Query 012504
Match_columns 462
No_of_seqs 562 out of 2920
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 03:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.5E-72 3.3E-77 556.9 54.0 454 5-460 125-582 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.4E-69 2.9E-74 548.3 53.5 452 6-461 291-746 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 2E-62 4.3E-67 496.2 48.3 431 6-442 190-626 (857)
4 PLN03218 maturation of RBCL 1; 100.0 8E-61 1.7E-65 476.3 50.0 434 12-448 382-854 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 6.8E-60 1.5E-64 469.6 47.9 433 6-442 443-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.2E-55 6.9E-60 433.6 41.0 384 58-444 79-465 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-27 3.3E-32 247.0 45.9 420 7-437 438-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.1E-27 1.5E-31 242.0 46.5 417 7-433 472-898 (899)
9 PRK11447 cellulose synthase su 99.9 2.1E-20 4.5E-25 194.9 45.5 422 8-435 120-700 (1157)
10 PRK11447 cellulose synthase su 99.9 7.7E-20 1.7E-24 190.7 47.3 409 11-433 280-738 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 5.8E-22 1.3E-26 177.2 25.9 363 65-439 115-489 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 2.7E-20 5.9E-25 182.4 38.4 360 69-436 130-572 (615)
13 PRK11788 tetratricopeptide rep 99.9 2E-21 4.4E-26 181.0 28.7 304 146-454 45-366 (389)
14 KOG4626 O-linked N-acetylgluco 99.9 9.7E-21 2.1E-25 169.5 28.2 368 45-424 127-508 (966)
15 PRK15174 Vi polysaccharide exp 99.9 3.7E-19 8E-24 173.9 39.7 350 49-406 20-386 (656)
16 PRK11788 tetratricopeptide rep 99.9 1.2E-19 2.6E-24 169.0 30.7 293 74-400 43-346 (389)
17 PRK10049 pgaA outer membrane p 99.9 2.4E-18 5.1E-23 171.9 40.6 387 45-438 26-459 (765)
18 PRK15174 Vi polysaccharide exp 99.9 1.7E-18 3.7E-23 169.3 38.5 355 76-438 15-384 (656)
19 PRK09782 bacteriophage N4 rece 99.9 2.3E-17 5E-22 165.2 44.3 413 7-437 115-708 (987)
20 PRK10049 pgaA outer membrane p 99.9 2.8E-17 6.1E-22 164.2 43.3 395 5-408 20-463 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 3.8E-17 8.3E-22 160.3 37.6 350 48-406 141-576 (615)
22 PRK14574 hmsH outer membrane p 99.8 6.8E-16 1.5E-20 151.6 42.5 418 14-438 48-516 (822)
23 PRK09782 bacteriophage N4 rece 99.8 3.3E-15 7.3E-20 149.8 42.7 263 166-438 476-743 (987)
24 PRK14574 hmsH outer membrane p 99.8 1.6E-15 3.5E-20 149.0 39.3 393 37-437 37-481 (822)
25 KOG4422 Uncharacterized conser 99.8 1.3E-14 2.9E-19 125.1 37.6 391 12-438 127-593 (625)
26 KOG2002 TPR-containing nuclear 99.7 3.3E-14 7.1E-19 134.6 32.1 269 166-438 451-748 (1018)
27 KOG2003 TPR repeat-containing 99.7 2.3E-14 5.1E-19 124.6 27.9 399 16-421 217-709 (840)
28 KOG2076 RNA polymerase III tra 99.7 8.5E-14 1.8E-18 131.0 33.0 330 111-445 149-522 (895)
29 PF13429 TPR_15: Tetratricopep 99.7 4.1E-17 8.9E-22 144.1 9.8 256 172-433 13-275 (280)
30 KOG2002 TPR-containing nuclear 99.7 4.4E-13 9.5E-18 127.2 36.0 382 49-435 251-709 (1018)
31 KOG0495 HAT repeat protein [RN 99.7 7.9E-12 1.7E-16 113.8 39.4 429 8-450 414-893 (913)
32 PRK10747 putative protoheme IX 99.7 1.4E-13 3.1E-18 127.1 28.2 218 176-401 162-390 (398)
33 KOG0547 Translocase of outer m 99.7 6.8E-13 1.5E-17 116.6 28.9 354 69-433 118-564 (606)
34 PRK10747 putative protoheme IX 99.6 3.7E-13 8E-18 124.4 28.3 275 149-434 97-389 (398)
35 PF13429 TPR_15: Tetratricopep 99.6 3.5E-15 7.6E-20 131.8 13.1 257 71-331 13-276 (280)
36 KOG2003 TPR repeat-containing 99.6 7E-13 1.5E-17 115.6 26.0 185 250-438 503-692 (840)
37 KOG0495 HAT repeat protein [RN 99.6 6.5E-11 1.4E-15 108.0 39.2 401 20-436 366-783 (913)
38 TIGR00540 hemY_coli hemY prote 99.6 1.2E-12 2.6E-17 121.7 28.6 223 174-400 160-398 (409)
39 COG2956 Predicted N-acetylgluc 99.6 1.1E-12 2.3E-17 109.5 24.6 300 149-456 48-368 (389)
40 TIGR00540 hemY_coli hemY prote 99.6 5.8E-12 1.3E-16 117.2 32.3 278 147-432 95-396 (409)
41 KOG1126 DNA-binding cell divis 99.6 2.3E-13 4.9E-18 124.2 21.9 278 151-439 334-624 (638)
42 KOG1915 Cell cycle control pro 99.6 7E-11 1.5E-15 103.8 35.8 413 11-433 118-583 (677)
43 KOG4422 Uncharacterized conser 99.6 7.3E-12 1.6E-16 108.5 28.5 327 34-366 206-588 (625)
44 COG2956 Predicted N-acetylgluc 99.6 1E-11 2.2E-16 103.8 27.1 274 68-349 38-325 (389)
45 KOG1155 Anaphase-promoting com 99.6 4.2E-11 9E-16 105.0 31.8 285 108-401 234-536 (559)
46 COG3071 HemY Uncharacterized e 99.6 3.9E-11 8.4E-16 103.4 29.6 287 79-401 97-390 (400)
47 KOG1155 Anaphase-promoting com 99.6 7.2E-11 1.6E-15 103.5 31.4 255 176-434 236-494 (559)
48 KOG1126 DNA-binding cell divis 99.6 1.2E-12 2.6E-17 119.6 21.4 281 116-407 334-626 (638)
49 KOG1173 Anaphase-promoting com 99.5 1.1E-10 2.4E-15 104.9 32.6 415 14-436 30-519 (611)
50 COG3071 HemY Uncharacterized e 99.5 3.5E-11 7.7E-16 103.7 26.9 280 149-437 97-392 (400)
51 KOG2076 RNA polymerase III tra 99.5 1E-10 2.3E-15 110.6 32.1 356 75-434 148-554 (895)
52 KOG1915 Cell cycle control pro 99.5 5E-10 1.1E-14 98.6 32.6 380 49-438 88-503 (677)
53 KOG1840 Kinesin light chain [C 99.5 7.9E-11 1.7E-15 108.7 25.9 231 202-433 199-477 (508)
54 TIGR02521 type_IV_pilW type IV 99.5 4.5E-11 9.7E-16 102.9 23.1 198 236-435 30-232 (234)
55 PF13041 PPR_2: PPR repeat fam 99.4 7.6E-13 1.6E-17 82.3 5.2 50 64-113 1-50 (50)
56 KOG4318 Bicoid mRNA stability 99.4 1.4E-09 3E-14 102.9 28.7 214 21-252 11-286 (1088)
57 KOG1174 Anaphase-promoting com 99.4 6.9E-09 1.5E-13 90.0 30.5 268 132-406 228-505 (564)
58 KOG4318 Bicoid mRNA stability 99.4 2.1E-10 4.6E-15 108.2 22.7 84 266-353 202-285 (1088)
59 KOG0547 Translocase of outer m 99.4 3.7E-09 8E-14 93.6 28.5 345 49-403 130-568 (606)
60 TIGR02521 type_IV_pilW type IV 99.4 4.7E-10 1E-14 96.5 23.3 198 168-401 32-232 (234)
61 KOG4162 Predicted calmodulin-b 99.4 7.2E-09 1.6E-13 96.8 31.8 404 27-437 315-785 (799)
62 PRK12370 invasion protein regu 99.4 8.2E-10 1.8E-14 106.9 26.6 258 166-436 255-536 (553)
63 KOG1129 TPR repeat-containing 99.3 8.7E-11 1.9E-15 98.5 16.7 229 205-439 226-462 (478)
64 KOG1129 TPR repeat-containing 99.3 1E-10 2.2E-15 98.0 15.3 236 170-411 226-468 (478)
65 PF13041 PPR_2: PPR repeat fam 99.3 9.2E-12 2E-16 77.4 6.8 50 266-315 1-50 (50)
66 KOG1173 Anaphase-promoting com 99.3 6.2E-09 1.3E-13 93.9 25.4 269 71-347 249-530 (611)
67 PRK11189 lipoprotein NlpI; Pro 99.3 1E-09 2.2E-14 97.3 20.7 228 179-415 38-280 (296)
68 PRK12370 invasion protein regu 99.3 1.3E-09 2.8E-14 105.5 22.8 226 201-434 255-501 (553)
69 KOG1174 Anaphase-promoting com 99.2 9.1E-08 2E-12 83.3 30.0 266 165-438 230-503 (564)
70 COG3063 PilF Tfp pilus assembl 99.2 1.5E-09 3.3E-14 86.9 17.6 194 239-434 37-235 (250)
71 KOG1840 Kinesin light chain [C 99.2 1.5E-08 3.3E-13 93.8 26.7 200 172-400 246-478 (508)
72 PF12569 NARP1: NMDA receptor- 99.2 1.2E-07 2.6E-12 89.1 32.9 412 7-431 11-516 (517)
73 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-08 3.4E-13 89.8 25.0 192 238-437 65-267 (296)
74 COG3063 PilF Tfp pilus assembl 99.2 2.1E-08 4.5E-13 80.5 21.4 200 204-407 37-242 (250)
75 KOG2047 mRNA splicing factor [ 99.2 1.3E-06 2.8E-11 80.5 35.4 422 6-433 108-613 (835)
76 PF12569 NARP1: NMDA receptor- 99.1 9E-08 2E-12 89.9 26.7 283 144-434 12-333 (517)
77 PF04733 Coatomer_E: Coatomer 99.1 7E-09 1.5E-13 90.6 18.0 249 146-406 11-270 (290)
78 KOG1156 N-terminal acetyltrans 99.1 2.5E-06 5.5E-11 78.8 33.8 426 14-449 21-487 (700)
79 KOG2376 Signal recognition par 99.1 4.8E-06 1E-10 76.2 35.0 403 14-432 26-517 (652)
80 KOG2376 Signal recognition par 99.1 1.9E-06 4.1E-11 78.7 31.7 130 305-437 341-489 (652)
81 KOG1125 TPR repeat-containing 99.1 1.3E-08 2.9E-13 92.2 18.1 215 212-433 295-525 (579)
82 KOG1156 N-terminal acetyltrans 99.1 1.7E-06 3.6E-11 80.0 31.5 378 49-437 26-436 (700)
83 KOG2047 mRNA splicing factor [ 99.1 1.2E-05 2.6E-10 74.4 36.8 364 49-430 90-535 (835)
84 KOG3785 Uncharacterized conser 99.1 1.5E-06 3.2E-11 74.4 28.6 374 48-439 71-494 (557)
85 KOG0548 Molecular co-chaperone 99.1 2.9E-07 6.4E-12 83.0 25.6 371 47-438 15-458 (539)
86 KOG4162 Predicted calmodulin-b 99.1 2.4E-06 5.3E-11 80.5 32.2 398 2-406 325-788 (799)
87 KOG4340 Uncharacterized conser 99.0 2.9E-07 6.3E-12 76.8 22.4 374 49-434 25-442 (459)
88 cd05804 StaR_like StaR_like; a 99.0 1.6E-06 3.4E-11 79.9 29.7 194 241-435 118-336 (355)
89 cd05804 StaR_like StaR_like; a 99.0 3.9E-06 8.5E-11 77.3 30.8 197 66-264 6-213 (355)
90 KOG0624 dsRNA-activated protei 98.9 1.8E-06 3.9E-11 73.6 24.3 313 66-408 38-377 (504)
91 PRK04841 transcriptional regul 98.9 1.9E-06 4.1E-11 89.8 30.2 322 113-435 386-760 (903)
92 PF04733 Coatomer_E: Coatomer 98.9 7.9E-08 1.7E-12 84.0 16.9 217 141-366 40-263 (290)
93 KOG3616 Selective LIM binding 98.9 3.4E-06 7.4E-11 79.1 27.8 313 13-366 503-851 (1636)
94 PRK10370 formate-dependent nit 98.9 3.7E-07 8E-12 75.4 18.3 150 275-439 23-177 (198)
95 KOG3785 Uncharacterized conser 98.9 3.6E-06 7.8E-11 72.1 23.7 370 49-432 37-454 (557)
96 TIGR03302 OM_YfiO outer membra 98.9 7.7E-07 1.7E-11 76.6 20.3 182 236-436 32-233 (235)
97 KOG1070 rRNA processing protei 98.8 5.8E-07 1.3E-11 89.7 21.1 200 234-439 1455-1667(1710)
98 KOG4340 Uncharacterized conser 98.8 2.1E-06 4.5E-11 71.8 20.1 197 96-300 5-210 (459)
99 KOG0624 dsRNA-activated protei 98.8 1.6E-05 3.5E-10 68.0 25.4 295 47-366 51-368 (504)
100 KOG0548 Molecular co-chaperone 98.8 2.4E-05 5.1E-10 71.1 27.7 393 12-419 14-473 (539)
101 KOG1125 TPR repeat-containing 98.8 5.2E-07 1.1E-11 82.1 17.4 247 176-428 294-564 (579)
102 KOG0985 Vesicle coat protein c 98.8 9.1E-05 2E-09 72.3 32.6 381 9-432 929-1367(1666)
103 KOG3081 Vesicle coat complex C 98.7 2.8E-05 6.1E-10 64.3 24.0 250 146-406 18-276 (299)
104 KOG3617 WD40 and TPR repeat-co 98.7 3.7E-05 7.9E-10 73.3 27.8 354 33-432 724-1106(1416)
105 PRK15359 type III secretion sy 98.7 2.3E-07 5.1E-12 72.4 11.8 101 310-413 31-133 (144)
106 PRK04841 transcriptional regul 98.7 4.2E-05 9.1E-10 79.8 32.0 328 76-405 384-764 (903)
107 KOG1128 Uncharacterized conser 98.7 1.8E-05 4E-10 74.4 25.6 215 133-365 395-613 (777)
108 KOG3616 Selective LIM binding 98.7 6.4E-06 1.4E-10 77.3 21.5 167 209-395 739-905 (1636)
109 PRK15359 type III secretion sy 98.7 1.6E-06 3.5E-11 67.7 14.8 110 323-438 13-124 (144)
110 PLN02789 farnesyltranstransfer 98.7 1.9E-05 4.1E-10 70.2 23.1 126 169-297 39-171 (320)
111 KOG0985 Vesicle coat protein c 98.6 0.00031 6.8E-09 68.8 31.8 279 75-387 1057-1370(1666)
112 KOG1128 Uncharacterized conser 98.6 9.7E-06 2.1E-10 76.2 21.3 188 233-436 394-583 (777)
113 PF12854 PPR_1: PPR repeat 98.6 4.2E-08 9E-13 54.6 3.6 32 131-162 2-33 (34)
114 COG5010 TadD Flp pilus assembl 98.6 9E-06 2E-10 67.1 17.5 155 272-430 70-226 (257)
115 KOG3617 WD40 and TPR repeat-co 98.6 2.4E-05 5.2E-10 74.5 22.5 233 100-366 725-994 (1416)
116 PF12854 PPR_1: PPR repeat 98.6 1E-07 2.2E-12 53.0 4.3 32 334-365 2-33 (34)
117 PRK15179 Vi polysaccharide bio 98.6 7.3E-06 1.6E-10 80.3 20.0 159 267-436 85-246 (694)
118 COG5010 TadD Flp pilus assembl 98.5 1E-05 2.3E-10 66.8 16.4 128 307-437 70-199 (257)
119 PLN02789 farnesyltranstransfer 98.5 0.00016 3.4E-09 64.4 25.1 214 215-433 50-300 (320)
120 PRK14720 transcript cleavage f 98.5 3.6E-05 7.8E-10 76.4 22.6 236 101-382 31-268 (906)
121 PRK10370 formate-dependent nit 98.5 2.5E-05 5.5E-10 64.5 18.4 154 244-409 23-181 (198)
122 TIGR03302 OM_YfiO outer membra 98.5 1.5E-05 3.2E-10 68.6 17.8 65 166-232 32-100 (235)
123 KOG1127 TPR repeat-containing 98.5 1.7E-05 3.8E-10 77.0 19.3 375 49-431 473-909 (1238)
124 KOG1127 TPR repeat-containing 98.5 0.00011 2.3E-09 71.8 24.5 409 19-433 475-950 (1238)
125 TIGR02552 LcrH_SycD type III s 98.5 2.2E-06 4.7E-11 66.6 11.3 94 342-436 20-115 (135)
126 KOG3081 Vesicle coat complex C 98.5 5.3E-05 1.1E-09 62.7 19.2 243 176-435 17-271 (299)
127 KOG1070 rRNA processing protei 98.5 7.3E-05 1.6E-09 75.4 23.2 230 166-400 1457-1699(1710)
128 PRK14720 transcript cleavage f 98.5 0.00015 3.3E-09 72.1 25.4 236 64-350 29-268 (906)
129 COG4783 Putative Zn-dependent 98.5 0.00018 3.8E-09 65.0 23.4 205 8-220 210-426 (484)
130 COG4783 Putative Zn-dependent 98.5 0.00015 3.2E-09 65.5 22.8 123 305-431 309-433 (484)
131 KOG1914 mRNA cleavage and poly 98.4 0.0017 3.7E-08 59.5 31.6 364 32-403 17-503 (656)
132 PRK15363 pathogenicity island 98.4 6.6E-06 1.4E-10 63.2 10.7 97 339-436 35-133 (157)
133 KOG2053 Mitochondrial inherita 98.4 0.0028 6.1E-08 61.6 30.2 410 14-439 23-506 (932)
134 TIGR00756 PPR pentatricopeptid 98.4 8.3E-07 1.8E-11 50.2 4.3 35 67-101 1-35 (35)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.6E-05 5.5E-10 70.8 15.6 125 239-367 171-296 (395)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.5E-05 3.3E-10 72.3 14.1 124 305-434 171-296 (395)
137 PF13812 PPR_3: Pentatricopept 98.3 1E-06 2.3E-11 49.4 4.0 34 66-99 1-34 (34)
138 PRK15179 Vi polysaccharide bio 98.3 0.00049 1.1E-08 67.8 24.5 142 233-378 82-229 (694)
139 KOG1914 mRNA cleavage and poly 98.3 0.0022 4.8E-08 58.8 26.3 138 53-196 9-166 (656)
140 TIGR02552 LcrH_SycD type III s 98.3 3.4E-05 7.3E-10 59.8 13.1 113 290-407 5-120 (135)
141 KOG3060 Uncharacterized conser 98.3 0.0005 1.1E-08 56.7 19.6 127 280-410 98-229 (289)
142 KOG3060 Uncharacterized conser 98.3 0.0001 2.3E-09 60.6 15.6 186 248-438 23-223 (289)
143 cd00189 TPR Tetratricopeptide 98.2 2.2E-05 4.7E-10 56.4 9.6 95 341-436 2-98 (100)
144 TIGR00756 PPR pentatricopeptid 98.2 4.3E-06 9.4E-11 47.2 4.5 33 270-302 2-34 (35)
145 PF09976 TPR_21: Tetratricopep 98.1 0.00012 2.6E-09 57.4 13.4 114 316-431 24-143 (145)
146 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.6E-05 9.9E-10 57.5 10.6 94 342-436 5-106 (119)
147 COG4235 Cytochrome c biogenesi 98.1 5.5E-05 1.2E-09 64.3 11.6 111 336-446 153-267 (287)
148 PF13414 TPR_11: TPR repeat; P 98.1 9.1E-06 2E-10 54.4 5.5 66 370-436 2-68 (69)
149 PF13812 PPR_3: Pentatricopept 98.1 7.9E-06 1.7E-10 45.7 4.4 33 269-301 2-34 (34)
150 PF09976 TPR_21: Tetratricopep 98.1 0.00041 8.8E-09 54.4 15.3 124 272-398 16-144 (145)
151 PF12895 Apc3: Anaphase-promot 98.0 6.5E-06 1.4E-10 57.6 4.1 77 353-431 3-83 (84)
152 PF13432 TPR_16: Tetratricopep 98.0 1.1E-05 2.3E-10 53.3 4.8 60 377-437 3-62 (65)
153 PLN03088 SGT1, suppressor of 98.0 3.8E-05 8.3E-10 69.9 8.8 105 310-417 9-115 (356)
154 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00025 5.5E-09 53.4 11.8 103 305-408 4-112 (119)
155 PF01535 PPR: PPR repeat; Int 97.9 1.3E-05 2.8E-10 43.7 3.3 31 67-97 1-31 (31)
156 PF08579 RPM2: Mitochondrial r 97.9 9E-05 2E-09 52.8 8.1 79 70-148 29-116 (120)
157 KOG0550 Molecular chaperone (D 97.9 0.00044 9.6E-09 61.0 13.9 156 276-438 177-353 (486)
158 COG3898 Uncharacterized membra 97.9 0.014 3.1E-07 51.5 24.2 288 138-439 84-396 (531)
159 PRK10866 outer membrane biogen 97.9 0.0048 1E-07 52.8 20.0 174 243-434 38-240 (243)
160 KOG2053 Mitochondrial inherita 97.9 0.016 3.4E-07 56.7 24.9 227 112-365 20-252 (932)
161 KOG0550 Molecular chaperone (D 97.9 0.0091 2E-07 53.1 21.0 335 74-430 57-438 (486)
162 PF05843 Suf: Suppressor of fo 97.9 0.00081 1.8E-08 59.1 15.1 134 269-406 2-141 (280)
163 PF14938 SNAP: Soluble NSF att 97.8 0.0037 7.9E-08 55.2 19.1 191 174-366 42-264 (282)
164 PRK02603 photosystem I assembl 97.8 0.00038 8.2E-09 56.4 11.5 96 340-436 36-150 (172)
165 PF13371 TPR_9: Tetratricopept 97.8 8.1E-05 1.8E-09 50.4 6.4 60 378-438 2-61 (73)
166 PF01535 PPR: PPR repeat; Int 97.8 3.3E-05 7.2E-10 42.0 3.4 29 270-298 2-30 (31)
167 PF04840 Vps16_C: Vps16, C-ter 97.8 0.024 5.2E-07 50.5 27.5 109 241-366 181-289 (319)
168 PF14559 TPR_19: Tetratricopep 97.8 3.5E-05 7.6E-10 51.4 4.1 56 382-438 2-57 (68)
169 PF07079 DUF1347: Protein of u 97.8 0.028 6.1E-07 50.8 33.1 416 9-434 15-523 (549)
170 cd00189 TPR Tetratricopeptide 97.8 0.00037 8E-09 49.7 9.8 90 272-364 4-93 (100)
171 PLN03088 SGT1, suppressor of 97.8 0.00053 1.2E-08 62.5 12.6 99 274-375 8-107 (356)
172 PRK15331 chaperone protein Sic 97.7 0.00059 1.3E-08 52.9 10.5 87 347-434 45-133 (165)
173 KOG1538 Uncharacterized conser 97.7 0.0055 1.2E-07 57.5 18.2 94 64-162 554-658 (1081)
174 PF14938 SNAP: Soluble NSF att 97.7 0.0087 1.9E-07 52.9 19.4 144 274-433 100-264 (282)
175 PF08579 RPM2: Mitochondrial r 97.7 0.00072 1.6E-08 48.4 9.8 81 169-249 27-116 (120)
176 PF12895 Apc3: Anaphase-promot 97.7 0.00019 4.1E-09 50.1 7.0 80 281-364 2-83 (84)
177 PF10037 MRP-S27: Mitochondria 97.7 0.00041 8.8E-09 63.5 10.8 118 133-250 63-186 (429)
178 KOG0553 TPR repeat-containing 97.7 0.00016 3.4E-09 61.2 7.3 108 312-423 90-200 (304)
179 CHL00033 ycf3 photosystem I as 97.7 0.00061 1.3E-08 55.0 10.3 93 339-432 35-139 (168)
180 KOG2280 Vacuolar assembly/sort 97.6 0.065 1.4E-06 51.6 25.7 111 302-429 683-793 (829)
181 PRK02603 photosystem I assembl 97.6 0.002 4.3E-08 52.2 13.1 89 167-256 35-125 (172)
182 PRK10153 DNA-binding transcrip 97.6 0.0046 1E-07 59.1 17.0 66 340-406 421-487 (517)
183 KOG0553 TPR repeat-containing 97.6 0.0006 1.3E-08 57.8 9.7 101 275-379 88-190 (304)
184 PRK10153 DNA-binding transcrip 97.6 0.0027 5.8E-08 60.7 14.9 137 298-439 332-486 (517)
185 PF04840 Vps16_C: Vps16, C-ter 97.6 0.054 1.2E-06 48.4 24.2 107 305-429 179-285 (319)
186 COG4700 Uncharacterized protei 97.6 0.019 4.2E-07 45.3 16.4 99 199-297 86-189 (251)
187 PRK15363 pathogenicity island 97.5 0.004 8.8E-08 48.1 12.7 89 172-262 40-128 (157)
188 PF10037 MRP-S27: Mitochondria 97.5 0.0016 3.4E-08 59.7 12.3 118 198-315 62-185 (429)
189 PF13432 TPR_16: Tetratricopep 97.5 0.00024 5.1E-09 46.8 5.2 61 345-406 3-65 (65)
190 KOG1130 Predicted G-alpha GTPa 97.5 0.0011 2.5E-08 58.5 10.6 128 305-433 197-342 (639)
191 COG4700 Uncharacterized protei 97.5 0.023 4.9E-07 44.9 16.1 132 299-433 85-220 (251)
192 COG3898 Uncharacterized membra 97.5 0.065 1.4E-06 47.6 26.8 292 104-406 85-396 (531)
193 CHL00033 ycf3 photosystem I as 97.5 0.0038 8.3E-08 50.3 12.8 79 169-248 37-117 (168)
194 PRK10866 outer membrane biogen 97.5 0.055 1.2E-06 46.4 21.9 58 172-231 37-98 (243)
195 PRK10803 tol-pal system protei 97.5 0.00089 1.9E-08 57.8 9.4 86 350-436 154-247 (263)
196 PF12688 TPR_5: Tetratrico pep 97.5 0.0062 1.3E-07 45.3 12.5 103 174-276 8-114 (120)
197 PF05843 Suf: Suppressor of fo 97.4 0.0018 3.8E-08 57.0 11.1 129 304-435 2-136 (280)
198 KOG2041 WD40 repeat protein [G 97.4 0.12 2.7E-06 49.4 24.6 131 49-192 678-821 (1189)
199 PF13525 YfiO: Outer membrane 97.4 0.015 3.3E-07 48.5 16.0 166 243-426 11-198 (203)
200 PF06239 ECSIT: Evolutionarily 97.4 0.00061 1.3E-08 55.2 7.2 100 52-151 32-153 (228)
201 PF12688 TPR_5: Tetratrico pep 97.4 0.0069 1.5E-07 45.1 12.3 92 274-365 7-101 (120)
202 PF13281 DUF4071: Domain of un 97.4 0.071 1.5E-06 48.1 20.3 163 240-406 144-339 (374)
203 PF06239 ECSIT: Evolutionarily 97.3 0.0028 6.1E-08 51.5 9.8 97 156-252 34-153 (228)
204 PF13431 TPR_17: Tetratricopep 97.3 0.00016 3.5E-09 40.0 2.0 33 395-427 2-34 (34)
205 PF13414 TPR_11: TPR repeat; P 97.3 0.00063 1.4E-08 45.4 5.2 64 339-403 3-69 (69)
206 PF14559 TPR_19: Tetratricopep 97.2 0.0015 3.2E-08 43.4 6.4 59 315-375 3-62 (68)
207 KOG2796 Uncharacterized conser 97.2 0.12 2.5E-06 43.5 21.1 261 29-297 35-315 (366)
208 KOG2280 Vacuolar assembly/sort 97.1 0.31 6.7E-06 47.3 25.8 114 48-163 451-573 (829)
209 PF13525 YfiO: Outer membrane 97.1 0.13 2.8E-06 42.9 18.8 58 174-231 12-71 (203)
210 KOG1130 Predicted G-alpha GTPa 97.1 0.0056 1.2E-07 54.3 10.0 257 74-331 25-343 (639)
211 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0032 6.9E-08 57.3 8.7 62 339-401 75-141 (453)
212 PF13428 TPR_14: Tetratricopep 97.0 0.0013 2.8E-08 39.1 3.9 42 372-414 2-43 (44)
213 PF03704 BTAD: Bacterial trans 97.0 0.0022 4.7E-08 50.4 6.2 71 372-443 63-138 (146)
214 KOG2796 Uncharacterized conser 97.0 0.045 9.7E-07 45.9 13.6 136 269-406 178-320 (366)
215 PRK10803 tol-pal system protei 97.0 0.018 3.9E-07 49.8 12.1 101 305-406 145-251 (263)
216 COG4235 Cytochrome c biogenesi 96.9 0.07 1.5E-06 45.9 15.0 110 300-413 153-267 (287)
217 PF13371 TPR_9: Tetratricopept 96.9 0.0034 7.3E-08 42.3 5.9 62 347-409 3-66 (73)
218 PF12921 ATP13: Mitochondrial 96.9 0.017 3.6E-07 43.5 9.8 53 298-350 47-99 (126)
219 PF13424 TPR_12: Tetratricopep 96.9 0.0017 3.7E-08 44.5 4.1 61 372-433 6-73 (78)
220 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.39 8.5E-06 43.7 26.3 81 32-114 39-122 (660)
221 COG1729 Uncharacterized protei 96.8 0.0077 1.7E-07 50.9 8.0 58 377-435 184-244 (262)
222 PF13512 TPR_18: Tetratricopep 96.7 0.054 1.2E-06 41.2 11.2 91 346-437 17-130 (142)
223 KOG1538 Uncharacterized conser 96.7 0.097 2.1E-06 49.6 14.8 37 24-62 624-660 (1081)
224 COG3118 Thioredoxin domain-con 96.6 0.15 3.3E-06 43.8 14.5 119 313-435 144-265 (304)
225 KOG0543 FKBP-type peptidyl-pro 96.6 0.027 5.8E-07 50.3 10.4 137 275-434 215-354 (397)
226 KOG0543 FKBP-type peptidyl-pro 96.4 0.014 3.1E-07 52.0 7.8 68 371-439 257-324 (397)
227 PF07079 DUF1347: Protein of u 96.4 0.71 1.5E-05 42.2 26.9 98 15-113 60-179 (549)
228 PF09205 DUF1955: Domain of un 96.4 0.21 4.6E-06 37.2 12.3 138 76-234 12-152 (161)
229 PRK11906 transcriptional regul 96.4 0.078 1.7E-06 48.7 12.3 143 284-430 274-431 (458)
230 KOG2041 WD40 repeat protein [G 96.4 1 2.2E-05 43.6 19.4 90 132-230 848-951 (1189)
231 PF04053 Coatomer_WDAD: Coatom 96.3 0.15 3.3E-06 47.8 14.3 157 75-263 270-428 (443)
232 PF13424 TPR_12: Tetratricopep 96.3 0.0086 1.9E-07 40.9 4.7 59 341-400 7-74 (78)
233 PF10300 DUF3808: Protein of u 96.2 0.39 8.4E-06 45.8 16.8 161 270-434 190-375 (468)
234 PRK15331 chaperone protein Sic 96.1 0.21 4.5E-06 39.2 11.7 84 280-366 49-132 (165)
235 COG1729 Uncharacterized protei 96.1 0.18 3.9E-06 42.8 12.1 100 305-408 144-251 (262)
236 PRK11619 lytic murein transgly 96.1 1.8 3.9E-05 43.1 28.7 74 142-217 105-178 (644)
237 PF03704 BTAD: Bacterial trans 95.9 0.094 2E-06 41.0 9.5 68 171-239 66-138 (146)
238 PF13281 DUF4071: Domain of un 95.9 1.4 2.9E-05 40.1 18.0 72 141-212 146-227 (374)
239 COG4785 NlpI Lipoprotein NlpI, 95.8 0.8 1.7E-05 37.5 14.0 161 268-436 99-267 (297)
240 KOG3941 Intermediate in Toll s 95.8 0.052 1.1E-06 46.0 7.8 101 51-151 51-173 (406)
241 KOG1941 Acetylcholine receptor 95.8 0.33 7.1E-06 42.9 12.7 43 179-221 18-62 (518)
242 KOG1585 Protein required for f 95.8 0.96 2.1E-05 37.8 15.9 54 374-429 193-250 (308)
243 KOG1585 Protein required for f 95.8 0.93 2E-05 37.9 14.4 91 272-363 154-251 (308)
244 COG4105 ComL DNA uptake lipopr 95.7 1.1 2.4E-05 37.9 17.8 57 377-434 173-232 (254)
245 KOG0890 Protein kinase of the 95.7 3.7 8.1E-05 45.9 22.2 315 106-438 1388-1734(2382)
246 PF09205 DUF1955: Domain of un 95.5 0.73 1.6E-05 34.4 13.8 141 278-438 12-152 (161)
247 COG5107 RNA14 Pre-mRNA 3'-end 95.4 2.2 4.7E-05 39.2 26.3 369 55-433 30-529 (660)
248 PF13512 TPR_18: Tetratricopep 95.3 0.93 2E-05 34.7 12.3 18 389-406 116-133 (142)
249 PF12921 ATP13: Mitochondrial 95.3 0.31 6.8E-06 36.7 9.8 49 198-246 48-97 (126)
250 KOG3941 Intermediate in Toll s 95.3 0.22 4.7E-06 42.4 9.5 111 154-264 52-186 (406)
251 PF04053 Coatomer_WDAD: Coatom 95.2 0.87 1.9E-05 42.9 14.4 158 176-366 270-429 (443)
252 COG3118 Thioredoxin domain-con 95.2 1.9 4.1E-05 37.3 15.7 146 276-424 142-290 (304)
253 PF02259 FAT: FAT domain; Int 95.1 2.4 5.2E-05 38.8 17.3 66 369-435 144-213 (352)
254 smart00299 CLH Clathrin heavy 95.1 1.2 2.6E-05 34.5 14.3 126 271-417 10-136 (140)
255 PF13428 TPR_14: Tetratricopep 95.0 0.047 1E-06 32.3 3.7 34 406-439 1-34 (44)
256 PF07719 TPR_2: Tetratricopept 95.0 0.091 2E-06 28.7 4.7 31 373-404 3-33 (34)
257 KOG2114 Vacuolar assembly/sort 94.9 4.5 9.7E-05 40.3 18.7 175 139-329 337-516 (933)
258 KOG2610 Uncharacterized conser 94.9 1 2.3E-05 39.5 12.8 155 248-406 114-283 (491)
259 PLN03098 LPA1 LOW PSII ACCUMUL 94.9 0.43 9.3E-06 44.0 11.1 64 166-231 74-141 (453)
260 COG0457 NrfG FOG: TPR repeat [ 94.8 2.1 4.5E-05 36.1 26.5 199 203-404 60-268 (291)
261 PF10300 DUF3808: Protein of u 94.7 3.9 8.3E-05 39.2 17.7 158 170-330 191-374 (468)
262 PF13170 DUF4003: Protein of u 94.6 3.1 6.7E-05 36.9 17.0 68 184-251 160-231 (297)
263 smart00299 CLH Clathrin heavy 94.6 1.6 3.6E-05 33.7 15.5 90 66-163 7-96 (140)
264 PF02259 FAT: FAT domain; Int 94.5 3.7 8E-05 37.6 19.2 148 267-418 145-304 (352)
265 KOG4555 TPR repeat-containing 94.5 0.38 8.2E-06 35.8 8.0 103 312-417 52-160 (175)
266 PF13170 DUF4003: Protein of u 94.5 1.1 2.4E-05 39.6 12.5 138 5-144 62-225 (297)
267 PF00515 TPR_1: Tetratricopept 94.5 0.099 2.1E-06 28.7 4.0 31 373-404 3-33 (34)
268 KOG2610 Uncharacterized conser 94.4 0.5 1.1E-05 41.3 9.8 159 279-441 114-282 (491)
269 PF04184 ST7: ST7 protein; In 94.3 4.2 9.2E-05 38.1 15.9 58 308-365 264-321 (539)
270 COG4105 ComL DNA uptake lipopr 94.2 3.2 6.8E-05 35.3 20.5 169 235-406 33-238 (254)
271 COG3629 DnrI DNA-binding trans 94.1 0.28 6.1E-06 42.4 7.8 59 341-400 155-215 (280)
272 COG0457 NrfG FOG: TPR repeat [ 94.1 3.1 6.8E-05 34.9 25.6 196 237-435 59-265 (291)
273 PF04184 ST7: ST7 protein; In 94.0 2.6 5.5E-05 39.4 13.9 56 344-400 264-323 (539)
274 PRK11906 transcriptional regul 93.9 4.9 0.00011 37.5 15.6 139 253-397 274-432 (458)
275 PF13176 TPR_7: Tetratricopept 93.9 0.12 2.6E-06 28.9 3.6 26 408-433 1-26 (36)
276 PF10602 RPN7: 26S proteasome 93.8 2.3 5E-05 34.4 12.1 95 270-366 38-140 (177)
277 KOG1586 Protein required for f 93.7 3.4 7.4E-05 34.5 12.7 24 382-406 165-188 (288)
278 KOG2114 Vacuolar assembly/sort 93.7 8.3 0.00018 38.6 22.5 133 49-193 383-516 (933)
279 KOG1920 IkappaB kinase complex 93.6 11 0.00024 39.4 20.4 53 310-366 972-1026(1265)
280 PF09613 HrpB1_HrpK: Bacterial 93.5 0.67 1.4E-05 36.2 8.2 81 340-423 8-95 (160)
281 KOG1258 mRNA processing protei 93.5 7.3 0.00016 37.3 25.8 82 113-195 91-179 (577)
282 COG4649 Uncharacterized protei 93.5 1.7 3.7E-05 34.3 10.1 51 349-400 142-195 (221)
283 KOG4234 TPR repeat-containing 93.4 0.32 7E-06 39.2 6.4 103 312-415 104-211 (271)
284 TIGR02561 HrpB1_HrpK type III 93.4 0.76 1.6E-05 35.3 8.0 69 351-422 22-94 (153)
285 KOG4555 TPR repeat-containing 93.3 0.85 1.8E-05 34.0 7.9 90 275-365 50-141 (175)
286 PF08631 SPO22: Meiosis protei 93.1 5.8 0.00012 35.0 25.2 23 242-264 126-148 (278)
287 PF00637 Clathrin: Region in C 93.0 0.22 4.8E-06 38.7 5.1 128 72-217 13-140 (143)
288 KOG1258 mRNA processing protei 92.9 9.2 0.0002 36.7 29.4 181 234-420 294-489 (577)
289 COG4649 Uncharacterized protei 92.8 2.1 4.6E-05 33.8 9.7 49 248-296 143-195 (221)
290 PF07719 TPR_2: Tetratricopept 92.7 0.13 2.9E-06 28.1 2.6 31 407-437 2-32 (34)
291 KOG1941 Acetylcholine receptor 92.6 3.2 7E-05 37.0 11.7 219 147-365 17-272 (518)
292 PF09613 HrpB1_HrpK: Bacterial 92.5 4.2 9.1E-05 31.9 12.7 109 313-427 20-130 (160)
293 COG2976 Uncharacterized protei 92.4 4.6 0.0001 32.7 11.5 131 269-403 55-190 (207)
294 PF00515 TPR_1: Tetratricopept 92.4 0.16 3.5E-06 27.8 2.6 31 407-437 2-32 (34)
295 PF07035 Mic1: Colon cancer-as 92.2 4.9 0.00011 31.9 13.1 135 187-331 14-148 (167)
296 PF13176 TPR_7: Tetratricopept 92.2 0.41 8.8E-06 26.7 4.1 24 271-294 2-25 (36)
297 PF13181 TPR_8: Tetratricopept 91.9 0.4 8.7E-06 26.1 3.9 29 374-403 4-32 (34)
298 COG3629 DnrI DNA-binding trans 91.8 1.6 3.5E-05 37.9 9.1 76 237-312 153-236 (280)
299 PF13174 TPR_6: Tetratricopept 91.8 0.18 4E-06 27.2 2.4 28 409-436 3-30 (33)
300 PF07721 TPR_4: Tetratricopept 91.7 0.27 5.8E-06 25.0 2.7 24 407-430 2-25 (26)
301 KOG1920 IkappaB kinase complex 91.6 20 0.00043 37.7 19.9 107 243-366 945-1053(1265)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 91.6 1.6 3.5E-05 30.6 7.1 63 283-347 22-84 (103)
303 PRK09687 putative lyase; Provi 91.3 9.9 0.00021 33.5 25.0 17 302-318 205-221 (280)
304 COG4785 NlpI Lipoprotein NlpI, 91.0 7.9 0.00017 32.0 15.0 179 215-402 78-267 (297)
305 PF10602 RPN7: 26S proteasome 90.9 3.1 6.7E-05 33.7 9.6 61 169-229 38-100 (177)
306 PRK15180 Vi polysaccharide bio 90.9 4.7 0.0001 37.4 11.4 119 315-436 301-421 (831)
307 PF13929 mRNA_stabil: mRNA sta 90.7 11 0.00023 32.9 13.1 58 133-190 199-261 (292)
308 PF02284 COX5A: Cytochrome c o 90.6 1.5 3.2E-05 31.1 6.2 62 285-348 27-88 (108)
309 PRK11619 lytic murein transgly 90.6 20 0.00044 35.9 35.6 333 49-397 81-464 (644)
310 COG2976 Uncharacterized protei 90.2 8.9 0.00019 31.2 13.3 89 346-436 96-189 (207)
311 KOG4570 Uncharacterized conser 90.1 6.3 0.00014 34.6 10.8 102 130-232 58-165 (418)
312 KOG4648 Uncharacterized conser 90.1 1 2.2E-05 39.7 6.2 90 313-406 107-199 (536)
313 PF00637 Clathrin: Region in C 90.0 0.28 6.1E-06 38.2 2.8 86 106-194 12-97 (143)
314 PF13431 TPR_17: Tetratricopep 90.0 0.62 1.3E-05 25.6 3.3 24 234-257 10-33 (34)
315 KOG1550 Extracellular protein 89.8 22 0.00047 35.1 21.1 274 152-436 228-539 (552)
316 TIGR02561 HrpB1_HrpK type III 89.7 8 0.00017 29.9 11.5 49 315-368 22-73 (153)
317 PF13181 TPR_8: Tetratricopept 89.6 0.67 1.5E-05 25.2 3.4 30 407-436 2-31 (34)
318 PRK12798 chemotaxis protein; R 89.6 17 0.00037 33.5 21.4 182 250-435 125-324 (421)
319 KOG0276 Vesicle coat complex C 89.2 11 0.00024 36.3 12.4 148 249-431 598-746 (794)
320 PF13374 TPR_10: Tetratricopep 89.1 0.75 1.6E-05 26.4 3.6 28 407-434 3-30 (42)
321 PF13174 TPR_6: Tetratricopept 88.7 1.1 2.4E-05 24.0 3.8 30 375-405 4-33 (33)
322 TIGR03504 FimV_Cterm FimV C-te 88.6 0.92 2E-05 26.7 3.5 27 410-436 3-29 (44)
323 PF07035 Mic1: Colon cancer-as 87.5 13 0.00028 29.6 15.3 43 121-163 14-56 (167)
324 PRK10941 hypothetical protein; 87.4 3.6 7.9E-05 35.8 8.0 61 375-436 185-245 (269)
325 PF08631 SPO22: Meiosis protei 87.1 20 0.00044 31.5 25.4 18 178-195 4-21 (278)
326 PF14561 TPR_20: Tetratricopep 87.0 2.2 4.7E-05 29.9 5.3 44 393-436 9-52 (90)
327 KOG4648 Uncharacterized conser 86.8 1.5 3.2E-05 38.7 5.2 89 346-435 104-194 (536)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 86.4 6.1 0.00013 27.8 6.9 45 185-229 25-69 (103)
329 KOG0276 Vesicle coat complex C 85.8 17 0.00037 35.1 11.6 99 46-162 649-747 (794)
330 PF04097 Nic96: Nup93/Nic96; 85.5 42 0.00092 33.6 21.1 49 65-114 110-158 (613)
331 COG3947 Response regulator con 85.3 25 0.00053 30.7 14.0 60 373-433 281-340 (361)
332 KOG2066 Vacuolar assembly/sort 84.9 45 0.00098 33.5 24.4 139 49-195 371-533 (846)
333 KOG4570 Uncharacterized conser 84.7 13 0.00028 32.7 9.6 100 232-332 59-164 (418)
334 PF02284 COX5A: Cytochrome c o 84.6 7.2 0.00016 27.8 6.7 47 185-231 28-74 (108)
335 PF11207 DUF2989: Protein of u 84.6 10 0.00022 31.1 8.6 72 184-256 123-197 (203)
336 KOG1464 COP9 signalosome, subu 84.5 25 0.00055 30.2 18.7 158 171-329 69-257 (440)
337 smart00028 TPR Tetratricopepti 84.4 1.9 4.2E-05 22.2 3.5 28 408-435 3-30 (34)
338 KOG1308 Hsp70-interacting prot 84.4 0.76 1.6E-05 40.4 2.4 88 351-439 126-215 (377)
339 PF13374 TPR_10: Tetratricopep 84.1 2.7 5.9E-05 23.9 4.1 27 270-296 4-30 (42)
340 KOG0890 Protein kinase of the 83.8 90 0.002 36.0 23.8 308 71-401 1388-1731(2382)
341 TIGR02508 type_III_yscG type I 83.7 13 0.00029 26.4 9.6 86 218-307 21-106 (115)
342 KOG0545 Aryl-hydrocarbon recep 83.7 12 0.00026 31.7 8.7 58 378-436 237-294 (329)
343 PRK15180 Vi polysaccharide bio 83.4 12 0.00025 35.1 9.3 122 279-405 300-424 (831)
344 TIGR02508 type_III_yscG type I 83.3 14 0.0003 26.3 8.5 86 117-206 21-106 (115)
345 PRK09687 putative lyase; Provi 83.3 32 0.00069 30.4 27.3 125 266-403 140-265 (280)
346 PF10345 Cohesin_load: Cohesin 83.1 54 0.0012 32.9 29.9 185 248-434 372-605 (608)
347 smart00028 TPR Tetratricopepti 83.0 2.6 5.7E-05 21.6 3.6 31 373-404 3-33 (34)
348 PF11207 DUF2989: Protein of u 83.0 14 0.00031 30.3 8.8 73 285-358 123-197 (203)
349 COG4455 ImpE Protein of avirul 82.9 6.5 0.00014 32.5 6.8 72 342-414 4-80 (273)
350 PF10579 Rapsyn_N: Rapsyn N-te 82.9 4.7 0.0001 27.1 5.0 47 315-361 18-65 (80)
351 KOG1586 Protein required for f 82.9 28 0.0006 29.4 14.3 59 349-408 164-231 (288)
352 KOG2066 Vacuolar assembly/sort 81.9 60 0.0013 32.7 21.6 152 109-268 364-536 (846)
353 PF04097 Nic96: Nup93/Nic96; 81.6 25 0.00053 35.2 11.9 62 141-202 116-187 (613)
354 PF04910 Tcf25: Transcriptiona 81.6 44 0.00095 30.8 13.3 64 370-434 99-167 (360)
355 PF14853 Fis1_TPR_C: Fis1 C-te 80.5 6.8 0.00015 24.2 4.9 32 376-408 6-37 (53)
356 PF07163 Pex26: Pex26 protein; 79.9 25 0.00055 30.5 9.5 83 244-326 90-181 (309)
357 COG1747 Uncharacterized N-term 79.4 60 0.0013 31.0 21.9 159 201-366 65-232 (711)
358 COG2909 MalT ATP-dependent tra 79.2 81 0.0017 32.4 26.1 215 213-431 426-684 (894)
359 cd08819 CARD_MDA5_2 Caspase ac 78.7 19 0.00041 24.9 7.0 64 222-287 22-85 (88)
360 KOG4234 TPR repeat-containing 78.7 33 0.0007 28.2 9.3 94 275-372 102-202 (271)
361 KOG4642 Chaperone-dependent E3 78.3 5.6 0.00012 33.4 5.2 84 313-400 20-106 (284)
362 KOG4077 Cytochrome c oxidase, 78.2 17 0.00038 27.1 7.0 59 286-346 67-125 (149)
363 COG4455 ImpE Protein of avirul 76.3 18 0.0004 30.0 7.4 128 270-406 3-139 (273)
364 TIGR03504 FimV_Cterm FimV C-te 75.9 7.5 0.00016 22.9 3.9 24 274-297 5-28 (44)
365 PRK13800 putative oxidoreducta 75.8 1.1E+02 0.0025 32.4 26.0 257 155-434 623-880 (897)
366 COG5159 RPN6 26S proteasome re 75.6 27 0.00058 30.4 8.5 51 274-324 9-66 (421)
367 KOG2396 HAT (Half-A-TPR) repea 74.6 81 0.0018 30.1 20.4 101 300-404 456-563 (568)
368 PF14669 Asp_Glu_race_2: Putat 74.1 47 0.001 27.1 11.8 55 207-261 137-205 (233)
369 PF06552 TOM20_plant: Plant sp 73.9 46 0.00099 26.9 10.1 41 389-436 97-137 (186)
370 PRK13800 putative oxidoreducta 73.8 1.3E+02 0.0028 32.0 24.4 248 133-400 632-880 (897)
371 PF09477 Type_III_YscG: Bacter 73.3 32 0.0007 24.9 9.3 79 217-298 21-99 (116)
