consensus 109 ~i~~~a~~~L~~i~~~~~~~-------------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 109 FIREAANNALDAIIESCSYS-------------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHHHHHHHHHTTS-H---------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHHHHHHHHHCCcH-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 58888888888888654411 13445666677778888888899999999877765 56666543 4
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHHHHhcchhHH
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRLKLASERWAI 379 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~-~~~~~~~ia~~~~~V 379 (462)
+++..-++..|..++.+++.++-+++-.|.+. ++.+..-+..-+..+
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~ 223 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNI 223 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----------
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcc
Confidence 77889999999999999999999999999775 555544333333333
No 40
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.45 E-value=22 Score=36.17 Aligned_cols=177 Identities=17% Similarity=0.156 Sum_probs=110.3
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
.|.-+...+.-+++.++.+-......... . +. ..++..+...+.+++...+..|+.+|..|...+.....+..
T Consensus 117 ~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~-~---~l-~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-- 189 (312)
T PF03224_consen 117 NDSFIQLKAAFILTSLLSQGPKRSEKLVK-E---AL-PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-- 189 (312)
T ss_dssp SSHHHHHHHHHHHHHHHTSTTT--HHHHH-H---HH-HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--
T ss_pred CCHHHHHHHHHHHHHHHHcCCccccchHH-H---HH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--
Confidence 35567888888888888766554221000 0 00 23455555555566777789999999999999888777766
Q ss_pred hHHHHHHHHhc-------CCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 012499 333 PQIHKRLVDLM-------SLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILES 405 (462)
Q Consensus 333 ~~i~~rlv~lL-------~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~ 405 (462)
...++.++++| .-.+..++=.++=|+..||= +...+..+.... .|..|+.++.... -..+.|=+=.||.|
T Consensus 190 ~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~-~i~~L~~i~~~~~-KEKvvRv~la~l~N 266 (312)
T PF03224_consen 190 SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKY-LIPLLADILKDSI-KEKVVRVSLAILRN 266 (312)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTS-HHHHHHHHHHH---SHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccc-hHHHHHHHHHhcc-cchHHHHHHHHHHH
Confidence 44666777777 12445777778888887775 444445554444 9999999997773 35699999999999
Q ss_pred hhcCCC--chhhHHh--hHHHHHHHH---hcchhhHHHHHH
Q 012499 406 LVSEPQ--NRVLLLA--YENAFAEIL---FSDGRYSDTFAR 439 (462)
Q Consensus 406 la~~p~--nr~~ll~--~E~~l~~i~---~sD~~~~~~~~~ 439 (462)
|...+. +.+..+. .-+.+..+. .+|+...+-+..
T Consensus 267 l~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 267 LLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF 307 (312)
T ss_dssp TTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 998887 4444322 222222222 368887776654
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.30 E-value=20 Score=42.06 Aligned_cols=86 Identities=22% Similarity=0.247 Sum_probs=45.7
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcc
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASE 375 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~ 375 (462)
|..++..+|......|++.|+++...+. +...++..|.-+|..++..+++.|-.+. .
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~g~~~~-----------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~------------~ 836 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAELGCPPD-----------DVAAATAALRASAWQVRQGAARALAGAA------------A 836 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCcch-----------hHHHHHHHhcCCChHHHHHHHHHHHhcc------------c
Confidence 3344444444444555555555422211 3344555555555566666666554321 2
Q ss_pred hhHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012499 376 RWAIDRLLRVIKTPHPVPEVCRKAAMILESL 406 (462)
Q Consensus 376 ~~~V~~LV~ll~~~h~~~em~rrAA~~L~~l 406 (462)
+.++..|+.++++. +.++=+.|+..|..+
T Consensus 837 ~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 837 DVAVPALVEALTDP--HLDVRKAAVLALTRW 865 (897)
T ss_pred cchHHHHHHHhcCC--CHHHHHHHHHHHhcc
Confidence 34567778888766 455566666677665
No 42
>PF05536 Neurochondrin: Neurochondrin
Probab=80.25 E-value=21 Score=39.63 Aligned_cols=153 Identities=23% Similarity=0.240 Sum_probs=109.9
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCcc----ccCCCc-hHHHHHHHHhcCC----cHHHHHHHHHHHHHHhhc
Q 012499 293 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNEP----FLLPFV-PQIHKRLVDLMSL----PAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 293 l~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~----~ll~~~-~~i~~rlv~lL~l----~D~~L~~~aLe~LY~Ls~ 363 (462)
++.+..+|.+.|..-...+|=.+.|++.+.+... .|-+.+ +.++.|+.+=-.. +..+.+..++.+|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 5666778889998899999999999999765211 122322 3366665443333 456999999999999999
Q ss_pred cCHHHHHHHhcch---hHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhH--HHHHHHHhcchhhHHHHH
Q 012499 364 VNVDCRLKLASER---WAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYE--NAFAEILFSDGRYSDTFA 438 (462)
Q Consensus 364 ~~~~~~~~ia~~~---~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E--~~l~~i~~sD~~~~~~~~ 438 (462)
.. + +|..+ ..|-.|+..++.+.. .+|..-|-.+|..++.+|+-+..|+..+ +.|.++..+-+...+...
T Consensus 87 ~~-~----~a~~~~~~~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al 160 (543)
T PF05536_consen 87 DP-E----LASSPQMVSRIPLLLEILSSSSD-LETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIAL 160 (543)
T ss_pred Ch-h----hhcCHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHH
Confidence 32 2 33333 346677888877632 5899999999999999999999998854 356666666777778888
Q ss_pred HHHHHHhcCCCCc
Q 012499 439 RILYELTSRPNNK 451 (462)
Q Consensus 439 ~iL~~l~~~~~~~ 451 (462)
.+|.-+.++...+
T Consensus 161 ~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 161 NLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHhcchh
Confidence 8888877766533
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.19 E-value=74 Score=37.43 Aligned_cols=155 Identities=21% Similarity=0.110 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
+|..+|..+..+|+.+.+. -....|...|..+|...-..|++.|.++......++
T Consensus 633 ~d~~VR~~Av~~L~~~~~~-------------------~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~------ 687 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPP-------------------GFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAP------ 687 (897)
T ss_pred CCHHHHHHHHHHHhhhcch-------------------hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchH------
Confidence 5568999999999977531 123455566677777777777788877743322111
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH----------------HHHHHhcchhHHHHHHHhhcCCCCChHHH
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD----------------CRLKLASERWAIDRLLRVIKTPHPVPEVC 396 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~----------------~~~~ia~~~~~V~~LV~ll~~~h~~~em~ 396 (462)
.+...|..+|..++.++++.|-++...... +..++... +...-|..++.++ ++++-
T Consensus 688 -----~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~-~~~~~l~~~l~D~--~~~VR 759 (897)
T PRK13800 688 -----ALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV-DDVESVAGAATDE--NREVR 759 (897)
T ss_pred -----HHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc-cCcHHHHHHhcCC--CHHHH
Confidence 223334444555555555544433211100 00011100 0112234444444 66677
Q ss_pred HHHHHHHHHhhcCCCchhhHHhhHHHHHHH-HhcchhhHHHHHHHHHHHhc
Q 012499 397 RKAAMILESLVSEPQNRVLLLAYENAFAEI-LFSDGRYSDTFARILYELTS 446 (462)
Q Consensus 397 rrAA~~L~~la~~p~nr~~ll~~E~~l~~i-~~sD~~~~~~~~~iL~~l~~ 446 (462)
+.||..|-.+..... .+ .+. |..+ .=.|+.|-....+-|-++..
T Consensus 760 ~~aa~aL~~~~~~~~-~~----~~~-L~~ll~D~d~~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 760 IAVAKGLATLGAGGA-PA----GDA-VRALTGDPDPLVRAAALAALAELGC 804 (897)
T ss_pred HHHHHHHHHhccccc-hh----HHH-HHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 777777777754311 11 111 2222 22366677777777766644
No 44
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=77.95 E-value=14 Score=36.32 Aligned_cols=186 Identities=20% Similarity=0.146 Sum_probs=107.3
Q ss_pred hcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 012499 247 IEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEP 326 (462)
Q Consensus 247 ~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~ 326 (462)
...+|+. +-+-=+||++--++-+-.-..+-...... ....+...+.....+.....++.++++++++..++....
T Consensus 71 ~~~~Wp~--~~~fP~lDLlRl~~l~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 71 ILLSWPP--ESRFPALDLLRLAALHPPASDLLASEDSG---IADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHCCS-C--CC-HHHHHHHHHHCCCHCHHHHHHSTTTH----HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHhCCC--ccchhHHhHHHHHHhCccHHHHHhccccc---hHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 3455543 34556777777666544443211111000 001222222233344677788999999999999999888
Q ss_pred ccCCCch-HHHHHHHHhcCCc---HHHHHHHHHHHHHHhhccCHHHHHHHhcchh---HHHHHHHhhcCCCCChHHHHHH
Q 012499 327 FLLPFVP-QIHKRLVDLMSLP---AFDAQAAAVGALYNLAEVNVDCRLKLASERW---AIDRLLRVIKTPHPVPEVCRKA 399 (462)
Q Consensus 327 ~ll~~~~-~i~~rlv~lL~l~---D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~---~V~~LV~ll~~~h~~~em~rrA 399 (462)
.+..... .+++.+..+..-. +..++.++--++||||-.-..... ...+ .+.-++..+...-.++|..-|+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~---~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS---DEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS----CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 8887776 6888877777654 788999999999999874211111 2222 2333344332232368888888
Q ss_pred HHHHHHhhcCCCchhhHHh---hHHHHHHHH-h-cchhhHHHHHHH
Q 012499 400 AMILESLVSEPQNRVLLLA---YENAFAEIL-F-SDGRYSDTFARI 440 (462)
Q Consensus 400 A~~L~~la~~p~nr~~ll~---~E~~l~~i~-~-sD~~~~~~~~~i 440 (462)
-.+|=+|...+........ ....+...+ . .++++.++.+.|
T Consensus 223 LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 223 LVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 8888888876655444432 333333322 2 366666666543
No 45
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.74 E-value=21 Score=41.33 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHH
Q 012499 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI 335 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i 335 (462)
..+.+=|+||+|++..-... .+|.=+-.-+.|.||.....+.+++++-+++ +..+.++.
T Consensus 372 ~vk~lKleiLs~La~esni~---------------~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~------~~sv~~tC 430 (968)
T KOG1060|consen 372 QVKILKLEILSNLANESNIS---------------EILRELQTYIKSSDRSFAAAAVKAIGRCASR------IGSVTDTC 430 (968)
T ss_pred HHHHHHHHHHHHHhhhccHH---------------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHh------hCchhhHH
Confidence 57788888888888643332 2233333345799999999999999997654 44556678
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012499 336 HKRLVDLMSLPAFDAQAAAVGALYNLAEV 364 (462)
Q Consensus 336 ~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~ 364 (462)
..-++.+|.-+|.-++..++..+--|.+.
T Consensus 431 L~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 431 LNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 88889999888775555555555554443
No 46
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=77.68 E-value=15 Score=38.81 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhh
Q 012499 307 WHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVI 386 (462)
Q Consensus 307 ~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll 386 (462)
....||....++...+.+...+ +..+.+.+|.....+|+-++-+|+|.|+.++=.+.+. ...-+.+.-|++.+
T Consensus 84 ER~QALkliR~~l~~~~~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l----v~~~gG~~~L~~~l 156 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL----VAECGGIRVLLRAL 156 (371)
T ss_pred HHHHHHHHHHHHHHhcCCcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH----HHHcCCHHHHHHHH
Confidence 3345666666665554432222 3337778888888899999999999999998876654 33445677887776
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCchhhHHh-hHHHHHHHHhcch
Q 012499 387 KTPHPVPEVCRKAAMILESLVSEPQNRVLLLA-YENAFAEILFSDG 431 (462)
Q Consensus 387 ~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~-~E~~l~~i~~sD~ 431 (462)
..| ..++.--...+++++--.|..|.++.+ ++-..+--.++|.
T Consensus 157 ~d~--~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~ 200 (371)
T PF14664_consen 157 IDG--SFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDF 200 (371)
T ss_pred Hhc--cHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhh
Confidence 654 334566678899999999999999977 4433333335555
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=76.93 E-value=41 Score=31.95 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHH
Q 012499 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI 335 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i 335 (462)
.+...++.+++.++..+.-. +. .--..++..|...+.+..+...-.|.++|..++.+-. +.+.+
T Consensus 68 ~v~~~A~~~l~~l~~~l~~~-~~--------~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-------~~~~~ 131 (228)
T PF12348_consen 68 KVSKTACQLLSDLARQLGSH-FE--------PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-------YSPKI 131 (228)
T ss_dssp -HHHHHHHHHHHHHHHHGGG-GH--------HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--------H--HH
T ss_pred HHHHHHHHHHHHHHHHHhHh-HH--------HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-------cHHHH
Confidence 58889999999998765543 20 1124566777787778888888999999999887432 22445
Q ss_pred -HHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh---cchhHHHHHHHhhcCCCCChH
Q 012499 336 -HKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA---SERWAIDRLLRVIKTPHPVPE 394 (462)
Q Consensus 336 -~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia---~~~~~V~~LV~ll~~~h~~~e 394 (462)
...+...+..+...++..|+++|+.+..--......+. ..+..+..++.+++++ ++|
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~ 192 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPE 192 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---HH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CHH
Confidence 66667778889999999999999999876431111121 1255677777888887 454
No 48
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=75.65 E-value=18 Score=34.79 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=57.7
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH
Q 012499 291 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL 370 (462)
Q Consensus 291 ~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~ 370 (462)
.++-+...+|...+-.....|.+....|... ++.+.|++++||++.-+-+-|..+|.+....+|.+|-+|...++.++.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3445555555443333333344444444444 788899999999999999999999999999999999999666555554
Q ss_pred HHh
Q 012499 371 KLA 373 (462)
Q Consensus 371 ~ia 373 (462)
++.
