Query 012499
Match_columns 462
No_of_seqs 114 out of 136
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 98.9 1.4E-08 4.7E-13 93.7 15.3 219 216-452 22-247 (252)
2 4db8_A Armadillo-repeat protei 98.8 4.7E-08 1.6E-12 91.1 14.4 177 216-409 74-252 (252)
3 4db6_A Armadillo repeat protei 98.7 1.8E-07 6.3E-12 84.9 14.1 177 216-409 32-210 (210)
4 4hxt_A De novo protein OR329; 98.7 1.2E-07 4.1E-12 87.4 12.3 182 216-414 64-247 (252)
5 3nmw_A APC variant protein; AR 98.7 2.5E-07 8.5E-12 94.0 14.9 221 216-447 52-293 (354)
6 3nmw_A APC variant protein; AR 98.7 1.9E-07 6.6E-12 94.9 13.7 224 216-453 104-341 (354)
7 4db6_A Armadillo repeat protei 98.6 6.9E-07 2.4E-11 81.0 15.5 190 241-446 15-209 (210)
8 4db8_A Armadillo-repeat protei 98.6 1E-06 3.5E-11 82.0 16.8 212 217-445 33-250 (252)
9 3nmz_A APC variant protein; pr 98.6 9.1E-07 3.1E-11 93.1 16.5 221 216-447 168-409 (458)
10 3nmz_A APC variant protein; pr 98.6 4.7E-07 1.6E-11 95.3 13.7 224 215-452 219-456 (458)
11 2z6h_A Catenin beta-1, beta-ca 98.5 3.3E-06 1.1E-10 90.7 20.2 277 64-448 15-294 (644)
12 1jdh_A Beta-catenin; beta-cate 98.5 1.1E-06 3.8E-11 90.2 15.3 217 216-448 37-258 (529)
13 2z6h_A Catenin beta-1, beta-ca 98.5 1.6E-06 5.6E-11 93.1 17.0 218 216-448 34-255 (644)
14 1jdh_A Beta-catenin; beta-cate 98.5 7.1E-06 2.4E-10 84.1 19.1 277 64-448 18-297 (529)
15 3l6x_A Catenin delta-1; cateni 98.4 3.2E-06 1.1E-10 91.5 14.4 173 236-419 306-487 (584)
16 2z6g_A B-catenin; FULL-length, 98.3 4.3E-06 1.5E-10 92.7 15.2 218 216-448 170-391 (780)
17 4b8j_A Importin subunit alpha- 98.3 2E-05 7E-10 81.7 17.7 215 216-447 138-359 (528)
18 1xm9_A Plakophilin 1; armadill 98.3 8.4E-06 2.9E-10 84.6 14.4 151 294-451 5-177 (457)
19 1xm9_A Plakophilin 1; armadill 98.3 7.6E-06 2.6E-10 84.9 13.6 180 254-446 15-220 (457)
20 2jdq_A Importin alpha-1 subuni 98.2 3.5E-05 1.2E-09 77.1 17.1 216 216-447 127-348 (450)
21 3now_A UNC-45 protein, SD10334 98.2 2.6E-05 8.9E-10 87.4 17.7 200 231-446 489-694 (810)
22 4b8j_A Importin subunit alpha- 98.2 2.3E-05 7.9E-10 81.3 15.9 216 216-447 180-401 (528)
23 1wa5_B Importin alpha subunit; 98.2 2.8E-05 9.6E-10 81.0 16.1 215 216-447 193-413 (530)
24 3tt9_A Plakophilin-2; cell adh 98.1 8.7E-06 3E-10 78.5 10.3 149 293-447 10-181 (233)
25 2jdq_A Importin alpha-1 subuni 98.1 0.00011 3.7E-09 73.5 18.6 213 216-447 85-306 (450)
26 2z6g_A B-catenin; FULL-length, 98.1 0.00012 4.2E-09 81.0 19.5 215 216-448 213-430 (780)
27 3opb_A SWI5-dependent HO expre 98.1 9.9E-05 3.4E-09 82.2 18.1 227 216-443 477-775 (778)
28 3now_A UNC-45 protein, SD10334 98.1 0.00011 3.7E-09 82.4 18.5 160 236-411 288-453 (810)
29 1wa5_B Importin alpha subunit; 98.0 0.00012 4.1E-09 76.3 16.9 215 216-447 151-371 (530)
30 3l6x_A Catenin delta-1; cateni 98.0 3.7E-05 1.3E-09 83.2 12.9 150 293-448 50-223 (584)
31 1xqr_A HSPBP1 protein; armadil 98.0 2.1E-05 7.2E-10 78.0 9.9 217 215-448 59-289 (296)
32 3tpo_A Importin subunit alpha- 98.0 0.00024 8.1E-09 74.6 18.0 216 216-448 140-366 (529)
33 3tpo_A Importin subunit alpha- 97.8 0.00017 5.9E-09 75.7 14.5 219 216-448 182-408 (529)
34 3ul1_B Importin subunit alpha- 97.8 6.5E-05 2.2E-09 78.7 11.2 220 216-448 163-389 (510)
35 3ul1_B Importin subunit alpha- 97.8 0.00016 5.6E-09 75.7 13.6 211 216-441 252-473 (510)
36 3opb_A SWI5-dependent HO expre 97.8 0.00067 2.3E-08 75.6 18.8 200 231-445 451-682 (778)
37 3tt9_A Plakophilin-2; cell adh 97.7 0.00017 5.7E-09 69.5 9.8 118 335-455 9-133 (233)
38 1xqr_A HSPBP1 protein; armadil 97.5 0.00033 1.1E-08 69.4 10.6 184 216-413 102-292 (296)
39 3ltm_A Alpha-REP4; protein eng 97.1 0.035 1.2E-06 50.0 17.5 160 237-451 49-208 (211)
40 3ltm_A Alpha-REP4; protein eng 96.8 0.032 1.1E-06 50.3 15.3 127 233-407 14-140 (211)
41 3ltj_A Alpharep-4; protein eng 96.8 0.095 3.2E-06 46.8 18.0 155 237-446 44-198 (201)
42 3b2a_A TON_1937, putative unch 96.3 0.13 4.5E-06 50.0 16.0 181 237-447 32-219 (265)
43 4fdd_A Transportin-1; heat rep 96.1 0.065 2.2E-06 58.9 14.8 197 210-427 108-304 (852)
44 3ltj_A Alpharep-4; protein eng 96.0 0.12 4.2E-06 46.0 13.4 123 237-407 75-197 (201)
45 3grl_A General vesicular trans 95.7 0.13 4.3E-06 56.3 14.4 154 257-425 38-212 (651)
46 4fdd_A Transportin-1; heat rep 95.6 0.29 1E-05 53.7 17.3 186 241-447 93-286 (852)
47 3grl_A General vesicular trans 95.2 0.078 2.7E-06 58.0 10.9 195 216-417 42-251 (651)
48 1oyz_A Hypothetical protein YI 95.0 0.65 2.2E-05 43.5 15.3 101 237-360 53-154 (280)
49 1oyz_A Hypothetical protein YI 94.8 0.7 2.4E-05 43.2 15.1 118 253-407 103-220 (280)
50 2vgl_B AP-2 complex subunit be 94.2 1.5 5E-05 46.5 17.3 183 242-447 125-312 (591)
51 1b3u_A Protein (protein phosph 94.0 0.99 3.4E-05 46.1 15.2 167 256-444 417-585 (588)
52 1b3u_A Protein (protein phosph 93.1 2.1 7.2E-05 43.6 15.8 96 253-364 99-194 (588)
53 1w63_A Adapter-related protein 92.8 0.51 1.7E-05 50.6 11.1 160 254-446 326-490 (618)
54 2qk2_A LP04448P; mini spindles 92.6 0.73 2.5E-05 42.6 10.5 113 237-367 97-210 (242)
55 2qk1_A Protein STU2; STU2P, XM 92.1 1.2 4.3E-05 42.1 11.6 165 237-414 59-226 (249)
56 1ibr_B P95, importin beta-1 su 91.5 5.2 0.00018 39.3 15.8 201 238-449 172-398 (462)
57 2bpt_A Importin beta-1 subunit 91.4 5.7 0.0002 42.6 17.3 143 254-409 108-254 (861)
58 1u6g_C TIP120 protein, CAND1; 91.4 0.81 2.8E-05 52.3 11.2 158 238-409 86-244 (1230)
59 3b2a_A TON_1937, putative unch 91.3 3.6 0.00012 40.0 13.8 134 253-410 87-220 (265)
60 2vgl_B AP-2 complex subunit be 91.2 1.4 4.9E-05 46.6 12.1 131 253-410 61-191 (591)
61 1te4_A Conserved protein MTH18 90.6 1.1 3.8E-05 37.5 8.6 85 294-404 45-129 (131)
62 2qk2_A LP04448P; mini spindles 90.3 3.5 0.00012 37.8 12.6 171 257-449 31-208 (242)
63 1w63_A Adapter-related protein 90.1 2.6 8.9E-05 45.0 13.1 92 255-367 121-212 (618)
64 2vgl_A Adaptor protein complex 90.1 1.1 3.6E-05 48.4 10.0 111 253-389 341-453 (621)
65 1u6g_C TIP120 protein, CAND1; 89.2 8 0.00027 44.1 16.9 142 253-408 18-163 (1230)
66 1ibr_B P95, importin beta-1 su 89.0 3.3 0.00011 40.7 11.9 115 292-409 129-247 (462)
67 1qgr_A Protein (importin beta 88.9 2 6.8E-05 46.3 11.1 138 256-409 343-480 (876)
68 1qgr_A Protein (importin beta 88.2 9.9 0.00034 40.8 16.0 160 238-409 259-438 (876)
69 2bpt_A Importin beta-1 subunit 87.6 4.1 0.00014 43.8 12.5 138 256-409 346-483 (861)
70 1te4_A Conserved protein MTH18 85.3 3.5 0.00012 34.3 8.4 86 241-360 45-130 (131)
71 2db0_A 253AA long hypothetical 84.2 2.4 8.1E-05 40.2 7.2 73 290-368 143-215 (253)
72 2qk1_A Protein STU2; STU2P, XM 80.3 2.7 9.2E-05 39.8 6.3 115 239-364 105-221 (249)
73 1wa5_C Importin alpha RE-expor 77.1 33 0.0011 38.2 14.8 157 255-427 472-646 (960)
74 2vgl_A Adaptor protein complex 74.8 22 0.00075 38.0 12.2 102 292-407 330-432 (621)
75 3ebb_A Phospholipase A2-activa 74.6 7.4 0.00025 38.4 7.8 117 292-410 148-265 (304)
76 4gmo_A Putative uncharacterize 72.4 29 0.001 37.4 12.6 147 254-409 47-215 (684)
77 4ffb_C Protein STU2; tubulin f 69.2 29 0.001 32.5 10.4 172 216-403 33-206 (278)
78 3dad_A FH1/FH2 domain-containi 69.0 19 0.00064 36.4 9.3 125 227-363 150-286 (339)
79 3dad_A FH1/FH2 domain-containi 67.4 27 0.00091 35.3 10.0 118 294-416 121-240 (339)
80 3gae_A Protein DOA1; UFD3, CDC 65.2 8.3 0.00028 37.0 5.7 165 258-440 71-252 (253)
81 2x19_B Importin-13; nuclear tr 63.4 54 0.0018 36.0 12.5 94 256-363 504-599 (963)
82 3gs3_A Symplekin, LD45768P; he 53.8 1.2E+02 0.0041 29.1 11.7 108 290-411 15-130 (257)
83 3ibv_A Exportin-T; karyopherin 52.2 43 0.0015 38.0 9.5 108 308-424 460-580 (980)
84 3tjz_B Coatomer subunit gamma; 49.6 1.8E+02 0.0062 29.0 12.7 89 292-386 140-236 (355)
85 4gmo_A Putative uncharacterize 49.5 23 0.00078 38.3 6.4 68 339-410 39-107 (684)
86 3pst_A Protein DOA1; protein d 48.1 89 0.003 32.4 10.2 163 258-440 243-424 (425)
87 3o2t_A Symplekin; heat repeat, 43.5 1.2E+02 0.0041 31.0 10.3 102 290-406 25-127 (386)
88 2x1g_F Cadmus; transport prote 40.2 1.1E+02 0.0037 33.8 10.2 110 303-425 476-587 (971)
89 3ibv_A Exportin-T; karyopherin 39.8 1.1E+02 0.0037 34.7 10.2 73 293-370 195-267 (980)
90 2of3_A ZYG-9; multifunctional 39.2 1.2E+02 0.004 29.3 9.1 95 255-370 146-244 (266)
91 2x19_B Importin-13; nuclear tr 38.9 85 0.0029 34.4 9.0 112 301-424 459-570 (963)
92 3l3f_X Protein DOA1, DOA1/UFD3 38.3 39 0.0013 34.3 5.7 168 248-440 174-361 (362)
93 1wa5_C Importin alpha RE-expor 36.3 4.7E+02 0.016 28.8 14.6 117 302-425 416-551 (960)
94 4ffb_C Protein STU2; tubulin f 33.3 76 0.0026 29.6 6.6 99 255-367 117-217 (278)
95 3tjz_B Coatomer subunit gamma; 31.0 4.1E+02 0.014 26.4 13.9 24 338-361 108-131 (355)
96 1x4q_A U4/U6 small nuclear rib 30.7 96 0.0033 25.2 5.9 65 333-410 20-84 (92)
97 3eg5_B Protein diaphanous homo 30.0 71 0.0024 32.2 6.1 73 293-365 164-248 (383)
98 2ezd_A High mobility group pro 20.5 78 0.0027 20.0 2.6 17 19-35 4-20 (26)
99 2lqh_B Forkhead box O3, FOXO3A 25.7 22 0.00074 25.4 0.0 8 7-14 26-33 (52)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.95 E-value=1.4e-08 Score=93.74 Aligned_cols=219 Identities=17% Similarity=0.166 Sum_probs=161.5
Q ss_pred hhhhhhcCCCCCc-cHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCc-cccccccCCcchhhhhcHHHHH
Q 012499 216 ASNIIRNFSFMPD-NEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPL-LDLRIFSSSKQSYIKITEKRAV 293 (462)
Q Consensus 216 ~s~ILRNLSf~p~-N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~-l~L~~~~~~~~~~i~i~~~~ll 293 (462)
+..+|+|++.... |...+.+. +.+..|+.++.+ .+.+++..++.++.|++.. -+... .+...-.+
T Consensus 22 a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~---------~~~~~~~i 88 (252)
T 4hxt_A 22 AARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTS---TDSEVQKEAARALANIASGPDEAIK---------AIVDAGGV 88 (252)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhC---CCHHHHHHHHHHHHHHHcCChHHHH---------HHHHCCCH
Confidence 5788889877665 77777765 557777767665 3468999999999999964 11110 11122346
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHhhc-CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHH
Q 012499 294 EAIMGILGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 372 (462)
Q Consensus 294 ~~l~~~L~S~Dr~~ii~aLE~L~kL~~-~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~i 372 (462)
..+..++.+++......|+.+|++|+. ++.+...+.. ...+..++++|..++..++..++.+|.+++......+..+
T Consensus 89 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 166 (252)
T 4hxt_A 89 EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 166 (252)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 778888899999999999999999994 4454443332 1278889999999999999999999999999877665555
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCchhhHHhh--HHHHHHHHh-cchhhHHHHHHHHHHHhcCC
Q 012499 373 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS-EPQNRVLLLAY--ENAFAEILF-SDGRYSDTFARILYELTSRP 448 (462)
Q Consensus 373 a~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~-~p~nr~~ll~~--E~~l~~i~~-sD~~~~~~~~~iL~~l~~~~ 448 (462)
. ..+.|..|+.++..+ ++++-+.|+.+|.+|+. .|+++..+... =+.|..+.- .|+.+...-..+|..+....
T Consensus 167 ~-~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 167 V-DAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp H-HTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred H-HCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 4 478999999999865 67889999999999998 55555555431 123333322 48888999999999998877
Q ss_pred CCcc
Q 012499 449 NNKV 452 (462)
Q Consensus 449 ~~~~ 452 (462)
.++.
T Consensus 244 ~~~~ 247 (252)
T 4hxt_A 244 WLEH 247 (252)
T ss_dssp BCCC
T ss_pred Cccc
Confidence 6653
No 2
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.83 E-value=4.7e-08 Score=91.15 Aligned_cols=177 Identities=19% Similarity=0.182 Sum_probs=132.8
Q ss_pred hhhhhhcCCC-CCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFSF-MPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLSf-~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
+..+|.|++. .++|...+.+. +.+..|+.++.+ .+.++++.++.+|.||+..-... ...+...-.+.
T Consensus 74 a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~--------~~~~~~~~~i~ 141 (252)
T 4db8_A 74 ALWALSNIASGGNEQIQAVIDA-GALPALVQLLSS---PNEQILQEALWALSNIASGGNEQ--------IQAVIDAGALP 141 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHT-THHHHHHHGGGC---SCHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHcC---CCHHHHHHHHHHHHHhhcCCchH--------HHHHHHCCCHH
Confidence 5788999998 67888777775 557777766655 34689999999999998532221 00111223567
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHhhcCC-CCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 295 AIMGILGSPFKAWHCAAAELLGRLIINP-DNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 295 ~l~~~L~S~Dr~~ii~aLE~L~kL~~~~-~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
.+..+|.+++......|+.+|++|+... .+...+.. ...+..++++|..++..++..++.+|.+++..+...+..+.
T Consensus 142 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 219 (252)
T 4db8_A 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK 219 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7888899999999999999999999754 22222211 12677899999999999999999999999987776655544
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 409 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~ 409 (462)
..+.|..|+.++..+ ++++-+.|+.+|.+|+++
T Consensus 220 -~~g~i~~L~~ll~~~--~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 220 -EAGALEKLEQLQSHE--NEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp -HTTHHHHHHTTTTCS--SSHHHHTHHHHHHTTC--
T ss_pred -HCCcHHHHHHHhCCC--CHHHHHHHHHHHHHHhcC
Confidence 568999999999876 578899999999999864
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.71 E-value=1.8e-07 Score=84.87 Aligned_cols=177 Identities=19% Similarity=0.177 Sum_probs=130.4
Q ss_pred hhhhhhcCCC-CCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFSF-MPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLSf-~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
+...|+|++. .+++...+.+. +.+..|+.++.+. ++++++.++-+++||+..-+-. .-.+...-.+.
T Consensus 32 a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~--------~~~i~~~g~i~ 99 (210)
T 4db6_A 32 ALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSP---NEQILQEALWALSNIASGGNEQ--------IQAVIDAGALP 99 (210)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHH--------HHHHHHCCCHH
Confidence 5888999985 45565666654 6677777777653 5589999999999998422110 00011111356
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHhhcCCC-CccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 295 AIMGILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 295 ~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~-Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
.+..+|.++|......|+.+|++|+.... +...+.. ...+..++++|..++.+++..++.+|.+++..+...+.. .
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~ 176 (210)
T 4db6_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA-V 176 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-H
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH--cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHH-H
Confidence 77888899999999999999999997432 2122211 127888999999999999999999999999987776544 4
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 409 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~ 409 (462)
...+.|..|+.++.++ ++++-+.|+.+|.+|+++
T Consensus 177 ~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 177 KEAGALEKLEQLQSHE--NEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHCC-
T ss_pred HHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHhcC
Confidence 5568999999999865 788999999999999864
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.69 E-value=1.2e-07 Score=87.37 Aligned_cols=182 Identities=19% Similarity=0.186 Sum_probs=137.5
Q ss_pred hhhhhhcCCCC-CccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLSf~-p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
+..+|.|++.. ++|...+.+. +.+..|+.++.+ .+.+++..++.++.|++..-+-. .-.+...-.+.
T Consensus 64 a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~--------~~~~~~~~~i~ 131 (252)
T 4hxt_A 64 AARALANIASGPDEAIKAIVDA-GGVEVLVKLLTS---TDSEVQKEAARALANIASGPDEA--------IKAIVDAGGVE 131 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTC---SSHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHH--------HHHHHHCCCHH
Confidence 58889999998 8888887765 446666666654 45689999999999999521110 00011123467
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHhhcCCC-CccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 295 AIMGILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 295 ~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~-Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
.|..++.+++......|+.+|++|+.... +...+.. ...+..++++|..++.+++..++.+|++++..+...+..+
T Consensus 132 ~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l- 208 (252)
T 4hxt_A 132 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAI- 208 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH-
Confidence 78888999999999999999999998532 2222222 2278889999999999999999999999998666654444
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchh
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRV 414 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~ 414 (462)
...+.|..|+.++..+ ++++-+.|+.+|.+|+..+.+..
T Consensus 209 ~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 209 VDAGGVEVLQKLLTST--DSEVQKEAQRALENIKSGGWLEH 247 (252)
T ss_dssp HHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHTCBCCC
T ss_pred HHCCCHHHHHHHHCCC--cHHHHHHHHHHHHHHHcCCCccc
Confidence 4578999999999866 67899999999999999887654
No 5
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.67 E-value=2.5e-07 Score=94.05 Aligned_cols=221 Identities=15% Similarity=0.132 Sum_probs=159.2
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcc---cC-----CChHHHHHHHHHHHHhhcCccccccccCCcchhhhh
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIED---HV-----TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKI 287 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~---~~-----~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i 287 (462)
++-.|.|+||.++|-..|.+.-. +..|+.++.. .+ ....+++.++.-+|.||+..-+- ....+
T Consensus 52 A~~aL~nls~d~e~R~~i~~~G~-l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~--------~k~~i 122 (354)
T 3nmw_A 52 AVCVLMKLSFDEEHRHAMNELGG-LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA--------NKATL 122 (354)
T ss_dssp HHHHHHHHHTSHHHHHHHHHTTH-HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH--------HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCC-HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH--------HHHHH
Confidence 68899999999999999999754 4444433321 00 12247999999999999853210 00011
Q ss_pred -cHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcC--CCCccccCCCchHHHHHHHHhc-CCcHHHHHHHHHHHHHHhhc
Q 012499 288 -TEKRAVEAIMGILGSPFKAWHCAAAELLGRLIIN--PDNEPFLLPFVPQIHKRLVDLM-SLPAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 288 -~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~--~~Ne~~ll~~~~~i~~rlv~lL-~l~D~~L~~~aLe~LY~Ls~ 363 (462)
...-....+...|.|++...+..|..+|..|+.. +.|...|.+. ..+..++++| ...+.++++.++.+|++|+.
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~--G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT--THHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 1123456778889999999999999999999986 3455554422 1577788864 45778999999999999999
Q ss_pred cCHHHHHHHhcchhHHHHHHHhhcCCCCC--hHHHHHHHHHHHHhhc----CCCchhhHHhhHH--HHHHHHh-cchhhH
Q 012499 364 VNVDCRLKLASERWAIDRLLRVIKTPHPV--PEVCRKAAMILESLVS----EPQNRVLLLAYEN--AFAEILF-SDGRYS 434 (462)
Q Consensus 364 ~~~~~~~~ia~~~~~V~~LV~ll~~~h~~--~em~rrAA~~L~~la~----~p~nr~~ll~~E~--~l~~i~~-sD~~~~ 434 (462)
.+.+.+..|....++|..||.++..+++. .++.+.|+.+|.+|+. .|+||..+....- .|.++.- .+.++-
T Consensus 201 ~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 280 (354)
T 3nmw_A 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280 (354)
T ss_dssp TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence 77777778887899999999999887543 2688999999999996 8999988764322 1222222 366677
Q ss_pred HHHHHHHHHHhcC
Q 012499 435 DTFARILYELTSR 447 (462)
Q Consensus 435 ~~~~~iL~~l~~~ 447 (462)
..-+.+|..|+.+
T Consensus 281 ~~A~~aL~nLa~~ 293 (354)
T 3nmw_A 281 SNACGTLWNLSAR 293 (354)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhCC
Confidence 7778888888854
No 6
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.66 E-value=1.9e-07 Score=94.89 Aligned_cols=224 Identities=19% Similarity=0.194 Sum_probs=163.0
Q ss_pred hhhhhhcCCCCCc-cHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFSFMPD-NEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLSf~p~-N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
++.+|+||++..+ |...+....+++..|+.++.+ .++++++++.-.|.||+..-+- . ....+-..-...