372 PF10579 Rapsyn_N: Rapsyn N-te 72.9 14 0.0003 25.0 5.0 46 280-325 18-65 (80)
373 PF04910 Tcf25: Transcriptiona 72.9 79 0.0017 29.2 15.5 65 166-230 99-167 (360)
374 PF13929 mRNA_stabil: mRNA sta 72.9 66 0.0014 28.3 15.7 66 299-364 198-263 (292)
375 KOG1550 Extracellular protein 72.8 1E+02 0.0022 30.5 20.0 47 82-129 228-277 (552)
376 smart00386 HAT HAT (Half-A-TPR 72.4 8.3 0.00018 20.1 3.5 29 385-414 1-29 (33)
377 PRK10941 hypothetical protein; 72.4 21 0.00045 31.2 7.5 65 343-408 185-251 (269)
378 PF09986 DUF2225: Uncharacteri 71.3 32 0.00069 28.9 8.2 32 407-438 166-197 (214)
379 PRK13342 recombination factor 71.3 94 0.002 29.4 14.0 32 180-211 243-274 (413)
380 PF06552 TOM20_plant: Plant sp 71.2 36 0.00079 27.4 7.8 60 286-350 53-124 (186)
381 PF07575 Nucleopor_Nup85: Nup8 71.0 55 0.0012 32.4 11.1 60 201-262 404-463 (566)
382 KOG0686 COP9 signalosome, subu 71.0 88 0.0019 28.9 14.9 92 169-262 152-254 (466)
383 PF13762 MNE1: Mitochondrial s 70.7 48 0.001 25.7 10.2 77 139-215 42-128 (145)
384 PF10345 Cohesin_load: Cohesin 70.0 1.3E+02 0.0027 30.3 29.6 163 67-230 60-253 (608)
385 PF07163 Pex26: Pex26 protein; 69.9 51 0.0011 28.7 8.9 87 174-260 90-181 (309)
386 PF11846 DUF3366: Domain of un 69.7 22 0.00048 29.2 7.0 35 368-403 141-175 (193)
387 PF11848 DUF3368: Domain of un 68.0 16 0.00035 21.9 4.2 32 11-42 13-44 (48)
388 cd00280 TRFH Telomeric Repeat 67.6 47 0.001 26.9 7.7 68 319-386 85-158 (200)
389 PF14853 Fis1_TPR_C: Fis1 C-te 67.5 9.5 0.00021 23.5 3.2 31 408-438 3-33 (53)
390 cd08819 CARD_MDA5_2 Caspase ac 67.3 32 0.00069 23.8 5.9 38 148-186 48-85 (88)
391 KOG4077 Cytochrome c oxidase, 66.9 48 0.001 24.9 7.1 46 186-231 68-113 (149)
392 KOG4567 GTPase-activating prot 66.4 85 0.0018 27.8 9.6 43 121-163 263-305 (370)
393 PF12862 Apc5: Anaphase-promot 65.6 25 0.00054 24.8 5.6 53 381-434 8-69 (94)
394 PF09477 Type_III_YscG: Bacter 65.1 51 0.0011 23.9 8.2 79 116-197 21-99 (116)
395 COG4003 Uncharacterized protei 64.9 18 0.00038 24.4 4.2 38 3-41 34-71 (98)
396 COG4976 Predicted methyltransf 64.1 16 0.00035 30.6 4.8 56 350-406 6-63 (287)
397 KOG4507 Uncharacterized conser 64.1 24 0.00053 34.0 6.5 66 345-411 648-715 (886)
398 KOG2063 Vacuolar assembly/sort 63.5 1.2E+02 0.0026 31.6 11.6 27 239-265 506-532 (877)
399 COG0735 Fur Fe2+/Zn2+ uptake r 63.0 47 0.001 25.8 7.1 63 88-151 8-70 (145)
400 PF11846 DUF3366: Domain of un 62.2 32 0.00069 28.3 6.5 53 314-366 119-171 (193)
401 KOG2422 Uncharacterized conser 62.1 1.6E+02 0.0035 28.7 12.1 51 381-432 352-404 (665)
402 PF11848 DUF3368: Domain of un 62.0 28 0.0006 20.9 4.5 33 77-109 13-45 (48)
403 PF11663 Toxin_YhaV: Toxin wit 61.7 13 0.00029 28.1 3.6 33 77-111 106-138 (140)
404 KOG4279 Serine/threonine prote 61.5 1.9E+02 0.0041 29.4 13.9 182 221-406 182-400 (1226)
405 PRK10564 maltose regulon perip 60.2 13 0.00029 32.5 3.9 41 64-104 254-295 (303)
406 PF12968 DUF3856: Domain of Un 59.1 73 0.0016 23.8 7.4 60 371-431 55-125 (144)
407 PRK13342 recombination factor 59.0 1.6E+02 0.0035 27.8 15.2 46 272-317 231-279 (413)
408 COG1747 Uncharacterized N-term 57.9 1.8E+02 0.004 28.0 22.6 177 234-418 63-251 (711)
409 PF14689 SPOB_a: Sensor_kinase 57.8 40 0.00087 21.6 5.0 19 243-261 29-47 (62)
410 PF14863 Alkyl_sulf_dimr: Alky 57.4 50 0.0011 25.6 6.2 63 355-421 57-119 (141)
411 PF04762 IKI3: IKI3 family; I 56.8 2.6E+02 0.0056 29.9 13.1 114 237-365 812-927 (928)
412 KOG4567 GTPase-activating prot 56.7 1.5E+02 0.0032 26.5 10.2 73 288-366 263-345 (370)
413 KOG3364 Membrane protein invol 56.6 78 0.0017 24.2 6.8 70 336-406 29-105 (149)
414 PF10366 Vps39_1: Vacuolar sor 56.1 77 0.0017 23.1 7.9 27 270-296 41-67 (108)
415 KOG4507 Uncharacterized conser 56.1 52 0.0011 32.0 7.1 134 300-437 568-707 (886)
416 PF04190 DUF410: Protein of un 55.4 1.4E+02 0.0031 26.0 18.9 124 194-332 41-170 (260)
417 PF15469 Sec5: Exocyst complex 54.6 83 0.0018 25.5 7.7 138 282-446 40-179 (182)
418 KOG0376 Serine-threonine phosp 54.6 11 0.00023 35.3 2.5 98 310-411 11-111 (476)
419 KOG3364 Membrane protein invol 54.3 97 0.0021 23.8 8.5 66 300-365 29-97 (149)
420 cd08326 CARD_CASP9 Caspase act 54.3 70 0.0015 22.1 6.0 37 249-285 42-78 (84)
421 KOG3824 Huntingtin interacting 53.9 27 0.00058 30.7 4.7 59 350-409 127-187 (472)
422 KOG4814 Uncharacterized conser 53.8 1.6E+02 0.0034 29.3 9.9 86 349-435 364-457 (872)
423 PF11838 ERAP1_C: ERAP1-like C 53.5 1.7E+02 0.0037 26.3 18.1 81 319-400 146-229 (324)
424 PF10255 Paf67: RNA polymerase 53.2 94 0.002 29.1 8.3 55 377-432 128-190 (404)
425 PF09670 Cas_Cas02710: CRISPR- 52.6 2E+02 0.0043 26.8 12.5 16 249-264 143-158 (379)
426 PF09868 DUF2095: Uncharacteri 52.6 20 0.00044 26.0 3.1 38 4-42 65-102 (128)
427 TIGR01503 MthylAspMut_E methyl 52.4 1.2E+02 0.0026 28.7 8.7 77 49-131 29-116 (480)
428 KOG4521 Nuclear pore complex, 52.1 3.4E+02 0.0073 29.3 17.1 111 242-356 925-1071(1480)
429 PF10366 Vps39_1: Vacuolar sor 52.0 92 0.002 22.8 7.9 27 169-195 41-67 (108)
430 KOG0551 Hsp90 co-chaperone CNS 51.7 88 0.0019 28.1 7.4 91 341-432 83-179 (390)
431 PRK11639 zinc uptake transcrip 51.1 84 0.0018 25.2 7.0 59 93-152 18-76 (169)
432 PF13762 MNE1: Mitochondrial s 50.9 1.2E+02 0.0025 23.7 11.2 76 241-316 43-128 (145)
433 COG2912 Uncharacterized conser 50.7 70 0.0015 27.8 6.6 56 379-435 189-244 (269)
434 PHA02875 ankyrin repeat protei 50.6 2.2E+02 0.0048 26.8 16.0 197 90-303 19-230 (413)
435 KOG3807 Predicted membrane pro 49.3 2E+02 0.0043 25.9 14.5 51 312-362 284-334 (556)
436 PHA02875 ankyrin repeat protei 49.2 2.3E+02 0.005 26.6 13.6 198 21-236 16-229 (413)
437 COG0735 Fur Fe2+/Zn2+ uptake r 48.4 1.2E+02 0.0026 23.6 7.2 41 211-251 29-69 (145)
438 smart00777 Mad3_BUB1_I Mad3/BU 48.3 1.2E+02 0.0025 22.9 7.6 40 391-430 82-123 (125)
439 PF14689 SPOB_a: Sensor_kinase 47.8 47 0.001 21.2 4.1 21 309-329 29-49 (62)
440 COG0790 FOG: TPR repeat, SEL1 47.1 2E+02 0.0044 25.3 19.3 84 214-300 53-145 (292)
441 PRK10564 maltose regulon perip 46.7 45 0.00098 29.4 5.0 39 270-308 259-297 (303)
442 PF08424 NRDE-2: NRDE-2, neces 46.5 2.3E+02 0.0049 25.7 15.0 132 267-402 18-184 (321)
443 PF11663 Toxin_YhaV: Toxin wit 46.1 28 0.0006 26.4 3.1 33 279-313 106-138 (140)
444 PF11817 Foie-gras_1: Foie gra 45.9 84 0.0018 27.1 6.7 16 74-89 18-33 (247)
445 cd08326 CARD_CASP9 Caspase act 45.6 79 0.0017 21.8 5.2 62 20-85 19-80 (84)
446 KOG4642 Chaperone-dependent E3 45.5 2E+02 0.0043 24.7 9.8 113 277-395 19-140 (284)
447 PF11768 DUF3312: Protein of u 45.4 3E+02 0.0066 26.8 11.9 55 242-296 413-472 (545)
448 COG5191 Uncharacterized conser 45.3 54 0.0012 29.0 5.1 78 335-413 103-183 (435)
449 PF10255 Paf67: RNA polymerase 44.7 1.4E+02 0.003 28.0 8.1 56 240-295 125-191 (404)
450 COG5108 RPO41 Mitochondrial DN 44.6 1.4E+02 0.0031 29.7 8.2 47 273-319 33-81 (1117)
451 KOG0376 Serine-threonine phosp 44.3 43 0.00094 31.5 4.8 103 275-382 11-116 (476)
452 KOG3636 Uncharacterized conser 44.3 2.6E+02 0.0056 26.3 9.3 86 295-382 175-271 (669)
453 KOG1464 COP9 signalosome, subu 44.2 2.2E+02 0.0047 24.9 19.7 270 64-341 24-339 (440)
454 COG4976 Predicted methyltransf 43.3 38 0.00082 28.5 3.8 51 313-366 5-56 (287)
455 KOG2396 HAT (Half-A-TPR) repea 43.2 3.1E+02 0.0068 26.4 30.5 236 186-431 301-555 (568)
456 KOG1498 26S proteasome regulat 42.8 2.8E+02 0.0061 25.7 15.9 87 273-366 136-239 (439)
457 cd08332 CARD_CASP2 Caspase act 42.3 1E+02 0.0022 21.6 5.4 59 19-81 22-80 (90)
458 PF09986 DUF2225: Uncharacteri 42.1 2.1E+02 0.0045 24.1 9.5 21 345-365 171-191 (214)
459 PF12926 MOZART2: Mitotic-spin 41.5 1.2E+02 0.0026 21.1 6.4 42 87-128 29-70 (88)
460 COG3947 Response regulator con 41.4 2.6E+02 0.0056 24.9 13.6 67 239-305 281-355 (361)
461 PF08311 Mad3_BUB1_I: Mad3/BUB 41.1 1.6E+02 0.0034 22.3 8.4 43 286-328 81-124 (126)
462 KOG2297 Predicted translation 41.1 2.6E+02 0.0057 24.9 12.6 216 4-230 133-399 (412)
463 KOG1524 WD40 repeat-containing 41.1 1.8E+02 0.0038 28.1 8.0 55 304-365 574-628 (737)
464 PRK11639 zinc uptake transcrip 41.0 1.4E+02 0.0031 23.9 6.8 37 216-252 39-75 (169)
465 PF02847 MA3: MA3 domain; Int 41.0 94 0.002 22.6 5.5 20 174-193 9-28 (113)
466 PRK14956 DNA polymerase III su 41.0 2.7E+02 0.0057 27.0 9.4 111 6-137 165-284 (484)
467 PF06957 COPI_C: Coatomer (COP 40.8 1.7E+02 0.0037 27.6 8.0 47 372-433 301-347 (422)
468 COG5108 RPO41 Mitochondrial DN 40.8 2.2E+02 0.0048 28.4 8.8 74 106-179 33-115 (1117)
469 PF13934 ELYS: Nuclear pore co 40.6 2.3E+02 0.005 24.1 12.2 167 253-428 26-198 (226)
470 cd07153 Fur_like Ferric uptake 39.3 83 0.0018 23.1 5.0 45 72-116 6-50 (116)
471 PF10516 SHNi-TPR: SHNi-TPR; 38.6 76 0.0016 18.0 3.5 27 407-433 2-28 (38)
472 COG1528 Ftn Ferritin-like prot 38.3 96 0.0021 24.7 5.1 17 17-33 52-68 (167)
473 KOG0991 Replication factor C, 38.1 2.6E+02 0.0056 24.0 10.8 132 68-208 132-279 (333)
474 KOG0292 Vesicle coat complex C 37.5 3.2E+02 0.0069 28.5 9.5 132 143-296 650-781 (1202)
475 PF02607 B12-binding_2: B12 bi 37.2 78 0.0017 21.2 4.2 38 77-114 12-49 (79)
476 KOG0687 26S proteasome regulat 37.2 3.2E+02 0.0069 24.7 13.4 94 237-332 104-210 (393)
477 cd00280 TRFH Telomeric Repeat 37.0 2.3E+02 0.005 23.1 7.5 21 311-331 119-139 (200)
478 KOG2422 Uncharacterized conser 36.8 4.3E+02 0.0092 26.1 12.8 92 174-265 349-447 (665)
479 PRK00301 aat leucyl/phenylalan 36.5 13 0.00028 31.3 0.3 79 1-80 87-180 (233)
480 KOG2063 Vacuolar assembly/sort 36.5 5.4E+02 0.012 27.2 23.1 162 30-213 473-637 (877)
481 KOG2581 26S proteasome regulat 36.4 3.6E+02 0.0079 25.2 12.4 24 306-329 212-235 (493)
482 PF09454 Vps23_core: Vps23 cor 35.8 1.2E+02 0.0027 19.6 4.9 48 266-314 6-53 (65)
483 PRK09462 fur ferric uptake reg 35.6 2.1E+02 0.0046 22.2 7.0 60 92-152 8-68 (148)
484 KOG1463 26S proteasome regulat 35.3 3.5E+02 0.0076 24.7 9.4 21 276-296 12-32 (411)
485 KOG2471 TPR repeat-containing 34.3 4.3E+02 0.0094 25.5 11.1 71 377-448 212-285 (696)
486 PF01475 FUR: Ferric uptake re 33.6 85 0.0018 23.3 4.3 43 71-113 12-54 (120)
487 COG5191 Uncharacterized conser 33.6 1.2E+02 0.0026 27.0 5.4 69 369-438 105-174 (435)
488 PRK10304 ferritin; Provisional 33.5 82 0.0018 25.2 4.3 17 17-33 52-68 (165)
489 PF11817 Foie-gras_1: Foie gra 33.2 2.6E+02 0.0056 24.1 7.7 22 344-365 183-204 (247)
490 cd07153 Fur_like Ferric uptake 33.2 1.3E+02 0.0028 22.0 5.2 44 173-216 6-49 (116)
491 KOG0686 COP9 signalosome, subu 32.6 4.2E+02 0.0092 24.8 13.4 58 239-296 152-215 (466)
492 PF09670 Cas_Cas02710: CRISPR- 32.6 4.2E+02 0.0091 24.8 12.2 55 176-231 140-198 (379)
493 PF11768 DUF3312: Protein of u 32.3 3.9E+02 0.0085 26.1 9.0 56 140-195 412-472 (545)
494 PF12862 Apc5: Anaphase-promot 32.3 1.8E+02 0.0039 20.4 7.6 19 313-331 51-69 (94)
495 PRK09462 fur ferric uptake reg 32.2 2.4E+02 0.0052 21.9 7.0 58 294-353 8-66 (148)
496 PF08311 Mad3_BUB1_I: Mad3/BUB 31.7 2.3E+02 0.0049 21.4 8.8 43 220-262 81-124 (126)
497 KOG2659 LisH motif-containing 31.4 3.3E+02 0.0071 23.1 8.8 61 235-295 24-91 (228)
498 cd08332 CARD_CASP2 Caspase act 31.4 1.9E+02 0.004 20.3 6.5 34 250-283 47-80 (90)
499 smart00638 LPD_N Lipoprotein N 31.2 5.4E+02 0.012 25.6 20.5 260 17-280 292-574 (574)
500 PF07575 Nucleopor_Nup85: Nup8 30.8 40 0.00086 33.4 2.6 76 50-128 390-465 (566)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-72 Score=556.92 Aligned_cols=454 Identities=29% Similarity=0.549 Sum_probs=441.3
Q ss_pred HHHHHHHhh---cChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCC
Q 012504 5 HIETLIQLS---KTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTS 80 (462)
Q Consensus 5 ~~~~~l~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g 80 (462)
.+..++..| ++++.+.+++..|.+.|+.||..+||.++ .+...|+++.|+++|++|+. ||..+||.+|.+|++.|
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-CCeeeHHHHHHHHHHCc
Confidence 344555555 67899999999999999999999999999 66666799999999999998 99999999999999999
Q ss_pred CchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHh
Q 012504 81 CSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFE 160 (462)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 160 (462)
++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+++.|+++|++.|++++|.++|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH
Q 012504 161 EMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG 240 (462)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 240 (462)
+|.++|..+||.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++|+..++
T Consensus 284 ~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (462)
+.|+++|+++|++++|.++|++|.++|+.+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..+
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++|+.+|...|+. +.|..+++++.+
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~-~~a~~~~~~l~~ 522 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL-ELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc-HHHHHHHHHHhC
Confidence 9999999998877999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCCccceEEECCeEEEEecCCc
Q 012504 401 LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEMSKET 460 (462)
Q Consensus 401 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (462)
+.|++...|..++.+|.+.|++++|.++++.|++.|+.+.|+++|+++++.+|.|.++|.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 999999999999999999999999999999999999999999999999999999999875
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-69 Score=548.33 Aligned_cols=452 Identities=31% Similarity=0.612 Sum_probs=435.9
Q ss_pred HHHHHHhh---cChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCC
Q 012504 6 IETLIQLS---KTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSC 81 (462)
Q Consensus 6 ~~~~l~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~ 81 (462)
+.+++..| |+++.+++++..|.+.|+.||..+||.++ .+...|++++|.++|++|+. ||..+||.+|.+|++.|+
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCC
Confidence 44455555 67888899999999999999999999999 66666799999999999988 999999999999999999
Q ss_pred chhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhc
Q 012504 82 SIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEE 161 (462)
Q Consensus 82 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 161 (462)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHH
Q 012504 162 MPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGT 241 (462)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (462)
|.++|..+|+.++.+|.+.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..+++
T Consensus 450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 9999999999999999999999999999999986 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDE 321 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 321 (462)
+|+++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 9999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 322 GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+.+|+..+|++|+.+|..+|+. +.++...+++.++
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~-e~~e~~a~~l~~l 686 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV-ELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhh
Confidence 999999999767999999999999999999999999999999999899999999999999999999 9999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCCccceEEECCeEEEEecCCcC
Q 012504 402 EPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEMSKETA 461 (462)
Q Consensus 402 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (462)
.|+++..|..+++.|...|+|++|.++.+.|++.|+.+.|++|||++++.+|.|.++|+.
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-62 Score=496.20 Aligned_cols=431 Identities=26% Similarity=0.410 Sum_probs=398.0
Q ss_pred HHHHHHhhc---ChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCC
Q 012504 6 IETLIQLSK---TVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSC 81 (462)
Q Consensus 6 ~~~~l~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~ 81 (462)
|.+++..|+ ++..+++++..+.+.|+.||..++|.++ .+...|+++.|.++|++|+. ||..+||++|.+|++.|+
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-~d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-RDCISWNAMISGYFENGE 268 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-CCcchhHHHHHHHHhCCC
Confidence 334444442 4455555666666666666666777777 55556699999999999998 999999999999999999
Q ss_pred chhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhc
Q 012504 82 SIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEE 161 (462)
Q Consensus 82 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 161 (462)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHH
Q 012504 162 MPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGT 241 (462)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (462)
|..+|..+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++
T Consensus 349 m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDE 321 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 321 (462)
.|+++|++.|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 9999999999999999999999999999999999999999999999999999986 599999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 322 GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
+.+++..+.+. |+.++..+++.|+++|++.|++++|.++|+.+ .||..+|++++.+|++.|+. ++|.++|++|.+.
T Consensus 508 ~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~-~~A~~lf~~M~~~ 583 (857)
T PLN03077 508 GKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKG-SMAVELFNRMVES 583 (857)
T ss_pred hHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Confidence 99999999887 99999999999999999999999999999998 78999999999999999999 9999999999874
Q ss_pred C-CCCCchHHHHHHHHhhcCCHHHHHHHHHHHh-cCCCccCCc
Q 012504 402 E-PELGANYVLAASVSSLSGNWDTAAELMVAIN-QKGLNKVPG 442 (462)
Q Consensus 402 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ 442 (462)
+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 3 3345589999999999999999999999998 678887653
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8e-61 Score=476.26 Aligned_cols=434 Identities=14% Similarity=0.179 Sum_probs=402.1
Q ss_pred hhcChhHHHHHHHHHHHhCC-CCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHH
Q 012504 12 LSKTVHHLHQLHTLFLKTSL-DHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLF 89 (462)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~ 89 (462)
.+|+++.|.++++.|.+.|+ .++..+++.++ .|...|.+++|.++|+.|+. ||..+|+.+|.+|++.|+++.|.++|
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45899999999999999996 45666777777 77778899999999999998 99999999999999999999999999
Q ss_pred HHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC----CC
Q 012504 90 DEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP----VR 165 (462)
Q Consensus 90 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~ 165 (462)
+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .|
T Consensus 461 ~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 461 RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 58
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHH--CCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKL--ANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTAL 243 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 243 (462)
|..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 999999999999999999999999999976 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMRE----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLV 319 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 319 (462)
+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999984 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012504 320 DEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT---EPNAVILRSFLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 320 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 396 (462)
++|.++|++|... ++.||..+|+.||.+|++.|++++|.++|++|.. .||..+|+.++.+|.+.|+. +.|.++++
T Consensus 701 eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l-e~A~~l~~ 778 (1060)
T PLN03218 701 KKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA-DVGLDLLS 778 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHH
Confidence 9999999999876 9999999999999999999999999999999853 69999999999999999999 99999999
Q ss_pred HHHhcC-CCCCchHHHHHHHHh----hc-------------------CCHHHHHHHHHHHhcCCCccCCccceEEE
Q 012504 397 LLLKLE-PELGANYVLAASVSS----LS-------------------GNWDTAAELMVAINQKGLNKVPGCSWVKV 448 (462)
Q Consensus 397 ~~~~~~-p~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 448 (462)
++.+.+ .++..+|..++..|. ++ +..++|..+|++|++.|+.|+..+....+
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 999854 334557877775533 22 22467999999999999999865444333
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.8e-60 Score=469.65 Aligned_cols=433 Identities=17% Similarity=0.220 Sum_probs=396.8
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCC---CCCcccHHHHHHHHHhCCC
Q 012504 6 IETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPV---TPPLFAYNTLIRAYAKTSC 81 (462)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~---~~~~~~y~~li~~~~~~g~ 81 (462)
+...+..+|+++.|.++|+.|.+.|+.||..+|+.+| .|...|+++.|.++|++|.. .||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 3444455589999999999999999999999999999 77777899999999999974 3999999999999999999
Q ss_pred chhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHH--hCCCCccchHhHHHHHHHhcCChhHHHHHH
Q 012504 82 SIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFK--VGLDSDKYIGNTLLRMYAACKEIDVAKAVF 159 (462)
Q Consensus 82 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 159 (462)
+++|+++|+.|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.. .|+.||..+|++++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 578999999999999999999999999999
Q ss_pred hcCCC----CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCc
Q 012504 160 EEMPV----RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLEL 235 (462)
Q Consensus 160 ~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (462)
++|.+ |+..+|+.+|.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99974 57799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhcc----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMR----EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 58999999999999999999999999999999999999999999999
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cC-------------------CHHHHHHHHHhCCC-
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AG-------------------LIEEAYHIIRNMPT- 367 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-------------------~~~~A~~~~~~~~~- 367 (462)
+|++.|+++.|.+++.+|.+. |+.||..+|+.++..|.+ ++ ..++|..+|++|..
T Consensus 763 a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 999999999999999999887 999999999999876432 11 23679999999954
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCCc
Q 012504 368 --EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK-LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPG 442 (462)
Q Consensus 368 --~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 442 (462)
.|+..+|..++.++...+.. ..+..+++.+.. -.+++..+|..++.++.+. .++|..++++|.+.|+.|+..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 59999999999887788888 888888877653 3456677999999987332 368999999999999998765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-55 Score=433.65 Aligned_cols=384 Identities=23% Similarity=0.373 Sum_probs=365.2
Q ss_pred ccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCC-CCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCcc
Q 012504 58 NNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDK 136 (462)
Q Consensus 58 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (462)
...+..++..+|+.+|..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||.
T Consensus 79 ~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~ 158 (697)
T PLN03081 79 DDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158 (697)
T ss_pred ccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch
Confidence 334444677899999999999999999999999999865 7899999999999999999999999999999999999999
Q ss_pred chHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 012504 137 YIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI 216 (462)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 216 (462)
.+|+.|+.+|++.|+++.|.++|++|.+||..+|+.++.+|.+.|++++|+++|++|.+.|+.|+..||..++.+|+..|
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 217 NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+.+.+.+++..+.+.|+.++..+++.|+++|+++|++++|.++|++|.++|+.+|+.+|.+|++.|++++|.++|++|.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 012504 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRS 376 (462)
Q Consensus 297 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 376 (462)
.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|+.|+++|++.|++++|.++|++|. +||..+|+.
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~ 396 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNA 396 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHH
Confidence 999999999999999999999999999999999987 999999999999999999999999999999998 579999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcC-CCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc-CCCccCCccc
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLE-PELGANYVLAASVSSLSGNWDTAAELMVAINQ-KGLNKVPGCS 444 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 444 (462)
++.+|++.|+. ++|.++|++|.+.+ .++..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+....
T Consensus 397 lI~~y~~~G~~-~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 397 LIAGYGNHGRG-TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 99999999999 99999999998743 33456999999999999999999999999985 5888765443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.5e-27 Score=246.96 Aligned_cols=420 Identities=13% Similarity=0.043 Sum_probs=250.6
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCC--CCCcccHHHHHHHHHhCCCch
Q 012504 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPV--TPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~--~~~~~~y~~li~~~~~~g~~~ 83 (462)
...+...|+++.|..+++.+.+.. +.+..++..+. .+...|++++|.+.|++... +.+..++..+...+...|+++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH
Confidence 344455577777777777776543 33444555554 44455577777777766422 134455666667777777777
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 84 ESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
+|.+.|+.+.+.+. .+..++..+...+.+.|+.++|..+++.+.+.+ +.+...+..++..+...|++++|..+++.+.
T Consensus 517 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 517 DAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777766532 245566666666666777777777777766654 2344555666666677777777777766664
Q ss_pred C---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH
Q 012504 164 V---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG 240 (462)
Q Consensus 164 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 240 (462)
. .+..+|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 2 345566666666666777777777776666542 2344556666666666666666666666666553 4445566
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG 317 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 317 (462)
..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+++...+ |+..++..+..++...|
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCC
Confidence 6666666666666666666666653 233455555666666666666666666666542 33344555555566666
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
++++|...++.+.+ ..+.+...+..+...|...|++++|.+.|+++.. ++++..+..+...+...|+. + |...+
T Consensus 751 ~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-~-A~~~~ 826 (899)
T TIGR02917 751 NTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDP-R-ALEYA 826 (899)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcH-H-HHHHH
Confidence 66666666666654 2234455555666666666666666666665532 23445555555555555552 2 55555
Q ss_pred HHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 396 KLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 396 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+++.+..|+++..+..++.++...|++++|.++++++.+.++
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 555555555555555555555555555555555555555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=7.1e-27 Score=241.97 Aligned_cols=417 Identities=9% Similarity=-0.010 Sum_probs=260.5
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCC--CCCcccHHHHHHHHHhCCCch
Q 012504 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPV--TPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~--~~~~~~y~~li~~~~~~g~~~ 83 (462)
..++...|+++.|.+.++.+.+... .+...+..+. .+...|++++|.+.|+++.. +.+..++..+...+.+.|+.+
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHH
Confidence 3444455666777777766665431 1222333333 33444566777766665532 134556666666676777777
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 84 ESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
+|...++++.+.+. .+...+..+...+...|++++|..+++.+.+.. +.+..+|..+..++...|++++|...|+++.
T Consensus 551 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 551 EAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777665432 244555566666666777777777777666543 3345566666777777777777777776654
Q ss_pred C---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH
Q 012504 164 V---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG 240 (462)
Q Consensus 164 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 240 (462)
. .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+...+
T Consensus 629 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 629 ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 2 245556666666667777777777777666542 3345566666666667777777777777666654 4455566
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE--KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGL 318 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 318 (462)
..+...+...|++++|.+.|+.+.+ |+..++..++..+...|++++|.+.++++.+.. +.+...+..+...|...|+
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 6666667777777777777766653 334555566666777777777777777666652 3345566666666666777
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012504 319 VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 396 (462)
+++|...|+++.+. .+++..++..+...+...|+ .+|+..++++.. +.++..+..+...+...|++ ++|...++
T Consensus 786 ~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~ 861 (899)
T TIGR02917 786 YDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA-DRALPLLR 861 (899)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 77777777776652 24456666666666777666 667666666522 23345555666666677777 77777777
Q ss_pred HHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 397 LLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 397 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
++.+..|.++.++..++.++.+.|++++|.+++++|.
T Consensus 862 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 862 KAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777666677777777777777777777776664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=2.1e-20 Score=194.94 Aligned_cols=422 Identities=12% Similarity=0.027 Sum_probs=238.4
Q ss_pred HHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh--hhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCch
Q 012504 8 TLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI--LTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~ 83 (462)
.++...|+.++|.+.++.+.+.+ +|+........ ....-++.++|.+.++++... .+...+..+...+...|+.+
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 35667799999999999998764 23322111111 113346899999999887543 34566788888999999999
Q ss_pred hHHHHHHHHHHCCC------------------C--------------CCcchHH---------------------HHHHH
Q 012504 84 ESIKLFDEMLKTGL------------------R--------------PDNFTYP---------------------FVVKA 110 (462)
Q Consensus 84 ~a~~~~~~m~~~g~------------------~--------------p~~~~~~---------------------~ll~~ 110 (462)
+|++.++++.+... . |+...+. .....
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999998865321 0 1110000 11223
Q ss_pred hhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--CCh---hhHH------------HH
Q 012504 111 CGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--RDV---VSWS------------SM 173 (462)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~------------~l 173 (462)
+...|++++|...+++.++.. +.+...+..+..++.+.|++++|+..|++..+ |+. ..|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 455688888888888888765 33567778888888888999999888887763 211 1121 22
Q ss_pred HHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHH------
Q 012504 174 IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMY------ 247 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------ 247 (462)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHH
Confidence 345677888888988888888753 3355667777888888888998888888888764 33344444444443
Q ss_pred ------------------------------------HhcCChHHHHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHH
Q 012504 248 ------------------------------------SKCGHVEKAFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 248 ------------------------------------~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 288 (462)
...|++++|++.|++..+ | ++..+..+...|.+.|++++|.
