Query 012503
Match_columns 462
No_of_seqs 170 out of 231
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:42:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb7_A Telomere-binding protei 100.0 4.4E-82 1.5E-86 663.5 33.3 388 3-460 31-494 (495)
2 1xjv_A Protection of telomeres 100.0 1.4E-59 4.8E-64 466.9 28.2 270 6-300 2-285 (294)
3 1qzg_A Protection of telomeres 100.0 1.3E-32 4.4E-37 251.1 17.0 142 6-148 25-174 (187)
4 4hik_A Protection of telomeres 100.0 1.1E-31 3.6E-36 236.1 15.2 124 155-300 3-135 (143)
5 4gop_C Putative uncharacterize 99.2 2.3E-09 7.8E-14 111.8 25.3 308 10-401 3-372 (444)
6 1jmc_A Protein (replication pr 98.5 5.9E-06 2E-10 78.9 17.9 220 8-299 6-236 (246)
7 2k50_A Replication factor A re 98.4 1.1E-06 3.6E-11 74.3 9.3 93 5-103 2-99 (115)
8 2k75_A Uncharacterized protein 98.2 5.3E-06 1.8E-10 69.2 10.0 88 8-108 1-91 (106)
9 1o7i_A SSB, SSO2364, single st 98.1 4.1E-05 1.4E-09 65.0 12.1 89 10-108 2-94 (119)
10 1jmc_A Protein (replication pr 98.0 2.1E-05 7.1E-10 75.1 10.4 91 6-101 122-218 (246)
11 4gop_C Putative uncharacterize 98.0 2.9E-05 1E-09 80.7 11.9 91 6-99 117-215 (444)
12 2kbn_A Conserved protein; nucl 97.7 0.00042 1.4E-08 57.9 11.4 84 10-103 5-88 (109)
13 3dm3_A Replication factor A; p 97.6 0.00023 8E-09 59.0 8.6 84 9-101 4-92 (105)
14 2k75_A Uncharacterized protein 97.6 0.00093 3.2E-08 55.4 12.2 87 159-293 4-98 (106)
15 2k50_A Replication factor A re 97.5 0.00073 2.5E-08 56.6 10.3 91 159-290 8-107 (115)
16 1o7i_A SSB, SSO2364, single st 97.4 0.0019 6.4E-08 54.6 11.8 88 159-290 3-98 (119)
17 2kbn_A Conserved protein; nucl 97.4 0.0037 1.3E-07 52.0 13.2 89 159-291 6-97 (109)
18 3e0e_A Replication protein A; 97.4 0.00089 3E-08 54.6 9.1 83 11-102 3-89 (97)
19 1wjj_A Hypothetical protein F2 97.4 0.0042 1.4E-07 54.3 13.9 50 238-291 74-123 (145)
20 1wjj_A Hypothetical protein F2 97.2 0.0013 4.3E-08 57.7 8.6 90 5-103 11-114 (145)
21 3dm3_A Replication factor A; p 96.8 0.015 5E-07 48.0 11.8 84 157-286 5-98 (105)
22 3e0e_A Replication protein A; 96.3 0.038 1.3E-06 44.8 10.9 92 159-286 3-94 (97)
23 1ynx_A Replication factor-A pr 95.6 0.083 2.8E-06 44.0 10.2 54 236-290 51-111 (114)
24 1xjv_A Protection of telomeres 95.6 0.13 4.4E-06 50.1 13.1 156 156-385 5-184 (294)
25 1qzg_A Protection of telomeres 94.9 0.24 8.1E-06 44.9 11.2 89 161-285 36-131 (187)
26 1l1o_C Replication protein A 7 93.7 0.46 1.6E-05 42.8 10.7 71 330-400 6-106 (181)
27 3u4z_A Telomerase-associated p 93.6 0.63 2.1E-05 35.8 9.5 84 12-103 3-87 (109)
28 4gop_B Putative uncharacterize 92.4 0.95 3.2E-05 38.6 10.2 69 22-101 37-109 (136)
29 1miu_A BRCA2, breast cancer ty 92.3 1.4 4.6E-05 47.9 13.4 152 44-270 511-670 (738)
30 1ynx_A Replication factor-A pr 92.2 0.046 1.6E-06 45.6 1.6 82 9-96 3-89 (114)
31 3kdf_D Replication protein A 3 91.6 1.5 5E-05 37.2 10.5 70 22-101 32-104 (132)
32 1jb7_A Telomere-binding protei 90.9 1.3 4.4E-05 46.3 11.2 107 156-292 37-153 (495)
33 3ebe_A Protein MCM10 homolog; 90.5 0.25 8.7E-06 45.3 4.8 81 8-90 36-123 (200)
34 3u58_A Tetrahymena TEB1 AB; te 89.6 3.2 0.00011 35.3 10.4 85 11-103 120-205 (213)
35 4hik_A Protection of telomeres 89.0 0.66 2.3E-05 40.2 6.0 77 9-94 4-101 (143)
36 2pi2_A Replication protein A 3 87.8 3.2 0.00011 39.6 10.7 81 11-101 49-144 (270)
37 3u50_C Telomerase-associated p 83.5 0.33 1.1E-05 43.5 1.1 33 369-401 71-103 (172)
38 4gop_B Putative uncharacterize 80.6 17 0.00058 30.6 11.0 81 166-292 35-118 (136)
39 3kdf_D Replication protein A 3 78.0 20 0.00067 30.0 10.5 80 168-292 32-113 (132)
40 2pi2_A Replication protein A 3 74.9 37 0.0013 32.1 12.7 81 168-293 72-154 (270)
41 3kf6_A Protein STN1; OB fold, 59.5 12 0.00043 32.7 5.3 71 22-101 48-121 (159)
42 3r8s_P 50S ribosomal protein L 59.4 18 0.00062 29.8 5.8 41 70-111 14-62 (114)
43 2ftc_K 39S ribosomal protein L 56.3 18 0.0006 29.1 5.2 43 72-115 1-50 (98)
44 3mxn_A RECQ-mediated genome in 53.2 20 0.00069 31.2 5.4 71 324-400 16-87 (157)
45 1miu_A BRCA2, breast cancer ty 52.8 35 0.0012 37.0 8.3 72 11-93 597-672 (738)
46 3kf6_A Protein STN1; OB fold, 49.9 66 0.0023 27.9 8.4 29 167-197 47-75 (159)
47 3f2b_A DNA-directed DNA polyme 49.8 21 0.00074 40.4 6.4 85 9-99 6-94 (1041)
48 3f2b_A DNA-directed DNA polyme 49.2 41 0.0014 38.2 8.5 40 159-198 8-51 (1041)
49 3v2d_T 50S ribosomal protein L 47.8 33 0.0011 29.4 5.8 41 70-111 17-65 (146)
50 2hpi_A DNA polymerase III alph 29.6 42 0.0014 38.7 4.6 76 11-91 1027-1107(1220)
51 2zjr_M 50S ribosomal protein L 26.9 47 0.0016 29.1 3.4 42 70-112 22-71 (166)
52 3afp_A Single-stranded DNA-bin 26.6 65 0.0022 28.2 4.5 73 22-94 5-90 (168)
53 3koj_A Uncharacterized protein 23.3 62 0.0021 26.2 3.4 25 238-262 54-78 (108)
54 2ibg_E Protein hedgehog, GH039 22.9 68 0.0023 27.6 3.7 29 236-264 105-138 (150)
55 3u4z_A Telomerase-associated p 21.1 1.5E+02 0.0052 22.6 4.9 39 160-200 3-43 (109)
No 1
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=100.00 E-value=4.4e-82 Score=663.46 Aligned_cols=388 Identities=20% Similarity=0.275 Sum_probs=333.2
Q ss_pred CCCCCcceeehhhhhhccCCeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCC-----CCe-----EEEEecCCCCCC
Q 012503 3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQS-----PEL-----LVNIFTSSIDQL 72 (462)
Q Consensus 3 ~~~~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~-----~gl-----~v~iF~~~~~~L 72 (462)
+.+.+|+|++|++|....++.|||||||+|+++|++|+|+||+|||+|+|+|+.. .|| +|+||++++++|
T Consensus 31 ~~~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L 110 (495)
T 1jb7_A 31 DKGHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL 110 (495)
T ss_dssp -----CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS
T ss_pred cccCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC
Confidence 4577899999999998889999999999999999999999999999999999982 389 999999999999
Q ss_pred CCCCCCCCEEEEeeEEEEEEcCeeEEEecCCc-eEEEEEeCCC------------CCCCCccccCCCCCCCCHHHHHHHH
Q 012503 73 PRVLSPRDLILLKNVMIKKHQAELSAVFYKDS-SSFALFDGNS------------GSNLLPYQSSPQRFEITEAEERRIN 139 (462)
Q Consensus 73 P~v~~~GDII~l~rvki~~~~g~~~~~~~~~~-ss~~lf~~~~------------~~~~~Py~~s~~~~~~~~~e~~~v~ 139 (462)
|.|.++||||+|||++|+.|+|+++++++..+ |+||||++.. +.++.||+.|+.+|+++++|++++.
T Consensus 111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~ 190 (495)
T 1jb7_A 111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ 190 (495)
T ss_dssp CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHH
T ss_pred CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHH
Confidence 99988999999999999999999999998776 8999999987 6778999998677999999999999
Q ss_pred HHHHhhhcCccc---CCCcccccccc-cccCCceeeeEEEEEEEeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCC
Q 012503 140 VLRQWCVGFEFS---SGSNDYLLSLK-DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPL 215 (462)
Q Consensus 140 ~Lr~W~~~~~~~---~~~~~f~~~L~-di~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~ 215 (462)
.||+|+.++... .++.+| .+|+ ||++++||||+||||+++ ..++++++|||||||++|+++
T Consensus 191 ~LR~W~~~~~~~~~~~~~~~f-~~L~~di~~~~f~DLv~qVv~~~-~~d~~~~~L~VwDgT~~~~~~------------- 255 (495)
T 1jb7_A 191 NLRKWANQYFSSYSVISSDMY-TALNKAQAQKGDFDVVAKILQVH-ELDEYTNELKLKDASGQVFYT------------- 255 (495)
T ss_dssp HHHHHHHHHHHHSCSSCGGGS-CCGGGGGGCSSCEEEEEEEEEEE-ECSSSEEEEEEEETTCCEEEE-------------
T ss_pred HHHHHHHhcccccccccccch-hhhhhhhccCCceeEEEEEeEEe-ccCCCeEEEEEEeCCCCCcce-------------
Confidence 999999987653 255678 8999 999999999999999999 557899999999999998865
Q ss_pred CCcccCCCCChhccccCCCc--ceEEEEEecccchhhh-cccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceE------
Q 012503 216 PLHIESSPLDLETLRNFFPV--GTVLRVSTDRSYENFG-RYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR------ 286 (462)
Q Consensus 216 p~~~~~~~l~~~~~~~~p~~--G~~l~V~~~~~~~~~~-~~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~------ 286 (462)
.+.++++|.+ |.+|+|..++..+..+ .+.++.|+| +||. ++..+++++
T Consensus 256 ----------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~ 312 (495)
T 1jb7_A 256 ----------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAK 312 (495)
T ss_dssp ----------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHH
T ss_pred ----------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhc
Confidence 3457899988 9999999987665543 567889999 5777 556678887
Q ss_pred EcCCCChhHHHHHhhhhcCCCCCCCCcCCCCCCcccccc--cCCCCcccHHHHhhC----CCCCce--EEEEEEEEeecC
Q 012503 287 LFSDNDNVVWDYMRERISGGHGHMPIWTDPSSQFLTEVD--WVNVASVTLMKIATQ----LQGNVR--CCCIVRVVSIHP 358 (462)
Q Consensus 287 ~l~~~d~~v~~~~rer~~~~~~~~~~~~~p~~~~it~~~--~~~~p~ttL~dIL~~----p~v~~k--fr~~VRVV~~~P 358 (462)
+++++ +.++ ++ +|+++.++++.+|+++ |+++|+|||||||++ |++++| |||.||||+|||
T Consensus 313 ~l~~~---~~~~--~~-------~~~~~~~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P 380 (495)
T 1jb7_A 313 IQDDH---SVEV--AS-------LKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEP 380 (495)
T ss_dssp SCCCC---HHHH--HH-------TTSSSCSSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEES
T ss_pred ccchh---hhhh--hh-------cccccCCCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEEecC
Confidence 77665 3332 22 4667767788899988 999999999999987 889898 999999999999
Q ss_pred CcccccccC-----------C-----CceEEEEEEEEeCCC-------ceEEEEEeccccccccCCCCC---------hH
Q 012503 359 FQAEHYSSP-----------N-----GSSEYTMKLTLEDPT-------ARIHALLCGKEWVKFFGGSPP---------PD 406 (462)
Q Consensus 359 ~~~edf~~~-----------~-----~~w~~~f~L~lED~t-------~ri~~~v~~~da~~f~~~~~~---------~~ 406 (462)
+++||||++ . |+++|||+|+|||+| +||+|||+|+||+.||+ +++ +.