T Consensus 104 Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s---~~~~v~~~A~~aL~nLs~~~~~------~-~k~~i~~~G~Ip 173 (354)
T 3nmw_A 104 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS---ESEDLQQVIASVLRNLSWRADV------N-SKKTLREVGSVK 173 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHTTCCH------H-HHHHHHHTTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC---CCHHHHHHHHHHHHHHhccCCH------H-HHHHHHHCCCHH
Confidence 6899999999876 767777888888888877764 4568999999999999863100 0 000011111234
Q ss_pred HHHhh-hCCCCHHHHHHHHHHHHHhhc-CCCCccccCCCchHHHHHHHHhcCCcHH----HHHHHHHHHHHHhhc---cC
Q 012499 295 AIMGI-LGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAF----DAQAAAVGALYNLAE---VN 365 (462)
Q Consensus 295 ~l~~~-L~S~Dr~~ii~aLE~L~kL~~-~~~Ne~~ll~~~~~i~~rlv~lL~l~D~----~L~~~aLe~LY~Ls~---~~ 365 (462)
.|... +.+.+...+..|+.+|..|+. +++|...|.. ....+..++++|...+. ++++.+.-+|.+|+. .+
T Consensus 174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~-~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 252 (354)
T 3nmw_A 174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252 (354)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHH-hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence 55564 356778888899999999999 6677554431 12267778888876543 588999999999997 46
Q ss_pred HHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh-cCCCchhhHHhh--HHHHHHHHh-cchhhHHHHHHHH
Q 012499 366 VDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV-SEPQNRVLLLAY--ENAFAEILF-SDGRYSDTFARIL 441 (462)
Q Consensus 366 ~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la-~~p~nr~~ll~~--E~~l~~i~~-sD~~~~~~~~~iL 441 (462)
+..+. .....+.|..||.+|..+ +.++-+.|+.+|.+|+ ..|+|+..++.. -..|.++.- .|.++...-+..|
T Consensus 253 ~~~~~-~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 253 EDHRQ-ILRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp HHHHH-HHHTTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHH-HHHHcCCHHHHHHHHcCC--ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66544 445578999999999876 6788999999999999 578999888654 233333332 3888888899999
Q ss_pred HHHhcCCCCccc
Q 012499 442 YELTSRPNNKVA 453 (462)
Q Consensus 442 ~~l~~~~~~~~~ 453 (462)
..|+.+...|..
T Consensus 330 ~nL~~~~~~~~~ 341 (354)
T 3nmw_A 330 RNLMANRPAKYK 341 (354)
T ss_dssp HHHHTTCCGGGC
T ss_pred HHHHcCCHHHHh
Confidence 999999888854
No 7
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.64 E-value=6.9e-07 Score=81.03 Aligned_cols=190 Identities=16% Similarity=0.183 Sum_probs=136.3
Q ss_pred HHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhc
Q 012499 241 ETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLII 320 (462)
Q Consensus 241 ~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~ 320 (462)
..|..++++ +|.+++..++..|.|++..-+-. .-.+...-.+..+..+|.+++......|+.+|++|+.
T Consensus 15 ~~l~~LL~s---~~~~v~~~a~~~L~~l~~~~~~~--------~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 15 PQMVQQLNS---PDQQELQSALRKLSQIASGGNEQ--------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp HHHHHHTTC---SCHHHHHHHHHHHHHHHTSCHHH--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHHcCCHHH--------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 344444443 45689999999999998421100 0001111246778888999999999999999999995
Q ss_pred -CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHH
Q 012499 321 -NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKA 399 (462)
Q Consensus 321 -~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrA 399 (462)
++.|...+... ..+..++.+|..+|..++..++.+|.+++..+...+..+. ..+.|..|+.++..+ ++++.+.|
T Consensus 84 ~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~--~~~v~~~a 158 (210)
T 4db6_A 84 GGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSP--NEQILQEA 158 (210)
T ss_dssp SCHHHHHHHHHT--TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCS--CHHHHHHH
T ss_pred CCcHHHHHHHHC--CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCcHHHHHHHHcCC--CHHHHHHH
Confidence 34443333211 2677899999999999999999999999997776655554 568999999999876 67899999
Q ss_pred HHHHHHhhcC-CCchhhHHhhH--HHHHHHHh-cchhhHHHHHHHHHHHhc
Q 012499 400 AMILESLVSE-PQNRVLLLAYE--NAFAEILF-SDGRYSDTFARILYELTS 446 (462)
Q Consensus 400 A~~L~~la~~-p~nr~~ll~~E--~~l~~i~~-sD~~~~~~~~~iL~~l~~ 446 (462)
+.+|.+|+.. |+++..+.... +.|..+.- .|+.+...-+.+|-.|.+
T Consensus 159 ~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 159 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999998 77776664432 23333222 377888888888877754
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.63 E-value=1e-06 Score=81.98 Aligned_cols=212 Identities=16% Similarity=0.169 Sum_probs=146.6
Q ss_pred hhhhhc-CCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 217 SNIIRN-FSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 217 s~ILRN-LSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
...||| ++-.++|...+.+. +.+..|+.++.+. +.+++..++.+|.|++..-+-. .-.+...-.+..
T Consensus 33 ~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~--------~~~i~~~g~i~~ 100 (252)
T 4db8_A 33 TRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSP---NEQILQEALWALSNIASGGNEQ--------IQAVIDAGALPA 100 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCHHH--------HHHHHHcCCHHH
Confidence 444443 23356677777765 5577777666553 3579999999999999631110 000111124677
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhc
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS 374 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne-~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~ 374 (462)
+..+|.+++......|+.+|++|+..+.+. ..+... ..+..++++|..++..++..++.+|.+|+..+......+ .
T Consensus 101 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~ 177 (252)
T 4db8_A 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV-I 177 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH-H
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH-H
Confidence 888899999999999999999999887665 333221 278889999999999999999999999998876654444 3
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC-CCchhhHHhhH--HHHHHHHh-cchhhHHHHHHHHHHHh
Q 012499 375 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE-PQNRVLLLAYE--NAFAEILF-SDGRYSDTFARILYELT 445 (462)
Q Consensus 375 ~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~-p~nr~~ll~~E--~~l~~i~~-sD~~~~~~~~~iL~~l~ 445 (462)
..+.|..|+.++..+ ++++.+.|+.+|.+|+.. |+++..++... ..|..+.- .|+++...-+.+|..+.
T Consensus 178 ~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 178 DAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 468999999999876 688899999999999964 45555554221 11111111 26677676677766654
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.58 E-value=9.1e-07 Score=93.10 Aligned_cols=221 Identities=15% Similarity=0.133 Sum_probs=159.4
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcc---cC-----CChHHHHHHHHHHHHhhcCccccccccCCcchhhhh
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIED---HV-----TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKI 287 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~---~~-----~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i 287 (462)
++-.|.|+++.++|-..|.++-. +..|+.++.. .+ ....+++.++.-+|.||+..=+- ... .+
T Consensus 168 Av~aL~nls~~~e~R~~i~~~G~-l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~-------~k~-~i 238 (458)
T 3nmz_A 168 AVCVLMKLSFDEEHRHAMNELGG-LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-------NKA-TL 238 (458)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH-------HHH-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHCCC-HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc-------cHH-HH
Confidence 67889999999999999998644 5555444421 11 12247999999999999953210 000 01
Q ss_pred -cHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcC--CCCccccCCCchHHHHHHHHhc-CCcHHHHHHHHHHHHHHhhc
Q 012499 288 -TEKRAVEAIMGILGSPFKAWHCAAAELLGRLIIN--PDNEPFLLPFVPQIHKRLVDLM-SLPAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 288 -~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~--~~Ne~~ll~~~~~i~~rlv~lL-~l~D~~L~~~aLe~LY~Ls~ 363 (462)
...-.+..+...|.++|...+..|..+|+.|+.. +.|...|.+. ..+..+|++| ...+..+++.++.+|++|+.
T Consensus 239 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~--GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 239 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT--THHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc
Confidence 1123457778889999999999999999999985 3444444322 2677888975 45678999999999999999
Q ss_pred cCHHHHHHHhcchhHHHHHHHhhcCCCCC--hHHHHHHHHHHHHhhc----CCCchhhHHhhHH--HHHHHHh-cchhhH
Q 012499 364 VNVDCRLKLASERWAIDRLLRVIKTPHPV--PEVCRKAAMILESLVS----EPQNRVLLLAYEN--AFAEILF-SDGRYS 434 (462)
Q Consensus 364 ~~~~~~~~ia~~~~~V~~LV~ll~~~h~~--~em~rrAA~~L~~la~----~p~nr~~ll~~E~--~l~~i~~-sD~~~~ 434 (462)
.+.+.+..|+...++|..||.+|..+++. .++.+.|+.+|.+|+. .|+||..+....- .|..+.- .+..+.
T Consensus 317 ~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~ 396 (458)
T 3nmz_A 317 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 396 (458)
T ss_dssp HCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHH
T ss_pred CCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHH
Confidence 77677778887899999999999887543 2688999999999995 8999988764322 2222222 266777
Q ss_pred HHHHHHHHHHhcC
Q 012499 435 DTFARILYELTSR 447 (462)
Q Consensus 435 ~~~~~iL~~l~~~ 447 (462)
..-+.+|..|+.+
T Consensus 397 ~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 397 SNACGTLWNLSAR 409 (458)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHcC
Confidence 7888888888854
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.56 E-value=4.7e-07 Score=95.31 Aligned_cols=224 Identities=18% Similarity=0.185 Sum_probs=162.3
Q ss_pred hhhhhhhcCCCCCc-cHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHH
Q 012499 215 GASNIIRNFSFMPD-NEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAV 293 (462)
Q Consensus 215 ~~s~ILRNLSf~p~-N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll 293 (462)
+++.+|+||++..+ |...+....+++..|+.++.+ .++++++++.-.|.||+..-+-. ....+-+.-.+
T Consensus 219 ~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s---~~~~v~~~A~~aL~nLs~~~~~~-------~k~~I~~~GaI 288 (458)
T 3nmz_A 219 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS---ESEDLQQVIASVLRNLSWRADVN-------SKKTLREVGSV 288 (458)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHTSSCCHH-------HHHHHHHTTHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCHH-------HHHHHHHcCCH
Confidence 36899999999876 555666788888888777764 45689999999999998631100 00011111124
Q ss_pred HHHHhh-hCCCCHHHHHHHHHHHHHhhc-CCCCccccCCCchHHHHHHHHhcCCcHH----HHHHHHHHHHHHhhc---c
Q 012499 294 EAIMGI-LGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAF----DAQAAAVGALYNLAE---V 364 (462)
Q Consensus 294 ~~l~~~-L~S~Dr~~ii~aLE~L~kL~~-~~~Ne~~ll~~~~~i~~rlv~lL~l~D~----~L~~~aLe~LY~Ls~---~ 364 (462)
..|..+ +.+.+...+..|+.+|.+|+. +++|...|... ...+.-++++|...+. ++++.+.-+|.+|+. .
T Consensus 289 ~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~-~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV-DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHS-TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHh-cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 556665 456788888999999999999 77776555311 2266778888876543 588999999999997 4
Q ss_pred CHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh-cCCCchhhHHhhH--HHHHHHH-hcchhhHHHHHHH
Q 012499 365 NVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV-SEPQNRVLLLAYE--NAFAEIL-FSDGRYSDTFARI 440 (462)
Q Consensus 365 ~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la-~~p~nr~~ll~~E--~~l~~i~-~sD~~~~~~~~~i 440 (462)
+...+ ......+.|..||.+|..+ +.++-+.|+.+|.+|+ ..|+|+..++..- ..|.++. -.|.++...-+..
T Consensus 368 ~~~~~-~~i~~~G~i~~Lv~LL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~A 444 (458)
T 3nmz_A 368 NEDHR-QILRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 444 (458)
T ss_dssp CHHHH-HHHHHTTHHHHHHHHSSCS--CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred CHHHH-HHHHHcccHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 55554 4445677899999999876 6788999999999999 5799999886642 3333332 2388888999999
Q ss_pred HHHHhcCCCCcc
Q 012499 441 LYELTSRPNNKV 452 (462)
Q Consensus 441 L~~l~~~~~~~~ 452 (462)
|..|..+...|.
T Consensus 445 L~nL~~~~p~ky 456 (458)
T 3nmz_A 445 LRNLMANRPAKY 456 (458)
T ss_dssp HHHHHTCCSCC-
T ss_pred HHHHHcCCHhhh
Confidence 999998877774
No 11
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.55 E-value=3.3e-06 Score=90.71 Aligned_cols=277 Identities=13% Similarity=0.132 Sum_probs=190.9
Q ss_pred cHHHHHHHHhcCCchhHHHHHHHHHHhhcccccccccCCCCCCCcccHHHHHHHhhhhhhhccccccccCCCcccccccc
Q 012499 64 NHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVN 143 (462)
Q Consensus 64 ny~Rl~LSL~SGLpnEvdfALN~LtlLS~e~k~~~r~d~~pL~~~PgLLdaLl~v~~d~~di~~~~~~~~~~~~R~Lg~~ 143 (462)
-...|+.-|.++-|.-...|+..|..|+.+...... +...++.+..|+....+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~-----i~~~~~~i~~Lv~~L~~---------------------- 67 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA-----IMRSPQMVSAIVRTMQN---------------------- 67 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHH-----HTTCHHHHHHHHHHHHS----------------------
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHH-----HHhccChHHHHHHHHhc----------------------
Confidence 377888888899999999999999999987654322 44567777887755421
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCcchhhhhhhhhhhhccCcccccccCCCCCCChHHHHHHHHhhhhhhhhhhcC
Q 012499 144 SLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNF 223 (462)
Q Consensus 144 s~~~~~~~~~~~~~~~d~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~Lf~~d~e~~~~~qr~a~~~s~ILRNL 223 (462)
..+ .+ .|+ +++.+|+||
T Consensus 68 --------------~~~------------------------------------------~~----~~~---~A~~~L~~L 84 (644)
T 2z6h_A 68 --------------TND------------------------------------------VE----TAR---CTAGTLHNL 84 (644)
T ss_dssp --------------CCC------------------------------------------HH----HHH---HHHHHHHHH
T ss_pred --------------CCC------------------------------------------HH----HHH---HHHHHHHHH
Confidence 000 00 122 247788999
Q ss_pred CCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCC
Q 012499 224 SFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSP 303 (462)
Q Consensus 224 Sf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~ 303 (462)
+..++|...+.+. +.+..|+.++.+ .+++++.+++.+|.||+..-+-. .-.+-..-.+..+..+|.+.
T Consensus 85 s~~~~~~~~i~~~-g~i~~Lv~lL~~---~~~~v~~~A~~aL~nL~~~~~~~--------~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 85 SHHREGLLAIFKS-GGIPALVKMLGS---PVDSVLFYAITTLHNLLLHQEGA--------KMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp TTSHHHHHHHHTT-THHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHSTTH--------HHHHHHTTHHHHHHHGGGCC
T ss_pred hcChhhHHHHHHc-CCHHHHHHHHhC---CCHHHHHHHHHHHHHHHhCcchh--------HHHHHHCCChHHHHHHHCcC
Confidence 9999999999987 677777777655 34689999999999998642110 00011122456778888888
Q ss_pred CHHHHHHHHHHHHHhhc-CCCCccccCCCchHHHHHHHHhcCCc-HHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHH
Q 012499 304 FKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLP-AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDR 381 (462)
Q Consensus 304 Dr~~ii~aLE~L~kL~~-~~~Ne~~ll~~~~~i~~rlv~lL~l~-D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~ 381 (462)
+......++++|++|+. ++.|...+... ..+..++++|... +..++..++.+|.+|+.- ...+..+. ..+.|..
T Consensus 153 ~~~~~~~a~~~L~~La~~~~~~~~~i~~~--g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~-~~g~l~~ 228 (644)
T 2z6h_A 153 NVKFLAITTDCLQILAYGNQESKLIILAS--GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIV-EAGGMQA 228 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHH-HTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHHHHHc--CChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHH-HCCCHHH
Confidence 77777888999999996 44444433322 2566777888654 357889999999999963 33444443 4579999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHHh-cchhhHHHHHHHHHHHhcCC
Q 012499 382 LLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILF-SDGRYSDTFARILYELTSRP 448 (462)
Q Consensus 382 LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~~-sD~~~~~~~~~iL~~l~~~~ 448 (462)
|+.++..+ ++++.+.|+.+|.+|++.+.+....-..-..|..+.- .|+.+....+.+|..|+.+.
T Consensus 229 L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 229 LGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999876 5789999999999999887543222222222333222 47788888888888887754
No 12
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.53 E-value=1.1e-06 Score=90.16 Aligned_cols=217 Identities=15% Similarity=0.174 Sum_probs=159.5
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
++.+|.|++..++|...+.++++.+..|+.++... .+.+++..+..+|.+++..-+.. . .+-..-.+..
T Consensus 37 A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~~ls~~~~~~--------~-~i~~~g~i~~ 105 (529)
T 1jdh_A 37 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGL--------L-AIFKSGGIPA 105 (529)
T ss_dssp HHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSHHHH--------H-HHHHTTHHHH
T ss_pred HHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCchhH--------H-HHHHcCCHHH
Confidence 58889999998888888888888888887766543 35579999999999988642211 0 1111224567
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhc
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS 374 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne-~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~ 374 (462)
+..+|.++|...+..|+++|.+|+..+.+. ..+.. ...+..++.+|..++...+..+..+|.+++..+...+..+..
T Consensus 106 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~ 183 (529)
T 1jdh_A 106 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183 (529)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH--HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH--cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 788899999999999999999999986442 22211 126788999999888999999999999999987887776665
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHH-h---cchhhHHHHHHHHHHHhcCC
Q 012499 375 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL-F---SDGRYSDTFARILYELTSRP 448 (462)
Q Consensus 375 ~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~-~---sD~~~~~~~~~iL~~l~~~~ 448 (462)
. +.|..|+.++..+. ..+....|+..|.+|+..|+|+..++... .+..+. + .|+.+....+.+|..|++..
T Consensus 184 ~-~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g-~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 184 S-GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAG-GMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp T-THHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTT-HHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred C-CCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCC-CHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence 4 78999999998764 24455667888999999999999887533 221111 1 25666667777777777654
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.52 E-value=1.6e-06 Score=93.10 Aligned_cols=218 Identities=16% Similarity=0.179 Sum_probs=164.3
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
++.+|.|++....|...+..++.++..|+..+... .+.+.+..+..+|.+++..-+... .+-..-.+..
T Consensus 34 A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~~Ls~~~~~~~---------~i~~~g~i~~ 102 (644)
T 2z6h_A 34 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGLL---------AIFKSGGIPA 102 (644)
T ss_dssp HHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHTTSHHHHH---------HHHTTTHHHH
T ss_pred HHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcChhhHH---------HHHHcCCHHH
Confidence 58899999999999888888888888887776543 356799999999999987533110 0111124577
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcCCCC-ccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhc
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIINPDN-EPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS 374 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~N-e~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~ 374 (462)
+..+|.++|...+..|+++|.+|+..+.+ ...+.. ...+..++++|..++..++..++.+|.+++..+...+..+..
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~ 180 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 180 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH--TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH--CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 78889999999999999999999987532 222211 126788999998888899999999999999877777766654
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhH--HHHHHHH-hcchhhHHHHHHHHHHHhcCC
Q 012499 375 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYE--NAFAEIL-FSDGRYSDTFARILYELTSRP 448 (462)
Q Consensus 375 ~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E--~~l~~i~-~sD~~~~~~~~~iL~~l~~~~ 448 (462)
. +.|..|+.++..+. ..+....|+..|.+|+..|+||..++... ..|..+. -.|+++....+.+|..|++..
T Consensus 181 ~-g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 181 S-GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp T-THHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred c-CChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc
Confidence 4 78999999998764 35567789999999999999999887542 1122211 137788888888998888754
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.46 E-value=7.1e-06 Score=84.15 Aligned_cols=277 Identities=13% Similarity=0.125 Sum_probs=187.4
Q ss_pred cHHHHHHHHhcCCchhHHHHHHHHHHhhcccccccccCCCCCCCcccHHHHHHHhhhhhhhccccccccCCCcccccccc
Q 012499 64 NHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVN 143 (462)
Q Consensus 64 ny~Rl~LSL~SGLpnEvdfALN~LtlLS~e~k~~~r~d~~pL~~~PgLLdaLl~v~~d~~di~~~~~~~~~~~~R~Lg~~ 143 (462)
-...++.-|.++-+.-...|+..|..++.+...... +...++.++.|+.....-
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~-----~~~~~~~i~~Lv~~L~~~--------------------- 71 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA-----IMRSPQMVSAIVRTMQNT--------------------- 71 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHH-----HHTCHHHHHHHHHHHHHC---------------------
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHH-----HHhCcchHHHHHHHHhcC---------------------
Confidence 377888888899999999999999999976543222 334567777776543210
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCcchhhhhhhhhhhhccCcccccccCCCCCCChHHHHHHHHhhhhhhhhhhcC
Q 012499 144 SLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNF 223 (462)
Q Consensus 144 s~~~~~~~~~~~~~~~d~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~Lf~~d~e~~~~~qr~a~~~s~ILRNL 223 (462)
.| .+ .|+ .++..|+||
T Consensus 72 ---------------~~------------------------------------------~~----~~~---~a~~~L~~l 87 (529)
T 1jdh_A 72 ---------------ND------------------------------------------VE----TAR---CTAGTLHNL 87 (529)
T ss_dssp ---------------CC------------------------------------------HH----HHH---HHHHHHHHH
T ss_pred ---------------CC------------------------------------------HH----HHH---HHHHHHHHH
Confidence 00 00 122 257889999
Q ss_pred CCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCC
Q 012499 224 SFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSP 303 (462)
Q Consensus 224 Sf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~ 303 (462)
+..++|...+.+. +.+..|+.++.+ .+++++.+++.++.|++..-+-. .. .+-..-.+..+...+.++
T Consensus 88 s~~~~~~~~i~~~-g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~-------~~-~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 88 SHHREGLLAIFKS-GGIPALVKMLGS---PVDSVLFYAITTLHNLLLHQEGA-------KM-AVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp TTSHHHHHHHHHT-THHHHHHHHTTC---SCHHHHHHHHHHHHHHHHHCTTH-------HH-HHHHHTHHHHHHHGGGCC
T ss_pred HcCchhHHHHHHc-CCHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCcch-------HH-HHHHcCCHHHHHHHHhcC
Confidence 9999999999987 667777777655 34689999999999998632110 00 011123456778888888
Q ss_pred CHHHHHHHHHHHHHhhcC-CCCccccCCCchHHHHHHHHhcCC-cHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHH
Q 012499 304 FKAWHCAAAELLGRLIIN-PDNEPFLLPFVPQIHKRLVDLMSL-PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDR 381 (462)
Q Consensus 304 Dr~~ii~aLE~L~kL~~~-~~Ne~~ll~~~~~i~~rlv~lL~l-~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~ 381 (462)
+......+.++|+.|+.. +.|...+... ..+..++++|.. .+...+..+..+|.+|+.- ...+..+. ..+.|..
T Consensus 156 ~~~~~~~~~~~L~~la~~~~~~~~~i~~~--~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~-~~g~~~~ 231 (529)
T 1jdh_A 156 NVKFLAITTDCLQILAYGNQESKLIILAS--GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIV-EAGGMQA 231 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHH-HTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHH-HCCCHHH
Confidence 877778888999999873 3333333221 145556666643 3457888899999999974 33444444 4579999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHHh-cchhhHHHHHHHHHHHhcCC
Q 012499 382 LLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILF-SDGRYSDTFARILYELTSRP 448 (462)
Q Consensus 382 LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~~-sD~~~~~~~~~iL~~l~~~~ 448 (462)
|+.+++.+ ++++.+.|+.+|.+|++.+.+....-..-+.|..+.- .|+.+....+.+|..|+.+.
