Query 012502
Match_columns 462
No_of_seqs 183 out of 1193
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 10:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 4.9E-41 1.7E-45 299.2 8.3 123 5-127 4-130 (134)
2 2crr_A Stromal membrane-associ 100.0 1.8E-40 6E-45 297.8 8.5 122 7-128 8-133 (141)
3 2olm_A Nucleoporin-like protei 100.0 3.3E-39 1.1E-43 289.3 11.3 119 8-127 5-130 (140)
4 3lju_X ARF-GAP with dual PH do 100.0 3.3E-35 1.1E-39 296.5 11.1 120 7-127 13-139 (386)
5 3jue_A Arfgap with coiled-coil 100.0 2.6E-35 9E-40 293.6 9.1 119 9-127 26-152 (368)
6 2owa_A Arfgap-like finger doma 100.0 3.1E-34 1.1E-38 256.8 7.8 108 14-121 22-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 4.6E-34 1.6E-38 258.6 5.7 95 10-104 11-106 (149)
8 3dwd_A ADP-ribosylation factor 100.0 4.6E-33 1.6E-37 251.6 10.4 114 11-124 21-145 (147)
9 2p57_A GTPase-activating prote 100.0 1.2E-31 4.1E-36 241.7 8.4 90 13-102 22-112 (144)
10 3sub_A ADP-ribosylation factor 100.0 1.5E-31 5.2E-36 245.0 8.0 111 10-120 3-115 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 1.1E-30 3.9E-35 250.2 11.0 120 6-125 20-147 (301)
12 3lvq_E ARF-GAP with SH3 domain 100.0 6.5E-31 2.2E-35 266.4 7.7 119 8-126 3-129 (497)
13 1dcq_A PYK2-associated protein 100.0 3.5E-30 1.2E-34 243.8 9.3 114 13-126 2-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 1.9E-28 6.4E-33 239.5 8.7 91 11-101 20-110 (329)
15 1u5k_A Hypothetical protein; O 87.7 0.74 2.5E-05 43.0 5.8 77 25-118 147-223 (244)
16 1gnf_A Transcription factor GA 68.9 3.3 0.00011 30.7 2.8 38 26-63 2-40 (46)
17 1tjl_A DNAK suppressor protein 59.3 3.7 0.00013 36.9 1.8 35 25-59 108-143 (151)
18 2vut_I AREA, nitrogen regulato 57.3 6.2 0.00021 28.8 2.4 35 29-63 2-37 (43)
19 3dfx_A Trans-acting T-cell-spe 56.7 5.9 0.0002 31.2 2.3 39 25-63 4-43 (63)
20 4gat_A Nitrogen regulatory pro 54.3 7.1 0.00024 30.9 2.5 38 26-63 7-45 (66)
21 4hc9_A Trans-acting T-cell-spe 51.3 7.1 0.00024 33.7 2.2 36 28-63 5-41 (115)
22 2kgo_A Uncharacterized protein 41.7 7.6 0.00026 33.5 0.9 32 28-59 56-88 (108)
23 1d4u_A Nucleotide excision rep 39.3 7.4 0.00025 33.7 0.4 32 27-58 4-36 (111)
24 2kae_A GATA-type transcription 38.3 9.6 0.00033 30.6 0.9 36 27-63 7-45 (71)
25 1ffk_W Ribosomal protein L37AE 34.4 25 0.00084 28.4 2.7 40 15-56 13-53 (73)
26 3g9m_A Glucocorticoid receptor 31.4 20 0.00069 29.4 1.8 30 27-59 1-30 (90)
27 3dzy_D Peroxisome proliferator 27.0 29 0.001 35.1 2.5 31 26-59 48-78 (419)
28 1zbd_B Rabphilin-3A; G protein 26.6 32 0.0011 30.2 2.4 33 26-58 53-90 (134)
29 2nll_B Protein (thyroid hormon 26.3 28 0.00095 29.4 1.8 28 29-59 2-29 (103)
30 1dl6_A Transcription factor II 24.6 30 0.001 26.3 1.6 29 29-58 12-40 (58)
31 4hc9_A Trans-acting T-cell-spe 24.5 45 0.0015 28.7 2.9 38 26-63 57-95 (115)
32 4glq_A Methyl-accepting chemot 24.3 26 0.00091 30.5 1.4 26 75-100 132-157 (171)
33 2ebl_A COUP transcription fact 23.8 36 0.0012 28.0 2.0 31 26-59 5-35 (89)
34 1hcq_A Protein (estrogen recep 23.3 39 0.0013 27.5 2.1 30 27-59 3-32 (84)
35 2han_B Ecdysone receptor; tran 22.8 34 0.0012 29.5 1.8 30 27-59 7-36 (119)
36 1dsz_A RAR-alpha, retinoic aci 22.0 39 0.0013 27.5 1.9 28 29-59 5-32 (86)
37 1r4i_A Androgen receptor; AR, 21.3 29 0.00099 29.4 1.0 32 25-59 4-35 (105)
38 3j21_d 50S ribosomal protein L 21.2 46 0.0016 27.8 2.2 27 29-56 34-77 (89)
39 1kb2_A Vitamin D3 receptor; VD 21.2 37 0.0013 28.9 1.7 29 28-59 6-34 (110)
