Query 012501
Match_columns 462
No_of_seqs 177 out of 1360
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 16.5 2.1E+02 0.0072 27.2 6.3 14 427-440 208-221 (438)
2 2gfp_A EMRD, multidrug resista 14.8 5.4E+02 0.018 23.6 8.7 11 427-437 153-163 (375)
3 1rmk_A MU-O-conotoxin mrvib; b 11.3 53 0.0018 19.6 0.0 18 164-181 12-29 (31)
4 1ufm_A COP9 complex subunit 4; 10.6 2.4E+02 0.0081 21.1 3.6 23 6-28 33-55 (84)
5 2da7_A Zinc finger homeobox pr 10.4 1.7E+02 0.0057 21.4 2.5 22 4-25 33-54 (71)
6 1pw4_A Glycerol-3-phosphate tr 10.0 4.7E+02 0.016 24.7 6.7 15 427-441 185-199 (451)
7 2knc_A Integrin alpha-IIB; tra 9.6 3.1E+02 0.011 18.8 3.5 10 448-457 39-48 (54)
8 2jml_A DNA binding domain/tran 9.1 1.7E+02 0.0057 21.3 2.2 21 6-26 8-28 (81)
9 3a03_A T-cell leukemia homeobo 7.9 2E+02 0.007 19.2 2.1 17 6-22 27-43 (56)
10 1wi3_A DNA-binding protein SAT 7.7 2.5E+02 0.0086 20.4 2.5 18 5-22 37-54 (71)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=16.49 E-value=2.1e+02 Score=27.21 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=6.8
Q ss_pred hchhcchHHHHHHH
Q 012501 427 YGSVYYIGTIIPIV 440 (462)
Q Consensus 427 ~~~~yf~~hi~~~~ 440 (462)
|+..++..-++.++
T Consensus 208 w~~~~~~~~~~~~~ 221 (438)
T 3o7q_A 208 VQTPYMIIVAIVLL 221 (438)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666544333333
No 2
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=14.78 E-value=5.4e+02 Score=23.62 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=4.9
Q ss_pred hchhcchHHHH
Q 012501 427 YGSVYYIGTII 437 (462)
Q Consensus 427 ~~~~yf~~hi~ 437 (462)
|+..++..-+.
T Consensus 153 ~~~~~~~~~~~ 163 (375)
T 2gfp_A 153 WRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555443333
No 3
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=11.29 E-value=53 Score=19.55 Aligned_cols=18 Identities=28% Similarity=0.886 Sum_probs=15.3
Q ss_pred HHHhHhhccCcccccCcc
Q 012501 164 EYIGYCLCCGSHFAGPVY 181 (462)
Q Consensus 164 ~y~~Y~~ffp~ll~GP~~ 181 (462)
..++++++-|+++.||.+
T Consensus 12 ~i~G~i~CC~GLIC~~~~ 29 (31)
T 1rmk_A 12 PILGFVYCCPGLICGPFV 29 (31)
T ss_dssp CTTCCCEESTTCCBCSSS
T ss_pred ceEEEEEecCCceEeeEE
Confidence 357889999999999975
No 4
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=10.57 E-value=2.4e+02 Score=21.06 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=19.1
Q ss_pred HHHHHhhhCCChhHHHHHHHHHH
Q 012501 6 MESMAGSIGVSVAVLRFLLCYVA 28 (462)
Q Consensus 6 ~~~~~~~~g~~~d~~~~l~~ll~ 28 (462)
++.+|+.+|+|++++.=.++-++
T Consensus 33 l~~La~ll~ls~~~vE~~ls~mI 55 (84)
T 1ufm_A 33 FEELGALLEIPAAKAEKIASQMI 55 (84)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 57899999999999987776653
No 5
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=10.42 E-value=1.7e+02 Score=21.40 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=17.4
Q ss_pred hHHHHHHhhhCCChhHHHHHHH
Q 012501 4 LEMESMAGSIGVSVAVLRFLLC 25 (462)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~l~~ 25 (462)
..++.||+.+|+|.+.++-=++
T Consensus 33 eei~~LA~~lgL~~~VVrVWFq 54 (71)
T 2da7_A 33 DELLKISIAVGLPQEFVKEWFE 54 (71)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHh
Confidence 3578899999999998875443
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=10.04 E-value=4.7e+02 Score=24.68 Aligned_cols=15 Identities=13% Similarity=0.467 Sum_probs=8.7
Q ss_pred hchhcchHHHHHHHH
Q 012501 427 YGSVYYIGTIIPIVL 441 (462)
Q Consensus 427 ~~~~yf~~hi~~~~~ 441 (462)
|+..++..-+..++.
T Consensus 185 w~~~f~~~~~~~~~~ 199 (451)
T 1pw4_A 185 WHAALYMPAFCAILV 199 (451)
T ss_dssp STTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666655554443
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.59 E-value=3.1e+02 Score=18.82 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=4.4
Q ss_pred cCCCCCCCCc
Q 012501 448 IKPGKPARSK 457 (462)
Q Consensus 448 ~~~~~~~~~~ 457 (462)
+|.++|.+++
T Consensus 39 FkR~~~~~~e 48 (54)
T 2knc_A 39 FKRNRPPLEE 48 (54)
T ss_dssp TTTTCCSCCC
T ss_pred ccCCCCCcch
Confidence 4444443333
No 8
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=9.07 E-value=1.7e+02 Score=21.31 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.1
Q ss_pred HHHHHhhhCCChhHHHHHHHH
Q 012501 6 MESMAGSIGVSVAVLRFLLCY 26 (462)
Q Consensus 6 ~~~~~~~~g~~~d~~~~l~~l 26 (462)
+..+|+.+|++++++++---.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHh
Confidence 567899999999999987543
No 9
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=7.92 E-value=2e+02 Score=19.17 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=14.2
Q ss_pred HHHHHhhhCCChhHHHH
Q 012501 6 MESMAGSIGVSVAVLRF 22 (462)
Q Consensus 6 ~~~~~~~~g~~~d~~~~ 22 (462)
-+.||+.+|+++.+++-
T Consensus 27 r~~LA~~l~l~~~qV~~ 43 (56)
T 3a03_A 27 RAALAKALRMTDAQVKT 43 (56)
T ss_dssp HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhCcCHHHhhH
Confidence 46789999999999864
No 10
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=7.66 E-value=2.5e+02 Score=20.43 Aligned_cols=18 Identities=0% Similarity=0.163 Sum_probs=14.8
Q ss_pred HHHHHHhhhCCChhHHHH
Q 012501 5 EMESMAGSIGVSVAVLRF 22 (462)
Q Consensus 5 ~~~~~~~~~g~~~d~~~~ 22 (462)
..+.||+.+|+|++++.-
T Consensus 37 ~r~~La~~tGL~~~~IqV 54 (71)
T 1wi3_A 37 AIHTLSAQLDLPKHTIIK 54 (71)
T ss_dssp HHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHH
Confidence 467899999999998763
Done!