T Consensus 232 L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 232 LGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp HHTTTTSS--CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhCC--ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 99999876 6889999999999999987554322222233333332 37888888888888887753
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.37 E-value=3.2e-06 Score=91.54 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=130.5
Q ss_pred CcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcC-ccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 012499 236 HRHCLETVFQCIEDHVTEDEELVTNALETIVNLAP-LLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAEL 314 (462)
Q Consensus 236 ~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~-~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~ 314 (462)
|+..++.|+.++... ...++++++.-+|.|++. ....... ... .+-....+..|..+|.+++...+..|..+
T Consensus 306 ~~~~v~~Ll~LL~~s--~~~~v~E~Aa~AL~nL~ag~~~~~~~---~~~--~v~~~~glp~Lv~LL~s~~~~v~~~A~~a 378 (584)
T 3l6x_A 306 QPEVVRIYISLLKES--KTPAILEASAGAIQNLCAGRWTYGRY---IRS--ALRQEKALSAIADLLTNEHERVVKAASGA 378 (584)
T ss_dssp SHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHSSCSHHHHH---HHH--HHTSHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCccccHH---HHH--HHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 345556666555433 234799999999999963 2111100 000 01112346788899999999999999999
Q ss_pred HHHhhcCCCCccccCCCchHHHHHHHHhcCCc--------HHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhh
Q 012499 315 LGRLIINPDNEPFLLPFVPQIHKRLVDLMSLP--------AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVI 386 (462)
Q Consensus 315 L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~--------D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll 386 (462)
|++|+....|...| -...+.++|++|... ..+++..++-.|.+++..+...+..|. ..++|..||.++
T Consensus 379 L~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~-~~g~I~~Lv~LL 454 (584)
T 3l6x_A 379 LRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR-ETQGIEKLVLIN 454 (584)
T ss_dssp HHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHH
Confidence 99999999988766 234889999999875 367889999999999988877766665 668999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCchhhHHhh
Q 012499 387 KTPHPVPEVCRKAAMILESLVSEPQNRVLLLAY 419 (462)
Q Consensus 387 ~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~ 419 (462)
..++..+.+.|-||..|.+|..++++|..|...
T Consensus 455 ~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~ 487 (584)
T 3l6x_A 455 KSGNRSEKEVRAAALVLQTIWGYKELRKPLEKE 487 (584)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTT
T ss_pred hCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHc
Confidence 886555778999999999999999999888663
No 16
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.35 E-value=4.3e-06 Score=92.72 Aligned_cols=218 Identities=16% Similarity=0.184 Sum_probs=159.0
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
++.+|.|++-..+|...+...+.++..|+..+... ++.+.+.++..+|.+++..-+-. ..+-..-.+..
T Consensus 170 A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~~Ls~~~~~~---------~~i~~~g~I~~ 238 (780)
T 2z6g_A 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLHNLSHHREGL---------LAIFKSGGIPA 238 (780)
T ss_dssp HHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTSHHHH---------HHHHHTTHHHH
T ss_pred HHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCchhH---------HHHHHcCCHHH
Confidence 57788888888888888888888899887776543 35689999999999988642111 00111234677
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhc
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS 374 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne-~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~ 374 (462)
|+.+|.+++...+..|+.+|.+||....+. ..+.. ...+..++.+|..++..++..++++|..++..+...+..+..
T Consensus 239 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~--~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~ 316 (780)
T 2z6g_A 239 LVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 316 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH--TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH--cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 888899999999999999999999885432 22211 126778899998888899999999999999877888777665
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhH--HHHHHHHh-cchhhHHHHHHHHHHHhcCC
Q 012499 375 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYE--NAFAEILF-SDGRYSDTFARILYELTSRP 448 (462)
Q Consensus 375 ~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E--~~l~~i~~-sD~~~~~~~~~iL~~l~~~~ 448 (462)
. +.|..||.++..+. .......|+.+|.+|+..++|+..++... ..|..+.- .|+.+....+.+|..|++..
T Consensus 317 ~-~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 317 S-GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp T-THHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred c-CCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 4 68999999998773 23345568899999999999998876532 12222111 25566666677777776654
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.28 E-value=2e-05 Score=81.74 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=149.8
Q ss_pred hhhhhhcCCCC-CccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLSf~-p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
++.+|.|++.. ++|...+.++ +.+..|+.++.+ .+.++++.++.+|+||+..-.- ..-.+...-.+.
T Consensus 138 A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~---~~~~v~~~a~~aL~~l~~~~~~--------~~~~i~~~g~l~ 205 (528)
T 4b8j_A 138 AAWALTNIASGTSENTKVVIDH-GAVPIFVKLLGS---SSDDVREQAVWALGNVAGDSPK--------CRDLVLANGALL 205 (528)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC---SCHHHHHHHHHHHHHHHHTCHH--------HHHHHHHTTCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHhC-CcHHHHHHHhcC---CCHHHHHHHHHHHHHHhCCChh--------hHHHHHHCCcHH
Confidence 47778888875 6777777776 557777766655 3458999999999999852110 000011112356
Q ss_pred HHHhhh-CCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 295 AIMGIL-GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 295 ~l~~~L-~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
.|+.+| .+.+......|+.+|++||....+.... ....++..++.+|..+|.+++..++.+|.+++.........+
T Consensus 206 ~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~--~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~- 282 (528)
T 4b8j_A 206 PLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE--QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAV- 282 (528)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH--HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHH-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH-
Confidence 677777 6778889999999999999986443322 123478889999999999999999999999998766554333
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC-CchhhHHhhH--HHHHHH-Hhc-chhhHHHHHHHHHHHhcC
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP-QNRVLLLAYE--NAFAEI-LFS-DGRYSDTFARILYELTSR 447 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p-~nr~~ll~~E--~~l~~i-~~s-D~~~~~~~~~iL~~l~~~ 447 (462)
...+.|..|+.++.++ ++++...|+.+|.+|+... +++..++... ..|..+ .-. ++.+....+.+|..++.+
T Consensus 283 ~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 283 IEAGVCPRLVELLLHP--SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCHHHHHHHHHcCC--ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 3458999999999877 5788899999999999854 3343333211 122222 223 567777777778877764
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.27 E-value=8.4e-06 Score=84.56 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=115.9
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCcc-ccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHH
Q 012499 294 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEP-FLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 372 (462)
Q Consensus 294 ~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~-~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~i 372 (462)
..+..+|.|+|...+..|..+|.+||..+.+.. .+... ..+..++++|..++.+++..+..+|.+|+..+.+.+..|
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT--THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 456778888999999999999999997654422 33321 268889999999999999999999999999777776666
Q ss_pred hcchhHHHHHHHhhc-CCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHH-h-------------------cch
Q 012499 373 ASERWAIDRLLRVIK-TPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL-F-------------------SDG 431 (462)
Q Consensus 373 a~~~~~V~~LV~ll~-~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~-~-------------------sD~ 431 (462)
. ..|+|..||.+|. .+ ++++.+.|+.+|.+|+..++||..++. ..+..+. + .|.
T Consensus 83 ~-~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 83 R-RQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp H-HTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred H-HcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccH
Confidence 5 4589999999998 55 678999999999999999999998764 3322221 1 133
Q ss_pred hhHHHHHHHHHHHhcCCCCc
Q 012499 432 RYSDTFARILYELTSRPNNK 451 (462)
Q Consensus 432 ~~~~~~~~iL~~l~~~~~~~ 451 (462)
.+...-+.+|+.|++.+.++
T Consensus 158 ~v~~~a~~aL~nLs~~~~~~ 177 (457)
T 1xm9_A 158 EVFFNATGCLRNLSSADAGR 177 (457)
T ss_dssp HHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHccCHHHH
Confidence 44446778888888765444
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.25 E-value=7.6e-06 Score=84.87 Aligned_cols=180 Identities=19% Similarity=0.151 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcC-CCCccccCCCc
Q 012499 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIIN-PDNEPFLLPFV 332 (462)
Q Consensus 254 d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~-~~Ne~~ll~~~ 332 (462)
+.+++.++...+.|++..- .+....+-..-.+..+..+|.+++...+..|..+|.+|+.. +.|...|.+.
T Consensus 15 ~~~~q~~A~~~L~~l~~~~--------~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~- 85 (457)
T 1xm9_A 15 DEKYQAIGAYYIQHTCFQD--------ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ- 85 (457)
T ss_dssp CTHHHHHHHHHHHHHTSSC--------SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHcCC--------hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-
Confidence 4479999999999998421 11110111122356677889999999999999999999985 6666555322
Q ss_pred hHHHHHHHHhcC-CcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcC--------C------CCChHHHH
Q 012499 333 PQIHKRLVDLMS-LPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKT--------P------HPVPEVCR 397 (462)
Q Consensus 333 ~~i~~rlv~lL~-l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~--------~------h~~~em~r 397 (462)
..+..++++|. ..+.++++.+..+|++|+.. +..+..|.. ++|..||.++.. + +..++|.|
T Consensus 86 -G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 86 -NGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp -TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred -CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 14667888998 78899999999999999987 556666765 999999999932 2 13467899
Q ss_pred HHHHHHHHhhcCCCchhhHHhhHHH---HHHHHh-------cchhhHHHHHHHHHHHhc
Q 012499 398 KAAMILESLVSEPQNRVLLLAYENA---FAEILF-------SDGRYSDTFARILYELTS 446 (462)
Q Consensus 398 rAA~~L~~la~~p~nr~~ll~~E~~---l~~i~~-------sD~~~~~~~~~iL~~l~~ 446 (462)
.|+.+|.+|++.|+||..+...|.. |..+.- .|.++.+.-..+|..|+.
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~ 220 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhccc
Confidence 9999999999999999998865333 333222 245655555566666653
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.22 E-value=3.5e-05 Score=77.11 Aligned_cols=216 Identities=14% Similarity=0.093 Sum_probs=145.7
Q ss_pred hhhhhhcCCCCC-ccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFSFMP-DNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLSf~p-~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
++.+|.|++... ++...+.+ ..++..|+.++... .+.+++..++.+++||+..-+-.. .. .. + ..++.
T Consensus 127 a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~--~~~~v~~~a~~~L~~l~~~~~~~~---~~-~~--~--~~~l~ 195 (450)
T 2jdq_A 127 AVWALGNIAGDSTMCRDYVLD-CNILPPLLQLFSKQ--NRLTMTRNAVWALSNLCRGKSPPP---EF-AK--V--SPCLN 195 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTTSC--CCHHHHHHHHHHHHHHHCCSSSCC---CG-GG--T--GGGHH
T ss_pred HHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCCCCCC---CH-HH--H--HHHHH
Confidence 467778877764 34444444 45677777666542 345799999999999996431110 00 00 1 22456
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHhhcCCC-CccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 295 AIMGILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 295 ~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~-Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
.+...+.+.|......++.+|++|+.... +...+.. ..++..++.+|..++..++..++.+|.+++......+..+.
T Consensus 196 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 273 (450)
T 2jdq_A 196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID--AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVIL 273 (450)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHH--TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHH--cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHH
Confidence 77788889999999999999999997542 2111110 12677888999989999999999999999998776655444
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC-CCchhhHHh--hHHHHHH-HHhcchhhHHHHHHHHHHHhcC
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE-PQNRVLLLA--YENAFAE-ILFSDGRYSDTFARILYELTSR 447 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~-p~nr~~ll~--~E~~l~~-i~~sD~~~~~~~~~iL~~l~~~ 447 (462)
..+.+..|+.+++++ ++++-+.|+.+|.+|+.. ++++..++. .=+.|.. +.-.|+++....+.+|..+..+
T Consensus 274 -~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 274 -NCSALQSLLHLLSSP--KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp -TTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred -HCccHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 347999999999875 678889999999999974 444443331 1112222 2224677777777777777654
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.21 E-value=2.6e-05 Score=87.42 Aligned_cols=200 Identities=18% Similarity=0.158 Sum_probs=135.9
Q ss_pred HHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHH
Q 012499 231 VIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCA 310 (462)
Q Consensus 231 ~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~ 310 (462)
+.+.+. +.+..|+.++.+ .++++++++.-++.|||..-+.+. .+-..-.+..|...|.+.+......
T Consensus 489 ~~Vvea-GaVp~LV~LL~s---~s~~vqe~Aa~aL~NLA~d~~~r~---------~Vv~~Gaip~Lv~LL~s~~~~~k~~ 555 (810)
T 3now_A 489 TVLANE-GITTALCALAKT---ESHNSQELIARVLNAVCGLKELRG---------KVVQEGGVKALLRMALEGTEKGKRH 555 (810)
T ss_dssp HHHHHT-THHHHHHHHHTC---CCHHHHHHHHHHHHHHHTSHHHHH---------HHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHC-cCHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHH---------HHHHCCCHHHHHHHHccCCHHHHHH
Confidence 344444 567777666654 335799999999999997433221 1222223556677777888788899
Q ss_pred HHHHHHHhhcCCCCccccCC-CchHHHHHHHHhcCCc-HHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcC
Q 012499 311 AAELLGRLIINPDNEPFLLP-FVPQIHKRLVDLMSLP-AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKT 388 (462)
Q Consensus 311 aLE~L~kL~~~~~Ne~~ll~-~~~~i~~rlv~lL~l~-D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~ 388 (462)
|..+|++||...++...+.. ..-..+..++++|... +......++-+|++|+..++..+.+|.. .+.+..|+.|+.+
T Consensus 556 Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s 634 (810)
T 3now_A 556 ATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLME 634 (810)
T ss_dssp HHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcC
Confidence 99999999987655443322 1122678889998744 2334457899999999998888777765 4789999999997
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHH-Hh---cchhhHHHHHHHHHHHhc
Q 012499 389 PHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEI-LF---SDGRYSDTFARILYELTS 446 (462)
Q Consensus 389 ~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i-~~---sD~~~~~~~~~iL~~l~~ 446 (462)
++ +.+-+-|+.+|.+|+..|+++..++.-..++..+ .+ .|..+...-+..|.-+++
T Consensus 635 ~~--~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 635 DH--LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp CC--TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 74 5667889999999999999998887201222221 12 255555555566666655
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.20 E-value=2.3e-05 Score=81.33 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=148.9
Q ss_pred hhhhhhcCCCC-CccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLSf~-p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
++..|.|++.. +.+...+.++ +++..|+.++..+ .+.+++.++..+|.|++..-.-. .. ......+.
T Consensus 180 a~~aL~~l~~~~~~~~~~i~~~-g~l~~Ll~lL~~~--~~~~v~~~a~~~L~~L~~~~~~~-------~~--~~~~~~l~ 247 (528)
T 4b8j_A 180 AVWALGNVAGDSPKCRDLVLAN-GALLPLLAQLNEH--TKLSMLRNATWTLSNFCRGKPQP-------SF--EQTRPALP 247 (528)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCSSSCC-------CH--HHHTTHHH
T ss_pred HHHHHHHHhCCChhhHHHHHHC-CcHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCC-------cH--HHHHHHHH
Confidence 46677777755 4455555554 5566666666433 34579999999999998753111 01 11123567
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCch-HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 295 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP-QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 295 ~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~-~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
.|...|.+.|......|+.+|++|+....+. +..... .++..++.+|..++..++..++.+|.+++.........+.
T Consensus 248 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~--~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 325 (528)
T 4b8j_A 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDK--IQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII 325 (528)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSCHHH--HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH--HHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7888899999999999999999999764432 111111 2678899999999999999999999999997766655444
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC-chhhHHhh--HHHHHH-HHhcchhhHHHHHHHHHHHhcC
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ-NRVLLLAY--ENAFAE-ILFSDGRYSDTFARILYELTSR 447 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~-nr~~ll~~--E~~l~~-i~~sD~~~~~~~~~iL~~l~~~ 447 (462)
..+.+..|+.++.+++ ++++-+.|+.+|.+|+.... ....++.. =+.|.. +.-.|..+....+..|..+...
T Consensus 326 -~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 326 -DHQALPCLLSLLTQNL-KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp -TTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred -HhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 4789999999998663 57889999999999997532 33333211 122222 2234777777777777777665
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.18 E-value=2.8e-05 Score=81.02 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=150.1
Q ss_pred hhhhhhcCCCC-CccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLSf~-p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
++..|.|++.. +++...+..+ +++..|+.++.+ .+.+++..++.+|.|++..-+-. . .. .....++.
T Consensus 193 A~~aL~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~-----~-~~--~~~~~~l~ 260 (530)
T 1wa5_B 193 AIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQ-----P-DW--SVVSQALP 260 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCSSSC-----C-CH--HHHGGGHH
T ss_pred HHHHHHHHhCCCccchHHHHHc-CcHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCCC-----C-cH--HHHHhHHH
Confidence 57778888765 4566666654 567777766655 45679999999999999643111 0 01 11123467
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCch-HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 295 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP-QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 295 ~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~-~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
.+...+.+.|......|+.+|+.|+..... .+..... .++..++.+|..++..++..++.+|.+++.........+.
T Consensus 261 ~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~--~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 338 (530)
T 1wa5_B 261 TLAKLIYSMDTETLVDACWAISYLSDGPQE--AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI 338 (530)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHSSCHH--HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCHH--HHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 778888899999999999999999975321 1111122 2678899999989999999999999999987766554443
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC-CCchhhHHh--hHHHHHH-HHhcchhhHHHHHHHHHHHhcC
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE-PQNRVLLLA--YENAFAE-ILFSDGRYSDTFARILYELTSR 447 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~-p~nr~~ll~--~E~~l~~-i~~sD~~~~~~~~~iL~~l~~~ 447 (462)
..+.+..|+.++.++ ++++.+.|+.+|.+|+.. ++++..++. .=+.|.. +.-.|+.+....+.+|..+..+
T Consensus 339 -~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 339 -NAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp -HTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred -HcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 457999999999876 578899999999999974 444444331 1122222 2235778888888888888764
No 24
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.14 E-value=8.7e-06 Score=78.49 Aligned_cols=149 Identities=22% Similarity=0.226 Sum_probs=115.4
Q ss_pred HHHHHhhhCCCCH--HHHHHHHHHHHHhhc-CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012499 293 VEAIMGILGSPFK--AWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 369 (462)
Q Consensus 293 l~~l~~~L~S~Dr--~~ii~aLE~L~kL~~-~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~ 369 (462)
+..+..+|.|+|. ..+..|..+|..||. ++.|...|...- .+..+|++|..++.++++.+..+|.+|+..+.+.+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G--~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLR--GILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4567788898887 778889999999996 455665554321 56889999999999999999999999999877777
Q ss_pred HHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHH---h-----------------c
Q 012499 370 LKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL---F-----------------S 429 (462)
Q Consensus 370 ~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~---~-----------------s 429 (462)
..|+. .|+|..||.+|... +..++-+.|+.+|.+|+..++||..+.. + -+--++ + +
T Consensus 88 ~~I~~-~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 88 LEVAE-LNGVPRLLQVLKQT-RDLETKKQITGLLWNLSSNDKLKNLMIT-E-ALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHH-TTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSGGGHHHHHH-H-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHH-cCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcChhhHHHHHh-c-cHHHHHHHHhccccCCcccccccccccc
Confidence 77765 58999999999742 1478888899999999999999998875 2 222221 1 1
Q ss_pred chhhHHHHHHHHHHHhcC
Q 012499 430 DGRYSDTFARILYELTSR 447 (462)
Q Consensus 430 D~~~~~~~~~iL~~l~~~ 447 (462)
|..+-.--+.+|.-|++.
T Consensus 164 ~~~v~~na~~~L~nLss~ 181 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSA 181 (233)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 446666678889999874
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.13 E-value=0.00011 Score=73.54 Aligned_cols=213 Identities=14% Similarity=0.067 Sum_probs=145.5
Q ss_pred hhhhhhcCCCC-CccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccc-cccccCCcchhhhhcHHHHH
Q 012499 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLD-LRIFSSSKQSYIKITEKRAV 293 (462)
Q Consensus 216 ~s~ILRNLSf~-p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~-L~~~~~~~~~~i~i~~~~ll 293 (462)
++.+|+|++.. ++|...+.+ ..++..|+.++.+ .+.++++.++.+|+||+..-. ... .+...-.+
T Consensus 85 a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~---~~~~vr~~a~~~L~~l~~~~~~~~~---------~~~~~~~i 151 (450)
T 2jdq_A 85 SAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLSS---EFEDVQEQAVWALGNIAGDSTMCRD---------YVLDCNIL 151 (450)
T ss_dssp HHHHHHHHHSSCHHHHHHHHH-TTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCHHHHH---------HHHHTTCH
T ss_pred HHHHHHHHhcCCHHHHHHHHh-CCCHHHHHHHHcC---CCHHHHHHHHHHHHHHccCCHHHHH---------HHHHCCCH
Confidence 57788887763 566666654 4567777777665 356899999999999997421 000 01011134
Q ss_pred HHHHhhhCC-CCHHHHHHHHHHHHHhhcCC--CCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH
Q 012499 294 EAIMGILGS-PFKAWHCAAAELLGRLIINP--DNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL 370 (462)
Q Consensus 294 ~~l~~~L~S-~Dr~~ii~aLE~L~kL~~~~--~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~ 370 (462)
..+..++.+ .+......|+.+|++|+... .+... ....++..++.+|..+|..++..++.+|.+++........
T Consensus 152 ~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~---~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 228 (450)
T 2jdq_A 152 PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFA---KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQ 228 (450)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGG---GTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHH---HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHH
Confidence 566777774 68889999999999999764 22211 2244677888889889999999999999999987655544
Q ss_pred HHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhH---HHHHHHH-hcchhhHHHHHHHHHHHhc
Q 012499 371 KLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYE---NAFAEIL-FSDGRYSDTFARILYELTS 446 (462)
Q Consensus 371 ~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E---~~l~~i~-~sD~~~~~~~~~iL~~l~~ 446 (462)
.+ ...+.|..|+.++.++ ++++...|+.+|.+|+...++....+.-. +.|..+. -.|+.+......+|..++.
T Consensus 229 ~~-~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 229 AV-IDAGVCRRLVELLMHN--DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HH-HHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HH-HHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 33 3467899999999744 67888999999999999876543221111 1222221 1356677777777777765
Q ss_pred C
Q 012499 447 R 447 (462)
Q Consensus 447 ~ 447 (462)
+
T Consensus 306 ~ 306 (450)
T 2jdq_A 306 G 306 (450)
T ss_dssp S
T ss_pred C
Confidence 4
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.08 E-value=0.00012 Score=81.01 Aligned_cols=215 Identities=13% Similarity=0.126 Sum_probs=145.1
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
++..|+||++.++|...+.+. +.+..|+.++.+. +++++..++.+|.||+..-. .... .+-..-.+..
T Consensus 213 Aa~aL~~Ls~~~~~~~~i~~~-g~I~~Lv~lL~~~---~~~v~~~A~~aL~nLa~~~~------~~~~--~v~~~g~v~~ 280 (780)
T 2z6g_A 213 TSGTLHNLSHHREGLLAIFKS-GGIPALVNMLGSP---VDSVLFHAITTLHNLLLHQE------GAKM--AVRLAGGLQK 280 (780)
T ss_dssp HHHHHHHHHTSHHHHHHHHHT-THHHHHHHHTTCS---CHHHHHHHHHHHHHHHHHST------THHH--HHHHTTHHHH
T ss_pred HHHHHHHHhCCchhHHHHHHc-CCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCh------hhHH--HHHHcCCHHH
Confidence 588899999999998888886 7788887776553 45799999999999986321 0000 0111124567
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcC-CCCccccCCCchHHHHHHHHhcCCcH-HHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIIN-PDNEPFLLPFVPQIHKRLVDLMSLPA-FDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~-~~Ne~~ll~~~~~i~~rlv~lL~l~D-~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
+..+|.+++......|+++|..|+.. +.|...+... ..+..++.+|...+ ...++.+..+|.+|+.-. ..+..+.
