BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012502
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 84/116 (72%), Gaps = 4/116 (3%)
Query: 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
+++ +L LL +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S L
Sbjct: 13 RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNL 72
Query: 74 DTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR----VGIENFIRAKYEEKRWIPR 125
D W EQ+ +Q MGN K+N +EA LP + R +E FIR KYE+K+++ R
Sbjct: 73 DQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDR 128
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 81/111 (72%), Gaps = 4/111 (3%)
Query: 8 SKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISK 67
+++LN +H+ IL LL+ +N+ CADC+AKGPRWAS N+G+FIC++C+GIHR+LGVHIS+
Sbjct: 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISR 68
Query: 68 VRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR----VGIENFIR 114
V+S LD W EQ+ +Q MGN K+ +EA LP N+ R +E FIR
Sbjct: 69 VKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIR 119
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 8/106 (7%)
Query: 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V ++ +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 88 GNEKSNSYWEAEL--------PPNYDRVGIENFIRAKYEEKRWIPR 125
GN N +EA + P+ R E +I AKY EK+++ +
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 8/106 (7%)
Query: 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V ++ +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 88 GNEKSNSYWEAEL--------PPNYDRVGIENFIRAKYEEKRWIPR 125
GN N +EA + P+ R E +I AKY EK+++ +
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 8/106 (7%)
Query: 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V ++ +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 88 GNEKSNSYWEAELP--------PNYDRVGIENFIRAKYEEKRWIPR 125
GN N +EA + P+ R E +I AKY EK+++ +
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 9/127 (7%)
Query: 4 KANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGV 63
+ N+ + + R +L+ LL+ P N CADC A P WAS LG+FIC+ CSGIHR++
Sbjct: 11 RENLYFQGKERRRAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-P 68
Query: 64 HISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR-------VGIENFIRAK 116
+SKV+S LD W QV + S GN+ + + +E+++P Y R + E +IRAK
Sbjct: 69 QVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAK 128
Query: 117 YEEKRWI 123
YE + +I
Sbjct: 129 YERQEFI 135
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
+ R +L+ LL+ P N CADC A P WAS LG+FIC+ CSGIHR++ +SKV+S L
Sbjct: 23 RRRAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRL 80
Query: 74 DTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR-------VGIENFIRAKYEEKRWI 123
D W QV + S GN+ + + +E+++P Y R + E +IRAKYE + +I
Sbjct: 81 DAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFI 137
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQ 85
P N +C DC A P W S NLG+ C+QCSG+HR LGV S+++S TLD P ++ +
Sbjct: 40 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99
Query: 86 SMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRGGNTKSPSRV 135
+MGN N EA+LP + D ++I AKY E R+ R T P R+
Sbjct: 100 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR--CTPEPQRL 155
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 16 RKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75
++I+ + ++ N C DC A P W S NLGI C++CSGIHR LGVH S+++S TLD
Sbjct: 5 KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 64
Query: 76 WLPEQVAVIQSMGNEKSNSYWEAELP--------PNYDRVGIENFIRAKYEEKRW 122
++ + +++GN N E LP P D + +++I AKY E+R+
Sbjct: 65 LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRY 119
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQ 85
P N +C DC A P W S NLG+ C+QCSG+HR LGV S+++S TLD P ++ +
Sbjct: 21 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 80
Query: 86 SMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRGGNTKSPSRV 135
+MGN N EA+LP + D ++I AKY E R+ R T P R+
Sbjct: 81 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR--CTPEPQRL 136
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 65/112 (58%), Gaps = 10/112 (8%)
Query: 11 LNAKHRKILDGLLKLPE-NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVR 69
+NA + ++ L K E N +C DC P W SVN GIF+C+ CSG+HRSLGVHIS VR
Sbjct: 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVR 63
Query: 70 SATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFI-RAKYEEK 120
S +D + EQ+ I GN+K +Y E NY GI +FI KY K
Sbjct: 64 SIKMDIFTDEQLKYIDKGGNKKCQTYLE-----NY---GISDFIPERKYRTK 107
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 82.0 bits (201), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 1 MNEKANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
++EK VS +L +I+ PENR C DC+++ P W S++ +FIC+ CS HR
Sbjct: 12 VDEKGFVSDKLRDNFFQIVR---NRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRK 68
Query: 61 LGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY 104
+GVHIS VRS+ LD + P Q+ + GN ++ +Y++ L N+
Sbjct: 69 MGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNF 112
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
+ RK+L + EN C +C A P+W SV GI+IC++CSG HR LGVH+S VRS T+
Sbjct: 23 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTM 82
Query: 74 DTWLPEQVAVIQSMGNEKSNSYWEAELPPNYD 105
D W ++ +++ GN K + E++ +YD
Sbjct: 83 DKWKDIELEKMKAGGNAKFREFLESQ--EDYD 112
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 22 LLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQ 80
L +P N+ C DC AK P WAS+ G+F+C+ CSG+HRSLGVH+S +RS LD+ W Q