T Consensus 381 ~~i~df~~~~~~~~~~~~s~~g~~~~~~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~-l~a~nL~~n~~~~~ 459 (495)
T 1jb7_A 381 SDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFN-VKADNLHKNADARK 459 (495)
T ss_dssp SSGGGGEEEEETTTTEEECSTTCGGGCEEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTS-SCCCCTTTCHHHHH
T ss_pred CCHHHhhhhhccccccccccccccCCCCceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecC-CChHhhhcCHHHHH
Confidence 999999943 2 367999999999999 99999999999999998 643 58
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcCCCcceeEeeeeeeecCCceEEEEEeeeEEc
Q 012503 407 VLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFLHLKESDGGRNRVYYIRWTKLV 460 (462)
Q Consensus 407 ~l~~kl~~L~G~~e~~~~~~~~~~~~p~~~cCi~sY~v~~~~~r~f~~F~T~i~ 460 (462)
.|||||..|.- ..+ ||+|||+. ++..|+||+|+|+
T Consensus 460 ~L~e~~~~l~~-----------~~~--~~d~~~~~------~~~~y~~~~t~~~ 494 (495)
T 1jb7_A 460 KLEDSAELLTK-----------FNS--YVDAVVER------RNGFYLIKDTKLI 494 (495)
T ss_dssp HHHHHHHHHHS-----------TTE--EEEEEEEE------ETTEEEEESEEEC
T ss_pred HHHHHHHHhcc-----------CCc--eEEEEEEe------ecceEEeeeeeec
Confidence 99999998752 122 99999954 2779999999985
No 2
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=100.00 E-value=1.4e-59 Score=466.95 Aligned_cols=270 Identities=23% Similarity=0.348 Sum_probs=235.4
Q ss_pred CCcceeehhhhhhccCCeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 012503 6 NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (462)
Q Consensus 6 ~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (462)
++|+|++|+++. .++.|||||||+|+++|++|+|+||+|||+|+|+|. .||+|+||++++++||.+.++||||+||
T Consensus 2 ~~y~y~~l~~l~--~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~--~gl~v~iF~~~~~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 2 TNYIYTPLNQLK--GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN--VKLTCLLFSGNYEALPIIYKNGDIVRFH 77 (294)
T ss_dssp CCCCCCCGGGCC--SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC--CEEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred CcceEEEHHHhh--CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC--CCEEEEEECCChHHCCCCCCCCCEEEEE
Confidence 579999999884 588899999999999999999999999999999997 4699999999999999998899999999
Q ss_pred eEEEEEEcCeeEEEecCCceEEEEEeCCCCCCCCccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccccccc
Q 012503 86 NVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDIS 165 (462)
Q Consensus 86 rvki~~~~g~~~~~~~~~~ss~~lf~~~~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~~~L~di~ 165 (462)
|++|+.|+|+++++++.++ +|++|+|..+.++.|++.++. |+++++|++++..||+|+.++..... +| ++|+||+
T Consensus 78 ~vki~~~~g~~~~v~~~~~-s~~~f~g~~~~~~~p~~~~~~-~~~~~~e~~~~~~Lr~w~~~~~~~~~--~~-~~L~di~ 152 (294)
T 1xjv_A 78 RLKIQVYKKETQGITSSGF-ASLTFEGTLGAPIIPRTSSKY-FNFTTEDHKMVEALRVWASTHMSPSW--TL-LKLCDVQ 152 (294)
T ss_dssp EEEEEEETTEEEEEEEEEE-EEEEECCSTTCCCCCBCSCSS-CCCCHHHHHHHHHHHHHHHHHCC-----CC-CCGGGCC
T ss_pred EEEEEEECCeEEEEccCCe-EEEEECCCCCCCcCCcccCCC-cCCCHHHHHHHHHHHHHHHhccCCCC--ce-eEHHHcc
Confidence 9999999999999998774 455899998888899776655 99999999999999999988765433 57 8999999
Q ss_pred CCceeeeEEEEEEEeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccccCC-Ccc-eEEEEEe
Q 012503 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFF-PVG-TVLRVST 243 (462)
Q Consensus 166 ~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p-~~G-~~l~V~~ 243 (462)
+++||||+||||+++ ..++++++|||||||+||+++++...++++.+++++. | +.| ++++|++
T Consensus 153 ~~~f~DLv~qVv~v~-~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~--------------~~~~~~lt~~V~~ 217 (294)
T 1xjv_A 153 PMQYFDLTCQLLGKA-EVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSH--------------IHRLQNLTIDILV 217 (294)
T ss_dssp SSCEEEEEEEEEEEE-ECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHH--------------HHHHGGGSEEEEE
T ss_pred cCCeeeEEEEEEEEE-ecCCCeEEEEEECCCCCCCCccccccccccccCcccc--------------cccccCeeEEEEE
Confidence 999999999999999 5578999999999999999997776655444443321 2 246 8999999
Q ss_pred cccchhhhcccCCCCCEEEEEceEEEEe--------CcEEEEEEeeCC----ceEEcCCCChhHHHHHh
Q 012503 244 DRSYENFGRYFTATGKWVRIRNMSCQVS--------SGMWHGLLQSSS----KIRLFSDNDNVVWDYMR 300 (462)
Q Consensus 244 ~~~~~~~~~~~~k~g~wV~l~Nv~~k~~--------~g~leG~l~~~s----ki~~l~~~d~~v~~~~r 300 (462)
|++|+.+++ .+|+||||+|+||++|+. +|.|||.||+++ ||++++++++.+++++|
T Consensus 218 ~d~h~~~~~-~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~ 285 (294)
T 1xjv_A 218 YDNHVHVAR-SLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKK 285 (294)
T ss_dssp ETTHHHHHH-HCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHH
T ss_pred EcchhHHHh-cCCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHH
Confidence 999998765 899999999999999995 789999999985 58999999998886654
No 3
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=100.00 E-value=1.3e-32 Score=251.14 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=123.4
Q ss_pred CCcceeehhhhhh--ccCCeEEEEEEEEecCCcccc-CCC-ceEEEEEEEeCCCC--CCCeEEEEecCCCCCCCCCCCCC
Q 012503 6 NQGGIVRIKELAM--HVKHKVNLLGVVLEFSIPRKS-QGT-DYVCVLKIVDDSQQ--SPELLVNIFTSSIDQLPRVLSPR 79 (462)
Q Consensus 6 ~~y~y~~i~d~~~--~~~~~vnviGVVvd~~~P~~t-rG~-D~~~tl~I~D~s~~--~~gl~v~iF~~~~~~LP~v~~~G 79 (462)
-.++|+++++++. ..++.||+||||+|+++|++| +|+ ||+|||+|+|+|+. +.||+|+||++++++||.|.++|
T Consensus 25 ~~~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~G 104 (187)
T 1qzg_A 25 GELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVG 104 (187)
T ss_dssp TTEEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTT
T ss_pred cceeEEEHHHHHhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCC
Confidence 3578999999987 467889999999999999999 999 99999999999965 56999999999999999999999
Q ss_pred CEEEEeeEEEEEEcCeeEEEecCCceEEEEEeCCCCCCCCcccc--CCCCCCCCHHHHHHHHHHHHhhhcC
Q 012503 80 DLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQS--SPQRFEITEAEERRINVLRQWCVGF 148 (462)
Q Consensus 80 DII~l~rvki~~~~g~~~~~~~~~~ss~~lf~~~~~~~~~Py~~--s~~~~~~~~~e~~~v~~Lr~W~~~~ 148 (462)
|||+|||+|||.|+|++++++++. ++|++|++..+.+..|++. ++.++.++++|++|+..|++||..+
T Consensus 105 DIIlL~rvkiq~~~g~~~~v~~~~-~s~a~f~~~~~~~~~~~~~~~~p~~~~~~~~E~~ya~~L~~~w~~~ 174 (187)
T 1qzg_A 105 QPLLLHQITLRSYRDRTQGLSKDQ-FRYALWPDFSSNSKDTLCPQPMPRLMKTGDKEEQFALLLNKIWDEQ 174 (187)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEE-EEEEECCCTTCSCSCCSCCCCSTTBCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEEECCeEEEEEcCc-eeEEEEeccCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877 4799999876544334333 3334899999999999999877643
No 4
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=99.97 E-value=1.1e-31 Score=236.08 Aligned_cols=124 Identities=17% Similarity=0.270 Sum_probs=107.2
Q ss_pred cccccccccccCCceeeeEEEEEEEeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccccCC-
Q 012503 155 NDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFF- 233 (462)
Q Consensus 155 ~~f~~~L~di~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p- 233 (462)
.|| ++|+||++++||||+||||+++++ + ++++|||||||+||.++ +...+++ ...||
T Consensus 3 ~kf-~llkdv~~~~F~Dl~~qVv~~~~~-~-~~~~LyVTDYT~N~~~~-~~~~~~~------------------~~~W~G 60 (143)
T 4hik_A 3 DSF-SLLSQITPHQRCSFYAQVIKTWYS-D-KNFTLYVTDYTENELFF-PMSPYTS------------------SSRWRG 60 (143)
T ss_dssp -CC-CCGGGCCSSCEEEEEEEEEEEEEC-S-SCEEEEEECSCCCTTSC-CBCTTCT------------------TCSCCC
T ss_pred chh-hhHHhCCCCCeEEEEEEEEEEEcC-C-CeEEEEEecCCCCCccc-ccccCCC------------------CccccC
Confidence 478 999999999999999999999944 4 99999999999999988 3322110 13799
Q ss_pred Ccc-eEEEEEecccchhhhcccCCCCCEEEEEceEEEE-eCcEEEEEEeeCC----c--eEEcCCCChhHHHHHh
Q 012503 234 PVG-TVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV-SSGMWHGLLQSSS----K--IRLFSDNDNVVWDYMR 300 (462)
Q Consensus 234 ~~G-~~l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~-~~g~leG~l~~~s----k--i~~l~~~d~~v~~~~r 300 (462)
|+| ++|||+||++|+.++++++++||||+|+||++|+ .+|.|||+||+++ | |..|+++|+.+++++|
T Consensus 61 p~G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~ 135 (143)
T 4hik_A 61 PFGRFSIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKS 135 (143)
T ss_dssp CCBSCCEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHH
T ss_pred CCCcEEEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHH
Confidence 999 9999999999999999999999999999999999 6789999999998 4 4468888888888875
No 5
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.22 E-value=2.3e-09 Score=111.80 Aligned_cols=308 Identities=12% Similarity=0.105 Sum_probs=189.3
Q ss_pred eeehhhhhhccCCeEEEEEEEEecCCccc---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEEEe
Q 012503 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLILLK 85 (462)
Q Consensus 10 y~~i~d~~~~~~~~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~L-P~v~~~GDII~l~ 85 (462)
+++|+++.... ....+.|-|+.....+. .+|..-..++.|.|++- .|.+.+|.+..+.+ |.+ ..|+++.|.
T Consensus 3 ~~~I~~L~p~~-~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~Is 77 (444)
T 4gop_C 3 IYPIEGLSPYQ-NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG---EIKATGFNDAVDRFYPLL-QENHVYLIS 77 (444)
T ss_dssp CCCSTTCCTTC-CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEETHHHHHHTTTC-CTTCEEEEE
T ss_pred ceeHHHCCCCC-cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC---EEEEEEeHHHHHHHHHhe-ecCCEEEEc
Confidence 67899987433 25899999998766542 24445678999999753 49999998654555 556 799999999
Q ss_pred eEEEEEEcCeeEEE-------ecCCceEEEEEeCCCCCCCCccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCcccc
Q 012503 86 NVMIKKHQAELSAV-------FYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYL 158 (462)
Q Consensus 86 rvki~~~~g~~~~~-------~~~~~ss~~lf~~~~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~ 158 (462)
+.+|+..+++.... ++.. |...... +..-.| ...| .|
T Consensus 78 ~~~V~~~~~~y~~~~~~~ei~~~~~-T~V~~~~---d~~~iP----~~~~---------------------------~f- 121 (444)
T 4gop_C 78 KARVNIAKKQFSNLQNEYEITFENS-TEIEECT---DATDVP----EVKY---------------------------EF- 121 (444)
T ss_dssp SCEEEECCGGGCSCCCSEEEEECTT-CEEEECS---CCSSSC----CCCC---------------------------CB-
T ss_pred CCEEEecCCccccCCCCEEEEEcCC-cEEEEcc---CcccCc----ceee---------------------------cc-
Confidence 99999887654322 2211 2111111 111112 0001 24
Q ss_pred cccccc---cCCceeeeEEEEEEEeeeCC-------C---CeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCC
Q 012503 159 LSLKDI---SEHRYFDLVCKVFHVSYDDS-------K---GLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLD 225 (462)
Q Consensus 159 ~~L~di---~~~~f~Dlv~qVv~v~~~~~-------~---~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 225 (462)
..|.|| ..+..+|+++.|+.+. +.. + .+..+.+-|.
T Consensus 122 ~~i~~i~~~~~~~~vDViG~V~~v~-~~~~i~~k~~g~~~~kr~i~L~D~------------------------------ 170 (444)
T 4gop_C 122 VRINELESVEANQQCDVIGILDSYG-ELSEIVSKASQRPVQKRELTLVDQ------------------------------ 170 (444)
T ss_dssp CCGGGGGGSCSSCCCBEEEEEEEEC-CCEEECCTTTCSCEEEEEEEEECT------------------------------
T ss_pred cCHHHHhccCCCCceEEEEEEEEcC-CcEEEEEccCCceeeEEEEEEEeC------------------------------
Confidence 455555 4688999999999987 311 0 0112222221
Q ss_pred hhccccCCCcceEEEEEecccchhhhc--ccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceEEcCCCChhHHHHHhhhh
Q 012503 226 LETLRNFFPVGTVLRVSTDRSYENFGR--YFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRERI 303 (462)
Q Consensus 226 ~~~~~~~p~~G~~l~V~~~~~~~~~~~--~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~v~~~~rer~ 303 (462)
-|..+++++|+.+|.... .....|..|.|++++++..+|. .......|+|. ++++-|.+.+++ +..