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 233444444444444432 1 2233444444455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc-----------------------------------
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVY----------------------------------- 333 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------------------------- 333 (462)
..++++.+... .+...+..+...+...++.++|...++.+....
T Consensus 516 ~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 55555443211 122222222222334444555555444332100
Q ss_pred ---CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 334 ---NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 334 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
..+++...+..+...+.+.|++++|++.|+++.. +.+...+..+...+...|+. ++|.+.++.+.+..|+++..
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~-~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL-AAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHhccCCCChHH
Confidence 0011122233344444444555555555544421 22344444555555555555 55555555555555555555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 409 YVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
+..++.++...|++++|.++++.+...
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 555555555555555555555555443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=7.7e-20 Score=190.72 Aligned_cols=409 Identities=9% Similarity=-0.019 Sum_probs=292.7
Q ss_pred HhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCC-CCc---ccHHH------------HH
Q 012504 11 QLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVT-PPL---FAYNT------------LI 73 (462)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~-~~~---~~y~~------------li 73 (462)
...|+++.|...++..++... -+...+..+- .+...|++++|...|++.... |+. ..|.. ..
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 344677777777777776531 1333333333 334455777777777654321 221 11211 13
Q ss_pred HHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 74 RAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
..+.+.|++++|++.|+++.+... .+...+..+...+...|++++|++.|+++++... .+...+..+...+. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHH
Confidence 345677788888888888777532 2445556666777777888888888887777642 23445555555553 45677
Q ss_pred HHHHHHhcCCCCC------------hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhH
Q 012504 154 VAKAVFEEMPVRD------------VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 154 ~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
+|...++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777665321 1234455667788899999999999988753 23556777788889999999999
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC----h---------hhHHHHHHHHHHcCChHHHH
Q 012504 222 ESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN----L---------QSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~a~ 288 (462)
...++++.+.. +.+...+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999988754 4455555556666778899999999998876421 1 11234567788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT- 367 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 367 (462)
.+++. .+++...+..+...+...|++++|...|+++.+. -+.+...+..++..|...|++++|++.++.+..
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 98872 2445567777888899999999999999999874 344588899999999999999999999998754
Q ss_pred C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 368 E-PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA------NYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 368 ~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
. .+...+..+..++...|++ ++|.++++++....|+++. ++..++..+...|++++|++.|+...
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDT-AAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCH-HHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 3466677788889999999 9999999999988766543 56667899999999999999999875
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.8e-22 Score=177.24 Aligned_cols=363 Identities=14% Similarity=0.129 Sum_probs=295.9
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccc-hHhHHH
Q 012504 65 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKY-IGNTLL 143 (462)
Q Consensus 65 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 143 (462)
-..+|..+...+-..|++++|+.+++.+++...+ ....|..+..++...|+.+.|.+.+...++.+ |+.. ..+.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 4568999999999999999999999999986433 57789999999999999999999999988864 4333 234455
Q ss_pred HHHHhcCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhcccchH
Q 012504 144 RMYAACKEIDVAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN-SVTLVSLVSACTSLINVR 219 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~ 219 (462)
..+-..|++.+|...|.+..+ | -.++|..|...+-.+|+...|+..|++..+. .|+ ...|..|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 555667889999888877664 3 3457888888888899999999999988774 454 357888888888889999
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--KN-LQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
.|...|.+..... +....++..+...|...|.++-|+..|++..+ |+ +..|+.|..++-..|+..+|.+.+.+...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9998888887764 44566777888888999999999999998875 33 46899999999999999999999998887
Q ss_pred CCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HH
Q 012504 297 TGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMP-TEPN-AV 372 (462)
Q Consensus 297 ~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~ 372 (462)
. .|+ +...+.|...+...|.++.|..+|..... +.|. ....+.|...|-+.|++++|+..|++.. .+|+ ..
T Consensus 349 l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 L--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred h--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 5 344 56788888899999999999999988874 3455 6678888889999999999999998864 3454 67
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
.++.+...|-..|+. +.|.+.+.++...+|.-.+.+..|+.+|...|+..+|+.-|+...+..+..
T Consensus 424 a~~NmGnt~ke~g~v-~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDV-SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHhcchHHHHhhhH-HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 888888999999999 999999999999999988899999999999999999999999887766543
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.7e-20 Score=182.39 Aligned_cols=360 Identities=13% Similarity=0.005 Sum_probs=264.9
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHh
Q 012504 69 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAA 148 (462)
Q Consensus 69 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (462)
+......+.+.|++++|++.|++.++ ..|+...|..+..++...|++++|...++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33455566667777777777777665 34566666666666777777777777777766654 2234556666667777
Q ss_pred cCChhHHHHHHhcCC---------------------------------CCChhhHHHH----------------------
Q 012504 149 CKEIDVAKAVFEEMP---------------------------------VRDVVSWSSM---------------------- 173 (462)
Q Consensus 149 ~~~~~~A~~~~~~~~---------------------------------~~~~~~~~~l---------------------- 173 (462)
.|++++|+..|..+. ..+...+..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 777776655432221 0000000000
Q ss_pred --------HHH------HHcCCChhHHHHHHHHhHHCC-CCC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchH
Q 012504 174 --------IAG------FVACDSPSDALKVFHRMKLAN-ESP-NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDV 237 (462)
Q Consensus 174 --------~~~------~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 237 (462)
+.. ....+++++|.+.|++....+ ..| +...+..+...+...|++++|...+++..+.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 012357889999999988764 233 44567777888889999999999999998875 4456
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
..|..+..++...|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 6888899999999999999999998764 356789999999999999999999999999863 224567778888899
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HH-------HHHHHHHHHHHcC
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AV-------ILRSFLGACRNHG 385 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~-------~~~~l~~~~~~~~ 385 (462)
+.|++++|...+++..+ ..+.+...++.+...+...|++++|++.|++... .|+ .. .++.....+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999986 3344578899999999999999999999988632 222 11 1222222334468
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
++ ++|..+++++.++.|++...+..++.++.+.|++++|++.|++..+..
T Consensus 523 ~~-~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 523 DF-IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 99 999999999999999998889999999999999999999999887553
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2e-21 Score=181.00 Aligned_cols=304 Identities=13% Similarity=0.071 Sum_probs=208.7
Q ss_pred HHhcCChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC---HHHHHHHHHHHhcccchH
Q 012504 146 YAACKEIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN---SVTLVSLVSACTSLINVR 219 (462)
Q Consensus 146 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~ 219 (462)
+...|++++|+..|+++... +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44556666666666665522 334556666666666666666666666655422111 134555666666677777
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh--------hhHHHHHHHHHHcCChHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL--------QSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
.|..+++++.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+. ..+..+...+...|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777766543 34556666677777777777777777776654211 13455677778888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN 370 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~ 370 (462)
+++.+.. +.+...+..+...+.+.|++++|.++++++... +......++..++.+|.+.|++++|...++++.. .|+
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8887753 223556777778888889999999999888764 2222245678888889999999999999888743 466
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh---cCCHHHHHHHHHHHhcCCCccCCccceEE
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL---SGNWDTAAELMVAINQKGLNKVPGCSWVK 447 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 447 (462)
...+..++..+.+.|++ +.|..+++++.+..|++. .+..+...+.. .|+.++++.++++|.++++.++|.+....
T Consensus 282 ~~~~~~la~~~~~~g~~-~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~ 359 (389)
T PRK11788 282 ADLLLALAQLLEEQEGP-EAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRN 359 (389)
T ss_pred chHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCC
Confidence 66777888889999999 999999999998888876 45444444443 56889999999999998888888865544
Q ss_pred ECCeEEE
Q 012504 448 VNDGSAE 454 (462)
Q Consensus 448 ~~~~~~~ 454 (462)
.+....+
T Consensus 360 cg~~~~~ 366 (389)
T PRK11788 360 CGFTART 366 (389)
T ss_pred CCCCCcc
Confidence 4444433
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=9.7e-21 Score=169.54 Aligned_cols=368 Identities=15% Similarity=0.107 Sum_probs=312.0
Q ss_pred hhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHH-hhhhcCchhHH
Q 012504 45 SLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKA-CGRCLLIGIGG 121 (462)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~ 121 (462)
...|++++|+..++.+-.. ..+.+|..+..++...|+.+.|.+.|.+.++ +.|+.....+-+.. +-..|++.+|.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 5556999999999876433 4688999999999999999999999999987 45666655444443 34579999999
Q ss_pred HHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCC---hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCC
Q 012504 122 SVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRD---VVSWSSMIAGFVACDSPSDALKVFHRMKLANE 198 (462)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 198 (462)
..+.+.++..+ -=...|+.|...+-..|++..|+..|++...-| ..+|-.|...|...+.+++|+..|.+....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 99998887642 234678889999999999999999999988543 568999999999999999999999998774
Q ss_pred CCC-HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHH
Q 012504 199 SPN-SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIM 274 (462)
Q Consensus 199 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 274 (462)
.|+ ...+..+...|-.+|.++.|+..|++.++.. +--...|+.|..++-..|+..+|.+.|.+... + ...+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 554 4678888888999999999999999999875 44577999999999999999999999998874 3 45788999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhc
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRA 352 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 352 (462)
..+|...|.+++|..+|....+- .|. ...++.|...|-.+|++++|...|++.. .+.|+ ...|+.+...|...
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence 99999999999999999998874 555 4578899999999999999999999998 56887 78999999999999
Q ss_pred CCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH
Q 012504 353 GLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 353 ~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
|+.+.|.+.+.+... .|. ....+.|...|...|+. .+|++.++.++++.|+.+..+..++.++.--.+|.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni-~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI-PEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc-HHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999988743 444 67888999999999999 999999999999999999999999887755444433
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.7e-19 Score=173.91 Aligned_cols=350 Identities=8% Similarity=-0.050 Sum_probs=273.6
Q ss_pred CHHHHHHHhccCCCC-----CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHH
Q 012504 49 SLHFTRSLFNNLPVT-----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSV 123 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~-----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 123 (462)
+++..--.|...+++ .+..-...++..+.+.|++++|+.+++........+ ...+..+..+....|+++.|...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~ 98 (656)
T PRK15174 20 DWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQV 98 (656)
T ss_pred chhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHH
Confidence 444444455555443 334445667788889999999999999999875543 44455555666779999999999
Q ss_pred HHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCC
Q 012504 124 HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESP 200 (462)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 200 (462)
++.+.... +.+...+..+...+...|++++|...|++... | +...+..+...+...|++++|...++.+..... .
T Consensus 99 l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~ 176 (656)
T PRK15174 99 VNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-P 176 (656)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-C
Confidence 99999885 33566788889999999999999999999864 3 567888899999999999999999998876532 2
Q ss_pred CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHH
Q 012504 201 NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISG 277 (462)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 277 (462)
+...+..+ ..+...|++++|...++.+.+....++......++.++...|++++|+..+++..+ .+...+..+...
T Consensus 177 ~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~ 255 (656)
T PRK15174 177 RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLA 255 (656)
T ss_pred CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 23333333 34778899999999999988765334445556667888999999999999998875 345778889999
Q ss_pred HHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 278 LADNGRGNY----AISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 278 ~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
+...|++++ |...|++..... +.+...+..+...+...|++++|...+++.... -+.+...+..+..+|.+.|
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 999999986 899999998863 224668888899999999999999999999864 2334667788899999999
Q ss_pred CHHHHHHHHHhCCC-CCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 354 LIEEAYHIIRNMPT-EPNAVI-LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 354 ~~~~A~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++++|...|+++.. .|+... +..+..++...|+. ++|...++++.+..|++.
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~-deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT-SEAESVFEHYIQARASHL 386 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhChhhc
Confidence 99999999998753 455433 44456778999999 999999999999998875
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.2e-19 Score=169.05 Aligned_cols=293 Identities=12% Similarity=0.042 Sum_probs=183.8
Q ss_pred HHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 74 RAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
..+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++..
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------------- 105 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---------------- 105 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH----------------
Confidence 344556677777777777766532 133455555566666666666666666655532111100
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCC
Q 012504 154 VAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGL 233 (462)
Q Consensus 154 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (462)
....+..+...|.+.|++++|..+|+++.+.. +++..++..++..+...|++++|...++.+.+.+.
T Consensus 106 ------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 106 ------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 01234444455555555555555555554431 23344555555555555555555555555554432
Q ss_pred Cch----HhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012504 234 ELD----VALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISF 306 (462)
Q Consensus 234 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 306 (462)
.+. ...+..++..+.+.|++++|...|+++.+. +...+..+...+.+.|++++|.+.++++...+......++
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 211 123445666677777777777777776532 3456667778888888888888888888775333224567
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH--
Q 012504 307 SAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFLGACRN-- 383 (462)
Q Consensus 307 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~-- 383 (462)
..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++.. .|+...+..++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 77888888888888888888888754 46656667888888888888888888887643 5788888877776654
Q ss_pred -cCChHHHHHHHHHHHHh
Q 012504 384 -HGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 384 -~~~~~~~a~~~~~~~~~ 400 (462)
.|+. .++..+++++.+
T Consensus 330 ~~g~~-~~a~~~~~~~~~ 346 (389)
T PRK11788 330 EEGRA-KESLLLLRDLVG 346 (389)
T ss_pred CCccc-hhHHHHHHHHHH
Confidence 4577 778888887775
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=2.4e-18 Score=171.86 Aligned_cols=387 Identities=9% Similarity=-0.035 Sum_probs=281.4
Q ss_pred hhcCCHHHHHHHhccCCC-C-CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHH
Q 012504 45 SLSISLHFTRSLFNNLPV-T-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGS 122 (462)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~-~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 122 (462)
...|+.++|.+++.+... . .+...+..+...+...|++++|.++|+..++.. +.+...+..+...+...|++++|..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777799999998887653 2 444468888889999999999999999988753 2245556677777888999999999
Q ss_pred HHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCC
Q 012504 123 VHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANES 199 (462)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 199 (462)
.++.+++.. +.+.. +..+..++...|+.++|+..++++.. | +...+..+...+...+..++|++.++.... .
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~ 179 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---T 179 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---C
Confidence 999998874 33444 77888888999999999999988874 3 555666777788888888999988876654 2
Q ss_pred CCH------HHHHHHHHHHh-----cccch---HhHHHHHHHHHHh-CCCchHh-HH----HHHHHHHHhcCChHHHHHH
Q 012504 200 PNS------VTLVSLVSACT-----SLINV---RAGESIHSYAVVN-GLELDVA-LG----TALVEMYSKCGHVEKAFKV 259 (462)
Q Consensus 200 p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~ 259 (462)
|+. .....++.... ..+++ +.|...++.+.+. ...|+.. .+ ...+.++...|++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 321 01112222221 12234 6677788887754 1122221 11 1112344567899999999
Q ss_pred HhhccCCC---h-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 260 FNLMREKN---L-QSWTIMISGLADNGRGNYAISLFAKMIQTGLKP---DSISFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 260 ~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
|+.+.+.+ + .....+...|...|++++|...|+++....... .......+..++...|++++|..+++.+...
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 99988643 2 122235678999999999999999987653211 1234556666788999999999999998764
Q ss_pred cC----------CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012504 333 YN----------IKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKL 397 (462)
Q Consensus 333 ~~----------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 397 (462)
.. -.|+ ...+..+...+...|++++|++.++++.. +.+...+..+...+...|++ +.|++.+++
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~-~~A~~~l~~ 418 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP-RAAENELKK 418 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHH
Confidence 11 0122 23455677888899999999999998743 34577888888899999999 999999999
Q ss_pred HHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 398 LLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 398 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+.+..|+++..+..++..+.+.|++++|..+++++++..+.
T Consensus 419 al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 419 AEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998865543
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.7e-18 Score=169.29 Aligned_cols=355 Identities=12% Similarity=-0.008 Sum_probs=279.1
Q ss_pred HHhCCCchhHHHHHHHHHHCC--CCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 76 YAKTSCSIESIKLFDEMLKTG--LRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 76 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
+.+..+|+.---.|....++- -.-+..-...++..+.+.|+++.|..+++..+...+.+ ...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH
Confidence 345556655444444432220 11133345566777889999999999999999886554 444555667777899999
Q ss_pred HHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHH
Q 012504 154 VAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVV 230 (462)
Q Consensus 154 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 230 (462)
+|...|+++.. | +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999873 3 56788888999999999999999999998852 34566788889999999999999999998877
Q ss_pred hCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012504 231 NGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISF 306 (462)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 306 (462)
... .+...+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|...++++.... +.+...+
T Consensus 173 ~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 652 333344333 34788999999999999876532 3344556778899999999999999999864 2356677
Q ss_pred HHHHHHhhccCcHHH----HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH
Q 012504 307 SAILSACSHLGLVDE----GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGA 380 (462)
Q Consensus 307 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 380 (462)
..+...+...|++++ |...++++... .+.+...+..+...+.+.|++++|...+++... .| +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888889999999885 89999999863 234578899999999999999999999998743 33 46677778899
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+...|++ +.|...++++.+..|+++..+..++.++...|++++|+..|+...+..+.
T Consensus 328 l~~~G~~-~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 328 LRQVGQY-TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999 99999999999999998876777888999999999999999998876554
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=2.3e-17 Score=165.16 Aligned_cols=413 Identities=10% Similarity=-0.050 Sum_probs=268.5
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHhhhhh--------cCCHHHHHHHhccCCC-CC--CcccHHHH-HH
Q 012504 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSL--------SISLHFTRSLFNNLPV-TP--PLFAYNTL-IR 74 (462)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--------~~~~~~A~~~~~~~~~-~~--~~~~y~~l-i~ 74 (462)
..+|...++.+.|.++++++.+.... +..++..+. .. |.+.+.|.+.++ ... .| +....... .+
T Consensus 115 ~~~La~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la--~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~r 190 (987)
T PRK09782 115 ERSLAAIPVEVKSVTTVEELLAQQKA-CDAVPTLRC--RSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQ 190 (987)
T ss_pred HHHHHHhccChhHHHHHHHHHHhCCC-ChhHHHHHH--HHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHH
Confidence 33344447777777788887766422 222332222 22 556666666665 221 13 34444444 78
Q ss_pred HHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhh-hcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 75 AYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR-CLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 75 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
.|.+.|++++|++++.++.+.++. +..-...+-.++.. .++ +.+..+++. .++.+...+..++..|.+.|+.+
T Consensus 191 lY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~ 264 (987)
T PRK09782 191 RAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKA 264 (987)
T ss_pred HHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHH
Confidence 888899999999999999887533 34445556666666 355 666666442 33457778889999999999999
Q ss_pred HHHHHHhcCCC-----CChhh------------------------------HHHHHHH----------------------
Q 012504 154 VAKAVFEEMPV-----RDVVS------------------------------WSSMIAG---------------------- 176 (462)
Q Consensus 154 ~A~~~~~~~~~-----~~~~~------------------------------~~~l~~~---------------------- 176 (462)
+|.++++++.. |+..+ .-.++..
T Consensus 265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (987)
T PRK09782 265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM 344 (987)
T ss_pred HHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH
Confidence 99999988751 00000 0000111
Q ss_pred -----------------------------------------HHcCCChhHHHHHHHHhHHC-C-CCC-------------
Q 012504 177 -----------------------------------------FVACDSPSDALKVFHRMKLA-N-ESP------------- 200 (462)
Q Consensus 177 -----------------------------------------~~~~~~~~~a~~~~~~m~~~-~-~~p------------- 200 (462)
..+.|+.++|.++|+..... + ..+
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 12234444555544443321 0 001
Q ss_pred ---------------------------------------------------CHHHHHHHHHHHhcccchHhHHHHHHHHH
Q 012504 201 ---------------------------------------------------NSVTLVSLVSACTSLINVRAGESIHSYAV 229 (462)
Q Consensus 201 ---------------------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 229 (462)
+...+..+..++.. ++.++|...+.+..
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 12222222222222 34445555555544
Q ss_pred HhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012504 230 VNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFS 307 (462)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 307 (462)
... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|++++|...+++..+.+ +++...+.
T Consensus 504 ~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~ 580 (987)
T PRK09782 504 QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYW 580 (987)
T ss_pred HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHH
Confidence 442 3333333344455678888888888877653 334456666777888888888888888888764 22223333
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHG 385 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 385 (462)
.+.......|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++... +.+...+..+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 3334445569999999999998853 56788888999999999999999999988743 345677788888999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+. ++|...++++.+..|+++..+..++.++...|++++|+..+++..+..+
T Consensus 658 ~~-eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 658 DI-AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99 9999999999999999999999999999999999999999999887654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=2.8e-17 Score=164.18 Aligned_cols=395 Identities=9% Similarity=-0.041 Sum_probs=295.4
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCC--CCCcccHHHHHHHHHhCCC
Q 012504 5 HIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPV--TPPLFAYNTLIRAYAKTSC 81 (462)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~--~~~~~~y~~li~~~~~~g~ 81 (462)
++.+++.-.|+.++|.+++....... ..+...+..+. .....|++++|.+++++.-. +.+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 56778888899999999999988632 22332344443 45677799999999998422 1456678888899999999
Q ss_pred chhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhc
Q 012504 82 SIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEE 161 (462)
Q Consensus 82 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 161 (462)
+++|+..++++.+... .+.. +..+..++...|+.+.|...++++.+..+. +...+..+..++...+..+.|++.++.
T Consensus 99 ~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 9999999999988632 2445 777888889999999999999999998633 555666788888899999999999998
Q ss_pred CCCCChh--------hHHHHHHHHHc-----CCCh---hHHHHHHHHhHHC-CCCCCHH-HHH----HHHHHHhcccchH
Q 012504 162 MPVRDVV--------SWSSMIAGFVA-----CDSP---SDALKVFHRMKLA-NESPNSV-TLV----SLVSACTSLINVR 219 (462)
Q Consensus 162 ~~~~~~~--------~~~~l~~~~~~-----~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~l~~~~~~~~~~~ 219 (462)
... ++. ....++..... .+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|+.+
T Consensus 176 ~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 176 ANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 875 211 22223333222 2233 7788899888754 2233321 111 1133455779999
Q ss_pred hHHHHHHHHHHhCCC-chHhHHHHHHHHHHhcCChHHHHHHHhhccCCC-------hhhHHHHHHHHHHcCChHHHHHHH
Q 012504 220 AGESIHSYAVVNGLE-LDVALGTALVEMYSKCGHVEKAFKVFNLMREKN-------LQSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
+|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+.+ ......+..++...|++++|...+
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999987632 222 22335788999999999999999986532 234566777889999999999999
Q ss_pred HHHHHCCC-----------CCCH---HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 292 AKMIQTGL-----------KPDS---ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 292 ~~m~~~~~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
+++..... .|+. ..+..+...+...|++++|+..++++.. ..+.+...+..+...+...|++++
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99987531 1232 2445666778899999999999999986 445568889999999999999999
Q ss_pred HHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 358 AYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 358 A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
|++.++++.. .|+ ...+......+...|++ +.|+.+++.+++..|+++.+
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~-~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEW-RQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCHHH
Confidence 9999999754 354 66777777789999999 99999999999999999843
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.8e-17 Score=160.32 Aligned_cols=350 Identities=10% Similarity=-0.033 Sum_probs=250.3
Q ss_pred CCHHHHHHHhccCC-CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHH
Q 012504 48 ISLHFTRSLFNNLP-VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSL 126 (462)
Q Consensus 48 ~~~~~A~~~~~~~~-~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 126 (462)
|+++.|...|++.- ..|+...|..+..+|.+.|++++|++.++..++.... +...+..+..++...|++++|...+..
T Consensus 141 ~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36666666665532 2255556666666666666677776666666654211 334555566666666666666544332
Q ss_pred HHHhC----------------------------C-CCccchHhHH------------------------------HHHH-
Q 012504 127 IFKVG----------------------------L-DSDKYIGNTL------------------------------LRMY- 146 (462)
Q Consensus 127 ~~~~~----------------------------~-~~~~~~~~~l------------------------------~~~~- 146 (462)
+...+ . +++...+..+ +...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 21110 0 0110000000 1100
Q ss_pred -----HhcCChhHHHHHHhcCCCC------ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhc
Q 012504 147 -----AACKEIDVAKAVFEEMPVR------DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN-SVTLVSLVSACTS 214 (462)
Q Consensus 147 -----~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 214 (462)
...+++++|.+.|+..... ....|+.+...+...|++++|+..|++.... .|+ ...|..+...+..
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHH
Confidence 1235788899999877632 3457888888899999999999999999875 454 5678888888999
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHH
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
.|++++|...++++.+.. +.+..++..+..++...|++++|...|++..+. +...+..+...+.+.|++++|+..|
T Consensus 378 ~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999998875 556788999999999999999999999998753 4567888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hh-------HHHHHHHHHHhcCCHHHHHHHHH
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-ME-------HYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
++..... +.+...+..+...+...|++++|...|++.... .|+ .. .++.....+...|++++|.++++
T Consensus 457 ~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 457 RRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9998752 334678888899999999999999999998753 232 11 11222223445799999999999
Q ss_pred hCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 364 NMP-TEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 364 ~~~-~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+.. ..| +...+..+...+...|++ ++|...|+++.++.+...
T Consensus 533 kAl~l~p~~~~a~~~la~~~~~~g~~-~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 533 KALIIDPECDIAVATMAQLLLQQGDV-DEALKLFERAAELARTEG 576 (615)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHhccHH
Confidence 863 234 455788899999999999 999999999999877644
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=6.8e-16 Score=151.64 Aligned_cols=418 Identities=9% Similarity=-0.037 Sum_probs=279.5
Q ss_pred cChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCccc-HHHH--HHHHHhCCCchhHHHHH
Q 012504 14 KTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFA-YNTL--IRAYAKTSCSIESIKLF 89 (462)
Q Consensus 14 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~-y~~l--i~~~~~~g~~~~a~~~~ 89 (462)
|++..|...+++..+....-...++ .++ +....|+.++|+..+++... |+... +..+ ...+...|++++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6777888888777765432222233 444 33445688888888877764 43333 3333 34666678888888888
Q ss_pred HHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--C-C
Q 012504 90 DEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--R-D 166 (462)
Q Consensus 90 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~ 166 (462)
+++.+..+. ++..+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.++++.. | +
T Consensus 126 ~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 126 QSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 888776433 35555566666777788888888887777663 3444444444444445556557888877763 3 4
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHH------HHHHHHHH-----hcccchHh---HHHHHHHHHHh-
Q 012504 167 VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVT------LVSLVSAC-----TSLINVRA---GESIHSYAVVN- 231 (462)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~l~~~~-----~~~~~~~~---a~~~~~~~~~~- 231 (462)
...+..+.....+.|-...|.++..+-... +.+...- ....++.- ....++.. +..-++.+...
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 556677777777778777777666553321 1111110 11111110 01122333 33334444331
Q ss_pred -CCCchHhHH----HHHHHHHHhcCChHHHHHHHhhccCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC----
Q 012504 232 -GLELDVALG----TALVEMYSKCGHVEKAFKVFNLMREKN----LQSWTIMISGLADNGRGNYAISLFAKMIQTG---- 298 (462)
Q Consensus 232 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---- 298 (462)
..++....| --.+-++...|++.++++.|+.+..++ ..+-..+..+|...+++++|..+++++....
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 112222222 233556778899999999999998543 2455677899999999999999999987642
Q ss_pred -CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC----------CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012504 299 -LKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN----------IKPT---MEHYGCMVDMLGRAGLIEEAYHIIRN 364 (462)
Q Consensus 299 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 364 (462)
..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..+...|+..+|++.+++
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 122333457788899999999999999999987311 0122 23445567788899999999999999
Q ss_pred CCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 365 MPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 365 ~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+.. +-|......+...+...|.+ ..|+..++.+..+.|++..+....+.++...|++++|..+.+.+.+..++
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~Rg~p-~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLARDLP-RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 843 45788888899999999999 99999999999999999999999999999999999999998777655443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=3.3e-15 Score=149.83 Aligned_cols=263 Identities=8% Similarity=0.069 Sum_probs=213.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
+...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44566677766665 7888899988887764 466655445555667899999999999997654 444555667788
Q ss_pred HHHhcCChHHHHHHHhhccCCChhhHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHH
Q 012504 246 MYSKCGHVEKAFKVFNLMREKNLQSWTI---MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEG 322 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 322 (462)
++.+.|++++|...++...+.++..... +.......|++++|...+++..+. .|+...+..+..++.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 8999999999999999888654433333 333444559999999999999985 56778889999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 323 KNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+..+++.... -+.+...+..+..++...|++++|++.+++... +.+...+..+..++...|++ +.|...++++.+
T Consensus 629 ~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~-~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM-AATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHh
Confidence 9999999863 234477888899999999999999999998743 34678889999999999999 999999999999
Q ss_pred cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 401 LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 401 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
..|+...+....++...+..+++.|.+-++.....++.
T Consensus 706 l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 706 DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999988877655544
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.6e-15 Score=148.99 Aligned_cols=393 Identities=11% Similarity=-0.003 Sum_probs=285.2
Q ss_pred hhhhHhhhhhcCCHHHHHHHhccCCCC-CCcc-cHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcch-HHHH--HHHh
Q 012504 37 IISRFILTSLSISLHFTRSLFNNLPVT-PPLF-AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFT-YPFV--VKAC 111 (462)
Q Consensus 37 ~~~~ll~~~~~~~~~~A~~~~~~~~~~-~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~l--l~~~ 111 (462)
.|...+.....|+++.|+..|++.... |+.. ....++..+...|+.++|+..+++.. .|+... +..+ ...+
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly 112 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHH
Confidence 344444334556999999999887643 5542 23388888899999999999999988 333333 3333 4467
Q ss_pred hhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChh--hHHHHHHHHHcCCChhHHHHH
Q 012504 112 GRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVV--SWSSMIAGFVACDSPSDALKV 189 (462)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~ 189 (462)
...|++++|.++++.+.+..+. ++..+..++..+...++.++|++.++++...++. .+..++..+...++..+|++.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHH
Confidence 7889999999999999998643 4667778888999999999999999999865443 343333334445666669999
Q ss_pred HHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH------HHHHHHH---H--hcCC---hHH
Q 012504 190 FHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG------TALVEMY---S--KCGH---VEK 255 (462)
Q Consensus 190 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~~---~~~ 255 (462)
++++.+.. +.+...+..+..+..+.|-...|.++..+-...- .+....+ ...+..- . ...+ .+.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99999864 3466777888889999999888887766543221 1111111 1111110 0 1112 344
Q ss_pred HHHHHhhccC---CCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 012504 256 AFKVFNLMRE---KNL-------QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 256 a~~~~~~~~~---~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
|+.-++.+.. +++ .+..-.+-++...+++.++++.++.+...|.+....+-..+..+|...+.+++|+.+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 5555555443 222 122234567888999999999999999988766667888899999999999999999
Q ss_pred HHHHHHhcC----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C---------------CCH-HHHHHHHHHHHHc
Q 012504 326 FDEMARVYN----IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-E---------------PNA-VILRSFLGACRNH 384 (462)
Q Consensus 326 ~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~---------------~~~-~~~~~l~~~~~~~ 384 (462)
|+.+....+ .+++......|.-+|...+++++|..+++.+.. . |+- .....++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 999976421 123444467889999999999999999998843 1 222 2344556778899
Q ss_pred CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 385 GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
|+. ..|++.++++....|.++.....++.++...|...+|.+.++......+
T Consensus 430 gdl-~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 430 NDL-PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred CCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 999 9999999999999999999999999999999999999999987766543
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.3e-14 Score=125.13 Aligned_cols=391 Identities=13% Similarity=0.099 Sum_probs=240.8
Q ss_pred hhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcC--CHH-------------------------HHHHHhccCCCC
Q 012504 12 LSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSI--SLH-------------------------FTRSLFNNLPVT 63 (462)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~--~~~-------------------------~A~~~~~~~~~~ 63 (462)
+++.+..+.-+++.|.+.|.+.+..+--.|+ +...|. ++- -|.-+|+-.|
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P-- 204 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP-- 204 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC--
Confidence 3478888888999999999999999888887 333333 111 1222233333
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHH
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLL 143 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (462)
.+..+|..||.++++-...+.|.++|++......+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 3555677777777777667777777777666656666677777666533222 256666677666777777777777
Q ss_pred HHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHh-HH
Q 012504 144 RMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRA-GE 222 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~ 222 (462)
.+..+.|+++.|.+ .|.+++.+|++.|+.|...+|..++..+++.++..+ +.
T Consensus 281 ~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 281 SCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 66666666655433 345667777778888888888777777777666533 44
Q ss_pred HHHHHHHHh----CC----CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC--------C---hhhHHHHHHHHHHcCC
Q 012504 223 SIHSYAVVN----GL----ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK--------N---LQSWTIMISGLADNGR 283 (462)
Q Consensus 223 ~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---~~~~~~l~~~~~~~~~ 283 (462)
.++.++... .+ +.+...|...+..|.+..+.+-|.++-.-+... + ..-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 11 223445566677777777777777766655431 1 1235566677777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-CH-------
Q 012504 284 GNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG-LI------- 355 (462)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~------- 355 (462)
.+.....++.|.-.-+-|+..+...++++....+.++-.-++|..+..- |...+...-.-+...+++.. +.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 7888888888877767777777777888777777777777777777653 43333333333333333322 11
Q ss_pred -HH-----HHHHHHh-------CC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCCCchHH---HHHHH
Q 012504 356 -EE-----AYHIIRN-------MP-TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE---PELGANYV---LAASV 415 (462)
Q Consensus 356 -~~-----A~~~~~~-------~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~---~l~~~ 415 (462)
.. |..+++. +. .+-.....+...-.+.+.|.. ++|-+++....+.+ |..+ ..+ .+...
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~-qkA~e~l~l~~~~~~~ip~~p-~lnAm~El~d~ 570 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRT-QKAWEMLGLFLRKHNKIPRSP-LLNAMAELMDS 570 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchH-HHHHHHHHHHHhcCCcCCCCc-chhhHHHHHHH
Confidence 00 1111111 11 123445566666667788888 88888888876543 4333 333 34444
Q ss_pred HhhcCCHHHHHHHHHHHhcCCCc
Q 012504 416 SSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
-.+.+..-.|...++-|...+..
T Consensus 571 a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHhcCCHHHHHHHHHHHHHcCch
Confidence 45667777888888877665544
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.3e-14 Score=134.61 Aligned_cols=269 Identities=12% Similarity=0.036 Sum_probs=170.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHC---CCCCCH------HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCch
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLA---NESPNS------VTLVSLVSACTSLINVRAGESIHSYAVVNGLELD 236 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 236 (462)
.+...|.+...+...|++.+|...|...... ...+|. .+-..+....-..++.+.|.+.|..+.+.. +.-
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~Y 529 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGY 529 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chh
Confidence 3444555555555555555555555554433 111121 122233334444455555555555555542 222
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQT-GLKPDSISFSAILSA 312 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~ 312 (462)
+..|-.++......+...+|...+....+ .++..+..+...+.....+..|.+-|+...+. ...+|+++...|...
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 33333333333334555566666665543 35556666666777777777777766665544 123566666666654
Q ss_pred hhc------------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHH
Q 012504 313 CSH------------LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE--PNAVILRSFL 378 (462)
Q Consensus 313 ~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~ 378 (462)
|.. .+..+.|+++|.++.+ .-+.|...-+-+.-.++..|++.+|..+|..+... ....+|-.+.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 432 3456788888888876 44566777788888889999999999999888642 3567888899
Q ss_pred HHHHHcCChHHHHHHHHHHHHhc--CCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKL--EPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+|...|++ ..|.++|+...+. ..+++.+...|+.++.+.|.+.+|.+.+.......+.
T Consensus 688 h~~~e~~qy-~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 688 HCYVEQGQY-RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 999999999 9999999998874 3456678889999999999999999988877665543
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=2.3e-14 Score=124.57 Aligned_cols=399 Identities=12% Similarity=0.080 Sum_probs=271.9
Q ss_pred hhHHHHHHHHHHHhCCCCchhhhhhHh--hhhhcCCHHHHHHHh----ccCCCC---CCcccHHHHHHHHHhCCCchhHH
Q 012504 16 VHHLHQLHTLFLKTSLDHNTCIISRFI--LTSLSISLHFTRSLF----NNLPVT---PPLFAYNTLIRAYAKTSCSIESI 86 (462)
Q Consensus 16 ~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~~~~~A~~~~----~~~~~~---~~~~~y~~li~~~~~~g~~~~a~ 86 (462)
..+|...++.+++...-|+.....--+ +.-...++.+|.+++ ++.|.- --....+.+.-.|.+.|.++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 456667777777766666665443333 111112667777665 344321 11234555566788899999999
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccc--------hHhHHHHHHHhcCCh------
Q 012504 87 KLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKY--------IGNTLLRMYAACKEI------ 152 (462)
Q Consensus 87 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~------ 152 (462)
..|+...+. .|+..+--.++-++.-.|+-++..+.|..|+.....||.. .-..|+.--.+...+
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 999998875 5777665566666677899999999999988754333222 112233322222221
Q ss_pred -----hHHHHHHhcCC----CCChh-------------hHHH--------HHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 153 -----DVAKAVFEEMP----VRDVV-------------SWSS--------MIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 153 -----~~A~~~~~~~~----~~~~~-------------~~~~--------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
++++-.--++. .|+-. .+.. -...+.+.|+++.|+++++-+.+..-+.-+
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 22221111221 22110 0111 123478899999999998877654322111
Q ss_pred HHHHHH--H----------------------------------HHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHH
Q 012504 203 VTLVSL--V----------------------------------SACTSLINVRAGESIHSYAVVNGLELDVALGTALVEM 246 (462)
Q Consensus 203 ~~~~~l--~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (462)
..-+.| + +.....|++++|...|++.+...-......|| +.-.
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt 533 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLT 533 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hccc
Confidence 111111 0 01123578888888888888765333333444 4555
Q ss_pred HHhcCChHHHHHHHhhcc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 012504 247 YSKCGHVEKAFKVFNLMR---EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGK 323 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 323 (462)
+-..|++++|++.|-++. ..+..+.-.+...|-...+..+|++++.+.... ++.|+.....|...|-+.|+-.+|.
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhh
Confidence 778899999999988776 357777788888999999999999998877664 5557788999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhc
Q 012504 324 NYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP-TEPNAVILRSFLGAC-RNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~~~a~~~~~~~~~~ 401 (462)
+.+-.--+ -++.+..+...|..-|....-+++++.+|++.. .+|+..-|..++..| .+.|++ +.|..+++...+.
T Consensus 613 q~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny-qka~d~yk~~hrk 689 (840)
T KOG2003|consen 613 QCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY-QKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHh
Confidence 88766554 567789999999999999999999999999874 479999999888766 578999 9999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCC
Q 012504 402 EPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 402 ~p~~~~~~~~l~~~~~~~g~ 421 (462)
.|.+..++..|.+.+...|.
T Consensus 690 fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccchHHHHHHHHHhccccc
Confidence 99999999999998887775
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=8.5e-14 Score=130.96 Aligned_cols=330 Identities=15% Similarity=0.107 Sum_probs=239.1
Q ss_pred hhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhc---CCCCChhhHHHHHHHHHcCCChhHHH
Q 012504 111 CGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEE---MPVRDVVSWSSMIAGFVACDSPSDAL 187 (462)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (462)
+.-.|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-- +...|...|..+.....+.|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334488888888888888775 34666778888888888888887766543 33456777888888888888888888
Q ss_pred HHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH----HHHHHHHHhcCChHHHHHHHhhc
Q 012504 188 KVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG----TALVEMYSKCGHVEKAFKVFNLM 263 (462)
Q Consensus 188 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~ 263 (462)
-+|.+..+.. +++...+..-...|-+.|+...|...+.++.....+.+..-+ ...+..+...++-+.|.+.+...