Sbjct: 31 LRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQ 90
Query: 81 VAVIQSMGNEKSNSYW 96
+ +Q GN + +++
Sbjct: 91 LRCMQVGGNANATAFF 106
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
+ RK+L + EN C +C A P+W SV GI+IC++CSG HR LGVH+S VRS T+
Sbjct: 24 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTM 83
Query: 74 DTWLPEQVAVIQSMGNEKSNSYWEAELPPNYD 105
D W ++ +++ GN K + E++ +YD
Sbjct: 84 DKWKDIELEKMKAGGNAKFREFLESQ--EDYD 113
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 79.7 bits (195), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 18 ILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-W 76
I L +P N+ C DC AK P WAS+ G+F+C+ CSG HRSLGVH+S +RS LD+ W
Sbjct: 19 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNW 78
Query: 77 LPEQVAVIQSMGNEKSNSYW 96
Q+ +Q GN ++S++
Sbjct: 79 SWFQLRCMQVGGNASASSFF 98
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 5 ANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVH 64
++ ++ KH K+L + LP NR+C DC +GP + ++ +G F+C CSG R L
Sbjct: 2 SSAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP- 60
Query: 65 ISKVRSATLDTWLPEQVAVIQSMGNEKSNSYW-------EAELPPNYDRVGIENFIRAKY 117
+V+S ++ T+ +++ +Q GNE W + +P D ++ F++ KY
Sbjct: 61 PHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKY 120
Query: 118 EEKRW 122
E+KRW
Sbjct: 121 EKKRW 125
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 17 KILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 76
K+L + LP NR+C DC +GP + ++ +G F+C CSG R L +V+S ++ T+
Sbjct: 9 KMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTF 67
Query: 77 LPEQVAVIQSMGNEKSNSYW-------EAELPPNYDRVGIENFIRAKYEEKRW 122
+++ +Q GNE W + +P D ++ F++ KYE+KRW
Sbjct: 68 TQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 120
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 101 PPNYDRVGIENFIRAKYEEKRWIPRGGNTKSPSRVSEEKASFH 143
PP++ RVG E ++ YE W+ RG P + ++ +
Sbjct: 881 PPDFPRVGYEFWLGDSYESFEWLGRGPGESYPDKKESQRFGLY 923
>pdb|1G8J|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8J|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 24/117 (20%)
Query: 310 QTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLF---GKSEMVSPF-SID---QQQSF 362
+ R R+ + FM P + + + + N + +++ GK+EM + F D ++ +F
Sbjct: 544 ERRIRLSEKFMDPPGTAMADCLIAAR-IANALRDMYQKDGKAEMAAQFEGFDWKTEEDAF 602
Query: 363 L---------AAASVNSNGGSQSFPIN---VHQPGSNGIHVPIQSW----GVVGHQV 403
A +++S GGS + + + G+NG+ +P+ SW G+VG ++
Sbjct: 603 NDGFRRAGQPGAPAIDSQGGSTGHLVTYDRLRKSGNNGVQLPVVSWDESKGLVGTEM 659
>pdb|1G8K|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|E Chain E, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|G Chain G, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 24/117 (20%)
Query: 310 QTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLF---GKSEMVSPF-SID---QQQSF 362
+ R R+ + FM P + + + + N + +++ GK+EM + F D ++ +F
Sbjct: 544 ERRIRLSEKFMDPPGTAMADCLIAAR-IANALRDMYQKDGKAEMAAQFEGFDWKTEEDAF 602
Query: 363 L---------AAASVNSNGGSQSFPIN---VHQPGSNGIHVPIQSW----GVVGHQV 403
A +++S GGS + + + G+NG+ +P+ SW G+VG ++
Sbjct: 603 NDGFRRAGQPGAPAIDSQGGSTGHLVTYDRLRKSGNNGVQLPVVSWDESKGLVGTEM 659
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 247 EASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATE 306
+ S Q +D AT L L+ EN + ++ SC N+ S A+T+ I +S
Sbjct: 181 QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGIRASF--- 237
Query: 307 SKVQTRYRIE-DLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAA 365
+ Y ++ DL ++ +V +++ V D + + M +P ++A
Sbjct: 238 ----SNYGVDVDLAAPGQDILSTVDSGTRRPVS-DAYSFMAGTSMATPHVSGVAALVISA 292
Query: 366 A-SVNSN 371
A SVN N
Sbjct: 293 ANSVNKN 299
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 247 EASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATE 306
+ S Q +D AT L L+ EN + ++ SC N+ S A+T+ I +S
Sbjct: 181 QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGIRASF--- 237
Query: 307 SKVQTRYRIE-DLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAA 365
+ Y ++ DL ++ +V +++ V D + + M +P ++A
Sbjct: 238 ----SNYGVDVDLAAPGQDILSTVDSGTRRPVS-DAYSFMAGTSMATPHVSGVAALVISA 292
Query: 366 A-SVNSN 371
A SVN N
Sbjct: 293 ANSVNKN 299
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 247 EASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATE 306
+ S Q +D AT L L+ EN + ++ SC N+ S A+T+ I +S
Sbjct: 181 QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGIRASF--- 237
Query: 307 SKVQTRYRIE-DLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAA 365
+ Y ++ DL ++ +V +++ V D + + M +P ++A
Sbjct: 238 ----SNYGVDVDLAAPGQDILSTVDSGTRRPVS-DAYSFMAGTSMATPHVSGVAALVISA 292
Query: 366 A-SVNSN 371
A SVN N
Sbjct: 293 ANSVNKN 299
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 84 IQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWI 123
+ + ++ YWE E+ P Y RV F+ + EKRW+
Sbjct: 56 MTKLATDELFDYWECEVTPPYRRVKY-GFLLQQGHEKRWM 94
>pdb|2KZI|A Chain A, Solution Structure Of The Zher2 Affibody
pdb|2KZJ|A Chain A, Solution Structure Of The Zher2 Affibody (Alternative)
Length = 70
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 81 VAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEE 119
+ V E N+YWE L PN + FIR+ Y++
Sbjct: 11 LQVDNKFNKEMRNAYWEIALLPNLNNQQKRAFIRSLYDD 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,752,162
Number of Sequences: 62578
Number of extensions: 558446
Number of successful extensions: 909
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 34
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)