T Consensus 171 ---------sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~-~ls~~~~s~i~-inPdipea~~l~-~w~ 238 (444)
T 4gop_C 171 ---------GNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR-SLSMFSSSTML-INPDITESHVLR-GWY 238 (444)
T ss_dssp ---------TCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSS-EEECCTTCEEE-ESCSSHHHHHHH-HHH
T ss_pred ---------CCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCe-EEeccccceEE-ECCCCHHHHHHH-HHH
Confidence 156789999999887422 1267899999999999987775 45556667774 455556655443 222
Q ss_pred cCCCCCCCCcCCCCCC------cccccccCCCCcccHHHHhhC-C---CCCceEEEEEEEEeecCCcc------cc----
Q 012503 304 SGGHGHMPIWTDPSSQ------FLTEVDWVNVASVTLMKIATQ-L---QGNVRCCCIVRVVSIHPFQA------EH---- 363 (462)
Q Consensus 304 ~~~~~~~~~~~~p~~~------~it~~~~~~~p~ttL~dIL~~-p---~v~~kfr~~VRVV~~~P~~~------ed---- 363 (462)
.++-...+..++.+.. ..........+..||.||++. + ..+..|.+.+.|+.+-+.+. .+
T Consensus 239 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~~C~k 318 (444)
T 4gop_C 239 DNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNK 318 (444)
T ss_dssp HHHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCSTTCCC
T ss_pred HcCCCCcccccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcccCCC
Confidence 2111111111110000 011011123467899999963 2 33556888888888765332 10
Q ss_pred ----------ccc------CCCceEEEEEEEEeCCCceEEEEEeccccccccCC
Q 012503 364 ----------YSS------PNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFGG 401 (462)
Q Consensus 364 ----------f~~------~~~~w~~~f~L~lED~t~ri~~~v~~~da~~f~~~ 401 (462)
.|. ++..|.|++.+.|.|.|+.+++.++++.|+.+||.
T Consensus 319 kv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~ 372 (444)
T 4gop_C 319 KVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGM 372 (444)
T ss_dssp BEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTS
T ss_pred ccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCC
Confidence 111 12367888999999999999999999999999964
No 6
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.48 E-value=5.9e-06 Score=78.95 Aligned_cols=220 Identities=18% Similarity=0.197 Sum_probs=133.5
Q ss_pred cceeehhhhhhccCCeEEEEEEEEecCCccc---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEE
Q 012503 8 GGIVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLIL 83 (462)
Q Consensus 8 y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~L-P~v~~~GDII~ 83 (462)
-.|++|+++.... ...++.|-|+....++. .+|..-..++.|.|++- .|.+.+|.+..+.+ |.+ ..|+++.
T Consensus 6 ~~~~~I~~L~p~~-~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~~~~~l-~~G~vy~ 80 (246)
T 1jmc_A 6 SKVVPIASLTPYQ-SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG---EIRATAFNEQVDKFFPLI-EVNKVYY 80 (246)
T ss_dssp -CBCCGGGCCTTC-CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEEHHHHHHHGGGC-CTTCEEE
T ss_pred cceEEHHHCCCCC-CceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC---eEEEEEChHHHHHhhhhc-ccCCEEE
Confidence 3688999997433 26899999999877653 24555678899999875 39999998654444 456 7999999
Q ss_pred EeeEEEEEEcCee-------EEEecCCceEEEEEeCCCCCCCCccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCcc
Q 012503 84 LKNVMIKKHQAEL-------SAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSND 156 (462)
Q Consensus 84 l~rvki~~~~g~~-------~~~~~~~~ss~~lf~~~~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~ 156 (462)
|.+++++..+++. ...++.. |.....+.. .-.| ...|.+. +
T Consensus 81 i~~~~v~~~~~~y~~~~~~~ei~~~~~-T~I~~~~~~---~~iP----~~~~~f~------------------------~ 128 (246)
T 1jmc_A 81 FSKGTLKIANKQFTAVKNDYEMTFNNE-TSVMPCEDD---HHLP----TVQFDFT------------------------G 128 (246)
T ss_dssp EECCEEEECCGGGCCCCCSEEEECCTT-CEEEECCSC---SCCC----CCCCCBC------------------------C
T ss_pred ECCCEEEEcccCcccCCCCEEEEEcCC-cEEEEccCc---ccCC----cceeeeE------------------------E
Confidence 9999999875443 3333322 222211111 0012 1112111 1
Q ss_pred cccccccccCCceeeeEEEEEEEeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccccCCCcc
Q 012503 157 YLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVG 236 (462)
Q Consensus 157 f~~~L~di~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G 236 (462)
| ..|.++..+.++|+++.|+.+. +.. .+.- -.||++..... ..+.| .-|
T Consensus 129 i-~~i~~~~~~~~vDViG~V~~v~-~~~--~~~~-k~~g~~~~~r~--~~l~D------------------------~sg 177 (246)
T 1jmc_A 129 I-DDLENKSKDSLVDIIGICKSYE-DAT--KITV-RSNNREVAKRN--IYLMD------------------------TSG 177 (246)
T ss_dssp G-GGGGGSCTTCEEEEEEEEEEEC-CCE--EEEE-TTTTEEEEEEE--EEEEC------------------------TTC
T ss_pred H-HHHhcccCCCceeEEEEEEEec-CeE--EEEE-ecCCCccEEEE--EEEEC------------------------CCC
Confidence 2 3344445688999999999887 311 1000 00121110000 00000 015
Q ss_pred eEEEEEecccchhhhcccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceEEcCCCChhHHHHH
Q 012503 237 TVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYM 299 (462)
Q Consensus 237 ~~l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~v~~~~ 299 (462)
.++++++|..+|.. -....|+.|.|++++++..+| ++......|+|. ++++-+.+.+++
T Consensus 178 ~~i~~tLWg~~a~~--~~~~~~~vv~i~~~~v~~f~g-~~ls~~~~s~i~-inpd~pe~~~l~ 236 (246)
T 1jmc_A 178 KVVTATLWGEDADK--FDGSRQPVLAIKGARVSDFGG-RSLSVLSSSTII-ANPDIPEAYKLR 236 (246)
T ss_dssp CEEEEEEEHHHHHH--CCCTTCCEEEEEEEEEECTTS-SEEECCSSCEEE-SSCCSHHHHHHH
T ss_pred CEEEEEEEchhhhh--cccCCCCEEEEEEEEEEecCC-eEEEecCcceEE-ECCCCHHHHHHH
Confidence 68899999998874 235889999999999998866 556666777784 666667665543
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.40 E-value=1.1e-06 Score=74.33 Aligned_cols=93 Identities=24% Similarity=0.343 Sum_probs=77.0
Q ss_pred CCCcceeehhhhhhccCCeEEEEEEEEecCCcc--ccC-CC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012503 5 RNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPR--KSQ-GT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRD 80 (462)
Q Consensus 5 ~~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~--~tr-G~-D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GD 80 (462)
..+|.+++|+++. .|+.++++|+|++.+.++ .++ |+ .-+.+++|.|.|- .|.+.+|.+..+.+..+ ..||
T Consensus 2 ~~~~~~~~I~~L~--~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG---~I~~t~w~~~~~~~~~l-~~G~ 75 (115)
T 2k50_A 2 KPEHRMDTISKLE--EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG---ELRAVFWTENIKLLKKF-REGD 75 (115)
T ss_dssp CCTTCCCCTTTCC--TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE---EEEEEEETTGGGGGGTC-CTTS
T ss_pred ccccceEEHHHCC--CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC---eEEEEEeCchhhhhhcC-CCCC
Confidence 3578889999997 788999999999998776 444 43 5789999999975 39999998765666667 7899
Q ss_pred EEEEeeEEEEE-EcCeeEEEecCC
Q 012503 81 LILLKNVMIKK-HQAELSAVFYKD 103 (462)
Q Consensus 81 II~l~rvki~~-~~g~~~~~~~~~ 103 (462)
+|.+.+..++. |+|++++.....
T Consensus 76 vv~i~g~~v~~~f~g~~qL~~~~~ 99 (115)
T 2k50_A 76 VIRIKDVNIRGGFGGRKEAHLMPR 99 (115)
T ss_dssp EEEEEEEEECCCSSSSCEEEECTT
T ss_pred EEEEEeeEEccccCCeEEEEECCC
Confidence 99999999987 999999888754
No 8
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.25 E-value=5.3e-06 Score=69.18 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=71.6
Q ss_pred cceeehhhhhhccCCe-EEEEEEEEecCCccccC-CCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 012503 8 GGIVRIKELAMHVKHK-VNLLGVVLEFSIPRKSQ-GTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (462)
Q Consensus 8 y~y~~i~d~~~~~~~~-vnviGVVvd~~~P~~tr-G~D-~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l 84 (462)
|.++.|+|+. ++.. ||++|.|++...|+.++ |+. ..+++.|.|+|= .|.++++.+. + ..||+|+|
T Consensus 1 ~~~~kI~dl~--pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG---~I~~tlW~~~------l-~~Gdvv~i 68 (106)
T 2k75_A 1 SDLVKIRDVS--LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA---RIRISSFGKQ------L-QDSDVVRI 68 (106)
T ss_dssp CCBCCSTTCC--TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC---EEEEEEESSC------C-CTTEEEEE
T ss_pred CCcEEHHHcC--CCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC---eEEEEEEcCc------c-CCCCEEEE
Confidence 6788999997 4554 99999999999886444 543 588999999875 3999999864 5 78999999
Q ss_pred eeEEEEEEcCeeEEEecCCceEEE
Q 012503 85 KNVMIKKHQAELSAVFYKDSSSFA 108 (462)
Q Consensus 85 ~rvki~~~~g~~~~~~~~~~ss~~ 108 (462)
++.+++.|+|++++..++. +...
T Consensus 69 ~ng~v~~~~g~~~L~v~~~-~~I~ 91 (106)
T 2k75_A 69 DNARVAQFNGYLSLSVGDS-SRIE 91 (106)
T ss_dssp EEEEEEEETTEEEEEECTT-SEEE
T ss_pred EeeEEeEECCEEEEEECCc-EEEE
Confidence 9999999999999888754 4333
No 9
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=98.07 E-value=4.1e-05 Score=65.03 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=70.4
Q ss_pred eeehhhhhhccCC-eEEEEEEEEecCCcc--ccC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 012503 10 IVRIKELAMHVKH-KVNLLGVVLEFSIPR--KSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (462)
Q Consensus 10 y~~i~d~~~~~~~-~vnviGVVvd~~~P~--~tr-G~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (462)
|+.|+++. .+. .++++|+|++...++ .++ |+--..++.|.|.|-. |.++++.+..+ .+ ..||||.++
T Consensus 2 f~~I~dL~--~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~---I~~tlW~~~~~---~~-~~G~vv~i~ 72 (119)
T 1o7i_A 2 EEKVGNLK--PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR---VKLTLWGKHAG---SI-KEGQVVKIE 72 (119)
T ss_dssp BCCGGGCC--TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE---EEEEEEGGGTT---CC-CTTCEEEEE
T ss_pred cEEHHHCc--CCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE---EEEEEECChhh---cC-CCCCEEEEE
Confidence 56788887 454 699999999998766 444 4347899999999752 99999986543 34 689999999
Q ss_pred eEEEEEEcCeeEEEecCCceEEE
Q 012503 86 NVMIKKHQAELSAVFYKDSSSFA 108 (462)
Q Consensus 86 rvki~~~~g~~~~~~~~~~ss~~ 108 (462)
+.+++.|+|++++...+. +...
T Consensus 73 ~g~v~~~~g~~qL~i~~~-~~i~ 94 (119)
T 1o7i_A 73 NAWTTAFKGQVQLNAGSK-TKIA 94 (119)
T ss_dssp EEEEEEETTEEEEEECTT-CEEE
T ss_pred eEEEEEeCCEEEEEECCC-EEEE
Confidence 999999999999888754 4444
No 10
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.02 E-value=2.1e-05 Score=75.12 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=71.8
Q ss_pred CCcceeehhhhhhc-cCCeEEEEEEEEecCCccc--c--CCCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012503 6 NQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPR 79 (462)
Q Consensus 6 ~~y~y~~i~d~~~~-~~~~vnviGVVvd~~~P~~--t--rG~D-~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~G 79 (462)
..|.|++|+++.+. .+..|+|+|+|++++++.. + .|++ .+..|+|.|.|-. .|.|.++.+..+.++. ..|
T Consensus 122 ~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~--~i~~tLWg~~a~~~~~--~~~ 197 (246)
T 1jmc_A 122 VQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGK--VVTATLWGEDADKFDG--SRQ 197 (246)
T ss_dssp CCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCC--EEEEEEEHHHHHHCCC--TTC
T ss_pred ceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCC--EEEEEEEchhhhhccc--CCC
Confidence 45789999999863 5678999999999998754 2 3554 5789999999853 4999999986666663 579
Q ss_pred CEEEEeeEEEEEEcCeeEEEec
Q 012503 80 DLILLKNVMIKKHQAELSAVFY 101 (462)
Q Consensus 80 DII~l~rvki~~~~g~~~~~~~ 101 (462)
+||.++.++++.|+| ..+...
T Consensus 198 ~vv~i~~~~v~~f~g-~~ls~~ 218 (246)
T 1jmc_A 198 PVLAIKGARVSDFGG-RSLSVL 218 (246)
T ss_dssp CEEEEEEEEEECTTS-SEEECC
T ss_pred CEEEEEEEEEEecCC-eEEEec
Confidence 999999999999955 555544
No 11
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.00 E-value=2.9e-05 Score=80.66 Aligned_cols=91 Identities=15% Similarity=0.279 Sum_probs=71.5
Q ss_pred CCcceeehhhhhhc-cCCeEEEEEEEEecCCccc--c--CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCC--CCC
Q 012503 6 NQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPR--VLS 77 (462)
Q Consensus 6 ~~y~y~~i~d~~~~-~~~~vnviGVVvd~~~P~~--t--rG~-D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~--v~~ 77 (462)
..|.|++|+++.+. .+..|+|||+|+++++++. + .|+ -.+..|+|.|.|-. .|.|.++.+..+.+.. ...
