Query 012501
Match_columns 462
No_of_seqs 177 out of 1360
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 10:40:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012501.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012501hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rmka_ g.3.6.1 (A:) Conotoxin 63.6 0.71 5.1E-05 25.7 0.0 20 162-181 10-29 (31)
2 d1l0oc_ a.4.13.2 (C:) SigmaF { 25.0 23 0.0017 22.9 2.7 19 6-24 34-52 (57)
3 d1k1xa1 a.8.3.2 (A:311-384) 4- 21.9 23 0.0017 24.4 2.2 23 350-372 43-65 (74)
4 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 13.1 49 0.0035 21.2 2.1 18 5-22 29-46 (58)
5 d1p7ia_ a.4.1.1 (A:) Engrailed 12.9 50 0.0037 20.7 2.1 18 5-22 28-45 (53)
6 d1nd9a_ a.6.1.6 (A:) N-termina 12.4 32 0.0024 21.7 0.9 15 6-20 5-19 (49)
7 d1e3oc1 a.4.1.1 (C:104-160) Oc 11.8 67 0.0049 20.5 2.5 19 4-22 26-44 (57)
8 d2craa1 a.4.1.1 (A:7-64) Homeo 11.3 61 0.0044 20.9 2.1 18 5-22 30-47 (58)
9 d1au7a1 a.4.1.1 (A:103-160) Pi 11.0 73 0.0053 20.3 2.5 18 5-22 28-45 (58)
10 d1ufma_ a.4.5.47 (A:) COP9 sig 10.6 1.1E+02 0.008 21.1 3.6 23 6-28 33-55 (84)
No 1
>d1rmka_ g.3.6.1 (A:) Conotoxin {Marble cone (Conus marmoreus), mrVIb [TaxId: 42752]}
Probab=63.58 E-value=0.71 Score=25.68 Aligned_cols=20 Identities=25% Similarity=0.896 Sum_probs=16.9
Q ss_pred hHHHHhHhhccCcccccCcc
Q 012501 162 LIEYIGYCLCCGSHFAGPVY 181 (462)
Q Consensus 162 ll~y~~Y~~ffp~ll~GP~~ 181 (462)
+...++|+++.|+++.||.+
T Consensus 10 ivpi~gfiyccpglicgpfv 29 (31)
T d1rmka_ 10 IVPILGFVYCCPGLICGPFV 29 (31)
T ss_dssp CCCTTCCCEESTTCCBCSSS
T ss_pred EeeeeeeeeeCCCcccccee
Confidence 44567999999999999975
No 2
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.96 E-value=23 Score=22.87 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=16.2
Q ss_pred HHHHHhhhCCChhHHHHHH
Q 012501 6 MESMAGSIGVSVAVLRFLL 24 (462)
Q Consensus 6 ~~~~~~~~g~~~d~~~~l~ 24 (462)
.+.+|+.+|+|+|++..++
T Consensus 34 ~~EiA~~l~~~~e~V~~~l 52 (57)
T d1l0oc_ 34 VTEIADHLGISPEDVVLAQ 52 (57)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4689999999999997654
No 3
>d1k1xa1 a.8.3.2 (A:311-384) 4-alpha-glucanotransferase, domain 2 {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=21.90 E-value=23 Score=24.39 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=17.6
Q ss_pred HHHHhhcccchhHHHHHHHHHHH
Q 012501 350 VSAVWHGLYPGYIIFFVQSALMI 372 (462)
Q Consensus 350 ~salWHG~~pgYy~~F~~~~l~~ 372 (462)
=.+.|||+.-|-|+..+=-+++.
T Consensus 43 Nd~yWHG~FGGlYLphLR~avy~ 65 (74)
T d1k1xa1 43 NDAYWHGVFGGIYLPHLRRTVWE 65 (74)
T ss_dssp GGGGCCSSSCGGGCHHHHHHHHH
T ss_pred CchhhhhcccccchHHHHHHHHH
Confidence 35899999999998877555543
No 4
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.12 E-value=49 Score=21.23 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=15.1
Q ss_pred HHHHHHhhhCCChhHHHH
Q 012501 5 EMESMAGSIGVSVAVLRF 22 (462)
Q Consensus 5 ~~~~~~~~~g~~~d~~~~ 22 (462)
.-+.||+.+|+++.+|..