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888887763 445555555666777888888888888888776532232222 23455566666667777777766
Q ss_pred cC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------------CCCCCHHHHHHHHH
Q 012504 264 RE-----KNLQSWTIMISGLADNGRGNYAISLFAKMIQT---------------------------GLKPDSISFSAILS 311 (462)
Q Consensus 264 ~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------------------~~~p~~~~~~~ll~ 311 (462)
.. -+...++.++..|.+...++.+......+... ++.++...+ .+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 54 23456777888888888888888777776651 122222221 2223
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCC
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKP--TMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE---PNAVILRSFLGACRNHGQ 386 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 386 (462)
++.+.+..+....+...+... .+.| +...|..+.++|...|++.+|+.+|..+... .+...|..+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 344555555555555655554 5444 4788999999999999999999999998654 246689999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCCccce
Q 012504 387 VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSW 445 (462)
Q Consensus 387 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 445 (462)
. +.|.+.+++++...|++.++...|+..+.+.|+.++|.++++.+.-.+....++..|
T Consensus 465 ~-e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 465 Y-EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred H-HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9 999999999999999999999999999999999999999999887444333344444
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=4.1e-17 Score=144.11 Aligned_cols=256 Identities=14% Similarity=0.080 Sum_probs=112.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 012504 172 SMIAGFVACDSPSDALKVFHRMKLANESPNS-VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC 250 (462)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (462)
.+...+.+.|++++|++++++......+|+. ..+..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 3455667778888888888654443223433 334445555667788888888888888765 3356667777777 688
Q ss_pred CChHHHHHHHhhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 012504 251 GHVEKAFKVFNLMRE--KNLQSWTIMISGLADNGRGNYAISLFAKMIQTG-LKPDSISFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 251 ~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
+++++|.+++....+ +++..+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 889999888877643 456677788888999999999999999987643 34567778888888999999999999999
Q ss_pred HHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 328 EMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 328 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
+..+. .| |......++..+...|+.+++.++++.... +.++..+..+..++...|+. +.|..+++++.+..|+
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~-~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY-EEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H-HHHHHHHHHHHHHSTT
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc-cccccccccccccccc
Confidence 99874 45 477888899999999999998777776632 34556778899999999999 9999999999999999
Q ss_pred CCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 405 LGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
|+.....++.++...|+.++|.++.++.-
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987654
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.4e-13 Score=127.16 Aligned_cols=382 Identities=11% Similarity=0.024 Sum_probs=225.6
Q ss_pred CHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCC--CCcchHHHHHHHhhhhcCchhHHHHH
Q 012504 49 SLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR--PDNFTYPFVVKACGRCLLIGIGGSVH 124 (462)
Q Consensus 49 ~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~ 124 (462)
.+..+..++.+.- ..-++...+.|.+.|.-.|++..++.+...+...... .-...|-.+.+++...|++++|..+|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4555555554432 1157778888999999999999999999998875311 12345778888999999999999999
Q ss_pred HHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCC----ChhHHHHHHHHhHHCC
Q 012504 125 SLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACD----SPSDALKVFHRMKLAN 197 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~ 197 (462)
-+..+....--...+-.|...+.+.|+++.+...|+.+.. .+..+...|...|...+ ..+.|..++.+..+.-
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 8877764332234556788999999999999999999873 24566667777776664 4566777776666542
Q ss_pred CCCCHHHHHHHHHHHhcccchHhHHHHHHH----HHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC-------
Q 012504 198 ESPNSVTLVSLVSACTSLINVRAGESIHSY----AVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK------- 266 (462)
Q Consensus 198 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 266 (462)
+.|...|..+...+....-+ .+...+.. +...+-++.+...|.+...+...|++++|...|......
T Consensus 411 -~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred -cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 44666776666665443333 33554443 334555677788888888888888888888888766521
Q ss_pred Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHH--------
Q 012504 267 NL------QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFDEMAR-------- 331 (462)
Q Consensus 267 ~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~-------- 331 (462)
+. .+--.+...+-..++++.|.+.|...... .|+-. .|..++......+...+|...++....
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence 11 11222334444445555555555555543 22221 222222122223444444444444443
Q ss_pred --------------------------hcCCCCchhHHHHHHHHHHh------------cCCHHHHHHHHHhCCC--CCCH
Q 012504 332 --------------------------VYNIKPTMEHYGCMVDMLGR------------AGLIEEAYHIIRNMPT--EPNA 371 (462)
Q Consensus 332 --------------------------~~~~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~--~~~~ 371 (462)
.....+|..+.-.|...|.+ .+..++|+++|..+.. +.+.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 21222333333333333221 1234455555554422 2234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
..-+.+..+++..|++ ..|..+|.++.+-..+.+.+|..++.+|..+|+|..|++.|+...++
T Consensus 647 yAANGIgiVLA~kg~~-~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRF-SEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred hhccchhhhhhhccCc-hHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555666 66666666655544445556666666666666666666666654443
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=7.9e-12 Score=113.82 Aligned_cols=429 Identities=8% Similarity=0.019 Sum_probs=311.4
Q ss_pred HHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccC-------CC----------------C
Q 012504 8 TLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNL-------PV----------------T 63 (462)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~-------~~----------------~ 63 (462)
..|.....++.|+.++....+. ++.+..+|-.-- +-...|+.+...+++++- +. .
T Consensus 414 lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 3444455678888888877654 455555554443 334445555555555332 00 0
Q ss_pred CCccc---------------------HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHH
Q 012504 64 PPLFA---------------------YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGS 122 (462)
Q Consensus 64 ~~~~~---------------------y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 122 (462)
.++.| |+.-...|.+.+.++-|..+|...++-- +-+...|......=-..|..+....
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHH
Confidence 22223 3333333444555555666666665532 2244455544444445677777777
Q ss_pred HHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCC
Q 012504 123 VHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANES 199 (462)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 199 (462)
+++.++..- +-....|-.....+-..|++..|..++...-+ .+...|..-+..-....++++|..+|.+.... .
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 777777663 33445556666667778888888888877653 35667888888888889999999999888774 5
Q ss_pred CCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHHHH
Q 012504 200 PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIMIS 276 (462)
Q Consensus 200 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 276 (462)
|+...|..-+..-.-.+..++|.+++++.++.- +.-...|..+.+.+-+.++.+.|.+.|..-.+ | .+..|-.+..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 777777666666666788999999998888763 55567888889999999999999988887665 3 3467888878
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHH
Q 012504 277 GLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIE 356 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (462)
.--+.|++-.|..++++.+-++.. +...|...++.-.+.|..+.|..++.+..+ ..+.+...|..-|....+.++-.
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence 778888999999999999887643 677888889999999999999999999887 56677888888888888888877
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 357 EAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 357 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.....+++... |+.+.-.+...+....++ +.|...|+++.+.+|+..++|.-+-..+.+.|.-++-.+++.......
T Consensus 805 ks~DALkkce~--dphVllaia~lfw~e~k~-~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 805 KSIDALKKCEH--DPHVLLAIAKLFWSEKKI-EKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHhccC--CchhHHHHHHHHHHHHHH-HHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 88888887763 556666777888888999 999999999999999999999999999999999999999999887654
Q ss_pred CccCCccceEEECC
Q 012504 437 LNKVPGCSWVKVND 450 (462)
Q Consensus 437 ~~~~~~~~~~~~~~ 450 (462)
|..+..|.-+.+
T Consensus 882 --P~hG~~W~avSK 893 (913)
T KOG0495|consen 882 --PTHGELWQAVSK 893 (913)
T ss_pred --CCCCcHHHHHhh
Confidence 455666655543
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.4e-13 Score=127.14 Aligned_cols=218 Identities=11% Similarity=-0.034 Sum_probs=140.7
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchH-------hHHHHHHHHHH
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDV-------ALGTALVEMYS 248 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 248 (462)
.+...|+++.|...++++.+.. +-+......+...+.+.|+++++..++..+.+.+..++. ..|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444432 223334444444444555555555555555444322111 12223333333
Q ss_pred hcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 012504 249 KCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
...+.+...++++.+.+ .++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHH
Confidence 44455666666666643 46677788888888999999999999888874 4444222 23344456888889998
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 326 FDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.+...+ ..+-|+..+..+.+.+.+.+++++|.+.|+.... .|+...+..+...+...|+. ++|.+++++...+
T Consensus 317 ~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~-~~A~~~~~~~l~~ 390 (398)
T PRK10747 317 LRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKP-EEAAAMRRDGLML 390 (398)
T ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhh
Confidence 888886 3345567788888999999999999999988754 58888888888899999999 9999999888764
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6.8e-13 Score=116.65 Aligned_cols=354 Identities=16% Similarity=0.090 Sum_probs=244.2
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC-cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCc-cchHhHHHHHH
Q 012504 69 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSD-KYIGNTLLRMY 146 (462)
Q Consensus 69 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 146 (462)
+-....-|.++|++++|++.|.+.++ ..|| +..|.....+|...|+++++.+.-...++.+ |+ ...+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 34455678889999999999999988 4678 7788888888999999999887766666543 32 22334444455
Q ss_pred HhcCChhHHHH----------------------HHhc---------CC---C---CChhhHHHHHHHHHc----------
Q 012504 147 AACKEIDVAKA----------------------VFEE---------MP---V---RDVVSWSSMIAGFVA---------- 179 (462)
Q Consensus 147 ~~~~~~~~A~~----------------------~~~~---------~~---~---~~~~~~~~l~~~~~~---------- 179 (462)
-..|++++|+. +++. +. . |+.....+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 55566555432 1111 01 1 111111111111100
Q ss_pred ---------------CC---ChhHHHHHHHHhHH---CCCCC---CH------HHHHHHHHHHhcccchHhHHHHHHHHH
Q 012504 180 ---------------CD---SPSDALKVFHRMKL---ANESP---NS------VTLVSLVSACTSLINVRAGESIHSYAV 229 (462)
Q Consensus 180 ---------------~~---~~~~a~~~~~~m~~---~~~~p---~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 229 (462)
.+ .+.+|...+.+-.. ..... |. .+...-...+.-.|+.-.+..-++..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 01 12222222221100 00001 11 111111122334577788888888888
Q ss_pred HhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHH
Q 012504 230 VNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSIS 305 (462)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~ 305 (462)
+... .+...|-.+..+|....+.++.++.|++..+ .|+.+|..-.+.+.-.+++++|..-|++.++. .| +...
T Consensus 354 ~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~ 430 (606)
T KOG0547|consen 354 KLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYA 430 (606)
T ss_pred hcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHH
Confidence 7753 3333477778889999999999999998875 46678888888888999999999999999875 44 4557
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---------CHHHHH
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP---------NAVILR 375 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~---------~~~~~~ 375 (462)
|..+..+..+.+.++++...|++..+ .++..+.+|+...+.+...+++++|.+.|+.... .| .+.+-.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 77777777889999999999999988 5666789999999999999999999999988632 22 233334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 376 SFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 376 ~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.++..-.+ +++ ..|..+++++.+++|.....+..|+....+.|+.++|+++|++-.
T Consensus 509 a~l~~qwk-~d~-~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 509 ALLVLQWK-EDI-NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hHhhhchh-hhH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444334 889 999999999999999999999999999999999999999998754
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=3.7e-13 Score=124.41 Aligned_cols=275 Identities=9% Similarity=-0.004 Sum_probs=212.8
Q ss_pred cCChhHHHHHHhcCCCC--Chh-hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHH--HHHHHHhcccchHhHHH
Q 012504 149 CKEIDVAKAVFEEMPVR--DVV-SWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLV--SLVSACTSLINVRAGES 223 (462)
Q Consensus 149 ~~~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 223 (462)
.|+++.|++.+...... ++. .|........+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999988876543 233 3333345558899999999999999874 56654333 33567889999999999
Q ss_pred HHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh-----------hhHHHHHHHHHHcCChHHHHHHHH
Q 012504 224 IHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL-----------QSWTIMISGLADNGRGNYAISLFA 292 (462)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~ 292 (462)
.++.+.+.. +.++.....+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999887 66788899999999999999999999999886322 133344444445556666777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-C
Q 012504 293 KMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-N 370 (462)
Q Consensus 293 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~ 370 (462)
.+.+. .+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+.... .| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3446778888899999999999999999998763 4554322 23344456999999999988743 34 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+.....+...|...+++ ++|...|+.+.+..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~-~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEW-QEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677889999999999 999999999999999876 677899999999999999999997644
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=3.5e-15 Score=131.82 Aligned_cols=257 Identities=12% Similarity=0.059 Sum_probs=90.2
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCC-cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhc
Q 012504 71 TLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAAC 149 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (462)
.+...+.+.|++++|+++++.......+|+ ...|..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 446677788888888888866544432333 334444444556677888888888888776533 55556666666 677
Q ss_pred CChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCC-CCCCHHHHHHHHHHHhcccchHhHHHHHH
Q 012504 150 KEIDVAKAVFEEMPV--RDVVSWSSMIAGFVACDSPSDALKVFHRMKLAN-ESPNSVTLVSLVSACTSLINVRAGESIHS 226 (462)
Q Consensus 150 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 226 (462)
+++++|.++++..-+ ++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888777766532 355566677777777888888888887765432 23456666677777777888888888888
Q ss_pred HHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 012504 227 YAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS 303 (462)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 303 (462)
+..+.. |.+..+...++..+...|+.+++.+++....+ .++..+..+..+|...|+.++|...|++....+ +.|+
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 877775 44566777777777777777776666655542 355666777777777777777777777776642 2356
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
.....+..++...|+.++|..+..++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666777777777777777777666543
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=7e-13 Score=115.56 Aligned_cols=185 Identities=14% Similarity=0.068 Sum_probs=133.2
Q ss_pred cCChHHHHHHHhhccCCChhhHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 250 CGHVEKAFKVFNLMREKNLQSWTIM---ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
.|++++|.+.|++....|...-.+| .-.+-..|+.++|++.|-++..- +..+......+...|....+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4667777777777766655433333 33456677888888887776543 2335566677777787788888888888
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 327 DEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM-PT-EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
.+... -++.|+.+...|.+.|-+.|+-..|.+.+-+- .. +-+..+..-|..-|....=+ ++++.+|+++.-++|+
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~-ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFS-EKAINYFEKAALIQPN 658 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHH-HHHHHHHHHHHhcCcc
Confidence 77754 45556888888889999999888888765443 22 33555555565556666556 9999999999999998
Q ss_pred CCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 405 LGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
...-...++.++.+.|++++|+.+|+...++-+.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 8766667778888999999999999998776544
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=6.5e-11 Score=108.03 Aligned_cols=401 Identities=12% Similarity=0.010 Sum_probs=289.0
Q ss_pred HHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCC
Q 012504 20 HQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 97 (462)
Q Consensus 20 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 97 (462)
..|+++.++. ++.++..|.+.+ . ..+.++|+.++.+.-+- .+...| -++++..-++.|..+++..++. +
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAV--e-lE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~-i 436 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAV--E-LEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREI-I 436 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHH--h-ccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-C
Confidence 3444444433 344555665555 2 23444566666554321 222222 3444555566777777777764 5
Q ss_pred CCCcchHHHHHHHhhhhcCchhHHHHHHHHH----HhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC------CCh
Q 012504 98 RPDNFTYPFVVKACGRCLLIGIGGSVHSLIF----KVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV------RDV 167 (462)
Q Consensus 98 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~ 167 (462)
+-+...|.+....=-..|+.+...+++...+ ..|+..+...|-.=...|-..|..-.+..+...... .-.
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 5566667665555566677777777665543 346666666666666666666666666666655541 134
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMY 247 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (462)
.+|+.-...|.+.+.++-|..+|....+- .+-+...|......=-..|..+....+++++...- +.....|......+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 57888888888888888899999888774 23355567666666666788888899999888874 55667777788888
Q ss_pred HhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 012504 248 SKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKN 324 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 324 (462)
...|+...|..++....+. +...|..-+.....+.+++.|..+|.+.... .|+...|..-+..-.-.++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 8999999999999888753 4467888888899999999999999998875 5666666665555566789999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 012504 325 YFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
++++..+. ++.-...|..+.+.+-+.++.+.|.+.|..-.. -|+ ...|-.|...--+.|+. ..|..++++..-.+
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~-~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL-VRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch-hhHHHHHHHHHhcC
Confidence 99998873 344477888899999999999999999887643 354 56777777777788888 99999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 403 PELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 403 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
|.+...|...+.+-.+.|+.+.|..+..+..+.-
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998877666543
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=1.2e-12 Score=121.72 Aligned_cols=223 Identities=13% Similarity=0.015 Sum_probs=136.1
Q ss_pred HHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhH-------HHHHHHH
Q 012504 174 IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVAL-------GTALVEM 246 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~ 246 (462)
...+...|+++.|...++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+..+.... +..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554432 22333444455555555555555555555555443222211 1111111
Q ss_pred HHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHhhccCcHH
Q 012504 247 YSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSIS--F-SAILSACSHLGLVD 320 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~ll~~~~~~~~~~ 320 (462)
-......+...+.++...+ .++..+..+...+...|++++|.+.+++..+.. ||... + ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 1112223444445555443 367788888888999999999999999988863 33321 1 11112234457788
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRN--M-PTEPNAVILRSFLGACRNHGQVLYLDDNLGKL 397 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 397 (462)
.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+. ++|.+++++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~-~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDK-AEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Confidence 88888888876422222225667888999999999999999993 3 3468888888999999999999 999999998
Q ss_pred HHh
Q 012504 398 LLK 400 (462)
Q Consensus 398 ~~~ 400 (462)
...
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 765
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.1e-12 Score=109.53 Aligned_cols=300 Identities=14% Similarity=0.082 Sum_probs=209.9
Q ss_pred cCChhHHHHHHhcCCCCChhh---HHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH------HHHHHHHHHHhcccchH
Q 012504 149 CKEIDVAKAVFEEMPVRDVVS---WSSMIAGFVACDSPSDALKVFHRMKLANESPNS------VTLVSLVSACTSLINVR 219 (462)
Q Consensus 149 ~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~ 219 (462)
+++.++|.+.|-+|.+.|..+ .-+|.+.|.+.|..++|+++-+.+..+ ||. .....|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 466777777777776554443 345667777777777777777776653 222 12334555667777788
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh--------hhHHHHHHHHHHcCChHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL--------QSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+-+. ..|.-+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8888888777655 44455667788888888888888888777665332 24556666667788899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN 370 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~ 370 (462)
.+..+.+.+ ....-..+.+.....|+++.|.+.|+.+.+. +..--..+...|..+|...|+.++...++.++.. .+.
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 998876432 2223344556778889999999999999876 4444467788899999999999999999988643 345
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh---hcCCHHHHHHHHHHHhcCCCccCCccceEE
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSS---LSGNWDTAAELMVAINQKGLNKVPGCSWVK 447 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 447 (462)
...-..+...-....-. +.|...+.+-++..|.-- .+..++.... .-|+..+-+..++.|+..-++..|.+....
T Consensus 282 ~~~~l~l~~lie~~~G~-~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 282 ADAELMLADLIELQEGI-DAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred ccHHHHHHHHHHHhhCh-HHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 55555555544555556 788888888888788755 4444444332 346788888999999988888888888888
Q ss_pred ECCeEEEEe
Q 012504 448 VNDGSAEEM 456 (462)
Q Consensus 448 ~~~~~~~~~ 456 (462)
.+...|.++
T Consensus 360 CGF~a~~l~ 368 (389)
T COG2956 360 CGFTAHTLY 368 (389)
T ss_pred cCCcceeee
Confidence 887777764
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=5.8e-12 Score=117.19 Aligned_cols=278 Identities=10% Similarity=-0.009 Sum_probs=175.6
Q ss_pred HhcCChhHHHHHHhcCCC--CC-hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH--HHHHHHHHHhcccchHhH
Q 012504 147 AACKEIDVAKAVFEEMPV--RD-VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV--TLVSLVSACTSLINVRAG 221 (462)
Q Consensus 147 ~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a 221 (462)
...|+++.|.+.+.+..+ |+ ...+-.......+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 356777777777766653 22 223344456677778888888888887654 24432 333346667778888888
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHH----HHHHHHHHcCChHHHHHHHHHH
Q 012504 222 ESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWT----IMISGLADNGRGNYAISLFAKM 294 (462)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~m 294 (462)
...++.+.+.. |-+..+...+..++...|++++|.+.+..+.+. +...+. ....+....+..++..+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888776 556667778888888888888888888877743 222221 1112223333333334444444
Q ss_pred HHCCC---CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhH-HHHHHHH--HHhcCCHHHHHHHHHhCCC-
Q 012504 295 IQTGL---KPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEH-YGCMVDM--LGRAGLIEEAYHIIRNMPT- 367 (462)
Q Consensus 295 ~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~~~~~~A~~~~~~~~~- 367 (462)
.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... ...++.. ....++.+.+.+.++....
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44321 126667777777888888888888888888764 233221 0012222 2334677777777766532
Q ss_pred CCC-H--HHHHHHHHHHHHcCChHHHHHHHHH--HHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHH
Q 012504 368 EPN-A--VILRSFLGACRNHGQVLYLDDNLGK--LLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 368 ~~~-~--~~~~~l~~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
.|+ + ....++...+.+.|++ ++|.+.|+ ...+..|++. .+..++..+.+.|+.++|.+++++.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~-~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEF-IEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccH-HHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233 3 4556777888888888 88888888 4555666655 4668888888888888888888764
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.3e-13 Score=124.22 Aligned_cols=278 Identities=12% Similarity=0.042 Sum_probs=218.1
Q ss_pred ChhHHHHHHhcCCC--CC-hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCC--CCCHHHHHHHHHHHhcccchHhHHHHH
Q 012504 151 EIDVAKAVFEEMPV--RD-VVSWSSMIAGFVACDSPSDALKVFHRMKLANE--SPNSVTLVSLVSACTSLINVRAGESIH 225 (462)
Q Consensus 151 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~ 225 (462)
+..+|...|+.++. +| ......+..+|...+++++|.++|+.+.+... .-+..+|.+.+-.+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46788889988653 23 34556778899999999999999999977421 1256677777654422 1222222
Q ss_pred -HHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 012504 226 -SYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL---QSWTIMISGLADNGRGNYAISLFAKMIQTGLKP 301 (462)
Q Consensus 226 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 301 (462)
+.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+-|+ .+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 3344433 66789999999999999999999999999987554 67888888889999999999999988753 34
Q ss_pred CHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 012504 302 DSI-SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSF 377 (462)
Q Consensus 302 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l 377 (462)
..+ .|..+...|.++++++.|+-.|+.+. .+.|. ......+...+.+.|+.++|+++++++.. +.++..-..-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 332 56667778999999999999999998 45554 66677788889999999999999999732 3455554455
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
+..+...++. ++|...++++.+..|++..++..++..|.+.|+.+.|+.-|--+-+.++++
T Consensus 564 ~~il~~~~~~-~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRY-VEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6778899999 999999999999999999999999999999999999999888776655543
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=7e-11 Score=103.85 Aligned_cols=413 Identities=11% Similarity=0.068 Sum_probs=293.6
Q ss_pred HhhcChhHHHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCC-CCCCcccHHHHHHHHHhCCCchhHHHHH
Q 012504 11 QLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLP-VTPPLFAYNTLIRAYAKTSCSIESIKLF 89 (462)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~-~~~~~~~y~~li~~~~~~g~~~~a~~~~ 89 (462)
..+..+..|+.+++..+..=.+.|-.-|..+.+-.+.|++..|+++|++.- -.|+..+|++.|..=.+-+.++.|..+|
T Consensus 118 mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IY 197 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIY 197 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344677888999998887766667666666656678889999999998754 4499999999999999999999999999
Q ss_pred HHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHh-CC-CCccchHhHHHHHHHhcCChhHHHHHHhcCCC---
Q 012504 90 DEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKV-GL-DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--- 164 (462)
Q Consensus 90 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 164 (462)
+..+- +.|+..+|.-..+.=.+.|....+..+|+.+++. |- ..+...+.+....=.++..++.|.-+|+-...
T Consensus 198 erfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 198 ERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred HHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99886 4689999988888888899999999999988764 21 11223344444444556777888877765442
Q ss_pred -C-ChhhHHHHHHHHHcCCChhHHHHH--------HHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC
Q 012504 165 -R-DVVSWSSMIAGFVACDSPSDALKV--------FHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234 (462)
Q Consensus 165 -~-~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (462)
. ....|..+...--+-|+.....+. |+.+.+.+ +-|-.++--.++.-...|+.+...++|+..+..- +
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-p 353 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-P 353 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-C
Confidence 1 234454444443444554444333 33344432 4566677777777777899999999999988764 4
Q ss_pred chH--hHHHHHH--------HHHHhcCChHHHHHHHhhccC--C-Chhh----HHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 235 LDV--ALGTALV--------EMYSKCGHVEKAFKVFNLMRE--K-NLQS----WTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 235 ~~~--~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~--~-~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
|-. ..|...| -.-....+.+.+.++|+...+ | ...| |-...+.-.++.+...|.+++...+
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 422 1222222 112346788888888887765 2 2233 4444555667889999999988776
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HH
Q 012504 298 GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNA----VI 373 (462)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~ 373 (462)
|.-|-..+|...|..-.+.++++.+..++++... -.+.+..+|......=...|+.+.|..+|+-+..+|.. ..
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 4578888898888888899999999999999985 33446778888888788899999999999988776643 35
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh-----hcC-----------CHHHHHHHHHHHh
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSS-----LSG-----------NWDTAAELMVAIN 433 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~ 433 (462)
|.+.|..-...|.+ +.|..+++++++..+-.. +|.+.+..-. ..| +...|..+|+...
T Consensus 510 wkaYIdFEi~~~E~-ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEF-EKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhhhhhhhcchH-HHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 56666666778999 999999999998765544 6666665544 334 5667778887654
No 43
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=7.3e-12 Score=108.51 Aligned_cols=327 Identities=13% Similarity=0.077 Sum_probs=171.4
Q ss_pred chhhhhhHh-hhhhcCCHHHHHHHhccCCCC---CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHH
Q 012504 34 NTCIISRFI-LTSLSISLHFTRSLFNNLPVT---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVK 109 (462)
Q Consensus 34 ~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 109 (462)
...++..+| .-..|.+.+.|++++++.... -+..+||.+|.+-.-. ...+++.+|....+.||..|||.+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 344555555 112334666666666555432 4555566655543322 12556666666666666666666666
Q ss_pred HhhhhcCchhH----HHHHHHHHHhCCCCccchHhHHHHHHHhcCChhH-HHHHHhcCC------------CCChhhHHH
Q 012504 110 ACGRCLLIGIG----GSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDV-AKAVFEEMP------------VRDVVSWSS 172 (462)
Q Consensus 110 ~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~------------~~~~~~~~~ 172 (462)
+.++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++. ..|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 66666655433 3455556666666666666666666666555533 222222221 113344555
Q ss_pred HHHHHHcCCChhHHHHHHHHhHHCC----CCCCH---HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 173 MIAGFVACDSPSDALKVFHRMKLAN----ESPNS---VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
.+..|.+..+.+.|.++-.-+.... +.|+. .-|..+....+.....+.....|+.|+-.-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 5555555666665555544332210 22221 2344455555555566666666666665555555556666666
Q ss_pred HHHhcCChHHHHHHHhhccCCCh----hhHHHHHHHHHHcC---------------------ChHHHHHHHHHHHHCCCC
Q 012504 246 MYSKCGHVEKAFKVFNLMREKNL----QSWTIMISGLADNG---------------------RGNYAISLFAKMIQTGLK 300 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~---------------------~~~~a~~~~~~m~~~~~~ 300 (462)
+....|.++-.-+++.++..-+- ..-.-+...+++.. -.+.....-.+|+...+
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~- 520 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW- 520 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC-
Confidence 66666666655555555543221 11111122222221 01111122233444333
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 301 PDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 301 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
.....+.++..+.+.|..++|.+++..+.+..+--|- .....-+++.-.+.++...|...++-|.
T Consensus 521 -~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 521 -PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred -ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4445566666678888889999888888654333333 3334456666677788888888888774
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1e-11 Score=103.77 Aligned_cols=274 Identities=15% Similarity=0.121 Sum_probs=163.2
Q ss_pred cHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCc---cchHhHHHH
Q 012504 68 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSD---KYIGNTLLR 144 (462)
Q Consensus 68 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 144 (462)
.|-.-++.+. +.+.++|+++|-+|.+.+.. +..+.-++-+.+.+.|..++|+.+...+.++.--+. ......|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 4544444443 56889999999999875322 344555666778888999999998888776521111 123445666
Q ss_pred HHHhcCChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH----HHHHHHHHHhcccc
Q 012504 145 MYAACKEIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV----TLVSLVSACTSLIN 217 (462)
Q Consensus 145 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~ 217 (462)
-|...|-+|.|+.+|..+.+. -..+...|+..|.+..+|++|+++-+++.+.+-.+... .|..+...+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 777888888888888888753 23456677788888888888888888777765444322 23444444555566
Q ss_pred hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh----hhHHHHHHHHHHcCChHHHHHHHHH
Q 012504 218 VRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL----QSWTIMISGLADNGRGNYAISLFAK 293 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (462)
++.|...+....+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|.+.|+.++....+.+
T Consensus 196 ~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666666666554 33334444456666666666666666666665544 2445555666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 012504 294 MIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDML 349 (462)
Q Consensus 294 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (462)
+.+....++ .-..+...-......+.|..++.+-.+. +|+...+..+++.-
T Consensus 275 ~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~ 325 (389)
T COG2956 275 AMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhh
Confidence 665422222 2222222222233334444443333322 46665665555544
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.2e-11 Score=104.95 Aligned_cols=285 Identities=13% Similarity=0.077 Sum_probs=162.1
Q ss_pred HHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC------ChhhHHHHHHHHHcCC
Q 012504 108 VKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR------DVVSWSSMIAGFVACD 181 (462)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~ 181 (462)
..++....+.+++.+-.+.....|.+.+...-+....+.-...|+++|+.+|+++... |..+|..++- .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 3445555566666666666666666555555555555555666777777777776642 4445555442 2222
Q ss_pred ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHh
Q 012504 182 SPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFN 261 (462)
Q Consensus 182 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 261 (462)
+.. +..+..-...--+--+.|...+.+-|+-.++.++|...|+..++.+ +....+|+.+..-|....+...|++-++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 111 1111111100012233455666666666667777777777776665 4455666666777777777777777776
Q ss_pred hccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc
Q 012504 262 LMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT 338 (462)
Q Consensus 262 ~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 338 (462)
...+- |-..|-.+.++|.-.+.+.-|+-.|++...- .+-|...+..|..+|.+.++.++|++.|+..... -..+
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte 465 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTE 465 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccc
Confidence 66543 4456666777777777777777777766653 1224556777777777777777777777766652 2334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC------CCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT------EPNA---VILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
...+..|.+.|-+.++..+|...|+.... ..+. ...--|..-+.+.+++ ++|..+.......
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~-~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF-DEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch-HHHHHHHHHHhcC
Confidence 55666677777777777777666654321 1111 1111233445556666 6555555444443
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=3.9e-11 Score=103.43 Aligned_cols=287 Identities=10% Similarity=0.034 Sum_probs=181.0
Q ss_pred CCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHH
Q 012504 79 TSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAV 158 (462)
Q Consensus 79 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 158 (462)
.|+|.+|.++..+-.+.+-.| ...|..-..+..+.|+.+.+-.++.++.+....++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655544332 2233344444555566666666555555543333444444444445555555555444
Q ss_pred HhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCc
Q 012504 159 FEEMP---VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLEL 235 (462)
Q Consensus 159 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (462)
++++. ..++.......++|.+.|++.....++..+.+.|.-.++..- ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence 44333 224444445555555555555555555555554433222210 01
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhcc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMR---EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA 312 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 312 (462)
...+|..+++-....+..+.-...++... +.++..-.+++.-+.+.|+.++|.++.++..+++..|+. . ..-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHHh
Confidence 12344555555555555555555666665 346777778888899999999999999999998777762 2 2234
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM-PTEPNAVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~a 391 (462)
+.+.++.+.-++..+...+.++- ++..+..|...|.+.+.|.+|.+.|+.. ...|+..+|..+..++.+.|+. ..|
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~-~~A 380 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP-EEA 380 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh-HHH
Confidence 66778888888888877774444 4478888999999999999999999876 4468999999999999999999 999
Q ss_pred HHHHHHHHhc
Q 012504 392 DNLGKLLLKL 401 (462)
Q Consensus 392 ~~~~~~~~~~ 401 (462)
.+..++.+.+
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7.2e-11 Score=103.49 Aligned_cols=255 Identities=8% Similarity=-0.004 Sum_probs=185.4
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCC--CchHhHHHHHHHHHHhcCCh
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGL--ELDVALGTALVEMYSKCGHV 253 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 253 (462)
++....+.++++.-.+.....|++.+...-+....+.-...|+++|+.+|+++.+... -.|..+|..++-+-..+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 4444455666666666666666544444444444444566677777777777776631 11345555444322221111
Q ss_pred HHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc
Q 012504 254 EKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVY 333 (462)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 333 (462)
.--....-.+.+-.+.|...+.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|..-++...+
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 11111111222334456666677788889999999999999986422 355788888889999999999999999986
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 334 NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
--+.|-..|-.|.++|.-.+...-|+-.|++... +.|+..|.+|..+|.+.++. ++|+..|..+...+-.+...+..
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~-~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL-EEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH-HHHHHHHHHHHhccccchHHHHH
Confidence 3355788999999999999999999999999854 56889999999999999999 99999999999987777789999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhc
Q 012504 412 AASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
|+..|.+.++.++|.+.+++.++
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.2e-12 Score=119.55 Aligned_cols=281 Identities=12% Similarity=0.043 Sum_probs=201.1
Q ss_pred CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC------CChhhHHHHHHHHHcCCChhHHHHH
Q 012504 116 LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV------RDVVSWSSMIAGFVACDSPSDALKV 189 (462)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~ 189 (462)
+..+|...|..+-.+ +.-+..+...+..+|...+++++|+++|+.+.. .+...|.+.+-.+.+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 445667777763333 333446666777788888888888888887763 266677777654432 122233
Q ss_pred HHH-hHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh
Q 012504 190 FHR-MKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL 268 (462)
Q Consensus 190 ~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (462)
+.+ +... -+-.+.+|..+.++|.-+++.+.|++.|++..+.. +-...+|+.+..-+.....+|+|...|+.....++
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 322 2222 24466788888888888888888888888888764 33677888888888888889999999998888777
Q ss_pred hhHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 012504 269 QSWTI---MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCM 345 (462)
Q Consensus 269 ~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 345 (462)
..|++ +...|.+.++++.|.-.|+++.+-+.. +.+....+...+.+.|+.++|+++++++... -+-|+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 65544 567788899999999999888875432 4556666777788888999999999988753 12234444445
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
+..+...+++++|+..++++.. +.+..++..+...|.+.|+. +.|..-|-.+.+++|.-..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~-~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT-DLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc-hHHHHhhHHHhcCCCccch
Confidence 6667788899999999988854 33566777788889999999 9999999999998887543
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.1e-10 Score=104.89 Aligned_cols=415 Identities=9% Similarity=-0.055 Sum_probs=282.5
Q ss_pred cChhHHHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCC-CCCCcccHHHHHHHHHhCCCchhHHHHHHH-
Q 012504 14 KTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLP-VTPPLFAYNTLIRAYAKTSCSIESIKLFDE- 91 (462)
Q Consensus 14 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~-~~~~~~~y~~li~~~~~~g~~~~a~~~~~~- 91 (462)
.+...|.-+-+++...+..|+-.-|-.-.+ ...++.+.|..+...-. ...|..+.......+.+..++++|..++..
T Consensus 30 ~~y~~a~f~adkV~~l~~dp~d~~~~aq~l-~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~ 108 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLTNDPADIYWLAQVL-YLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRG 108 (611)
T ss_pred HhhhHHHHHHHHHHhccCChHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456666666777766666665555444431 22236666665554332 126777888888889999999999999882
Q ss_pred ---HHHC-------C--CCCCcch----HHHH-----H--HHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHh
Q 012504 92 ---MLKT-------G--LRPDNFT----YPFV-----V--KACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAA 148 (462)
Q Consensus 92 ---m~~~-------g--~~p~~~~----~~~l-----l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (462)
+..- + +.+|..- -+.- + ..|....++++|...|.+.....+.-. ..+..++....-
T Consensus 109 ~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~-Ea~~~lvs~~ml 187 (611)
T KOG1173|consen 109 HVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF-EAFEKLVSAHML 187 (611)
T ss_pred chhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH-HHHHHHHHHHhc
Confidence 2110 0 1111111 0011 1 113334556677766666554432211 111111111110
Q ss_pred ------------------cCChhHHHHHHhcCC--------------------CCChhhHHHHHHHHHcCCChhHHHHHH
Q 012504 149 ------------------CKEIDVAKAVFEEMP--------------------VRDVVSWSSMIAGFVACDSPSDALKVF 190 (462)
Q Consensus 149 ------------------~~~~~~A~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~ 190 (462)
..+.+..+..|+-.. +.++.....-..-+...+++.+..++.
T Consensus 188 t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit 267 (611)
T KOG1173|consen 188 TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKIT 267 (611)
T ss_pred chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHh
Confidence 011111222222110 113344444555677789999999999
Q ss_pred HHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh--
Q 012504 191 HRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL-- 268 (462)
Q Consensus 191 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 268 (462)
+...+.. ++....+..-|.++...|+..+-..+-..+++.- |..+.+|-++.--|...|+.++|.+.|.+...-|.
T Consensus 268 ~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f 345 (611)
T KOG1173|consen 268 EELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF 345 (611)
T ss_pred HHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc
Confidence 9988763 5666666666778888899888888888888764 66788999999999999999999999999876443
Q ss_pred -hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 269 -QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 269 -~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
..|-.+..+|.-.|..++|+..+..+-+.- +-....+--+.--|.+.++.+.|.++|.+... -.+.|+.+.+-+.-
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgv 422 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGV 422 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhh
Confidence 689999999999999999999998887641 11111222233347788999999999999974 33445778888877
Q ss_pred HHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 348 MLGRAGLIEEAYHIIRNMPT--------EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
.....+.+.+|..+|+.... .+ ..++++.|..+|.+.+.+ ++|+..+++++.+.|.++.++.+++.+|..
T Consensus 423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~-~eAI~~~q~aL~l~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY-EEAIDYYQKALLLSPKDASTHASIGYIYHL 501 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH-HHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 77788999999999987631 12 467789999999999999 999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCC
Q 012504 419 SGNWDTAAELMVAINQKG 436 (462)
Q Consensus 419 ~g~~~~A~~~~~~~~~~~ 436 (462)
.|+++.|+..|.+..-..
T Consensus 502 lgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKALALK 519 (611)
T ss_pred hcChHHHHHHHHHHHhcC
Confidence 999999999998765433
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=3.5e-11 Score=103.67 Aligned_cols=280 Identities=11% Similarity=0.063 Sum_probs=211.5
Q ss_pred cCChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHH
Q 012504 149 CKEIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIH 225 (462)
Q Consensus 149 ~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 225 (462)
.|++.+|++...+-.+. ....|..-.++..+.|+.+.+-.++.+..+..-.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 58888888888775532 344565666777788888888888888877433445555666667778888888888888
Q ss_pred HHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh-----------hhHHHHHHHHHHcCChHHHHHHHHHH
Q 012504 226 SYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL-----------QSWTIMISGLADNGRGNYAISLFAKM 294 (462)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m 294 (462)
.++.+.+ +-++.+......+|.+.|++.....++..+.+.+. .+|..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 55677788888899999999999999888886432 36777777777777777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHH
Q 012504 295 IQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAV 372 (462)
Q Consensus 295 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 372 (462)
..+ .+-++..-..++.-+...|+.++|.++..+..+. +..|+... + -...+-++.+.-++..+.... +.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCR---L-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHH---H-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 654 4556667777888889999999999999999887 66666222 2 234455665555544444311 23447
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.+.+|...|.+++.+ .+|...|+.+.+..|+.. .|..++.++.+.|+..+|.+..++....-.
T Consensus 330 L~~tLG~L~~k~~~w-~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 330 LLSTLGRLALKNKLW-GKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHHHhhHH-HHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 888899999999999 999999999999888755 899999999999999999999988764433
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=1e-10 Score=110.60 Aligned_cols=356 Identities=10% Similarity=0.023 Sum_probs=253.1
Q ss_pred HHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhH
Q 012504 75 AYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDV 154 (462)
Q Consensus 75 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (462)
.....|+.++|.+++.+.++..+. ....|-+|...|-..|+.+++...+-.+-... +-|...|..+.....+.|+++.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 344459999999999999887543 67788899999999999988887766555444 3456788888888899999999
Q ss_pred HHHHHhcCCCCChh---hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH----HHHHHHHHHhcccchHhHHHHHHH
Q 012504 155 AKAVFEEMPVRDVV---SWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV----TLVSLVSACTSLINVRAGESIHSY 227 (462)
Q Consensus 155 A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 227 (462)
|.-+|.+..+.++. .+---...|.+.|+...|...|.++.....+.|.. ....++..+...++-+.|.+.+..
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999988754333 33344567888999999999999988864222222 222345556666777888888877
Q ss_pred HHHh-CCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC----CCh----------------------hhH----HHHHH
Q 012504 228 AVVN-GLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE----KNL----------------------QSW----TIMIS 276 (462)
Q Consensus 228 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----------------------~~~----~~l~~ 276 (462)
.... +-..+...++.++..+.+...++.+......+.. +|. .+| -.++-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 6662 2244566778888888988888888877766542 111 011 12333
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 277 GLADNGRGNYAISLFAKMIQTGLKP--DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
++.+.+..+....+.......++.| +...|.-+..++...|++.+|..+|..+... ...-+..+|..+.++|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhh
Confidence 4445555555555555556665444 3457888899999999999999999999865 223346789999999999999
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---------CCCCchHHHHHHHHhhcCCHH
Q 012504 355 IEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE---------PELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 355 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~g~~~ 423 (462)
++.|.+.|+.+.. .| +...--.|...+.+.|+. ++|.+.++.+..-+ +.+..........+...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~-EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNH-EKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCH-HHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 9999999998743 33 455556677788999999 88888888765322 122345566778888999999
Q ss_pred HHHHHHHHHhc
Q 012504 424 TAAELMVAINQ 434 (462)
Q Consensus 424 ~A~~~~~~~~~ 434 (462)
+-+.+-..|+.