40 1ynw_B Retinoic acid receptor 20.2 36 0.0012 28.5 1.4 29 28-59 3-31 (99)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.9e-41 Score=299.16 Aligned_cols=123 Identities=47% Similarity=0.880 Sum_probs=107.8
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHH
Q 012502 5 ANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVI 84 (462)
Q Consensus 5 a~~SKrl~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~L 84 (462)
++.|++.+++++++|+.|++.|+|+.|+|||+++|+|+|++||||||+.|+||||+||+|||+||||+||+|++++|++|
T Consensus 4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m 83 (134)
T 2iqj_A 4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM 83 (134)
T ss_dssp ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchhHHHHHhhcCCCCC----ChhHHHHHHHHHhhcCccccCCC
Q 012502 85 QSMGNEKSNSYWEAELPPNY----DRVGIENFIRAKYEEKRWIPRGG 127 (462)
Q Consensus 85 q~gGN~~aN~iwEa~lPp~~----D~~~~e~FIraKY~eKrF~~~~~ 127 (462)
+.+||.++|.+||+++|+.. ....+|+|||+||++++|+.+..
T Consensus 84 ~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 130 (134)
T 2iqj_A 84 QEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL 130 (134)
T ss_dssp HTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred HHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence 99999999999999998653 23468999999999999997653
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=297.81 Aligned_cols=122 Identities=50% Similarity=0.965 Sum_probs=113.3
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHh
Q 012502 7 VSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQS 86 (462)
Q Consensus 7 ~SKrl~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~ 86 (462)
..++++++++++|+.|++.|+|+.|||||+++|+|||++||||||+.|+||||+||+|||+||||+||+|++++|++|+.
T Consensus 8 ~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~ 87 (141)
T 2crr_A 8 KAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQD 87 (141)
T ss_dssp CTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHhhcCCCCC----ChhHHHHHHHHHhhcCccccCCCC
Q 012502 87 MGNEKSNSYWEAELPPNY----DRVGIENFIRAKYEEKRWIPRGGN 128 (462)
Q Consensus 87 gGN~~aN~iwEa~lPp~~----D~~~~e~FIraKY~eKrF~~~~~~ 128 (462)
+||.++|++||+++|+.. ....+|+|||+||++++|+.+...
T Consensus 88 ~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~~ 133 (141)
T 2crr_A 88 MGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAI 133 (141)
T ss_dssp THHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGGG
T ss_pred HccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCcc
Confidence 999999999999998654 234689999999999999976543
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=3.3e-39 Score=289.30 Aligned_cols=119 Identities=31% Similarity=0.671 Sum_probs=109.3
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhh
Q 012502 8 SKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87 (462)
Q Consensus 8 SKrl~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~g 87 (462)
+++++++++++|++|++.|+|+.|+|||+++|+|+|++||||||+.|+||||+||+| |+||||+||+|++++|++|+.+
T Consensus 5 ~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~ 83 (140)
T 2olm_A 5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKH 83 (140)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHh
Confidence 457777999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred cchhHHHHHhhcCCC-------CCChhHHHHHHHHHhhcCccccCCC
Q 012502 88 GNEKSNSYWEAELPP-------NYDRVGIENFIRAKYEEKRWIPRGG 127 (462)
Q Consensus 88 GN~~aN~iwEa~lPp-------~~D~~~~e~FIraKY~eKrF~~~~~ 127 (462)
||.++|.+||+++++ ..|...+++||++||++++|+.+..