T Consensus 117 aLv 119 (183)
T PF10274_consen 117 ALV 119 (183)
T ss_pred HHH
Confidence 443
No 49
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.57 E-value=19 Score=40.98 Aligned_cols=139 Identities=15% Similarity=0.174 Sum_probs=86.1
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCC---ccccCCCchHHHHHHHHhcCCcHHHH-----------------
Q 012499 291 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDN---EPFLLPFVPQIHKRLVDLMSLPAFDA----------------- 350 (462)
Q Consensus 291 ~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~N---e~~ll~~~~~i~~rlv~lL~l~D~~L----------------- 350 (462)
-++..++.+|.|+|.-..-.|+.+|.|+|.-.+- .+...+.+.-++.++.++...+...+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 4678999999999999999999999999965321 01111222224555555544433333
Q ss_pred -----HHHHHHHHHHhhcc-C----HHHHHHHh-----cchhHHHHHHHhh-----cCCCCChHHHHHHHHHHHHhhcCC
Q 012499 351 -----QAAAVGALYNLAEV-N----VDCRLKLA-----SERWAIDRLLRVI-----KTPHPVPEVCRKAAMILESLVSEP 410 (462)
Q Consensus 351 -----~~~aLe~LY~Ls~~-~----~~~~~~ia-----~~~~~V~~LV~ll-----~~~h~~~em~rrAA~~L~~la~~p 410 (462)
++--||.||+|+.= + -..|+.+. +..+.+.||=+.+ ....++.++.-.|-...+++|..|
T Consensus 208 al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 34556677777742 1 22222221 1122222222222 112346778889999999999999
Q ss_pred CchhhHHhhHHHHHHHHhc
Q 012499 411 QNRVLLLAYENAFAEILFS 429 (462)
Q Consensus 411 ~nr~~ll~~E~~l~~i~~s 429 (462)
-.+..+.||=.+|.-+.++
T Consensus 288 i~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 288 ICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred CcHHHHHHHHHHHHHHHHc
Confidence 9999999999888776654
No 50
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.66 E-value=25 Score=41.97 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=88.1
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH
Q 012499 291 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL 370 (462)
Q Consensus 291 ~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~ 370 (462)
.++..+..+|.|.+-...-+||-+|+-++ ++=.+.+.+.+|+|+.-++++|..|+..++-+|+.++-|+|.= ..-
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~--EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~std---l~p 422 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIA--EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTD---LQP 422 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh---hcH
Confidence 56888899999999888899999998755 5556788888999999999999999999999999999998872 222
Q ss_pred HHh--cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012499 371 KLA--SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 409 (462)
Q Consensus 371 ~ia--~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~ 409 (462)
.+. ++...+.-|+..+.+.. ++.+..-||..|.+++.+
T Consensus 423 ~iqk~~~e~l~~aL~~~ld~~~-~~rV~ahAa~al~nf~E~ 462 (1075)
T KOG2171|consen 423 EIQKKHHERLPPALIALLDSTQ-NVRVQAHAAAALVNFSEE 462 (1075)
T ss_pred HHHHHHHHhccHHHHHHhcccC-chHHHHHHHHHHHHHHHh
Confidence 232 33445667777776552 567778888888877654
No 51
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=68.65 E-value=15 Score=37.00 Aligned_cols=118 Identities=19% Similarity=0.168 Sum_probs=76.6
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHhhcCC-----CCccccCCCchHH-----HHHHHHhc--CCcHHHHHHHHHHHHH
Q 012499 292 AVEAIMGILGSPFKAWHCAAAELLGRLIINP-----DNEPFLLPFVPQI-----HKRLVDLM--SLPAFDAQAAAVGALY 359 (462)
Q Consensus 292 ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~-----~Ne~~ll~~~~~i-----~~rlv~lL--~l~D~~L~~~aLe~LY 359 (462)
+||+-+.||+|..-..-+.|+++|.++-..- ++.+.+....|+. +.-+..++ ++.-....+.|+++|-
T Consensus 8 lFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~ 87 (262)
T PF14225_consen 8 LFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLS 87 (262)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHH
Confidence 6899999999999999999999999986553 2344455444432 33444444 4555678899999999
Q ss_pred HhhccCHHHHHHHhc-chhHHHHHHHhh-----cCCCCC----hHHHHHHHHHHHHhhcCCC
Q 012499 360 NLAEVNVDCRLKLAS-ERWAIDRLLRVI-----KTPHPV----PEVCRKAAMILESLVSEPQ 411 (462)
Q Consensus 360 ~Ls~~~~~~~~~ia~-~~~~V~~LV~ll-----~~~h~~----~em~rrAA~~L~~la~~p~ 411 (462)
.|+....+. -|-. +.+..-.+++++ ....++ .+.++..|..|..+++.+.
T Consensus 88 ~L~~~~~~~--lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~ 147 (262)
T PF14225_consen 88 RLTPLPDDP--LIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG 147 (262)
T ss_pred HHhcCCCcc--ccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC
Confidence 999974332 1111 123333333332 223333 2578889999999996543
No 52
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=67.22 E-value=67 Score=29.99 Aligned_cols=93 Identities=24% Similarity=0.198 Sum_probs=60.7
Q ss_pred HHHHhhhCCC-CHHHHHHHHHHHHHhhcCCCCccccCCCc-h------HHHHHHHHhcCC-c-------------HHHHH
Q 012499 294 EAIMGILGSP-FKAWHCAAAELLGRLIINPDNEPFLLPFV-P------QIHKRLVDLMSL-P-------------AFDAQ 351 (462)
Q Consensus 294 ~~l~~~L~S~-Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~-~------~i~~rlv~lL~l-~-------------D~~L~ 351 (462)
+.|..+|..+ --..++.-|++|+- ++-++..--|.+.. + .+++|+.++|.- | ...++
T Consensus 33 dFvL~mLs~~Qp~~Di~~mL~lL~T-S~lp~S~GpI~~~~~~q~~~e~~iIdrvt~~L~E~P~~d~~~~~~t~~~i~~lR 111 (149)
T PF12331_consen 33 DFVLMMLSPKQPLDDIILMLNLLST-SVLPDSFGPITDDESDQKNVENYIIDRVTNLLSEPPKVDEGWAPYTPAEICTLR 111 (149)
T ss_pred HHHHHHhCccCcHHHHHHHHHHHHh-ccCCCCcCCCCCCcchhhhHHHHHHHHHHHHccCCCCCCCCCCCCCHHHHHHHH
Confidence 3445566544 44567788888876 44444433343321 1 289999999874 2 12566
Q ss_pred HHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcC
Q 012499 352 AAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKT 388 (462)
Q Consensus 352 ~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~ 388 (462)
..+|.+|-.++.-.- .+..||.++-+|.+||+.+.+
T Consensus 112 l~aL~~L~~fa~s~~-G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 112 LEALRTLTSFAFSPF-GALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHcCcH-HHHHHHhCchhHHHHHHHHHc
Confidence 666666666666444 567899999999999998865
No 53
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.09 E-value=1.2e+02 Score=35.37 Aligned_cols=137 Identities=19% Similarity=0.165 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHHhhcC--CCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHH
Q 012499 302 SPFKAWHCAAAELLGRLIIN--PDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAI 379 (462)
Q Consensus 302 S~Dr~~ii~aLE~L~kL~~~--~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V 379 (462)
|+|...+.+|..++..|... ++|+.+| ++.|++.+=..+.-.+++.++++|--|+.-+-+.|.+ ++
T Consensus 271 S~~p~alk~Aa~~~i~l~~kesdnnvklI------vldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~K------tl 338 (948)
T KOG1058|consen 271 SNDPTALKAAASTYIDLLVKESDNNVKLI------VLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSK------TL 338 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhccCcchhhh------hHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHH------HH
Confidence 67777788888888888776 4666665 5667777666666678888888888888877666643 23
Q ss_pred HHHHHhhcCCCCChH-H---H-HHHHHHHHHhhcCCCchhhHHhhHHHHHHHHhcchhhHHHHHHHHHHHhcCCCCcccc
Q 012499 380 DRLLRVIKTPHPVPE-V---C-RKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVAS 454 (462)
Q Consensus 380 ~~LV~ll~~~h~~~e-m---~-rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~~sD~~~~~~~~~iL~~l~~~~~~~~~~ 454 (462)
+--..|+++. |.| | . |+-+.|=-. .+.+|..+=...=+.+...|+.=|.++..+-.+|.+.=+..|.++++
T Consensus 339 di~ldLvssr--Nvediv~~Lkke~~kT~~~--e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas 414 (948)
T KOG1058|consen 339 DIALDLVSSR--NVEDIVQFLKKEVMKTHNE--ESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAAS 414 (948)
T ss_pred HHHHhhhhhc--cHHHHHHHHHHHHHhcccc--ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHH
Confidence 3333333322 221 1 1 222222222 34455444333334445555555666666666666666666655443
No 54
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.58 E-value=33 Score=39.74 Aligned_cols=171 Identities=22% Similarity=0.191 Sum_probs=115.2
Q ss_pred ChHHHHHHHHHHHHhhcCcccccc---ccC-CcchhhhhcH-----HHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCC
Q 012499 253 EDEELVTNALETIVNLAPLLDLRI---FSS-SKQSYIKITE-----KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPD 323 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~---~~~-~~~~~i~i~~-----~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~ 323 (462)
.|+|+..++|||+-++..+=|-.. -+. ++.-..-+++ .-..+.+++.+.-.|=...+.+++.++.|..+-.
T Consensus 75 ~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 75 MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 678999999999999987664210 000 0000001111 1223445555556666677889999998877754
Q ss_pred Cc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChH---HHHHH
Q 012499 324 NE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPE---VCRKA 399 (462)
Q Consensus 324 Ne-~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~e---m~rrA 399 (462)
-+ .-.+-..|.=++++|.+|...-..++..++=+|..|+.-+... .+|...+.+-.+|+++++.+.. .+ |.--+
T Consensus 155 ~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I-QKlVAFENaFerLfsIIeeEGg-~dGgIVveDC 232 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI-QKLVAFENAFERLFSIIEEEGG-LDGGIVVEDC 232 (970)
T ss_pred HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH-HHHHHHHHHHHHHHHHHHhcCC-CCCcchHHHH
Confidence 32 2333445677899999999888899999999999999887776 6677778899999999977632 22 44556
Q ss_pred HHHHHHhhc-CCCchhhH--HhhHHHHHH
Q 012499 400 AMILESLVS-EPQNRVLL--LAYENAFAE 425 (462)
Q Consensus 400 A~~L~~la~-~p~nr~~l--l~~E~~l~~ 425 (462)
-..|.+|=| +-.|-.+| -.|=+||.-
T Consensus 233 L~ll~NLLK~N~SNQ~~FrE~~~i~rL~k 261 (970)
T KOG0946|consen 233 LILLNNLLKNNISNQNFFREGSYIPRLLK 261 (970)
T ss_pred HHHHHHHHhhCcchhhHHhccccHHHHHh
Confidence 666777665 44777777 456677773
No 55
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=66.15 E-value=11 Score=25.48 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=28.5
Q ss_pred HhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 012499 372 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS 408 (462)
Q Consensus 372 ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~ 408 (462)
...+.+.|..|+.++..+ ++++.+-|+.+|.+|+.
T Consensus 7 ~i~~~g~i~~L~~ll~~~--~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 7 AVVDAGGLPALVELLKSE--DEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHcC
Confidence 344567999999999844 68889999999999874
No 56
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.03 E-value=30 Score=36.15 Aligned_cols=104 Identities=22% Similarity=0.229 Sum_probs=80.8
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhh
Q 012499 336 HKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVL 415 (462)
Q Consensus 336 ~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ 415 (462)
...+|.+|..+.+.++.+|++-|..||.-+ ...........+.-|..|+....| .+-||.+|-+++..++=|-.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHH
Confidence 457899999999999999999999999873 223445667778888888877643 55699999999999988888
Q ss_pred HHhhHHHHHHHHhc---ch--hhHHHHHHHHHHHhcCC
Q 012499 416 LLAYENAFAEILFS---DG--RYSDTFARILYELTSRP 448 (462)
Q Consensus 416 ll~~E~~l~~i~~s---D~--~~~~~~~~iL~~l~~~~ 448 (462)
+++- |+.+.|. |+ ..++.++-.|--|++-.