T Consensus 544 ~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 544 EFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHH
Confidence 87777666654
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=5e-10 Score=98.59 Aligned_cols=380 Identities=14% Similarity=0.080 Sum_probs=266.7
Q ss_pred CHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSL 126 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 126 (462)
++..|+.+|++.-.. .+...|-.-+..=.++.++..|..+++..+..=+..|..-|. .+-.=-..|++..|.++|+.
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHHHHH
Confidence 777888899876432 566667777788888899999999999988753333333332 22223456899999999988
Q ss_pred HHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH-
Q 012504 127 IFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP--VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV- 203 (462)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~- 203 (462)
-.+. .|+...|++.|+.=.+-+.++.|..++++.. .|++.+|-....--.+.|+...+..+|+...+. -.|..
T Consensus 167 W~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~ 242 (677)
T KOG1915|consen 167 WMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEE 242 (677)
T ss_pred HHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHH
Confidence 7764 7889999999999999999999999999876 688888888888888899999999999887663 12333
Q ss_pred ---HHHHHHHHHhcccchHhHHHHHHHHHHhCCCch--HhHHHHHHHHHHhcCChHHHHHHH--------hhccCC---C
Q 012504 204 ---TLVSLVSACTSLINVRAGESIHSYAVVNGLELD--VALGTALVEMYSKCGHVEKAFKVF--------NLMREK---N 267 (462)
Q Consensus 204 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~~---~ 267 (462)
.|.+...-=.++..++.|.-+|+..+..- +.+ ...|..+...--+-|+........ +.+.+. |
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 23333333345567788888888887763 333 445555555545556544433332 222233 3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHh---hccCcHHHHHHHHHHHHHhcCCCC
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI-------SFSAILSAC---SHLGLVDEGKNYFDEMARVYNIKP 337 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 337 (462)
-.+|--.+..-...|+.+...++|++++.. ++|-.. .|.-+=-+| ....+.+.+.++|+...+ -++.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 456777777777788999999999988875 444221 121111111 246788888888888875 4444
Q ss_pred chhHHHHHHHH----HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHH
Q 012504 338 TMEHYGCMVDM----LGRAGLIEEAYHIIRNM-PTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLA 412 (462)
Q Consensus 338 ~~~~~~~l~~~----~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 412 (462)
...|+.-+--+ -.++.+...|.+++... +..|...+|...|..-.+.+++ +....++++.++.+|.+..+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef-DRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF-DRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH-HHHHHHHHHHHhcChHhhHHHHHH
Confidence 45555544333 34677888888888765 4458888888888888888888 888888888888888888888888
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 413 ASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+..-...|+++.|..+|+-.++...-
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 88888888888888888877765543
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=7.9e-11 Score=108.72 Aligned_cols=231 Identities=15% Similarity=0.178 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHh-----C-CCchH-hHHHHHHHHHHhcCChHHHHHHHhhccC--------C
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVN-----G-LELDV-ALGTALVEMYSKCGHVEKAFKVFNLMRE--------K 266 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~ 266 (462)
..+...+...|...|+++.|+..+++.++. | ..|.. ...+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356777888999999999999999887765 2 12333 3445578899999999999999998863 1
Q ss_pred C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcC--
Q 012504 267 N---LQSWTIMISGLADNGRGNYAISLFAKMIQT-----GL-KPDSI-SFSAILSACSHLGLVDEGKNYFDEMARVYN-- 334 (462)
Q Consensus 267 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 334 (462)
+ ..+++.|..+|.+.|++++|...+++..+- |. .|... .++.+...|...+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 257888889999999999998888876532 22 22322 456677778899999999999988766533
Q ss_pred CCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 335 IKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT---------EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 335 ~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+.++ ..+++.|...|...|++++|.++++++.. .+ ....++.+...|.+.+++ ..|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~-~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY-EEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc-chHHHHHHHHHH
Confidence 2222 56789999999999999999999998732 12 245677788899999999 999999998765
Q ss_pred ----cCCCCC---chHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 401 ----LEPELG---ANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 401 ----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.+|+.+ .+|..|+..|.+.|+++.|+++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 355554 568899999999999999999998775
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=4.5e-11 Score=102.91 Aligned_cols=198 Identities=10% Similarity=0.017 Sum_probs=152.5
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA 312 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 312 (462)
....+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345666677777788888888888777653 234567777788888888888888888887763 2345566777777
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
+...|++++|...+++.......+.....+..+...+...|++++|...+++... +.+...+..+...+...|++ +.
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY-KD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH-HH
Confidence 8888899999998888876422223355677788888899999999999988643 23466777888889999999 99
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 391 DDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
|...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999998888888888888888999999999999988877543
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=7.6e-13 Score=82.28 Aligned_cols=50 Identities=40% Similarity=0.755 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhh
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR 113 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 113 (462)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998864
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=1.4e-09 Score=102.86 Aligned_cols=214 Identities=11% Similarity=0.015 Sum_probs=137.2
Q ss_pred HHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCC---CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCC
Q 012504 21 QLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVT---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 96 (462)
Q Consensus 21 ~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 96 (462)
..+.++...|+.|+..+|.+++ .+...|+++.|- +|.-|..+ -+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 4677888899999999999999 444455777666 66655432 23334555555555555554443
Q ss_pred CCCCcchHHHHHHHhhhhcCchhHHHH---HHHHHH----hCC-----------------CCccchHhHHHHHHHhcCCh
Q 012504 97 LRPDNFTYPFVVKACGRCLLIGIGGSV---HSLIFK----VGL-----------------DSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 97 ~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~----~~~-----------------~~~~~~~~~l~~~~~~~~~~ 152 (462)
.|.+.||..+..+|...||+..-..+ ++.+.. .|+ -||. ...+....-.|-+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLW 155 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHH
Confidence 45555666666666666554332111 111111 111 0111 1112222223333
Q ss_pred hHHHHHHhcC---------------------------------C-CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCC
Q 012504 153 DVAKAVFEEM---------------------------------P-VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANE 198 (462)
Q Consensus 153 ~~A~~~~~~~---------------------------------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 198 (462)
+.+.+++..+ . .+++.+|.+++..-...|+.+.|..++.+|++.|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 3333333222 2 26788899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 199 SPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 199 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
+.+.+-|-.++-+ .++...++.++.-|...|+.|+..|+...+..+..+|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9998888777765 78888889999999999999999998877766666443
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.9e-09 Score=90.04 Aligned_cols=268 Identities=7% Similarity=-0.009 Sum_probs=140.9
Q ss_pred CCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHH---HHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 012504 132 LDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWS---SMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL 208 (462)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 208 (462)
++.|......+.+++...|+.++|+..|+....-|+.+.. ...-.+.+.|+.+....+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 3444555566666666666666666666665533322211 11222345566666555555554321 1122222222
Q ss_pred HHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChH
Q 012504 209 VSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGN 285 (462)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 285 (462)
.......+++..|..+-++.++.. +-+...+-.-..++...|+.++|.-.|+.... -+..+|.-|+.+|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 222334455555555555555443 33344444445556666666666666655442 24566666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHh-hccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHH
Q 012504 286 YAISLFAKMIQTGLKPDSISFSAIL-SAC-SHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHII 362 (462)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 362 (462)
+|..+-+..... ++.+..+.+.+. ..| .....-++|.++++.-. .+.|+ ....+.+...+...|..++++.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 666655554433 233444444442 222 22233455666666554 23444 344455556666666666666666
Q ss_pred HhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 363 RNMP-TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 363 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++.. ..||....+.|...+...+.+ +++...|..+++++|.+.
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~-Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEP-QKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhH-HHHHHHHHHHHhcCccch
Confidence 6543 246666666666666666666 666666666666666654
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=2.1e-10 Score=108.22 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=51.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 012504 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCM 345 (462)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 345 (462)
+++.+|...+..-...|+.+.|..++.+|++.|++.+.+-|..++-+ .++...++.+++-|... |+.|+..|+...
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHH
Confidence 56666666666666666666666666666666666666655555533 55555666666666554 666666666655
Q ss_pred HHHHHhcC
Q 012504 346 VDMLGRAG 353 (462)
Q Consensus 346 ~~~~~~~~ 353 (462)
+..+.+.|
T Consensus 278 vip~l~N~ 285 (1088)
T KOG4318|consen 278 VIPQLSNG 285 (1088)
T ss_pred HHhhhcch
Confidence 55554433
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=3.7e-09 Score=93.65 Aligned_cols=345 Identities=11% Similarity=-0.019 Sum_probs=233.4
Q ss_pred CHHHHHHHhccCCCC-CC-cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc-chHHHHHHHhhhhcCchhHHH---
Q 012504 49 SLHFTRSLFNNLPVT-PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-FTYPFVVKACGRCLLIGIGGS--- 122 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~-~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~--- 122 (462)
.+++|.+.+.+.-.. |+ ..-|.....+|...|+|++..+.-...++. .|+- -.+..-.+++-..|++++++.
T Consensus 130 kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALFDVT 207 (606)
T ss_pred cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence 888999988765433 77 777888899999999999988887777763 3332 223333344444555554431
Q ss_pred -------------------HHHHH--------HH-hC--CCCccchHhHHHHHHHhc--------C-----ChhHHHHHH
Q 012504 123 -------------------VHSLI--------FK-VG--LDSDKYIGNTLLRMYAAC--------K-----EIDVAKAVF 159 (462)
Q Consensus 123 -------------------~~~~~--------~~-~~--~~~~~~~~~~l~~~~~~~--------~-----~~~~A~~~~ 159 (462)
++... .+ .+ +-|+....++....+... + .+.++.+.+
T Consensus 208 v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l 287 (606)
T KOG0547|consen 208 VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEAL 287 (606)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHH
Confidence 11111 11 11 122222222222222110 0 122222222
Q ss_pred hcCC--------------------CC-----Ch------hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 012504 160 EEMP--------------------VR-----DV------VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL 208 (462)
Q Consensus 160 ~~~~--------------------~~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 208 (462)
..-. .+ |. .+...-.--+.-.|+...|..-|+..++....++. .|-.+
T Consensus 288 ~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~ 366 (606)
T KOG0547|consen 288 EKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKR 366 (606)
T ss_pred HhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHH
Confidence 2221 01 11 11111112244568999999999999886533333 26677
Q ss_pred HHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChH
Q 012504 209 VSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGN 285 (462)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 285 (462)
...|....+.++..+.|+...+.+ +.++.+|..-...+.-.+++++|..-|++...- +...|-.+..+.-+.++++
T Consensus 367 a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 367 AAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999887 667888888888899999999999999998864 4456777777777889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---------hhHHHHHHHHHHhcCCHH
Q 012504 286 YAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT---------MEHYGCMVDMLGRAGLIE 356 (462)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~ 356 (462)
++...|++.+.+ ++-.+..|+.....+..+++++.|.+.|+..... .|+ +.+-..++..-. .+++.
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~ 520 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHLIIVNAAPLVHKALLVLQW-KEDIN 520 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---ccccccccccchhhhhhhHhhhch-hhhHH
Confidence 999999999987 4445678999999999999999999999998753 333 222223332222 38999
Q ss_pred HHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 357 EAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 357 ~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
.|.++++...+ .| ....+..|...-.+.|+. ++|+++|++...+-.
T Consensus 521 ~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i-~eAielFEksa~lAr 568 (606)
T KOG0547|consen 521 QAENLLRKAIELDPKCEQAYETLAQFELQRGKI-DEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHH
Confidence 99999999854 33 456788899999999999 999999999887644
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=4.7e-10 Score=96.52 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMY 247 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (462)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555556666666666666666655432 2233444455555555555555555555555443 22333444444445
Q ss_pred HhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 248 SKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
...|++++|.+.+++ .......| ....+..+...+...|++++|...+
T Consensus 110 ~~~g~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQ-------------------------------AIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHcccHHHHHHHHHH-------------------------------HHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555544 44321111 1223333444445555555555555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 327 DEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.+.... .+.+...+..+...+...|++++|...+++... +.+...+..+...+...|+. +.|..+.+.+.+.
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~ 232 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDV-AAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhh
Confidence 555432 122234444555555555555555555554321 22333444444455555555 5555555544443
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=7.2e-09 Score=96.84 Aligned_cols=404 Identities=14% Similarity=0.045 Sum_probs=254.0
Q ss_pred HHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC-cc
Q 012504 27 LKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NF 102 (462)
Q Consensus 27 ~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ 102 (462)
...-+.-|..+|.++- .....|+++.+-+.|++...- .....|+.+...+...|.-..|+.+++.-......|+ +.
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3334556778888877 556667888888888775421 4556688888888888888889988888765443343 33
Q ss_pred hHHHHHHHhh-hhcCchhHHHHHHHHHHh--CC--CCccchHhHHHHHHHhc-----------CChhHHHHHHhcCCCC-
Q 012504 103 TYPFVVKACG-RCLLIGIGGSVHSLIFKV--GL--DSDKYIGNTLLRMYAAC-----------KEIDVAKAVFEEMPVR- 165 (462)
Q Consensus 103 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~- 165 (462)
.+...-..|. +.+..+++..+..+++.. +. ......|..+.-+|... ....++.+.+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333343 346677777777766652 11 11223333333333321 1234566777776432
Q ss_pred --ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHH
Q 012504 166 --DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTAL 243 (462)
Q Consensus 166 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 243 (462)
|+.+...+.--|+-.++.+.|.+..++..+.+-.-+...|..+.-.+...+++..|+.+.+.....- ..|......-
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 3333333334466778889999998888887656778888888888888889988888887665431 1111111111
Q ss_pred HHHHHhcCChHHHHHHHhhccC-------------------------------CC-hhhHHHHHHHHHHcCChHHHHHHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMRE-------------------------------KN-LQSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~-------------------------------~~-~~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
+..-..-++.+++......+.. .+ +.++..+..- .. -+...+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-~a-~~~~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-VA-SQLKSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-HH-hhhhhccccc
Confidence 2222223444444333222210 00 1111111111 11 0000000000
Q ss_pred HHHHHCCCC--CCH------HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 012504 292 AKMIQTGLK--PDS------ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 292 ~~m~~~~~~--p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
. +...-+. |+. ..+......+.+.+..++|...+.+..+ ..+-....|......+...|.+++|.+.|.
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0 1111112 221 1233445567788889999988888865 345557788888888999999999999998
Q ss_pred hCCC--CCCHHHHHHHHHHHHHcCChHHHHHH--HHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 364 NMPT--EPNAVILRSFLGACRNHGQVLYLDDN--LGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 364 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.... +.++.+..++...+.+.|+. ..+.. ++..+.+.+|.++..|..++.++.+.|+.++|...|....+...
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~-~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSP-RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCc-chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 7632 44578889999999999998 88888 99999999999999999999999999999999999998887653
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=8.2e-10 Score=106.87 Aligned_cols=258 Identities=12% Similarity=-0.046 Sum_probs=183.7
Q ss_pred ChhhHHHHHHHHHc-----CCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHh---------cccchHhHHHHHHHHHH
Q 012504 166 DVVSWSSMIAGFVA-----CDSPSDALKVFHRMKLANESPN-SVTLVSLVSACT---------SLINVRAGESIHSYAVV 230 (462)
Q Consensus 166 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 230 (462)
+...|...+.+-.. .+++++|...|++..+. .|+ ...+..+..++. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666655322 23467999999998875 454 445555544433 23457899999999998
Q ss_pred hCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012504 231 NGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFS 307 (462)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 307 (462)
.. +.+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|...+++..+.... +...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 86 56778888899999999999999999999875 3 3567888899999999999999999999986433 222333
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHHc
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAV-ILRSFLGACRNH 384 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~ 384 (462)
.++..+...|++++|...++++... .+| ++..+..+..++...|++++|...+.++.. .|+.. ..+.+...|...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3444566678999999999998763 234 455677788889999999999999998754 34433 344455556666
Q ss_pred CChHHHHHHHHHHHHhc---CCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 385 GQVLYLDDNLGKLLLKL---EPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
| +.+...++++.+. .|.++ ..+...|.-.|+.+.+... +++.+.+
T Consensus 489 g---~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S---ERALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H---HHHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 5 4566666666653 34443 2266677778888877776 8777654
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=8.7e-11 Score=98.46 Aligned_cols=229 Identities=12% Similarity=0.027 Sum_probs=185.5
Q ss_pred HHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHHHHHHHHc
Q 012504 205 LVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIMISGLADN 281 (462)
Q Consensus 205 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 281 (462)
-..+..+|.+.|.+.+|++.++..++. .|-+.+|..|-.+|.+..+++.|+.+|.+-.+ | ++....-+.+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 345777888888888888888887776 46667777888889998999999988888765 3 333344566777888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 012504 282 GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHI 361 (462)
Q Consensus 282 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 361 (462)
++.++|.++++...+.. +.+......+...|.-.++++-|..+|+++.+. |. .++..|+.+.-+|.-.++++-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 89999999999888762 335556666777788889999999999999886 54 4567888888889999999999888
Q ss_pred HHhCCC---CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 362 IRNMPT---EP--NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 362 ~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
|++... .| -..+|..+.......|++ ..|.+.|+-++..+|++...++.|+-.-.+.|++++|..++.......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~-nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDF-NLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccch-HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 877632 23 367899999999999999 999999999999999999999999999999999999999999887765
Q ss_pred Ccc
Q 012504 437 LNK 439 (462)
Q Consensus 437 ~~~ 439 (462)
+..
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 443
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1e-10 Score=98.01 Aligned_cols=236 Identities=13% Similarity=0.111 Sum_probs=200.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 012504 170 WSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSK 249 (462)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (462)
-+.+..+|.+.|-+.+|.+.|+...+. .|-+.||..+-.+|.+..++..|..++.+-++.- +.++.........+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 367889999999999999999988774 6788899999999999999999999999888763 6666666778899999
Q ss_pred cCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 250 CGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
.++.++|.++|+...+. ++.+...+...|.-.++++-|+..++++.+.|+. ++..|+.+.-+|.-.+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988753 5666777778889999999999999999999976 7788888888999999999999999
Q ss_pred HHHHHhcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 012504 327 DEMARVYNIKPT--MEHYGCMVDMLGRAGLIEEAYHIIRNMPTE--PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 327 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
.+.... --.|+ ..+|..+.......|++..|.+.|+-.... .....++.|...-.+.|++ +.|..++..+....
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i-~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI-LGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch-HHHHHHHHHhhhhC
Confidence 888764 33344 678888998899999999999999987542 4567899998888999999 99999999999999
Q ss_pred CCCCchHHH
Q 012504 403 PELGANYVL 411 (462)
Q Consensus 403 p~~~~~~~~ 411 (462)
|+-......
T Consensus 460 P~m~E~~~N 468 (478)
T KOG1129|consen 460 PDMAEVTTN 468 (478)
T ss_pred ccccccccc
Confidence 986554433
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=9.2e-12 Score=77.37 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=43.8
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 012504 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH 315 (462)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 315 (462)
||+.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888899999999999999999999999988999999999999888864
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.2e-09 Score=93.93 Aligned_cols=269 Identities=12% Similarity=0.034 Sum_probs=193.4
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcC
Q 012504 71 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACK 150 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 150 (462)
.-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-.-+-..+++.- +..+.+|-++.--|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 33445566788888888888887763 4566667777778888888877777777777764 445677777777777778
Q ss_pred ChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHH
Q 012504 151 EIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSY 227 (462)
Q Consensus 151 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (462)
..++|.+.|.+...- -...|-.+...|.-.|..++|+..|...-+. ++.....+.-+..-|.+.++++.|.+.|.+
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888876643 3457888888888888888888888776553 223333344455567778888888888888
Q ss_pred HHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC----------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 228 AVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK----------NLQSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
..... |.|+.+.+-+.-.....+.+.+|..+|+....+ -..+++.|..+|.+.+.+++|+..+++....
T Consensus 406 A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 87764 667777787877777788888888888776521 1235677777888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 298 GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
. +-+..++..+.-.|...|+++.|...|.+.. .+.|+-.+...++.
T Consensus 485 ~-~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 485 S-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLK 530 (611)
T ss_pred C-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHH
Confidence 2 3466777777777777888888888887776 66777655555554
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=1e-09 Score=97.29 Aligned_cols=228 Identities=11% Similarity=-0.039 Sum_probs=149.3
Q ss_pred cCCChhHHHHHHHHhHHCC-CCCC--HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHH
Q 012504 179 ACDSPSDALKVFHRMKLAN-ESPN--SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEK 255 (462)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (462)
..+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3466677888887777532 2222 3456677777888899999988888888875 5567888888888999999999
Q ss_pred HHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 256 AFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 256 a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
|...|++..+ | +..+|..+...+...|++++|.+.|++..+. .|+..........+...++.++|...+.+...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 9988888764 3 3467777888888889999999999888875 34332222222223456778888888876554
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHH--HHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 333 YNIKPTMEHYGCMVDMLGRAGLIE--EAYHIIRNM-PTE-----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
..+|+...+ .+.. ...|+.. ++.+.+.+. ... .....|..+...+...|+. ++|...|+++.+.+|.
T Consensus 194 -~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~-~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 -KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL-DEAAALFKLALANNVY 268 (296)
T ss_pred -hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCc
Confidence 333433222 2322 2344443 333333322 111 1235677888888888998 9999999998888864
Q ss_pred C-CchHHHHHHH
Q 012504 405 L-GANYVLAASV 415 (462)
Q Consensus 405 ~-~~~~~~l~~~ 415 (462)
+ +.....++..
T Consensus 269 ~~~e~~~~~~e~ 280 (296)
T PRK11189 269 NFVEHRYALLEL 280 (296)
T ss_pred hHHHHHHHHHHH
Confidence 4 3333334433
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=1.3e-09 Score=105.53 Aligned_cols=226 Identities=13% Similarity=-0.040 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHh-----cccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh---------cCChHHHHHHHhhccCC
Q 012504 201 NSVTLVSLVSACT-----SLINVRAGESIHSYAVVNGLELDVALGTALVEMYSK---------CGHVEKAFKVFNLMREK 266 (462)
Q Consensus 201 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 266 (462)
+...|...+.+-. ..+++++|...+++..+.. +.+...+..+..+|.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4444444444421 2345788999999998875 4455666666665542 34578999999988753
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHH
Q 012504 267 ---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHY 342 (462)
Q Consensus 267 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 342 (462)
+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+. .|+ ...+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 56788888889999999999999999999874 224567788888899999999999999999864 444 2333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 343 GCMVDMLGRAGLIEEAYHIIRNMPT--EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 343 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
..++..+...|++++|...+++... +| ++..+..+..++...|+. ++|...++++....|.+......++..|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~-~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH-ELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH-HHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 4445556778999999999988742 34 345567778888999999 9999999998888888877788888888888
Q ss_pred CCHHHHHHHHHHHhc
Q 012504 420 GNWDTAAELMVAINQ 434 (462)
Q Consensus 420 g~~~~A~~~~~~~~~ 434 (462)
| ++|...++.+.+
T Consensus 489 g--~~a~~~l~~ll~ 501 (553)
T PRK12370 489 S--ERALPTIREFLE 501 (553)
T ss_pred H--HHHHHHHHHHHH
Confidence 8 478887777654
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=9.1e-08 Score=83.27 Aligned_cols=266 Identities=9% Similarity=-0.002 Sum_probs=197.5
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHH
Q 012504 165 RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV-TLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTAL 243 (462)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 243 (462)
.|+.....+...+...|+.++|+..|++.... .|+.. ....-.-.+...|+.+....+...+.... ..+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 47778888999999999999999999988764 34332 22222233456778888777777776543 2333444444
Q ss_pred HHHHHhcCChHHHHHHHhhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMREKN---LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (462)
+......++++.|+.+-++..+.+ +..+-.-...+...+++++|.-.|+...... +.+...|..|+.+|.-.|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 555566788999999988877644 4455555577889999999999999987642 235679999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHH-HHHH-hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMV-DMLG-RAGLIEEAYHIIRNMP-TEPN-AVILRSFLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~ 396 (462)
+|.-.-+...+ -++.+..+...+. ..+. ....-++|.++++... .+|+ ....+.+...+...|.. +.+..+++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~-~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT-KDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc-chHHHHHH
Confidence 99988887776 4455666665553 3333 3334578999998864 3565 45666777888899999 99999999
Q ss_pred HHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 397 LLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 397 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+.+...|++. ....|+..+...+.+++|++.|....+.++.
T Consensus 463 ~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 9999999876 8899999999999999999999887665544
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=1.5e-09 Score=86.88 Aligned_cols=194 Identities=10% Similarity=0.023 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMREKNL---QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH 315 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 315 (462)
+...|.-.|...|+...|..-+++..+.|+ .+|..+...|.+.|..+.|.+-|++..+... -+....|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHh
Confidence 334455555666666666666655554332 3455555556666666666666665555321 123344444545555
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHH
Q 012504 316 LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
.|++++|...|++.........-..+|..+.-+..+.|+++.|.+.|++... +..+...-.+.......|++ -.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y-~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY-APARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc-hHHHH
Confidence 5566666666665555422222345555555555556666666665555422 12234444455555555555 55555
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 394 LGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+++....-.+.....+...+..-.+.|+.+.+-++=..+.+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555444444555555555555555555554444433
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1.5e-08 Score=93.82 Aligned_cols=200 Identities=12% Similarity=0.142 Sum_probs=126.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHHC-----CC-CC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 172 SMIAGFVACDSPSDALKVFHRMKLA-----NE-SP-NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
.+...|...+++.+|..+|+++... |- .| -..++..|..+|.+.|++++|...++...+.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------- 312 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------- 312 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------
Confidence 4667788889999999988887542 11 11 1234555556666777776666665554432
Q ss_pred HHHHhcCChHHHHHHHhhcc---CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHh
Q 012504 245 EMYSKCGHVEKAFKVFNLMR---EKNL-QSWTIMISGLADNGRGNYAISLFAKMIQT---GLKPD----SISFSAILSAC 313 (462)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~ 313 (462)
++... .+.+ ..++.++..++..+++++|..++++..+. -+.++ ..+++.+...|
T Consensus 313 ---------------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 313 ---------------YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred ---------------HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 11100 0111 12444555566666666666666554432 01111 34777888888
Q ss_pred hccCcHHHHHHHHHHHHHhc----C-CCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHH
Q 012504 314 SHLGLVDEGKNYFDEMARVY----N-IKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMP--------TEPN-AVILRSFL 378 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~-~~~~~~l~ 378 (462)
.+.|++++|+++++.+.... + ..+ ....++.|...|.+.+++++|.++|.+.. ..|+ ..+|..|.
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 88888888888888776542 1 112 24567778888888888888888777652 1344 46788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHh
Q 012504 379 GACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
..|...|++ +.|.++.+.+.+
T Consensus 458 ~~Y~~~g~~-e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNY-EAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccH-HHHHHHHHHHHH
Confidence 999999999 999999888774
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=1.2e-07 Score=89.07 Aligned_cols=412 Identities=12% Similarity=0.051 Sum_probs=250.7
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh--hhhhcCCHHHHHHHhccCCCC-CCcccHHHHHHHHH-h----
Q 012504 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI--LTSLSISLHFTRSLFNNLPVT-PPLFAYNTLIRAYA-K---- 78 (462)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~~~~~A~~~~~~~~~~-~~~~~y~~li~~~~-~---- 78 (462)
.+++..+|+++.|.+.+..-.+ .-+|...+.... .....|+.++|..++..+-.. |+-..|-..+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 4677888888888888866443 344544444443 445567888888888776533 66666555554443 2
Q ss_pred -CCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCc-hhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHH
Q 012504 79 -TSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLI-GIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAK 156 (462)
Q Consensus 79 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 156 (462)
..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+.+.|++ .+++.|-..|......+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 224567778888876643 4444433333233332223 3455666667777754 34555655665444444444
Q ss_pred HHHhcCC------------------CCCh--hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhcc
Q 012504 157 AVFEEMP------------------VRDV--VSWSSMIAGFVACDSPSDALKVFHRMKLANESPN-SVTLVSLVSACTSL 215 (462)
Q Consensus 157 ~~~~~~~------------------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 215 (462)
+++.... .|.. .++..+...|-..|++++|++++++.... .|+ +..|..-.+.+-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 4444431 1222 24566678888999999999999999886 455 56788888999999
Q ss_pred cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh----------hH--HHHHHHHHHcCC
Q 012504 216 INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ----------SW--TIMISGLADNGR 283 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~ 283 (462)
|++.+|...++...... .-|-..-+..+..+.+.|+.++|.+++.....++.. .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999876 556777777888899999999999999888765421 22 334678899999
Q ss_pred hHHHHHHHHHHHHC--CC---C----------CCHHHHHHHHHHhhccC-------cHHHHHHHHHHHHHhcCCCCch--
Q 012504 284 GNYAISLFAKMIQT--GL---K----------PDSISFSAILSACSHLG-------LVDEGKNYFDEMARVYNIKPTM-- 339 (462)
Q Consensus 284 ~~~a~~~~~~m~~~--~~---~----------p~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~-- 339 (462)
+..|++.|....+. .+ + .+..+|..+++..-+.. -...|.++|-.+..........
T Consensus 321 ~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~ 400 (517)
T PF12569_consen 321 YGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQ 400 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 88888766655432 01 1 22333444443221111 1234555555554321100000
Q ss_pred ---------hHHHHHHHHH---HhcCCHHHHHHHHHh-----------C----CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012504 340 ---------EHYGCMVDML---GRAGLIEEAYHIIRN-----------M----PTEPNAVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 340 ---------~~~~~l~~~~---~~~~~~~~A~~~~~~-----------~----~~~~~~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
.--..+..-. .+...-+++...-.. . +.+.|... +..-+.+..++.+.|.
T Consensus 401 ~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A~ 477 (517)
T PF12569_consen 401 EADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEAM 477 (517)
T ss_pred ccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHHH
Confidence 0000111000 111111111111100 0 00111111 2334556777779999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 393 NLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
.+++.+.+..|++..+|..-..+|.+.|++--|++.+..
T Consensus 478 kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 478 KFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 999999999999999999999999999999999987764
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=1.6e-08 Score=89.76 Aligned_cols=192 Identities=14% Similarity=0.044 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD-SISFSAILSAC 313 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~ 313 (462)
..|..+...|...|++++|...|++..+ .+...|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3455556666666666666666665543 23456666666666666666666666666653 232 34555555556
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
...|++++|.+.++...+. .|+..........+...+++++|.+.|++.....+...|. ........|+. ..+ .
T Consensus 143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~-~~~-~ 216 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKI-SEE-T 216 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCC-CHH-H
Confidence 6666666666666666543 2322111111112234455666666664432111111121 11222234444 332 2
Q ss_pred HHHHHH-------hcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 394 LGKLLL-------KLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 394 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.++.+. +..|.....|..++.++...|++++|+..|++..+.++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 333332 23344445666666666666666666666666655543
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=2.1e-08 Score=80.53 Aligned_cols=200 Identities=13% Similarity=0.037 Sum_probs=154.3
Q ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHH
Q 012504 204 TLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLAD 280 (462)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 280 (462)
+...+.-.|...|+...|..-+++.+++. +.+..++..+...|.+.|+.+.|.+.|++..+ .+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34445566777788888888888887775 55667778888888888888888888887664 345678888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 281 NGRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
.|++++|...|++......-|. ..+|..+.-+..+.|+.+.|...|++..+. .+-...+...+.+...+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999998887644443 347888887888889999999999988763 2233567778888888999999999
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 360 HIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 360 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
.+++.... .++..+....|+.-...|+. +.+.++-..+.+..|....
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~-~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDR-AAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCcHH
Confidence 88887643 36777777778888888999 8888888888888887763
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=1.3e-06 Score=80.53 Aligned_cols=422 Identities=13% Similarity=0.081 Sum_probs=236.5
Q ss_pred HHHHHHhhcChhHHHHHHHHHHH-hCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCch
Q 012504 6 IETLIQLSKTVHHLHQLHTLFLK-TSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 83 (462)
+.+++...+++...+..|+..+. ..+.-...+|.-.+ +....+-++.+.+++.+--. -+..+-+--|..+++.++++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-VAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-cCHHHHHHHHHHHHhccchH
Confidence 44555555666666666665443 23444444555555 44555555666666655433 33334566667777777777
Q ss_pred hHHHHHHHHHHCC------CCCCcchHHHHHHHhhhhcCch---hHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhH
Q 012504 84 ESIKLFDEMLKTG------LRPDNFTYPFVVKACGRCLLIG---IGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDV 154 (462)
Q Consensus 84 ~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (462)
+|-+.+...+... .+.+-..|..+-...++..+.- ....+++.+...-...-...|..|.+-|.+.|++++
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 7777776665331 1122333443333333332221 222223332222111112467788888888888888
Q ss_pred HHHHHhcCCCC--ChhhHHHHHHHHHc----------------CC------ChhHHHHHHHHhHHCCC-----------C
Q 012504 155 AKAVFEEMPVR--DVVSWSSMIAGFVA----------------CD------SPSDALKVFHRMKLANE-----------S 199 (462)
Q Consensus 155 A~~~~~~~~~~--~~~~~~~l~~~~~~----------------~~------~~~~a~~~~~~m~~~~~-----------~ 199 (462)
|.++|++.... .+.-|..+...|+. .+ +++-.+.-|+.+...+. +
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 88888776532 12222222222221 11 12222333333332210 1
Q ss_pred CCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCc------hHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh----
Q 012504 200 PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLEL------DVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ---- 269 (462)
Q Consensus 200 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 269 (462)
.++.+|..-+. ...|+..+....+.++.+.- .| -...|..+...|...|+++.|..+|++..+-+-.
T Consensus 347 ~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 347 HNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred ccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 12222322222 23455666677777776541 22 2346788899999999999999999998875433
Q ss_pred ---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 270 ---SWTIMISGLADNGRGNYAISLFAKMIQTGLKP-----------------DSISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 270 ---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-----------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
+|..-...-.++.+++.|+++.++.....-.| +...|...+..-...|-++....+|+.+
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45555555566788889998888775432111 1122333444444567788888888888
Q ss_pred HHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCH-HHHHHHHHHHHH--cCChHHHHHHHHHHHHhcCC
Q 012504 330 ARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT---EPNA-VILRSFLGACRN--HGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~-~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~~p 403 (462)
....-..|.. .....-.+-...-++++.++|++-.. -|++ ..|+..+.-+.+ .|...+.|..+|+++++..|
T Consensus 504 idLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 504 IDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 7653333432 22223334556678999999998643 3554 567776665443 23333999999999999888
Q ss_pred CCC--chHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 404 ELG--ANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 404 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
+.. ..|...+..-.+-|....|++++++.-
T Consensus 582 p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 553 234444555556799999999998753
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.13 E-value=9e-08 Score=89.87 Aligned_cols=283 Identities=13% Similarity=0.092 Sum_probs=164.3
Q ss_pred HHHHhcCChhHHHHHHhcCCCC--C-hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHh------c
Q 012504 144 RMYAACKEIDVAKAVFEEMPVR--D-VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACT------S 214 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~------~ 214 (462)
..+...|++++|++.++.-... | ..........+.+.|+.++|..+|..+.+.+ |+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 3445666677776666554431 3 2334455566667777777777777776653 44444444333332 1
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChH-HHHHHHhhccCCCh-hhHHHHHHHHHHcCChHHHHHHHH
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVE-KAFKVFNLMREKNL-QSWTIMISGLADNGRGNYAISLFA 292 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 292 (462)
..+.+....+++++...- |.......+.-.+.....+. .+..++..+..+++ .+|..+-..|.......-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123455566666665442 22222221211111111222 23334444444444 344444444544444444444444
Q ss_pred HHHHC----C----------CCCCH--HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCH
Q 012504 293 KMIQT----G----------LKPDS--ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLI 355 (462)
Q Consensus 293 ~m~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 355 (462)
..... + -.|+. .++..+...|...|++++|..+.++.... .|+ +..|..-.+.|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 44322 1 12333 24455667778889999999999988753 565 77788888889999999
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CC-------CchHHHHHHHHhhcCCHHH
Q 012504 356 EEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP--EL-------GANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 356 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p--~~-------~~~~~~l~~~~~~~g~~~~ 424 (462)
.+|.+.++.... .-|...=+.....+.+.|+. +.|...+....+.+- .. .......+.+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~-e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRI-EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH-HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999988888754 22344444456667888888 999888888876542 21 1122356888999999999
Q ss_pred HHHHHHHHhc
Q 012504 425 AAELMVAINQ 434 (462)
Q Consensus 425 A~~~~~~~~~ 434 (462)
|++.|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9988876654
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.12 E-value=7e-09 Score=90.57 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=162.8
Q ss_pred HHhcCChhHHHHHHhcCCCC----ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhH
Q 012504 146 YAACKEIDVAKAVFEEMPVR----DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 146 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777765444 2211 2334455667788888776543 4444433 56666666665555544444455
Q ss_pred HHHHHHHHHhCCC-chHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012504 222 ESIHSYAVVNGLE-LDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLK 300 (462)
Q Consensus 222 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 300 (462)
..-+++....... .+.........++...|++++|+++++.. .+.......++.|.+.+|++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444443333322 23333344445677789999999988876 56777778889999999999999999999864 3
Q ss_pred CCHHHHHHHHHHhhc----cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHH
Q 012504 301 PDSISFSAILSACSH----LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVIL 374 (462)
Q Consensus 301 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 374 (462)
.| .+...+..++.. .+.+.+|..+|+++.. ...+++.+.+.+..++...|++++|.+++.+... +.++.+.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 33 444555555433 3468899999999876 5567888899999999999999999999988643 3456777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
..++.+....|+..+.+.+++.++....|+.+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77777777777764678889999998888865
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.10 E-value=2.5e-06 Score=78.81 Aligned_cols=426 Identities=11% Similarity=0.018 Sum_probs=248.2
Q ss_pred cChhHHHHHHHHHHHhC-CCCchhhhhhHhhhhhcCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhHHHHHH
Q 012504 14 KTVHHLHQLHTLFLKTS-LDHNTCIISRFILTSLSISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIESIKLFD 90 (462)
Q Consensus 14 ~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a~~~~~ 90 (462)
++........+.+++.- -.++....--|.+ ...|+-++|......-. ...+-+.|+.+.-.+-...++++|++.|.
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L-~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTL-NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchh-hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 34455555555555432 2222222211112 23457777766654332 12667778888777777888899999998
Q ss_pred HHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC-----C
Q 012504 91 EMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV-----R 165 (462)
Q Consensus 91 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~ 165 (462)
.+...+.. |...+..+--.=++.|+++..........+.. +.....|..++.++.-.|+...|..+++...+ +
T Consensus 100 nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 100 NALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 88875422 44555555544567778877777777766653 22445677777777788888888888877652 3
Q ss_pred ChhhHHHH------HHHHHcCCChhHHHHHHHHhHHCCCCCCHHHH-HHHHHHHhcccchHhHHHHHHHHHHhCCCchHh
Q 012504 166 DVVSWSSM------IAGFVACDSPSDALKVFHRMKLANESPNSVTL-VSLVSACTSLINVRAGESIHSYAVVNGLELDVA 238 (462)
Q Consensus 166 ~~~~~~~l------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 238 (462)
+...+... .......|..+.|++.+..-... ..|...+ .+-...+.+.+++++|..++..++... +.+..
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~ 254 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLD 254 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHH
Confidence 33333222 23445677777777776654332 1222222 234455678888889988888888875 33444
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHhhccCCCh--hhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 239 LGTALVEMYSKC-GHVEKAFKVFNLMREKNL--QSWTIM-ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 239 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~--~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
.|..+..++.+- +..+....+|....+.-+ ..-..+ +.......-.+..-+++..+.++|+++- +..+...|-
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk 331 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHh
Confidence 445555555422 223333355555543111 000000 1111112223445556677777777653 333333333
Q ss_pred ccCcHHHHHHHHHHHH---HhcC----------CCCchhHH--HHHHHHHHhcCCHHHHHHHHHhCCCC-CCH-HHHHHH
Q 012504 315 HLGLVDEGKNYFDEMA---RVYN----------IKPTMEHY--GCMVDMLGRAGLIEEAYHIIRNMPTE-PNA-VILRSF 377 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~---~~~~----------~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~-~~~~~l 377 (462)
.....+-.+++.-.+. ...+ -+|+...| -.++..|-+.|+++.|...++....+ |+. ..|..-
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~K 411 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVK 411 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHH
Confidence 3222221111111111 1001 14554444 45678888999999999999998653 553 344445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc-----CCccceEEEC
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK-----VPGCSWVKVN 449 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~ 449 (462)
.+.+...|+. +.|..+++++.+++..|..+-..-+.-..++++.++|.++....-+.|... +..+.|.++.