T Consensus 117 ~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~--~i~~tLWg~~A~~f~~~~~~~ 194 (444)
T 4gop_C 117 VKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNR--SVKLTLWGKTAETFPTNAGVD 194 (444)
T ss_dssp CCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCB--EEEEEEEHHHHHTSTTSTTSS
T ss_pred eeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCC--EEEEEEEhhhhhhhhhhhccC
Confidence 46889999999863 5667999999999998753 2 354 57889999999863 3999999876555552 125
Q ss_pred CCCEEEEeeEEEEEEcCeeEEE
Q 012503 78 PRDLILLKNVMIKKHQAELSAV 99 (462)
Q Consensus 78 ~GDII~l~rvki~~~~g~~~~~ 99 (462)
.|+||.++.++|+.|+|. .+.
T Consensus 195 ~~~VV~i~~~kV~~f~G~-~ls 215 (444)
T 4gop_C 195 EKPVLAFKGVKVGDFGGR-SLS 215 (444)
T ss_dssp SCCEEEEESCEEECTTSS-EEE
T ss_pred CCCEEEEEeEEEeecCCe-EEe
Confidence 799999999999999996 443
No 12
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.68 E-value=0.00042 Score=57.85 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=66.6
Q ss_pred eeehhhhhhccCCeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEE
Q 012503 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMI 89 (462)
Q Consensus 10 y~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~rvki 89 (462)
++.|+|+... +..||++|.|++...|+ .|+.+ ..+.|-|+|= .|.++++.+. ..+.+ ..||+|+|+++++
T Consensus 5 ~~kI~dl~~~-~~~v~v~~~V~~~~~~~--~~~~~-~~~~l~DeTG---~I~~t~W~~~--~~~~~-~~G~~V~i~n~~v 74 (109)
T 2kbn_A 5 LTKIVDIVEN-GQWANLKAKVIQLWENT--HESIS-QVGLLGDETG---IIKFTIWKNA--ELPLL-EQGESYLLRSVVV 74 (109)
T ss_dssp BCCTTTCCST-TCEEEEEEEEEEEEECC--CSSEE-EEEEEECTTC---CEEEEEEGGG--CCCCC-CTTCEEEEEEEEE
T ss_pred ceEHHHCCCC-CCcEEEEEEEEEeEcCC--CCeEE-EEEEEECCCC---eEEEEEECcc--ccccc-CCCCEEEEEEEEE
Confidence 5568888632 56799999999998753 24444 4588999874 3999999843 57788 7899999999999
Q ss_pred EEEcCeeEEEecCC
Q 012503 90 KKHQAELSAVFYKD 103 (462)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (462)
+.|+|++++..++.
T Consensus 75 ~~~~G~~~L~v~~~ 88 (109)
T 2kbn_A 75 GEYNDRFQVQVNKN 88 (109)
T ss_dssp EEETTEEEEEECSS
T ss_pred EEECCEEEEEECCc
Confidence 99999999888754
No 13
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.59 E-value=0.00023 Score=59.01 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=65.9
Q ss_pred ceeehhhhhhccCCeEEEEEEEEecCCcccc---CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 012503 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKS---QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (462)
Q Consensus 9 ~y~~i~d~~~~~~~~vnviGVVvd~~~P~~t---rG~-D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l 84 (462)
.|.+|+++. ++..+|++|+|++.++++.- .|+ -...+++|.|.|- .+.+.+|.+.. .+ .+ .+||+|.+
T Consensus 4 ~~~~I~dL~--~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG---~IrvtlW~~~a-~~-~l-~~Gdvv~i 75 (105)
T 3dm3_A 4 DTYNIGELS--PGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG---SIRVTLWDNLT-DI-DV-GRGDYVRV 75 (105)
T ss_dssp CEECGGGCC--SSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE---EEEEEEEGGGG-GS-CC-CTTCEEEE
T ss_pred cceEHHHCC--CCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECccc-cc-cc-CCCCEEEE
Confidence 578999998 55789999999999987542 354 4678999999865 39999998644 34 55 79999999
Q ss_pred eeEEEEEEc-CeeEEEec
Q 012503 85 KNVMIKKHQ-AELSAVFY 101 (462)
Q Consensus 85 ~rvki~~~~-g~~~~~~~ 101 (462)
+..++.++ |.+.+...
T Consensus 76 -~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 76 -RGYIREGYYGGLECTAN 92 (105)
T ss_dssp -EEEEEECTTSSEEEEEE
T ss_pred -EEEEEEccCCCEEEEeC
Confidence 89999884 47777665
No 14
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=97.58 E-value=0.00093 Score=55.42 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=66.3
Q ss_pred cccccccCCce-eeeEEEEEEEeeeCC---CC----eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccc
Q 012503 159 LSLKDISEHRY-FDLVCKVFHVSYDDS---KG----LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLR 230 (462)
Q Consensus 159 ~~L~di~~~~f-~Dlv~qVv~v~~~~~---~~----~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 230 (462)
..|+||+++.- ++++++|+.+. +.. ++ -..+.|=|-|
T Consensus 4 ~kI~dl~pg~~~v~v~~~V~~~~-~~~~~k~G~~~~v~~~~l~DeT---------------------------------- 48 (106)
T 2k75_A 4 VKIRDVSLSTPYVSVIGKITGIH-KKEYESDGTTKSVYQGYIEDDT---------------------------------- 48 (106)
T ss_dssp CCSTTCCTTCSEEEEEEEEEEEE-EEEEEETTEEEEEEEEEEECSS----------------------------------
T ss_pred EEHHHcCCCCceEEEEEEEEEcc-ccccccCCCeeEEEEEEEEcCC----------------------------------
Confidence 67999999865 89999999988 421 11 1122222211
Q ss_pred cCCCcceEEEEEecccchhhhcccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceEEcCCCCh
Q 012503 231 NFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (462)
Q Consensus 231 ~~p~~G~~l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (462)
| ++++++|++. +++|+.|+|+|..++.+.|.++-.+...++|..+++.++
T Consensus 49 -----G-~I~~tlW~~~-------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~~~~~~~ 98 (106)
T 2k75_A 49 -----A-RIRISSFGKQ-------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIESVNVNIP 98 (106)
T ss_dssp -----C-EEEEEEESSC-------CCTTEEEEEEEEEEEEETTEEEEEECTTSEEEECCSCCC
T ss_pred -----C-eEEEEEEcCc-------cCCCCEEEEEeeEEeEECCEEEEEECCcEEEEECCCCCc
Confidence 3 4689999855 899999999999999999999999999999988776554
No 15
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.47 E-value=0.00073 Score=56.63 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=70.3
Q ss_pred cccccccCCceeeeEEEEEEEeee----C-C---CCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccc
Q 012503 159 LSLKDISEHRYFDLVCKVFHVSYD----D-S---KGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLR 230 (462)
Q Consensus 159 ~~L~di~~~~f~Dlv~qVv~v~~~----~-~---~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 230 (462)
..|+|+++|..+|+++.|+.+... . + .....+.|.|.|
T Consensus 8 ~~I~~L~~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~T---------------------------------- 53 (115)
T 2k50_A 8 DTISKLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDT---------------------------------- 53 (115)
T ss_dssp CCTTTCCTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETT----------------------------------
T ss_pred EEHHHCCCCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCC----------------------------------
Confidence 679999999999999999998411 1 1 124555566644
Q ss_pred cCCCcceEEEEEecccchhhhcccCCCCCEEEEEceEEEE-eCcEEEEEEeeCCceEEcCC
Q 012503 231 NFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV-SSGMWHGLLQSSSKIRLFSD 290 (462)
Q Consensus 231 ~~p~~G~~l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~-~~g~leG~l~~~ski~~l~~ 290 (462)
| .+++++|+..+.. ...+++|+.|.|.|..++. +.|.++..+...+.+...++
T Consensus 54 -----G-~I~~t~w~~~~~~-~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 54 -----G-ELRAVFWTENIKL-LKKFREGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp -----E-EEEEEEETTGGGG-GGTCCTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESS
T ss_pred -----C-eEEEEEeCchhhh-hhcCCCCCEEEEEeeEEccccCCeEEEEECCCceEEECCc
Confidence 3 5679999987664 4679999999999999876 77888889988888876554
No 16
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=97.39 E-value=0.0019 Score=54.60 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=65.9
Q ss_pred cccccccCCc-eeeeEEEEEEEee--e--CCCC---eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccc
Q 012503 159 LSLKDISEHR-YFDLVCKVFHVSY--D--DSKG---LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLR 230 (462)
Q Consensus 159 ~~L~di~~~~-f~Dlv~qVv~v~~--~--~~~~---~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 230 (462)
..|+||+++. -+|+++.|+.+.. . ..++ ...+.|-|-|
T Consensus 3 ~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~T---------------------------------- 48 (119)
T 1o7i_A 3 EKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDET---------------------------------- 48 (119)
T ss_dssp CCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETT----------------------------------
T ss_pred EEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCC----------------------------------
Confidence 6799999986 7999999998861 1 0111 2222222211
Q ss_pred cCCCcceEEEEEecccchhhhcccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceEEcCC
Q 012503 231 NFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSD 290 (462)
Q Consensus 231 ~~p~~G~~l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~ 290 (462)
|. +++++|+..+ +.+++|+.|+++|..++.+.|.++..+...+.|...++
T Consensus 49 -----G~-I~~tlW~~~~----~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~ 98 (119)
T 1o7i_A 49 -----GR-VKLTLWGKHA----GSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASE 98 (119)
T ss_dssp -----EE-EEEEEEGGGT----TCCCTTCEEEEEEEEEEEETTEEEEEECTTCEEEECCC
T ss_pred -----CE-EEEEEECChh----hcCCCCCEEEEEeEEEEEeCCEEEEEECCCEEEEEcCC
Confidence 54 7899999765 34899999999999999999999999999999987664
No 17
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.36 E-value=0.0037 Score=51.98 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=66.4
Q ss_pred cccccccC-CceeeeEEEEEEEeeeCCCCe--EEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccccCCCc
Q 012503 159 LSLKDISE-HRYFDLVCKVFHVSYDDSKGL--WMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (462)
Q Consensus 159 ~~L~di~~-~~f~Dlv~qVv~v~~~~~~~~--~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~ 235 (462)
..|+||++ +..++++++|+.+. +...+. ..+-|=|.|
T Consensus 6 ~kI~dl~~~~~~v~v~~~V~~~~-~~~~~~~~~~~~l~DeT--------------------------------------- 45 (109)
T 2kbn_A 6 TKIVDIVENGQWANLKAKVIQLW-ENTHESISQVGLLGDET--------------------------------------- 45 (109)
T ss_dssp CCTTTCCSTTCEEEEEEEEEEEE-ECCCSSEEEEEEEECTT---------------------------------------
T ss_pred eEHHHCCCCCCcEEEEEEEEEeE-cCCCCeEEEEEEEECCC---------------------------------------
Confidence 67999987 78899999999998 522211 112222222
Q ss_pred ceEEEEEecccchhhhcccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceEEcCCC
Q 012503 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (462)
Q Consensus 236 G~~l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~ 291 (462)
| +++.++|+.. ....+++|+.|+|+|..++.+.|.++-.+...+.|..++.+
T Consensus 46 G-~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 46 G-IIKFTIWKNA---ELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp C-CEEEEEEGGG---CCCCCCTTCEEEEEEEEEEEETTEEEEEECSSSEEEECSSC
T ss_pred C-eEEEEEECcc---cccccCCCCEEEEEEEEEEEECCEEEEEECCceEEEECCCc
Confidence 3 4588999843 24679999999999999999999999999998888776543
No 18
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=97.36 E-value=0.00089 Score=54.60 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=63.0
Q ss_pred eehhhhhhccCCeEEEEEEEEecCCccc-cC--CC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 012503 11 VRIKELAMHVKHKVNLLGVVLEFSIPRK-SQ--GT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (462)
Q Consensus 11 ~~i~d~~~~~~~~vnviGVVvd~~~P~~-tr--G~-D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r 86 (462)
.+|+++. ++..++++|.|++..+++. ++ |+ --..+++|.|+|- .|.+.+|.+. ..+ .+ ++||+|.+ +
T Consensus 3 ~kI~dl~--~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG---~I~~tlW~~~-~~~-~i-~~Gdvv~i-~ 73 (97)
T 3e0e_A 3 YKISELM--PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG---SIRGTLWNEL-ADF-EV-KKGDIAEV-S 73 (97)
T ss_dssp ECGGGCC--TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE---EEEEEEEGGG-GGC-CC-CTTCEEEE-E
T ss_pred eEHHHCC--CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECCc-ccc-cc-CCCCEEEE-E
Confidence 3688887 5678999999999998765 22 54 3688899999865 3999999864 344 56 79999999 8
Q ss_pred EEEEEEcCeeEEEecC
Q 012503 87 VMIKKHQAELSAVFYK 102 (462)
Q Consensus 87 vki~~~~g~~~~~~~~ 102 (462)
.+++.+.|.+++...+
T Consensus 74 g~v~~~~~~~el~~g~ 89 (97)
T 3e0e_A 74 GYVKQGYSGLEISVDN 89 (97)
T ss_dssp EEEEEC--CEEEEEEE
T ss_pred EEEEEcCCeEEEEECC
Confidence 8999999988877653
No 19
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.35 E-value=0.0042 Score=54.35 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=42.2
Q ss_pred EEEEEecccchhhhcccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceEEcCCC
Q 012503 238 VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (462)
Q Consensus 238 ~l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~ 291 (462)
++++++|+..+. .+++||.|+|+|..+++..|.++..+...++|..++..