T Consensus 79 ll~~---~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~ 113 (353)
T KOG2973|consen 79 LLQD---LLKVLMDMLTDPQSPLADLICMLLSNLSRDD 113 (353)
T ss_pred HHHH---HHHHHHHHhcCcccchHHHHHHHHHHhccCc
Confidence 8877 6676664 54 67788888887777644
No 57
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.11 E-value=22 Score=40.72 Aligned_cols=64 Identities=19% Similarity=0.342 Sum_probs=48.0
Q ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCC--hHHHHHHHHHHHHhh
Q 012499 336 HKRLVDLMS-LPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPV--PEVCRKAAMILESLV 407 (462)
Q Consensus 336 ~~rlv~lL~-l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~--~em~rrAA~~L~~la 407 (462)
.+.|+..|- -+|+-++--++|+||.++..+ +.+-.|+.|+..|++..+. .||.-|+|..=+--|
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~--------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVS--------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhchh--------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 455677775 799999999999999988753 3445788999999887653 468878887654443
No 58
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=62.57 E-value=76 Score=34.80 Aligned_cols=160 Identities=18% Similarity=0.096 Sum_probs=113.6
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHhhc-CCCCccccCCCch-HHHHHHHHhcCCcHH----HHHHHHHHHHHHhhccC
Q 012499 292 AVEAIMGILGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVP-QIHKRLVDLMSLPAF----DAQAAAVGALYNLAEVN 365 (462)
Q Consensus 292 ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~-~~~Ne~~ll~~~~-~i~~rlv~lL~l~D~----~L~~~aLe~LY~Ls~~~ 365 (462)
+++.+.+.+.|+|-...+.+.++|+++|- |+.|.+.+.+.-. |+.=++.+-++..|. +.....-..|.+|+--+
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~ 167 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDS 167 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCc
Confidence 34555566678889999999999999996 4677777776543 454455555565554 77777888899998877
Q ss_pred HHHHHHHhcchhHHHHHHHhhcCCCCCh---HHHHHHHHHHHHhhcC---CCchhhHHhhHHHHHHHHhcchhhHHHHHH
Q 012499 366 VDCRLKLASERWAIDRLLRVIKTPHPVP---EVCRKAAMILESLVSE---PQNRVLLLAYENAFAEILFSDGRYSDTFAR 439 (462)
Q Consensus 366 ~~~~~~ia~~~~~V~~LV~ll~~~h~~~---em~rrAA~~L~~la~~---p~nr~~ll~~E~~l~~i~~sD~~~~~~~~~ 439 (462)
..-+-+++ .-|.+..|+..+--+-.|. ||+.-+-.-|+++.++ |.|..-=+.+|--.+.-++..+-....+=.
T Consensus 168 ~~l~aq~~-~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 168 RELRAQVA-DAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred HHHHHHHH-hcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence 77654443 4567888988886664443 6888777888888877 778877788877777777777777776666
Q ss_pred HHHHHhcCCCCcc
Q 012499 440 ILYELTSRPNNKV 452 (462)
Q Consensus 440 iL~~l~~~~~~~~ 452 (462)
||-...-+.--|+
T Consensus 247 ila~~aend~Vkl 259 (604)
T KOG4500|consen 247 ILAKAAENDLVKL 259 (604)
T ss_pred HHHHHhcCcceee
Confidence 6666555544443
No 59
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=61.80 E-value=14 Score=25.84 Aligned_cols=29 Identities=38% Similarity=0.289 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~ 363 (462)
.+..++++|..+|.+++..++-+|.+|+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 67889999999999999999999999974
No 60
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.24 E-value=71 Score=34.00 Aligned_cols=138 Identities=17% Similarity=0.157 Sum_probs=83.4
Q ss_pred HHHHhhhCC-C---CHHHHHHHHHHHHHhhcCCCCccccCC--CchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH
Q 012499 294 EAIMGILGS-P---FKAWHCAAAELLGRLIINPDNEPFLLP--FVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD 367 (462)
Q Consensus 294 ~~l~~~L~S-~---Dr~~ii~aLE~L~kL~~~~~Ne~~ll~--~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~ 367 (462)
.++++|+.+ + .|.....|+.+|.+|+.+++|.+.|.+ ..|.++.-+.+.+ .|+.+++.++-+++-|+--..+
T Consensus 286 ~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~pd 363 (461)
T KOG4199|consen 286 DTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DDPLVIQEVMAIISILCLRSPD 363 (461)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CChHHHHHHHHHHHHHHhcCcc
Confidence 445566643 3 477788999999999999999998874 3444544444443 3455556666666655544333
Q ss_pred HHHHHhcchhHHHHHHHhhcCCCCChH-HHHHHHHHHHHhhcCC-CchhhHHhhH-HHHHHHHhcchhhHH
Q 012499 368 CRLKLASERWAIDRLLRVIKTPHPVPE-VCRKAAMILESLVSEP-QNRVLLLAYE-NAFAEILFSDGRYSD 435 (462)
Q Consensus 368 ~~~~ia~~~~~V~~LV~ll~~~h~~~e-m~rrAA~~L~~la~~p-~nr~~ll~~E-~~l~~i~~sD~~~~~ 435 (462)
-.. ++-.-|.-+.-|.-++ .||..- |=|-|+..+.||+.+. +||..++.+= ..|..-|++..+.+.
T Consensus 364 hsa-~~ie~G~a~~avqAmk-ahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce 432 (461)
T KOG4199|consen 364 HSA-KAIEAGAADLAVQAMK-AHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCE 432 (461)
T ss_pred hHH-HHHhcchHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHH
Confidence 322 2222333222232222 266443 7799999999998776 6777776653 345556676555444
No 61
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=59.60 E-value=1.4e+02 Score=31.82 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=106.0
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCC--ch-----------------HHHHHHHHhc-------
Q 012499 290 KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF--VP-----------------QIHKRLVDLM------- 343 (462)
Q Consensus 290 ~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~--~~-----------------~i~~rlv~lL------- 343 (462)
.-+|.-|..|+..+|.+..-+|.|.+.+++..++-...|-+. .+ .+|+-|+.+-
T Consensus 127 aeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesa 206 (524)
T KOG4413|consen 127 AEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESA 206 (524)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHH
Confidence 346788888999999999999999999999887665544321 10 0333333322
Q ss_pred -----------------CCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCC-ChHHHHHHHHHHHH
Q 012499 344 -----------------SLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHP-VPEVCRKAAMILES 405 (462)
Q Consensus 344 -----------------~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~-~~em~rrAA~~L~~ 405 (462)
+..|.-.+..|+|..|.|+...- .+...-|.+.|+++.+.++-... +.|-.|......--
T Consensus 207 neckkSGLldlLeaElkGteDtLVianciElvteLaeteH--greflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 207 NECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH--GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred hHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh--hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 33566678889999999988532 23456688899999999855422 23322322222111
Q ss_pred h--------hcCCCchhhHHhhHHHHHHHHhcchhhHHHHHHHHHHHhcCCCCc
Q 012499 406 L--------VSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNK 451 (462)
Q Consensus 406 l--------a~~p~nr~~ll~~E~~l~~i~~sD~~~~~~~~~iL~~l~~~~~~~ 451 (462)
+ +-+.-...+....|.-|--|-|.|+.....--+-|-.|.|++..|
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa 338 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA 338 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh
Confidence 1 122234566677788888888999999988889999988877543
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=58.95 E-value=45 Score=40.17 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhcCcc-cc-ccccCCcchhhhhcHHHHHHHHHhhhC-CCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 256 ELVTNALETIVNLAPLL-DL-RIFSSSKQSYIKITEKRAVEAIMGILG-SPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l-~L-~~~~~~~~~~i~i~~~~ll~~l~~~L~-S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
+-.+.+|..|.|+-..- || +.|.+.+-+ + ..|..+...|. ..+-..++.||+.+..+..+..=+..+...-
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~l---i---g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~ 1813 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILL---I---GNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCN 1813 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhh---h---cccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhh
Confidence 56788999999976543 34 234332211 1 12344444443 3455678999999999887654333222211
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhh-cCCCCChHHHHHHHHHHHHhhcCC-
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVI-KTPHPVPEVCRKAAMILESLVSEP- 410 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll-~~~h~~~em~rrAA~~L~~la~~p- 410 (462)
++..+..+|. .....++.+|+.||+|++-++-. +-|..+|.+..+...+ -..|+++ =-.||..|.-|...|
T Consensus 1814 --vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~~~i~--keA~~hg~l~yil~~~c~~~~~Qq--RAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1814 --VLTTLLTLLH-SQPSMRARVLDVLYALSSNGQIG--KEALEHGGLMYILSILCLTNSDQQ--RAQAAELLAKLQADKL 1886 (2235)
T ss_pred --HHHHHHHHHh-cChHHHHHHHHHHHHHhcCcHHH--HHHHhcCchhhhhHHHhccCcHHH--HHHHHHHHHHhhhccc
Confidence 4444555543 55678999999999999987765 3455566666665443 4455433 222444444554443
Q ss_pred ---CchhhHHhhHHHHHHHHhcchh
Q 012499 411 ---QNRVLLLAYENAFAEILFSDGR 432 (462)
Q Consensus 411 ---~nr~~ll~~E~~l~~i~~sD~~ 432 (462)
-=+--++.|=...+.=+|.|++
T Consensus 1887 ~GPrV~ITL~kFLP~~f~d~~RD~P 1911 (2235)
T KOG1789|consen 1887 TGPRVTITLIKFLPEIFADSLRDSP 1911 (2235)
T ss_pred cCCceeeehHHhchHHHHHHHhcCH
Confidence 2333345555554444455554
No 63
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=58.83 E-value=16 Score=24.31 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~ 363 (462)
++..+++++..++.+.+.++..+|.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999876
No 64
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=57.48 E-value=1.6e+02 Score=34.25 Aligned_cols=153 Identities=20% Similarity=0.129 Sum_probs=107.7
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
.|.|+|...=--+.+.|. -.|.. ..+...++..=+.+++-.....||++|+.|=+.+ ..
T Consensus 67 rd~ElKrL~ylYl~~yak---------~~P~~----~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~e--------l~ 125 (757)
T COG5096 67 RDVELKRLLYLYLERYAK---------LKPEL----ALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKE--------LL 125 (757)
T ss_pred cCHHHHHHHHHHHHHHhc---------cCHHH----HHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHH--------HH
Confidence 455777766554554443 22211 1234456666677888888999999999875433 44
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC-
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ- 411 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~- 411 (462)
++++.-+.+++..+....+-.+.-++..+=+++.+- .+..|.+++|..++.+. +|.+++-|=.+|..+ +|+
T Consensus 126 ~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l----~~~~g~~~~l~~l~~D~--dP~Vi~nAl~sl~~i--~~e~ 197 (757)
T COG5096 126 GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL----YHELGLIDILKELVADS--DPIVIANALASLAEI--DPEL 197 (757)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh----hhcccHHHHHHHHhhCC--CchHHHHHHHHHHHh--chhh
Confidence 668888999999999999988888888888777654 46678899999999888 566666555555554 455
Q ss_pred chhhHHhhHHHHHHHHhcchhhH
Q 012499 412 NRVLLLAYENAFAEILFSDGRYS 434 (462)
Q Consensus 412 nr~~ll~~E~~l~~i~~sD~~~~ 434 (462)
-++++..+..++-++-+.+..++
T Consensus 198 a~~~~~~~~~~i~~l~~~~~~~~ 220 (757)
T COG5096 198 AHGYSLEVILRIPQLDLLSLSVS 220 (757)
T ss_pred hhhHHHHHHHHhhhccchhhhhh
Confidence 78888888888888665555543
No 65
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.26 E-value=72 Score=33.41 Aligned_cols=147 Identities=19% Similarity=0.124 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHH
Q 012499 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI 335 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i 335 (462)
.++..|.+.+.++++. .++.+... +..+++.|++++.-.+- ..-|..+|.+++.++.=...++.- +
T Consensus 18 ~v~~~AV~~l~~lt~~-~~~~~~~~--------~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~---~ 83 (353)
T KOG2973|consen 18 PVRKAAVEHLLGLTGR-GLQSLSKY--------SEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD---L 83 (353)
T ss_pred HHHHHHHHHHhhcccc-chhhhccc--------hhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH---H
Confidence 4899999999999887 55544221 23556777777654443 566888999999887543333332 5
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcch----hHHHHHH-HhhcCCCCChH-HHHHHHHHHHHhhcC
Q 012499 336 HKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASER----WAIDRLL-RVIKTPHPVPE-VCRKAAMILESLVSE 409 (462)
Q Consensus 336 ~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~----~~V~~LV-~ll~~~h~~~e-m~rrAA~~L~~la~~ 409 (462)
+++++..+.-+.-.+-+..--+|.|||+....++....... ..+-.|+ ++...+- |.. =.-.-|-.+.+|++.