T Consensus 412 aRI~kH~G~l-~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 412 ARIFKHAGLL-DEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHhcCCh-HHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 5778899999 999999999999987776455466777789999999999998887665421 3456666553
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.8e-06 Score=76.20 Aligned_cols=403 Identities=10% Similarity=0.041 Sum_probs=207.1
Q ss_pred cChhHHHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHH----HHHHHhCCCchhHHHHH
Q 012504 14 KTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTL----IRAYAKTSCSIESIKLF 89 (462)
Q Consensus 14 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~l----i~~~~~~g~~~~a~~~~ 89 (462)
+++++|.+....++..+..+....+..++..-..+.+++|+.+.+.-+.. .+++.. .-++.+.+..++|+..+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 57888888888888777444444444444111223888888777666531 122222 22344578888888888
Q ss_pred HHHHHCCCCCCcc-hHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCc---------------------------cchHhH
Q 012504 90 DEMLKTGLRPDNF-TYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSD---------------------------KYIGNT 141 (462)
Q Consensus 90 ~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------------------~~~~~~ 141 (462)
+ |..++.. +...-...+-+.|++++|..+|+.+.+++.+.. ..+|..
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL 177 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence 7 3333332 444445557788888888888888866543211 112222
Q ss_pred HHH---HHHhcCChhHHHHHHhcCC--------CCC-----h-----hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCC
Q 012504 142 LLR---MYAACKEIDVAKAVFEEMP--------VRD-----V-----VSWSSMIAGFVACDSPSDALKVFHRMKLANESP 200 (462)
Q Consensus 142 l~~---~~~~~~~~~~A~~~~~~~~--------~~~-----~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 200 (462)
+.+ .++..|++.+|+++++... ..| . ..--.|.-.+...|+.++|..+|....+.. ++
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~ 256 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PA 256 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CC
Confidence 221 2233455555555554441 000 0 011122233444455555555555544442 22
Q ss_pred CHHHHHHH---HHHHhcccchHh--HHHHHHH-----------HHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012504 201 NSVTLVSL---VSACTSLINVRA--GESIHSY-----------AVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 201 ~~~~~~~l---~~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
|....... +.+.....++-. ....++. +....-......-+.++..| .+.-+.+.++-....
T Consensus 257 D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 257 DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP 334 (652)
T ss_pred CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC
Confidence 22111111 111111110000 0000000 00000000000001111111 223334444443333
Q ss_pred CCC-hhhHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH--------HHHHhc
Q 012504 265 EKN-LQSWTIMISGL--ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFD--------EMARVY 333 (462)
Q Consensus 265 ~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~ 333 (462)
..- ...+..++... ++...+.++.+++...-+....-........+......|+++.|.+++. .+...
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~- 413 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA- 413 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-
Confidence 322 22344444332 2223566777777776654222223344555566778999999999999 44432
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 334 NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--------EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
+..| .+...++..+.+.++.+.|..++.+... ++. ..++..+...-.++|+. ++|..+++++.+.+|+
T Consensus 414 ~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~-~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 414 KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE-EEASSLLEELVKFNPN 490 (652)
T ss_pred ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch-HHHHHHHHHHHHhCCc
Confidence 3334 4555667777777776666666655421 111 23344444555678999 9999999999999999
Q ss_pred CCchHHHHHHHHhhcCCHHHHHHHHHHH
Q 012504 405 LGANYVLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
+..+...++.+|++. +.+.|..+-+.+
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999998776 457777665543
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.9e-06 Score=78.73 Aligned_cols=130 Identities=11% Similarity=-0.014 Sum_probs=86.5
Q ss_pred HHHHHHHHhhc--cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHH--------hCCC-CCCHH
Q 012504 305 SFSAILSACSH--LGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIR--------NMPT-EPNAV 372 (462)
Q Consensus 305 ~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~-~~~~~ 372 (462)
.+..++..+.+ ......+..++..... +.+.+ ..+...++......|+++.|.+++. .+.. .-.+.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 44444444332 2246677777777765 33333 5566677888899999999999998 3332 22344
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKL----EPEL---GANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+...+...+.+.++. +.|..++..+.+- .+.. ...+..++..-.+.|+.++|.++++++.+.+.
T Consensus 419 ~V~aiv~l~~~~~~~-~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDN-DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred HHHHHHHHHHhccCC-ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 555566677788888 8888888887652 2222 23455566666778999999999999987544
No 81
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.3e-08 Score=92.16 Aligned_cols=215 Identities=12% Similarity=0.059 Sum_probs=177.1
Q ss_pred HhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHH
Q 012504 212 CTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 212 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 288 (462)
+.+.|++.+|.-.|+..++.. |.+...|..|.......++-..|+..+++..+ .|..+.-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 457788999999999998886 67888999999999999999999999988875 35677888888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 289 SLFAKMIQTGLKPDSISFSAIL-----------SACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
+.++.-+....+ |..+. ..+.....+....++|-++....+..+|+.+...|.-.|--.|++++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999888654211 11111 22334445667777777777765666888899999999999999999
Q ss_pred HHHHHHhCCC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 358 AYHIIRNMPT-E-PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 358 A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
|.+.|+.+.. + .|...|+.|...++...+. .+|+..|.+++++.|.-.++...|+..|...|.+.+|.+.|=...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s-~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRS-EEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCccc-HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999998743 4 4678999999999999999 999999999999999999999999999999999999999886544
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.08 E-value=1.7e-06 Score=79.97 Aligned_cols=378 Identities=12% Similarity=0.075 Sum_probs=242.3
Q ss_pred CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIF 128 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (462)
.+..+..++.+.|..+++.+ ...-.+...|+-++|.+..+...+.+++ +..+|..+--.+....++++|.+.|..+.
T Consensus 26 gLK~~~~iL~k~~eHgeslA--mkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 26 GLKLIKQILKKFPEHGESLA--MKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred HHHHHHHHHHhCCccchhHH--hccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55666677776666444433 3333455678899999999888876555 67778777776777789999999999998
Q ss_pred HhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCC-CCCCHHH
Q 012504 129 KVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLAN-ESPNSVT 204 (462)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~ 204 (462)
..+ +.|..++.-|.-.-+..++++.....-..+.+ .....|..+..++.-.|+...|..+++...+.. -.|+...
T Consensus 103 ~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 103 KIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred hcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 876 44667777777777778888776666555543 345678888888888999999999999987764 2466655
Q ss_pred HHHHH------HHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh--h-hHHHHH
Q 012504 205 LVSLV------SACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL--Q-SWTIMI 275 (462)
Q Consensus 205 ~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~l~ 275 (462)
+.... ......|.++.|.+.+......- ......-..-...+.+.+++++|..++..+..+++ . .|..+.
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHH
Confidence 54433 23456677777776665544331 22223334556778889999999999999886543 3 344444
Q ss_pred HHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 276 SGLADNGRGNYAI-SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 276 ~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
.++.+-.+.-++. .+|....+.-....... ..=+.......-.+..-.++....+. |+++- +..+...|-....
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~v---f~dl~SLyk~p~k 335 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPLLSK-GVPSV---FKDLRSLYKDPEK 335 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHHHHHHHHhhc-CCCch---hhhhHHHHhchhH
Confidence 5554333333344 66666554421111111 11111222222334444555555554 66553 2333333322111
Q ss_pred HH----HHHHHHHhC-------------CCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 355 IE----EAYHIIRNM-------------PTEPNAVIL--RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 355 ~~----~A~~~~~~~-------------~~~~~~~~~--~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
.+ -+..+...+ .++|....| ..++..+-..|++ +.|..+++.+...-|.-+..|..-+++
T Consensus 336 ~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~-~~A~~yId~AIdHTPTliEly~~KaRI 414 (700)
T KOG1156|consen 336 VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY-EVALEYIDLAIDHTPTLIELYLVKARI 414 (700)
T ss_pred hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH-HHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 11 111122222 114565555 4566788899999 999999999999999988999999999
Q ss_pred HhhcCCHHHHHHHHHHHhcCCC
Q 012504 416 SSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+...|++++|...+++.++.+.
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999999887664
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.07 E-value=1.2e-05 Score=74.39 Aligned_cols=364 Identities=12% Similarity=0.139 Sum_probs=184.0
Q ss_pred CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHC-CCCCCcchHHHHHHHhhhhcCchhHHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNFTYPFVVKACGRCLLIGIGGSVHSLI 127 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (462)
.++.++..+.+||. .|-.-+..+.++|++......|+..+.. .+.--...|...+......+-++.+..+++..
T Consensus 90 c~er~lv~mHkmpR-----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY 164 (835)
T KOG2047|consen 90 CFERCLVFMHKMPR-----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 56667777777776 6767777777788888888888777654 12223445666777777777777777777777
Q ss_pred HHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC----------ChhhHHHHHHHHHcCCCh---hHHHHHHHHhH
Q 012504 128 FKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR----------DVVSWSSMIAGFVACDSP---SDALKVFHRMK 194 (462)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~ 194 (462)
++.. +..-+--+..+++.+++++|-+.+..+... +-..|..+-....+.-+. -.+..+++.+.
T Consensus 165 Lk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 165 LKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 6543 222455667777778888877777766522 222344333333332221 12222222222
Q ss_pred HCCCCCCH--HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc----------------C-----
Q 012504 195 LANESPNS--VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC----------------G----- 251 (462)
Q Consensus 195 ~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~----- 251 (462)
. .-+|. ..+..|.+.|.+.|.++.|..+|++....- .+..-|..+.++|..- |
T Consensus 241 ~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 241 R--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred c--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh
Confidence 2 12332 245555556666666666666665554431 1222222222222210 1
Q ss_pred -ChHHHHHHHhhccCC---------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHH
Q 012504 252 -HVEKAFKVFNLMREK---------------NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD------SISFSAI 309 (462)
Q Consensus 252 -~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l 309 (462)
+++-...-|+.+... ++..|..-+. +..|+..+-+..+.++... +.|- ...|..+
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHH
Confidence 111112222222211 1122222111 2234555556666665543 2221 1234555
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---C---------------
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMPT---E--------------- 368 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~--------------- 368 (462)
...|...|+++.|..+|++..+. ..+-- ..+|..-..+=.+..+++.|+++.+.... .
T Consensus 394 aklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 55566666666666666666543 22111 33444444444556666666666665411 0
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHH
Q 012504 369 --PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMV 430 (462)
Q Consensus 369 --~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (462)
.+..+|..++...-..|-+ +....+++++..+.--.|.+....+..+....-++++.++|+
T Consensus 473 lhrSlkiWs~y~DleEs~gtf-estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTF-ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1223444444444455555 666666666666555555555555555555555555555555
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.5e-06 Score=74.44 Aligned_cols=374 Identities=13% Similarity=0.029 Sum_probs=208.7
Q ss_pred CCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHH
Q 012504 48 ISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125 (462)
Q Consensus 48 ~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 125 (462)
|++++|...+.-+..+ |+...+-.|...+.-.|.+.+|..+-....+ ++..-..++....+.++-++-..+.+
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~ 145 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHS 145 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3666666666544322 5555555565555556666666655544321 23333344444555566555555544
Q ss_pred HHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCC--hhhHHH-HHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRD--VVSWSS-MIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
.+... ..---+|.........+++|++++.++...+ -...|. +.-+|.+..-++-+.+++.-..+. .||+
T Consensus 146 ~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS 218 (557)
T KOG3785|consen 146 SLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS 218 (557)
T ss_pred HHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc
Confidence 44322 1222445566666677899999999987543 334443 334677777778777777776653 3444
Q ss_pred -HHHHHHHHHHhcc--cchHhHH------------HHHHHHHHhCC------------Cc-----hHhHHHHHHHHHHhc
Q 012504 203 -VTLVSLVSACTSL--INVRAGE------------SIHSYAVVNGL------------EL-----DVALGTALVEMYSKC 250 (462)
Q Consensus 203 -~~~~~l~~~~~~~--~~~~~a~------------~~~~~~~~~~~------------~~-----~~~~~~~l~~~~~~~ 250 (462)
...+.......+. |+..+.+ ...+.+.++++ -| -+..-..|+--|.+.
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q 298 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQ 298 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccc
Confidence 3333332222221 2111110 11222222211 01 112223345557889
Q ss_pred CChHHHHHHHhhccCCChhhHHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHH
Q 012504 251 GHVEKAFKVFNLMREKNLQSWTIMISGLADNG-------RGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEG 322 (462)
Q Consensus 251 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a 322 (462)
++..+|..+.+++....+.-|-.-.-.+...| ...-|.+.|.-.-+++...|.. .--.+..++.-..+++++
T Consensus 299 ~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddV 378 (557)
T KOG3785|consen 299 NDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDV 378 (557)
T ss_pred ccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999998887655544333222333333 3344555555444444433322 233344455556678888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHH-HHHHHHHcCChHHHHHHHHHHHH
Q 012504 323 KNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE--PNAVILRS-FLGACRNHGQVLYLDDNLGKLLL 399 (462)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-l~~~~~~~~~~~~~a~~~~~~~~ 399 (462)
+.++..+..- +..|...-..+.++++..|.+.+|+++|-.+..+ .+..+|.. |.++|...+.+ +.|-. .++
T Consensus 379 l~YlnSi~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP-~lAW~---~~l 452 (557)
T KOG3785|consen 379 LTYLNSIESY--FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP-QLAWD---MML 452 (557)
T ss_pred HHHHHHHHHH--hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc-hHHHH---HHH
Confidence 8888888652 2333333335788888999999999999887542 35566654 45677888888 55544 444
Q ss_pred hcC-CCCCc-hHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 400 KLE-PELGA-NYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 400 ~~~-p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
+.+ |.+.. .....+.-|.+++.+--|-+.|+.+...++.|
T Consensus 453 k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 453 KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 433 33322 33345667788888888888888877766554
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.9e-07 Score=82.98 Aligned_cols=371 Identities=14% Similarity=0.064 Sum_probs=230.3
Q ss_pred cCCHHHHHHHhccC-C-CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC-cchHHHHHHHhhhhcCchhHHHH
Q 012504 47 SISLHFTRSLFNNL-P-VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NFTYPFVVKACGRCLLIGIGGSV 123 (462)
Q Consensus 47 ~~~~~~A~~~~~~~-~-~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 123 (462)
.|+++.|...|-+. . .++|-.-|..-..+|+..|++++|++=-.+-++ +.|+ +-.|...-.++.-.|++++|...
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 45899999988543 2 226777888899999999999998877666665 4566 34688888888888999999999
Q ss_pred HHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhc------CC-CC------ChhhHHHHHHHHHcC-------CCh
Q 012504 124 HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEE------MP-VR------DVVSWSSMIAGFVAC-------DSP 183 (462)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------~~-~~------~~~~~~~l~~~~~~~-------~~~ 183 (462)
|..-++.. +.+...++.|..++... ..+.+.|.. +. .| ....|..++..+.+. .+.
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 98877764 33556666777666111 011111111 11 00 112333333332211 011
Q ss_pred hHHHHHHHHhHH--------C-------CCCC---------C-------------HHHHHHHHHHHhcccchHhHHHHHH
Q 012504 184 SDALKVFHRMKL--------A-------NESP---------N-------------SVTLVSLVSACTSLINVRAGESIHS 226 (462)
Q Consensus 184 ~~a~~~~~~m~~--------~-------~~~p---------~-------------~~~~~~l~~~~~~~~~~~~a~~~~~ 226 (462)
+...+..-.+.. . +..| . ..-...+.++.-+..+++.+.+-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111110 0 0011 0 0123345566666677777888777
Q ss_pred HHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh----------hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 227 YAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ----------SWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
...... .+..-++....+|...|.+..+...-....+.+-. .+..+..+|.+.++++.++..|.+...
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 777765 56666677778888888887777766665543221 223344466667788888888888665
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHH
Q 012504 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTM-EHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVI 373 (462)
Q Consensus 297 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 373 (462)
....|+. ..+....+++........ -+.|.. .-...=...+.+.|++..|+..|.++.. +.|...
T Consensus 327 e~Rt~~~---------ls~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 327 EHRTPDL---------LSKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred hhcCHHH---------HHHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 4333322 122233444444443332 223332 1112225667788899999998888743 346778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
|..-.-+|.+.|.+ ..|..-.+...+++|+....|..-+.++....+|+.|.+.|++..+.+..
T Consensus 395 YsNRAac~~kL~~~-~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 395 YSNRAACYLKLGEY-PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 88888888899999 88888888888899888888888888888888999999988888776643
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=2.4e-06 Score=80.47 Aligned_cols=398 Identities=13% Similarity=0.050 Sum_probs=245.5
Q ss_pred chhHHHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhcc-CCCC--CCccc-HHHHHHHHH
Q 012504 2 ISRHIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNN-LPVT--PPLFA-YNTLIRAYA 77 (462)
Q Consensus 2 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~-~~~~--~~~~~-y~~li~~~~ 77 (462)
|.+.+.-+|..||+++.+-+.|++....-+......+..-+-+...|.--.|..++++ ++.+ |+..+ +-..-..|.
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~ 404 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCI 404 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHH
Confidence 4578889999999999999999998876554333333333311223355556666643 3333 43333 333333443
Q ss_pred h-CCCchhHHHHHHHHHHC--CC--CCCcchHHHHHHHhhhh-----------cCchhHHHHHHHHHHhCCCCccchHhH
Q 012504 78 K-TSCSIESIKLFDEMLKT--GL--RPDNFTYPFVVKACGRC-----------LLIGIGGSVHSLIFKVGLDSDKYIGNT 141 (462)
Q Consensus 78 ~-~g~~~~a~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (462)
+ .+..+++++.-.+.... +. ...+..|..+--+|... ....++.+.++..++.+.. |+...-.
T Consensus 405 e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~ 483 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFY 483 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 3 46677777766666552 11 11233344443333321 2345677788888877632 3333333
Q ss_pred HHHHHHhcCChhHHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 142 LLRMYAACKEIDVAKAVFEEMP----VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 142 l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
+.--|+..++++.|.+..++.. ..+...|..|.-.+...+++.+|+.+.+.....- ..|......-+..-...++
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhccc
Confidence 4556788899999998888765 3478899999999999999999999998865531 1111111111111222344
Q ss_pred hHhHHHHHHHHHHh---------------------CC-------CchHhHHHHHHHHHH---hcCChHHHHHHHhhccCC
Q 012504 218 VRAGESIHSYAVVN---------------------GL-------ELDVALGTALVEMYS---KCGHVEKAFKVFNLMREK 266 (462)
Q Consensus 218 ~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~ 266 (462)
.+++......+... |+ .....++..+..... +.-..+.....+.....+
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~ 642 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGP 642 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCC
Confidence 44443333222211 10 011122222221111 111111111111111122
Q ss_pred C------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-h
Q 012504 267 N------LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-M 339 (462)
Q Consensus 267 ~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 339 (462)
+ ...|......+...+..++|...+.+.... .+-....|......+...|..++|...|.... .+.|+ +
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv 718 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHV 718 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCc
Confidence 2 124666677888899999999888887764 23345567777677888899999999999887 45665 7
Q ss_pred hHHHHHHHHHHhcCCHHHHHH--HHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 340 EHYGCMVDMLGRAGLIEEAYH--IIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~A~~--~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
....++..++.+.|+..-|.. ++.++.. +.+...|..+...+.+.|+. +.|-..|..+.++.+.+|
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~-~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS-KQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch-HHHHHHHHHHHhhccCCC
Confidence 788899999999999888877 8888743 45789999999999999999 999999999999987776
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=2.9e-07 Score=76.81 Aligned_cols=374 Identities=10% Similarity=0.014 Sum_probs=223.5
Q ss_pred CHHHHHHHhccCCCC-C-CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHH-HHHhhhhcCchhHHHHHH
Q 012504 49 SLHFTRSLFNNLPVT-P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFV-VKACGRCLLIGIGGSVHS 125 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~-~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~ 125 (462)
++++|.+++..-.+. | +....+.|..+|....++..|-+.++++-.. -|...-|... ...+-+.+.+..|..+..
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAF 102 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 778888877655443 3 6777888888888888999999999988764 4555555332 233556677888888877
Q ss_pred HHHHhCCCCccc--hHhHHHHHHHhcCChhHHHHHHhcCCC-CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 126 LIFKVGLDSDKY--IGNTLLRMYAACKEIDVAKAVFEEMPV-RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 126 ~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
.|... |+.. ....-.......+++..+..++++.+. .+..+.+...-...+.|+++.|++-|+...+-+---..
T Consensus 103 ~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 103 LLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 76542 1111 111111123456888889999988884 55666666666667889999999999988765433444
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHhCCC-------------ch---------------HhHHHHHHHHHHhcCChH
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVNGLE-------------LD---------------VALGTALVEMYSKCGHVE 254 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~---------------~~~~~~l~~~~~~~~~~~ 254 (462)
..|+..+. ..+.|+.+.|.+...+++++|++ || +..+|.-...+.+.|+++
T Consensus 180 lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 180 LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 56665554 44678889999998888887652 11 122333344567889999
Q ss_pred HHHHHHhhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 255 KAFKVFNLMRE-----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 255 ~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
.|.+.+-.|.. -|++|...+.-. -..+++.+..+-+.-+...+. ....||..++-.||+..-++.|-.++.+-
T Consensus 259 AA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 259 AAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 99999998874 366666554322 223455555555555565543 34568888888899988888888877654
Q ss_pred HHhcCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCh---HHHHHHHHHHHHhcCCC
Q 012504 330 ARVYNIKPTMEHYGCMVDMLGR-AGLIEEAYHIIRNMPTEPNAVILRSFLGACR-NHGQV---LYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~---~~~a~~~~~~~~~~~p~ 404 (462)
....-.-.+...|+ |++++.- .-..++|.+-++.+...-....-...+.... +..+- ...+..-++..+++-
T Consensus 337 ~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-- 413 (459)
T KOG4340|consen 337 AHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-- 413 (459)
T ss_pred cchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--
Confidence 32100011233333 3334332 3355666655554422111111111122211 11111 011222233333321
Q ss_pred CCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 405 LGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
..+...-++.|.+..++..+.++|+.-.+
T Consensus 414 -LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 414 -LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred -HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 12556677788899999999999986554
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=1.6e-06 Score=79.91 Aligned_cols=194 Identities=15% Similarity=-0.007 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhh
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGL-KPDS--ISFSAILSACS 314 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~~ 314 (462)
..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444555666666666666666553 2334555556666666666666666666555321 1221 22334555566
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHH-H--HHHHHHHhcCC------HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHY-G--CMVDMLGRAGL------IEEAYHIIRNM-PTEPNAVILRSFLGACRNH 384 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~------~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~ 384 (462)
..|++++|..++++........+..... + .++.-+...|. ++.+....... ..............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 6666666666666654221111111111 1 11222222232 22222111111 1111111112345566777
Q ss_pred CChHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 385 GQVLYLDDNLGKLLLKLEPE---------LGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
|+. +.|...++.+....-. ........+.++...|++++|.+.+......
T Consensus 278 ~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDK-DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCH-HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778 7788888776652211 2334455666777899999999998877644
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=3.9e-06 Score=77.26 Aligned_cols=197 Identities=7% Similarity=-0.131 Sum_probs=107.6
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCC-CCCcchHH-HHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhH--
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNFTYP-FVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNT-- 141 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 141 (462)
...|..+...+...|+.+.+.+.+....+... .++..... .....+...|++++|...++...+..+. +...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhH
Confidence 34566666667777778777776666654322 12221111 1122345668888888888887776422 3223221
Q ss_pred -HHHHHHhcCChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 142 -LLRMYAACKEIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 142 -l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
........+..+.+.+.++..... .......+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 111112234555555555442221 12233344456667777777777777776643 3344555666666667777
Q ss_pred hHhHHHHHHHHHHhCCC-ch--HhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012504 218 VRAGESIHSYAVVNGLE-LD--VALGTALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
+++|...+++....... ++ ...+..+...+...|++++|..++++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77777777666654311 12 1233455666666677777766666654
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=1.8e-06 Score=73.62 Aligned_cols=313 Identities=11% Similarity=0.051 Sum_probs=175.7
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHH---HhhhhcCchhHHHHHHHHHHhCCCCccch-HhH
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVK---ACGRCLLIGIGGSVHSLIFKVGLDSDKYI-GNT 141 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 141 (462)
+.----+...+..+|++..|+.-|...++- |+..|..+.+ .|...|+-.-|..-++..++. +||-.. -..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 333445666777788888888888877653 4444554443 356667777777766666654 444321 111
Q ss_pred HHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhH
Q 012504 142 LLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 142 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
-...+.+.|.++.|+.-|+.+...++. .|...+|.+-+.... ........+..+...|+...|
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhH
Confidence 223456677777777777666543221 011111111110000 001122334445566777778
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhcc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012504 222 ESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMR---EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTG 298 (462)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 298 (462)
+.....+++.. +.+...+..-..+|...|++..|+.-++... ..+...+-.+-..+...|+.+.++...++-.+.
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 88777777765 5677777777788888888888776555443 455666666677777778888877777776663
Q ss_pred CCCCHHH-H---HHH---H------HHhhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhcCCHHHHHH
Q 012504 299 LKPDSIS-F---SAI---L------SACSHLGLVDEGKNYFDEMARVYNIKPT-----MEHYGCMVDMLGRAGLIEEAYH 360 (462)
Q Consensus 299 ~~p~~~~-~---~~l---l------~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~ 360 (462)
.||... | ..+ . ......+++.++....+...+. .|. ...+..+-.++...|++.+|++
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHH
Confidence 455432 1 111 0 1122344555555555555432 222 2233344555566666666666
Q ss_pred HHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 361 IIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 361 ~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
...++.. .| |+.++..=..+|.-...+ +.|+.-|+.+.+.++++..+
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~Y-D~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMY-DDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHhcCcccHHH
Confidence 6665532 23 355555555666666666 67777777777666666533
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=1.9e-06 Score=89.77 Aligned_cols=322 Identities=11% Similarity=-0.006 Sum_probs=203.2
Q ss_pred hhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC----CC----C----hhhHHHHHHHHHcC
Q 012504 113 RCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP----VR----D----VVSWSSMIAGFVAC 180 (462)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~----~----~~~~~~l~~~~~~~ 180 (462)
..|+++.+..+++.+.......+..........+...|+++++...++... .. + ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 345555555555443211111223333444556677899999888887543 11 1 11222233456678
Q ss_pred CChhHHHHHHHHhHHCCCCCCH----HHHHHHHHHHhcccchHhHHHHHHHHHHhCC---Cc--hHhHHHHHHHHHHhcC
Q 012504 181 DSPSDALKVFHRMKLANESPNS----VTLVSLVSACTSLINVRAGESIHSYAVVNGL---EL--DVALGTALVEMYSKCG 251 (462)
Q Consensus 181 ~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~ 251 (462)
|++++|...+++....-...+. .....+...+...|+++.|...+.+.....- .+ .......+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999987663111121 2344555667789999999999888775321 11 2234566677888999
Q ss_pred ChHHHHHHHhhccC----C---C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhhcc
Q 012504 252 HVEKAFKVFNLMRE----K---N----LQSWTIMISGLADNGRGNYAISLFAKMIQT--GLKPD--SISFSAILSACSHL 316 (462)
Q Consensus 252 ~~~~a~~~~~~~~~----~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~~~~ 316 (462)
+++.|...+++... . + ...+..+...+...|++++|...+.+.... ...+. ...+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 99999998877542 1 1 123445566677789999999999887653 11122 23444455677788
Q ss_pred CcHHHHHHHHHHHHHhcCCCCchhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHcC
Q 012504 317 GLVDEGKNYFDEMARVYNIKPTMEHY-----GCMVDMLGRAGLIEEAYHIIRNMPTE--PNA----VILRSFLGACRNHG 385 (462)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~~~~ 385 (462)
|+.+.|...+...............+ ...+..+...|+.+.|.+.+...... ... ..+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999988885431111111111 11224455688999999998776432 111 12345667788999
Q ss_pred ChHHHHHHHHHHHHhcC------CCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 386 QVLYLDDNLGKLLLKLE------PELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
+. ++|...++++.... +....+...++.++.+.|+.++|...+.+..+.
T Consensus 706 ~~-~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 706 QF-DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CH-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99 99999999987642 122346677888999999999999999988754
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=7.9e-08 Score=84.01 Aligned_cols=217 Identities=11% Similarity=0.073 Sum_probs=118.1
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCC-CHHHHHHHHHHHhcccchH
Q 012504 141 TLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESP-NSVTLVSLVSACTSLINVR 219 (462)
Q Consensus 141 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~ 219 (462)
.+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-++.....+..+ +..........+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 344555566665555444444444444444444433332234444544444443332222 2222222334455667777
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh-hhHHHHHHHHH----HcCChHHHHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL-QSWTIMISGLA----DNGRGNYAISLFAKM 294 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~----~~~~~~~a~~~~~~m 294 (462)
.|.++++.. .+.......+.+|.+.++++.|.+.++.|.+.+. .+...+..++. -.+.+.+|..+|+++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 776666432 3345555667777777777777777777775322 23333333332 234677888888887
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhCC
Q 012504 295 IQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLI-EEAYHIIRNMP 366 (462)
Q Consensus 295 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 366 (462)
.+. ..+++.+.+.+..++...|++++|..++.+.... -+-++.+...++-+....|+. +.+.+.+.++.
T Consensus 194 ~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 194 SDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred Hhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 654 4566777777777777888888888887776542 233456666677666666766 55667777764
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=3.4e-06 Score=79.09 Aligned_cols=313 Identities=13% Similarity=0.073 Sum_probs=162.6
Q ss_pred hcChhHHHHHHHHHHHh--------CCCCchhhhhhHhhhhhcC-CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCch
Q 012504 13 SKTVHHLHQLHTLFLKT--------SLDHNTCIISRFILTSLSI-SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 13 ~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~ll~~~~~~-~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 83 (462)
-|++..++.+|+.+.-. |--.+..-..+++ .+.+ ++.+|..+|-+-.. -...|..|....+|+
T Consensus 503 i~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~l--ail~kkfk~ae~ifleqn~------te~aigmy~~lhkwd 574 (1636)
T KOG3616|consen 503 IGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAML--AILEKKFKEAEMIFLEQNA------TEEAIGMYQELHKWD 574 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHH--HHHHhhhhHHHHHHHhccc------HHHHHHHHHHHHhHH
Confidence 36777777776654421 2222222333344 4444 78888888755432 223466677777788
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 84 ESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
+|+.+-+. .|.+.-...-.+.++++...|+-++|-++- .+..--.+.|..|.+.|.+.+|.+....-.
T Consensus 575 e~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~ 642 (1636)
T KOG3616|consen 575 EAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDE 642 (1636)
T ss_pred HHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHH
Confidence 87776543 232211122233445555556555554321 111111345777888888777665542211
Q ss_pred --CCChhhHHHHHHHHHc-------------CCChhHHHHHHHHhHHC---------CCCCCHHHHH-HHHHHHhcccch
Q 012504 164 --VRDVVSWSSMIAGFVA-------------CDSPSDALKVFHRMKLA---------NESPNSVTLV-SLVSACTSLINV 218 (462)
Q Consensus 164 --~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~m~~~---------~~~p~~~~~~-~l~~~~~~~~~~ 218 (462)
..|......+..++.+ ..++++|++.|++--.- .++..+++.. .....+...|++
T Consensus 643 ~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~ 722 (1636)
T KOG3616|consen 643 ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQL 722 (1636)
T ss_pred HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhH
Confidence 2233333333333333 33444444444321100 0111111110 011112222333
Q ss_pred HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 219 RAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ--SWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+.|..-|-+.. ..-..+.+......|.+|+.+++.+...++. -|..+.+.|...|+++.|.++|.+.-
T Consensus 723 daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~- 792 (1636)
T KOG3616|consen 723 DAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD- 792 (1636)
T ss_pred HHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-
Confidence 33332221111 1122345556667788888888877765543 47777788888888888888876532
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 297 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
.++-.|..|.+.|+++.|.++-.+.. |.......|..-..-+-+.|++.+|.++|-.+.
T Consensus 793 --------~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 793 --------LFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred --------hhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 24555677888888888877766553 444555666666666667777777777766654
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.88 E-value=3.7e-07 Score=75.37 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=104.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456777777665444322211 11 012235666777777777665 335567788888888888888
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 355 IEEAYHIIRNMPT--EPNAVILRSFLGAC-RNHGQ--VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 355 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~-~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
+++|...|++... +.+...+..+..++ ...|+ . +.|.++++++.+.+|+++.++..++..+.+.|++++|+..|
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~-~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMT-PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887643 34566777777653 56666 5 88888888888888888888888888888888888888888
Q ss_pred HHHhcCCCcc
Q 012504 430 VAINQKGLNK 439 (462)
Q Consensus 430 ~~~~~~~~~~ 439 (462)
+++.+.....
T Consensus 168 ~~aL~l~~~~ 177 (198)
T PRK10370 168 QKVLDLNSPR 177 (198)
T ss_pred HHHHhhCCCC
Confidence 8887766543
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=3.6e-06 Score=72.15 Aligned_cols=370 Identities=9% Similarity=-0.026 Sum_probs=201.7
Q ss_pred CHHHHHHHhccCCCC--CCc-ccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHH
Q 012504 49 SLHFTRSLFNNLPVT--PPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~--~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 125 (462)
++..|..+++--... -.. .+--.+..++.+.|++++|+..|..+.+.. .|+...+..+.-+..-.|.+.+|.++..
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 666676666432211 111 122234456667788888888887776643 4555566566666666677777776654
Q ss_pred HHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHH
Q 012504 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTL 205 (462)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 205 (462)
.. +.++-....|+..-.+.++-++-..+-+.+... ..---+|.+..-..-.+++|+++|.+....+ |+-...
T Consensus 116 ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~al 187 (557)
T KOG3785|consen 116 KA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIAL 187 (557)
T ss_pred hC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhh
Confidence 32 112223334445555666666655555554432 1222334444344457889999999987653 555554
Q ss_pred HHHH-HHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc--CChHHH--HHHHhhcc----------------
Q 012504 206 VSLV-SACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC--GHVEKA--FKVFNLMR---------------- 264 (462)
Q Consensus 206 ~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a--~~~~~~~~---------------- 264 (462)
+.-+ -+|.+..-++-+.++++-..+.- +.++...|.......+. |+..+. .++-+...
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 4433 34556666777777776655542 33444444443333322 221111 11111111
Q ss_pred ---------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-----hccCcHHHHHH
Q 012504 265 ---------------EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC-----SHLGLVDEGKN 324 (462)
Q Consensus 265 ---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~ 324 (462)
+.=+.+--.++--|.+.++..+|..+.+++.. ..|-......+..+- .......-|.+
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 11112333445556777888888877665432 233333333333221 12223555666
Q ss_pred HHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 325 YFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 325 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.|+-.-.. +..-| ..--.++...+.-..++++.+..++.+.. ..|...--.+..+++..|++ .+|+++|-++...
T Consensus 345 ffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny-~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNY-VEAEELFIRISGP 422 (557)
T ss_pred HHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcCh-HHHHHHHhhhcCh
Confidence 66555332 33322 22334455555666678888887777653 12323333467888889999 9999988877766
Q ss_pred CCCCCchH-HHHHHHHhhcCCHHHHHHHHHHH
Q 012504 402 EPELGANY-VLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 402 ~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
.-.+..+| ..|+++|.++|..+-|+.++-++
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 53333344 45788999999999998877554
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=7.7e-07 Score=76.58 Aligned_cols=182 Identities=13% Similarity=0.010 Sum_probs=115.3
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhccCC---Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-HHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMREK---NL---QSWTIMISGLADNGRGNYAISLFAKMIQTGLK-PDS-ISFS 307 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~ 307 (462)
....+..++..+...|++++|...|+++.+. +. .++..+..++...|++++|...++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445555666667777777777777766532 11 34566667777777777777777777764221 111 1233
Q ss_pred HHHHHhhc--------cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 012504 308 AILSACSH--------LGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFL 378 (462)
Q Consensus 308 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~ 378 (462)
.+..++.. .|+.+.|.+.++.+... .|+ ...+..+..... ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHH
Confidence 33333433 36788888888888764 333 223222211110 00000 01112456
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
..+...|++ ..|...++.+.+..|+++ ..+..++.++...|++++|..+++.+....
T Consensus 174 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLKRGAY-VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHcCCh-HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 678899999 999999999999877654 688899999999999999999999887654
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=5.8e-07 Score=89.66 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=159.4
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-H
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK--------NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS-I 304 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~ 304 (462)
|-+...|-..|......++.++|+++.++.... -...|.++++.-..-|.-+...++|+++.+. .|+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 445567778888888889999999998887631 2346777777777778788888899988874 243 3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPNAVILRSFLGA 380 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~ 380 (462)
.|..|...|.+.+.+++|.++++.|.+.++ -...+|...+..+.+.++-+.|..++.++.. +.........+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 677888888999999999999999988655 5667888889999998888888888887632 2234555556666
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
-.+.|+. +.+..+|+..+.-.|.-.+.|..+++.-.+.|+.+.+..+|++.+..++.+
T Consensus 1610 EFk~GDa-eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1610 EFKYGDA-ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HhhcCCc-hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 7788999 999999999999899888899999999999999999999999998887765
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=2.1e-06 Score=71.83 Aligned_cols=197 Identities=14% Similarity=0.078 Sum_probs=108.9
Q ss_pred CCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--CChhhHHH-
Q 012504 96 GLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--RDVVSWSS- 172 (462)
Q Consensus 96 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~- 172 (462)
|+.....-+.+++..+.+..++..+.+++..-.+..+ .+....+.|..+|....++..|-..++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 3443444566666667777777777777666555532 2445556667777777777777777777653 22222221
Q ss_pred HHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH--HhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 012504 173 MIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSA--CTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC 250 (462)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (462)
-...+-+.+.+..|+++...|... |+...-..-+.+ .-..+++..+..+.++....| +..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 233455667777777777666542 222222222222 224456666666655554322 333444445555666
Q ss_pred CChHHHHHHHhhccCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012504 251 GHVEKAFKVFNLMREK----NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLK 300 (462)
Q Consensus 251 ~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 300 (462)
|+++.|.+-|+...+- ....|+..+.. .+.++++.|++...+.+++|++
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 7777777777666542 23455544433 3446667777777776666653
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=1.6e-05 Score=67.99 Aligned_cols=295 Identities=8% Similarity=0.017 Sum_probs=185.8
Q ss_pred cCCHHHHHHHhccCCCCCCcccHHHH---HHHHHhCCCchhHHHHHHHHHHCCCCCCcchHH-HHHHHhhhhcCchhHHH
Q 012504 47 SISLHFTRSLFNNLPVTPPLFAYNTL---IRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYP-FVVKACGRCLLIGIGGS 122 (462)
Q Consensus 47 ~~~~~~A~~~~~~~~~~~~~~~y~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~ 122 (462)
.|++.+|+.-|...-. .|...|.++ ...|...|+...|+.=+...++ .+||-..-. .--..+.+.|.++.|..
T Consensus 51 ~~Q~sDALt~yHaAve-~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVE-GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred hhhHHHHHHHHHHHHc-CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHH
Confidence 4588899988877665 566666666 4678899999999999999887 477754322 12234678999999999
Q ss_pred HHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 123 VHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
-|+..+.+... ..+ ...++.+.--.++-+.+ ...+..+...|+...|+.....+.+.. +-|.
T Consensus 128 DF~~vl~~~~s--~~~---~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 128 DFDQVLQHEPS--NGL---VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HHHHHHhcCCC--cch---hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 99999987532 211 11222222112221111 123334455677777777777766642 3355
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh------hHHHH--
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ------SWTIM-- 274 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~l-- 274 (462)
..+..-..+|...|.+..|+.=++..-+.. ..+...+..+-..+...|+.+.++..+++..+-|+. .|..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 556566666677777777666666665554 334444445556666667777777666666543321 12211
Q ss_pred -------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHH
Q 012504 275 -------ISGLADNGRGNYAISLFAKMIQTGLKPDSIS---FSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYG 343 (462)
Q Consensus 275 -------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 343 (462)
+......++|.++++..+...+......... +..+-.++..-+++.+|++.-.++. .+.|+ ..++.
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~ 345 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHH
Confidence 2334556777788877777776543322223 3344455667788888888888887 44555 77888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
.-..+|.-...++.|+.-|+...
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Confidence 88888888888888888888764
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.4e-05 Score=71.06 Aligned_cols=393 Identities=12% Similarity=-0.045 Sum_probs=230.4
Q ss_pred hhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccC-CCCCC-cccHHHHHHHHHhCCCchhHHHH
Q 012504 12 LSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNL-PVTPP-LFAYNTLIRAYAKTSCSIESIKL 88 (462)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~-~~~~~-~~~y~~li~~~~~~g~~~~a~~~ 88 (462)
+.|+++.|...|...+..... +...|+.=. .+...|++++|++=-.+- ...|+ ...|+....++.-.|++++|+..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred ccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 448999999999998865422 444444444 233334555555433222 12233 45699999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHhhhh---cCchhHHHHHHHHHHhC---CCCccchHhHHHHHH----------HhcCCh
Q 012504 89 FDEMLKTGLRPDNFTYPFVVKACGRC---LLIGIGGSVHSLIFKVG---LDSDKYIGNTLLRMY----------AACKEI 152 (462)
Q Consensus 89 ~~~m~~~g~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~----------~~~~~~ 152 (462)
|.+-++.... +...++.+..++... ++.-.--.++....... .......|..++..+ ....++
T Consensus 93 y~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 93 YSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 9998886322 455566666665211 11000011111111000 000011111111111 111111
Q ss_pred hHHHHHHhcCC----------------CC------------C----------hhhHHHHHHHHHcCCChhHHHHHHHHhH
Q 012504 153 DVAKAVFEEMP----------------VR------------D----------VVSWSSMIAGFVACDSPSDALKVFHRMK 194 (462)
Q Consensus 153 ~~A~~~~~~~~----------------~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 194 (462)
-.+...+.... .| | ..-...+.+...+..++..|++-+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12222221110 00 1 1135567777788889999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHh-------HHHHHHHHHHhcCChHHHHHHHhhccCCC
Q 012504 195 LANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVA-------LGTALVEMYSKCGHVEKAFKVFNLMREKN 267 (462)
Q Consensus 195 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 267 (462)
... -+..-++....++...|.............+.|.. ... .+..+..+|.+.++++.++..|++...+.