T Consensus 281 Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~--~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~ 357 (780)
T 2z6g_A 281 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS--GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIV 357 (780)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTT--THHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc--CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHH
Confidence 77888888877777788888888862 3333322221 25667778776543 467788999999999743 3334443
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHH-HhcchhhHHHHHHHHHHHhcCC
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEI-LFSDGRYSDTFARILYELTSRP 448 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i-~~sD~~~~~~~~~iL~~l~~~~ 448 (462)
..+.|..|+.++..+ ++++.+.|+.+|.+|++...+....-..=+.|..+ .-.|+.+....+.+|..|+.+.
T Consensus 358 -~~g~l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 358 -EAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp -HTTHHHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred -HhchHHHHHHHHcCC--chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 457899999999876 57889999999999998764321111111122221 2247778888888888887764
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.06 E-value=9.9e-05 Score=82.18 Aligned_cols=227 Identities=17% Similarity=0.192 Sum_probs=158.4
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccc----cc---------------c
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLD----LR---------------I 276 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~----L~---------------~ 276 (462)
++.+|-|+|..++|-..++++ +.++.|+..+........+.|.+|.-.|++|+-..+ +. .
T Consensus 477 A~~aL~nLS~d~~~R~~lvqq-Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~ 555 (778)
T 3opb_A 477 VVRIIYNITRSKNFIPQLAQQ-GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLP 555 (778)
T ss_dssp HHHHHHHHHTSGGGHHHHHHT-THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcC
Confidence 589999999999999999996 557777766654422112378888888888762211 10 1
Q ss_pred c-cCCc----------c---hh--------h-hhc------------H-HHHHHHHHhhhCCCCHHHHHHHHHHHHHhhc
Q 012499 277 F-SSSK----------Q---SY--------I-KIT------------E-KRAVEAIMGILGSPFKAWHCAAAELLGRLII 320 (462)
Q Consensus 277 ~-~~~~----------~---~~--------i-~i~------------~-~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~ 320 (462)
+ +... + .+ + ... . .-.+..|..++.++......+|.|++++|+.
T Consensus 556 ~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 556 RSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp CSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred CCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 0 0110 0 11 0 001 0 1134455667778888899999999999999
Q ss_pred CCCCc--cccCCCchH---HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHH
Q 012499 321 NPDNE--PFLLPFVPQ---IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEV 395 (462)
Q Consensus 321 ~~~Ne--~~ll~~~~~---i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em 395 (462)
++... .++..-.|. -+.-+|.|+...|.+.+.++.-+|.+++......|..+...++.|+.|+.++...|+++++
T Consensus 636 ~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l 715 (778)
T 3opb_A 636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIEL 715 (778)
T ss_dssp SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHH
T ss_pred CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHH
Confidence 77652 333332344 2677899999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHhhc-CCCchh-----hHH---hhHHHHHHHHhc---chhhHHHHHHHHHH
Q 012499 396 CRKAAMILESLVS-EPQNRV-----LLL---AYENAFAEILFS---DGRYSDTFARILYE 443 (462)
Q Consensus 396 ~rrAA~~L~~la~-~p~nr~-----~ll---~~E~~l~~i~~s---D~~~~~~~~~iL~~ 443 (462)
..|++..+.+|+. .|+|.. .++ ++-..|..+.-+ |+.+.+.+-.+|-.
T Consensus 716 ~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~~~~~~~~~~ 775 (778)
T 3opb_A 716 RQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVILAK 775 (778)
T ss_dssp HHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTTSHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 9999999999996 454443 332 344444444332 66666666666543
No 28
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.06 E-value=0.00011 Score=82.42 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=121.6
Q ss_pred CcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q 012499 236 HRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELL 315 (462)
Q Consensus 236 ~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L 315 (462)
..+++..|+.++.+ ++...++++++.+.+++..-.-+++ +...-. ..|...+.+.+......|+-+|
T Consensus 288 ~~G~v~~li~Ll~s---~~~~~q~~A~~al~~aa~~~~~R~~---------I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L 354 (810)
T 3now_A 288 REGILQMILAMATT---DDELQQRVACECLIAASSKKDKAKA---------LCEQGV-DILKRLYHSKNDGIRVRALVGL 354 (810)
T ss_dssp TTTHHHHHHHHHHS---SCHHHHHHHHHHHHHHTTSHHHHHT---------THHHHH-HHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCcHHHHH---------HHHcCc-HHHHHHHcCCCHHHHHHHHHHH
Confidence 44666666544433 3457889999999999986444432 222223 6677777888888888999999
Q ss_pred HHhhcCCC---CccccCC-CchHHHHHHHHhcCCc--HHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCC
Q 012499 316 GRLIINPD---NEPFLLP-FVPQIHKRLVDLMSLP--AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 389 (462)
Q Consensus 316 ~kL~~~~~---Ne~~ll~-~~~~i~~rlv~lL~l~--D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~ 389 (462)
+|++.... +...+.. .+.++.+.++++|..+ |.+.+..+++.|++||. +.+.+..+....++|..||.+++.+
T Consensus 355 ~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~ 433 (810)
T 3now_A 355 CKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGG 433 (810)
T ss_dssp HHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTT
T ss_pred HHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCC
Confidence 99986532 2233332 2456899999999988 89999999999999987 5677788998899999999999876
Q ss_pred CCChHHHHHHHHHHHHhhcCCC
Q 012499 390 HPVPEVCRKAAMILESLVSEPQ 411 (462)
Q Consensus 390 h~~~em~rrAA~~L~~la~~p~ 411 (462)
++.+...|+.+|.||+..++
T Consensus 434 --d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 434 --NQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp --CGGGHHHHHHHHHHHTTCSC
T ss_pred --ChHHHHHHHHHHHHHcCCch
Confidence 56778999999999999653
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.02 E-value=0.00012 Score=76.26 Aligned_cols=215 Identities=14% Similarity=0.117 Sum_probs=144.9
Q ss_pred hhhhhhcCCCC-CccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLSf~-p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
++.+|.|++.. +++...+.+ .+.+..|+.++.+ .+.++++.++.+|+||+..-.-. ... +...-.+.
T Consensus 151 A~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~---~~~~vr~~A~~aL~~l~~~~~~~------~~~--~~~~~~l~ 218 (530)
T 1wa5_B 151 AAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLYT---GSVEVKEQAIWALGNVAGDSTDY------RDY--VLQCNAME 218 (530)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHH---CCHHHHHHHHHHHHHHHTTCHHH------HHH--HHHTTCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhCCCccc------hHH--HHHcCcHH
Confidence 47778887764 455555554 3556777666654 34579999999999999632100 000 11112356
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHhhcCC-CCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 295 AIMGILGSPFKAWHCAAAELLGRLIINP-DNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 295 ~l~~~L~S~Dr~~ii~aLE~L~kL~~~~-~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
.+...+.+.+......|+.+|++||... .+.... ....++..++.+|..+|.+++..++.+|.+|+.........+.
T Consensus 219 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~--~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~ 296 (530)
T 1wa5_B 219 PILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS--VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296 (530)
T ss_dssp HHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH--HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6778888888889999999999999875 333211 1233778889999999999999999999999987766544443
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC-chhhHHhhH--HHHHHHH-hcchhhHHHHHHHHHHHhcC
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ-NRVLLLAYE--NAFAEIL-FSDGRYSDTFARILYELTSR 447 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~-nr~~ll~~E--~~l~~i~-~sD~~~~~~~~~iL~~l~~~ 447 (462)
..+.|..|+.++.++ ++++...|+.+|.+|+...+ ....++... ..|..+. -.|+.+...-+.+|..++.+
T Consensus 297 -~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 297 -DVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371 (530)
T ss_dssp -HTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred -hcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 457899999999854 67888889999999997643 333332111 1122211 12566666667777777654
No 30
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.99 E-value=3.7e-05 Score=83.25 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=118.7
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHhhc-CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHH
Q 012499 293 VEAIMGILGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRL 370 (462)
Q Consensus 293 l~~l~~~L~S~Dr~~ii~aLE~L~kL~~-~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~-~~~~~~ 370 (462)
+..+..+|.|+|...+..|..+|.+||. ++.|...|...- .+..+|++|..++.++++.+..+|.+|+.. +.+.+.
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G--~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLK--GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcC--CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3567788899999999999999999996 556655554321 578899999999999999999999999986 677766
Q ss_pred HHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHH---H-------------------h
Q 012499 371 KLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEI---L-------------------F 428 (462)
Q Consensus 371 ~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i---~-------------------~ 428 (462)
.|+. .|+|..||.+|..++ ..++-+.||.+|.+||.+|+||..++. ..+-.+ . .
T Consensus 128 ~I~~-~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 128 AIKN-CDGVPALVRLLRKAR-DMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHH-TTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHH-cCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccccccccccccc
Confidence 6664 589999999998753 477888899999999999999999862 232221 1 1
Q ss_pred cchhhHHHHHHHHHHHhcCC
Q 012499 429 SDGRYSDTFARILYELTSRP 448 (462)
Q Consensus 429 sD~~~~~~~~~iL~~l~~~~ 448 (462)
.|+.|-.--+.+|..|++..
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~ 223 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSER 223 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSC
T ss_pred ccHHHHHHHHHHHHHHhcCC
Confidence 15677778889999998865
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.98 E-value=2.1e-05 Score=77.99 Aligned_cols=217 Identities=15% Similarity=0.099 Sum_probs=145.8
Q ss_pred hhhhhhhcCCCCCccHHHHhhCcchHHHHHh-hhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHH
Q 012499 215 GASNIIRNFSFMPDNEVIMAQHRHCLETVFQ-CIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAV 293 (462)
Q Consensus 215 ~~s~ILRNLSf~p~N~~~LA~~~~~l~~LLl-c~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll 293 (462)
.+.-+|.+++-..+|+..+.+.-. +..|+. ++.+ .+.++++++.-+++||+..-+-. .-.+...-.+
T Consensus 59 ~Al~~L~~lv~~~dna~~~~~~G~-l~~Lv~~lL~s---~~~~vr~~Aa~~Lg~ia~~n~~~--------~~~vv~~g~l 126 (296)
T 1xqr_A 59 GALELLADLCENMDNAADFCQLSG-MHLLVGRYLEA---GAAGLRWRAAQLIGTCSQNVAAI--------QEQVLGLGAL 126 (296)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTH-HHHHHHTTTTC---SSHHHHHHHHHHHHHHHTTCHHH--------HHHHHHTTHH
T ss_pred HHHHHHHHHHhChhhHHHHHHcCC-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhCCHHH--------HHHHHHCCCH
Confidence 357888888888889999988765 455555 6543 44689999999999999632110 0001111234
Q ss_pred HHHHhhhCC-CCHHHHHHHHHHHHHhhcCCCC-ccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012499 294 EAIMGILGS-PFKAWHCAAAELLGRLIINPDN-EPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 371 (462)
Q Consensus 294 ~~l~~~L~S-~Dr~~ii~aLE~L~kL~~~~~N-e~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ 371 (462)
..+..+|.+ ++......|+-+|+.|+.+..+ ...+... ..+..++.+|..+|..++..+.-+|.+|+..+...+..
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~--ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~ 204 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRL--DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 204 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHH
Confidence 556666764 4778889999999999975432 2222211 26777888888899999999999999999987766665
Q ss_pred HhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC-CCchh--------hHHhhHHHHHHHHhcc--hhhHHHHHHH
Q 012499 372 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE-PQNRV--------LLLAYENAFAEILFSD--GRYSDTFARI 440 (462)
Q Consensus 372 ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~-p~nr~--------~ll~~E~~l~~i~~sD--~~~~~~~~~i 440 (462)
+. ..++|..||.+|..+ ++++-..|+.+|.+|++. +++.. +....|++.-.|---| +..-....+|
T Consensus 205 vv-~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~i 281 (296)
T 1xqr_A 205 LC-SMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKL 281 (296)
T ss_dssp HH-HTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HH-HcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 55 568999999999887 467788999999999988 33222 2233444444332223 3555566666
Q ss_pred HHHHhcCC
Q 012499 441 LYELTSRP 448 (462)
Q Consensus 441 L~~l~~~~ 448 (462)
+-.+-+.+
T Consensus 282 l~~~f~~~ 289 (296)
T 1xqr_A 282 LQTCFSSP 289 (296)
T ss_dssp HHHHCC--
T ss_pred HHHHcCCC
Confidence 66665443
No 32
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.96 E-value=0.00024 Score=74.61 Aligned_cols=216 Identities=13% Similarity=0.144 Sum_probs=142.1
Q ss_pred hhhhhhcCCC-CCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCcc-ccccccCCcchhhhhcHHHHH
Q 012499 216 ASNIIRNFSF-MPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLL-DLRIFSSSKQSYIKITEKRAV 293 (462)
Q Consensus 216 ~s~ILRNLSf-~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l-~L~~~~~~~~~~i~i~~~~ll 293 (462)
++.+|.|++. .++|...+.++ +.+..|+.++.+ .+.+++++++-+|+|||..- ..++ .+...-.+
T Consensus 140 Aa~aL~nia~~~~~~~~~vv~~-Gaip~Lv~LL~s---~~~~v~e~A~~aL~nLa~~~~~~r~---------~i~~~g~i 206 (529)
T 3tpo_A 140 SAWALTNIASGTSEQTKAVVDG-GAIPAFISLLAS---PHAHISEQAVWALGNIAGAGSAFRD---------LVIKHGAI 206 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCHHHHH---------HHHHTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcC---CCHHHHHHHHHHHHHHhccCHHHHH---------HHHHcCCc
Confidence 5778888865 45566666664 556666666554 34579999999999999631 1110 01111123
Q ss_pred HHHHhhhCCCC-----HHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH
Q 012499 294 EAIMGILGSPF-----KAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC 368 (462)
Q Consensus 294 ~~l~~~L~S~D-----r~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~ 368 (462)
..+..+|.+.+ ...+..+.-+|+.+|.+..+...+. ....++.-++.+|..+|.+++..++.+|.+++......
T Consensus 207 ~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~ 285 (529)
T 3tpo_A 207 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 285 (529)
T ss_dssp HHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH-HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH-HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 45566666544 3456778899999998776543321 12346778899999999999999999999999987665
Q ss_pred HHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCc-hhhHHhhH--HHHHHHH-hcchhhHHHHHHHHHHH
Q 012499 369 RLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQN-RVLLLAYE--NAFAEIL-FSDGRYSDTFARILYEL 444 (462)
Q Consensus 369 ~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~n-r~~ll~~E--~~l~~i~-~sD~~~~~~~~~iL~~l 444 (462)
...+ ...+.+..||.++.++ ++++...|+.+|.+|+.+.+. +..++... ..|..+. -.++.+...-+.+|..+
T Consensus 286 ~~~v-~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl 362 (529)
T 3tpo_A 286 IEMV-VKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 362 (529)
T ss_dssp HHHH-HTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHH-HhccchHHHHHHhcCC--ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4444 4567999999999866 677888999999999987643 33332211 1111111 12555556666666666
Q ss_pred hcCC
Q 012499 445 TSRP 448 (462)
Q Consensus 445 ~~~~ 448 (462)
+.+.
T Consensus 363 ~~~~ 366 (529)
T 3tpo_A 363 TAGR 366 (529)
T ss_dssp HTSC
T ss_pred hccc
Confidence 6543
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.84 E-value=0.00017 Score=75.65 Aligned_cols=219 Identities=11% Similarity=0.108 Sum_probs=147.4
Q ss_pred hhhhhhcCCCC-CccHHHHhhCcchHHHHHhhhcccCC--ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHH
Q 012499 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVT--EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRA 292 (462)
Q Consensus 216 ~s~ILRNLSf~-p~N~~~LA~~~~~l~~LLlc~~~~~~--~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~l 292 (462)
++..|.|++.. |+|...+.++ +.+..|+.++...-. ....+..++.-+++|++..-.-. +.. .....+
T Consensus 182 A~~aL~nLa~~~~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~------~~~--~~~~~~ 252 (529)
T 3tpo_A 182 AVWALGNIAGAGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA------PPL--DAVEQI 252 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC------CCH--HHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch------hhH--HHHhhH
Confidence 47788898875 5666666665 445555555543211 12357788899999987643221 011 112345
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012499 293 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 371 (462)
Q Consensus 293 l~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne-~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ 371 (462)
+..|..+|.++|...+..|..+|+.|+..+.+. ..+.. ..++.+++.+|..++..++..++.+|.+++..++.....
T Consensus 253 lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 330 (529)
T 3tpo_A 253 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK--KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 330 (529)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT--TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh--ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHH
Confidence 677888999999999999999999999765431 22211 126778999999999999999999999999887766555
Q ss_pred HhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHH---HHH-HHhcchhhHHHHHHHHHHHhcC
Q 012499 372 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENA---FAE-ILFSDGRYSDTFARILYELTSR 447 (462)
Q Consensus 372 ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~---l~~-i~~sD~~~~~~~~~iL~~l~~~ 447 (462)
+. ..+.+..|+.+++++ .+++-+.|+.+|.+|+....+....+.-... |.. +.-.|.++-...+..|.-++.+
T Consensus 331 i~-~~g~l~~L~~LL~~~--~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 331 VI-DAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HH-HTTGGGGHHHHTTCS--SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred Hh-hcccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 44 467899999999865 6788999999999999876554333322211 111 2223666666666666666654
Q ss_pred C
Q 012499 448 P 448 (462)
Q Consensus 448 ~ 448 (462)
.
T Consensus 408 ~ 408 (529)
T 3tpo_A 408 G 408 (529)
T ss_dssp S
T ss_pred C
Confidence 3
No 34
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.84 E-value=6.5e-05 Score=78.74 Aligned_cols=220 Identities=11% Similarity=0.076 Sum_probs=147.0
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCC--ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVT--EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAV 293 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~--~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll 293 (462)
++..|+|++...++.+.+....+.+..|+.++...-. ....+..++.-+++|++..-.-.. .. .....++
T Consensus 163 A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~------~~--~~~~~~l 234 (510)
T 3ul1_B 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP------PL--DAVEQIL 234 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC------CH--HHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh------HH--HHHHhHH
Confidence 4778899988644444444444556666555543211 113577889999999886432221 11 1123456
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHH
Q 012499 294 EAIMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 372 (462)
Q Consensus 294 ~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne-~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~i 372 (462)
..+..++.++|...+..|..+|++|+....+. ..+.. ..++.+++++|..++..++..++.+|.+++..++..+..+
T Consensus 235 p~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i 312 (510)
T 3ul1_B 235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK--KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT--TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHh--cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHH
Confidence 77888999999999999999999999765432 12211 1267889999999999999999999999999887776555
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHH---HHHH-HHhcchhhHHHHHHHHHHHhcCC
Q 012499 373 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYEN---AFAE-ILFSDGRYSDTFARILYELTSRP 448 (462)
Q Consensus 373 a~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~---~l~~-i~~sD~~~~~~~~~iL~~l~~~~ 448 (462)
. ..+.+..|+.+++++ +.++-+.|+.+|.+|+....+....+.-+. .|.. +.-.|.++...-+..|.-++++.
T Consensus 313 ~-~~g~l~~L~~LL~~~--~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 313 I-DAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp H-HTTGGGGCC-CTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred h-hccchHHHHHHhcCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 4 457889999999755 678899999999999986654333332221 1222 22347777777777777666543
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.81 E-value=0.00016 Score=75.68 Aligned_cols=211 Identities=13% Similarity=0.152 Sum_probs=143.7
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
+...|+||+..+.+...+....+++..|+.++.. .+..++..++-+++||+..-+-. .. .+.+.-.+..
T Consensus 252 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~al~aL~nl~~~~~~~-------~~-~i~~~g~l~~ 320 (510)
T 3ul1_B 252 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---TELPIVTPALRAIGNIVTGTDEQ-------TQ-KVIDAGALAV 320 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC---SCHHHHHHHHHHHHHHTTSCHHH-------HH-HHHHTTGGGG
T ss_pred HHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC---CChhhhhHHHHHHHHhhcCCHHH-------HH-HHhhccchHH
Confidence 5778899998888777777777778877766654 34579999999999998532211 00 0111112334
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhc
Q 012499 296 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS 374 (462)
Q Consensus 296 l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~-i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~ 374 (462)
+..+|.+++......|..+|++|+... .+........ ++..++++|...+.+++..+.-+|.+++..+.........
T Consensus 321 L~~LL~~~~~~v~~~A~~aL~nl~a~~--~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~ 398 (510)
T 3ul1_B 321 FPSLLTNPKTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 398 (510)
T ss_dssp CC-CTTCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 456778889999999999999998753 2222222222 7788999999999999999999999999876544444445
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC----CCchhhHHhhHH-----HHHHHHhc-chhhHHHHHHHH
Q 012499 375 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE----PQNRVLLLAYEN-----AFAEILFS-DGRYSDTFARIL 441 (462)
Q Consensus 375 ~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~----p~nr~~ll~~E~-----~l~~i~~s-D~~~~~~~~~iL 441 (462)
..++|..|+.+|+.. ++++.+.+...|.+|-+. ++...+-..+|. .+..+-.. ++.+...-.+||
T Consensus 399 ~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 473 (510)
T 3ul1_B 399 HCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473 (510)
T ss_dssp HTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678999999999876 688899999999888653 222223333442 34444333 555666666666
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00067 Score=75.57 Aligned_cols=200 Identities=14% Similarity=0.176 Sum_probs=128.2
Q ss_pred HHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHH---H
Q 012499 231 VIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKA---W 307 (462)
Q Consensus 231 ~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~---~ 307 (462)
..+.++ +++..|+.+... .+++.++.+.-++.||+..-.-+. .+-..=.+..|+..|.+.... .
T Consensus 451 ~~l~ea-GvIp~Lv~Ll~S---~s~~~re~A~~aL~nLS~d~~~R~---------~lvqqGal~~LL~lL~s~~~~~~~~ 517 (778)
T 3opb_A 451 KYILRT-ELISFLKREMHN---LSPNCKQQVVRIIYNITRSKNFIP---------QLAQQGAVKIILEYLANKQDIGEPI 517 (778)
T ss_dssp HHTTTT-THHHHHHHHGGG---SCHHHHHHHHHHHHHHHTSGGGHH---------HHHHTTHHHHHHHHTTCC---CCHH
T ss_pred HHHHHC-cCHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHH---------HHHHCCCHHHHHHHHhcCCCcchHH
Confidence 344443 456666555433 345799999999999996422221 111122345566666554322 4
Q ss_pred HHHHHHHHHHhhcCCCCccccCCCch-HHHHHHHHhcCC-cHHH------------H-HHHHHHHHHHhhccC----HHH
Q 012499 308 HCAAAELLGRLIINPDNEPFLLPFVP-QIHKRLVDLMSL-PAFD------------A-QAAAVGALYNLAEVN----VDC 368 (462)
Q Consensus 308 ii~aLE~L~kL~~~~~Ne~~ll~~~~-~i~~rlv~lL~l-~D~~------------L-~~~aLe~LY~Ls~~~----~~~ 368 (462)
...|..+|.+|++..+++..+-...+ ..+..+++||.. ++.. + .--+|-+|+||+... ++.