T Consensus 84 GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~~ 130 (140)
T 2olm_A 84 GNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPE 130 (140)
T ss_dssp HHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred ccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence 999999999998753 2345678899999999999997543
No 4
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=3.3e-35 Score=296.49 Aligned_cols=120 Identities=41% Similarity=0.743 Sum_probs=112.0
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHh
Q 012502 7 VSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQS 86 (462)
Q Consensus 7 ~SKrl~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~ 86 (462)
-++|++++++++|++|++.|+|+.|||||+++|+|||++||||||+.||||||+| +|||+||||+||.|++++|++|+.
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~ 91 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS 91 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hcchhHHHHHhhcCCCCC------C-hhHHHHHHHHHhhcCccccCCC
Q 012502 87 MGNEKSNSYWEAELPPNY------D-RVGIENFIRAKYEEKRWIPRGG 127 (462)
Q Consensus 87 gGN~~aN~iwEa~lPp~~------D-~~~~e~FIraKY~eKrF~~~~~ 127 (462)
+||.++|.+||+++|+.. | ...+++|||+||++++|+..+.
T Consensus 92 ~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 92 HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp SSHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred hcchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999987532 2 3457899999999999997665
No 5
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=2.6e-35 Score=293.56 Aligned_cols=119 Identities=41% Similarity=0.743 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhc
Q 012502 9 KELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMG 88 (462)
Q Consensus 9 Krl~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~gG 88 (462)
.+.+++++++|+.|++.|+|+.|+|||+++|+|||++||||||++|+||||+||+|||+||||+||.|++++|++|+.+|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~g 105 (368)
T 3jue_A 26 GREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELG 105 (368)
T ss_dssp ------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSC
T ss_pred hhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHc
Confidence 34556699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhcCCCC--------CChhHHHHHHHHHhhcCccccCCC
Q 012502 89 NEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRGG 127 (462)
Q Consensus 89 N~~aN~iwEa~lPp~--------~D~~~~e~FIraKY~eKrF~~~~~ 127 (462)
|.++|+|||+.+|+. .+...+++||++||++|+|+....
T Consensus 106 n~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 106 NVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred cHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 999999999997642 234578999999999999997654
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.1e-34 Score=256.78 Aligned_cols=108 Identities=31% Similarity=0.616 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhcchhHH
Q 012502 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSN 93 (462)
Q Consensus 14 r~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~gGN~~aN 93 (462)
..+++|+.|++.|+|+.|+|||+++|+|+|++||||||+.|+|+||+||+|||+||||+||+|++++|++|+.+||.++|
T Consensus 22 ~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an 101 (138)
T 2owa_A 22 LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRAR 101 (138)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC--CCC-ChhHHHHHHHHHhhcCc
Q 012502 94 SYWEAELP--PNY-DRVGIENFIRAKYEEKR 121 (462)
Q Consensus 94 ~iwEa~lP--p~~-D~~~~e~FIraKY~eKr 121 (462)
+|||++.. +.. .+.+.+.|+.++|+++.
T Consensus 102 ~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 102 NYFKQVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 99998433 222 24677899999999873
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=258.58 Aligned_cols=95 Identities=39% Similarity=0.728 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCC-CCHHHHHHHHhhc
Q 012502 10 ELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMG 88 (462)
Q Consensus 10 rl~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDt-WT~eEV~~Lq~gG 88 (462)
+..++.+++|+.|++.|+|+.|+|||+++|+|+|++||||||+.|+||||.||+|||+||||+||+ |++++|++|+.+|
T Consensus 11 ~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~G 90 (149)
T 2crw_A 11 PSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGG 90 (149)
T ss_dssp CCHHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred chhHHHHHhhcCCCCC
Q 012502 89 NEKSNSYWEAELPPNY 104 (462)
Q Consensus 89 N~~aN~iwEa~lPp~~ 104 (462)
|.++|+|||++..+..