T Consensus 74 ~I~ftlW~e~~~----~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e~ 123 (145)
T 1wjj_A 74 CILFTARNDQVD----LMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAA 123 (145)
T ss_dssp EEEEEECTTHHH----HTCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSCC
T ss_pred EEEEEEecCCcC----cCCCCCEEEEeccEEEeECCEEEEEECCCEEEEECCCC
Confidence 568999997554 48899999999999999999999988888888766543
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.17 E-value=0.0013 Score=57.71 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=68.3
Q ss_pred CCCcceeehhhhhhccCC-eEEEEEEEEecCCcc---cc-C--C-------CceEEEEEEEeCCCCCCCeEEEEecCCCC
Q 012503 5 RNQGGIVRIKELAMHVKH-KVNLLGVVLEFSIPR---KS-Q--G-------TDYVCVLKIVDDSQQSPELLVNIFTSSID 70 (462)
Q Consensus 5 ~~~y~y~~i~d~~~~~~~-~vnviGVVvd~~~P~---~t-r--G-------~D~~~tl~I~D~s~~~~gl~v~iF~~~~~ 70 (462)
..+..|+.|+|+. ++. .+|+.|.|++...+. +. | | ..-.+++.|-|++=. |.+.+..+.
T Consensus 11 ~~kp~~~kI~dL~--pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~---I~ftlW~e~-- 83 (145)
T 1wjj_A 11 KRKPVFVKVEQLK--PGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC---ILFTARNDQ-- 83 (145)
T ss_dssp CCCCSSCCSTTCC--TTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE---EEEEECTTH--
T ss_pred ccCccceEHHHcC--CCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE---EEEEEecCC--
Confidence 3456788999997 443 499999999988765 22 2 4 356788899998753 777777642
Q ss_pred CCCCCCCCCCEEEEeeEEEEEEcCeeEEEecCC
Q 012503 71 QLPRVLSPRDLILLKNVMIKKHQAELSAVFYKD 103 (462)
Q Consensus 71 ~LP~v~~~GDII~l~rvki~~~~g~~~~~~~~~ 103 (462)
.+.+ ..||+|+|+++.+..|+|.+.+..++.
T Consensus 84 -~~~l-~~Gd~v~i~na~v~~~~G~~~L~vgk~ 114 (145)
T 1wjj_A 84 -VDLM-KPGATVILRNSRIDMFKGTMRLGVDKW 114 (145)
T ss_dssp -HHHT-CTTCEEEEEEEEEEEETTEEEEEECTT
T ss_pred -cCcC-CCCCEEEEeccEEEeECCEEEEEECCC
Confidence 3345 589999999999999999998877643
No 21
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.84 E-value=0.015 Score=48.04 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=61.1
Q ss_pred cccccccccCCceeeeEEEEEEEeeeCC-----CC----eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChh
Q 012503 157 YLLSLKDISEHRYFDLVCKVFHVSYDDS-----KG----LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLE 227 (462)
Q Consensus 157 f~~~L~di~~~~f~Dlv~qVv~v~~~~~-----~~----~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 227 (462)
| ..|+||+++..+|+++.|+.+. +.. ++ ...+.|-|.|
T Consensus 5 ~-~~I~dL~~~~~v~v~g~V~~~~-~~r~~~~~~G~~~~v~~~~l~D~T------------------------------- 51 (105)
T 3dm3_A 5 T-YNIGELSPGMTATFEGEVISAL-PIKEFKRADGSIGKLKSFIVRDET------------------------------- 51 (105)
T ss_dssp E-ECGGGCCSSEEEEEEEEEEEEE-EEEEEECTTSCEEEEEEEEEEETT-------------------------------
T ss_pred c-eEHHHCCCCCeEEEEEEEEECC-CceEEEcCCCCeeEEEEEEEECCC-------------------------------
Confidence 5 7899999999999999999887 310 00 1222233322
Q ss_pred ccccCCCcceEEEEEecccchhhhcccCCCCCEEEEEceEEEEe-CcEEEEEEeeCCceE
Q 012503 228 TLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-SGMWHGLLQSSSKIR 286 (462)
Q Consensus 228 ~~~~~p~~G~~l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~~-~g~leG~l~~~ski~ 286 (462)
| .+++++|+..+.. .+++|+.|.| |-.++.. .|-+|..+-..+.|.
T Consensus 52 --------G-~IrvtlW~~~a~~---~l~~Gdvv~i-~g~vk~~~~g~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 52 --------G-SIRVTLWDNLTDI---DVGRGDYVRV-RGYIREGYYGGLECTANYVEILK 98 (105)
T ss_dssp --------E-EEEEEEEGGGGGS---CCCTTCEEEE-EEEEEECTTSSEEEEEEEEEEEE
T ss_pred --------C-cEEEEEECccccc---ccCCCCEEEE-EEEEEEccCCCEEEEeCCceEEE
Confidence 5 5799999987764 7999999999 8888884 667777777666654
No 22
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.34 E-value=0.038 Score=44.78 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=56.9
Q ss_pred cccccccCCceeeeEEEEEEEeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccccCCCcceE
Q 012503 159 LSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTV 238 (462)
Q Consensus 159 ~~L~di~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~~ 238 (462)
..|+||+++..++++++|+.+. + .-...-.||++-.-.. ..+.| --| .
T Consensus 3 ~kI~dl~~g~~v~i~~~V~~~~-~----~r~~~~~~G~~~~v~~--~~l~D------------------------eTG-~ 50 (97)
T 3e0e_A 3 YKISELMPNLSGTINAEVVTAY-P----KKEFSRKDGTKGQLKS--LFLKD------------------------DTG-S 50 (97)
T ss_dssp ECGGGCCTTEEEEEEEEEEEEC-C----CEEEC----CCEEEEE--EEEEE------------------------TTE-E
T ss_pred eEHHHCCCCCcEEEEEEEEECC-C----ceEEEcCCCCeeEEEE--EEEEC------------------------CCC-c
Confidence 3699999999999999999887 2 1111112332110000 00000 015 6
Q ss_pred EEEEecccchhhhcccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceE
Q 012503 239 LRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR 286 (462)
Q Consensus 239 l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~ 286 (462)
+++++|+..+.. .+++||.|.+ |=.++...|.+|..+-..+.|.
T Consensus 51 I~~tlW~~~~~~---~i~~Gdvv~i-~g~v~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 51 IRGTLWNELADF---EVKKGDIAEV-SGYVKQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EEEEEEGGGGGC---CCCTTCEEEE-EEEEEEC--CEEEEEEEEEEEE
T ss_pred EEEEEECCcccc---ccCCCCEEEE-EEEEEEcCCeEEEEECCCcEEE
Confidence 799999977753 7999999999 6677777777777777666653
No 23
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.083 Score=44.00 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=45.1
Q ss_pred ceEEEEEecccchhhhcccCCCCCEEEEEceEEEEe-------CcEEEEEEeeCCceEEcCC
Q 012503 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-------SGMWHGLLQSSSKIRLFSD 290 (462)
Q Consensus 236 G~~l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~~-------~g~leG~l~~~ski~~l~~ 290 (462)
| .+++++|...+......+++|+|+.|.|-.++.. .+-+|-.|...+.|...++
T Consensus 51 G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 51 G-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp E-EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred C-eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 7 8899999988776567899999999999999983 2467889999998876654
No 24
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=95.64 E-value=0.13 Score=50.12 Aligned_cols=156 Identities=14% Similarity=0.055 Sum_probs=97.4
Q ss_pred ccccccccccCCceeeeEEEEEEEeee----CCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhcccc
Q 012503 156 DYLLSLKDISEHRYFDLVCKVFHVSYD----DSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRN 231 (462)
Q Consensus 156 ~f~~~L~di~~~~f~Dlv~qVv~v~~~----~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 231 (462)
+| ..|++++.++.+|+++-|+..... ..+...+|.++|-+.
T Consensus 5 ~y-~~l~~l~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~---------------------------------- 49 (294)
T 1xjv_A 5 IY-TPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN---------------------------------- 49 (294)
T ss_dssp CC-CCGGGCCSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC----------------------------------
T ss_pred eE-EEHHHhhCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC----------------------------------
Confidence 46 789999999999999999977631 123478888888330
Q ss_pred CCCcceEEEEEecccchhhhcccC-CCCCEEEEEceEEEEeCcEEEEEEeeCCceEEcCCCC------------------
Q 012503 232 FFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDND------------------ 292 (462)
Q Consensus 232 ~p~~G~~l~V~~~~~~~~~~~~~~-k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d------------------ 292 (462)
-| |+|.++.++.+. ...+ ++||.|+|+|++++.+.|.+.|.......+.+.+...
T Consensus 50 ---~g--l~v~iF~~~~~~-LP~v~~~GDII~l~~vki~~~~g~~~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~ 123 (294)
T 1xjv_A 50 ---VK--LTCLLFSGNYEA-LPIIYKNGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTE 123 (294)
T ss_dssp ---CE--EEEEEEESSGGG-SCCCCSTTCEEEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHH
T ss_pred ---CC--EEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCeEEEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHH
Confidence 03 456677666654 5666 9999999999999999888877554333322222110
Q ss_pred -hhHHHHHhhhhcCCCCCCCCcCCCCCCcccccccCCCCcccHHHHhhCCCCCceEEEEEEEEeecCCcccccccCCCce
Q 012503 293 -NVVWDYMRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSS 371 (462)
Q Consensus 293 -~~v~~~~rer~~~~~~~~~~~~~p~~~~it~~~~~~~p~ttL~dIL~~p~v~~kfr~~VRVV~~~P~~~edf~~~~~~w 371 (462)
......+|+..++ .++ ..-++++|+||-. ..-|-..|+||+....+ .+
T Consensus 124 e~~~~~~Lr~w~~~---------~~~---------~~~~~~~L~di~~----~~f~DLv~qVv~v~~~~-------~~-- 172 (294)
T 1xjv_A 124 DHKMVEALRVWAST---------HMS---------PSWTLLKLCDVQP----MQYFDLTCQLLGKAEVD-------GA-- 172 (294)
T ss_dssp HHHHHHHHHHHHHH---------HCC------------CCCCGGGCCS----SCEEEEEEEEEEEEECS-------SS--
T ss_pred HHHHHHHHHHHHHh---------ccC---------CCCceeEHHHccc----CCeeeEEEEEEEEEecC-------CC--
Confidence 0111111211110 000 1124677888753 34589999999864322 24
Q ss_pred EEEEEEEEeCCCce
Q 012503 372 EYTMKLTLEDPTAR 385 (462)
Q Consensus 372 ~~~f~L~lED~t~r 385 (462)
++.|.|-|.|..
T Consensus 173 --~~~LyVwDgT~~ 184 (294)
T 1xjv_A 173 --SFLLKVWDGTRT 184 (294)
T ss_dssp --EEEEEEECSSCC
T ss_pred --eEEEEEECCCCC
Confidence 578999999864
No 25
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=94.87 E-value=0.24 Score=44.92 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=60.3
Q ss_pred cccccCCceeeeEEEEEEEee--eC---C-CCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccccCCC
Q 012503 161 LKDISEHRYFDLVCKVFHVSY--DD---S-KGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFP 234 (462)
Q Consensus 161 L~di~~~~f~Dlv~qVv~v~~--~~---~-~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~ 234 (462)
|.+++.++.+|+++-|+.... .. . +-..+|.|+|=+- . .
T Consensus 36 l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~----~------------~------------------- 80 (187)
T 1qzg_A 36 QELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTC----D------------T------------------- 80 (187)
T ss_dssp TSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTS----C------------T-------------------
T ss_pred HhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCC----C------------C-------------------
Confidence 455678999999999987652 22 2 3478899999331 0 0
Q ss_pred cceEEEEEecccchhhhcccC-CCCCEEEEEceEEEEeCcEEEEEEeeCCce
Q 012503 235 VGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSSSKI 285 (462)
Q Consensus 235 ~G~~l~V~~~~~~~~~~~~~~-k~g~wV~l~Nv~~k~~~g~leG~l~~~ski 285 (462)
.+..|.|.++.++.+. ...+ ++||.|+|+|++++.+.|...|........