T Consensus 518 k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~ 597 (778)
T 3opb_A 518 RILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV 597 (778)
T ss_dssp HHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH
Confidence 67899999999988776665543222 488899999983 2211 2 456888999999996 567
Q ss_pred HHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchh-hHHhhH-H----HHHHH-Hh---cchhhHHHHH
Q 012499 369 RLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRV-LLLAYE-N----AFAEI-LF---SDGRYSDTFA 438 (462)
Q Consensus 369 ~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~-~ll~~E-~----~l~~i-~~---sD~~~~~~~~ 438 (462)
+.+|..+.+++..|+.++..+| ..+-|.|+.++.+|+.+|+.+. .|...| . ||-.+ .+ .|.++....+
T Consensus 598 r~~Ii~~~ga~~~L~~LL~s~n--~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAa 675 (778)
T 3opb_A 598 CKHIVSTKVYWSTIENLMLDEN--VPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVA 675 (778)
T ss_dssp HHHHHHSHHHHHHHHHGGGCSS--HHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhCCC--HHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHH
Confidence 7888887789999999998874 3344446699999999999873 554344 1 22222 22 2666666666
Q ss_pred HHHHHHh
Q 012499 439 RILYELT 445 (462)
Q Consensus 439 ~iL~~l~ 445 (462)
-+|--++
T Consensus 676 gALAnLt 682 (778)
T 3opb_A 676 AIFANIA 682 (778)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6665553
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.65 E-value=0.00017 Score=69.47 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=95.8
Q ss_pred HHHHHHHhcCCcHH--HHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCC
Q 012499 335 IHKRLVDLMSLPAF--DAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS-EPQ 411 (462)
Q Consensus 335 i~~rlv~lL~l~D~--~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~-~p~ 411 (462)
.++.+|++|..+|. +++..+..+|.+|+.-+......|+.. |.|..||.+|+.+ ++++-+.||.+|.+|+. .++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQ--NEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHH
Confidence 46789999999887 888888899999999888887767654 7899999999876 68899999999999998 589
Q ss_pred chhhHHhhHH--HHHHHHh--cchhhHHHHHHHHHHHhcCCCCccccc
Q 012499 412 NRVLLLAYEN--AFAEILF--SDGRYSDTFARILYELTSRPNNKVASA 455 (462)
Q Consensus 412 nr~~ll~~E~--~l~~i~~--sD~~~~~~~~~iL~~l~~~~~~~~~~~ 455 (462)
||..+...-- .|..+.- .|..+....+..||.|++...+|..-+
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~ 133 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI 133 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 9998875432 2333322 378899999999999999999886543
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.55 E-value=0.00033 Score=69.39 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=118.3
Q ss_pred hhhhhhcCCCC-CccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHH
Q 012499 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVE 294 (462)
Q Consensus 216 ~s~ILRNLSf~-p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~ 294 (462)
++.+|.|++-. |.+-..+.+. +.+..|+.++... .+.+++..++-+++||+..-.-. .. .+...-.+.
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv~~-g~l~~Ll~LL~~~--~~~~v~~~A~~ALsnl~~~~~~~-----~~---~~~~~ggi~ 170 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVLGL-GALRKLLRLLDRD--ACDTVRVKALFAISCLVREQEAG-----LL---QFLRLDGFS 170 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHC--SCHHHHHHHHHHHHHHHTTCHHH-----HH---HHHHTTHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCcHH-----HH---HHHHCCCHH
Confidence 35555565543 4444555554 5567677676543 23579999999999998422110 00 011112456
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 295 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 295 ~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~-i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
.|..+|.+.|...+..|.-+|+.|+.. +.+.+..+... ++..++.+|..+|..+++.++.+|.+++..+........
T Consensus 171 ~L~~lL~~~d~~v~~~A~~aLs~L~~~--~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~ 248 (296)
T 1xqr_A 171 VLMRAMQQQVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR 248 (296)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhC--ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh
Confidence 777888899999999999999999986 33333333333 889999999999999999999999999998665533222
Q ss_pred cc-hhHHHHH---HHhhcCCCC-ChHHHHHHHHHHHHhhcCCCch
Q 012499 374 SE-RWAIDRL---LRVIKTPHP-VPEVCRKAAMILESLVSEPQNR 413 (462)
Q Consensus 374 ~~-~~~V~~L---V~ll~~~h~-~~em~rrAA~~L~~la~~p~nr 413 (462)
.. ......| +.-+. .|+ +.|+.++|..++...-..|++.
T Consensus 249 ~~~~~l~~lL~~~~~~lq-~~e~~~e~~~~~~~il~~~f~~~~~~ 292 (296)
T 1xqr_A 249 EPELGLEELLRHRCQLLQ-QHEEYQEELEFCEKLLQTCFSSPADD 292 (296)
T ss_dssp CGGGCHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 22 2122222 22222 365 6789999999999988877653
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.06 E-value=0.035 Score=50.04 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=110.2
Q ss_pred cchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 012499 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLG 316 (462)
Q Consensus 237 ~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~ 316 (462)
+..+..|+.++.+ +|.++|..++..|+++... . .+..+..+|.++|......|+++|+
T Consensus 49 ~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~-----------~--------~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 49 ERAVEPLIKALKD---EDAWVRRAAADALGQIGDE-----------R--------AVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp GGGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCG-----------G--------GHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCH-----------H--------HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4566777766654 4568999999999998631 1 1356667788999999999999999
Q ss_pred HhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHH
Q 012499 317 RLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVC 396 (462)
Q Consensus 317 kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~ 396 (462)
++.. +..+..++.+|..+|..++..++..|..+. .+.++..|+.++.++ ++++-
T Consensus 107 ~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d~--~~~vr 160 (211)
T 3ltm_A 107 QIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------------DERAVEPLIKALKDE--DGWVR 160 (211)
T ss_dssp HHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------CGGGHHHHHHHTTCS--SHHHH
T ss_pred HhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHcCC--CHHHH
Confidence 9853 235677888898899999999999998773 245788999998655 56777
Q ss_pred HHHHHHHHHhhcCCCchhhHHhhHHHHHHHHhcchhhHHHHHHHHHHHhcCCCCc
Q 012499 397 RKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNK 451 (462)
Q Consensus 397 rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~~sD~~~~~~~~~iL~~l~~~~~~~ 451 (462)
+.|+.+|..+.. |+-.+. ++..+. =.|+.|-..-.+.|..+.....++
T Consensus 161 ~~a~~aL~~~~~-~~~~~~---L~~~l~---d~~~~vr~~A~~aL~~~~~~~~~~ 208 (211)
T 3ltm_A 161 QSAADALGEIGG-ERVRAA---MEKLAE---TGTGFARKVAVNYLETHKSFNHHH 208 (211)
T ss_dssp HHHHHHHHHHCS-HHHHHH---HHHHHH---HCCHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhCc-hhHHHH---HHHHHh---CCCHHHHHHHHHHHHhcCCCCCCC
Confidence 777778877743 222222 222222 258888888889998888776654
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.84 E-value=0.032 Score=50.25 Aligned_cols=127 Identities=18% Similarity=0.126 Sum_probs=97.1
Q ss_pred HhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHH
Q 012499 233 MAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAA 312 (462)
Q Consensus 233 LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aL 312 (462)
+.+++..+..|+.++.+ .+..+|..++..|+.+... . ....+...+.++|......|+
T Consensus 14 ~~~~~~~~~~L~~~L~~---~~~~vR~~A~~~L~~~~~~--------~-----------~~~~L~~~l~~~~~~vr~~a~ 71 (211)
T 3ltm_A 14 LRADPEKVEMYIKNLQD---DSYYVRRAAAYALGKIGDE--------R-----------AVEPLIKALKDEDAWVRRAAA 71 (211)
T ss_dssp --CCGGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCG--------G-----------GHHHHHHHTTCSCHHHHHHHH
T ss_pred hhcCHhHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCc--------c-----------HHHHHHHHHcCCCHHHHHHHH
Confidence 45678888888777764 4568999999999988641 0 135667788888999999999
Q ss_pred HHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCC
Q 012499 313 ELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPV 392 (462)
Q Consensus 313 E~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~ 392 (462)
++|+++.. +..+..++.+|..+|..++..++..|-.+.. +.++..|+.+++++ +
T Consensus 72 ~aL~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~--~ 125 (211)
T 3ltm_A 72 DALGQIGD------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDE--D 125 (211)
T ss_dssp HHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS--S
T ss_pred HHHHhhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCC--C
Confidence 99999863 3466778888999999999999998877642 46889999999655 6
Q ss_pred hHHHHHHHHHHHHhh
Q 012499 393 PEVCRKAAMILESLV 407 (462)
Q Consensus 393 ~em~rrAA~~L~~la 407 (462)
+++-..|+.+|-.+.
T Consensus 126 ~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 126 WFVRIAAAFALGEIG 140 (211)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC
Confidence 777777777777774
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.81 E-value=0.095 Score=46.75 Aligned_cols=155 Identities=19% Similarity=0.157 Sum_probs=108.8
Q ss_pred cchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 012499 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLG 316 (462)
Q Consensus 237 ~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~ 316 (462)
+..+..|+.++.+ .+..+|..++..|+++... . .+..+..+|.++|......|+++|+
T Consensus 44 ~~~~~~L~~~l~~---~~~~vr~~a~~~L~~~~~~-----------~--------~~~~L~~~l~d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 44 ERAVEPLIKALKD---EDAWVRRAAADALGQIGDE-----------R--------AVEPLIKALKDEDGWVRQSAAVALG 101 (201)
T ss_dssp GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCG-----------G--------GHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCH-----------H--------HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3456666666643 4567999999999988631 1 1356667888899999999999999
Q ss_pred HhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHH
Q 012499 317 RLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVC 396 (462)
Q Consensus 317 kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~ 396 (462)
++.. +..+..++.+|..+|..++..++..|..+.. +.++..|+.++.++ ++++-
T Consensus 102 ~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~--~~~vr 155 (201)
T 3ltj_A 102 QIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------------ERAVEPLIKALKDE--DGWVR 155 (201)
T ss_dssp HHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC------------GGGHHHHHHHTTCS--SHHHH
T ss_pred HhCc------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHcCC--CHHHH
Confidence 9853 3366778888888999999999999887742 56889999999765 56677
Q ss_pred HHHHHHHHHhhcCCCchhhHHhhHHHHHHHHhcchhhHHHHHHHHHHHhc
Q 012499 397 RKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTS 446 (462)
Q Consensus 397 rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~~sD~~~~~~~~~iL~~l~~ 446 (462)
+.|+.+|..+. .|+-.+.+ ...+ .=.|+.|.......|-++.+
T Consensus 156 ~~A~~aL~~~~-~~~~~~~L---~~~l---~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 156 QSAADALGEIG-GERVRAAM---EKLA---ETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHC-SHHHHHHH---HHHH---HHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhC-chhHHHHH---HHHH---hCCCHHHHHHHHHHHHHHHh
Confidence 77777787773 22222222 2222 12477777777777776654
No 42
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.30 E-value=0.13 Score=50.04 Aligned_cols=181 Identities=13% Similarity=0.151 Sum_probs=117.7
Q ss_pred cchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 012499 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLG 316 (462)
Q Consensus 237 ~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~ 316 (462)
...+..|+.++|+ .|+..+.++|-+++.+-..++=.- + ..--+.+|..|...+.++|.-..+.|++||+
T Consensus 32 e~~l~~L~~LL~d---kD~~vk~raL~~LeellK~~~~~l------~--~~~~e~~Ld~iI~llk~~dEkval~A~r~L~ 100 (265)
T 3b2a_A 32 KRALFLILELAGE---DDETTRLRAFVALGEILKRADSDL------R--MMVLERHLDVFINALSQENEKVTIKALRALG 100 (265)
T ss_dssp HHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHSCHHH------H--HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccc------c--HHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 4445566666666 567899999999999987643210 0 0112578899999999999999999999999
Q ss_pred HhhcCCCCccccCCCchH----HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhc-chhHHHHHHHhhcCCCC
Q 012499 317 RLIINPDNEPFLLPFVPQ----IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS-ERWAIDRLLRVIKTPHP 391 (462)
Q Consensus 317 kL~~~~~Ne~~ll~~~~~----i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~-~~~~V~~LV~ll~~~h~ 391 (462)
.|-.+.. ..|+ +..-+++++.-++..+++++.|.|=-+ +++. .++.++.|++|++.-
T Consensus 101 ~LLe~vp-------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---------kv~~~~~~V~~~l~sLl~Sk-- 162 (265)
T 3b2a_A 101 YLVKDVP-------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL---------QPLEDSKLVRTYINELVVSP-- 162 (265)
T ss_dssp HHHTTCC-------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---------CBSCCCHHHHHHHHHHHTCS--
T ss_pred HHHcCCC-------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---------CcccchHHHHHHHHHHHhCC--
Confidence 9876643 2233 555667788889999999999998776 4544 788899999999444
Q ss_pred ChHHHHHHH-HHHHHhhcCCCchhhHHhhHHHHHHHHhc-chhhHHHHHHHHHHHhcC
Q 012499 392 VPEVCRKAA-MILESLVSEPQNRVLLLAYENAFAEILFS-DGRYSDTFARILYELTSR 447 (462)
Q Consensus 392 ~~em~rrAA-~~L~~la~~p~nr~~ll~~E~~l~~i~~s-D~~~~~~~~~iL~~l~~~ 447 (462)
+++ ++-|| ..|.+++.-.++...+-..=..+-++-=+ |+.+.+.-=.+|.++.++
T Consensus 163 d~~-vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 163 DLY-TKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SHH-HHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred Chh-HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 443 22233 23456666554444442222222222222 555555555555555444
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.12 E-value=0.065 Score=58.90 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=133.5
Q ss_pred HHhhhhhhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcH
Q 012499 210 QQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITE 289 (462)
Q Consensus 210 qr~a~~~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~ 289 (462)
...+.+++.|.+.- + ..+-|.++..|+.++.+ .+...++.++.+++.|.....-... ... +...-
T Consensus 108 ~~~a~~i~~ia~~~-~-------~~~wp~ll~~L~~~l~~---~~~~~r~~al~~L~~i~~~~~~~~~-~~~---~~~~~ 172 (852)
T 4fdd_A 108 ATVGILITTIASKG-E-------LQNWPDLLPKLCSLLDS---EDYNTCEGAFGALQKICEDSAEILD-SDV---LDRPL 172 (852)
T ss_dssp HHHHHHHHHHHHHT-T-------TTTCTTHHHHHHHHHSC---SSHHHHHHHHHHHHHHHHHHTTHHH-HCS---SSSCH
T ss_pred HHHHHHHHHHHHhc-C-------ccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhHHHhc-hhh---hcchH
Confidence 33444567777654 1 12457788888877765 3456899999999988765432100 000 00001
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012499 290 KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 369 (462)
Q Consensus 290 ~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~ 369 (462)
..++..+..++.+++-.....|+++|+.+..... ..+.+..+.+++.++.++..+|.+++..++++|..+++...+.
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~- 249 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT--QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR- 249 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC--HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH-
Confidence 3456677778888888888999999998875432 3344556678888899998899999999999999999865443
Q ss_pred HHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHHHH
Q 012499 370 LKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL 427 (462)
Q Consensus 370 ~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~ 427 (462)
...+.+..+..++.++.+. .+++-..|...+..+++++..+..+-||-..+..+.
T Consensus 250 -~~~~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~l 304 (852)
T 4fdd_A 250 -LLPHMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVL 304 (852)
T ss_dssp -HGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 1123445667777776653 566777788899999998877776777766665433
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.97 E-value=0.12 Score=46.02 Aligned_cols=123 Identities=18% Similarity=0.104 Sum_probs=91.2
Q ss_pred cchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 012499 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLG 316 (462)
Q Consensus 237 ~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~ 316 (462)
+..+..|+.++.+ ++.++|..++..|+++... . .+..+..++.++|......|+++|+
T Consensus 75 ~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~-----------~--------~~~~L~~~l~d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 75 ERAVEPLIKALKD---EDGWVRQSAAVALGQIGDE-----------R--------AVEPLIKALKDEDWFVRIAAAFALG 132 (201)
T ss_dssp GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCG-----------G--------GHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCcH-----------H--------HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3456666665554 4568999999999998641 1 1355667788889889999999999
Q ss_pred HhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHH
Q 012499 317 RLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVC 396 (462)
Q Consensus 317 kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~ 396 (462)
++.. +..+..++.+|..++..++..+++.|..+. .+.++..|..++.++ ++++-
T Consensus 133 ~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~------------~~~~~~~L~~~l~d~--~~~vr 186 (201)
T 3ltj_A 133 EIGD------------ERAVEPLIKALKDEDGWVRQSAADALGEIG------------GERVRAAMEKLAETG--TGFAR 186 (201)
T ss_dssp HHTC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------SHHHHHHHHHHHHHC--CHHHH
T ss_pred HhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------chhHHHHHHHHHhCC--CHHHH
Confidence 9853 346677888998899999999999998872 355788888888765 56666
Q ss_pred HHHHHHHHHhh
Q 012499 397 RKAAMILESLV 407 (462)
Q Consensus 397 rrAA~~L~~la 407 (462)
+.|+.+|..+.
T Consensus 187 ~~A~~aL~~l~ 197 (201)
T 3ltj_A 187 KVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.69 E-value=0.13 Score=56.34 Aligned_cols=154 Identities=20% Similarity=0.228 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhC--CCCHHHHHHHHHHHHHhhcCCCCccc-------
Q 012499 257 LVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILG--SPFKAWHCAAAELLGRLIINPDNEPF------- 327 (462)
Q Consensus 257 Lr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~--S~Dr~~ii~aLE~L~kL~~~~~Ne~~------- 327 (462)
=|..|+--|-.++.+.... . -. .-+..++..|. ..|...+..+||+|..+...+...+.
T Consensus 38 DRR~Av~~Lk~~sk~y~~~-----V------g~-~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~ 105 (651)
T 3grl_A 38 DRRNAVRALKSLSKKYRLE-----V------GI-QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQ 105 (651)
T ss_dssp HHHHHHHHHHHTTTTTTTH-----H------HH-HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------------
T ss_pred HHHHHHHHHHHHHHHhHHH-----h------hh-hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccccccccc
Confidence 4667777777666433322 1 10 11344444443 57889999999999877665443211
Q ss_pred cC----CCch------HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH-HHHHHhcchhHHHHHHHhhcCCCCChHHH
Q 012499 328 LL----PFVP------QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD-CRLKLASERWAIDRLLRVIKTPHPVPEVC 396 (462)
Q Consensus 328 ll----~~~~------~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~-~~~~ia~~~~~V~~LV~ll~~~h~~~em~ 396 (462)
.. .+.+ .-+.-++++|..+|-..+.+++.+|..|..-... .-..|...+..|.+||.+|++.+ |+.
T Consensus 106 ~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r---E~i 182 (651)
T 3grl_A 106 SEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR---EVI 182 (651)
T ss_dssp --CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS---HHH
T ss_pred chHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch---HHH
Confidence 00 0111 1456689999999999999999999999998765 66678889999999999999874 666
Q ss_pred HH-HHHHHHHhhcCCCchhhHHhhHHHHHH
Q 012499 397 RK-AAMILESLVSEPQNRVLLLAYENAFAE 425 (462)
Q Consensus 397 rr-AA~~L~~la~~p~nr~~ll~~E~~l~~ 425 (462)
|- |...|.+|++.-.+.+-++.||+.+-.
T Consensus 183 RneallLL~~Lt~~n~~iQklVAFEnaFe~ 212 (651)
T 3grl_A 183 RNDGVLLLQALTRSNGAIQKIVAFENAFER 212 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccHHH
Confidence 54 677788999999999999999976654
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.60 E-value=0.29 Score=53.68 Aligned_cols=186 Identities=13% Similarity=0.088 Sum_probs=123.3
Q ss_pred HHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhc
Q 012499 241 ETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLII 320 (462)
Q Consensus 241 ~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~ 320 (462)
..++.++.+ ++..+|..+-++++.|+..-... .-| -++..+..++.++|......++.+|+++|.
T Consensus 93 ~~ll~~l~~---~~~~vr~~~a~~i~~ia~~~~~~----~wp--------~ll~~L~~~l~~~~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 93 SECLNNIGD---SSPLIRATVGILITTIASKGELQ----NWP--------DLLPKLCSLLDSEDYNTCEGAFGALQKICE 157 (852)
T ss_dssp HHHHTTTTC---SSHHHHHHHHHHHHHHHHHTTTT----TCT--------THHHHHHHHHSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCcc----ccH--------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345555543 34579999999999998754211 111 246777888889888888999999999997
Q ss_pred CCCCc---cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHH
Q 012499 321 NPDNE---PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCR 397 (462)
Q Consensus 321 ~~~Ne---~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~r 397 (462)
.-... +.+....+.++..+++++..++..++..++.+|.++....... .....+..+..|+.++.++ ++++-+
T Consensus 158 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~--~~~~~~~~l~~l~~~~~d~--~~~vr~ 233 (852)
T 4fdd_A 158 DSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA--LMLHIDSFIENLFALAGDE--EPEVRK 233 (852)
T ss_dssp HHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH--HHTSHHHHHHHHHHHHTCC--CHHHHH
T ss_pred HhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHcCCC--CHHHHH
Confidence 64322 1233445668888899998889999999999999888764332 2334556788888877665 577778
Q ss_pred HHHHHHHHhhcCCCchhhHHhhHHHHHHHHh-----cchhhHHHHHHHHHHHhcC
Q 012499 398 KAAMILESLVSEPQNRVLLLAYENAFAEILF-----SDGRYSDTFARILYELTSR 447 (462)
Q Consensus 398 rAA~~L~~la~~p~nr~~ll~~E~~l~~i~~-----sD~~~~~~~~~iL~~l~~~ 447 (462)
.|+..|..|++.- ...+.+|=..+....+ .|+.|...-...+..+...
T Consensus 234 ~a~~~L~~l~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 234 NVCRALVMLLEVR--MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHHHHHHHHHC--HHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 8888998888742 1233444333333221 2555655555556655543
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.25 E-value=0.078 Score=57.98 Aligned_cols=195 Identities=19% Similarity=0.223 Sum_probs=129.3
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccc---cCCcchh--hhhcH-
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIF---SSSKQSY--IKITE- 289 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~---~~~~~~~--i~i~~- 289 (462)
+..=||.+| +.--...+ ..-++.|+..+... .+|.|+...+||||-|+-..-+=..- ++..... ...++
T Consensus 42 Av~~Lk~~s--k~y~~~Vg--~~~l~~li~~L~~d-~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 116 (651)
T 3grl_A 42 AVRALKSLS--KKYRLEVG--IQAMEHLIHVLQTD-RSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116 (651)
T ss_dssp HHHHHHHTT--TTTTTHHH--HHTHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred HHHHHHHHH--HHhHHHhh--hhhHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence 466677765 22111112 12244445444433 37889999999999987543221100 0000000 00111
Q ss_pred ----HHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCC--ccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012499 290 ----KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDN--EPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 290 ----~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~N--e~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~ 363 (462)
.--...++.+|.++|-.....++.+|..||.+-.. .+.|+.. |.-+.++|.+|..+.+.++.-++-+|.+|+.
T Consensus 117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~-p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVS-PMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHS-TTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhC-cccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 12356778889999988889999999999987543 3334332 2357899999999889999999999999999
Q ss_pred cCHHHHHHHhcchhHHHHHHHhhcCCCC--ChHHHHHHHHHHHHhhcCC-CchhhHH
Q 012499 364 VNVDCRLKLASERWAIDRLLRVIKTPHP--VPEVCRKAAMILESLVSEP-QNRVLLL 417 (462)
Q Consensus 364 ~~~~~~~~ia~~~~~V~~LV~ll~~~h~--~~em~rrAA~~L~~la~~p-~nr~~ll 417 (462)
-+... .+|..-+++++.|++++..+.+ --.+...+...|.+|.+.- .|..+|.