T Consensus 91 N~~an~~~e~~~~~~~ 106 (149)
T 2crw_A 91 NASASSFFHQHGCSTN 106 (149)
T ss_dssp HHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHhcCCCCc
Confidence 9999999999987643
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.98 E-value=4.6e-33 Score=251.58 Aligned_cols=114 Identities=35% Similarity=0.659 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhcch
Q 012502 11 LNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNE 90 (462)
Q Consensus 11 l~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~gGN~ 90 (462)
.+++++++|+.|++.|+|+.|+|||+++|+|+|++||||||++|+||||+||+|||+||||+||+|++++|++|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcC--CCCCCh---------hHHHHHHHHHhhcCcccc
Q 012502 91 KSNSYWEAEL--PPNYDR---------VGIENFIRAKYEEKRWIP 124 (462)
Q Consensus 91 ~aN~iwEa~l--Pp~~D~---------~~~e~FIraKY~eKrF~~ 124 (462)
++|+|||++. .+..+. ...++-|+++++.|.|..
T Consensus 101 ~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 101 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 9999999874 222221 124677888888887754
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=241.68 Aligned_cols=90 Identities=39% Similarity=0.809 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCC-CCHHHHHHHHhhcchh
Q 012502 13 AKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMGNEK 91 (462)
Q Consensus 13 ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDt-WT~eEV~~Lq~gGN~~ 91 (462)
++.+++|+.|++.|+|+.|+|||+++|+|+|++||||||+.|+||||+||+|||+||||+||+ |++++|++|+.+||.+
T Consensus 22 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~ 101 (144)
T 2p57_A 22 TEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNAN 101 (144)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHH
Confidence 456789999999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred HHHHHhhcCCC
Q 012502 92 SNSYWEAELPP 102 (462)
Q Consensus 92 aN~iwEa~lPp 102 (462)
+|+||+++...
T Consensus 102 an~~~e~~g~~ 112 (144)
T 2p57_A 102 ATAFFRQHGCT 112 (144)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999988543
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.97 E-value=1.5e-31 Score=245.02 Aligned_cols=111 Identities=38% Similarity=0.647 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhcC-CCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhc
Q 012502 10 ELNAKHRKILDGLLKL-PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMG 88 (462)
Q Consensus 10 rl~ar~ekiL~~Llk~-PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~gG 88 (462)
-+++..+++|+.|++. |+|+.|+|||+++|+|||++||||||+.|+|+||+||+|||+||||+||.|++++|++|+.+|
T Consensus 3 ~m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~G 82 (163)
T 3sub_A 3 HMNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGG 82 (163)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhC
Confidence 3678899999999985 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhcCCCCCChh-HHHHHHHHHhhcC
Q 012502 89 NEKSNSYWEAELPPNYDRV-GIENFIRAKYEEK 120 (462)
Q Consensus 89 N~~aN~iwEa~lPp~~D~~-~~e~FIraKY~eK 120 (462)
|.++|.||+.+........ ....-..++|+++
T Consensus 83 N~~an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~ 115 (163)
T 3sub_A 83 NKKCQTYLENYGISDFIPERKYRTKAADHYRKI 115 (163)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccChhhcCCCHHHHHHHHH
Confidence 9999999999876554432 1222334445544
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=250.15 Aligned_cols=120 Identities=38% Similarity=0.667 Sum_probs=105.7
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHH
Q 012502 6 NVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQ 85 (462)
Q Consensus 6 ~~SKrl~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq 85 (462)
..+...+++.+++|+.|++.|+|+.|+|||+++|+|+|++||+|+|++|+|+||.||+|||+|||++||.|+.++|.+|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~ 99 (301)
T 2b0o_E 20 GHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99 (301)
T ss_dssp -------CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHH
Confidence 45566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHhhcCCCC--------CChhHHHHHHHHHhhcCccccC
Q 012502 86 SMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPR 125 (462)
Q Consensus 86 ~gGN~~aN~iwEa~lPp~--------~D~~~~e~FIraKY~eKrF~~~ 125 (462)
.+||..+|.+||+.+|.. .+...+++||++||++++|...