T Consensus 81 ~~~gL~v~iF~~~~e~-LP~V~~~GDIIlL~rvkiq~~~g~~~~v~~~~~s~ 131 (187)
T 1qzg_A 81 SSIGLQIHLFSKQGND-LPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQFRY 131 (187)
T ss_dssp TSCCEEEEEEESSSSC-SCCCCSTTCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCceEEEEECCChhh-CCCCCCCCCEEEEEEEEEEEECCeEEEEEcCceeE
Confidence 0112456666555543 4555 889999999999999999888866554333
No 26
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=93.73 E-value=0.46 Score=42.80 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=51.6
Q ss_pred CcccHHHHhhC----CCCCceEEEEEEEEeecCCcccccccC--------------------------CCceEEEEEEEE
Q 012503 330 ASVTLMKIATQ----LQGNVRCCCIVRVVSIHPFQAEHYSSP--------------------------NGSSEYTMKLTL 379 (462)
Q Consensus 330 p~ttL~dIL~~----p~v~~kfr~~VRVV~~~P~~~edf~~~--------------------------~~~w~~~f~L~l 379 (462)
+..||+||... ..-+.-|.+.+.|+.+-+.+.-=-++| +-.|.|.+.+.|
T Consensus 6 ~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~~i 85 (181)
T 1l1o_C 6 NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNI 85 (181)
T ss_dssp CBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEEE
T ss_pred ceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEEEE
Confidence 56789998862 123445888888887766433111111 226889999999
Q ss_pred eCCCceEEEEEeccccccccC
Q 012503 380 EDPTARIHALLCGKEWVKFFG 400 (462)
Q Consensus 380 ED~t~ri~~~v~~~da~~f~~ 400 (462)
.|.|+.+++.++++.|+.+||
T Consensus 86 ~D~Tg~~~~t~F~~~ae~ilG 106 (181)
T 1l1o_C 86 ADFQENQWVTCFQESAEAILG 106 (181)
T ss_dssp ECSSCEEEEEEEHHHHHHHHS
T ss_pred EeCCCCEEEEEEhHHHHHHhC
Confidence 999999999999999999996
No 27
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=93.64 E-value=0.63 Score=35.83 Aligned_cols=84 Identities=21% Similarity=0.207 Sum_probs=67.2
Q ss_pred ehhhhhhccCCeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEEE
Q 012503 12 RIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMIK 90 (462)
Q Consensus 12 ~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~-~~~~LP~v~~~GDII~l~rvki~ 90 (462)
-|+++++...+..++.+-|+|... +|--+.++|.|.|+.. .++|.||-. .-|.--.. ++.---.+..+.-|
T Consensus 3 lisevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvrq 74 (109)
T 3u4z_A 3 LISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVRQ 74 (109)
T ss_dssp CHHHHTTCCCSEEEEEEEEEEEEC------CSSCEEEEEECSSCSS-CEEEEECTTHHHHHTTTC-CTTCEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhc------CCCceEEEeecccccc-eeEEEEchhHHHHHHhhc-chhhhhhHHHHHHH
Confidence 367888778888999999999854 5777899999999974 499999974 22344445 67888889999999
Q ss_pred EEcCeeEEEecCC
Q 012503 91 KHQAELSAVFYKD 103 (462)
Q Consensus 91 ~~~g~~~~~~~~~ 103 (462)
.||+++++-.|-.
T Consensus 75 iyndevqlknnih 87 (109)
T 3u4z_A 75 IYNDEVQLKNNIH 87 (109)
T ss_dssp ESSSCEEEECCTT
T ss_pred HhhhHHhHhhhhh
Confidence 9999999887754
No 28
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.38 E-value=0.95 Score=38.61 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=50.6
Q ss_pred CeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC----CCCCCCCCCCEEEEeeEEEEEEcCeeE
Q 012503 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID----QLPRVLSPRDLILLKNVMIKKHQAELS 97 (462)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~----~LP~v~~~GDII~l~rvki~~~~g~~~ 97 (462)
..|.+.|+|.+... + .=.++++|-|.|- .|.++++-...+ ..+.+ .+|++|++..- ++.|+|+.+
T Consensus 37 ~~V~iVG~V~~~~~-----~-~~~~~~~ldD~TG---~I~~~~W~~~~~~~~~~~~~~-~~g~yVrV~G~-v~~f~g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISR-----N-ATNVAYSVEDGTG---QIEVRQWLDSSSDDSSKASEI-RNNVYVRVLGT-LKSFQNRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEE-----C-SSEEEEEEECSSC---EEEEEEECC--------CCSC-CTTCEEEEEEE-EEEETTEEE
T ss_pred EEEEEEEEEEEEEe-----c-CCeEEEEEECCCC---CEEEEEecccCCccccccccc-CCCCEEEEEEE-EEEeCCEEE
Confidence 35899999999853 1 2367888988764 399999975443 46777 69999999665 899999987
Q ss_pred EEec
Q 012503 98 AVFY 101 (462)
Q Consensus 98 ~~~~ 101 (462)
+...
T Consensus 106 i~~~ 109 (136)
T 4gop_B 106 ISSG 109 (136)
T ss_dssp EEES
T ss_pred EEEE
Confidence 6654
No 29
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=92.32 E-value=1.4 Score=47.89 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=95.7
Q ss_pred eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEEEEEcC-----eeEEEecCCceEEEEEeCCCCCCC
Q 012503 44 YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA-----ELSAVFYKDSSSFALFDGNSGSNL 118 (462)
Q Consensus 44 ~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~rvki~~~~g-----~~~~~~~~~~ss~~lf~~~~~~~~ 118 (462)
=..+++|+|-.-.....-++|-+|+.+ +......|.+.++.++.....++ .+++.+.+. |.|---+.... .+
T Consensus 511 p~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAtk~-T~~~~L~~~~~-~~ 587 (738)
T 1miu_A 511 TVWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATKR-TQYQQLPVSSE-TL 587 (738)
T ss_dssp CEEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEEE-EEEEEECCCHH-HH
T ss_pred eeEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCCccCccceEEEeeccc-ceeEECCcchh-hh
Confidence 467788888554445688899998655 44434789999999998876654 256655533 66653321110 00
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccccc---ccCCceeeeEEEEEEEeeeCCCCeEEEEEEcC
Q 012503 119 LPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKD---ISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDG 195 (462)
Q Consensus 119 ~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~~~L~d---i~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDg 195 (462)
.+ . |++. ... .| ..|.+ ....+.||++|-||.|- ...+..-.+|+.|+
T Consensus 588 ~~-----~-~~pR-------------------~~~--~~-~~l~~~~f~p~~~EvDivG~Vv~v~-~~~~~~~~vylsD~ 638 (738)
T 1miu_A 588 LQ-----V-YQPR-------------------ESL--HF-SRLSDPAFQPPCSEVDVVGVVVSVV-KPIGLAPLVYLSDE 638 (738)
T ss_dssp TT-----T-CCCC-------------------CBC--CS-GGGGSSSCCTTTTEEEEEEEEEEEE-CCTTSCCEEEEECS
T ss_pred cc-----c-cCCc-------------------cee--eH-HHhcCccccCCCCceeEEEEEEEEc-ccCcccceEEEEcC
Confidence 00 0 1111 111 23 44444 45689999999999997 43445568888885
Q ss_pred CCCCCCCCCCCCCcccCCCCCCcccCCCCChhccccCCCcceEEEEEecccchhhhcccCCCCCEEEEEceEEEE
Q 012503 196 TDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV 270 (462)
Q Consensus 196 T~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~~l~V~~~~~~~~~~~~~~k~g~wV~l~Nv~~k~ 270 (462)
.-| .|-|.+|..-.+ + +++|..|-+.|++.+-
T Consensus 639 ~~n---------------------------------------ll~Ikf~~~l~e---D-~~~~~~va~sNL~~r~ 670 (738)
T 1miu_A 639 CLN---------------------------------------LLVVKFGIDLNE---D-IKPRVLIAASNLQCQP 670 (738)
T ss_dssp SSC---------------------------------------EEEEEESSCCCS---C-CCSSCEEEEEEEECCS
T ss_pred CCc---------------------------------------EEEEEEecCchh---h-CccccEEEEeeeEeec
Confidence 411 224667765442 3 9999999999999887
No 30
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.24 E-value=0.046 Score=45.61 Aligned_cols=82 Identities=11% Similarity=0.153 Sum_probs=63.2
Q ss_pred ceeehhhhhhccCC-eEEEEEEEEecCCccc---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEE
Q 012503 9 GIVRIKELAMHVKH-KVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLIL 83 (462)
Q Consensus 9 ~y~~i~d~~~~~~~-~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~L-P~v~~~GDII~ 83 (462)
.+++|+++. ++. ..++.|-|+....++. .+|....+++.|.|++- .|.+.+|.+..+.+ +.+ .+|+|+.
T Consensus 3 ~~~~Is~L~--p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~ 76 (114)
T 1ynx_A 3 PIFAIEQLS--PYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG---EIRATAFNDFATKFNEIL-QEGKVYY 76 (114)
T ss_dssp CBCCGGGCC--TTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE---EEEEEECHHHHHHHHHHS-CSSSEEE
T ss_pred ceEEHHHCC--CCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC---eEEEEECHHHHHHHHhhc-ccCcEEE
Confidence 578999997 443 4899999998766532 25667889999999974 49999998755544 445 7999999
Q ss_pred EeeEEEEEEcCee
Q 012503 84 LKNVMIKKHQAEL 96 (462)
Q Consensus 84 l~rvki~~~~g~~ 96 (462)
+.+.+|+.-+++.
T Consensus 77 Is~~~V~~a~~~y 89 (114)
T 1ynx_A 77 VSKAKLQPAKPQF 89 (114)
T ss_dssp EESCEEEECCTTT
T ss_pred ECCcEEEECCCCc
Confidence 9999999865543
No 31
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=91.60 E-value=1.5 Score=37.18 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=49.1
Q ss_pred CeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEEcCeeEE
Q 012503 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (462)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~---~LP~v~~~GDII~l~rvki~~~~g~~~~ 98 (462)
..|.+.|+|.+... .+-.++++|-|.+-. .|.+.++....+ ....+ ..||.|++..- ++.|+|+.++
T Consensus 32 ~~V~iVG~V~~~~~------~~~~~~~~ldD~TG~--~I~~~~W~~~~~~~~~~~~~-~~g~yVrV~G~-l~~f~g~~qi 101 (132)
T 3kdf_D 32 SQVTIVGIIRHAEK------APTNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTVV-PPETYVKVAGH-LRSFQNKKSL 101 (132)
T ss_dssp CEEEEEEEEEEEEE------CSSEEEEEEECSSSS--CEEEEEEC---------CCC-CTTCEEEEEEE-EEEETTEEEE
T ss_pred EEEEEEEEEEEEEE------cCCeEEEEEECCCCC--EEEEEEEccCCCcccccccc-cCCCEEEEEEE-EEeECCEEEE
Confidence 35899999999853 234678889997641 399999976432 25566 68999999765 8999999776
Q ss_pred Eec
Q 012503 99 VFY 101 (462)
Q Consensus 99 ~~~ 101 (462)
...
T Consensus 102 ~~~ 104 (132)
T 3kdf_D 102 VAF 104 (132)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 32
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=90.94 E-value=1.3 Score=46.28 Aligned_cols=107 Identities=12% Similarity=0.064 Sum_probs=70.5
Q ss_pred ccccccccc--cCCceeeeEEEEEEEee--eC--CCCeEEEEEEcCCCC-CCCCCCCCCCcccCCCCCCcccCCCCChhc
Q 012503 156 DYLLSLKDI--SEHRYFDLVCKVFHVSY--DD--SKGLWMLFVWDGTDV-PPLSIPGKLEDEEHNPLPLHIESSPLDLET 228 (462)
Q Consensus 156 ~f~~~L~di--~~~~f~Dlv~qVv~v~~--~~--~~~~~~L~VwDgT~~-~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 228 (462)
.| ..|+++ +.++.+|+++-|+.... .. .+...+|.|+|-+-+ +... . .| +.
T Consensus 37 ~y-~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~----~-----~G---------l~--- 94 (495)
T 1jb7_A 37 EY-VELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQK----G-----AG---------DA--- 94 (495)
T ss_dssp CB-CCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTT----S-----SC---------SC---
T ss_pred cc-EEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCccccc----c-----cc---------cc---
Confidence 57 789988 47999999999997652 11 234889999995532 1100 0 00 00
Q ss_pred cccCCCcceEEEEEecccchhhhcccC-CCCCEEEEEceEEEEeCcEEEEEEeeC--CceEEcCCCC
Q 012503 229 LRNFFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSS--SKIRLFSDND 292 (462)
Q Consensus 229 ~~~~p~~G~~l~V~~~~~~~~~~~~~~-k~g~wV~l~Nv~~k~~~g~leG~l~~~--ski~~l~~~d 292 (462)
...+.|.++.++.+. ...+ ++||.|+|+|++++.+.|...|..... +.+.+.+...
T Consensus 95 -------~~~~~v~iF~~~~e~-LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~ 153 (495)
T 1jb7_A 95 -------SDYATLVLYAKRFED-LPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDK 153 (495)
T ss_dssp -------BCCEEEEEEESSGGG-SCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSS
T ss_pred -------cCceEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCc
Confidence 012356666665554 5666 689999999999999999888877654 4565555443
No 33
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=90.52 E-value=0.25 Score=45.32 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=57.1
Q ss_pred cceeehhhhhhc------cCCeEEEEEEEEecCCccccC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012503 8 GGIVRIKELAMH------VKHKVNLLGVVLEFSIPRKSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRD 80 (462)
Q Consensus 8 y~y~~i~d~~~~------~~~~vnviGVVvd~~~P~~tr-G~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GD 80 (462)
..|++|.+++.. .....-++|||++-..|+.+. |+.| +..+|.|-.-....+.+-+|....+.+=.+ .+|+
T Consensus 36 ~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~gk~y-~~w~l~DL~~~~~~V~lfLFg~a~~~~~k~-~~G~ 113 (200)
T 3ebe_A 36 RKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTF-SIWRLNDLKDLDKYISLFLFGDVHKEHWKT-DQGT 113 (200)
T ss_dssp CEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-------CC-EEEEEECSSSTTCCEEEEECHHHHHHHTTC-CTTE
T ss_pred CeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCCCCeE-EEEEEEecCCCCcEEEEEEechHHHHhcCc-CCce
Confidence 467888888652 123466999999999998874 5555 568898876654569999998755556677 6999
Q ss_pred EEEEeeEEEE
Q 012503 81 LILLKNVMIK 90 (462)
Q Consensus 81 II~l~rvki~ 90 (462)
||-|-|-.+-
T Consensus 114 ViaiLNP~i~ 123 (200)
T 3ebe_A 114 VIGLLNANPM 123 (200)
T ss_dssp EEEEESCEEC
T ss_pred EEEEECCEEc
Confidence 9999999874
No 34
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=89.58 E-value=3.2 Score=35.31 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=68.7
Q ss_pred eehhhhhhccCCeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEE
Q 012503 11 VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMI 89 (462)
Q Consensus 11 ~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~-~~~~LP~v~~~GDII~l~rvki 89 (462)
.-|+++++...+..+|.+-|+|... +|--+.++|.|.|+.. .++|.||-+ .-|.--.. ++.---.+....-
T Consensus 120 llisevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvr 191 (213)
T 3u58_A 120 LLISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVR 191 (213)
T ss_dssp BCHHHHTTCCCSEEEEEEEEEEEEE------CSSCEEEEEECTTCSC-CEEEEECTTTTGGGTTCC-CTTCEEEEEEEEE
T ss_pred eehHHHHHHhHHHHHHHHHhhcccc------CCCceEEEeecccccc-eeEEEEchhHhhHhhhhc-chhhhhhHHHHHH
Confidence 4578888888889999999999754 5777899999999974 499999975 33555555 7888888888888
Q ss_pred EEEcCeeEEEecCC
Q 012503 90 KKHQAELSAVFYKD 103 (462)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (462)
|.||+++++-.|-.