T Consensus 196 ~n~~i-QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 196 SNGAI-QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp TCHHH-HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHH-HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88877 6777778899999999976533 1347788999999999863 4767764
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.97 E-value=0.65 Score=43.47 Aligned_cols=101 Identities=8% Similarity=-0.036 Sum_probs=50.7
Q ss_pred cchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHH-hhhCCCCHHHHHHHHHHH
Q 012499 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIM-GILGSPFKAWHCAAAELL 315 (462)
Q Consensus 237 ~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~-~~L~S~Dr~~ii~aLE~L 315 (462)
+..+..|+.++.+ ++..+|..+...|+++...-. .. ..++..+. .++..+|......|+++|
T Consensus 53 ~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~------~~--------~~l~~~L~~~~~~d~~~~vr~~a~~aL 115 (280)
T 1oyz_A 53 QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKK------CE--------DNVFNILNNMALNDKSACVRATAIEST 115 (280)
T ss_dssp HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTT------TH--------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccc------cc--------hHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4456666666554 345789999999988874200 00 01122222 123455555556666666
Q ss_pred HHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 012499 316 GRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYN 360 (462)
Q Consensus 316 ~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~ 360 (462)
++++.... ...+.++..++.+|..++..++..++..|.+
T Consensus 116 ~~l~~~~~------~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 116 AQRCKKNP------IYSPKIVEQSQITAFDKSTNVRRATAFAISV 154 (280)
T ss_dssp HHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred HHHhccCC------cccHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 66653221 1112344445555555555555555544443
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.84 E-value=0.7 Score=43.23 Aligned_cols=118 Identities=14% Similarity=-0.012 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
++.++|..+...|++++....- ....++..+..++.++|......|+++|+++...
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~-------------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~----------- 158 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPI-------------YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK----------- 158 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGG-------------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------
T ss_pred CCHHHHHHHHHHHHHHhccCCc-------------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH-----------
Confidence 3457999999999988742210 0123456677778888888888888888887531
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV 407 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la 407 (462)
..+..++.+|..+|..++..++..|-++.. ..+..+..|+.+++++ ++++-+.|+.+|..+.
T Consensus 159 -~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 159 -ATIPLLINLLKDPNGDVRNWAAFAININKY----------DNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHhhcc----------CcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC
Confidence 134556667777777888888877766532 1234566777777654 4555566666666664
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.15 E-value=1.5 Score=46.52 Aligned_cols=183 Identities=13% Similarity=0.139 Sum_probs=117.5
Q ss_pred HHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcC
Q 012499 242 TVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIIN 321 (462)
Q Consensus 242 ~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~ 321 (462)
.+..|+.+ .+..+|..|...+.+|...- ++. +.+..++..+..+|.++|...+..|+.+|+.++..
T Consensus 125 ~l~~~L~d---~~~~VRk~A~~al~~i~~~~------p~~-----~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 125 PLRKCLKD---EDPYVRKTAAVCVAKLHDIN------AQM-----VEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHSSC---SCHHHHHHHHHHHHHHHHSS------CCC-----HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCC---CChHHHHHHHHHHHHHHhhC------hhh-----cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 35555543 34579999999999987621 111 11234678888899999999999999999999987
Q ss_pred CCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHH
Q 012499 322 PDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAM 401 (462)
Q Consensus 322 ~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~ 401 (462)
..... .....+..+.+++..|...+.-++...|++|-.|...+.... ...+..+..++. |.++.+..-|+.
T Consensus 191 ~~~~~-~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~------~~~l~~l~~~l~--~~~~~V~~ea~~ 261 (591)
T 2vgl_B 191 HPNSN-LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA------QSICERVTPRLS--HANSAVVLSAVK 261 (591)
T ss_dssp CCSCC-SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH------HHHHHHHTTCSC--SSTTHHHHHHHH
T ss_pred CCCcc-chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH------HHHHHHHHHHHc--CCChHHHHHHHH
Confidence 54221 344556678888887776778888889998877765443321 234555555554 457788888999
Q ss_pred HHHHhhcCC-CchhhHH----hhHHHHHHHHhcchhhHHHHHHHHHHHhcC
Q 012499 402 ILESLVSEP-QNRVLLL----AYENAFAEILFSDGRYSDTFARILYELTSR 447 (462)
Q Consensus 402 ~L~~la~~p-~nr~~ll----~~E~~l~~i~~sD~~~~~~~~~iL~~l~~~ 447 (462)
++..+...- .+...+- ..=..|..+.-+|+.+.-..-+.|..+...
T Consensus 262 ~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 262 VLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 999987531 2222221 112223333335777666666666666543
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.05 E-value=0.99 Score=46.09 Aligned_cols=167 Identities=19% Similarity=0.155 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHH
Q 012499 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI 335 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i 335 (462)
.+|..+++.++.++..+.-..+ ...++..+..++..++......|+++|+.++..-.+... .+.+
T Consensus 417 ~vr~~~~~~l~~l~~~~~~~~~-----------~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~l 481 (588)
T 1b3u_A 417 RVRLAIIEYMPLLAGQLGVEFF-----------DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA----HATI 481 (588)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGC-----------CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH----HHHT
T ss_pred hHHHHHHHHHHHHHHHcCHHHH-----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH----HHHH
Confidence 4778888888887754432211 123456677778888888888999999999876443321 2446
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchh
Q 012499 336 HKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRV 414 (462)
Q Consensus 336 ~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~-~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~ 414 (462)
+..++.++..++...+..+++++..++.. +.. ...+..+..|+.++.+. ++++=..|+.+|..+++.=....
T Consensus 482 lp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~ 554 (588)
T 1b3u_A 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----ITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHHhchhh
Confidence 66677777778889999999999988773 221 12345677888888766 56777788899999987432211
Q ss_pred hHHhhHHHHHHHHh-cchhhHHHHHHHHHHH
Q 012499 415 LLLAYENAFAEILF-SDGRYSDTFARILYEL 444 (462)
Q Consensus 415 ~ll~~E~~l~~i~~-sD~~~~~~~~~iL~~l 444 (462)
.-=.+.+.|..+.- .|+.|-......|-.+
T Consensus 555 ~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 555 LQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 10122223333211 2666666666666544
No 52
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=93.09 E-value=2.1 Score=43.60 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
++.++|+.+.+++.+++..+.-.. + ...++..+..+..+++......|.++++.++..-.. ...
T Consensus 99 ~~~~vR~~a~~~L~~l~~~~~~~~----------~-~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~-----~~~ 162 (588)
T 1b3u_A 99 EETVVRDKAVESLRAISHEHSPSD----------L-EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-----AVK 162 (588)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCHHH----------H-HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-----HHH
T ss_pred chHHHHHHHHHHHHHHHHHCCHHH----------H-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-----HHH
Confidence 445788889999988887653210 0 012233444444555555556666666666543221 012
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 364 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~ 364 (462)
+.++..+..++..++.+++..++++|..+++.
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~ 194 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKV 194 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 23555555555666666777777777666653
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.84 E-value=0.51 Score=50.58 Aligned_cols=160 Identities=17% Similarity=0.196 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCch
Q 012499 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP 333 (462)
Q Consensus 254 d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~ 333 (462)
|.++|..+|+.+..|+.. .|.. +. .....++.|+..+|......|+|+|.+|+. +.|. .
T Consensus 326 d~~vr~~aL~~L~~i~~~---------~p~~--~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~-~~nv-------~ 384 (618)
T 1w63_A 326 DKNIRYVALTSLLKTVQT---------DHNA--VQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVN-GNNI-------R 384 (618)
T ss_dssp STTTHHHHHHHHHHHHHH---------HHHH--HG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC-SSST-------H
T ss_pred CCchHHHHHHHHHHHHhh---------CHHH--HH--HHHHHHHHHccCCChhHHHHHHHHHHHHcc-cccH-------H
Confidence 346777888888777742 1111 11 123578889999999999999999999976 4453 4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCC--ChHHHHHHHHHHHHhhcCCC
Q 012499 334 QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHP--VPEVCRKAAMILESLVSEPQ 411 (462)
Q Consensus 334 ~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~--~~em~rrAA~~L~~la~~p~ 411 (462)
.+.+.+..++...|.+++..++..+..++.--. ....|.|+.|+.+++.+.. ..|+...-... +.+.|+
T Consensus 385 ~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~------~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~i---i~~~p~ 455 (618)
T 1w63_A 385 GMMKELLYFLDSCEPEFKADCASGIFLAAEKYA------PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQL---ITNSVE 455 (618)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSC------CCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHH---HHHSCS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC------ccHHHHHHHHHHHHHhccchhHHHHHHHHHHH---HhcChh
Confidence 566777888877889999999999998876310 2457889999999976531 22322211111 235677
Q ss_pred chhhHHhhHHHHHHHHh---cchhhHHHHHHHHHHHhc
Q 012499 412 NRVLLLAYENAFAEILF---SDGRYSDTFARILYELTS 446 (462)
Q Consensus 412 nr~~ll~~E~~l~~i~~---sD~~~~~~~~~iL~~l~~ 446 (462)
-+...+.. |...-- .+++....++-||.|++.
T Consensus 456 l~~~~v~~---L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 456 MHAYTVQR---LYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp THHHHHHH---HHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 76655432 222211 234555567777777763
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.61 E-value=0.73 Score=42.57 Aligned_cols=113 Identities=15% Similarity=0.218 Sum_probs=85.4
Q ss_pred cchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 012499 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLG 316 (462)
Q Consensus 237 ~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~ 316 (462)
+.++..|+.++.+. ...+|+.+...+.++.....+ ..++..|...+.+.+......++.+|+
T Consensus 97 ~~ilp~ll~~l~d~---~~~vr~~a~~aL~~~~~~~~~---------------~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 97 SACVPSLLEKFKEK---KPNVVTALREAIDAIYASTSL---------------EAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTSCH---------------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 44555566666543 346999999999998764322 345677888888888888899999999
Q ss_pred HhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHH
Q 012499 317 RLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVD 367 (462)
Q Consensus 317 kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~-~~~ 367 (462)
.+...-.+.....+.++.+...++.+|..++.+++.++.++|-.+... |.+
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 977665444445566677889999999999999999999999988864 554
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.07 E-value=1.2 Score=42.12 Aligned_cols=165 Identities=10% Similarity=-0.009 Sum_probs=107.6
Q ss_pred cchHHHHHhhh-cccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q 012499 237 RHCLETVFQCI-EDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELL 315 (462)
Q Consensus 237 ~~~l~~LLlc~-~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L 315 (462)
..++..|..++ .+.. ..++..++.+++.||..+-...|.. .|. ..++-.|+..+........-.+.++|
T Consensus 59 ~~~~~~L~~~l~~D~n---~~v~~~A~~al~~la~~l~~~~f~~---~y~----~~llp~ll~~l~dkk~~V~~aa~~al 128 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDAN---IQAVALAAQSVELICDKLKTPGFSK---DYV----SLVFTPLLDRTKEKKPSVIEAIRKAL 128 (249)
T ss_dssp HHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHHHHCTTTSCH---HHH----HHHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHhcccccccH---HHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45566666666 3322 2489999999999996553222310 221 34567777777766655656666666
Q ss_pred HHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH-HHHHhcc-hhHHHHHHHhhcCCCCCh
Q 012499 316 GRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC-RLKLASE-RWAIDRLLRVIKTPHPVP 393 (462)
Q Consensus 316 ~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~-~~~ia~~-~~~V~~LV~ll~~~h~~~ 393 (462)
..++.+ .|....-..++.++++++..|..+...+++.++.+|..+..-.... ..-.... +..+..|+.++.+. ++
T Consensus 129 ~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~ 205 (249)
T 2qk1_A 129 LTICKY-YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QP 205 (249)
T ss_dssp HHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SH
T ss_pred HHHHHH-ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CH
Confidence 666654 2222222337789999999999988999999999999988743211 1112345 77899999999766 56
Q ss_pred HHHHHHHHHHHHhhcCCCchh
Q 012499 394 EVCRKAAMILESLVSEPQNRV 414 (462)
Q Consensus 394 em~rrAA~~L~~la~~p~nr~ 414 (462)
++=..|..+|..+.+.=-|+.
T Consensus 206 ~VR~aA~~~l~~i~~~vG~~~ 226 (249)
T 2qk1_A 206 AIRTIGFESFAILIKIFGMNT 226 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCSGG
T ss_pred HHHHHHHHHHHHHHHHhCHHH
Confidence 666666677777776655544
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.47 E-value=5.2 Score=39.27 Aligned_cols=201 Identities=13% Similarity=0.130 Sum_probs=114.9
Q ss_pred chHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q 012499 238 HCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGR 317 (462)
Q Consensus 238 ~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~k 317 (462)
.++..++.++.+.- .+.++|..++.++.++..++.-. . +.. .....++..+...+.+.|-.....++++|..
T Consensus 172 ~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~~~-~--~~~----~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 172 EILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKAN-F--DKE----SERHFIMQVVCEATQCPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHTTTTHHH-H--TSH----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHh-h--hhh----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45566666665431 14579999999999987653211 0 000 0112346667777788888888899999999
Q ss_pred hhcCCCCccccCCCch-HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH-----------------HHHh--cchh
Q 012499 318 LIINPDNEPFLLPFVP-QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR-----------------LKLA--SERW 377 (462)
Q Consensus 318 L~~~~~Ne~~ll~~~~-~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~-----------------~~ia--~~~~ 377 (462)
++.... +.+.+.++ .++..++..+...+.+++..+++++..+++...... ..+. ..+.
T Consensus 244 l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 244 IMSLYY--QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (462)
T ss_dssp HHHHCG--GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence 987653 45556666 677777777777788999999999999987531110 0011 1134
Q ss_pred HHHHHHHhhcCCC-----CChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHH-HHhcchhhHHHHHHHHHHHhcCCC
Q 012499 378 AIDRLLRVIKTPH-----PVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAE-ILFSDGRYSDTFARILYELTSRPN 449 (462)
Q Consensus 378 ~V~~LV~ll~~~h-----~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~-i~~sD~~~~~~~~~iL~~l~~~~~ 449 (462)
.+..|+..+.... .+..+-+-|+..|..|+..-. ...+-..=+.+.. +.-.|.++..-....|-.+..+..
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence 5566666664321 112244456667777766432 1221111111111 111255555556666666665543
No 57
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.43 E-value=5.7 Score=42.63 Aligned_cols=143 Identities=14% Similarity=0.066 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHhhcCCCCcc-ccCCC
Q 012499 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSP-FKAWHCAAAELLGRLIINPDNEP-FLLPF 331 (462)
Q Consensus 254 d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~-Dr~~ii~aLE~L~kL~~~~~Ne~-~ll~~ 331 (462)
++.+|..+-.+++.|+.+.-- ... + .-++..+...+.++ |......++++|+.++..-..+. .+.+.
T Consensus 108 ~~~vr~~~~~~l~~i~~~~~p----~~~-----w--~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 176 (861)
T 2bpt_A 108 EPRIANAAAQLIAAIADIELP----HGA-----W--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS 176 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHGG----GTC-----C--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG
T ss_pred chHHHHHHHHHHHHHHHhhCc----ccc-----c--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH
Confidence 346899999999988865311 111 1 13567778888887 88888899999999997533211 24456
Q ss_pred chHHHHHHHHhcCCc--HHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012499 332 VPQIHKRLVDLMSLP--AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 409 (462)
Q Consensus 332 ~~~i~~rlv~lL~l~--D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~ 409 (462)
.+.++..++..+..+ +.+++..++++|.++...-...-..-...+..+..|..++..+ ++++-+.|...|..++..
T Consensus 177 ~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE--DIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH
Confidence 667888888888876 7899999999999987642211000001123456666665443 555556666777777653
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=91.39 E-value=0.81 Score=52.33 Aligned_cols=158 Identities=12% Similarity=0.102 Sum_probs=102.4
Q ss_pred chHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhC-CCCHHHHHHHHHHHH
Q 012499 238 HCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILG-SPFKAWHCAAAELLG 316 (462)
Q Consensus 238 ~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~-S~Dr~~ii~aLE~L~ 316 (462)
.++..|+.++.+ +++++|..+...++.|+..+.-... ......-.-..++..+..++. +++-.....|+++|+
T Consensus 86 ~i~~~Ll~~l~d---~~~~vR~~a~~~L~~i~~~l~~~~~---~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 86 TIVDTLCTNMLS---DKEQLRDISSIGLKTVIGELPPASS---GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHTTC---SSSHHHHHHHHHHHHHHHHCC--------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCCCccc---ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 455555555433 3346899999999999876543210 000000011356777788887 578888899999999
Q ss_pred HhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHH
Q 012499 317 RLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVC 396 (462)
Q Consensus 317 kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~ 396 (462)
.++..- ...+.++.++++..++..|..++..++..++.+|-.++..-.+.. .+..+..|+..+..... .+.-
T Consensus 160 ~~~~~~--~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-----~~~~l~~l~~~L~~~~~-~~~r 231 (1230)
T 1u6g_C 160 DMLSRQ--GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-----FVDLIEHLLSELSKNDS-MSTT 231 (1230)
T ss_dssp HHHHHT--CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCS-SCSC
T ss_pred HHHHHh--HhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHHHHhccCCc-hhHH
Confidence 998642 234567778899999999988888999999999999998643321 44567777777654421 2223
Q ss_pred HHHHHHHHHhhcC
Q 012499 397 RKAAMILESLVSE 409 (462)
Q Consensus 397 rrAA~~L~~la~~ 409 (462)
+.|...+..+++.
T Consensus 232 ~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 232 RTYIQCIAAISRQ 244 (1230)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666666653
No 59
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=91.34 E-value=3.6 Score=40.04 Aligned_cols=134 Identities=17% Similarity=0.255 Sum_probs=105.4
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
+|+-+.-.|+..+..|-...+|+. .+| ..+.+++...+.+++--...-+.|.|++| -+....
T Consensus 87 ~dEkval~A~r~L~~LLe~vpL~~-----~~y-----~Kl~~aL~dlik~~~~il~~eaae~Lgkl--------kv~~~~ 148 (265)
T 3b2a_A 87 ENEKVTIKALRALGYLVKDVPMGS-----KTF-----LKAAKTLVSLLESPDDMMRIETIDVLSKL--------QPLEDS 148 (265)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCBCH-----HHH-----HHHHHHHHHHTTSCCHHHHHHHHHHHHHC--------CBSCCC
T ss_pred cchhHHHHHHHHHHHHHcCCCCCH-----HHH-----HHHHHHHHHHhcCCCchHHHHHHHHhCcC--------Ccccch
Confidence 566788889999998888888862 245 45678888888999988999999999999 334456
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP 410 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p 410 (462)
+.+...+.+++..+|..+..+++-+|.+++....+. ...+..++.+-.|+.+. ++++..+|=..|+.+.+.|
T Consensus 149 ~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~----~i~~~I~~eI~elL~~e--D~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 149 KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS----GHLTLILDEIPSLLQND--NEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC----CCGGGTTTTHHHHHTCS--CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH----HHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCc
Confidence 779999999999999999999999999998865433 12333445555566666 7888999999999999887
No 60
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=91.17 E-value=1.4 Score=46.57 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=93.7
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
.+.++|+.+--.+++++.. .+... ..+..++..-|.+++......|+++|+++.. .+..
T Consensus 61 ~~~~~Krl~yl~l~~~~~~---------~~e~~----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~--------~~~~ 119 (591)
T 2vgl_B 61 DNLELKKLVYLYLMNYAKS---------QPDMA----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV--------DKIT 119 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHH---------SHHHH----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS--------GGGH
T ss_pred CCHHHHHHHHHHHHHHccc---------CchHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh--------HHHH
Confidence 4456888777677766531 11110 1123566677889998889999999999862 1133
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP 410 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p 410 (462)
+.+...+..+|..++..++..|..+|+.+...+.+.. ...+.+..|..++.+. ++.+..-|+..|..++.+.
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~----~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV----EDQGFLDSLRDLIADS--NPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH----HHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc----ccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhC
Confidence 4467778899999999999999999999988764422 2246889999999865 5667777778888888754
No 61
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=90.63 E-value=1.1 Score=37.52 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=62.9
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh
Q 012499 294 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 373 (462)
Q Consensus 294 ~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia 373 (462)
..+..+|.++|......|+++|+++.. +..+..++.+|..+|..++..++..|-.+.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------- 101 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------- 101 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 556678888898899999999999863 345677777777777899999998887764
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMILE 404 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~ 404 (462)
.+.++..|+.++++. ++++-+.|+..|.
T Consensus 102 -~~~a~~~L~~~l~d~--~~~vr~~A~~aL~ 129 (131)
T 1te4_A 102 -GERVRAAMEKLAETG--TGFARKVAVNYLE 129 (131)
T ss_dssp -SHHHHHHHHHHTTSC--CTHHHHHHHHHGG
T ss_pred -cHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 345788899998754 4555555555543
No 62
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.30 E-value=3.5 Score=37.82 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhhcCcc-ccccccCCcchhhhhcHHHHHHHHHhhhC-CCCHHHHHHHHHHHHHhhcCCCCccccCCCchH
Q 012499 257 LVTNALETIVNLAPLL-DLRIFSSSKQSYIKITEKRAVEAIMGILG-SPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 334 (462)
Q Consensus 257 Lr~~aLdil~nIA~~l-~L~~~~~~~~~~i~i~~~~ll~~l~~~L~-S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~ 334 (462)
.|..+++.+..+...- .+. .. .+ ..++..+...+. .++-.....|+++|+.|+..-.. .+.++.+.
T Consensus 31 ~R~~a~~~L~~l~~~~~~~~---~~--~~-----~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~--~~~~~~~~ 98 (242)
T 2qk2_A 31 LRKESLEVLEKLLTDHPKLE---NG--EY-----GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK--RFSNYASA 98 (242)
T ss_dssp HHHHHHHHHHHHHHHCSSBC---CC--CC-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG--GGHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCC---CC--CH-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh--hHHHHHHH
Confidence 6777887777775431 111 01 11 345677777774 77877888999999999964331 23445566
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh-cC-CC-
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV-SE-PQ- 411 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la-~~-p~- 411 (462)
++..++..+..++..+++++.++|..+.... ..+..+..|...+.+. ++.+=..+...|..+. +. |+
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYAST--------SLEAQQESIVESLSNK--NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCCC
Confidence 8889999999999999999999999987732 2345677777777755 6655555666677743 33 33
Q ss_pred -chhhHHhhHHHHHHHHh-cchhhHHHHHHHHHHHhcCCC
Q 012499 412 -NRVLLLAYENAFAEILF-SDGRYSDTFARILYELTSRPN 449 (462)
Q Consensus 412 -nr~~ll~~E~~l~~i~~-sD~~~~~~~~~iL~~l~~~~~ 449 (462)
..+++-.+-..|....- ++++|-+.-...|..+..-.+
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 23333222233332221 466677777777766654333
No 63
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=90.13 E-value=2.6 Score=45.02 Aligned_cols=92 Identities=13% Similarity=0.060 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH
Q 012499 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 334 (462)
Q Consensus 255 ~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~ 334 (462)
+..|-.||.++++|+.. + +. ..++..|..++.+++......|+.++.+++... -+.+ +.
T Consensus 121 ~~vr~lAL~~L~~i~~~-~-------------~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v----~~ 179 (618)
T 1w63_A 121 QFVQGLALCTLGCMGSS-E-------------MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV--PELM----EM 179 (618)
T ss_dssp SHHHHHHHHHHHHHCCH-H-------------HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGG----GG
T ss_pred HhHHHHHHHHHHhcCCH-H-------------HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHH----HH
Confidence 36899999999999841 1 11 345677888888999999999999999998753 2222 24
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH
Q 012499 335 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD 367 (462)
Q Consensus 335 i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~ 367 (462)
++.++..+|..+|..++..++.+|+.+...+.+
T Consensus 180 ~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 180 FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 566777888888899999999999999876544
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=90.09 E-value=1.1 Score=48.37 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=78.9
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhC-CCCHHHHHHHHHHHHHhhcCCCCccccCCC
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILG-SPFKAWHCAAAELLGRLIINPDNEPFLLPF 331 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~-S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~ 331 (462)
.|.++|-.+|+.+..|+..-. + +.. + ......++.||. ++|.+....++|+|.+|+ ++.|
T Consensus 341 ~~~niry~aL~~l~~l~~~~~------~-~~~--~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~-~~~N------- 401 (621)
T 2vgl_A 341 RETNLRYLALESMCTLASSEF------S-HEA--V--KTHIETVINALKTERDVSVRQRAVDLLYAMC-DRSN------- 401 (621)
T ss_dssp SCHHHHHHHHHHHHHHTTCTT------T-HHH--H--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC-CHHH-------
T ss_pred CCcchHHHHHHHHHHHHhccC------c-HHH--H--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc-Chhh-------
Confidence 456899999999999885321 0 011 1 112466778888 999999999999999997 3333
Q ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHh-cchhHHHHHHHhhcCC
Q 012499 332 VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA-SERWAIDRLLRVIKTP 389 (462)
Q Consensus 332 ~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia-~~~~~V~~LV~ll~~~ 389 (462)
...+..++..++...|.+.+..++..+..++ .+.+ ...|.|+.|+.+++.+
T Consensus 402 v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la-------~k~~~~~~~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 402 AQQIVAEMLSYLETADYSIREEIVLKVAILA-------EKYAVDYTWYVDTILNLIRIA 453 (621)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------HhcCCcHHHHHHHHHHHHHhh
Confidence 3457777777777778888877777666654 3444 5688899999888654
No 65
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=89.20 E-value=8 Score=44.13 Aligned_cols=142 Identities=16% Similarity=0.111 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCc
Q 012499 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 332 (462)
Q Consensus 253 ~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~ 332 (462)
.|...|..|++-+.+.-..=... . ++ -....++..+..+|.+++......|+.+|+.++..-.. +..