T Consensus 100 ~~GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 100 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HCCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HcCCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999987642 2456789999999999998754
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=6.5e-31 Score=266.38 Aligned_cols=119 Identities=38% Similarity=0.671 Sum_probs=107.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhh
Q 012502 8 SKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87 (462)
Q Consensus 8 SKrl~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~g 87 (462)
+..+++.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++|||+||+||+|||||||++||.|+.+++++|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~ 82 (497)
T 3lvq_E 3 DGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 82 (497)
T ss_dssp -----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTC
T ss_pred cchhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHhhcCCCC--------CChhHHHHHHHHHhhcCccccCC
Q 012502 88 GNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRG 126 (462)
Q Consensus 88 GN~~aN~iwEa~lPp~--------~D~~~~e~FIraKY~eKrF~~~~ 126 (462)
||..+|.+||+.+|.. .+...+++||++||++++|..+.
T Consensus 83 GN~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 83 GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp CHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hhHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 9999999999988632 23457899999999999998754
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.96 E-value=3.5e-30 Score=243.83 Aligned_cols=114 Identities=37% Similarity=0.712 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhcchhH
Q 012502 13 AKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKS 92 (462)
Q Consensus 13 ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~gGN~~a 92 (462)
++++++|+.|++.|+|+.|+|||+.+|.|+|++||+|||++|||+||.||+|||+|||++||.|+.+++.+|..+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------CChhHHHHHHHHHhhcCccccCC
Q 012502 93 NSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRG 126 (462)
Q Consensus 93 N~iwEa~lPp~--------~D~~~~e~FIraKY~eKrF~~~~ 126 (462)
|+|||+.+|.. .+...+++||++||..++|..+.
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 99999987532 24567899999999999987654
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-28 Score=239.53 Aligned_cols=91 Identities=40% Similarity=0.754 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhcch
Q 012502 11 LNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNE 90 (462)
Q Consensus 11 l~ar~ekiL~~Llk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~gGN~ 90 (462)
.+++++++|+.|++.|+|+.|||||+++|.|||++||||||+.|+|+||+||+|||+||||+||+|++++|++|+.+||.
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~ 99 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCC
Q 012502 91 KSNSYWEAELP 101 (462)
Q Consensus 91 ~aN~iwEa~lP 101 (462)
++|++||+...
T Consensus 100 ~~n~~~e~~~~ 110 (329)
T 3o47_A 100 KFREFLESQED 110 (329)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHHhcCC
Confidence 99999998753
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=87.71 E-value=0.74 Score=42.99 Aligned_cols=77 Identities=18% Similarity=0.430 Sum_probs=48.8
Q ss_pred CCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhcchhHHHHHhhcCCCCC
Q 012502 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY 104 (462)
Q Consensus 25 ~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHRsLG~hISkVKSLsMDtWT~eEV~~Lq~gGN~~aN~iwEa~lPp~~ 104 (462)
.|.=..|+.||.+...|.+...|.++|..|...+ .++.+++..|+..-......+..-.+++ .
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~~~~~~~~~~~-~ 209 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTVRASFEQPVPS-A 209 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCHHHHHHSCCCG-G
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCHHHHhhCCCCH-H
Confidence 3666799999998777889999999999995321 3578888888766544433333333322 1
Q ss_pred ChhHHHHHHHHHhh
Q 012502 105 DRVGIENFIRAKYE 118 (462)
Q Consensus 105 D~~~~e~FIraKY~ 118 (462)
.....+++++.=|.
T Consensus 210 ~~~~~~~ll~~~~~ 223 (244)
T 1u5k_A 210 DRPALWRALEKFVT 223 (244)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 23344455554443
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=68.91 E-value=3.3 Score=30.74 Aligned_cols=38 Identities=34% Similarity=0.790 Sum_probs=32.0
Q ss_pred CCCCCCcCCCCC-CCCeeEcccchhcchhhhhhhhcCCC
Q 012502 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (462)
Q Consensus 26 PgNk~CADCGA~-~P~WaSlnfGVFLC~~CSGIHRsLG~ 63 (462)
...+.|.+|++. -|.|=.-..|..||-.|.-.++..|.