T Consensus 252 el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 252 ELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred hHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 753 44444555666788888887777776666665522 122 22234456777888999999998855321
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMV 346 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 346 (462)
.. -....+....+++........-. .|... -...-...+.+.|++..|...|.+++.. -+.|...|....
T Consensus 329 Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRA 399 (539)
T KOG0548|consen 329 RT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRA 399 (539)
T ss_pred cC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHH
Confidence 11 11222334445555554444332 33321 2222245677889999999999998874 355688888888
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 347 DMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
-+|.+.|.+..|+.-.+.... ++....|.--..++....++ +.|...|++.++.+|++......+.+++...
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y-dkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY-DKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 899999999988887766643 23345555555666777788 9999999999999998887777777666543
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=5.2e-07 Score=82.15 Aligned_cols=247 Identities=14% Similarity=0.064 Sum_probs=186.1
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHH
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEK 255 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (462)
-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+.+.++.. +.+..+...|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4578899999999999988764 4467789999999999999999999999999886 6678888899999999999999
Q ss_pred HHHHHhhccCCCh-hhHHHHH---------HHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 012504 256 AFKVFNLMREKNL-QSWTIMI---------SGLADNGRGNYAISLFAKMIQ-TGLKPDSISFSAILSACSHLGLVDEGKN 324 (462)
Q Consensus 256 a~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 324 (462)
|.+.+++.....+ ..|.... ..+.....+.+..++|-++.. .+..+|+.....|.-.|...|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999987742111 0110000 112222334455666666554 4544677777778778889999999999
Q ss_pred HHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 325 YFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 325 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.|+.++. +.| |...||.|.-.++...+.++|+..|.++.. +|. +.+...|..+|...|.+ ++|...|-.++.+
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y-kEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY-KEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH-HHHHHHHHHHHHh
Confidence 9999985 355 588999999999999999999999999854 554 66777889999999999 9999999888876
Q ss_pred CCC-----CC-----chHHHHHHHHhhcCCHHHHHHH
Q 012504 402 EPE-----LG-----ANYVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 402 ~p~-----~~-----~~~~~l~~~~~~~g~~~~A~~~ 428 (462)
.+. +. .+|..|=.++...++.+-+.++
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 543 11 3566666666667776655443
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=9.1e-05 Score=72.30 Aligned_cols=381 Identities=10% Similarity=0.074 Sum_probs=204.3
Q ss_pred HHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcC--CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhH
Q 012504 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSI--SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIES 85 (462)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~--~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a 85 (462)
++..|+.-..-+..-+-+++ +.|...|+.++ --..|. -++.... -.+|+..|....+.-+.++...+-+.+-
T Consensus 929 lI~vcNeNSlfK~~aRYlv~---R~D~~LW~~VL~e~n~~rRqLiDqVv~--tal~E~~dPe~vS~tVkAfMtadLp~eL 1003 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVE---RSDPDLWAKVLNEENPYRRQLIDQVVQ--TALPETQDPEEVSVTVKAFMTADLPNEL 1003 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHh---ccChHHHHHHHhccChHHHHHHHHHHH--hcCCccCChHHHHHHHHHHHhcCCcHHH
Confidence 34455554444555555554 34778888888 221111 1111111 2345557777788888999999999999
Q ss_pred HHHHHHHHHCCCCC--CcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHH----
Q 012504 86 IKLFDEMLKTGLRP--DNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVF---- 159 (462)
Q Consensus 86 ~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~---- 159 (462)
+++++++.-.+-.. +...-+.++-...+ -+..+..++.+.+-..+ .| .+...+...+-+++|..+|
T Consensus 1004 IELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred HHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHhc
Confidence 99999987532111 11112223322222 23334444444333221 11 1122222333333333333
Q ss_pred -----------------------hcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 012504 160 -----------------------EEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI 216 (462)
Q Consensus 160 -----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 216 (462)
++.. .+..|..+..+-.+.|...+|++-|-+. .|+..|..+++.+.+.|
T Consensus 1076 ~n~~A~~VLie~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1076 MNVSAIQVLIENIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcC
Confidence 3333 2356778888888888888887766432 46667888888888888
Q ss_pred chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC-----------------------CChhhHHH
Q 012504 217 NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE-----------------------KNLQSWTI 273 (462)
Q Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------------~~~~~~~~ 273 (462)
.+++-.+++....+..-.|... ..|+-+|++.+++.+.++++.--.. .++.-|..
T Consensus 1148 ~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~ 1225 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAK 1225 (1666)
T ss_pred cHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHH
Confidence 8888888777776665444433 4567778887777766655432110 12233555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
|...+...|+++.|.+.-++. .+..||..+-.+|...+.+.-| ++... ++-....-...++..|...|
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcC
Confidence 555555666666555443332 1445666666666655544332 22211 22233444566677777777
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCCCchHHHHHHHHhhcCCHHHHHHHHH
Q 012504 354 LIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK-LEPELGANYVLAASVSSLSGNWDTAAELMV 430 (462)
Q Consensus 354 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (462)
-+++.+.+++.... +.....|..|.-.|.+- ++ ++..+.++.... .+ .-.+++++..+.-|.+..=+|.
T Consensus 1294 yFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp-~km~EHl~LFwsRvN------ipKviRA~eqahlW~ElvfLY~ 1365 (1666)
T KOG0985|consen 1294 YFEELISLLEAGLGLERAHMGMFTELAILYSKY-KP-EKMMEHLKLFWSRVN------IPKVIRAAEQAHLWSELVFLYD 1365 (1666)
T ss_pred cHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CH-HHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766521 33444555555555443 23 333333333322 11 1135566666666666666555
Q ss_pred HH
Q 012504 431 AI 432 (462)
Q Consensus 431 ~~ 432 (462)
.-
T Consensus 1366 ~y 1367 (1666)
T KOG0985|consen 1366 KY 1367 (1666)
T ss_pred hh
Confidence 43
No 103
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=2.8e-05 Score=64.27 Aligned_cols=250 Identities=15% Similarity=0.076 Sum_probs=162.3
Q ss_pred HHhcCChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHH-
Q 012504 146 YAACKEIDVAKAVFEEMPV--RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGE- 222 (462)
Q Consensus 146 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~- 222 (462)
+.-.|++..++..-+.... .+...-.-+.++|...|.+..... +.+... .|....+..+.......++.+...
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 3344566665555444432 233334445566666666554332 222222 334444444444444444444433
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012504 223 SIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD 302 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 302 (462)
.+.+.+.......+......-...|+..|++++|.+..+. -.+......=+..+.+..+++-|.+.+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 3344444443344444444556678899999999999888 334444444466777888999999999999863 25
Q ss_pred HHHHHHHHHHhhc----cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 012504 303 SISFSAILSACSH----LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRS 376 (462)
Q Consensus 303 ~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 376 (462)
..|.+.|..++.+ .+...+|.-+|+++.. ..+|++.+.+...-++...|++++|..++++... ..++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5677777777654 4568899999999976 5788888999888889999999999999998743 356777777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++..-...|...+...+.+.......|..+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 776666666653666777778888888775
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=3.7e-05 Score=73.34 Aligned_cols=354 Identities=10% Similarity=0.004 Sum_probs=210.5
Q ss_pred CchhhhhhHh---hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHC-C--------CCCC
Q 012504 33 HNTCIISRFI---LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-G--------LRPD 100 (462)
Q Consensus 33 ~~~~~~~~ll---~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~ 100 (462)
-|..+-.+++ ++-.-|+++.|.+-...+ .+...|..|.+.+.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I---kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI---KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH---hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 3566666777 455556999998887777 45678999999999999999888887777542 1 1222
Q ss_pred cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC-ChhhHHHHHHHHHc
Q 012504 101 NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR-DVVSWSSMIAGFVA 179 (462)
Q Consensus 101 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~ 179 (462)
.+=.-+.-.....|.+++|+.+|++..+.+ .|=..|-..|.+++|.++-+.-..- =..||..-...+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222223333467899999999999887763 3445677889999998887654321 22356666666667
Q ss_pred CCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHH
Q 012504 180 CDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKV 259 (462)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 259 (462)
.++.+.|++.|++... |--..+..|. .++...+++.+.+ .+...|.--..-....|+.+.|+.+
T Consensus 871 r~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHH
Confidence 7889999998876432 1111111111 1222222222222 2334555555556677888888888
Q ss_pred HhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC-CC--
Q 012504 260 FNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN-IK-- 336 (462)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~-- 336 (462)
|...+. |-++++..|-.|+.++|-++-++- -|......+.+.|...|++.+|..+|.+...-.+ +.
T Consensus 935 Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlc 1003 (1416)
T KOG3617|consen 935 YSSAKD-----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLC 1003 (1416)
T ss_pred HHHhhh-----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876543 566677777788888887765542 2555566677778888888888888777642100 00
Q ss_pred CchhHHHHHHHHHHhc--CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----------HhcCC-
Q 012504 337 PTMEHYGCMVDMLGRA--GLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLL----------LKLEP- 403 (462)
Q Consensus 337 ~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~----------~~~~p- 403 (462)
.....-..|....... .+.-.|.++|++.+.. +...+..|-+.|.+ .+|.++.=+- ..+.|
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~-~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMI-GKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcch-HHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 0000001122222111 2333445555555421 12223446666666 6555543221 12333
Q ss_pred CCCchHHHHHHHHhhcCCHHHHHHHHHHH
Q 012504 404 ELGANYVLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
.||.....-+..+....++++|..++-..
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566677777777888888888776544
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=2.3e-07 Score=72.37 Aligned_cols=101 Identities=7% Similarity=-0.158 Sum_probs=46.0
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 387 (462)
...+...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|+.... +.+...+..+..++...|+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3344444555555555554443 1122344444444444455555555555544421 22344444444444445555
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 388 LYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
++|...++.+.+..|+++..+...+
T Consensus 109 -~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 109 -GLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred -HHHHHHHHHHHHhCCCChHHHHHHH
Confidence 5555555555555554444444333
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.73 E-value=4.2e-05 Score=79.85 Aligned_cols=328 Identities=10% Similarity=-0.065 Sum_probs=205.8
Q ss_pred HHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCC------Cc--cchHhHHHHHHH
Q 012504 76 YAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLD------SD--KYIGNTLLRMYA 147 (462)
Q Consensus 76 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~ 147 (462)
....|+++.+...++.+.......+..........+...|+++++..++......-.. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445666666666555422111112222333344456778999999998887654111 11 112223344566
Q ss_pred hcCChhHHHHHHhcCCC----CCh----hhHHHHHHHHHcCCChhHHHHHHHHhHHCCC---CCC--HHHHHHHHHHHhc
Q 012504 148 ACKEIDVAKAVFEEMPV----RDV----VSWSSMIAGFVACDSPSDALKVFHRMKLANE---SPN--SVTLVSLVSACTS 214 (462)
Q Consensus 148 ~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~ 214 (462)
..|++++|...+++... .+. .+.+.+...+...|++++|...+++.....- .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999998887542 221 2445666677889999999999988764211 111 2344556667888
Q ss_pred ccchHhHHHHHHHHHHh----CCC--c-hHhHHHHHHHHHHhcCChHHHHHHHhhccC------C--ChhhHHHHHHHHH
Q 012504 215 LINVRAGESIHSYAVVN----GLE--L-DVALGTALVEMYSKCGHVEKAFKVFNLMRE------K--NLQSWTIMISGLA 279 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~ 279 (462)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876653 211 1 233455566777888999999998887642 1 1234555667788
Q ss_pred HcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHH
Q 012504 280 DNGRGNYAISLFAKMIQTG--LKPDSI--SF--SAILSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLG 350 (462)
Q Consensus 280 ~~~~~~~a~~~~~~m~~~~--~~p~~~--~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 350 (462)
..|++++|...+.+..... ...... .. ...+..+...|+.+.|..++...... ..... ...+..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHH
Confidence 9999999999998875421 111111 10 11123345578899999987776431 11111 112346677888
Q ss_pred hcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 351 RAGLIEEAYHIIRNMPT-------EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
..|++++|...+++... .. ...+...+..++...|+. +.|...+.++.+.....
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~-~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK-SEAQRVLLEALKLANRT 764 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhCcc
Confidence 99999999999988632 11 123555667788999999 99999999999875443
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=1.8e-05 Score=74.39 Aligned_cols=215 Identities=13% Similarity=0.130 Sum_probs=174.1
Q ss_pred CCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 012504 133 DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSAC 212 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 212 (462)
+|-...-..+...+.+.|-...|..+|+++. .|...+.+|...|+..+|..+..+..+ -+||+..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 3444455677888999999999999999875 788889999999999999999888777 378999998888887
Q ss_pred hcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC---hhhHHHHHHHHHHcCChHHHHH
Q 012504 213 TSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN---LQSWTIMISGLADNGRGNYAIS 289 (462)
Q Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 289 (462)
....-+++|.++.+..-.. ....+.....+.++++++.+.|+.-.+-+ ..+|-.+..+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7766677777777665433 22333344455789999999998766543 4688888888899999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 290 LFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 290 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.|..-... .|+ ...|+.+-.+|.+.++-.+|...+.+..+. + .-+...|...+....+.|.+++|.+.+.++
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99988764 566 458999999999999999999999999875 4 556778888888999999999999999887
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=6.4e-06 Score=77.33 Aligned_cols=167 Identities=13% Similarity=0.138 Sum_probs=78.1
Q ss_pred HHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHH
Q 012504 209 VSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (462)
+.+......|.+|..+++.+.... .....|..+.+-|...|+++.|.++|-+.- .++-.|..|.+.|++++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 344445555666666666555543 223344455556666666666666665422 2333455566666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE 368 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 368 (462)
++-.+.. |.......|..-..-.-..|++.+|+++|-.+. .|+ .-|.+|-+.|..++.+++.++-...
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChh
Confidence 5544332 222223334333334445555555555543331 122 1234455555555555555443222
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 369 PNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
.-..|...+..-+-..|+. +.|+..|
T Consensus 880 ~l~dt~~~f~~e~e~~g~l-kaae~~f 905 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDL-KAAEEHF 905 (1636)
T ss_pred hhhHHHHHHHHHHHhccCh-hHHHHHH
Confidence 2223333344444444444 4444433
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=1.6e-06 Score=67.68 Aligned_cols=110 Identities=9% Similarity=-0.064 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 323 KNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+.++++..+ +.|+ .+..+...+...|++++|...|+.... +.+...|..+..++...|++ +.|...|+++.+
T Consensus 13 ~~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY-TTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-HHHHHHHHHHHh
Confidence 345555553 3454 355667788899999999999988643 45778888889999999999 999999999999
Q ss_pred cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 401 LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 401 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+|+++..+..++.++...|++++|+..|+...+..+.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999988876654
No 110
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=1.9e-05 Score=70.20 Aligned_cols=126 Identities=10% Similarity=0.060 Sum_probs=58.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHHhccc-chHhHHHHHHHHHHhCCCchHhHHHHHHHH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLANESPNS-VTLVSLVSACTSLI-NVRAGESIHSYAVVNGLELDVALGTALVEM 246 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (462)
++..+-..+...+..++|+.++.++.+. .|+. ..|+.-..++...| +++++...++.+.+.. +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444444555556666666666666653 3333 23333333333444 3455555555555544 3344444444333
Q ss_pred HHhcCCh--HHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 247 YSKCGHV--EKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 247 ~~~~~~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
+.+.|+. +++..+++++.+ .|..+|+...-++...|+++++++.++++++.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333331 333444444332 23334444444444444444444444444444
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00031 Score=68.78 Aligned_cols=279 Identities=9% Similarity=0.033 Sum_probs=179.7
Q ss_pred HHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhH
Q 012504 75 AYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDV 154 (462)
Q Consensus 75 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (462)
....++-+++|..+|+..- .+......++. ..+.+++|.++-+.. ..+..|..+..+-...|.+.+
T Consensus 1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHH
Confidence 3444555666666666532 23333334443 235566665554432 245678899999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC
Q 012504 155 AKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234 (462)
Q Consensus 155 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (462)
|++-|-+. .|+..|..++....+.|.|++-.+++...++..-.|...+ .++-+|++.+++.+.+.++ .-
T Consensus 1123 AieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AG 1191 (1666)
T ss_pred HHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cC
Confidence 98887554 4667888999999999999999999888877766665554 5778888888877655543 13
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccC------------------------CChhhHHHHHHHHHHcCChHHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMRE------------------------KNLQSWTIMISGLADNGRGNYAISL 290 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (462)
|+......+.+-|...|.++.|.-+|..... .+..+|...-.+|...+.+.-|
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH---
Confidence 4555555555555555555555555444331 2456777777777766655433
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 012504 291 FAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNM---- 365 (462)
Q Consensus 291 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 365 (462)
+|...++.....-...++..|...|-+++.+.+++... |+.. ..-.|+.|.-.|.+- ++++..+.++-.
T Consensus 1269 --QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRv 1342 (1666)
T KOG0985|consen 1269 --QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRV 1342 (1666)
T ss_pred --HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhc
Confidence 33334445556677889999999999999999988776 5443 355677777777664 455555544332
Q ss_pred CCC------CCHHHHHHHHHHHHHcCCh
Q 012504 366 PTE------PNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 366 ~~~------~~~~~~~~l~~~~~~~~~~ 387 (462)
..+ .....|..+.-.|.+-..+
T Consensus 1343 NipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1343 NIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 211 2345677777777776666
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=9.7e-06 Score=76.17 Aligned_cols=188 Identities=11% Similarity=0.020 Sum_probs=119.6
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012504 233 LELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA 312 (462)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 312 (462)
++|-......+...+.+.|-...|..+|+++ ..|...|.+|+..|+..+|..+..+..++ +|++..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 4555566677888889999999999999874 45667788889999999999888887773 6788888888877
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP-T-EPNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
.....-++.|.++.+..... .-..+.....+.++++++.+.|+.-. . +....+|..+..+..+.++. +.
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~-q~ 537 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE-QA 537 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh-HH
Confidence 66666667777766655332 11111112223455555555555431 1 22345555555555555555 55
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 391 DDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
+...|.....+.|++...|+.+..+|.+.|+..+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 5556655556666665566666666666666666666655555544
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=4.2e-08 Score=54.58 Aligned_cols=32 Identities=34% Similarity=0.489 Sum_probs=22.0
Q ss_pred CCCCccchHhHHHHHHHhcCChhHHHHHHhcC
Q 012504 131 GLDSDKYIGNTLLRMYAACKEIDVAKAVFEEM 162 (462)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 162 (462)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666677777777777777777777776665
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=9e-06 Score=67.11 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR 351 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (462)
..+-..+...|+-+....+....... ..-|.......+......|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555555555555555543332 112333344455555666666666666666654 445556666666666666
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 352 AGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 352 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
.|+++.|..-|.+..+ ..++...+.+...+.-.|+. +.|..++.......+.++.+-..|+.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~-~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL-EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH-HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666666655422 23445556666666666666 66666666666666666666666666666666666666554
Q ss_pred H
Q 012504 430 V 430 (462)
Q Consensus 430 ~ 430 (462)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2.4e-05 Score=74.50 Aligned_cols=233 Identities=12% Similarity=0.036 Sum_probs=116.6
Q ss_pred CcchHHHHHHH--hhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC------------C
Q 012504 100 DNFTYPFVVKA--CGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV------------R 165 (462)
Q Consensus 100 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~ 165 (462)
|..|-..++.. |...|+.+.|.+-++.+. +..+|..+.++|.+..++|-|.-.+-.|.. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 44444444433 455566666655554433 234566666666666666666655555541 0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
+...-....-.....|.+++|..+|.+-+. |..|=..|-..|.|++|.++-+.--...+ -.+|.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 111111222223345556666666655544 22233344455666665555432221111 123333334
Q ss_pred HHHhcCChHHHHHHHhhccCCC-----------------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012504 246 MYSKCGHVEKAFKVFNLMREKN-----------------------LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD 302 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 302 (462)
-+...++.+.|++.|++...+- ...|.--.+-+-..|+.+.|+.++...++
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 4444455566665555443221 11222223333345566666666555443
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
|-.+++..+-+|+.++|-++-++- -|......|.+.|...|++.+|..+|.+..
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334455556667777666655443 234455567777888888888888877653
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=1e-07 Score=53.00 Aligned_cols=32 Identities=25% Similarity=0.582 Sum_probs=22.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 334 NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=7.3e-06 Score=80.27 Aligned_cols=159 Identities=10% Similarity=0.095 Sum_probs=114.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS-ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCM 345 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 345 (462)
++..+..|.....+.|++++|..+++...+. .|+. .....+...+.+.+++++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 4677788888888888888888888888875 5554 4666777788888888888888888875 333446677777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHH
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 423 (462)
..++.+.|++++|..+|+++.. .|+ ..++..+..++...|+. ++|...|+++.+...+-...|..++ ++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~-~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL-WRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 8888888888888888888753 333 67788888888888888 8888888888876554444444332 2344
Q ss_pred HHHHHHHHHhcCC
Q 012504 424 TAAELMVAINQKG 436 (462)
Q Consensus 424 ~A~~~~~~~~~~~ 436 (462)
.-...++.+.-.+
T Consensus 234 ~~~~~~~~~~~~~ 246 (694)
T PRK15179 234 ADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHcCccc
Confidence 4455555554333
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=1e-05 Score=66.75 Aligned_cols=128 Identities=15% Similarity=0.057 Sum_probs=111.1
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 012504 307 SAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP--TEPNAVILRSFLGACRNH 384 (462)
Q Consensus 307 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 384 (462)
..+-..+...|+-+....+...... ..+.+......++....+.|++..|...+++.. .++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 5556677778888888888877654 445556677779999999999999999999984 368999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 385 GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
|+. +.|...+.++.++.|+++.+...++..|.-.|+++.|..++......+.
T Consensus 148 Gr~-~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 148 GRF-DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred cCh-hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999 9999999999999999999999999999999999999999998776544
No 119
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=0.00016 Score=64.37 Aligned_cols=214 Identities=9% Similarity=0.001 Sum_probs=123.8
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC-ChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCCh--HHHH
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCG-HVEKAFKVFNLMREK---NLQSWTIMISGLADNGRG--NYAI 288 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~ 288 (462)
.+..++|.....++++.. +-+..+|+.-..++...| ++++++..++++.+. +..+|+.....+.+.|+. +++.
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 345566666666666654 444555655555555556 467777777766542 334555554444455542 5566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc---CCH----HHHHHH
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA---GLI----EEAYHI 361 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~ 361 (462)
.+++++.+...+ |..+|.....++...|+++++++.++++.+. + +.|...|+.....+.+. |.. ++.+++
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 777777665322 4556666666666677777777777777753 2 33455555554444433 222 345555
Q ss_pred HHhC-CC-CCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC---------------
Q 012504 362 IRNM-PT-EPNAVILRSFLGACRNH----GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG--------------- 420 (462)
Q Consensus 362 ~~~~-~~-~~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------------- 420 (462)
...+ .. +.+...|+.+...+... ++. ..+...+.++.+.+|.++.+...|+..|....
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~-~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSD-PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccc-hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 5333 22 23455666555555552 334 45666777776777777777777777776532
Q ss_pred ---CHHHHHHHHHHHh
Q 012504 421 ---NWDTAAELMVAIN 433 (462)
Q Consensus 421 ---~~~~A~~~~~~~~ 433 (462)
..++|..+++.+.
T Consensus 285 ~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 285 ELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccHHHHHHHHHHHH
Confidence 2366777777773
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=3.6e-05 Score=76.40 Aligned_cols=236 Identities=10% Similarity=0.016 Sum_probs=122.4
Q ss_pred cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcC
Q 012504 101 NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVAC 180 (462)
Q Consensus 101 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (462)
...+..|+..+...+++++|.++.+...+..+ -....|-.+...+...++.+.+..+ .++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 34556666666666777777776665554421 1222233333344555554333222 233333444
Q ss_pred CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 012504 181 DSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVF 260 (462)
Q Consensus 181 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 260 (462)
.++.-+..++..|... .-+...+..+..+|.+.|+.+++..+|+++++.. +.++.+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4454444444444442 2344466666677777777777777777777666 55666667676666666 667776666
Q ss_pred hhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchh
Q 012504 261 NLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTME 340 (462)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 340 (462)
.+. +..+...+++.++.++|.++.... |+. .+.-.++.+.+...-+..--..
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHHHHHHhhhccchhHH
Confidence 553 223555566666666666666541 221 1111122222222112222233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
++..+...|...++|+++..+++.+.. +.+......++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 444455566666667777777766633 234444455555544
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=2.5e-05 Score=64.50 Aligned_cols=154 Identities=10% Similarity=0.059 Sum_probs=112.5
Q ss_pred HHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGK 323 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 323 (462)
+-.|...|+++.+....+.+..+. ..+...++.+++...+++....+ +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455777788777655544332221 01123566777887888777763 346778888889999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHH-HhcCC--HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 324 NYFDEMARVYNIKPTMEHYGCMVDML-GRAGL--IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLL 398 (462)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 398 (462)
..|++..+. .+.+...+..+..++ ...|+ .++|.+++++... +.+...+..+...+...|++ ++|...++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~-~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADY-AQAIELWQKV 170 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 999998863 234577788888764 67777 5899999988743 34677888888899999999 9999999999
Q ss_pred HhcCCCCCchH
Q 012504 399 LKLEPELGANY 409 (462)
Q Consensus 399 ~~~~p~~~~~~ 409 (462)
.+..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99888776443
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=1.5e-05 Score=68.61 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=41.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC-H---HHHHHHHHHHhcccchHhHHHHHHHHHHhC
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN-S---VTLVSLVSACTSLINVRAGESIHSYAVVNG 232 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 232 (462)
....+..+...+...|++++|...|+++.... |+ . ..+..+..++...|++++|...++.+.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 45566666667777777777777777766542 32 1 344555666666677777777777666553
No 123
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=1.7e-05 Score=76.98 Aligned_cols=375 Identities=10% Similarity=-0.023 Sum_probs=203.9
Q ss_pred CHHHHHHHhccCCC-CCC-cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHH
Q 012504 49 SLHFTRSLFNNLPV-TPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSL 126 (462)
Q Consensus 49 ~~~~A~~~~~~~~~-~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 126 (462)
+...|...|-+.-. .|+ ...|..|...|...-+...|.+.|+...+-+.. |..........|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55555555533222 122 335777888887777788888888888765432 566677777888888888888877322
Q ss_pred HHHhCC-CCccchHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 127 IFKVGL-DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 127 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
.-+... ..-...|..+.-.|.+.++...|+.-|+.... .|...|..+..+|...|++..|+++|.+... +.|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh
Confidence 222110 00111222233346677888888888877653 3677888899999999999999999988776 45554
Q ss_pred HHHHH--HHHHHhcccchHhHHHHHHHHHHhC------CCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---------
Q 012504 203 VTLVS--LVSACTSLINVRAGESIHSYAVVNG------LELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--------- 265 (462)
Q Consensus 203 ~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------- 265 (462)
. |.. ..-.-+..|.+.++...+..+.... ...-..++-.+...+...|-..+|..++++-.+
T Consensus 630 ~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 K-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred H-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 3 222 1222346688888888777766532 011112222222222223333333333332221
Q ss_pred --CChhhHHHHHHHHHHcCChH------HHHHHH-HHHHHCCCC--------------------CCHHHHHHHHHHhhc-
Q 012504 266 --KNLQSWTIMISGLADNGRGN------YAISLF-AKMIQTGLK--------------------PDSISFSAILSACSH- 315 (462)
Q Consensus 266 --~~~~~~~~l~~~~~~~~~~~------~a~~~~-~~m~~~~~~--------------------p~~~~~~~ll~~~~~- 315 (462)
.+...|-.+..+|.---+.+ ....++ .+....+.. .+..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 12222222222211100000 000011 111111111 122233333332222
Q ss_pred -------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC
Q 012504 316 -------LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP--TEPNAVILRSFLGACRNHGQ 386 (462)
Q Consensus 316 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 386 (462)
..+...|...++...+. -..+..+|+.|.-. ...|++.-|...|-.-. .+....+|..+...+....+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 12233555666555542 12234445544433 45566666666654432 23456677777777777888
Q ss_pred hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 387 VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 387 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
+ +-|...|.+++.+.|.+...|...+.+-...|+.-++..++.-
T Consensus 866 ~-E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 866 F-EHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred H-HHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8 8888888888888888887787777777778887777777764
No 124
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=0.00011 Score=71.80 Aligned_cols=409 Identities=11% Similarity=-0.005 Sum_probs=235.0
Q ss_pred HHHHHHHHHHhCCCCchhhhhhHh--hhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHH
Q 012504 19 LHQLHTLFLKTSLDHNTCIISRFI--LTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 94 (462)
Q Consensus 19 a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 94 (462)
+..++..+....+.++....=+.+ +++-+.+...|.+.|++.-+- .+..++......|++..+++.|..+.-..-+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 333344444444555544333333 233333788888888765432 6778899999999999999999998433322
Q ss_pred CCCC-CCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChh-hHHH
Q 012504 95 TGLR-PDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVV-SWSS 172 (462)
Q Consensus 95 ~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 172 (462)
.... .-...|..+--.+-..++...+..-|+...+..+ -|...|..+..+|.++|++..|.++|.+...-++. .|..
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 2100 0111222222235677888899998988887753 37788999999999999999999999887754332 2222
Q ss_pred H--HHHHHcCCChhHHHHHHHHhHHC------CCCCCHHHHHHHHHHHhcccc-------hHhHHHHHHHHHHhCCCchH
Q 012504 173 M--IAGFVACDSPSDALKVFHRMKLA------NESPNSVTLVSLVSACTSLIN-------VRAGESIHSYAVVNGLELDV 237 (462)
Q Consensus 173 l--~~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 237 (462)
. .-.-+..|.+.+++..+...... +...-..++..+...+...|= ++.+.+.+.-...+....+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 2 22334578899999888876542 111112223222222222222 22333333333322222222
Q ss_pred hHHHHHHHHHH-----------------------hcCCh---H---HHHHHHhhcc--CCChhhHHHHHHHHHH----c-
Q 012504 238 ALGTALVEMYS-----------------------KCGHV---E---KAFKVFNLMR--EKNLQSWTIMISGLAD----N- 281 (462)
Q Consensus 238 ~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~--~~~~~~~~~l~~~~~~----~- 281 (462)
..|-.+.+++. ..+.. + -+.+.+-.-. ..+..+|..++..|.+ .
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC
Confidence 22222222111 11111 1 0001110000 0134456666655544 1
Q ss_pred ---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH
Q 012504 282 ---GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 282 ---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 358 (462)
.+...|+..+++.++.. ..+..+++.|.- ....|++.-+...|-+-.. ..+....+|..+.-.+.+..+++-|
T Consensus 794 et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHh
Confidence 23346778888777642 234556666554 4556777777777665543 3455678898898889999999999
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--C---CCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 359 YHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL--E---PELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 359 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
...|..... +.+...|-.........|+. -++..+|..-... . -.....+..........|+.++-+..-++
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~i-i~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRI-IERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHH-HHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 999998864 33556675555556678888 7788888874433 2 22233455556666778888877776666
Q ss_pred Hh
Q 012504 432 IN 433 (462)
Q Consensus 432 ~~ 433 (462)
+.
T Consensus 949 i~ 950 (1238)
T KOG1127|consen 949 IS 950 (1238)
T ss_pred hh
Confidence 54
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.50 E-value=2.2e-06 Score=66.58 Aligned_cols=94 Identities=15% Similarity=0.082 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
...+...+...|++++|.+.++.+.. +.+...+..+...+...|++ +.|...++.+.+..|+++..+..++.+|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY-EEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 33444445555555555555544421 22344444455555555555 5555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHhcCC
Q 012504 420 GNWDTAAELMVAINQKG 436 (462)
Q Consensus 420 g~~~~A~~~~~~~~~~~ 436 (462)
|++++|.+.|+...+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 99 GEPESALKALDLAIEIC 115 (135)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 55555555555554443
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=5.3e-05 Score=62.73 Aligned_cols=243 Identities=9% Similarity=0.048 Sum_probs=159.0
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHH
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEK 255 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (462)
-+.-.|++..++..-...... +.+...-.-+-++|...|....... ++.... .|.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 344457777777665554432 1344444445667766666544322 222222 3444444444444444444444
Q ss_pred HH-HHHhhccCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 012504 256 AF-KVFNLMREK----NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMA 330 (462)
Q Consensus 256 a~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 330 (462)
-. ++.+.+..+ +......-...|+..|++++|++...... ..+... .=+..+.+..+.+-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAA--LNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333333332 22333344567899999999999887621 222222 23344668889999999999997
Q ss_pred HhcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 331 RVYNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
+- .+..+.+.|..++.+ .+...+|.-+|+++.. .|++.+.+....++...|++ ++|+.+++.++...+.
T Consensus 165 ~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~-eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 165 QI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY-EEAESLLEEALDKDAK 239 (299)
T ss_pred cc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH-HHHHHHHHHHHhccCC
Confidence 52 345567777777654 4568999999999965 58999999999999999999 9999999999999999
Q ss_pred CCchHHHHHHHHhhcCCHHHHH-HHHHHHhcC
Q 012504 405 LGANYVLAASVSSLSGNWDTAA-ELMVAINQK 435 (462)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 435 (462)
++.+...++-+-...|.-.++. +.+..++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999998888777888765544 455555543
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=7.3e-05 Score=75.39 Aligned_cols=230 Identities=13% Similarity=0.146 Sum_probs=150.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHC-CCCCCH---HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLA-NESPNS---VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGT 241 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (462)
+...|-..|......++.++|.++.++.... ++.-.. ..|.++++.-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3445666666677777777777777776543 211111 234444444444456666777777777652 3345677
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccC
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSISFSAILSACSHLG 317 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 317 (462)
.|...|.+.+.+++|.++++.|.+. ....|...+..+.++++-+.|..++.++.+.-.+- ........+..-.+.|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 7888888888888888888888753 45678888888888888888888888877652211 1223444445556778
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C--C--CHHHHHHHHHHHHHcCChHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-E--P--NAVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~--~~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
+.+++..+|+..... .+--...|+.+++.-.+.|+.+.++.+|+++.. . | --..|...+.---++|+- ..++
T Consensus 1615 DaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde-~~vE 1691 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE-KNVE 1691 (1710)
T ss_pred CchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch-hhHH
Confidence 888888888888863 344567888888888888888888888888743 1 1 123444445444566776 6666
Q ss_pred HHHHHHHh
Q 012504 393 NLGKLLLK 400 (462)
Q Consensus 393 ~~~~~~~~ 400 (462)
.+-.++.+
T Consensus 1692 ~VKarA~E 1699 (1710)
T KOG1070|consen 1692 YVKARAKE 1699 (1710)
T ss_pred HHHHHHHH
Confidence 66555543
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=0.00015 Score=72.12 Aligned_cols=236 Identities=9% Similarity=0.090 Sum_probs=133.6
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchH-HHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHH
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTY-PFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTL 142 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (462)
.+...|..|+..+...+++++|.++.+...+. .|+...+ -.+...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 55666777888887788888888888766654 3443332 2222234445554444333 12
Q ss_pred HHHHHhcCChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHh
Q 012504 143 LRMYAACKEIDVAKAVFEEMPV--RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRA 220 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 220 (462)
++......++.-...+...+.. .+..++..+..+|-+.|+.+++..+|+++.+.. +-|....+.+...++.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2222222233222222222221 133466677777888888888888888887765 44667777777777777 7777
Q ss_pred HHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CC
Q 012504 221 GESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQT-GL 299 (462)
Q Consensus 221 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~ 299 (462)
|.+++.+.+.. |...+++..+.+++.++..-++.-+.. -..+.+.+... |.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~-------------f~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDF-------------FLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchH-------------HHHHHHHHHhhhcc
Confidence 77777766654 455667777777777776544432222 22222222222 11
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 300 KPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
.--..++-.+-..|...++++++..+++.+.+. -+-|.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 122334445556667777788888888887752 2223444555555553
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.00018 Score=64.98 Aligned_cols=205 Identities=9% Similarity=0.042 Sum_probs=90.1
Q ss_pred HHHHhhc-ChhHHHHHHHHHH---HhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCC-----CCcccHHHHHHHHHh
Q 012504 8 TLIQLSK-TVHHLHQLHTLFL---KTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVT-----PPLFAYNTLIRAYAK 78 (462)
Q Consensus 8 ~~l~~~~-~~~~a~~~~~~~~---~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~-----~~~~~y~~li~~~~~ 78 (462)
.+|...| ++...-+.|+.+. ..|-.|+....+|=+ . -.++.+++..-+.+|.. |+...+...+.+...
T Consensus 210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPl--p-~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~ 286 (484)
T COG4783 210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPL--P-EERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE 286 (484)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCC--c-hhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence 3444544 4444455555555 345555555555555 1 12677777777777643 444445555554443
Q ss_pred CCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHH
Q 012504 79 TSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAV 158 (462)
Q Consensus 79 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 158 (462)
...-..+..++..-.+. .-...-|..-+. ....|+.+.|+..+..++..- +-|...+....+.+.+.++.++|.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 287 ALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred cccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 33333333322222210 111222222222 224455555555555554442 22333333344444444444444444
Q ss_pred HhcCCC--CC-hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHh
Q 012504 159 FEEMPV--RD-VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRA 220 (462)
Q Consensus 159 ~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 220 (462)
++++.. |+ ...+-.+..++.+.|++.+|+.+++..... .+-|+..|..|..+|...|+..+
T Consensus 363 ~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 363 LKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHH
Confidence 444432 21 223333444444444444444444444333 13344444444444444444333
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.00015 Score=65.48 Aligned_cols=123 Identities=17% Similarity=0.103 Sum_probs=77.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~ 382 (462)
-|..-+. +...|.+++|+..++.+.. ..+-|+..+....+.+.+.|+.++|.+.++++.. .|+ ...+-.+..++.
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 3444433 3345677777777777665 3344455555666677777777777777776643 344 444555666777
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
+.|++ ++|+..++......|+++..|..|+.+|...|+..+|.....+
T Consensus 386 ~~g~~-~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 386 KGGKP-QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred hcCCh-HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 77777 7777777777777777777777777777666665555544433
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.39 E-value=0.0017 Score=59.54 Aligned_cols=364 Identities=14% Similarity=0.067 Sum_probs=193.1
Q ss_pred CCchhhhhhHhhhhhcC--CHHHHHHHhccCCCC-C-CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHH
Q 012504 32 DHNTCIISRFILTSLSI--SLHFTRSLFNNLPVT-P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFV 107 (462)
Q Consensus 32 ~~~~~~~~~ll~~~~~~--~~~~A~~~~~~~~~~-~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 107 (462)
+-|...|+.|| +.++ ..+++++.++++-.. | +...|..-|+.-....+++....+|.+.+..- .+...|..-
T Consensus 17 P~di~sw~~li--re~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLI--REAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHH--HHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45888999999 5555 899999999888544 4 45567777999999999999999999988753 356666666
Q ss_pred HHHhhh-hcCchhHHH----HHHHH-HHhCCCCcc-chHhHHHHH---------HHhcCChhHHHHHHhcCCC-C-----
Q 012504 108 VKACGR-CLLIGIGGS----VHSLI-FKVGLDSDK-YIGNTLLRM---------YAACKEIDVAKAVFEEMPV-R----- 165 (462)
Q Consensus 108 l~~~~~-~~~~~~a~~----~~~~~-~~~~~~~~~-~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~-~----- 165 (462)
++-..+ .++...... .|+-. .+.|+.+-. .+|+..+.. |....+++...++++++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 654333 244444332 23322 234544433 345555543 3344567788888888763 2
Q ss_pred ----ChhhHHHHHHH-------HHcCCChhHHHHHHHHhHH--CCCCCCHH---------------HHHHHHHH------
Q 012504 166 ----DVVSWSSMIAG-------FVACDSPSDALKVFHRMKL--ANESPNSV---------------TLVSLVSA------ 211 (462)
Q Consensus 166 ----~~~~~~~l~~~-------~~~~~~~~~a~~~~~~m~~--~~~~p~~~---------------~~~~l~~~------ 211 (462)
|-..|..=|+. --+...+-.|.++++++.. .|+..+.. .|..+|.-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 11122111111 1122344455555555432 12111100 01111111
Q ss_pred -------------------------------------------Hhcccc-------hHhHHHHHHHHHHhCCCchHhHHH
Q 012504 212 -------------------------------------------CTSLIN-------VRAGESIHSYAVVNGLELDVALGT 241 (462)
Q Consensus 212 -------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 241 (462)
+...|+ .+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 112222222222211111222222
Q ss_pred HHHHHHHhc---CChHHHHHHHhhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHh
Q 012504 242 ALVEMYSKC---GHVEKAFKVFNLMRE----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSISFSAILSAC 313 (462)
Q Consensus 242 ~l~~~~~~~---~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 313 (462)
.+...--.. +..+.....++++.. .-..+|..+++.-.+......|..+|.++.+.+..+ +...+++++..+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 221111000 012223333333321 112356666666666677777777777777766555 555666677655
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCChH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE-----PNAVILRSFLGACRNHGQVL 388 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 388 (462)
+. ++.+.|.++|+.=.+.+| .++..-...++-+...|+-..+..+|++...+ ....+|..++.--..-|+.