T Consensus 192 qiyndevqlknnih 205 (213)
T 3u58_A 192 QIYNDEVQLKNNIH 205 (213)
T ss_dssp CCSSSSCEEECCTT
T ss_pred HHhhhhhhhhhhhh
Confidence 99999998877643
No 35
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=89.01 E-value=0.66 Score=40.20 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=56.1
Q ss_pred ceeehhhhhhccCCeEEEEEEEEecCCccccCCCceEEEEEEEeCCCC--------------CC------CeEEEEecCC
Q 012503 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ--------------SP------ELLVNIFTSS 68 (462)
Q Consensus 9 ~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~--------------~~------gl~v~iF~~~ 68 (462)
+|.-|+|+. .++.++++|=|+.. +. .+ -.++|.|+|=+.. |. .|.|.+|-++
T Consensus 4 kf~llkdv~--~~~F~Dl~~qVv~~--~~--~~--~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~h 75 (143)
T 4hik_A 4 SFSLLSQIT--PHQRCSFYAQVIKT--WY--SD--KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEH 75 (143)
T ss_dssp CCCCGGGCC--SSCEEEEEEEEEEE--EE--CS--SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHH
T ss_pred hhhhHHhCC--CCCeEEEEEEEEEE--Ec--CC--CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcH
Confidence 466788987 78999999999983 21 22 5688889985543 11 2899998765
Q ss_pred CCCCCC-CCCCCCEEEEeeEEEEEEcC
Q 012503 69 IDQLPR-VLSPRDLILLKNVMIKKHQA 94 (462)
Q Consensus 69 ~~~LP~-v~~~GDII~l~rvki~~~~g 94 (462)
.+..=. + .+||.|+|+|++|+.-.+
T Consensus 76 a~~ar~~l-k~Gd~v~L~Nv~iK~~~~ 101 (143)
T 4hik_A 76 DFYCRNYI-KEGDYVVMKNVRTKIDHL 101 (143)
T ss_dssp HHHHTTTC-CTTCEEEEEEEEEEECTT
T ss_pred HHHHHhhC-CCCCEEEEEeEEEeecCC
Confidence 433333 5 689999999999987643
No 36
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=87.81 E-value=3.2 Score=39.58 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=55.8
Q ss_pred eehhhhhhcc--C----------CeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCC
Q 012503 11 VRIKELAMHV--K----------HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRV 75 (462)
Q Consensus 11 ~~i~d~~~~~--~----------~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~---~LP~v 75 (462)
++|+++++.. + ..|.++|+|++... ++ =.++++|-|.+-. -|.++++....+ ....+
T Consensus 49 vtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~-----~~-~~~~~~L~D~TG~--~I~~k~W~~~~~~~~~~~~~ 120 (270)
T 2pi2_A 49 CTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK-----AP-TNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTVV 120 (270)
T ss_dssp CCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEE-----CS-SEEEEEEECSSSS--CEEEEEECC-------CCCC
T ss_pred EEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEe-----cc-ceEEEEEECCCCC--EEEEEEEcCcCcccchhhcC
Confidence 4577777631 1 25889999999742 23 3568889997631 299999975432 34556
Q ss_pred CCCCCEEEEeeEEEEEEcCeeEEEec
Q 012503 76 LSPRDLILLKNVMIKKHQAELSAVFY 101 (462)
Q Consensus 76 ~~~GDII~l~rvki~~~~g~~~~~~~ 101 (462)
..|++|+++. +++.|+|+.++...
T Consensus 121 -~~G~yVrV~G-~v~~f~g~~qi~i~ 144 (270)
T 2pi2_A 121 -PPETYVKVAG-HLRSFQNKKSLVAF 144 (270)
T ss_dssp -CTTCEEEEEE-EEEEETTEEEEEEE
T ss_pred -CCCCEEEEEE-EEEecCCeeEEEEE
Confidence 6899999975 88899999877664
No 37
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=83.46 E-value=0.33 Score=43.49 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=30.6
Q ss_pred CceEEEEEEEEeCCCceEEEEEeccccccccCC
Q 012503 369 GSSEYTMKLTLEDPTARIHALLCGKEWVKFFGG 401 (462)
Q Consensus 369 ~~w~~~f~L~lED~t~ri~~~v~~~da~~f~~~ 401 (462)
-.|.|.+.+.|.|.|+.+++.++++.|+.|||.
T Consensus 71 ~~~RYil~~~i~D~TG~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 71 PQVHLMLRAFVQDSTGTIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp CEEEECEEEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred ceEEEEEEEEEEeCCCCEEEEEEhHHHHHHhCC
Confidence 358889999999999999999999999999986
No 38
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=80.60 E-value=17 Score=30.57 Aligned_cols=81 Identities=16% Similarity=0.024 Sum_probs=52.2
Q ss_pred CCceeeeEEEEEEEeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccccCCCcceEEEEEecc
Q 012503 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDR 245 (462)
Q Consensus 166 ~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~~l~V~~~~ 245 (462)
+=+.+.+++.|+.+. + ......+.+-|||+. |.+..|.
T Consensus 35 ~i~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~----------------------------------------I~~~~W~ 72 (136)
T 4gop_B 35 ELGQLTFVAVVRNIS-R-NATNVAYSVEDGTGQ----------------------------------------IEVRQWL 72 (136)
T ss_dssp BCCEEEEEEEEEEEE-E-CSSEEEEEEECSSCE----------------------------------------EEEEEEC
T ss_pred EEEEEEEEEEEEEEE-e-cCCeEEEEEECCCCC----------------------------------------EEEEEec
Confidence 446789999999997 5 567889999999851 2345555
Q ss_pred cchhh---hcccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceEEcCCCC
Q 012503 246 SYENF---GRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDND 292 (462)
Q Consensus 246 ~~~~~---~~~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d 292 (462)
..+.. ....+++|++|++..- ++...|..+-.. .+|+.+.+.+
T Consensus 73 ~~~~~~~~~~~~~~~g~yVrV~G~-v~~f~g~~qi~~---~~ir~v~d~N 118 (136)
T 4gop_B 73 DSSSDDSSKASEIRNNVYVRVLGT-LKSFQNRRSISS---GHMRPVIDYN 118 (136)
T ss_dssp C--------CCSCCTTCEEEEEEE-EEEETTEEEEEE---SEEEECSSHH
T ss_pred ccCCcccccccccCCCCEEEEEEE-EEEeCCEEEEEE---EEEEECCCcc
Confidence 43321 1467899999997765 455667654433 3455555433
No 39
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=78.04 E-value=20 Score=30.02 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=50.2
Q ss_pred ceeeeEEEEEEEeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccccCCCcceEEEEEecccc
Q 012503 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (462)
Q Consensus 168 ~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~~l~V~~~~~~ 247 (462)
+.+.+++.|+.+. + ....+.+.+-|||++ .+.+..|...
T Consensus 32 ~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~---------------------------------------~I~~~~W~~~ 70 (132)
T 3kdf_D 32 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAA---------------------------------------PMDVRQWVDT 70 (132)
T ss_dssp CEEEEEEEEEEEE-E-CSSEEEEEEECSSSS---------------------------------------CEEEEEEC--
T ss_pred EEEEEEEEEEEEE-E-cCCeEEEEEECCCCC---------------------------------------EEEEEEEccC
Confidence 5689999999997 5 578899999999962 1123444432
Q ss_pred hh--hhcccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceEEcCCCC
Q 012503 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDND 292 (462)
Q Consensus 248 ~~--~~~~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d 292 (462)
+. .....+++|++|+...- ++...|..+... .+|+.+++.+
T Consensus 71 ~~~~~~~~~~~~g~yVrV~G~-l~~f~g~~qi~~---~~ir~v~d~N 113 (132)
T 3kdf_D 71 DDTSSENTVVPPETYVKVAGH-LRSFQNKKSLVA---FKIMPLEDMN 113 (132)
T ss_dssp -------CCCCTTCEEEEEEE-EEEETTEEEEEE---EEEEECSSTH
T ss_pred CCcccccccccCCCEEEEEEE-EEeECCEEEEEE---EEEEEcCCcc
Confidence 21 11356899999997765 555667654433 3455555544
No 40
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=74.86 E-value=37 Score=32.08 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=52.7
Q ss_pred ceeeeEEEEEEEeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCChhccccCCCcceEEEEEecccc
Q 012503 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (462)
Q Consensus 168 ~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~~l~V~~~~~~ 247 (462)
..+.+++.|.++. . ....+.+.+-|+|+. .|.+.+|...
T Consensus 72 ~~V~ivG~V~~i~-~-~~~~~~~~L~D~TG~---------------------------------------~I~~k~W~~~ 110 (270)
T 2pi2_A 72 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAA---------------------------------------PMDVRQWVDT 110 (270)
T ss_dssp SEEEEEEEEEEEE-E-CSSEEEEEEECSSSS---------------------------------------CEEEEEECC-
T ss_pred EEEEEEEEEEEEE-e-ccceEEEEEECCCCC---------------------------------------EEEEEEEcCc
Confidence 5789999999997 5 567888999998851 1235556533
Q ss_pred hh--hhcccCCCCCEEEEEceEEEEeCcEEEEEEeeCCceEEcCCCCh
Q 012503 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (462)
Q Consensus 248 ~~--~~~~~~k~g~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (462)
+. .....+++|++|++.- +++...|..+-... +|+.+.+.+.
T Consensus 111 ~~~~~~~~~~~~G~yVrV~G-~v~~f~g~~qi~i~---~ir~v~d~nE 154 (270)
T 2pi2_A 111 DDTSSENTVVPPETYVKVAG-HLRSFQNKKSLVAF---KIMPLEDMNE 154 (270)
T ss_dssp ------CCCCCTTCEEEEEE-EEEEETTEEEEEEE---EEEECSCTHH
T ss_pred CcccchhhcCCCCCEEEEEE-EEEecCCeeEEEEE---EEEecCCHhH
Confidence 22 1235689999999876 55566776655443 4666665443
No 41
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=59.51 E-value=12 Score=32.66 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=46.6
Q ss_pred CeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEEcCeeEE
Q 012503 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (462)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~---~LP~v~~~GDII~l~rvki~~~~g~~~~ 98 (462)
.+|.+.|+|+.... +.+ ...++|=|.|- .-|.|.++-+... .+.....+|++|+++. .|+.|+|+.++
T Consensus 48 ~~V~IvGiVv~~~~-~~~-----~~~ytIDD~TG--~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G-~v~~fr~~rqI 118 (159)
T 3kf6_A 48 RWIQIVGYIAAIDI-YEG-----KHVLTVDDCSG--MVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG-KINSFRSEVEL 118 (159)
T ss_dssp CEEEEEEEEEEEEE-ETT-----EEEEEEECSSS--CEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE-EEECSSSSCEE
T ss_pred EEEEEEEEEEEEEE-eCC-----EEEEEEecCCC--CeEEEEEEccCCCCcccccccCCCCCEEEEEE-EEEeeCCEEEE
Confidence 46899999999763 111 25666666652 2389998875311 1122237899999955 67889998776
Q ss_pred Eec
Q 012503 99 VFY 101 (462)
Q Consensus 99 ~~~ 101 (462)
...