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 356799999987 57899888999999999988887664
No 17
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=59.32 E-value=3.7 Score=36.93 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCCCCCCcCCCCCCCC-eeEcccchhcchhhhhhhh
Q 012502 25 LPENRECADCKAKGPR-WASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 25 ~PgNk~CADCGA~~P~-WaSlnfGVFLC~~CSGIHR 59 (462)
...-..|.+||.+=|. -.-.--++-+|+.|...|-
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 4566799999988331 1122336789999998764
No 18
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=57.28 E-value=6.2 Score=28.81 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=29.4
Q ss_pred CCCcCCCCC-CCCeeEcccchhcchhhhhhhhcCCC
Q 012502 29 RECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (462)
Q Consensus 29 k~CADCGA~-~P~WaSlnfGVFLC~~CSGIHRsLG~ 63 (462)
+.|++|+.. -|.|=.-..|-.||-.|.-..|..|.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999987 57899999999999999887776553
No 19
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=56.66 E-value=5.9 Score=31.17 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=32.5
Q ss_pred CCCCCCCcCCCCC-CCCeeEcccchhcchhhhhhhhcCCC
Q 012502 25 LPENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (462)
Q Consensus 25 ~PgNk~CADCGA~-~P~WaSlnfGVFLC~~CSGIHRsLG~ 63 (462)
......|++|+.. -|.|=.-..|-.||-.|.-..+..|.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 3567899999987 57999888999999999888877664
No 20
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=54.34 E-value=7.1 Score=30.89 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=32.0
Q ss_pred CCCCCCcCCCCC-CCCeeEcccchhcchhhhhhhhcCCC
Q 012502 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (462)
Q Consensus 26 PgNk~CADCGA~-~P~WaSlnfGVFLC~~CSGIHRsLG~ 63 (462)
.+...|++|+.. -|.|-.-.-|-.||-.|.-..+..|.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 456899999986 58999988999999999888776664
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=51.33 E-value=7.1 Score=33.70 Aligned_cols=36 Identities=33% Similarity=0.804 Sum_probs=29.5
Q ss_pred CCCCcCCCCC-CCCeeEcccchhcchhhhhhhhcCCC
Q 012502 28 NRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (462)
Q Consensus 28 Nk~CADCGA~-~P~WaSlnfGVFLC~~CSGIHRsLG~ 63 (462)
-+.|++||+. -|.|=.-..|-+||-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 4689999986 58899888999999999887775554
No 22
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=41.66 E-value=7.6 Score=33.52 Aligned_cols=32 Identities=25% Similarity=0.573 Sum_probs=22.2
Q ss_pred CCCCcCCCCCCC-CeeEcccchhcchhhhhhhh
Q 012502 28 NRECADCKAKGP-RWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 28 Nk~CADCGA~~P-~WaSlnfGVFLC~~CSGIHR 59 (462)
-..|.+||.+=| .-.-.--++-+|+.|...+-
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 579999998833 11222346789999998764
No 23
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=39.30 E-value=7.4 Score=33.68 Aligned_cols=32 Identities=13% Similarity=0.364 Sum_probs=24.2
Q ss_pred CCCCCcCCCCCCCC-eeEcccchhcchhhhhhh
Q 012502 27 ENRECADCKAKGPR-WASVNLGIFICMQCSGIH 58 (462)
Q Consensus 27 gNk~CADCGA~~P~-WaSlnfGVFLC~~CSGIH 58 (462)
+.-.|.+||...-. |..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 45679999987433 335699999999998653
No 24
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=38.29 E-value=9.6 Score=30.62 Aligned_cols=36 Identities=22% Similarity=0.581 Sum_probs=28.6
Q ss_pred CCCCCcCCCCC-CCCeeE--cccchhcchhhhhhhhcCCC
Q 012502 27 ENRECADCKAK-GPRWAS--VNLGIFICMQCSGIHRSLGV 63 (462)
Q Consensus 27 gNk~CADCGA~-~P~WaS--lnfGVFLC~~CSGIHRsLG~ 63 (462)
....|.+|+.. -|.|=. -.-| .||-.|.-.++..+.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 45789999987 578987 5777 899999888887664
No 25
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=34.40 E-value=25 Score=28.44 Aligned_cols=40 Identities=23% Similarity=0.437 Sum_probs=31.1
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeEcccchhcchhhhh
Q 012502 15 HRKILDGL-LKLPENRECADCKAKGPRWASVNLGIFICMQCSG 56 (462)
Q Consensus 15 ~ekiL~~L-lk~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSG 56 (462)