T Consensus 84 ~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~-n~~a~f~ylA~vf~nls~~ 162 (353)
T KOG2973|consen 84 LKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSY-NAYAEFHYLAPVFANLSQF 162 (353)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccc-ccccchhHHHHHHHHHhhh
Confidence 66666666655455556666678999998777765554433 3344444 4443331 210 134568889999999
Q ss_pred CCchhhHH
Q 012499 410 PQNRVLLL 417 (462)
Q Consensus 410 p~nr~~ll 417 (462)
+.-|-+|+
T Consensus 163 ~~gR~l~~ 170 (353)
T KOG2973|consen 163 EAGRKLLL 170 (353)
T ss_pred hhhhhHhc
Confidence 99998884
No 66
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=57.20 E-value=16 Score=24.79 Aligned_cols=29 Identities=28% Similarity=0.181 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~ 363 (462)
.++.++.+|..+|.+++..++.+|++++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 46678888888899999999999999873
No 67
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=55.99 E-value=85 Score=33.33 Aligned_cols=187 Identities=19% Similarity=0.158 Sum_probs=109.5
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
..+|+.=+|..|+-+.+-- ..+++..|. ..-.=++|.-++-+++++...++-.=-=+.| ....-+.+-
T Consensus 192 leLIieifSiSpesaneck-kSGLldlLe--aElkGteDtLVianciElvteLaeteHgref---------laQeglIdl 259 (524)
T KOG4413|consen 192 LELIIEIFSISPESANECK-KSGLLDLLE--AELKGTEDTLVIANCIELVTELAETEHGREF---------LAQEGLIDL 259 (524)
T ss_pred HHHHHHHHhcCHHHHhHhh-hhhHHHHHH--HHhcCCcceeehhhHHHHHHHHHHHhhhhhh---------cchhhHHHH
Confidence 3778888888888766643 355565443 2222235555677777777666532111111 111123344
Q ss_pred HHhhhC--CCCHHHHHHHHHHHHHhhcCCC----CccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012499 296 IMGILG--SPFKAWHCAAAELLGRLIINPD----NEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 369 (462)
Q Consensus 296 l~~~L~--S~Dr~~ii~aLE~L~kL~~~~~----Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~ 369 (462)
|+..+. ++|.+.-.++|-..+|+..+++ -++.+++..+..++...+.+..+|.+.++++++.|=++-+--+.+-
T Consensus 260 icnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGad 339 (524)
T KOG4413|consen 260 ICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGAD 339 (524)
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhH
Confidence 444443 5666666777777777766654 3444555555567777888889999999999999988876544443
Q ss_pred HHHhcchhHHHHHHHhhcC--CCCChHHHHHHHHHHHHhhcCCCchh
Q 012499 370 LKLASERWAIDRLLRVIKT--PHPVPEVCRKAAMILESLVSEPQNRV 414 (462)
Q Consensus 370 ~~ia~~~~~V~~LV~ll~~--~h~~~em~rrAA~~L~~la~~p~nr~ 414 (462)
..+..-+..-.||+.=.-+ .|..+|..-+|-..+..+-+-|-|+.
T Consensus 340 lllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqi 386 (524)
T KOG4413|consen 340 LLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQI 386 (524)
T ss_pred HHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhc
Confidence 4444556577777644422 35445544444444444445555543
No 68
>PF05536 Neurochondrin: Neurochondrin
Probab=55.91 E-value=1.8e+02 Score=32.43 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCccccCCCchHH---HHHHHHhcCCcHH-HHHHHHHHHHHHhhccCHHHHHHHhcchhH
Q 012499 303 PFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI---HKRLVDLMSLPAF-DAQAAAVGALYNLAEVNVDCRLKLASERWA 378 (462)
Q Consensus 303 ~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i---~~rlv~lL~l~D~-~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~ 378 (462)
+....+-.|+-+|..+|.-|+- ...|++ +..+++.+.-.+. ++.+-|++||+.+++..+.. ..+.. .+.
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~-----a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~-~aLl~-~g~ 141 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPEL-----ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGA-KALLE-SGA 141 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhh-----hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhH-HHHHh-cCC
Confidence 4577889999999999994431 223443 4456777776666 99999999999999554433 33333 578
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 012499 379 IDRLLRVIKTPHPVPEVCRKAAMILESLVS 408 (462)
Q Consensus 379 V~~LV~ll~~~h~~~em~rrAA~~L~~la~ 408 (462)
|..|+..+..+-.+ +-.|..+|.++..
T Consensus 142 v~~L~ei~~~~~~~---~E~Al~lL~~Lls 168 (543)
T PF05536_consen 142 VPALCEIIPNQSFQ---MEIALNLLLNLLS 168 (543)
T ss_pred HHHHHHHHHhCcch---HHHHHHHHHHHHH
Confidence 99999888763112 3335555555443
No 69
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.42 E-value=63 Score=37.04 Aligned_cols=140 Identities=21% Similarity=0.230 Sum_probs=77.4
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcC----------------CcHHHHHHHHHHHHHHhh
Q 012499 299 ILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS----------------LPAFDAQAAAVGALYNLA 362 (462)
Q Consensus 299 ~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~----------------l~D~~L~~~aLe~LY~Ls 362 (462)
.|..+|+. +.-=||||+.+++.- ..-++|+.+.+|+|++++|. .+|-+.+..+||++.-|+
T Consensus 571 ~lsd~DKd-LfPLLEClSsia~AL--~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLa 647 (885)
T KOG2023|consen 571 LLSDSDKD-LFPLLECLSSIASAL--GVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLA 647 (885)
T ss_pred hcCcccch-HHHHHHHHHHHHHHH--hccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHH
Confidence 34444432 333466666665543 24566777789999999887 145678889999999999
Q ss_pred cc-CHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHH---------------------hhcCCCchhhHHhhH
Q 012499 363 EV-NVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILES---------------------LVSEPQNRVLLLAYE 420 (462)
Q Consensus 363 ~~-~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~---------------------la~~p~nr~~ll~~E 420 (462)
+. |.-.-..+|... ..+.|..-+.+. .||+=..|=..|=. -.-.|+|.+.-----
T Consensus 648 egLg~~ie~Lva~sn-l~~lll~C~~D~--~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~ 724 (885)
T KOG2023|consen 648 EGLGSHIEPLVAQSN-LLDLLLQCLQDE--VPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAI 724 (885)
T ss_pred HHhhhchHHHhhhcc-HHHHHHHHhccC--ChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHH
Confidence 95 444433344443 444443333333 23321111111112 223355555443334
Q ss_pred HHHHHHHhc-chhhHHHHHHHHHHH
Q 012499 421 NAFAEILFS-DGRYSDTFARILYEL 444 (462)
Q Consensus 421 ~~l~~i~~s-D~~~~~~~~~iL~~l 444 (462)
-.+-+|++. +...-..+.+||+.|
T Consensus 725 WAiGeia~k~g~~~~~~v~~vl~~L 749 (885)
T KOG2023|consen 725 WAIGEIALKMGLKMKQYVSPVLEDL 749 (885)
T ss_pred HHHHHHHHHhchhhhhHHHHHHHHH
Confidence 455566664 666667777777665
No 70
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=54.25 E-value=31 Score=29.52 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=52.9
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 012499 291 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYN 360 (462)
Q Consensus 291 ~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~ 360 (462)
.++.-|+.++..+|--..-.|.|+|..++..-.. -++++.+++|.-++.++.-+|..++.++ ++|=+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 4567778888888888889999999999876543 3455778899999999999999888776 55443
No 71
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=53.58 E-value=14 Score=36.66 Aligned_cols=24 Identities=50% Similarity=0.761 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 012499 23 RGRPFGSTSGSSGGSGSAADSAAP 46 (462)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (462)
-|||||..++++-..+.||.-.+|
T Consensus 177 GGRPfG~gG~~~~~~~gaas~~~p 200 (260)
T PF05268_consen 177 GGRPFGAGGSGSNMSGGAASLTAP 200 (260)
T ss_pred CCCccCCCCCcCcCCCccceeccC
Confidence 689999987555444444433333
No 72
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=50.97 E-value=67 Score=23.57 Aligned_cols=54 Identities=20% Similarity=0.077 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHh
Q 012499 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRL 318 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL 318 (462)
.+|+.+.-.|++++....-. ...-...++..+..+|..++......|..+|++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~---------~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPEL---------LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHH---------HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHH---------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47889999999876432221 1111135677778888877778888899998875
No 73
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.96 E-value=46 Score=38.96 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC-CCchhhHHh------h
Q 012499 347 AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE-PQNRVLLLA------Y 419 (462)
Q Consensus 347 D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~-p~nr~~ll~------~ 419 (462)
|+--+.-+|-=|+++-.+|..--...--++-.|..||.|+.++| |+|+|-.|+..|-+|.-+ |..-+..+- +
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~-n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl 259 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH-NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVL 259 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhhccchhheeecccchHHH
Confidence 44333334444455555543333446667888999999999998 899888899888888654 444433333 4
Q ss_pred HHHHHHHHhcc
Q 012499 420 ENAFAEILFSD 430 (462)
Q Consensus 420 E~~l~~i~~sD 430 (462)
-.+|+.|-..|
T Consensus 260 ~~kL~~IeyiD 270 (1051)
T KOG0168|consen 260 LEKLLTIEYID 270 (1051)
T ss_pred HHhhhhhhhhH
Confidence 56777777664
No 74
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=49.32 E-value=3.8e+02 Score=29.15 Aligned_cols=115 Identities=11% Similarity=0.041 Sum_probs=70.9
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCc-HHHHHHHHHHHHHHhhccCHHHHHHH
Q 012499 294 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLP-AFDAQAAAVGALYNLAEVNVDCRLKL 372 (462)
Q Consensus 294 ~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~-D~~L~~~aLe~LY~Ls~~~~~~~~~i 372 (462)
...+..|..+|.+....|..+|++|..... ...-....+.+++-+...|.-+ +...+..|+.||..|.....-- ..+
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~-~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f 181 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGL-AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAF 181 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCc-cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHH
Confidence 333456778999999999999999976432 2111112333555566666544 4688888888888887765433 333
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC
Q 012499 373 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ 411 (462)
Q Consensus 373 a~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~ 411 (462)
-..+ .|..|+.+|...-.+....=.+--.+--|+=+|+
T Consensus 182 ~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~ 219 (429)
T cd00256 182 VLAD-GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH 219 (429)
T ss_pred HHcc-CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH
Confidence 3444 7899999986542223344445555555555554
No 75
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=47.84 E-value=59 Score=30.45 Aligned_cols=120 Identities=15% Similarity=0.052 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH
Q 012499 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 334 (462)
Q Consensus 255 ~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~ 334 (462)
.|-++..+--|+|.| .+.-+|.....--.++....+|..+|--.+--++-.||++|--+.|..+|.+...-
T Consensus 31 ~eakeqv~ANLANFA---------YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~ 101 (173)
T KOG4646|consen 31 IEAKEQVTANLANFA---------YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGL 101 (173)
T ss_pred HHHHHHHHHHHHhhc---------cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCC
Confidence 356776655555554 23333322222234455566778888888888999999999999999988754311
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhh
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVI 386 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll 386 (462)
.-++..|+.|....+-+++-+||.|.-.+-..+..+... ..|+..-++=
T Consensus 102 --plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p-~Vv~~v~r~~ 150 (173)
T KOG4646|consen 102 --PLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP-AVVRTVQRWR 150 (173)
T ss_pred --ceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH-HHHHHHHHHH
Confidence 123455666777777788888888877776665555433 3555554443
No 76
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=47.78 E-value=2.4e+02 Score=32.49 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=95.3
Q ss_pred hhhhhhcCC-CCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFS-FMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLS-f~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
+..++.|-+ ...++-+.| +.+-+...|+. +.+.-+|||+--+..+-..... .+.... .+.++.
T Consensus 529 il~li~~s~~~~~e~~~~l---------~~l~~l~~wp~--~~~fPalDilRl~v~h~~~~s~----~~~~~~-~~~~~~ 592 (745)
T KOG0301|consen 529 ILSLIKNSSHYSSEVLQSL---------LALAILLQWPV--EMMFPALDILRLAVKHHSSNSL----FCDREE-GQNLVG 592 (745)
T ss_pred HHHhhcCCCCccchhHHHH---------HHHHHHhcCCH--HHhhhHHHHHHHHHhccchhhh----hhhhhh-hhHHHH
Confidence 577777766 444444443 11122334443 6788899999877766554421 110000 122444
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHH--HHHHHHHHHhhccCHHHHHHH
Q 012499 295 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQ--AAAVGALYNLAEVNVDCRLKL 372 (462)
Q Consensus 295 ~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~--~~aLe~LY~Ls~~~~~~~~~i 372 (462)
++...+. .+-..++.++|+|+++..++.+..++.....++...+++.=..++..++ .+|+-+=|.+.-+ +-
T Consensus 593 ~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~------~~ 665 (745)
T KOG0301|consen 593 TLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLI------QD 665 (745)
T ss_pred hhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHH------hc
Confidence 5544443 5667889999999999999888877776666666666666666644333 3333333333221 11
Q ss_pred hcchhHHHHHHHhhcCCC-CC--hHHHHHHHHHHHHhhcCCCc
Q 012499 373 ASERWAIDRLLRVIKTPH-PV--PEVCRKAAMILESLVSEPQN 412 (462)
Q Consensus 373 a~~~~~V~~LV~ll~~~h-~~--~em~rrAA~~L~~la~~p~n 412 (462)
-.+-+....|.+.+...- |. .|-+-|+-.+|=+|.-++.+
T Consensus 666 ~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~ 708 (745)
T KOG0301|consen 666 NEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS 708 (745)
T ss_pred ccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH
Confidence 112233444444443331 22 24456666777777776643
No 77
>PTZ00429 beta-adaptin; Provisional
Probab=46.91 E-value=5.3e+02 Score=30.10 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH
Q 012499 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 334 (462)
Q Consensus 255 ~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~ 334 (462)
+.+|-.||-++++|...-. -..+...|.+++...+-.....|.=++.||.....+ .+.. ..