T Consensus 119 ~~~ 121 (159)
T 3kf6_A 119 IAQ 121 (159)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 42
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=59.38 E-value=18 Score=29.81 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCEEEEee-------EEEEEEcCeeEEEecCC-ceEEEEEe
Q 012503 70 DQLPRVLSPRDLILLKN-------VMIKKHQAELSAVFYKD-SSSFALFD 111 (462)
Q Consensus 70 ~~LP~v~~~GDII~l~r-------vki~~~~g~~~~~~~~~-~ss~~lf~ 111 (462)
.++|.+ .+||+|.+|= =++|.|.|-+.+.-+.+ .++|.|=+
T Consensus 14 ~~iP~f-~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRk 62 (114)
T 3r8s_P 14 QDVPSF-RPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRK 62 (114)
T ss_dssp SCCCCC-CTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEE
T ss_pred cCCCcc-CCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEE
Confidence 579999 7999999973 24677777655554433 35677643
No 43
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=56.29 E-value=18 Score=29.06 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=26.6
Q ss_pred CCCCCCCCCEEEEeeE------EEEEEcCeeEEEecCC-ceEEEEEeCCCC
Q 012503 72 LPRVLSPRDLILLKNV------MIKKHQAELSAVFYKD-SSSFALFDGNSG 115 (462)
Q Consensus 72 LP~v~~~GDII~l~rv------ki~~~~g~~~~~~~~~-~ss~~lf~~~~~ 115 (462)
+|.+ ++||+|.+|=- ++|.|.|-+.+.-+.+ .++|.|=+-..+
T Consensus 1 iP~f-~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~g 50 (98)
T 2ftc_K 1 IPEF-YVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEG 50 (98)
T ss_pred CCcc-CCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccC
Confidence 5888 79999999821 2466666554444433 356776544433
No 44
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=53.23 E-value=20 Score=31.23 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=51.1
Q ss_pred cccCCCCcccHHHHhh-CCCCCceEEEEEEEEeecCCcccccccCCCceEEEEEEEEeCCCceEEEEEeccccccccC
Q 012503 324 VDWVNVASVTLMKIAT-QLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFG 400 (462)
Q Consensus 324 ~~~~~~p~ttL~dIL~-~p~v~~kfr~~VRVV~~~P~~~edf~~~~~~w~~~f~L~lED~t~ri~~~v~~~da~~f~~ 400 (462)
.+-.+-|||=|.-++. .|+.+..|+...-|+. -.+.+..+.| .|.+...+.|.|+.++|.+.++=-..+.|
T Consensus 16 ~~l~s~PFtYL~~l~~~~~~~~~~~kVKafI~t----l~~~l~~~~~--~W~l~a~IsDGS~~LdV~f~~~VLt~lIG 87 (157)
T 3mxn_A 16 MDLYSPPFVYLSVLMASKPKEVTTVKVKAFIVT----LTGNLSSSGG--IWSITAKVSDGTAYLDVDFVDEILTSLIG 87 (157)
T ss_dssp HHHHCSSCCCHHHHHHTCCSSCEEEEEEEEEEE----ECSCCBCGGG--SCBCEEEEECSSCEEEEEECHHHHHHHHS
T ss_pred cccCCCchHHHHHHHhhccCCceEEEEEEEEEE----eccceeecCC--EEEEEEEEeCCceeEEEEeeHHHHHhhhC
Confidence 3446789999999985 4555555554444444 4555555667 78999999999999999887766666665
No 45
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=52.81 E-value=35 Score=37.05 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=50.8
Q ss_pred eehhhhhh----ccCCeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 012503 11 VRIKELAM----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (462)
Q Consensus 11 ~~i~d~~~----~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r 86 (462)
+++.++.. ....-|+++|+|+...... . ..-.+-|.|.+..- +.|+++..-.++ + .+|.+|-+.|
T Consensus 597 ~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~--~---~~~~vylsD~~~nl--l~Ikf~~~l~eD---~-~~~~~va~sN 665 (738)
T 1miu_A 597 LHFSRLSDPAFQPPCSEVDVVGVVVSVVKPI--G---LAPLVYLSDECLNL--LVVKFGIDLNED---I-KPRVLIAASN 665 (738)
T ss_dssp CCSGGGGSSSCCTTTTEEEEEEEEEEEECCT--T---SCCEEEEECSSSCE--EEEEESSCCCSC---C-CSSCEEEEEE
T ss_pred eeHHHhcCccccCCCCceeEEEEEEEEcccC--c---ccceEEEEcCCCcE--EEEEEecCchhh---C-ccccEEEEee
Confidence 34555553 3566799999999986532 1 12256689998743 777777765565 6 7999999999
Q ss_pred EEEEEEc
Q 012503 87 VMIKKHQ 93 (462)
Q Consensus 87 vki~~~~ 93 (462)
++.+...
T Consensus 666 L~~r~~~ 672 (738)
T 1miu_A 666 LQCQPES 672 (738)
T ss_dssp EECCSCC
T ss_pred eEeeccc
Confidence 9998654
No 46
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=49.89 E-value=66 Score=27.93 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=23.0
Q ss_pred CceeeeEEEEEEEeeeCCCCeEEEEEEcCCC
Q 012503 167 HRYFDLVCKVFHVSYDDSKGLWMLFVWDGTD 197 (462)
Q Consensus 167 ~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~ 197 (462)
=+++++++.|+++. + ...+..+.|=|||+
T Consensus 47 I~~V~IvGiVv~~~-~-~~~~~~ytIDD~TG 75 (159)
T 3kf6_A 47 IRWIQIVGYIAAID-I-YEGKHVLTVDDCSG 75 (159)
T ss_dssp ECEEEEEEEEEEEE-E-ETTEEEEEEECSSS
T ss_pred EEEEEEEEEEEEEE-E-eCCEEEEEEecCCC
Confidence 36789999999998 4 45677778888884
No 47
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=49.81 E-value=21 Score=40.38 Aligned_cols=85 Identities=15% Similarity=0.298 Sum_probs=60.4
Q ss_pred ceeehhhhhhccCCeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCC---CCCCCCCCCEEEEe
Q 012503 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQ---LPRVLSPRDLILLK 85 (462)
Q Consensus 9 ~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~---LP~v~~~GDII~l~ 85 (462)
..++|.++.... ..|-|-|-|.+... +.+|......+|.|+|-+. +|.|+.|.++.+. +-.+ ..|+-|+++
T Consensus 6 ~~~~~~~~~~~~-~~~~~~g~v~~~~~-~~~~~~~~~~~~~~td~~~---~~~~k~f~~~~~~~~~~~~~-~~g~~~~~~ 79 (1041)
T 3f2b_A 6 PVRRLETIVEEE-RRVVVQGYVFDAEV-SELKSGRTLLTMKITDYTN---SILVKMFSRDKEDAELMSGV-KKGMWVKVR 79 (1041)
T ss_dssp -CBCGGGCCSCE-EEEEEEEEEEEEEE-EECTTSCEEEEEEEECSSC---EEEEEEECSSHHHHHHHHTC-CTTCEEEEE
T ss_pred CcccHHHhhccc-ceEEEEEEEEEEEE-EEccCCCEEEEEEEEeCCC---CEEEEEeecccchHHHHhcC-CCCCEEEEE
Confidence 456788887443 35889999988643 4455556889999999854 4999999865443 3456 689999997
Q ss_pred -eEEEEEEcCeeEEE
Q 012503 86 -NVMIKKHQAELSAV 99 (462)
Q Consensus 86 -rvki~~~~g~~~~~ 99 (462)
++....|.+++...
T Consensus 80 g~~~~d~~~~~~~~~ 94 (1041)
T 3f2b_A 80 GSVQNDTFVRDLVII 94 (1041)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeccCCcceEEE
Confidence 56777777765433
No 48
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=49.18 E-value=41 Score=38.15 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=28.3
Q ss_pred ccccccc-CCceeeeEEEEEEEee-eCCC--CeEEEEEEcCCCC
Q 012503 159 LSLKDIS-EHRYFDLVCKVFHVSY-DDSK--GLWMLFVWDGTDV 198 (462)
Q Consensus 159 ~~L~di~-~~~f~Dlv~qVv~v~~-~~~~--~~~~L~VwDgT~~ 198 (462)
..|++|. +...+-+.++|.++.. +..+ .-.+++|+|||+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~ 51 (1041)
T 3f2b_A 8 RRLETIVEEERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNS 51 (1041)
T ss_dssp BCGGGCCSCEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCE
T ss_pred ccHHHhhcccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCC
Confidence 5788886 4566788889988763 3223 3568899999853
No 49
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=47.83 E-value=33 Score=29.40 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCEEEEeeE-------EEEEEcCeeEEEecCC-ceEEEEEe
Q 012503 70 DQLPRVLSPRDLILLKNV-------MIKKHQAELSAVFYKD-SSSFALFD 111 (462)
Q Consensus 70 ~~LP~v~~~GDII~l~rv-------ki~~~~g~~~~~~~~~-~ss~~lf~ 111 (462)
.++|.+ .+||+|.+|=- ++|.|.|-+.+.-+.+ .++|.|=.
T Consensus 17 ~diP~F-~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRk 65 (146)
T 3v2d_T 17 TDLPEF-RPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRK 65 (146)
T ss_dssp CCCCCC-CTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEE
T ss_pred ccCCCc-CCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEE
Confidence 579999 79999999743 2466777655544433 35677633
No 50
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=29.63 E-value=42 Score=38.74 Aligned_cols=76 Identities=22% Similarity=0.259 Sum_probs=36.7
Q ss_pred eehhhhhh-----ccCCeEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 012503 11 VRIKELAM-----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (462)
Q Consensus 11 ~~i~d~~~-----~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (462)
++++++.. ..|+.|.+.|+|+..+.|. |+..+-++-++|-|.+-. +.|.+|.+..+........|.++.++
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~-Tk~G~~maf~tleD~tg~---~evvvf~~~~~~~~~~l~~~~~~~v~ 1102 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRKP-TRSGGMMARFTLSDETGA---LEVVVFGRAYEGVSPKLKEDIPLLVL 1102 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC-------------CEEEEETTEE---EEEC-------------CTTCEEEEE
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEee-cCCCCeEEEEEEEECCCC---EEEEEcHHHHHHHHHHhccCCEEEEE
Confidence 35566642 3567799999999988764 554577899999998753 99999998777777765666777664
Q ss_pred eEEEEE
Q 012503 86 NVMIKK 91 (462)
Q Consensus 86 rvki~~ 91 (462)
.+++.
T Consensus 1103 -G~v~~ 1107 (1220)
T 2hpi_A 1103 -AEVEK 1107 (1220)
T ss_dssp -EEEC-
T ss_pred -EEEEE
Confidence 46653
No 51
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=26.91 E-value=47 Score=29.13 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCEEEEee-E------EEEEEcCeeEEEecCC-ceEEEEEeC
Q 012503 70 DQLPRVLSPRDLILLKN-V------MIKKHQAELSAVFYKD-SSSFALFDG 112 (462)
Q Consensus 70 ~~LP~v~~~GDII~l~r-v------ki~~~~g~~~~~~~~~-~ss~~lf~~ 112 (462)
.++|.+ .+||+|++|= + ++|.|.|-+.+.-+.+ .++|.|=+-
T Consensus 22 ~diP~F-r~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRki 71 (166)
T 2zjr_M 22 RQLPDF-RPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKI 71 (166)
T ss_dssp CCCCCC-SSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEE
T ss_pred cCCCCc-CCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEe
Confidence 579999 7999999982 2 3577888655554433 356776443
No 52
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=26.65 E-value=65 Score=28.16 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=48.9
Q ss_pred CeEEEEEEEEecCCccccCCCceEEEEEEEe-CCCC-----------CCCeEEEEecCCCCCCCCCCCCCCEEEEe-eEE
Q 012503 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVD-DSQQ-----------SPELLVNIFTSSIDQLPRVLSPRDLILLK-NVM 88 (462)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D-~s~~-----------~~gl~v~iF~~~~~~LP~v~~~GDII~l~-rvk 88 (462)
.+|.|+|-|..--..+.|....-.++|+|.= .... ..-+.|.+|.+..+.+-.-...||-|.+. +++
T Consensus 5 N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~ 84 (168)
T 3afp_A 5 TTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLK 84 (168)
T ss_dssp CEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEEEE
Confidence 4788999988654445565456788899963 3221 12499999987555554422689988777 889
Q ss_pred EEEEcC
Q 012503 89 IKKHQA 94 (462)
Q Consensus 89 i~~~~g 94 (462)
.+.|.+
T Consensus 85 ~~~~~d 90 (168)
T 3afp_A 85 QRSFET 90 (168)
T ss_dssp EEEEC-
T ss_pred eeeEEC
Confidence 999974
No 53
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=23.26 E-value=62 Score=26.17 Aligned_cols=25 Identities=12% Similarity=-0.219 Sum_probs=22.2
Q ss_pred EEEEEecccchhhhcccCCCCCEEE
Q 012503 238 VLRVSTDRSYENFGRYFTATGKWVR 262 (462)
Q Consensus 238 ~l~V~~~~~~~~~~~~~~k~g~wV~ 262 (462)
-++|.+|...|+.+.+.++.|+.|.
T Consensus 54 fi~vv~wgk~AE~~~~yl~KG~~V~ 78 (108)
T 3koj_A 54 RLKVVGWGAVAQELQDRCRLNDEVV 78 (108)
T ss_dssp EEEEEEETHHHHHHHHHCCTTCEEE
T ss_pred EEEEEEEhHHHHHHHHhCCCCCEEE
Confidence 5789999999998888899999994
No 54
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Probab=22.93 E-value=68 Score=27.64 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=17.9
Q ss_pred ceEEEEEecccch----hhhcccCCCC-CEEEEE
Q 012503 236 GTVLRVSTDRSYE----NFGRYFTATG-KWVRIR 264 (462)
Q Consensus 236 G~~l~V~~~~~~~----~~~~~~~k~g-~wV~l~ 264 (462)
|+.+.|++.+... ..++-.+..| |||...
T Consensus 105 GRAvdit~sd~d~~k~g~La~lAv~aGFDwV~y~ 138 (150)
T 2ibg_E 105 GRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYV 138 (150)
T ss_dssp TCEEEEEETTCCGGGHHHHHHHHHHHTCSEEECC
T ss_pred ceeEEEEecCCChHHHHHHHHHHHHcCCCEEEeC
Confidence 7888999865322 1333345666 999544
No 55
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=21.13 E-value=1.5e+02 Score=22.57 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=29.3
Q ss_pred ccccc--cCCceeeeEEEEEEEeeeCCCCeEEEEEEcCCCCCC
Q 012503 160 SLKDI--SEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPP 200 (462)
Q Consensus 160 ~L~di--~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~ 200 (462)
+|+++ ...+|..+.+||+.+. . .+....|++-|.+-|..
T Consensus 3 lisevlktskqylsvlaqvvdiq-s-sdknirlkicdnscnqe 43 (109)
T 3u4z_A 3 LISEVLKTSKQYLSVLAQVVDIQ-S-SDKNIRLKICDNSCNQE 43 (109)
T ss_dssp CHHHHTTCCCSEEEEEEEEEEEE-C-CSSCEEEEEECSSCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHhhhh-c-CCCceEEEeecccccce
Confidence 44554 3678999999999998 4 56788999999665433
Done!