T Consensus 18 ~d~~~R~~A~~~L~~~l~~~~~~-~---~~----~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-----~~~ 84 (1230)
T 1u6g_C 18 SDKDFRFMATNDLMTELQKDSIK-L---DD----DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-----YQV 84 (1230)
T ss_dssp SSHHHHHHHHHHHHHHTSSSCCS-C---CT----THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-----HHH
T ss_pred CCHhHHHHHHHHHHHHHcccccC-C---Ch----hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-----HHH
Confidence 56689999987777654321111 1 10 11245677788888888888888999999999864321 234
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHH---HHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDC---RLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS 408 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~-~~~~---~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~ 408 (462)
+.+++.++..|..++..++..+..+|-+++.. +... ...-...+..+..|+..+.. ++++++...|..+|..++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHH
Confidence 55788888888878888899999999888763 2220 00011245567778877764 3356666667777777764
No 66
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=88.95 E-value=3.3 Score=40.73 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=76.5
Q ss_pred HHHHHHhhhCCC--CHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCc--HHHHHHHHHHHHHHhhccCHH
Q 012499 292 AVEAIMGILGSP--FKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLP--AFDAQAAAVGALYNLAEVNVD 367 (462)
Q Consensus 292 ll~~l~~~L~S~--Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~--D~~L~~~aLe~LY~Ls~~~~~ 367 (462)
++..+..++.++ |......|+++|+.++..-. .+.+.+..+.++..++.+|..+ +.+++..++.+|.++...-.+
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC-chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777 88888899999999997432 2234566677889999999887 689999999999997764221
Q ss_pred HHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012499 368 CRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 409 (462)
Q Consensus 368 ~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~ 409 (462)
....-...+-.+..|..++.. +++++-+.|+..|..++..
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQC--PDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHH
Confidence 100000011134455555443 3566777788888887754
No 67
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=88.92 E-value=2 Score=46.34 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHH
Q 012499 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI 335 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i 335 (462)
..|..+.+.+..++..+. . . +. ..++..+...+.+++-....+|+.+|+.++.... .+.+.+..+++
T Consensus 343 ~~r~~a~~~l~~l~~~~~-~----~------~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~~~~~ 409 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE-D----D------IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLVIQA 409 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG-G----G------GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCc-H----h------hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 489999999998886543 1 1 11 2456677778888887788899999999986533 12233456668
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012499 336 HKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 409 (462)
Q Consensus 336 ~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~ 409 (462)
+..++..|..++..++..+..+|-++++.-......--..+..+..|+..+.+ ++.+-..|+.+|.++++.
T Consensus 410 l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA---EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHH
Confidence 88888899888899999999999999875322100012344567777777755 266777788888888865
No 68
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=88.18 E-value=9.9 Score=40.84 Aligned_cols=160 Identities=17% Similarity=0.082 Sum_probs=97.3
Q ss_pred chHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccc-c--c------cc-cC--CcchhhhhcHHHHHHHHHhhhCC---
Q 012499 238 HCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLD-L--R------IF-SS--SKQSYIKITEKRAVEAIMGILGS--- 302 (462)
Q Consensus 238 ~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~-L--~------~~-~~--~~~~~i~i~~~~ll~~l~~~L~S--- 302 (462)
.++.+++.+..+ .+++++..+++.+.+++.... + . +. .+ ....+.+..-..++..++..+..
T Consensus 259 ~l~~~~~~~~~~---~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~ 335 (876)
T 1qgr_A 259 ALFAITIEAMKS---DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE 335 (876)
T ss_dssp THHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccc
Confidence 455555554432 346799999999998876431 0 0 00 00 00011100012334455555532
Q ss_pred ----CCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCH-HHHHHHhcchh
Q 012499 303 ----PFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNV-DCRLKLASERW 377 (462)
Q Consensus 303 ----~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~-~~~~~ia~~~~ 377 (462)
++-.....|.++|+.|+..-. + ..++.++..+...|..++...+.+++.+|.++++.-. +.-. ...+.
T Consensus 336 d~~~~~~~~r~~a~~~l~~l~~~~~-~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~--~~~~~ 408 (876)
T 1qgr_A 336 NDDDDDWNPCKAAGVCLMLLATCCE-D----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK--PLVIQ 408 (876)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHHG-G----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH--HHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHCc-H----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHH--HHHHH
Confidence 222344577777777766533 1 2356778888888888888999999999999987532 2211 23456
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012499 378 AIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 409 (462)
Q Consensus 378 ~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~ 409 (462)
.+..|+..+.+. ++.+-..|+.+|.+++..
T Consensus 409 ~l~~l~~~l~d~--~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 409 AMPTLIELMKDP--SVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHh
Confidence 788888888766 466777888899988875
No 69
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=87.58 E-value=4.1 Score=43.75 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHH
Q 012499 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI 335 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i 335 (462)
.+|..+.+.+..++..+. . . +. ..++..+...+.+.+-....+|+.+|+.++.... .+.+.+.++++
T Consensus 346 ~~r~~a~~~L~~l~~~~~-~----~------~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~i 412 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG-N----H------IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD-KVQRTYYVHQA 412 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG-G----G------GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcc-H----h------HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 688899999988887543 1 1 11 2456777777888887778889999999985432 23445566678
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012499 336 HKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 409 (462)
Q Consensus 336 ~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~ 409 (462)
+..++..+..++..++..++.+|-+++..-...-..-...+..+..|+..+.+. +++-+.|+.+|.++++.
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHh
Confidence 888899988888899999988888877631100000112345567777777542 67778888889888875
No 70
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=85.32 E-value=3.5 Score=34.30 Aligned_cols=86 Identities=22% Similarity=0.164 Sum_probs=63.7
Q ss_pred HHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhc
Q 012499 241 ETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLII 320 (462)
Q Consensus 241 ~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~ 320 (462)
..|+.++.+ ++.++|..+...|+++... ..+..+..++.++|......|.++|+++..
T Consensus 45 ~~L~~~L~d---~~~~vR~~A~~aL~~~~~~-------------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 45 EPLLESLSN---EDWRIRGAAAWIIGNFQDE-------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp HHHHHGGGC---SCHHHHHHHHHHHGGGCSH-------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHhcCCH-------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 445555553 4568999999999998730 123556666777888888999999999862
Q ss_pred CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 012499 321 NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYN 360 (462)
Q Consensus 321 ~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~ 360 (462)
+..+..++.+|..+|..++..+...|.+
T Consensus 103 ------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 ------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4567788888888888899888887653
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=84.19 E-value=2.4 Score=40.19 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH
Q 012499 290 KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC 368 (462)
Q Consensus 290 ~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~ 368 (462)
.-++.-|..++.|+|+..-+.||..++.+..|. -.++.| ++.|+..||...|.+.+..++|.|-+++..+.+.
T Consensus 143 ~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv~P----fLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl 215 (253)
T 2db0_A 143 ASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYVNP----FLPRIINLLHDGDEIVRASAVEALVHLATLNDKL 215 (253)
T ss_dssp HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHHGG----GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--ccccCc----chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence 345677788999999999999999999876553 233444 4568889999999999999999999999999885
No 72
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=80.30 E-value=2.7 Score=39.77 Aligned_cols=115 Identities=5% Similarity=0.129 Sum_probs=77.7
Q ss_pred hHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHh
Q 012499 239 CLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRL 318 (462)
Q Consensus 239 ~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL 318 (462)
++..++..+.+. ...+++.+-..+.++...++-.. .. .....++..|+.+|.+........++.+|+++
T Consensus 105 llp~ll~~l~dk---k~~V~~aa~~al~~i~~~~~~~~---~~-----~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 105 VFTPLLDRTKEK---KPSVIEAIRKALLTICKYYDPLA---SS-----GRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp HHHHHHHGGGCC---CHHHHHHHHHHHHHHHHHSCTTC---TT-----CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHccccc---cC-----CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 344445444432 13566666666665555432110 00 00134677888889988888899999999998
Q ss_pred hcCCCCc-cccCCCc-hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012499 319 IINPDNE-PFLLPFV-PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 364 (462)
Q Consensus 319 ~~~~~Ne-~~ll~~~-~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~ 364 (462)
+..-... ..+.+.+ +++...++.+|...+.+++.++.++|-.+...
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 8764322 3455566 78899999999999999999999999888763
No 73
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=77.14 E-value=33 Score=38.23 Aligned_cols=157 Identities=9% Similarity=0.085 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCC---------Cc
Q 012499 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPD---------NE 325 (462)
Q Consensus 255 ~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~---------Ne 325 (462)
.-+|.-++.+++.++..+ . +.+ -..++..++.+|.+++.-....|.-+|.+++...+ ..
T Consensus 472 p~vr~~a~~~lg~~~~~~--~------~~~----l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~ 539 (960)
T 1wa5_C 472 IILRVDAIKYIYTFRNQL--T------KAQ----LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHK 539 (960)
T ss_dssp HHHHHHHHHHHHHTGGGS--C------HHH----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCG
T ss_pred ceehHHHHHHHHHHHhhC--C------HHH----HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccH
Confidence 357888999999888764 1 111 13467778888888888788999999999987532 34
Q ss_pred cccCCCchHHHHHHHHhcCCc-----HHHHHHHHHHHHHHhhcc-CHHHHHHHhcchhHHHHHHHhhcC--CCC-ChHHH
Q 012499 326 PFLLPFVPQIHKRLVDLMSLP-----AFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKT--PHP-VPEVC 396 (462)
Q Consensus 326 ~~ll~~~~~i~~rlv~lL~l~-----D~~L~~~aLe~LY~Ls~~-~~~~~~~ia~~~~~V~~LV~ll~~--~h~-~~em~ 396 (462)
+.+.++++++++.++.++.-. +..-.+..+++|..+.+. ++.. . -.....+.+|+..+.. .++ ++...
T Consensus 540 ~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~-~--p~~~~l~~~L~~~l~~~~~~~~~~~~~ 616 (960)
T 1wa5_C 540 EDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI-Q--PLFPQLLAQFIEIVTIMAKNPSNPRFT 616 (960)
T ss_dssp GGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT-G--GGHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhh-h--hHHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 668899999999999998653 222335666666665542 2211 1 1223345555555422 122 34433
Q ss_pred HHHHHHHHHhhcCCCchhhHHhhHHHHHHHH
Q 012499 397 RKAAMILESLVSEPQNRVLLLAYENAFAEIL 427 (462)
Q Consensus 397 rrAA~~L~~la~~p~nr~~ll~~E~~l~~i~ 427 (462)
-.+-.+|..+++. .++..+.+||+.+..+.
T Consensus 617 ~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~ 646 (960)
T 1wa5_C 617 HYTFESIGAILNY-TQRQNLPLLVDSMMPTF 646 (960)
T ss_dssp HHHHHHHHHHHHT-SCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCcchHHHHHHHHHHHH
Confidence 3455555566655 44556788888877754
No 74
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=74.78 E-value=22 Score=38.05 Aligned_cols=102 Identities=12% Similarity=0.120 Sum_probs=67.3
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcC-CcHHHHHHHHHHHHHHhhccCHHHHH
Q 012499 292 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS-LPAFDAQAAAVGALYNLAEVNVDCRL 370 (462)
Q Consensus 292 ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~-l~D~~L~~~aLe~LY~Ls~~~~~~~~ 370 (462)
....+...|.++|......||++|.+++......+.+.+ ....++..|. .+|..++.-+|+.||.++.- .
T Consensus 330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~----~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~--- 400 (621)
T 2vgl_A 330 ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT----HIETVINALKTERDVSVRQRAVDLLYAMCDR--S--- 400 (621)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHT----THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--H---
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHH----HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--h---
Confidence 345555667778888888888888888876532222211 3445667777 88999999999999999742 2
Q ss_pred HHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 012499 371 KLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV 407 (462)
Q Consensus 371 ~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la 407 (462)
+....|..|..+++.. +.++-+.+...+..++
T Consensus 401 ---Nv~~Iv~eL~~yl~~~--d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 401 ---NAQQIVAEMLSYLETA--DYSIREEIVLKVAILA 432 (621)
T ss_dssp ---HHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHH
Confidence 2345667777777554 4555555555555554
No 75
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=74.60 E-value=7.4 Score=38.45 Aligned_cols=117 Identities=9% Similarity=0.089 Sum_probs=80.5
Q ss_pred HHHHHHhhhCCC-CHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH
Q 012499 292 AVEAIMGILGSP-FKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL 370 (462)
Q Consensus 292 ll~~l~~~L~S~-Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~ 370 (462)
++.++...+.++ .-..++.++++++++..++...+.+....+++++.+...+..++..++.++--++||||-...+..
T Consensus 148 l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~- 226 (304)
T 3ebb_A 148 FSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDH- 226 (304)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSC-
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcC-
Confidence 344555555432 334589999999999999988877777677799999988877778899999999999998632211
Q ss_pred HHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q 012499 371 KLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP 410 (462)
Q Consensus 371 ~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p 410 (462)
.+-....++.-+..+++.. .++|..-|+-.+|=+|...+
T Consensus 227 ~~~~~~~ll~~l~~il~~~-~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 227 NIEGKAQCLSLISTILEVV-QDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp CHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhCC
Confidence 0001111233333444433 36899999999998888764
No 76
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=72.42 E-value=29 Score=37.43 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCc--cccC--
Q 012499 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNE--PFLL-- 329 (462)
Q Consensus 254 d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne--~~ll-- 329 (462)
|.+.|+.|+-+++||+.. =. ..... .-.+.+...|..+|..++......|..+|++||..++.. +.+.
T Consensus 47 ~~~~r~~A~~al~~l~~~--~~----~~~l~--~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 47 DAKSRTTAAGAIANIVQD--AK----CRKLL--LREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp CCSHHHHHHHHHHHHTTS--HH----HHHHH--HHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcC--cH----HHHHH--HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 446899999999999841 00 00000 011122223445677889999999999999999875421 1111
Q ss_pred CCchH---HHHHHHH----hcCCcH----------HHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCC-
Q 012499 330 PFVPQ---IHKRLVD----LMSLPA----------FDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHP- 391 (462)
Q Consensus 330 ~~~~~---i~~rlv~----lL~l~D----------~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~- 391 (462)
..++. .++.+.. +....+ .++.+-++.+|.+|++.+.++...+... +.|..|+.++...+.
T Consensus 119 ~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~-~~l~~l~~~L~~~~~~ 197 (684)
T 4gmo_A 119 DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK-QTILRLLFRLISADIA 197 (684)
T ss_dssp THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC-HHHHHHHHHHHHHCCS
T ss_pred ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc-ccHHHHHHHHHhcCCC
Confidence 12222 2222221 111111 1345567788888998888887677654 578888877744432
Q ss_pred ChHHHHHHHHHHHHhhcC
Q 012499 392 VPEVCRKAAMILESLVSE 409 (462)
Q Consensus 392 ~~em~rrAA~~L~~la~~ 409 (462)
+.++..-|+..|..|+..
T Consensus 198 ~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 198 PQDIYEEAISCLTTLSED 215 (684)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhcc
Confidence 467888889999888764
No 77
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=69.22 E-value=29 Score=32.47 Aligned_cols=172 Identities=12% Similarity=-0.033 Sum_probs=87.8
Q ss_pred hhhhhhcCCCCCccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHH
Q 012499 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEA 295 (462)
Q Consensus 216 ~s~ILRNLSf~p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~ 295 (462)
+..++.+.......+..+.....+...+-.++.+... .+.+.+++++..++..+..... ........-..++..
T Consensus 33 l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~---~v~~~al~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 106 (278)
T 4ffb_C 33 LNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV---VAQEQAIVALNSLIDAFASSSL---KNAHNITLISTWTPL 106 (278)
T ss_dssp HHHHHHTC----------CCTTSCTHHHHHHTTCSSH---HHHHHHHHHHHHHHTTCC---C---CHHHHHHHHHHHHHH
T ss_pred HHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHHHHHhhhhhc---ccchhHHHHHHHHHH
Confidence 3455555443333333322223333333334444333 4788899999988876665421 000000011233444
Q ss_pred HH-hhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHHHHh
Q 012499 296 IM-GILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRLKLA 373 (462)
Q Consensus 296 l~-~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~-~~~~~~~ia 373 (462)
|+ .++.+......-.|++++..++.... ....+.+.++..+..+..-++..|+.+|+.+..- |.....--.
T Consensus 107 lveK~l~~~k~~~~~~a~~~l~~~~~~~~-------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~ 179 (278)
T 4ffb_C 107 LVEKGLTSSRATTKTQSMSCILSLCGLDT-------SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQT 179 (278)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHTSS-------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchh
Confidence 44 46777776777778888888764432 2234677788888888899999999999987652 322110000
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHH
Q 012499 374 SERWAIDRLLRVIKTPHPVPEVCRKAAMIL 403 (462)
Q Consensus 374 ~~~~~V~~LV~ll~~~h~~~em~rrAA~~L 403 (462)
..+..+..|..++++. +++ +|.||..+
T Consensus 180 ~l~~i~~~l~k~l~d~--~~~-VR~aA~~l 206 (278)
T 4ffb_C 180 FLPELLKHVPQLAGHG--DRN-VRSQTMNL 206 (278)
T ss_dssp HHHHHGGGHHHHHTCS--SHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--cHH-HHHHHHHH
Confidence 1122333455555555 443 46666544
No 78
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=69.01 E-value=19 Score=36.38 Aligned_cols=125 Identities=12% Similarity=0.078 Sum_probs=86.4
Q ss_pred CccHHHHhhCcchHHHHHhhhcccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHH
Q 012499 227 PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKA 306 (462)
Q Consensus 227 p~N~~~LA~~~~~l~~LLlc~~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~ 306 (462)
+.=+.++...-++ ..|+.++... +.+...|+|-.|.+|.-+.+=..- . +..-.+.+.|...+.|.++.
T Consensus 150 ~~Fa~EFI~~~GL-~~Li~vi~~~---~gN~q~Y~L~AL~~LM~~v~Gm~g---v-----vs~~~fI~~lyslv~s~~~~ 217 (339)
T 3dad_A 150 KDLVPEFVHSEGL-SCLIRVGAAA---DHNYQSYILRALGQLMLFVDGMLG---V-----VAHSDTIQWLYTLCASLSRL 217 (339)
T ss_dssp TTHHHHHHHTTHH-HHHHHHHTTS---CHHHHHHHHHHHHHHTTSHHHHHH---H-----HHCHHHHHHHHHGGGCSCHH
T ss_pred hHHHHHHHHhccH-HHHHHHHHhc---ChHHHHHHHHHHHHHHhccccccc---h-----hCCHHHHHHHHHHHcCccHH
Confidence 3445667777773 3344444332 457899999999999887443310 0 11123567778888899999
Q ss_pred HHHHHHHHHHHhhcCC-CCccccCCCch--------HHHHHHHHhcC---CcHHHHHHHHHHHHHHhhc
Q 012499 307 WHCAAAELLGRLIINP-DNEPFLLPFVP--------QIHKRLVDLMS---LPAFDAQAAAVGALYNLAE 363 (462)
Q Consensus 307 ~ii~aLE~L~kL~~~~-~Ne~~ll~~~~--------~i~~rlv~lL~---l~D~~L~~~aLe~LY~Ls~ 363 (462)
.+..||++|..++... .|-.++..... ..|+.+|.+|. ..|.+++.+++-++-.+-.
T Consensus 218 V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~ 286 (339)
T 3dad_A 218 VVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLA 286 (339)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999885 46665544332 14889999996 6789999998888765544
No 79
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=67.39 E-value=27 Score=35.25 Aligned_cols=118 Identities=19% Similarity=0.114 Sum_probs=83.4
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHH
Q 012499 294 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 372 (462)
Q Consensus 294 ~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~-i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~i 372 (462)
+.|.+.|.+++....+.+|--|.++-+.| +++..+|+.. =+..|+....--+...+.|+|-+|-+|-.. .+-...|
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D--~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gv 197 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQED--KDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGV 197 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTC--TTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcc--hHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccch
Confidence 44455556666677888888888855432 4555555543 244566666666889999999999999875 2222345
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC-chhhH
Q 012499 373 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ-NRVLL 416 (462)
Q Consensus 373 a~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p~-nr~~l 416 (462)
...+..|..+++++.. ....|+|.|-.+|+.++...+ |-+++
T Consensus 198 vs~~~fI~~lyslv~s--~~~~V~k~AL~LL~v~V~~se~~~~lv 240 (339)
T 3dad_A 198 VAHSDTIQWLYTLCAS--LSRLVVKTALKLLLVFVEYSENNAPLF 240 (339)
T ss_dssp HHCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred hCCHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHccCcccchHH
Confidence 5578899999999995 357799999999999988765 44443
No 80
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=65.18 E-value=8.3 Score=37.00 Aligned_cols=165 Identities=15% Similarity=0.091 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCC-CccccCCC--chH
Q 012499 258 VTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPF--VPQ 334 (462)
Q Consensus 258 r~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~-Ne~~ll~~--~~~ 334 (462)
+-=+||++--++.+-... + .+...+...+.+.....++.++++++++..++. ...++..- ..+
T Consensus 71 ~fP~lDllRl~~~~~~~~----~----------~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~ 136 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS----S----------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKS 136 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG----G----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTT
T ss_pred cchHHHHHHHHHcCCchH----H----------HHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHH
Confidence 334888888777654432 1 122333344555667789999999999999988 56555542 122
Q ss_pred HHHHHHHhcCC----cHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcC--CC-----CChHHHHHHHHHH
Q 012499 335 IHKRLVDLMSL----PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKT--PH-----PVPEVCRKAAMIL 403 (462)
Q Consensus 335 i~~rlv~lL~l----~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~--~h-----~~~em~rrAA~~L 403 (462)
+++++..-+.- +...++.+.--++||||-...... ........++..+.. |. .++|..-|+-.+|
T Consensus 137 i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~----~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAl 212 (253)
T 3gae_A 137 IFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN----SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAY 212 (253)
T ss_dssp HHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC----SCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence 33433332211 345788888889999987422110 112244455555532 21 2578888888887
Q ss_pred HHhhcCCCchhhHHhhHHHHHHH---HhcchhhHHHHHHH
Q 012499 404 ESLVSEPQNRVLLLAYENAFAEI---LFSDGRYSDTFARI 440 (462)
Q Consensus 404 ~~la~~p~nr~~ll~~E~~l~~i---~~sD~~~~~~~~~i 440 (462)
=+|...+..--.+-.=-.-+..+ ..+++|+.+++++|
T Consensus 213 GtL~~~~~~~~~~a~~~~~~~~~~~~~~~e~R~~~v~~ei 252 (253)
T 3gae_A 213 GNLATVEPTLRQFANSVTWLANIKRSYGNVPRFKDIFDDL 252 (253)
T ss_dssp HHHHHHSGGGGCCTTTCHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHhccHHHHHHHHHHcccchHHHHHHHhc
Confidence 77765332111110000112222 23688888888776
No 81
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=63.37 E-value=54 Score=36.02 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHH
Q 012499 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI 335 (462)
Q Consensus 256 eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i 335 (462)
.+|..++.+++..+.++.- ++.++ ..++..|..++.. ......|..++.+||.. -...+.++.+++
T Consensus 504 ~vr~~~~~~l~~~~~~l~~------~~~~l----~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~i 569 (963)
T 2x19_B 504 QLADTVMFTIGALSEWLAD------HPVMI----NSVLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANI 569 (963)
T ss_dssp HHHHHHHHHHHHTHHHHHH------CHHHH----TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh------CHHHH----HHHHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHH
Confidence 4777788888877764431 11221 1234555666643 45667788888888853 345678999999
Q ss_pred HHHHHHhcCCc--HHHHHHHHHHHHHHhhc
Q 012499 336 HKRLVDLMSLP--AFDAQAAAVGALYNLAE 363 (462)
Q Consensus 336 ~~rlv~lL~l~--D~~L~~~aLe~LY~Ls~ 363 (462)
++.+..++.-+ +...+...++++-.++.