T Consensus 119 p~IRaLALRtLs~Ir~~~i---------------~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe--lv~~--~~ 179 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSV---------------LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ--LFYQ--QD 179 (746)
T ss_pred HHHHHHHHHHHHcCCcHHH---------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc--cccc--cc
Confidence 4567777777776543110 124556677788777777778888888888765442 1110 01
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccC
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVN 365 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~ 365 (462)
+..++.++|..+|.+.+..|+-+|+.+.+.+
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 4556667788888889999999888887654
No 78
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=46.41 E-value=66 Score=30.39 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESL 406 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~l 406 (462)
.+.+|.++...+|..++..+++++-...+.| +++...+|..||+|.+++ ++.|-.+|-..+..+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG------LvnP~~cvp~lIAL~ts~--~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG------LVNPKQCVPTLIALETSP--NPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC------CCChHHHHhHhhhhhCCC--ChHHHHHHHHHHHHH
Confidence 6788888888899999999999998887654 678888999999999885 677777777777766
No 79
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=45.80 E-value=1.4e+02 Score=27.68 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHH-HHHHHh
Q 012499 307 WHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAI-DRLLRV 385 (462)
Q Consensus 307 ~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V-~~LV~l 385 (462)
....++.+++-||....| .+++....+...|..+++.++..|+-+|.+|..-|. ...++.+ ..++..
T Consensus 4 vR~n~i~~l~DL~~r~~~------~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPN------LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHhCcH------HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHHHH
Confidence 345688889999888753 223455666777888999999999999999987432 2333444 777777
Q ss_pred hcCCCCChHHHHHHHHHHHHhhcC
Q 012499 386 IKTPHPVPEVCRKAAMILESLVSE 409 (462)
Q Consensus 386 l~~~h~~~em~rrAA~~L~~la~~ 409 (462)
+.+. ++++-..|...+..+++.
T Consensus 72 l~D~--~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE--NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC--CHHHHHHHHHHHHHHHHh
Confidence 7665 566666666666666665
No 80
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.61 E-value=3.6e+02 Score=28.57 Aligned_cols=148 Identities=20% Similarity=0.074 Sum_probs=94.9
Q ss_pred ccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCH-H
Q 012499 228 DNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFK-A 306 (462)
Q Consensus 228 ~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr-~ 306 (462)
.|+.-+.++-+...++. .... .+.+||..|.++++..+..-.-. + ..+...-.+..|+..+.+++- .
T Consensus 115 DnAndl~~~ggl~~ll~-~l~~---~~~~lR~~Aa~Vigt~~qNNP~~----Q----e~v~E~~~L~~Ll~~ls~~~~~~ 182 (342)
T KOG2160|consen 115 DNANDLISLGGLVPLLG-YLEN---SDAELRELAARVIGTAVQNNPKS----Q----EQVIELGALSKLLKILSSDDPNT 182 (342)
T ss_pred hhHHhHhhccCHHHHHH-HhcC---CcHHHHHHHHHHHHHHHhcCHHH----H----HHHHHcccHHHHHHHHccCCCch
Confidence 78999999988666555 3333 34579999999999887532221 0 012222356777777765542 2
Q ss_pred HHHHHHHHHHHhhcCCCCccccCCCchH-HHHHHHHhcCC--cHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHH
Q 012499 307 WHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSL--PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLL 383 (462)
Q Consensus 307 ~ii~aLE~L~kL~~~~~Ne~~ll~~~~~-i~~rlv~lL~l--~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV 383 (462)
..-.||=+++.|..+ |.+.+..|.+- =|+-+.+.|-. .++.+..-++.++-.|.+-...-+. +++..+....++
T Consensus 183 ~r~kaL~AissLIRn--~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d-~~~~~~f~~~~~ 259 (342)
T KOG2160|consen 183 VRTKALFAISSLIRN--NKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED-IASSLGFQRVLE 259 (342)
T ss_pred HHHHHHHHHHHHHhc--CcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-HHHHhhhhHHHH
Confidence 234555555555443 44444444432 37778888887 4567888888888888887655544 788887888888
Q ss_pred HhhcCCC
Q 012499 384 RVIKTPH 390 (462)
Q Consensus 384 ~ll~~~h 390 (462)
.+++..+
T Consensus 260 ~l~~~l~ 266 (342)
T KOG2160|consen 260 NLISSLD 266 (342)
T ss_pred HHhhccc
Confidence 8887764
No 81
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=43.96 E-value=31 Score=25.39 Aligned_cols=50 Identities=36% Similarity=0.368 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 012499 309 CAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYN 360 (462)
Q Consensus 309 i~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~ 360 (462)
..|+.+|+.++... -+.+.++.++++..++.+|..++.+++..+..+|-+
T Consensus 5 ~~A~~aLg~l~~~~--~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 5 RAAAWALGRLAEGC--PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHCTTTTT--HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHhccc--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 56778888855443 344556777899999999988888889998877754
No 82
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.24 E-value=2.9e+02 Score=32.71 Aligned_cols=187 Identities=13% Similarity=0.092 Sum_probs=95.0
Q ss_pred hhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHH
Q 012499 218 NIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIM 297 (462)
Q Consensus 218 ~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~ 297 (462)
+++-|-=....|+...+..-.-+.-.+.-+|+.... +|-++|-++..+..+=.-. . .+....+++...
T Consensus 707 ~~lvn~ptt~rsd~~~s~~~e~~qeai~sl~d~qvp---ik~~gL~~l~~l~e~r~~~----~-----~~~~ekvl~i~l 774 (982)
T KOG4653|consen 707 SLLVNIPTTRRSDRRYSVDIEPLQEAISSLHDDQVP---IKGYGLQMLRHLIEKRKKA----T-----LIQGEKVLAIAL 774 (982)
T ss_pred hhhccCCCCccccccccccHHHHHHHHHHhcCCccc---chHHHHHHHHHHHHhcchh----h-----hhhHHHHHHHHH
Confidence 333343333444443333332233334455555443 7888888888776532111 0 023345677777
Q ss_pred hhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCC-------------------------------------chHHHHHHH
Q 012499 298 GILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF-------------------------------------VPQIHKRLV 340 (462)
Q Consensus 298 ~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~-------------------------------------~~~i~~rlv 340 (462)
..|...|.+.-+.|+..+.-||-. -|++.+-.. ...++..++
T Consensus 775 d~LkdedsyvyLnaI~gv~~Lcev-y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl 853 (982)
T KOG4653|consen 775 DTLKDEDSYVYLNAIRGVVSLCEV-YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFL 853 (982)
T ss_pred HHhcccCceeeHHHHHHHHHHHHh-cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 777888877777777744444443 222222100 011222233
Q ss_pred HhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhc-chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhh
Q 012499 341 DLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS-ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAY 419 (462)
Q Consensus 341 ~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~-~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~ 419 (462)
.-+--||...+..++..|-+|.++. +..+.. ...++..++.+..++...+ +||||..|........-+ -++|+
T Consensus 854 ~gvrepd~~~RaSS~a~lg~Lcq~~---a~~vsd~~~ev~~~Il~l~~~d~s~~--vRRaAv~li~~lL~~tg~-dlLpi 927 (982)
T KOG4653|consen 854 SGVREPDHEFRASSLANLGQLCQLL---AFQVSDFFHEVLQLILSLETTDGSVL--VRRAAVHLLAELLNGTGE-DLLPI 927 (982)
T ss_pred HhcCCchHHHHHhHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHccCCchh--hHHHHHHHHHHHHhccch-hhHHH
Confidence 3334466777777766665554421 111111 1223344455555543334 899999999888776553 34565
Q ss_pred HHHH
Q 012499 420 ENAF 423 (462)
Q Consensus 420 E~~l 423 (462)
++.+
T Consensus 928 lr~~ 931 (982)
T KOG4653|consen 928 LRLL 931 (982)
T ss_pred HHHH
Confidence 5443
No 83
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=40.72 E-value=3.6e+02 Score=27.12 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=41.8
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012499 294 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 364 (462)
Q Consensus 294 ~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~ 364 (462)
..|..++.|.|......|++|||-.|.-+.+ .-.+.+..+...+...+.+++..++.++.-+.-.
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~------~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKE------LAKEHLPLFLQALQKDDEEVKITALKALFDLLLT 94 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3344788999999999999999999988762 1112222233333334556666666666666554
No 84
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=39.24 E-value=57 Score=33.68 Aligned_cols=56 Identities=23% Similarity=0.172 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012499 304 FKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 364 (462)
Q Consensus 304 Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~ 364 (462)
|+..++..|+.-..|-.|=.|..+-. -++++..||..+|.+++.+||++++.+++-
T Consensus 1 D~elv~~IL~Ft~lLLEnc~NRslYs-----S~e~L~~LL~s~~~dVl~~aL~ll~~l~qr 56 (329)
T PF06012_consen 1 DKELVLAILRFTRLLLENCGNRSLYS-----SSEHLNSLLNSTDLDVLLAALRLLLRLAQR 56 (329)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCccc-----cHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 67788888888888888777765433 367999999999999999999999998886
No 85
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=39.08 E-value=4.7e+02 Score=28.31 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCC
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPH 390 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h 390 (462)
+-.|++++++.++..+..++=|+||.|+.- -++++|+.+-.|+
T Consensus 309 L~~rLlrLmt~~~~~~k~~vaellf~Lc~~-------------d~~~~v~~~GyG~ 351 (446)
T PF10165_consen 309 LRSRLLRLMTSPDPQLKDAVAELLFVLCKE-------------DASRFVKYVGYGN 351 (446)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHHHhh-------------hHHHHHHHcCchh
Confidence 899999999999999999999999999743 3566666666663
No 86
>PTZ00429 beta-adaptin; Provisional
Probab=38.59 E-value=7e+02 Score=29.13 Aligned_cols=130 Identities=15% Similarity=0.059 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
.|-++|..+---+.+.|. ..|.. .-+...++..=+.+++-.....||++|+++... ...
T Consensus 80 ~d~elKKLvYLYL~~ya~---------~~pel----alLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~--------~i~ 138 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTAR---------LQPEK----ALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVS--------SVL 138 (746)
T ss_pred CCHHHHHHHHHHHHHHcc---------cChHH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--------HHH
Confidence 355799988888887764 22221 013345666667788888889999999986542 123
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 409 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~ 409 (462)
+.+..-+.+.|..++.-++-.+.-+++.+-..+.+ +....+.++.|..++.+. ++.++.-|...|..+...
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe----lv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ----LFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc----cccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHh
Confidence 34666677888889999999999999998776554 334556788888888766 455566666667777544
No 87
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=38.07 E-value=40 Score=30.87 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCC
Q 012499 334 QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 389 (462)
Q Consensus 334 ~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~ 389 (462)
.+++.+.++|+.+|.+++-.+|+||+.+-.- .|...+ ++|-+|+.+.
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~~------~l~pY~---d~L~~Lldd~ 63 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKDP------YLTPYK---DNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------HHHhHH---HHHHHHcCcc
Confidence 4888899999999999999999999987551 222222 6666666554
No 88
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.13 E-value=2.6e+02 Score=29.95 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=71.0
Q ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCC--CCChHHHHHHHHHHHHhhcCCCc
Q 012499 336 HKRLVDLMS-LPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP--HPVPEVCRKAAMILESLVSEPQN 412 (462)
Q Consensus 336 ~~rlv~lL~-l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~--h~~~em~rrAA~~L~~la~~p~n 412 (462)
..-+++.|. .-|.+.+.-..-.|-.|+ +++..|..|+. .|-++.|++++.+. |++-+..|-+-.+|..||-...|
T Consensus 243 l~~L~Eal~A~~dp~~L~~l~~tl~~lA-Vr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv 320 (461)
T KOG4199|consen 243 LTALTEALQAGIDPDSLVSLSTTLKALA-VRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV 320 (461)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHHHH-HHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch
Confidence 334455542 233443333333333332 46777777764 46799999999774 55556788888999999999999
Q ss_pred hhhHHhhHHH--HHHHH---hcchhhHHHHHHHHHHHhcC
Q 012499 413 RVLLLAYENA--FAEIL---FSDGRYSDTFARILYELTSR 447 (462)
Q Consensus 413 r~~ll~~E~~--l~~i~---~sD~~~~~~~~~iL~~l~~~ 447 (462)
++.++.-.-. +-.++ .+||.|.+..+-|+--|.=|
T Consensus 321 Ks~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR 360 (461)
T KOG4199|consen 321 KSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR 360 (461)
T ss_pred HHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc
Confidence 9999865422 22222 24899988887777665544
No 89
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=34.36 E-value=1.4e+02 Score=31.72 Aligned_cols=93 Identities=20% Similarity=0.222 Sum_probs=61.5
Q ss_pred HHHHHHHHh----hhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccC
Q 012499 290 KRAVEAIMG----ILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVN 365 (462)
Q Consensus 290 ~~ll~~l~~----~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~ 365 (462)
+++|..+.. ...+.+....-..+.+|+.+..+-. ...+.+-++.++.-+++-|.++|.+++..+|+.|..+..-.