T Consensus 29 ~r~~LA~~l~l~~~~V~~ 46 (58)
T d1ig7a_ 29 ERAEFSSSLSLTETQVKI 46 (58)
T ss_dssp HHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhCCChhheee
Confidence 457899999999999863
No 5
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=12.87 E-value=50 Score=20.72 Aligned_cols=18 Identities=11% Similarity=0.422 Sum_probs=15.1
Q ss_pred HHHHHHhhhCCChhHHHH
Q 012501 5 EMESMAGSIGVSVAVLRF 22 (462)
Q Consensus 5 ~~~~~~~~~g~~~d~~~~ 22 (462)
--+.||+.+|+++.+++.
T Consensus 28 ~r~~LA~~lgL~~~qV~v 45 (53)
T d1p7ia_ 28 RRQQLSSELGLNEAQIKI 45 (53)
T ss_dssp HHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCChHHhhh
Confidence 356899999999999874
No 6
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=12.43 E-value=32 Score=21.67 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=10.9
Q ss_pred HHHHHhhhCCChhHH
Q 012501 6 MESMAGSIGVSVAVL 20 (462)
Q Consensus 6 ~~~~~~~~g~~~d~~ 20 (462)
++++|+.+|.|+|.+
T Consensus 5 Vk~lA~~v~~~vd~L 19 (49)
T d1nd9a_ 5 IKTLAAERQTSVERL 19 (49)
T ss_dssp TTHHHHHHSSSHHHH
T ss_pred HHHHHHHHCcCHHHH
Confidence 356788888887764
No 7
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.84 E-value=67 Score=20.48 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.7
Q ss_pred hHHHHHHhhhCCChhHHHH
Q 012501 4 LEMESMAGSIGVSVAVLRF 22 (462)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (462)
...+.||+.+|++++++..
T Consensus 26 ~~~~~LA~~lgL~~~qV~~ 44 (57)
T d1e3oc1 26 EDITLIAEQLNMEKEVIRV 44 (57)
T ss_dssp HHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHH
Confidence 3567899999999999864
No 8
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.33 E-value=61 Score=20.85 Aligned_cols=18 Identities=6% Similarity=0.161 Sum_probs=15.1
Q ss_pred HHHHHHhhhCCChhHHHH
Q 012501 5 EMESMAGSIGVSVAVLRF 22 (462)
Q Consensus 5 ~~~~~~~~~g~~~d~~~~ 22 (462)
.-+.||+.+|+++.+|..
T Consensus 30 ~r~~LA~~l~l~~~qV~v 47 (58)
T d2craa1 30 KRRKISAATSLSERQITI 47 (58)
T ss_dssp HHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHeee
Confidence 457899999999999874
No 9
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.05 E-value=73 Score=20.33 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.2
Q ss_pred HHHHHHhhhCCChhHHHH
Q 012501 5 EMESMAGSIGVSVAVLRF 22 (462)
Q Consensus 5 ~~~~~~~~~g~~~d~~~~ 22 (462)
..+.||+.+|+++++++.
T Consensus 28 ~~~~La~~l~l~~~~V~~ 45 (58)
T d1au7a1 28 EIMRMAEELNLEKEVVRV 45 (58)
T ss_dssp HHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHH
Confidence 467899999999999864
No 10
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.62 E-value=1.1e+02 Score=21.07 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=19.7
Q ss_pred HHHHHhhhCCChhHHHHHHHHHH
Q 012501 6 MESMAGSIGVSVAVLRFLLCYVA 28 (462)
Q Consensus 6 ~~~~~~~~g~~~d~~~~l~~ll~ 28 (462)
++.+|+.+++|++++.-.++-++
T Consensus 33 l~~la~~l~l~~~evE~~l~~mI 55 (84)
T d1ufma_ 33 FEELGALLEIPAAKAEKIASQMI 55 (84)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 67899999999999988877664
Done!