T Consensus 570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 99988888632 45778888888888765
No 82
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=53.80 E-value=1.2e+02 Score=29.06 Aligned_cols=108 Identities=9% Similarity=0.141 Sum_probs=77.2
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012499 290 KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 369 (462)
Q Consensus 290 ~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~ 369 (462)
..+...+-+.-...| ...+..|.-...|+.+.+. .+.|++++.+..+-.-++.+++-.+.+|+.....
T Consensus 15 ~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp-----~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~------ 82 (257)
T 3gs3_A 15 AKVVDWCNELVIASP-STKCELLAKVQETVLGSCA-----ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK------ 82 (257)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTG-----GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCH-----hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH------
Confidence 344555555434455 5778888888888877542 3567888888888877899999999999987763
Q ss_pred HHHhcchhHHHHHHHhhcCCCCChHHHHHHHHH--------HHHhhcCCC
Q 012499 370 LKLASERWAIDRLLRVIKTPHPVPEVCRKAAMI--------LESLVSEPQ 411 (462)
Q Consensus 370 ~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~--------L~~la~~p~ 411 (462)
.+.-....+|+.|..++.++ ++.+.|+|-.+ |..+++.|.
T Consensus 83 ~k~~l~~~~l~~L~~Ll~d~--d~~V~K~~I~~~~~iY~~~l~~i~~~~~ 130 (257)
T 3gs3_A 83 VKVELLPHVINVVSMLLRDN--SAQVIKRVIQACGSIYKNGLQYLCSLME 130 (257)
T ss_dssp HCGGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34456677889999999854 67778887654 455677665
No 83
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=52.17 E-value=43 Score=38.03 Aligned_cols=108 Identities=13% Similarity=-0.045 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhcCCCCccc----cCCCchHHHHHHHHhcC-----CcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhH
Q 012499 308 HCAAAELLGRLIINPDNEPF----LLPFVPQIHKRLVDLMS-----LPAFDAQAAAVGALYNLAEVNVDCRLKLASERWA 378 (462)
Q Consensus 308 ii~aLE~L~kL~~~~~Ne~~----ll~~~~~i~~rlv~lL~-----l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~ 378 (462)
+-+||-+|+.++..-.|.-. ..+..|++.+-++.++. .+...++..+.+++-.|++ .++.++..
T Consensus 460 ~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~-------~~~~~~~~ 532 (980)
T 3ibv_A 460 IEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYAS-------FFDYESAA 532 (980)
T ss_dssp HHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGG-------GGGTCCTT
T ss_pred HHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH-------HHhcCchh
Confidence 56788888887766444221 22456777666666654 5667899999999999998 44556677
Q ss_pred HHHHHHhhcC--C--CCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHH
Q 012499 379 IDRLLRVIKT--P--HPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFA 424 (462)
Q Consensus 379 V~~LV~ll~~--~--h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~ 424 (462)
+..++..+-. | |+++.+-.+|+..+.++.+. .|+.+.||=..++
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~--~~~~L~~~~~~il 580 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS--IKKQVVNYTESSL 580 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH--TTTTCSSSHHHHH
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH--hhHHhhhHHHHHH
Confidence 8888777765 4 56777899999999999874 5666767633333
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=49.61 E-value=1.8e+02 Score=29.04 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=56.2
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012499 292 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 371 (462)
Q Consensus 292 ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ 371 (462)
+...+-++|.+.+-.....|+=+..||... +-+.+- .++..+-+++.-++.+.+..++.+||.+.+.+..+-.+
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe~v~----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~k 213 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFDVVK----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSK 213 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHHHHH----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHHHHH----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHH
Confidence 344455666666666666666666655432 222221 14556777888888899999999999999877544433
Q ss_pred Hhc--------chhHHHHHHHhh
Q 012499 372 LAS--------ERWAIDRLLRVI 386 (462)
Q Consensus 372 ia~--------~~~~V~~LV~ll 386 (462)
+.. .+|+.=.|++++
T Consensus 214 Lv~~l~~~~l~~~~~q~~llr~l 236 (355)
T 3tjz_B 214 MISKFTRHGLKSPFAYCMMIRVA 236 (355)
T ss_dssp HHHHHHSSCCSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcChHHHHHHHHHH
Confidence 321 267766677765
No 85
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=49.46 E-value=23 Score=38.30 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=52.1
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHH-HhhcCCCCChHHHHHHHHHHHHhhcCC
Q 012499 339 LVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLL-RVIKTPHPVPEVCRKAAMILESLVSEP 410 (462)
Q Consensus 339 lv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV-~ll~~~h~~~em~rrAA~~L~~la~~p 410 (462)
+++.|..+|...+..++.+|.+|++ +... +++...++.|..++ .++.+. +.++...||.+|.+|+.+.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~~~~-~~l~~~~~~v~~ll~~lL~D~--~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-DAKC-RKLLLREQVVHIVLTETLTDN--NIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-SHHH-HHHHHHTTHHHHHHHTTTTCS--CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-CcHH-HHHHHHcCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhhc
Confidence 4455778899999999999999997 5555 44555666777665 566655 7889999999999998663
No 86
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=48.09 E-value=89 Score=32.39 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHH
Q 012499 258 VTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHK 337 (462)
Q Consensus 258 r~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~ 337 (462)
+--+||++--++.+..-. + .+...|...+.+......+.++++|+++..++.=-..+..- +.++.
T Consensus 243 ~FPaLDLLRl~v~~p~~~----~----------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~-~~~~~ 307 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS----S----------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLES-NQVYK 307 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG----G----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTS-HHHHH
T ss_pred ccHHHHHHHHHHcCCchH----H----------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhC-chhHH
Confidence 344788887776554322 1 12233334455667788999999999999988632222221 23455
Q ss_pred HHHHhcC--C------cHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhc--CC-----CCChHHHHHHHHH
Q 012499 338 RLVDLMS--L------PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIK--TP-----HPVPEVCRKAAMI 402 (462)
Q Consensus 338 rlv~lL~--l------~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~--~~-----h~~~em~rrAA~~ 402 (462)
.+++.+. + +...++.+.=-++||||........ ...++..++..+. .+ ..++|.+.|+..+
T Consensus 308 ~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~----~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVA 383 (425)
T 3pst_A 308 SIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVA 383 (425)
T ss_dssp HHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS----CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHH
Confidence 6665553 1 2446888888899999985332111 1123344444443 12 1267888888888
Q ss_pred HHHhhcCC-CchhhHHhhHHHHHHHH---hcchhhHHHHHHH
Q 012499 403 LESLVSEP-QNRVLLLAYENAFAEIL---FSDGRYSDTFARI 440 (462)
Q Consensus 403 L~~la~~p-~nr~~ll~~E~~l~~i~---~sD~~~~~~~~~i 440 (462)
|=+|.... +=+... .--.-+..+. ..++|+.+++++|
T Consensus 384 LGtLv~~~~~~~~~a-~~~~~~~~~~~~~~~e~R~~~v~~ei 424 (425)
T 3pst_A 384 YGNLATVEPTLRQFA-NSVTWLANIKRSYGNVPRFKDIFDDL 424 (425)
T ss_dssp HHHHHHHCHHHHHHH-TTCHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHh-cCHHHHHHHHHhcccchHHHHHHHhc
Confidence 87777432 212111 0001122222 3588888888765
No 87
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=43.52 E-value=1.2e+02 Score=30.96 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=69.2
Q ss_pred HHHHHHHHhh-hCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH
Q 012499 290 KRAVEAIMGI-LGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC 368 (462)
Q Consensus 290 ~~ll~~l~~~-L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~ 368 (462)
..+...|-+. +.+++ ..+..|.-+..|..+.+ -. .+++++..|+++-..++.+++-.+.+||.....
T Consensus 25 ~~v~~lln~A~~~~~~--~Kl~~L~q~~EL~l~~d-ps----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~----- 92 (386)
T 3o2t_A 25 ERVVDLLNQAALITND--SKITVLKQVQELIINKD-PT----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK----- 92 (386)
T ss_dssp HHHHHHHHHHHHCCST--HHHHHHHHHHHHHHTTC-GG----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhhhccChH--HHHHHHHHHHHHHhccC-HH----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-----
Confidence 4455555443 23433 56777777777666532 22 456678888899888999999999999975443
Q ss_pred HHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012499 369 RLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESL 406 (462)
Q Consensus 369 ~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~l 406 (462)
...-....+|+.|..|+.++ ++.+.|+|-.+..++
T Consensus 93 -~~~el~~~~l~~L~~LL~d~--d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 93 -RDIELLLKLIANLNMLLRDE--NVNVVKKAILTMTQL 127 (386)
T ss_dssp -HCGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 33444577888898999854 677888877665543
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=40.17 E-value=1.1e+02 Score=33.79 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcC-CcHHHHHHHHHHHHHHhhcc-CHHHHHHHhcchhHHH
Q 012499 303 PFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS-LPAFDAQAAAVGALYNLAEV-NVDCRLKLASERWAID 380 (462)
Q Consensus 303 ~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~-l~D~~L~~~aLe~LY~Ls~~-~~~~~~~ia~~~~~V~ 380 (462)
.+-...-+|+-+++.++..-.... .+.++++++-+..+.. -++..++..++.+|.+|+.. .... ..-+..+.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~--~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~----~~l~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE--KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP----AYIPPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHH
Confidence 343445667777777765532111 2455666663333332 13678999999999999974 2211 23445667
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHHH
Q 012499 381 RLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAE 425 (462)
Q Consensus 381 ~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~~ 425 (462)
.|+..+. +.+...||.++..+++. .+..+.||=..+.+
T Consensus 550 ~l~~~l~-----~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~ 587 (971)
T 2x1g_F 550 LLVRGLN-----SSMSAQATLGLKELCRD--CQLQLKPYADPLLN 587 (971)
T ss_dssp HHHHHHH-----SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHH
T ss_pred HHHHHhC-----hHHHHHHHHHHHHHHHH--HHHhccccHHHHHH
Confidence 7776662 45789999999999954 45566666444433
No 89
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=39.81 E-value=1.1e+02 Score=34.75 Aligned_cols=73 Identities=5% Similarity=0.011 Sum_probs=49.2
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH
Q 012499 293 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL 370 (462)
Q Consensus 293 l~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~ 370 (462)
+..+..+..+++...+..+|+||+....--. ..++.. +.+++-++.+|. +.+++++|+|||..+..-+++...
T Consensus 195 ~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~--~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~ 267 (980)
T 3ibv_A 195 YEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVN--EPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLE 267 (980)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHC--HHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhc--chHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhh
Confidence 4444445445666778999999999776211 222222 346777777775 478999999999999987655443
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=39.21 E-value=1.2e+02 Score=29.29 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCccccCCCchH
Q 012499 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 334 (462)
Q Consensus 255 ~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~ 334 (462)
+.+|+.+-+++..+.. .+ ++..++..++.++.|..--....|++.++.+....+=. ...
T Consensus 146 ~~vR~~~r~il~~l~~-----v~----------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~------~~~ 204 (266)
T 2of3_A 146 DNMRTSVRDIVNVLSD-----VV----------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS------PLK 204 (266)
T ss_dssp HHHHHHHHHHHHHHHH-----HH----------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG------GGG
T ss_pred HHHHHHHHHHHHHHHH-----HC----------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC------ccc
Confidence 3578888887766542 11 22456788888998888666788888888886664422 122
Q ss_pred HH---HHHHHhcCCcHHHHHHHHHHHHHHhhc-cCHHHHH
Q 012499 335 IH---KRLVDLMSLPAFDAQAAAVGALYNLAE-VNVDCRL 370 (462)
Q Consensus 335 i~---~rlv~lL~l~D~~L~~~aLe~LY~Ls~-~~~~~~~ 370 (462)
.+ ..++.++..+|..++.+|+.++..+=. +|+....
T Consensus 205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34 889999999999999999999874333 4666543
No 91
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=38.92 E-value=85 Score=34.43 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=66.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHH
Q 012499 301 GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAID 380 (462)
Q Consensus 301 ~S~Dr~~ii~aLE~L~kL~~~~~Ne~~ll~~~~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~ 380 (462)
.+.+-...-+++-+++.++..-.- ...+.++++++-+.++. .+...++..++.++.+++..-..- -..-+..+.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~--~~~~~l~~l~~~l~~l~-~~~~~vr~~~~~~l~~~~~~l~~~---~~~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV--NYSDVVPGLIGLIPRIS-ISNVQLADTVMFTIGALSEWLADH---PVMINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS--SCCSHHHHHHHHGGGSC-CCSHHHHHHHHHHHHHTHHHHHHC---HHHHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc--hhhHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHhC---HHHHHHHHH
Confidence 445544556677777777655321 11234455555333322 245679999999999998731110 012345566
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhhcCCCchhhHHhhHHHHH
Q 012499 381 RLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFA 424 (462)
Q Consensus 381 ~LV~ll~~~h~~~em~rrAA~~L~~la~~p~nr~~ll~~E~~l~ 424 (462)
.|+..+.. +.+...|+.+|..+++. .+..+.||=..+.
T Consensus 533 ~l~~~l~~----~~V~~~A~~al~~l~~~--~~~~l~p~~~~il 570 (963)
T 2x19_B 533 LVLHALGN----PELSVSSVSTLKKICRE--CKYDLPPYAANIV 570 (963)
T ss_dssp HHHHHTTC----GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHH
T ss_pred HHHHHhCC----chHHHHHHHHHHHHHHH--HHHHHHhhHHHHH
Confidence 77766632 67888999999999863 4555666544443
No 92
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=38.32 E-value=39 Score=34.25 Aligned_cols=168 Identities=13% Similarity=0.079 Sum_probs=93.9
Q ss_pred cccCCChHHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCC-cc
Q 012499 248 EDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDN-EP 326 (462)
Q Consensus 248 ~~~~~~d~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~N-e~ 326 (462)
..+|+. +--+||++--++.+..-.+ + +...|...+.+......+.++++++++..++.= ..
T Consensus 174 ~~~Wp~----~FP~LDLLRl~v~~~~~~~-------~-------l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ 235 (362)
T 3l3f_X 174 RSNWEI----KTPAYDIVRLIVKKLPYSS-------D-------IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVK 235 (362)
T ss_dssp HHHCSC----CHHHHHHHHHHGGGCSCGG-------G-------GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHH
T ss_pred HhhCCc----cchHHHHHHHHhcCCChHH-------H-------HHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHH
Confidence 455662 5559999998887654331 1 223333444556678899999999999998863 22
Q ss_pred ccCCCchHHHHHHHHhcC--------CcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhc--CC-----CC
Q 012499 327 FLLPFVPQIHKRLVDLMS--------LPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIK--TP-----HP 391 (462)
Q Consensus 327 ~ll~~~~~i~~rlv~lL~--------l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~--~~-----h~ 391 (462)
++.. +.++..+++.+. -+...++.+.=-++||||........ ....+..++..+. .+ ..
T Consensus 236 ll~~--~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~----~~el~~~l~~~l~~~~g~~E~~~~ 309 (362)
T 3l3f_X 236 LLES--NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQE 309 (362)
T ss_dssp HHTS--HHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS----CTTHHHHHHHHHHHTTTTSHHHHT
T ss_pred HHhc--chhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHhhccccccccC
Confidence 3321 113444444441 12446888888899999985332211 1223344555443 11 12
Q ss_pred ChHHHHHHHHHHHHhhcCC-CchhhHHhhHHHHHHHH---hcchhhHHHHHHH
Q 012499 392 VPEVCRKAAMILESLVSEP-QNRVLLLAYENAFAEIL---FSDGRYSDTFARI 440 (462)
Q Consensus 392 ~~em~rrAA~~L~~la~~p-~nr~~ll~~E~~l~~i~---~sD~~~~~~~~~i 440 (462)
++|.+.|+-.+|=+|...+ +=+... .--.-+..+. .+++|+.+++++|
T Consensus 310 d~EA~yRlLVALGtL~~~~~~~~~~a-~~~~~~~~~~~~~~~e~R~~~v~~ei 361 (362)
T 3l3f_X 310 CEEAAYRLTVAYGNLATVEPTLRQFA-NSVTWLANIKRSYGNVPRFKDIFDDL 361 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHTG-GGCHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHh-cCHHHHHHHHHhcccchHHHHHHHhc
Confidence 6788888888887777532 111111 0001122222 3588888877765
No 93
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=36.33 E-value=4.7e+02 Score=28.79 Aligned_cols=117 Identities=14% Similarity=0.036 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCcc-ccC---C--CchH-HHHHHHHhcCCc---HHHHHHHHHHHHHHhhccCHHHHHH
Q 012499 302 SPFKAWHCAAAELLGRLIINPDNEP-FLL---P--FVPQ-IHKRLVDLMSLP---AFDAQAAAVGALYNLAEVNVDCRLK 371 (462)
Q Consensus 302 S~Dr~~ii~aLE~L~kL~~~~~Ne~-~ll---~--~~~~-i~~rlv~lL~l~---D~~L~~~aLe~LY~Ls~~~~~~~~~ 371 (462)
++|=...-+|+-+++.++..-...+ ... + -+.+ +.+.++..|..+ ...++..++.+|.++++.=..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---- 491 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK---- 491 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH----
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH----
Confidence 4443345678888888875321111 111 1 1223 234455555555 778999999999999885211
Q ss_pred HhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC--------C-chhhHHhhHHHHHH
Q 012499 372 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP--------Q-NRVLLLAYENAFAE 425 (462)
Q Consensus 372 ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p--------~-nr~~ll~~E~~l~~ 425 (462)
......+..+++.+.+ +++.|-..||.+|.++..+- + ++..+.||=..+.+
T Consensus 492 -~~l~~~l~~l~~~L~d--~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~ 551 (960)
T 1wa5_C 492 -AQLIELMPILATFLQT--DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLK 551 (960)
T ss_dssp -HHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHH
T ss_pred -HHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHH
Confidence 1233455666666654 35778889999999998752 3 56777776555544
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=33.33 E-value=76 Score=29.55 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhcCccccccccCCcchhhhhcHHHHHHHHHhhhCCCCHHHHHHHHHHHHHhhcCCCCcc-ccCCCch
Q 012499 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITEKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEP-FLLPFVP 333 (462)
Q Consensus 255 ~eLr~~aLdil~nIA~~l~L~~~~~~~~~~i~i~~~~ll~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~Ne~-~ll~~~~ 333 (462)
..+++.+++++-.++.... ....+++.|...+.+..--....++..|.++...-.... ..-+.++
T Consensus 117 ~~~~~~a~~~l~~~~~~~~--------------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~ 182 (278)
T 4ffb_C 117 ATTKTQSMSCILSLCGLDT--------------SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP 182 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSS--------------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC--------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH
Confidence 3578888777765542111 012456777888888888888899999998765422111 0112233
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHH
Q 012499 334 QIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVD 367 (462)
Q Consensus 334 ~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~-~~~ 367 (462)
.+...+..+|...|.++|.++.+++..+-.. |..
T Consensus 183 ~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 183 ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 4666678889999999999999998776553 543
No 95
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=30.97 E-value=4.1e+02 Score=26.44 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=11.3
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHh
Q 012499 338 RLVDLMSLPAFDAQAAAVGALYNL 361 (462)
Q Consensus 338 rlv~lL~l~D~~L~~~aLe~LY~L 361 (462)
.+..-+..+++.++..||-+|+.+
T Consensus 108 sl~kDl~~~N~~iR~lALRtL~~I 131 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPAVRALCQI 131 (355)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCcHhHHHHHHHHHhcC
Confidence 334444444445555555555444
No 96
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.73 E-value=96 Score=25.23 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=41.4
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHHhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q 012499 333 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP 410 (462)
Q Consensus 333 ~~i~~rlv~lL~l~D~~L~~~aLe~LY~Ls~~~~~~~~~ia~~~~~V~~LV~ll~~~h~~~em~rrAA~~L~~la~~p 410 (462)
|.|-++|.++|+..|..++++++++|-. . ...+.++.+|-.||... ....|.+-=..|...-..|
T Consensus 20 pWI~kkv~e~LG~eD~~lVd~i~~~l~~--~---------~dpk~l~~~L~~fLd~~--a~~Fv~eLW~lL~~aq~s~ 84 (92)
T 1x4q_A 20 PWIEKTVKRVLGFSEPTVVTAALNCVGK--G---------MDKKKAADHLKPFLDDS--TLRFVDKLFEAVEEGRSSR 84 (92)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHT--T---------CCHHHHHHHHTTTTGGG--THHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHc--C---------CCHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHhCC
Confidence 4478899999999999999999988872 1 12334566776676543 3434444444444443333
No 97
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=30.01 E-value=71 Score=32.23 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=57.0
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHhhcCCC--C-ccccCCCchH--------HHHHHHHhcCC-cHHHHHHHHHHHHHH
Q 012499 293 VEAIMGILGSPFKAWHCAAAELLGRLIINPD--N-EPFLLPFVPQ--------IHKRLVDLMSL-PAFDAQAAAVGALYN 360 (462)
Q Consensus 293 l~~l~~~L~S~Dr~~ii~aLE~L~kL~~~~~--N-e~~ll~~~~~--------i~~rlv~lL~l-~D~~L~~~aLe~LY~ 360 (462)
+.+|..+|.|........++|+|+-+|.-+. | -..++..+.. -|+.+|+.|.- .+.+++.+|+-++=.
T Consensus 164 i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~ 243 (383)
T 3eg5_B 164 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 243 (383)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 5778888999999999999999999999875 4 4555554443 36778888865 577899999988888
Q ss_pred hhccC
Q 012499 361 LAEVN 365 (462)
Q Consensus 361 Ls~~~ 365 (462)
+....
T Consensus 244 li~~~ 248 (383)
T 3eg5_B 244 LITPA 248 (383)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 87763
No 98
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=20.52 E-value=78 Score=20.05 Aligned_cols=17 Identities=41% Similarity=0.726 Sum_probs=12.0
Q ss_pred CCCcCCCCCCCCCCCCC
Q 012499 19 PAAKRGRPFGSTSGSSG 35 (462)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ 35 (462)
|-..||||=||-+-+.+
T Consensus 4 pKrpRgRpkGSKNk~~~ 20 (26)
T 2ezd_A 4 PKRPRGRPKGSKNKGAA 20 (26)
T ss_dssp CCCCSSCCTTCCCCSCC
T ss_pred CcCCCCCcCcccccCcc
Confidence 34448999999876544
No 99
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=25.67 E-value=22 Score=25.44 Aligned_cols=8 Identities=63% Similarity=1.211 Sum_probs=3.0
Q ss_pred ccCCCCCC
Q 012499 7 GKSGGAAG 14 (462)
Q Consensus 7 ~~~~~~~~ 14 (462)
+.+||++|
T Consensus 26 ggsgggsg 33 (52)
T 2lqh_B 26 GGSGGGSG 33 (52)
Confidence 33333333
Done!