T Consensus 318 QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP-~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP-KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 445555443 2333343344556777777766433 44555666678888889999999999999999999999877
Q ss_pred HHHHHHHhcchhHHHHHHHh
Q 012499 366 VDCRLKLASERWAIDRLLRV 385 (462)
Q Consensus 366 ~~~~~~ia~~~~~V~~LV~l 385 (462)
...- .-+.+..|.+|+++
T Consensus 397 ~~~i--~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 397 PELI--SEHLSSLIPRLLKL 414 (415)
T ss_pred HHHH--HHHHHHHHHHHHhc
Confidence 4442 22555666666654
No 90
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=33.14 E-value=58 Score=34.86 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=5.9
Q ss_pred CCcCCCCCCCC
Q 012499 20 AAKRGRPFGST 30 (462)
Q Consensus 20 ~~~~~~~~~~~ 30 (462)
+-+||||=|+.
T Consensus 402 ~~~~~~~~~~~ 412 (456)
T PRK10590 402 GGGRGQQQGQP 412 (456)
T ss_pred CCCCCCCCCCC
Confidence 55566655443
No 91
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.42 E-value=6.5e+02 Score=29.72 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCC---------------CChHHHHHHHHHHHHh-hcCCCc
Q 012499 349 DAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPH---------------PVPEVCRKAAMILESL-VSEPQN 412 (462)
Q Consensus 349 ~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h---------------~~~em~rrAA~~L~~l-a~~p~n 412 (462)
.++...+|++|.-.-- .-+....-|.-+..||+... ++|...|+||.++..| .++|+|
T Consensus 221 ~LqlViVE~Irkv~~~------~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdn 294 (948)
T KOG1058|consen 221 SLQLVIVELIRKVCLA------NPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDN 294 (948)
T ss_pred HHHHHHHHHHHHHHhc------CHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCc
Confidence 4555555555543321 12223334666667775432 2577889999887665 689999
Q ss_pred hhhHHhhHHHHHHHHhcchh-hHHHHHHHHHHHhc
Q 012499 413 RVLLLAYENAFAEILFSDGR-YSDTFARILYELTS 446 (462)
Q Consensus 413 r~~ll~~E~~l~~i~~sD~~-~~~~~~~iL~~l~~ 446 (462)
+..+. .+-||.++.-.+.+ ..+.+++||--|++
T Consensus 295 nvklI-vldrl~~l~~~~~~il~~l~mDvLrvLss 328 (948)
T KOG1058|consen 295 NVKLI-VLDRLSELKALHEKILQGLIMDVLRVLSS 328 (948)
T ss_pred chhhh-hHHHHHHHhhhhHHHHHHHHHHHHHHcCc
Confidence 97764 45566666644333 35566677666654
No 92
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=32.30 E-value=71 Score=33.90 Aligned_cols=101 Identities=13% Similarity=0.209 Sum_probs=65.4
Q ss_pred ccHHHHhhCcchHHHH---HhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCC
Q 012499 228 DNEVIMAQHRHCLETV---FQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPF 304 (462)
Q Consensus 228 ~N~~~LA~~~~~l~~L---Llc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~D 304 (462)
.|.+.|-|.+=|-.++ +...... +.+.+.+.|..+++|-.++.-..+-+.. ..++-.+.++|..+|
T Consensus 310 a~vklLykQR~F~~~~p~L~~~~~~~---~~~~k~~yL~ALs~ll~~vP~~vl~~~l--------~~LlPLLlqsL~~~~ 378 (415)
T PF12460_consen 310 ANVKLLYKQRFFTQVLPKLLEGFKEA---DDEIKSNYLTALSHLLKNVPKSVLLPEL--------PTLLPLLLQSLSLPD 378 (415)
T ss_pred chhhhHHhHHHHHHHHHHHHHHHhhc---ChhhHHHHHHHHHHHHhhCCHHHHHHHH--------HHHHHHHHHHhCCCC
Confidence 3455555554433332 2223332 2358899999999998877755332221 235666778889999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHH
Q 012499 305 KAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVD 341 (462)
Q Consensus 305 r~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~ 341 (462)
......+|++|..+.... .+.+.+.+..++.+++.
T Consensus 379 ~~v~~s~L~tL~~~l~~~--~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 379 ADVLLSSLETLKMILEEA--PELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHh
Confidence 999999999999987665 56666656566666654
No 93
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.45 E-value=8.1e+02 Score=28.80 Aligned_cols=128 Identities=22% Similarity=0.241 Sum_probs=66.4
Q ss_pred cchHHHHHhhhcccC-CChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCH---HHHHHHH
Q 012499 237 RHCLETVFQCIEDHV-TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFK---AWHCAAA 312 (462)
Q Consensus 237 ~~~l~~LLlc~~~~~-~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr---~~ii~aL 312 (462)
..++++++.-+...+ +.++...-.||-.++||++.=--..|..+ |...|.|.+- -.+-+||
T Consensus 106 ~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~D---------------I~KlLvS~~~~~~vkqkaAL 170 (938)
T KOG1077|consen 106 SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADD---------------IPKLLVSGSSMDYVKQKAAL 170 (938)
T ss_pred hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhh---------------hHHHHhCCcchHHHHHHHHH
Confidence 444555544443222 23445677789999999863211223222 2234444443 3344454
Q ss_pred HHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhh
Q 012499 313 ELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVI 386 (462)
Q Consensus 313 E~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll 386 (462)
=.|.-+=. +.|++.+- .-.+|++.+|...|--+.-++..++-.|+.-+.+. .+ .+.+.+|..|-+++
T Consensus 171 clL~L~r~---spDl~~~~--~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk-~~~~~avs~L~riv 237 (938)
T KOG1077|consen 171 CLLRLFRK---SPDLVNPG--EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES-YK-TCLPLAVSRLSRIV 237 (938)
T ss_pred HHHHHHhc---CccccChh--hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH-Hh-hhHHHHHHHHHHHH
Confidence 44433333 44444321 26789999998777555666666666666654322 11 12334555555554
No 94
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=4e+02 Score=32.55 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=85.5
Q ss_pred hhhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcC---ccccccccCCcchhhhhcHHH
Q 012499 215 GASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAP---LLDLRIFSSSKQSYIKITEKR 291 (462)
Q Consensus 215 ~~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~---~l~L~~~~~~~~~~i~i~~~~ 291 (462)
|+..|++-++ ..+..-++..+.=++++... .+.-.|+++++.|-+|+. .++.. +.|-...+ ..
T Consensus 720 ~L~~L~~~~~-----~e~~~~i~k~I~EvIL~~Ke---~n~~aR~~Af~lL~~i~~i~~~~d~g----~e~~~~~l--ne 785 (1176)
T KOG1248|consen 720 CLKRLLKLLS-----AEHCDLIPKLIPEVILSLKE---VNVKARRNAFALLVFIGAIQSSLDDG----NEPASAIL--NE 785 (1176)
T ss_pred HHHHHHHhcc-----HHHHHHHHHHHHHHHHhccc---ccHHHHhhHHHHHHHHHHHHhhhccc----ccchHHHH--HH
Confidence 3566666655 22222223333323434422 334689999999988883 22222 11101011 23
Q ss_pred HHHHHHhhhCCCCHHHHHHH-HHHHHHhhcCCCCccccC-CCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012499 292 AVEAIMGILGSPFKAWHCAA-AELLGRLIINPDNEPFLL-PFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 369 (462)
Q Consensus 292 ll~~l~~~L~S~Dr~~ii~a-LE~L~kL~~~~~Ne~~ll-~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~ 369 (462)
++..|..++. .|...+..+ +=+++.+.....| ++. ++++++|+.++-+|.-+..+++.+++.++--+...-...|
T Consensus 786 fl~~Isagl~-gd~~~~~as~Ivai~~il~e~~~--~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~ 862 (1176)
T KOG1248|consen 786 FLSIISAGLV-GDSTRVVASDIVAITHILQEFKN--ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC 862 (1176)
T ss_pred HHHHHHhhhc-ccHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555443 233333333 6666666555432 222 4567899999999999999999999999998888766664
Q ss_pred HHHhcchhHHHHHHHh
Q 012499 370 LKLASERWAIDRLLRV 385 (462)
Q Consensus 370 ~~ia~~~~~V~~LV~l 385 (462)
. ..+.+-.+..+.++
T Consensus 863 l-~~~~~~LL~sll~l 877 (1176)
T KOG1248|consen 863 L-SPHLEELLPSLLAL 877 (1176)
T ss_pred H-hhhHHHHHHHHHHH
Confidence 4 22333344444553
No 95
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=30.84 E-value=3.5e+02 Score=31.06 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH
Q 012499 290 KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC 368 (462)
Q Consensus 290 ~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~-i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~ 368 (462)
..++.-|.+++.|+|+-..-+++-+|..++ +|+.-|.+.+-. ++..+-.=+-.+...++.-++-+|+.|-++..+-
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~---d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLS---DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Q ss_pred HHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHH
Q 012499 369 RLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLL 417 (462)
Q Consensus 369 ~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll 417 (462)
-..++. .|+.++.-. +.+=+||+| |+++.-.+..+|.+|
T Consensus 167 en~~~n------~l~~~vqnD--PS~EVRr~a--llni~vdnsT~p~Il 205 (885)
T COG5218 167 ENRIVN------LLKDIVQND--PSDEVRRLA--LLNISVDNSTYPCIL 205 (885)
T ss_pred HHHHHH------HHHHHHhcC--cHHHHHHHH--HHHeeeCCCcchhHH
No 96
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=29.70 E-value=2.1e+02 Score=35.17 Aligned_cols=96 Identities=21% Similarity=0.168 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCch
Q 012499 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP 333 (462)
Q Consensus 254 d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~ 333 (462)
|..||-..+|.+.-++.++--+ +. +..++-.+.++|.-..-+.+..||++|..||...-=. -+.+-
T Consensus 630 Dw~LR~aFfdsI~gvsi~VG~r----s~-------seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~---K~~v~ 695 (1431)
T KOG1240|consen 630 DWRLRGAFFDSIVGVSIFVGWR----SV-------SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLR---KPAVK 695 (1431)
T ss_pred cHHHHHHHHhhccceEEEEeee----eH-------HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccc---hHHHH
Confidence 5579999999988888766654 11 1234455566677777788999999999999765311 12233
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012499 334 QIHKRLVDLMSLPAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 334 ~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~ 363 (462)
++.+.+.-||++|..=++-+++.+++..++
T Consensus 696 ~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 696 DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 477888889999999999999999988766
No 97
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=29.29 E-value=1.7e+02 Score=28.23 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=52.3
Q ss_pred cCCcHHHHHHHHHHHHHHhhccCHHHHHHHh--------------cchhHHHHHHHhhcCC---CCC-hHHHHHHHHHHH
Q 012499 343 MSLPAFDAQAAAVGALYNLAEVNVDCRLKLA--------------SERWAIDRLLRVIKTP---HPV-PEVCRKAAMILE 404 (462)
Q Consensus 343 L~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia--------------~~~~~V~~LV~ll~~~---h~~-~em~rrAA~~L~ 404 (462)
+.-++..+-+.+.-+|.|||....-+..-+- .....++.|+.+...| ..| .+-.-..|-.|.
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 3344555667777788899987655542221 1345789999776553 112 234667899999
Q ss_pred HhhcCCCchhhHHhhH
Q 012499 405 SLVSEPQNRVLLLAYE 420 (462)
Q Consensus 405 ~la~~p~nr~~ll~~E 420 (462)
++++.|+=|.+|+-=+
T Consensus 84 NlS~~~~gR~~~l~~~ 99 (192)
T PF04063_consen 84 NLSQLPEGRQFFLDPQ 99 (192)
T ss_pred HhcCCHHHHHHHhCch
Confidence 9999999999998433
No 98
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.76 E-value=1e+03 Score=28.03 Aligned_cols=148 Identities=13% Similarity=0.117 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
.|..|+=.+|=.++.|++ .+|.. + ..--+.|.+||.-.|-+.-++||+.|..+-..+ |.
T Consensus 311 sDqNLKYlgLlam~KI~k---------tHp~~--V--qa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl------- 369 (877)
T KOG1059|consen 311 SDQNLKYLGLLAMSKILK---------THPKA--V--QAHKDLILRCLDDKDESIRLRALDLLYGMVSKK-NL------- 369 (877)
T ss_pred CCccHHHHHHHHHHHHhh---------hCHHH--H--HHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hH-------
Confidence 345799999999998885 44433 2 223477889999999999999999999975443 32
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHH-hhcCC
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILES-LVSEP 410 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~-~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~-la~~p 410 (462)
-.|.++++..+.-.+. -.|+-|.|+-+.++ ....=.-|..-+|-+.-||.|-..+| -+...+-|.-+.. ..|+|
T Consensus 370 ~eIVk~LM~~~~~ae~--t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~--~~~G~~I~eQi~Dv~iRV~ 445 (877)
T KOG1059|consen 370 MEIVKTLMKHVEKAEG--TNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEG--TRHGSLIAEQIIDVAIRVP 445 (877)
T ss_pred HHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc--cchhhHHHHHHHHHheech
Confidence 2245555555543333 36777778877776 23333467889999999999876654 1223333333333 35788
Q ss_pred CchhhHHhhHHHHHH
Q 012499 411 QNRVLLLAYENAFAE 425 (462)
Q Consensus 411 ~nr~~ll~~E~~l~~ 425 (462)
.-|+..+-.=..|+.