-++.+.++ ..+.....|.-||.....+.. .||..|..|.-
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 45556666 667888999999988777765 59999999954
No 26
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=31.43 E-value=20 Score=29.35 Aligned_cols=30 Identities=17% Similarity=0.582 Sum_probs=24.6
Q ss_pred CCCCCcCCCCCCCCeeEcccchhcchhhhhhhh
Q 012502 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 27 gNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHR 59 (462)
|++.|.=||.... ...||++.|..|.+.-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999998765 35899999999999776
No 27
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=26.95 E-value=29 Score=35.15 Aligned_cols=31 Identities=29% Similarity=0.685 Sum_probs=25.1
Q ss_pred CCCCCCcCCCCCCCCeeEcccchhcchhhhhhhh
Q 012502 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 26 PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHR 59 (462)
..+..|.=||.+...+ .||++.|..|.+.-|
T Consensus 48 ~~~~~C~vC~~~~~g~---hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASGF---HYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCSB---CSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCCC---ccCcccchhhhHHHc
Confidence 3467899999887654 899999999999876
No 28
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.60 E-value=32 Score=30.22 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=24.9
Q ss_pred CCCCCCcCCCCCC-----CCeeEcccchhcchhhhhhh
Q 012502 26 PENRECADCKAKG-----PRWASVNLGIFICMQCSGIH 58 (462)
Q Consensus 26 PgNk~CADCGA~~-----P~WaSlnfGVFLC~~CSGIH 58 (462)
.+...|+-|+.+- ..-.+..-...||.+|.+.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 5778999999763 44456777888899997765
No 29
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=26.26 E-value=28 Score=29.37 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=23.5
Q ss_pred CCCcCCCCCCCCeeEcccchhcchhhhhhhh
Q 012502 29 RECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 29 k~CADCGA~~P~WaSlnfGVFLC~~CSGIHR 59 (462)
..|.=||.+.. ...||++.|..|++..|
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 29 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFR 29 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhe
Confidence 56999997765 35899999999999877
No 30
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=24.57 E-value=30 Score=26.25 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=21.3
Q ss_pred CCCcCCCCCCCCeeEcccchhcchhhhhhh
Q 012502 29 RECADCKAKGPRWASVNLGIFICMQCSGIH 58 (462)
Q Consensus 29 k~CADCGA~~P~WaSlnfGVFLC~~CSGIH 58 (462)
..|-+|+.....+ ...-|..+|..|.-+-
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCCCEE
Confidence 4799999866322 4467999999996554
No 31
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=24.54 E-value=45 Score=28.66 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=32.2
Q ss_pred CCCCCCcCCCCC-CCCeeEcccchhcchhhhhhhhcCCC
Q 012502 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (462)
Q Consensus 26 PgNk~CADCGA~-~P~WaSlnfGVFLC~~CSGIHRsLG~ 63 (462)
.....|++|+.. -|.|=.-..|-.||-.|.-..+..+.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 456899999986 58999999999999999888777664
No 32
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=24.33 E-value=26 Score=30.48 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHhhcchhHHHHHhhcC
Q 012502 75 TWLPEQVAVIQSMGNEKSNSYWEAEL 100 (462)
Q Consensus 75 tWT~eEV~~Lq~gGN~~aN~iwEa~l 100 (462)
.|+++|+++|+..++..+-.+-.+.+
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l 157 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHF 157 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999988887776654
No 33
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=23.84 E-value=36 Score=28.00 Aligned_cols=31 Identities=26% Similarity=0.647 Sum_probs=25.8
Q ss_pred CCCCCCcCCCCCCCCeeEcccchhcchhhhhhhh
Q 012502 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 26 PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHR 59 (462)
+.+..|.=||.+.. ...||++.|..|++..|
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFK 35 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhh
Confidence 45678999998765 34899999999999887
No 34
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=23.32 E-value=39 Score=27.47 Aligned_cols=30 Identities=27% Similarity=0.712 Sum_probs=25.3
Q ss_pred CCCCCcCCCCCCCCeeEcccchhcchhhhhhhh
Q 012502 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 27 gNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHR 59 (462)
+...|.=||.+.. ...||++.|..|++..|
T Consensus 3 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (84)
T 1hcq_A 3 ETRYCAVCNDYAS---GYHYGVWSCEGCKAFFK 32 (84)
T ss_dssp CCCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCcEECCCCC---CeeeCccchHHhhhhhh
Confidence 4578999998764 46899999999999887
No 35
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=22.77 E-value=34 Score=29.54 Aligned_cols=30 Identities=20% Similarity=0.613 Sum_probs=25.4
Q ss_pred CCCCCcCCCCCCCCeeEcccchhcchhhhhhhh
Q 012502 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 27 gNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHR 59 (462)
....|.=||.... ...||++.|..|++..|
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 36 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFR 36 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhh
Confidence 4678999998754 56999999999999887
No 36
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=21.95 E-value=39 Score=27.53 Aligned_cols=28 Identities=29% Similarity=0.746 Sum_probs=23.1
Q ss_pred CCCcCCCCCCCCeeEcccchhcchhhhhhhh
Q 012502 29 RECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 29 k~CADCGA~~P~WaSlnfGVFLC~~CSGIHR 59 (462)
..|.=||.+... ..||++.|..|++..|
T Consensus 5 ~~C~VCg~~a~g---~hyGv~sC~aCk~FFR 32 (86)
T 1dsz_A 5 KPCFVCQDKSSG---YHYGVSACEGCKGFFR 32 (86)
T ss_dssp -CCTTTCSCCCS---EETTEECCHHHHHHHH
T ss_pred CCCcEECCCccc---eeeCchhHHHHHHHHH
Confidence 469999987653 4899999999999887
No 37
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=21.30 E-value=29 Score=29.43 Aligned_cols=32 Identities=19% Similarity=0.626 Sum_probs=25.4
Q ss_pred CCCCCCCcCCCCCCCCeeEcccchhcchhhhhhhh
Q 012502 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 25 ~PgNk~CADCGA~~P~WaSlnfGVFLC~~CSGIHR 59 (462)
.+....|.=||.... ...||++.|..|++..|
T Consensus 4 ~~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (105)
T 1r4i_A 4 FPPQKTCLICGDEAS---GAHYGALTCGSCKVFFK 35 (105)
T ss_dssp --CCCBCSSSCSBEE---EEETTEEEEHHHHHHHH
T ss_pred CCCCCCCcEeCCCCC---ceEeCCcchhhhhhhhc
Confidence 355778999997643 56899999999999887
No 38
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.25 E-value=46 Score=27.80 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=19.0
Q ss_pred CCCcCCCCC-------CCC----------eeEcccchhcchhhhh
Q 012502 29 RECADCKAK-------GPR----------WASVNLGIFICMQCSG 56 (462)
Q Consensus 29 k~CADCGA~-------~P~----------WaSlnfGVFLC~~CSG 56 (462)
-.|+|||.+ -|. -++=.|| .+|..|.-
T Consensus 34 pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 34 AHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 369999976 111 3455789 99999954
No 39
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=21.25 E-value=37 Score=28.93 Aligned_cols=29 Identities=24% Similarity=0.676 Sum_probs=24.0
Q ss_pred CCCCcCCCCCCCCeeEcccchhcchhhhhhhh
Q 012502 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 28 Nk~CADCGA~~P~WaSlnfGVFLC~~CSGIHR 59 (462)
...|.=||..... ..||++.|..|.+..|
T Consensus 6 ~~~C~VCg~~a~g---~hyGv~sC~aCk~FFR 34 (110)
T 1kb2_A 6 PRICGVCGDRATG---FHFNAMTCEGCKGFFR 34 (110)
T ss_dssp -CBCTTTCSBCCS---EETTEECCHHHHHHHH
T ss_pred CCCCcEeCCCCCc---eEeCchhHhhhhhhhe
Confidence 4679999987653 4899999999999887
No 40
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=20.22 E-value=36 Score=28.50 Aligned_cols=29 Identities=24% Similarity=0.754 Sum_probs=23.1
Q ss_pred CCCCcCCCCCCCCeeEcccchhcchhhhhhhh
Q 012502 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (462)
Q Consensus 28 Nk~CADCGA~~P~WaSlnfGVFLC~~CSGIHR 59 (462)
...|.=||.+.. ...||++.|..|.+..|
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 31 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFK 31 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHH
Confidence 357999998764 45899999999999887
Done!