T Consensus 446 ~iR~fsV~~m~~Ll~ 460 (877)
T KOG1059|consen 446 SIRPFSVSQMSALLD 460 (877)
T ss_pred hhhHhHHHHHHHHHh
Confidence 888877665555555
No 99
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=27.74 E-value=3.3e+02 Score=25.14 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=67.8
Q ss_pred hhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCcccccccc-----------CC---c--chhhh------hcH--
Q 012499 234 AQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFS-----------SS---K--QSYIK------ITE-- 289 (462)
Q Consensus 234 A~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~-----------~~---~--~~~i~------i~~-- 289 (462)
-++|.++..|+.+++.. ...++|..++-.++.|+. +|--.+. .+ . +..+. .++
T Consensus 6 ~~yP~LL~~L~~iLk~e--~s~~iR~E~lr~lGilGA-LDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 6 LDYPELLDILLNILKTE--QSQSIRREALRVLGILGA-LDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred HHhHHHHHHHHHHHHhC--CCHHHHHHHHHHhhhccc-cCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHH
Confidence 36788999888887654 224689999998888774 3322110 00 0 00000 011
Q ss_pred --HHHHHHHHhhhCC-CCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhh
Q 012499 290 --KRAVEAIMGILGS-PFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLA 362 (462)
Q Consensus 290 --~~ll~~l~~~L~S-~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls 362 (462)
.....++++.|.. +...-+-.++.++-.+....+ ..- .+++|+++..+++.+-.-+..++++.+.-|..|.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~-~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLG-LKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC-cCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1233444555532 222333456666666664422 222 6777888888888776444488888665555443
No 100
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=27.64 E-value=4.8e+02 Score=28.21 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH-HHHHHHHhcCCc-----HHHHHHHHHHHHHHhhccCHHHHHHHhc
Q 012499 301 GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLP-----AFDAQAAAVGALYNLAEVNVDCRLKLAS 374 (462)
Q Consensus 301 ~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~-i~~rlv~lL~l~-----D~~L~~~aLe~LY~Ls~~~~~~~~~ia~ 374 (462)
.+.|-...+-||+||+++.-+.....-+. .+. ....+++.|... +.+..-+.+-+|.-+|.........++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~--~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIF--VDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHH--HHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 45566677889999998776654333111 111 334455555443 4566667778888888888888888898
Q ss_pred chhHHHHHHHhhcCC--------C----C---ChHHHHHHHHHHHHhhcCCCchh
Q 012499 375 ERWAIDRLLRVIKTP--------H----P---VPEVCRKAAMILESLVSEPQNRV 414 (462)
Q Consensus 375 ~~~~V~~LV~ll~~~--------h----~---~~em~rrAA~~L~~la~~p~nr~ 414 (462)
..+.++.++..++.. . | ..+.+.-+-+++.++-.+.....
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~ 174 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSV 174 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCccc
Confidence 888888887765321 1 1 11245556667777766554443
No 101
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=27.55 E-value=3.9e+02 Score=30.72 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=49.1
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHH-HHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012499 294 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI-HKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 369 (462)
Q Consensus 294 ~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i-~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~ 369 (462)
+++.+.+.+.|-.....++..|..+.=+.+++..... ...+ -+.|+.+..-+|-.+++.|+.+|-||+.-..+.-
T Consensus 464 d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~-~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~sv 539 (678)
T KOG1293|consen 464 DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQL-LAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSV 539 (678)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHH-HHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHH
Confidence 3444555556666666677777777766665543322 1122 3335677788999999999999999998655443
No 102
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=27.40 E-value=74 Score=34.08 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=15.2
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCC
Q 012499 14 GGAATPAAKRGRPFGSTSGSSGGSGSA 40 (462)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (462)
||+.|+++ |.++-++++++++....
T Consensus 402 ~~~~~~~~--~~~~~~~~~~~~~~~~~ 426 (456)
T PRK10590 402 GGGRGQQQ--GQPRRGEGGAKSASAKP 426 (456)
T ss_pred CCCCCCCC--CCCCcCCCCCccccccC
Confidence 44444444 78888887766655444
No 103
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.09 E-value=1.3e+02 Score=26.40 Aligned_cols=51 Identities=25% Similarity=0.418 Sum_probs=43.2
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHH
Q 012499 375 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL 427 (462)
Q Consensus 375 ~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~ 427 (462)
++|.|..||+=|-+. +++|+..|-..|......+++...++.+.+.|..+.
T Consensus 6 ~~w~i~lLv~QL~D~--~~~V~~~A~~iL~e~c~~~~~le~~v~~~p~l~~L~ 56 (115)
T PF14663_consen 6 EDWGIELLVTQLYDP--SPEVVAAALEILEEACEDKEYLEYLVSLRPSLDHLG 56 (115)
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhchhhHHHHHHcCcHHHHHH
Confidence 578899999888777 579999999999999999988888888888876654
No 104
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=27.00 E-value=1.6e+02 Score=28.24 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=53.9
Q ss_pred HHHHHHHhhhCCC-CHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012499 291 RAVEAIMGILGSP-FKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 364 (462)
Q Consensus 291 ~ll~~l~~~L~S~-Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~ 364 (462)
-++.++...|..+ +-..+...++||.-|.++-.=..+=.+.++.++..+..++...|.+.+.++|-++-.+.+.
T Consensus 101 ~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 101 ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 4566777666544 5667788899999888774433333455666777788888889999999999888877765
No 105
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=26.91 E-value=8.8e+02 Score=27.49 Aligned_cols=190 Identities=18% Similarity=0.161 Sum_probs=114.0
Q ss_pred HhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCC
Q 012499 244 FQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPD 323 (462)
Q Consensus 244 Llc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~ 323 (462)
|.|.-+.-. ++|+-+-+..-.|...+..- .. +.++-.+...+...-=-....++|.|+. +.+.
T Consensus 222 l~~~~d~~~---~Vr~Aa~~a~kai~~~~~~~----aV--------K~llpsll~~l~~~kWrtK~aslellg~--m~~~ 284 (569)
T KOG1242|consen 222 LTNFGDKIN---KVREAAVEAAKAIMRCLSAY----AV--------KLLLPSLLGSLLEAKWRTKMASLELLGA--MADC 284 (569)
T ss_pred HHHhhccch---hhhHHHHHHHHHHHHhcCcc----hh--------hHhhhhhHHHHHHHhhhhHHHHHHHHHH--HHHh
Confidence 555544322 57777777776665544432 11 1222222222222211124789999994 4444
Q ss_pred CccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH---------HHHHhc----chhHHHHHH--HhhcC
Q 012499 324 NEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC---------RLKLAS----ERWAIDRLL--RVIKT 388 (462)
Q Consensus 324 Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~---------~~~ia~----~~~~V~~LV--~ll~~ 388 (462)
--..+.-+.|.++..+.+-|.-.+.+++.+..++|-++.+.-+.. -..++. .+.+++.|. .|+..
T Consensus 285 ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~ 364 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAE 364 (569)
T ss_pred chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeee
Confidence 445555677889999999999999999999999999999862111 112222 222333331 11110
Q ss_pred -CCC----------------ChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHH----HHh-cchhhHHHHHHHHHHHhc
Q 012499 389 -PHP----------------VPEVCRKAAMILESLVSEPQNRVLLLAYENAFAE----ILF-SDGRYSDTFARILYELTS 446 (462)
Q Consensus 389 -~h~----------------~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~----i~~-sD~~~~~~~~~iL~~l~~ 446 (462)
.-| ..++-|++|.+.-+|++.=+++..+-||=..|+- +.. .+|.+-.+-+|.|-.+-.
T Consensus 365 V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 365 VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 001 2357799999999999998888887766555442 222 289999999999965555
Q ss_pred CCCC
Q 012499 447 RPNN 450 (462)
Q Consensus 447 ~~~~ 450 (462)
|.++
T Consensus 445 ~~g~ 448 (569)
T KOG1242|consen 445 RLGE 448 (569)
T ss_pred HHHh
Confidence 4443
No 106
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=26.37 E-value=3.3e+02 Score=26.16 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=61.9
Q ss_pred HHHHHHHhcCC------cHHHHHHHHHHHHHHhhccCHHHHHHHhcchhH--HHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012499 335 IHKRLVDLMSL------PAFDAQAAAVGALYNLAEVNVDCRLKLASERWA--IDRLLRVIKTPHPVPEVCRKAAMILESL 406 (462)
Q Consensus 335 i~~rlv~lL~l------~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~--V~~LV~ll~~~h~~~em~rrAA~~L~~l 406 (462)
.+.+++++..- +..+-..+.--+|.|+|++-+--..-+-.+++. |..|+-+.++. +..--+-+|.|+-|.
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHHh
Confidence 56667666654 555778888889999999865554444556666 78888888766 665566789999999
Q ss_pred hcCCCchhhHHhhH
Q 012499 407 VSEPQNRVLLLAYE 420 (462)
Q Consensus 407 a~~p~nr~~ll~~E 420 (462)
+=+-++...|+-=|
T Consensus 131 cFd~~~H~~LL~~~ 144 (192)
T PF04063_consen 131 CFDTDSHEWLLSDD 144 (192)
T ss_pred hccHhHHHHhcCch
Confidence 99888887776643
No 107
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=25.98 E-value=1.5e+02 Score=27.38 Aligned_cols=84 Identities=24% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCCC-HHHHHHHHHHHHHhhcCCCCccccC-----CCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012499 290 KRAVEAIMGILGSPF-KAWHCAAAELLGRLIINPDNEPFLL-----PFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 290 ~~ll~~l~~~L~S~D-r~~ii~aLE~L~kL~~~~~Ne~~ll-----~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~ 363 (462)
..++..+...|+++| ....-.|..+|.+|...-...+-+. +.+|.+++-++.++.- ....+.+|++|+.+-.
T Consensus 66 ~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 66 SQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Q ss_pred cCHHHHHHHhcc
Q 012499 364 VNVDCRLKLASE 375 (462)
Q Consensus 364 ~~~~~~~~ia~~ 375 (462)
.-..+++-.+..
T Consensus 144 ~~ptt~rp~~~k 155 (165)
T PF08167_consen 144 HHPTTFRPFANK 155 (165)
T ss_pred HCCccccchHHH
No 108
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=24.96 E-value=1.1e+03 Score=28.02 Aligned_cols=170 Identities=21% Similarity=0.217 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHH
Q 012499 257 LVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIH 336 (462)
Q Consensus 257 Lr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~ 336 (462)
|+..+.|+++.+ ..|+.|. . ++ --+|+..+.|+.++++...+.|.-+|.-+..++.--+.+.+-+|..-
T Consensus 476 L~Srace~is~~--eeDfkd~--~------il-l~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tm 544 (970)
T COG5656 476 LKSRACEFISTI--EEDFKDN--G------IL-LEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETM 544 (970)
T ss_pred hHHHHHHHHHHH--HHhcccc--h------HH-HHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHH
Confidence 688889999988 6677643 1 11 24688889999999999999999899888888765555555566665
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHH-HhhccCHHHHHHHhcchhHHHHHHHhhcCCCCC----------hHHHHHHHH---H
Q 012499 337 KRLVDLMSLPAFDAQAAAVGALY-NLAEVNVDCRLKLASERWAIDRLLRVIKTPHPV----------PEVCRKAAM---I 402 (462)
Q Consensus 337 ~rlv~lL~l~D~~L~~~aLe~LY-~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~----------~em~rrAA~---~ 402 (462)
+.+..|=-.=+++.+..++|-+. ++++-=...+-.+|. ..|++-+++-..-|.| .+|. |.. |
T Consensus 545 ekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~--~Lv~qFlkiaq~l~ens~d~~s~vDDKqma--asGiL~T 620 (970)
T COG5656 545 EKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAG--SLVRQFLKIAQSLLENSSDTSSVVDDKQMA--ASGILRT 620 (970)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHH--HHHHHHHHHHHHHHcCCccccccccHHHHH--HHHHHHH
Confidence 66555544455677777776553 444432333333332 2344444443111111 1121 222 3
Q ss_pred HHHhhcCCCchhhHHhhH-HHHHH-HHh-cchhhHHHHHHHH
Q 012499 403 LESLVSEPQNRVLLLAYE-NAFAE-ILF-SDGRYSDTFARIL 441 (462)
Q Consensus 403 L~~la~~p~nr~~ll~~E-~~l~~-i~~-sD~~~~~~~~~iL 441 (462)
+.+|--.=+|++..|.+= .-+.. +.+ .++...|..+..+
T Consensus 621 ~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~ 662 (970)
T COG5656 621 IESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEAL 662 (970)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444557888777653 33333 222 3777777666554
No 109
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=24.57 E-value=4.3e+02 Score=22.31 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=53.7
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH
Q 012499 292 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD 367 (462)
Q Consensus 292 ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~ 367 (462)
.|+.++.-|.++.-...--||..|++|....+ .-....+.++.-+...|..+|.=+=..|+.+|.+|+....+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 35666677777777777889999999999888 11122355777777888888887888888888888876544
No 110
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.22 E-value=5.7e+02 Score=29.13 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=90.1
Q ss_pred CCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCC
Q 012499 225 FMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPF 304 (462)
Q Consensus 225 f~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~D 304 (462)
+-+.++.++++.-+ =++-|.++. |..+|-||-|.+-|||+--.=..+ .| -..+|..+++...-+
T Consensus 74 Lg~~~~~Y~~~iv~---Pv~~cf~D~---d~~vRyyACEsLYNiaKv~k~~v~-----~~----Fn~iFdvL~klsaDs- 137 (675)
T KOG0212|consen 74 LGIKDAGYLEKIVP---PVLNCFSDQ---DSQVRYYACESLYNIAKVAKGEVL-----VY----FNEIFDVLCKLSADS- 137 (675)
T ss_pred hccccHHHHHHhhH---HHHHhccCc---cceeeeHhHHHHHHHHHHhccCcc-----cc----hHHHHHHHHHHhcCC-
Confidence 45577777777422 345688774 446999999999999874433221 11 134567776643222
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHH
Q 012499 305 KAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLR 384 (462)
Q Consensus 305 r~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ 384 (462)
...+..+.|.|.+|..----+..=.=-++.+++-+-+-+-..+.+-+.+.++-||-|-..-.- .++..-+...+.|..
T Consensus 138 d~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~--~m~~yl~~~ldGLf~ 215 (675)
T KOG0212|consen 138 DQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL--EMISYLPSLLDGLFN 215 (675)
T ss_pred ccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH--HHHhcchHHHHHHHH
Confidence 235677889888886542222110000112222222233345778999999999988765322 356677888999999
Q ss_pred hhcCCCC
Q 012499 385 VIKTPHP 391 (462)
Q Consensus 385 ll~~~h~ 391 (462)
++++.|+
T Consensus 216 ~LsD~s~ 222 (675)
T KOG0212|consen 216 MLSDSSD 222 (675)
T ss_pred HhcCCcH
Confidence 9998853
No 111
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.17 E-value=1e+03 Score=26.59 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=78.8
Q ss_pred hCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhC-CCCHHHHHHHHH
Q 012499 235 QHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILG-SPFKAWHCAAAE 313 (462)
Q Consensus 235 ~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~-S~Dr~~ii~aLE 313 (462)
+++.+-.+++..+...+..+.-+|+.+.-.++|.+....=. +..--..++.+|..+|. ..+...++.++.
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k---------v~th~~~~ldaii~gL~D~~~~~V~leam~ 322 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDK---------VRTHKTTQLDAIIRGLYDDLNEEVQLEAMK 322 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHH---------HHHhHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 55555556666666666666689999999999999752111 00111245677777664 556777888888
Q ss_pred HHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012499 314 LLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 364 (462)
Q Consensus 314 ~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~ 364 (462)
+|.++.-.-.|-++-.-+++ +--|+..+.-..+.+++.++..++=+|+.+
T Consensus 323 ~Lt~v~~~~~~~~l~~~~l~-ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 323 CLTMVLEKASNDDLESYLLN-IALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHHHHHHhhhhcchhhhchh-HHHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 88887766555443222222 334566666667888999998888888876
No 112
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.13 E-value=1e+02 Score=27.69 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=46.3
Q ss_pred HHHHHHHhhh-CCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH--HHHHHHHhcCCcHHHHHHHHHHHHHHh
Q 012499 291 RAVEAIMGIL-GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ--IHKRLVDLMSLPAFDAQAAAVGALYNL 361 (462)
Q Consensus 291 ~ll~~l~~~L-~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~--i~~rlv~lL~l~D~~L~~~aLe~LY~L 361 (462)
.+++.|...| .|.|...+.-|.-=|+.++....+-..++ .+ .=.+|++|+..+|.+++--||-++..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii---~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNII---EKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHH---HHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHH---HhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4677777777 45566556556666777776654433332 22 567899999999999999999888765
No 113
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=22.38 E-value=6.7e+02 Score=27.00 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=59.7
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccC-------
Q 012499 293 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVN------- 365 (462)
Q Consensus 293 l~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~------- 365 (462)
+..++.+|.+.+......+.+.|+++-. ++....++.+|..++.-++.++++.+-.-..--
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~ 155 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHDPGPALEAA 155 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccChHHHHHHH
Confidence 5777788888887788888888876322 234555666666666666655555554422110
Q ss_pred ---------HHHHHHHh--cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHh
Q 012499 366 ---------VDCRLKLA--SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLA 418 (462)
Q Consensus 366 ---------~~~~~~ia--~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~ 418 (462)
..+...+. ....++..|+..+.+. ++ .+|++|..=+.+...|+--..++.
T Consensus 156 L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~--~~-~VR~aA~~al~~lG~~~A~~~l~~ 216 (410)
T TIGR02270 156 LTHEDALVRAAALRALGELPRRLSESTLRLYLRDS--DP-EVRFAALEAGLLAGSRLAWGVCRR 216 (410)
T ss_pred hcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCC--CH-HHHHHHHHHHHHcCCHhHHHHHHH
Confidence 11111111 1223344455444433 34 356666655555566766655554
No 114
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.13 E-value=5.2e+02 Score=30.23 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=67.4
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhc----CCcHHHHHHHHHHHHHHhhcc-C
Q 012499 291 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLM----SLPAFDAQAAAVGALYNLAEV-N 365 (462)
Q Consensus 291 ~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL----~l~D~~L~~~aLe~LY~Ls~~-~ 365 (462)
.++.-|.++.+|+|+...-+++-+|++|.- +| .-| .+.+|..+..-| -.+..-++.-++-+|..|-.. +
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d--~~-~ei---dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSD--EN-AEI---DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhc--cc-ccc---CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 456677788899999999999999999886 22 122 222444443322 234556787788888777653 2
Q ss_pred HHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHH
Q 012499 366 VDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLL 417 (462)
Q Consensus 366 ~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll 417 (462)
++-| ..+..|+.++.-. |++| +|||| |++++-.+..+|.++
T Consensus 159 dee~-------~v~n~l~~liqnD-pS~E-VRRaa--LsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 159 DEEC-------PVVNLLKDLIQND-PSDE-VRRAA--LSNISVDNSTLPCIV 199 (892)
T ss_pred CCcc-------cHHHHHHHHHhcC-CcHH-HHHHH--HHhhccCcccchhHH
Confidence 2211 2455556666544 5555 46666 567776666666553
No 115
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=21.93 E-value=2.1e+02 Score=28.74 Aligned_cols=65 Identities=15% Similarity=0.013 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcCcccccc-ccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCC
Q 012499 258 VTNALETIVNLAPLLDLRI-FSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDN 324 (462)
Q Consensus 258 r~~aLdil~nIA~~l~L~~-~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~N 324 (462)
.+.+=|++..++.+..++- .++++| ..||..-+-..+..|+.|..++---.--=.|.||++...+
T Consensus 158 ~~~~e~lFd~~~cYFPI~F~pp~~dp--~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 158 SEFAEDLFDVFSCYFPITFRPPPNDP--YGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPS 223 (262)
T ss_pred chhHHHHHHHhhheeeeeeeCCCCCC--CCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcH
Confidence 4445555666666777652 122333 3688777788888888887776555555566777766544
No 116
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.85 E-value=1.2e+03 Score=26.40 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=41.3
Q ss_pred hhhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccc
Q 012499 215 GASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLR 275 (462)
Q Consensus 215 ~~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~ 275 (462)
.++..+.-||..-+|..+|-++-.+-.+ +.+.. .++++|++..|-.+=|++-.--|+
T Consensus 323 lv~~FLkKLSIf~eNK~~M~~~~iveKL-~klfp---~~h~dL~~~tl~LlfNlSFD~glr 379 (791)
T KOG1222|consen 323 LVIKFLKKLSIFDENKIVMEQNGIVEKL-LKLFP---IQHPDLRKATLMLLFNLSFDSGLR 379 (791)
T ss_pred HHHHHHHHhhhhccchHHHHhccHHHHH-HHhcC---CCCHHHHHHHHHHhhhcccccccc
Confidence 3567788899999999999998765443 22222 244579999999999988665554
No 117
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=21.46 E-value=3.6e+02 Score=33.22 Aligned_cols=97 Identities=21% Similarity=0.180 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCC-chH
Q 012499 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF-VPQ 334 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~-~~~ 334 (462)
+.|..||+.+..++.+++=.+. + ++++-.++.++.-++--....|||+|+++-..-.-.+-...+ .|.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~---------L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e 506 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVK---------L--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE 506 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHH---------H--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh
Confidence 5899999999999987765421 1 355666777777788888899999999987653322222221 222
Q ss_pred -HHHHHHHhcCC-cHHHHHHHHHHHHHHhhc
Q 012499 335 -IHKRLVDLMSL-PAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 335 -i~~rlv~lL~l-~D~~L~~~aLe~LY~Ls~ 363 (462)
++.+|-+++.. ...-++.+-=.+|-+|+.
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 67777777765 222233333344444443
No 118
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.35 E-value=84 Score=27.20 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCCC----HHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHH
Q 012499 290 KRAVEAIMGILGSPF----KAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGAL 358 (462)
Q Consensus 290 ~~ll~~l~~~L~S~D----r~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~L 358 (462)
..++..+.+.+.... ......+|+++.....--.-+.++... +++.++++| ++..+++.|+|||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~---~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSN---LLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSS---HHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHH---HHHHHHHHc--CCHHHHHHHHHhC
No 119
>smart00311 PWI PWI, domain in splicing factors.
Probab=21.32 E-value=1.3e+02 Score=24.24 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=24.1
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYN 360 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~ 360 (462)
|.|-+++.++|+..|..+++++++++-.
T Consensus 11 ~WI~~kv~e~LG~~d~~vvd~i~~~l~~ 38 (74)
T smart00311 11 PWITKKVIEFLGFEEDTLVEFILSQIRQ 38 (74)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 3478899999999999999999988853
No 120
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=21.09 E-value=6e+02 Score=25.90 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhhcCCCCccccCC-CchH-HHHHHHHhcCC-cHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHH
Q 012499 306 AWHCAAAELLGRLIINPDNEPFLLP-FVPQ-IHKRLVDLMSL-PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRL 382 (462)
Q Consensus 306 ~~ii~aLE~L~kL~~~~~Ne~~ll~-~~~~-i~~rlv~lL~l-~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~L 382 (462)
..++.||-.|--++..++-...+++ -+|- +|.-+-.---. +-+-++..+|.+.-.|.+.++.--...-.....|...
T Consensus 65 nRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc 144 (262)
T PF04078_consen 65 NRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC 144 (262)
T ss_dssp HHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence 4578899999999998887665543 3443 33333111111 3357899999999999998766655566666788888
Q ss_pred HHhhcCCCCChHHHHHHHHHH-HHhhcCCCchhhHHhhHHHHHHHHhc------------chhhHHHHHHHHHHHhcCCC
Q 012499 383 LRVIKTPHPVPEVCRKAAMIL-ESLVSEPQNRVLLLAYENAFAEILFS------------DGRYSDTFARILYELTSRPN 449 (462)
Q Consensus 383 V~ll~~~h~~~em~rrAA~~L-~~la~~p~nr~~ll~~E~~l~~i~~s------------D~~~~~~~~~iL~~l~~~~~ 449 (462)
++.++.| .|+.|-.|..+ ..+=....-..++-+--.|+..++.. .++.-++|-|+-..||.++.
T Consensus 145 Lr~me~G---selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 145 LRIMEFG---SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHHHHS----HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHhc---cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 9999988 67777766544 44444555555554445555555531 67778888888888888876
Q ss_pred Cc
Q 012499 450 NK 451 (462)
Q Consensus 450 ~~ 451 (462)
.+
T Consensus 222 ar 223 (262)
T PF04078_consen 222 AR 223 (262)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 121
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=20.83 E-value=1.1e+03 Score=25.47 Aligned_cols=56 Identities=20% Similarity=0.021 Sum_probs=39.1
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Q 012499 294 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNL 361 (462)
Q Consensus 294 ~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~L 361 (462)
..+...|...|......|+++|++|...+. ...+...+...|.+++..++..|-.+
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~~~a------------~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPRRLS------------ESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccccc------------hHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 455566777888888888888888765432 23355667778888888888877433
No 122
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.01 E-value=3.7e+02 Score=24.13 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012499 334 QIHKRLVDLMSL-PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESL 406 (462)
Q Consensus 334 ~i~~rlv~lL~l-~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~l 406 (462)
++++.++.+|.- .|...+..+..=|.++...-.. .+.+...-++=.....|+++ +++|+-+.|=.++..|
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNH--EDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 489999999944 5665555555556666665433 35566666666777777775 4888888776666554
Done!