T Consensus 413 cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL- 488 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL- 488 (656)
T ss_pred hc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH-
Confidence 54 666777777776665432 23334445566666677777777777776432 1246777777777777777
Q ss_pred HHHHHHHHHHHhcCC
Q 012504 389 YLDDNLGKLLLKLEP 403 (462)
Q Consensus 389 ~~a~~~~~~~~~~~p 403 (462)
..+..+-++.....|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 666666666554444
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=6.6e-06 Score=63.21 Aligned_cols=97 Identities=8% Similarity=-0.125 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMP--TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
....-.+...+...|++++|..+|+-+. .+.+...|..|.-++...|++ .+|+..+..+..++|+++.++..++.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~-~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW-GEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444556666778999999999998863 245677888889899999999 9999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHhcCC
Q 012504 417 SLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~ 436 (462)
...|+.+.|.+.|+..+...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999877543
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.37 E-value=0.0028 Score=61.64 Aligned_cols=410 Identities=12% Similarity=0.052 Sum_probs=190.4
Q ss_pred cChhHHHHHHHHHHHh-CCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHH
Q 012504 14 KTVHHLHQLHTLFLKT-SLDHNTCIISRFILTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFD 90 (462)
Q Consensus 14 ~~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~ 90 (462)
+++..|.+-...+.++ +=.+-..++.++. -...|..++|..+++..... .|..|...+-.+|...|+.++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLs-l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALS-LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHH-HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4555555555554443 2233333333333 12234666666666555332 455566666666666777777777777
Q ss_pred HHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCC----------hhHHHHHHh
Q 012504 91 EMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE----------IDVAKAVFE 160 (462)
Q Consensus 91 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~ 160 (462)
..... -|+..-...+..+|.+.+++.+-.++--++-+. .+-+...+=.+++.....-. +.-|.+.++
T Consensus 102 ~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 66653 345555556666666666555444433333332 23344444444444433211 122344444
Q ss_pred cCCCCC-----hhhHHHHHHHHHcCCChhHHHHHHHH-hHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC
Q 012504 161 EMPVRD-----VVSWSSMIAGFVACDSPSDALKVFHR-MKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234 (462)
Q Consensus 161 ~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (462)
.+.+.+ ..-...-...+-..|++++|+.++.. ..+.-...+...-+.-+..+...++|.+..++-.++...| .
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-~ 257 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-N 257 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-C
Confidence 443322 00011111223345667777777633 2222222233333445555666677777777777776665 2
Q ss_pred chHhHHHHHHHHHH----------------hcCChHHHHHHHhhccCC-ChhhHHHHHHH---HHHcCChHHHHHHHHHH
Q 012504 235 LDVALGTALVEMYS----------------KCGHVEKAFKVFNLMREK-NLQSWTIMISG---LADNGRGNYAISLFAKM 294 (462)
Q Consensus 235 ~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~m 294 (462)
.| |...++.+. ..+..+...+..++.... .-..|-+-+.+ +-.-|+.+++...|-+-
T Consensus 258 Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 258 DD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred cc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 22 222222111 112222222222222211 01112222222 22345666554433221
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchh-------HHHHHHHHHHhcCC-----HHHHHHHH
Q 012504 295 IQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTME-------HYGCMVDMLGRAGL-----IEEAYHII 362 (462)
Q Consensus 295 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~A~~~~ 362 (462)
-|-.| .|..=+..|...=..+.-..++...... .++.. -+.+.+..-.-.|. -+.-..++
T Consensus 335 --fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~ 406 (932)
T KOG2053|consen 335 --FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYV 406 (932)
T ss_pred --hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHH
Confidence 12121 1222222222222223333333333211 11111 01111111111121 11111122
Q ss_pred HhC--------C--CC--CC---------HHHHHHHHHHHHHcCChH--HHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 363 RNM--------P--TE--PN---------AVILRSFLGACRNHGQVL--YLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 363 ~~~--------~--~~--~~---------~~~~~~l~~~~~~~~~~~--~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
.+. . .. |. ..+.+.|+..+.+.++.. -+|+-+++......|.+..+-..++.+|.-.
T Consensus 407 ~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~l 486 (932)
T KOG2053|consen 407 RKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYL 486 (932)
T ss_pred HHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHh
Confidence 111 0 00 11 124556777888877761 4577778888888999998888999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcc
Q 012504 420 GNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 420 g~~~~A~~~~~~~~~~~~~~ 439 (462)
|-+..|.++|+.+.-++|..
T Consensus 487 Ga~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 487 GAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred cCChhHHHHHHhcchHHhhh
Confidence 99999999999887666654
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.35 E-value=8.3e-07 Score=50.25 Aligned_cols=35 Identities=43% Similarity=0.712 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc
Q 012504 67 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN 101 (462)
Q Consensus 67 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 101 (462)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998874
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=2.6e-05 Score=70.79 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGL 318 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 318 (462)
....|+..+...++++.|+.+|+++.+.++.....+++.+...++-.+|.+++++..... +-+...+..-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 445667777788999999999999998888888888999999999999999999998763 3355566666677889999
Q ss_pred HHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012504 319 VDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT 367 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 367 (462)
.+.|..+.+++.. ..|+ ..+|..|..+|.+.|+++.|+-.++.++.
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999985 3554 77999999999999999999999999865
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=1.5e-05 Score=72.25 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=101.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-E-PNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~ 382 (462)
....++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+... . .+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455666667778899999999998764 354 445577888888888889888887643 2 35666666677789
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+.++. +.|..+.+++.+..|++..+|..|+.+|...|++++|+-.++.+..
T Consensus 246 ~k~~~-~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKY-ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999 9999999999999999999999999999999999999999998863
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.31 E-value=1e-06 Score=49.43 Aligned_cols=34 Identities=41% Similarity=0.732 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCC
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP 99 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 99 (462)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00049 Score=67.79 Aligned_cols=142 Identities=10% Similarity=0.120 Sum_probs=116.9
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 012504 233 LELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD-SISFSA 308 (462)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ 308 (462)
.+.++..+..|..+..+.|.+++|..+++...+ | +......++..+.+.+++++|...+++..+. .|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688889999999999999999999999875 4 4567888899999999999999999999986 444 556777
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFL 378 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~ 378 (462)
+..++...|++++|..+|+++.. ..+-+..++..+..++...|+.++|...|+.... .|...-|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 77888999999999999999986 3334478899999999999999999999999843 35555555444
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.30 E-value=0.0022 Score=58.82 Aligned_cols=138 Identities=8% Similarity=0.078 Sum_probs=89.8
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCC
Q 012504 53 TRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGL 132 (462)
Q Consensus 53 A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 132 (462)
+++..+.-| -|+.+|+.||+-+... .++++.+.++++... .+-....|..-++.-...++++..+.+|.+.+..-+
T Consensus 9 ~~~rie~nP--~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL 84 (656)
T KOG1914|consen 9 PRERIEENP--YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL 84 (656)
T ss_pred HHHHHhcCC--ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 344445544 4899999999988777 899999999999864 333567788889988899999999999999887754
Q ss_pred CCccchHhHHHHHHH-hcCChhH----HHHHHhcCC------CCChhhHHHHHHH---------HHcCCChhHHHHHHHH
Q 012504 133 DSDKYIGNTLLRMYA-ACKEIDV----AKAVFEEMP------VRDVVSWSSMIAG---------FVACDSPSDALKVFHR 192 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~-~~~~~~~----A~~~~~~~~------~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~ 192 (462)
. ...|..-++--- ..|.... ..+.|+-.. -.+...|+..+.- |....+++.+.++|.+
T Consensus 85 n--lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 85 N--LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred h--HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 4 445554444222 2333333 222222221 2344456655542 3334456677778887
Q ss_pred hHHC
Q 012504 193 MKLA 196 (462)
Q Consensus 193 m~~~ 196 (462)
+...
T Consensus 163 al~t 166 (656)
T KOG1914|consen 163 ALVT 166 (656)
T ss_pred HhcC
Confidence 7753
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=3.4e-05 Score=59.83 Aligned_cols=113 Identities=11% Similarity=-0.045 Sum_probs=85.2
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 012504 290 LFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT- 367 (462)
Q Consensus 290 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 367 (462)
.+++.... .|+ ......+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|...++....
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455543 333 344556667777888999999999888763 244677888888888889999999988887632
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 368 -EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 368 -~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
+.+...+..+...+...|+. +.|...++++.+..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEP-ESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhccccch
Confidence 34567777788888999999 9999999999999988764
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.0005 Score=56.68 Aligned_cols=127 Identities=15% Similarity=0.175 Sum_probs=71.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 280 DNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 280 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
..|++++|+++++...+.+ +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 3466666666666666554 22344444433344445555566666666655 45666677777777777777777777
Q ss_pred HHHHhCCC-CC-CHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 360 HIIRNMPT-EP-NAVILRSFLGACRN---HGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 360 ~~~~~~~~-~~-~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
-.++++.- .| ++..+..+...+.- ..+. ..+..++.++.++.|.+...+.
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~-~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL-ELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhChHhHHHHH
Confidence 77766521 23 34444444444332 2334 5667777777777765443333
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.0001 Score=60.55 Aligned_cols=186 Identities=12% Similarity=0.084 Sum_probs=141.0
Q ss_pred HhcCChHHHHHHHhhccC--------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhccC
Q 012504 248 SKCGHVEKAFKVFNLMRE--------KNL-QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAI-LSACSHLG 317 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~ 317 (462)
....+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++.+. + |...-...+ .--+...|
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhh
Confidence 345678888888887763 122 35666777778899999999999999887 3 443322221 22245678
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
.+++|+++++.+..+ -+.|..++-.-+-..-..|+.-+|++-+.+... ..|...|..+...|...|++ +.|.-.+
T Consensus 101 ~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f-~kA~fCl 177 (289)
T KOG3060|consen 101 NYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF-EKAAFCL 177 (289)
T ss_pred chhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH-HHHHHHH
Confidence 999999999999975 244566666666666677887788877766533 36899999999999999999 9999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHhhcC---CHHHHHHHHHHHhcCCCc
Q 012504 396 KLLLKLEPELGANYVLAASVSSLSG---NWDTAAELMVAINQKGLN 438 (462)
Q Consensus 396 ~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~ 438 (462)
+++.=..|-++-.+..++..+.-.| +.+-|.++|.+..+.+..
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 9999999999988889999876554 566788999988877653
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.17 E-value=2.2e-05 Score=56.38 Aligned_cols=95 Identities=15% Similarity=0.053 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
.+..+...+...|++++|...++++.. +.+...+..+...+...+++ +.|...++.+.+..|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY-EEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 345567777888888888888887643 23446677778888888999 999999999999888888888899999999
Q ss_pred cCCHHHHHHHHHHHhcCC
Q 012504 419 SGNWDTAAELMVAINQKG 436 (462)
Q Consensus 419 ~g~~~~A~~~~~~~~~~~ 436 (462)
.|++++|...++...+.+
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 999999999988876544
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=4.3e-06 Score=47.20 Aligned_cols=33 Identities=36% Similarity=0.798 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPD 302 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 302 (462)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688889999999999999999999988888887
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=0.00012 Score=57.41 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=55.9
Q ss_pred cCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCChHH
Q 012504 316 LGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE-PNA----VILRSFLGACRNHGQVLY 389 (462)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~ 389 (462)
.++...+...++.+...++-.+ .......+...+...|++++|...|+.+... |+. .....+...+...|++ +
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~-d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY-D 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH-H
Confidence 4555555555555555321111 1222333445555566666666666555322 222 1223344555566666 6
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
.|...++... ..+-.+..+...+.+|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666654421 1222333455566666666666666666654
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.11 E-value=4.6e-05 Score=57.51 Aligned_cols=94 Identities=12% Similarity=0.007 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT-EPN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL---GANYVLAA 413 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 413 (462)
+..++..+.+.|++++|.+.|+.+.. .|+ ...+..+..++...|++ +.|...++.+....|++ +.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY-ADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34444455555555555555555422 121 23344455555555555 55666666555555443 23455555
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCC
Q 012504 414 SVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.++.+.|++++|.+.++.+.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 55555666666666665555543
No 147
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=5.5e-05 Score=64.27 Aligned_cols=111 Identities=19% Similarity=0.072 Sum_probs=92.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 336 KPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRN--HGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
+-|...|-.|...|...|+++.|..-|.+... .+++..+..+..++.. .+....++..+++++.+.+|.++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 55689999999999999999999999988743 4567777777776543 2233378999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCccCCccceE
Q 012504 412 AASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWV 446 (462)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 446 (462)
|+..+...|++.+|...|+.|.+.....+|..+.|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999887777765543
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.09 E-value=9.1e-06 Score=54.44 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC-CHHHHHHHHHHHhcCC
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG-NWDTAAELMVAINQKG 436 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 436 (462)
++.+|..+...+...|++ +.|+..|+++.+.+|+++.++..++.+|...| ++++|++.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~-~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY-EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 467888899999999999 99999999999999999999999999999999 7999999999887644
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=7.9e-06 Score=45.73 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKP 301 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 301 (462)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467778888888888888888888888777766
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00041 Score=54.38 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHH
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPD--SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGCMVD 347 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~ 347 (462)
..++..+ ..++...+...++.+......-. ....-.+...+...|++++|...|+.+... ...|+ ......|..
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHH
Confidence 3333333 35666666666666665421110 112222334555666777777777666654 22222 123334556
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 348 MLGRAGLIEEAYHIIRNMPTE-PNAVILRSFLGACRNHGQVLYLDDNLGKLL 398 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 398 (462)
.+...|++++|+..++..... .....+......+...|+. +.|...|+++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~-~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDY-DEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCH-HHHHHHHHHh
Confidence 666667777777776665432 2334444555666677777 7776666654
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=6.5e-06 Score=57.61 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHH
Q 012504 353 GLIEEAYHIIRNMPT-EP---NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 353 ~~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (462)
|+++.|+.+++++.. .| +...+..+..++.+.|++ +.|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y-~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY-EEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH-HHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH-HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555555555422 11 223333345555555555 555555555 444444444444555666666666666665
Q ss_pred HHH
Q 012504 429 MVA 431 (462)
Q Consensus 429 ~~~ 431 (462)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 553
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.02 E-value=1.1e-05 Score=53.33 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=51.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+...+...|++ +.|...|+.+.+..|+++..+..++.++...|++++|..+|+++.+..+
T Consensus 3 ~a~~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDY-DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHH-HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45678888999 9999999999999999999999999999999999999999998876554
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=3.8e-05 Score=69.91 Aligned_cols=105 Identities=10% Similarity=-0.086 Sum_probs=86.9
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 387 (462)
...+...|+++.|...|+++.+. -+.+...|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44566789999999999999863 334577888899999999999999999998743 34677888889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 012504 388 LYLDDNLGKLLLKLEPELGANYVLAASVSS 417 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 417 (462)
+.|...++++.++.|+++.+...+..+..
T Consensus 87 -~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 87 -QTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999877666655433
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.94 E-value=0.00025 Score=53.38 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=62.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN----AVILRSFL 378 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----~~~~~~l~ 378 (462)
++..+...+...|++++|...+..+...+.-.+ ....+..+..++.+.|+++.|.+.|+.+.. .|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344445555666777777777776665321111 133455566677777777777777766532 122 34556666
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
.++...|+. +.|...++++.+..|+++.+
T Consensus 84 ~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDK-EKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCCh-HHHHHHHHHHHHHCcCChhH
Confidence 677777777 77777777777777776543
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.93 E-value=1.3e-05 Score=43.75 Aligned_cols=31 Identities=39% Similarity=0.686 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHHCCC
Q 012504 67 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 97 (462)
Q Consensus 67 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 97 (462)
.+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788888888888888888888888888764
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.92 E-value=9e-05 Score=52.83 Aligned_cols=79 Identities=15% Similarity=0.045 Sum_probs=67.7
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHCCC-CCCcchHHHHHHHhhhhc--------CchhHHHHHHHHHHhCCCCccchHh
Q 012504 70 NTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNFTYPFVVKACGRCL--------LIGIGGSVHSLIFKVGLDSDKYIGN 140 (462)
Q Consensus 70 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (462)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667778999999999999999999 899999999999977642 3556788999999999999999999
Q ss_pred HHHHHHHh
Q 012504 141 TLLRMYAA 148 (462)
Q Consensus 141 ~l~~~~~~ 148 (462)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
No 157
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00044 Score=61.04 Aligned_cols=156 Identities=14% Similarity=0.033 Sum_probs=114.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hhccCcHHHHHHHHHHHHHhcCCCCchhH------------
Q 012504 276 SGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA--CSHLGLVDEGKNYFDEMARVYNIKPTMEH------------ 341 (462)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 341 (462)
.++...|+.++|.+.--..++.. + ...+...+++ +...++.+.+...|++.+ .+.|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 55677889998888776666542 1 1233334433 445678888888888877 44554222
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 342 -YGCMVDMLGRAGLIEEAYHIIRNMPT------EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 342 -~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
+..=..-..+.|++.+|.+.|.+... +|+...|.....+..+.|+. .+|+.--+++.+++|.-...+..-+.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl-~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL-REAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc-hhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 11222335678999999999988743 35667777777788899999 99999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 415 VSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
++...++|++|++-+++..+..-.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999987765433
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.90 E-value=0.014 Score=51.51 Aligned_cols=288 Identities=15% Similarity=0.110 Sum_probs=194.0
Q ss_pred hHhHHHHHHHh--cCChhHHHHHHhcCC---CCChhhHHHHHHH--HHcCCChhHHHHHHHHhHHCCCCCCHHH--HHHH
Q 012504 138 IGNTLLRMYAA--CKEIDVAKAVFEEMP---VRDVVSWSSMIAG--FVACDSPSDALKVFHRMKLANESPNSVT--LVSL 208 (462)
Q Consensus 138 ~~~~l~~~~~~--~~~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l 208 (462)
-|.+|-.+++. .|+-..|.+.-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|... |.... +..|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 45666666644 577777777765543 4466655556543 44579999999999999862 43332 2333
Q ss_pred HHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC-----CChh--hHHHHHHHHH--
Q 012504 209 VSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE-----KNLQ--SWTIMISGLA-- 279 (462)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~-- 279 (462)
.-...+.|+.+.|..+-+..-..- +.-.-.....+...+..|+|+.|+++++.-.. +++. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 344457788888888887776653 33345677889999999999999999987653 3432 2222332211
Q ss_pred -HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 280 -DNGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 280 -~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
-..+...|...-.+..+ +.|+.. .-.....++.+.|+..++-.+++.+-+. .|.+..+... .+.+.|+...
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta~ 312 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDTAL 312 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcHH
Confidence 12356667766665554 466643 3334457788999999999999999764 5555554333 3456666432
Q ss_pred H----HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh-cCCHHHHHHHHHHH
Q 012504 358 A----YHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL-SGNWDTAAELMVAI 432 (462)
Q Consensus 358 A----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 432 (462)
. .+-+..|+ +.+......+..+....|++ ..|..--+.+.+..|... .|..|+.+-.. .|+-.++.+.+-+.
T Consensus 313 dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~-~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLK-PNNAESSLAVAEAALDAGEF-SAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHhccch-HHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHH
Confidence 2 12344444 34566777788888999999 999999999999998865 88888887765 49999999999888
Q ss_pred hcCCCcc
Q 012504 433 NQKGLNK 439 (462)
Q Consensus 433 ~~~~~~~ 439 (462)
++..-.|
T Consensus 390 v~APrdP 396 (531)
T COG3898 390 VKAPRDP 396 (531)
T ss_pred hcCCCCC
Confidence 7766554
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.90 E-value=0.0048 Score=52.84 Aligned_cols=174 Identities=11% Similarity=0.032 Sum_probs=103.9
Q ss_pred HHHHHHhcCChHHHHHHHhhccCC--Ch-h---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 012504 243 LVEMYSKCGHVEKAFKVFNLMREK--NL-Q---SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH- 315 (462)
Q Consensus 243 l~~~~~~~~~~~~a~~~~~~~~~~--~~-~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 315 (462)
....+...|++++|.+.|+.+... +. . ..-.++.++.+.+++++|...+++..+..+.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 444456677888888888777642 21 1 2234566777888888888888888775322222233333333221
Q ss_pred -c---------------Cc---HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 012504 316 -L---------------GL---VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRS 376 (462)
Q Consensus 316 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 376 (462)
. .+ ...|...|+.+.+. |=...-..+|...+..+....-..-+ .
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e~-~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYEL-S 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHHH-H
Confidence 0 11 22344455555443 22222334444444443321111111 3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+..-|.+.|.+ ..|..-++.+.+.-|+.+ .....++.+|...|..++|..+...+..
T Consensus 181 ia~~Y~~~~~y-~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAY-VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCch-HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 45668899999 999999999999888775 4566788899999999999998876543
No 160
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.89 E-value=0.016 Score=56.72 Aligned_cols=227 Identities=10% Similarity=0.011 Sum_probs=114.3
Q ss_pred hhhcCchhHHHHHHHHHHhCCCCccchHhHHHHH--HHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHH
Q 012504 112 GRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRM--YAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDA 186 (462)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 186 (462)
...+++.+|.+....+.+.. |+.. |...+.+ +.+.|..++|..+++.... .|..+...+-.+|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567777777777766653 3332 2222332 3566777777777766653 2566677777777777777777
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012504 187 LKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK 266 (462)
Q Consensus 187 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 266 (462)
..+|++..+. .|+..-...+..+|.+.+++.+-.++--++-+. ++.+...+=+++..+.+... .+
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~------------~~ 161 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIF------------SE 161 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhcc------------CC
Confidence 7777776653 456666666666777666665544444444332 23344444444444433211 11
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTG-LKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCM 345 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 345 (462)
+.... .+. ..-|.+.++.+.+.+ .--+..-...-.......|++++|..++..-....-.+-+...-+.-
T Consensus 162 ~~~~~-~i~--------l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~ 232 (932)
T KOG2053|consen 162 NELLD-PIL--------LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKK 232 (932)
T ss_pred ccccc-chh--------HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 11000 000 112344444444432 11111112222223345566777777663322221222233333445
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 012504 346 VDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~ 365 (462)
++.+...++|.+..++..++
T Consensus 233 ~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHhcChHHHHHHHHHH
Confidence 56666666666666655554
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0091 Score=53.11 Aligned_cols=335 Identities=11% Similarity=-0.032 Sum_probs=174.3
Q ss_pred HHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 74 RAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
..+.+..++..|+..+....+..+. +..-|..-...+...++++++.--.+.-++.... ....+...-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 3466667778888888888876543 3445555555566666666665544444433211 1123334445555555666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCC-CCCHHHHHHHH-HHHhcccchHhHHHHHHHHHHh
Q 012504 154 VAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANE-SPNSVTLVSLV-SACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 154 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
+|.+.|+.- ..+ ....++..++....... +|.-.++..+- .++...|+.++|.++-..+.+.
T Consensus 135 ~A~~~~~~~-----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 135 EAEEKLKSK-----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred HHHHHhhhh-----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 666555511 111 11222222222222111 12223333332 3344566777776666655554
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh---------------hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 232 GLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ---------------SWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
. ..+......=..++.-.++.+.+...|++...-++. .|..-..-..+.|++..|.+.+.+.+.
T Consensus 199 d-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 199 D-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred c-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 3 222222222223344456677777777776643332 122223345567888888888888775
Q ss_pred C---CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC--
Q 012504 297 T---GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-- 369 (462)
Q Consensus 297 ~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-- 369 (462)
. ++.|+...|.....+..+.|+.++|+.--+... .+.|. ...|..-..++...++|++|.+-|+.... ..
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3 345566667666667778888888887777665 33333 33444445566667788888877776522 11
Q ss_pred -CHHHHHHHHHHHHHcCC--h-----------HHHHHH-HHHHHHhcCCCCC--------chHHHHHHHHhhcCCHHHHH
Q 012504 370 -NAVILRSFLGACRNHGQ--V-----------LYLDDN-LGKLLLKLEPELG--------ANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 370 -~~~~~~~l~~~~~~~~~--~-----------~~~a~~-~~~~~~~~~p~~~--------~~~~~l~~~~~~~g~~~~A~ 426 (462)
...++.....++-+..+ + +++-.. +-..++...|+-. .-+..++.+|...++..+..
T Consensus 355 e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~ 434 (486)
T KOG0550|consen 355 EIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRV 434 (486)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 12233222222221111 1 011111 2222333445432 23567888888888888887
Q ss_pred HHHH
Q 012504 427 ELMV 430 (462)
Q Consensus 427 ~~~~ 430 (462)
+...
T Consensus 435 r~ds 438 (486)
T KOG0550|consen 435 RFDS 438 (486)
T ss_pred hccc
Confidence 7653
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00081 Score=59.10 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA-CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
.+|..+++...+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998543 2233344333333 33357778899999999984 4566778888999
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 348 MLGRAGLIEEAYHIIRNMPTE-PN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
.+.+.|+.+.|..+|++.... +. ...|...+.--.+.|+. +....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl-~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL-ESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H-HHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhhhh
Confidence 999999999999999997543 33 35899999988999999 999999999998887754
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0037 Score=55.23 Aligned_cols=191 Identities=12% Similarity=0.108 Sum_probs=102.1
Q ss_pred HHHHHcCCChhHHHHHHHHhHH----CCCCCC-HHHHHHHHHHHhcccchHhHHHHHHHHHHh----CCCch--HhHHHH
Q 012504 174 IAGFVACDSPSDALKVFHRMKL----ANESPN-SVTLVSLVSACTSLINVRAGESIHSYAVVN----GLELD--VALGTA 242 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ 242 (462)
...|...|++++|.+.|.+... .+-+.+ ...|.....++.+ .+++.|...+++.... | .++ ...+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 4445555555555555554421 111000 1123333333322 3566666555554432 2 222 235555
Q ss_pred HHHHHHhc-CChHHHHHHHhhccC----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HH
Q 012504 243 LVEMYSKC-GHVEKAFKVFNLMRE----KN-----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLK-----PDSI-SF 306 (462)
Q Consensus 243 l~~~~~~~-~~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~ 306 (462)
+...|... |++++|++.|++..+ .+ ..++..+...+.+.|++++|.++|++....... .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 66677777 788888888777652 11 235666777888888888888888887764322 1221 22
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHhc-CCCCc--hhHHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 012504 307 SAILSACSHLGLVDEGKNYFDEMARVY-NIKPT--MEHYGCMVDMLGR--AGLIEEAYHIIRNMP 366 (462)
Q Consensus 307 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~~~~~~A~~~~~~~~ 366 (462)
...+-++...|+...|.+.+++..... ++..+ ......|+.++-. ...+.++..-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 233335556688888888888876431 22223 3455666777653 345777777787776
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.00038 Score=56.40 Aligned_cols=96 Identities=17% Similarity=0.027 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 340 EHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
..+..+...+...|++++|...|++... .++ ...+..+...+...|++ +.|...++++.+..|.++..+..++.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH-DKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445555555566666666666655421 111 34555666666667777 77777777777766666666666666
Q ss_pred HHhhcCC--------------HHHHHHHHHHHhcCC
Q 012504 415 VSSLSGN--------------WDTAAELMVAINQKG 436 (462)
Q Consensus 415 ~~~~~g~--------------~~~A~~~~~~~~~~~ 436 (462)
++...|+ +++|.+++++..+.+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 6666555 455666666655544
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.81 E-value=8.1e-05 Score=50.41 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=53.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
-..|.+.+++ +.|..+++.+.+.+|+++..+...+.++...|++++|.+.++...+.++.
T Consensus 2 ~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDY-EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3567888999 99999999999999999999999999999999999999999998877664
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=3.3e-05 Score=42.03 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTG 298 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 298 (462)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.024 Score=50.51 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (462)
+..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++..++... +-++..|-.++.+|.+.|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33345556677788888888877778888888888888888888777665432 113466777788888888888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
+|..+...+. +..-+..|.+.|++.+|.+.--+..
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 8777766631 2445667778888887776655544
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.77 E-value=3.5e-05 Score=51.38 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=46.5
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
...|++ +.|...++++.+..|++..++..++.+|.+.|++++|.++++.+......
T Consensus 2 l~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDY-DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467888 88999999999999998888889999999999999999998887766544
No 169
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.77 E-value=0.028 Score=50.83 Aligned_cols=416 Identities=12% Similarity=0.089 Sum_probs=224.5
Q ss_pred HHHhhcChhHHHHHHHHHHHhCCCCch-----hhhhhHhhhhhc--CCHHHHHHHhccCCCCCCcccHHHHHHH--HHhC
Q 012504 9 LIQLSKTVHHLHQLHTLFLKTSLDHNT-----CIISRFILTSLS--ISLHFTRSLFNNLPVTPPLFAYNTLIRA--YAKT 79 (462)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~g~~~~~-----~~~~~ll~~~~~--~~~~~A~~~~~~~~~~~~~~~y~~li~~--~~~~ 79 (462)
.|...++..++..+|..+.+.--.... ...+.+| +.| .+++.-...+......-....|-.+..+ +-+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~gril--nAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRIL--NAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHH--HHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 355667889999999998876433211 2223333 222 1555555555444332123445555443 3467
Q ss_pred CCchhHHHHHHHHHHC--CCCC------------CcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCC----CccchHhH
Q 012504 80 SCSIESIKLFDEMLKT--GLRP------------DNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLD----SDKYIGNT 141 (462)
Q Consensus 80 g~~~~a~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 141 (462)
+.+.+|++.+..-..+ +.+| |...=+..+.++...|++.+++.+++.+...-.+ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899999988877665 3332 1122244566788899999999999888765433 67778887
Q ss_pred HHHHHHhc--------CChhHHHHHHh-------cCCCCCh----------hhHHHHHHHHHcC--CChhHHHHHHHHhH
Q 012504 142 LLRMYAAC--------KEIDVAKAVFE-------EMPVRDV----------VSWSSMIAGFVAC--DSPSDALKVFHRMK 194 (462)
Q Consensus 142 l~~~~~~~--------~~~~~A~~~~~-------~~~~~~~----------~~~~~l~~~~~~~--~~~~~a~~~~~~m~ 194 (462)
++-.+.++ ...+-+...++ ++...+. .....++....-. .+..--.++++...
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 66555543 11111112221 1111111 1111122211111 12222233333333
Q ss_pred HCCCCCCHH-HHHHHHHHHhcccchHhHHHHHHHHHHhCCCc----hHhHHHHHHHHHHhcCChHHHHHHHhhcc--CCC
Q 012504 195 LANESPNSV-TLVSLVSACTSLINVRAGESIHSYAVVNGLEL----DVALGTALVEMYSKCGHVEKAFKVFNLMR--EKN 267 (462)
Q Consensus 195 ~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~ 267 (462)
..-+.|+.. ....+...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+.-+. +|+
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 333445443 22233333333 4555555555444432211 24467777778888888888887777655 333
Q ss_pred hhh-------HHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH---hhccCc-HHHHHHHHHHHHH
Q 012504 268 LQS-------WTIMISGLAD----NGRGNYAISLFAKMIQTGLKPDSI-SFSAILSA---CSHLGL-VDEGKNYFDEMAR 331 (462)
Q Consensus 268 ~~~-------~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~---~~~~~~-~~~a~~~~~~~~~ 331 (462)
... -..+-+..+. .-+..+=+.+|+......+ |.. ....++.+ +-+.|. -+.|.++++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 221 1112222221 1123334455665555433 322 22333332 344554 7889999998875
Q ss_pred hcCCCCchhHHHHHH----HHHHhc---CCHH---HHHHHHHhCCCC----CCHHHHHHHHHH--HHHcCChHHHHHHHH
Q 012504 332 VYNIKPTMEHYGCMV----DMLGRA---GLIE---EAYHIIRNMPTE----PNAVILRSFLGA--CRNHGQVLYLDDNLG 395 (462)
Q Consensus 332 ~~~~~~~~~~~~~l~----~~~~~~---~~~~---~A~~~~~~~~~~----~~~~~~~~l~~~--~~~~~~~~~~a~~~~ 395 (462)
- -+-|...-+.+. ..|..+ ..+. +-..+.++.... .+...-+.|..+ +...|++ .++.-.-
T Consensus 409 f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey-~kc~~ys 485 (549)
T PF07079_consen 409 F--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY-HKCYLYS 485 (549)
T ss_pred h--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH-HHHHHHH
Confidence 3 122333333222 223221 1122 222333443332 234566666665 5689999 9999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 396 KLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 396 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
..+.+..| ++.+|..++.++....++++|+.++..++-
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 99999999 788999999999999999999999987654
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00037 Score=49.73 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR 351 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (462)
..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|...++..... .+.+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 344445555555555555555555432 112233444444455555555555555554431 12222344444444444
Q ss_pred cCCHHHHHHHHHh
Q 012504 352 AGLIEEAYHIIRN 364 (462)
Q Consensus 352 ~~~~~~A~~~~~~ 364 (462)
.|++++|...+..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 4555555444443
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.75 E-value=0.00053 Score=62.54 Aligned_cols=99 Identities=10% Similarity=0.018 Sum_probs=79.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
....+...|++++|+..|++++.... -+...|..+..++...|++++|...++++... -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 35667788999999999999998643 35668888888999999999999999999863 2335778889999999999
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHH
Q 012504 354 LIEEAYHIIRNMPT-EPNAVILR 375 (462)
Q Consensus 354 ~~~~A~~~~~~~~~-~~~~~~~~ 375 (462)
++++|...|++... .|+.....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999998743 35444333
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=97.73 E-value=0.00059 Score=52.93 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=63.6
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH
Q 012504 347 DMLGRAGLIEEAYHIIRNMP--TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
.-+...|++++|..+|+-+- ..-+..-|..|..++-..+++ +.|...|..+..+.++||......+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y-~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF-QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33456777777777777652 234566667777777777777 888888888777777888788888888888888888
Q ss_pred HHHHHHHHhc
Q 012504 425 AAELMVAINQ 434 (462)
Q Consensus 425 A~~~~~~~~~ 434 (462)
|+..|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8887777665
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.72 E-value=0.0055 Score=57.52 Aligned_cols=94 Identities=14% Similarity=0.063 Sum_probs=56.7
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHH---------HHHHHCCCCCCcchHHHHHHHhhhhcCchhH--HHHHHHHHHhCC
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLF---------DEMLKTGLRPDNFTYPFVVKACGRCLLIGIG--GSVHSLIFKVGL 132 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~---------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~~ 132 (462)
|....+.+-+-.|...|.+++|.++- +.+... ..+...++..=.+|.+.++..-- ..-++++.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 45556666677788888888876542 111111 12334455555666666665433 333556667776
Q ss_pred CCccchHhHHHHHHHhcCChhHHHHHHhcC
Q 012504 133 DSDKYIGNTLLRMYAACKEIDVAKAVFEEM 162 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 162 (462)
.|+... +...++-.|.+.+|-++|.+-
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 677643 556677888888888887553
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.0087 Score=52.85 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=84.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHH
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL-GLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDM 348 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~ 348 (462)
.+..|...|++..|-+.+ ..+...|... |+++.|.+.|++....+..... ..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~---------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCL---------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHH---------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 344555555555554443 3345566676 8888888888887654322222 3456677788
Q ss_pred HHhcCCHHHHHHHHHhCCC----CC----CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc-----hHHHHHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT----EP----NAV-ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA-----NYVLAAS 414 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~----~~----~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~ 414 (462)
+.+.|++++|.++|+++.. .+ +.. .+-..+-++...||. ..|...+++.....|.-.. +...|+.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~-v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY-VAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 8899999999999987622 11 122 223334466778888 8999999998888765432 3445566
Q ss_pred HHhh--cCCHHHHHHHHHHHh
Q 012504 415 VSSL--SGNWDTAAELMVAIN 433 (462)
Q Consensus 415 ~~~~--~g~~~~A~~~~~~~~ 433 (462)
++-. ...+++|+.-|+.+.
T Consensus 244 A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHhCCHHHHHHHHHHHcccC
Confidence 6643 345556665555443
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00072 Score=48.37 Aligned_cols=81 Identities=7% Similarity=-0.018 Sum_probs=66.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCCC-CCCHHHHHHHHHHHhccc--------chHhHHHHHHHHHHhCCCchHhH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLANE-SPNSVTLVSLVSACTSLI--------NVRAGESIHSYAVVNGLELDVAL 239 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 239 (462)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-....+|+.|...++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334456666777999999999999999999 899999999998876543 24456778999999999999999
Q ss_pred HHHHHHHHHh
Q 012504 240 GTALVEMYSK 249 (462)
Q Consensus 240 ~~~l~~~~~~ 249 (462)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887765
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.70 E-value=0.00019 Score=50.12 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=40.8
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHH
Q 012504 281 NGRGNYAISLFAKMIQTGLK-PDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 358 (462)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.. ...| +......+.++|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666654321 12333333556666666666666666552 1122 223333445666666666666
Q ss_pred HHHHHh
Q 012504 359 YHIIRN 364 (462)
Q Consensus 359 ~~~~~~ 364 (462)
++.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.70 E-value=0.00041 Score=63.48 Aligned_cols=118 Identities=6% Similarity=0.015 Sum_probs=82.7
Q ss_pred CCccchHhHHHHHHHhcCChhHHHHHHhcCCCC------ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHH
Q 012504 133 DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR------DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLV 206 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 206 (462)
+.+......+++.+....+++.+..++-+.... -..+..++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334445555666666666677777766666531 12355678888888888888888888878888888888888
Q ss_pred HHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 012504 207 SLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC 250 (462)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (462)
.+|+.+.+.|++..|.++..+|...+...+..++...+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888777776666666665555555544
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00016 Score=61.22 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=87.6
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVL 388 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~ 388 (462)
-..+.+++.+|+..|.+.+. +.| |...|..-..+|.+.|.++.|++-.+.... .| ....|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~- 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY- 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH-
Confidence 35678999999999999985 454 577778889999999999999998888743 33 467899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHH
Q 012504 389 YLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 389 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 423 (462)
.+|.+.|++++.++|++......|-.+-.+.+...
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999866666655555544444
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.65 E-value=0.00061 Score=55.00 Aligned_cols=93 Identities=15% Similarity=-0.041 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP----NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
...|..++..+...|++++|...|++... .| ...++..+...+...|+. +.|...++++.+..|.....+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~-~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH-TKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 55667777788888999999988887631 12 235788888899999999 9999999999999998888888888
Q ss_pred HHHh-------hcCCHHHHHHHHHHH
Q 012504 414 SVSS-------LSGNWDTAAELMVAI 432 (462)
Q Consensus 414 ~~~~-------~~g~~~~A~~~~~~~ 432 (462)
.++. +.|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 788888666555543
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.065 Score=51.62 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012504 302 DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGAC 381 (462)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 381 (462)
..-+.+--+.-+...|+..+|.++-++.. -||...|..-+.+++..++|++-+++-+..+. +..|.-++.+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHH
Confidence 33345555566677888889988777663 47778888888999999999998888877762 56677789999
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
.+.|+. ++|..++.+..... ....+|.+.|++.+|.++-
T Consensus 755 ~~~~n~-~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNK-DEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccH-HHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 999999 99988876554322 5777888999999888764
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.002 Score=52.22 Aligned_cols=89 Identities=15% Similarity=0.037 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC--HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 167 VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN--SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 33455666666667777777777777665332221 2456666666777777777777777766653 33445555566
Q ss_pred HHHHhcCChHHH
Q 012504 245 EMYSKCGHVEKA 256 (462)
Q Consensus 245 ~~~~~~~~~~~a 256 (462)
.++...|+...+
T Consensus 114 ~~~~~~g~~~~a 125 (172)
T PRK02603 114 VIYHKRGEKAEE 125 (172)
T ss_pred HHHHHcCChHhH
Confidence 666666554433
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0046 Score=59.09 Aligned_cols=66 Identities=17% Similarity=0.095 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 340 EHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
..|..+.-.....|++++|...++++.. .|+...|..+...+...|+. ++|...++++.+++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~-~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDN-RLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCc
Confidence 3444443333344555555555544422 34444444455555555555 555555555555555544
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0006 Score=57.83 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=82.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcC
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAG 353 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 353 (462)
..-+.+.+++++|+..|.+.+... +-|++-|..=..+|.+.|.++.|++-.+..+ .+.|. ...|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 455788899999999999999863 2366777777889999999999999888877 44565 788999999999999
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 012504 354 LIEEAYHIIRNMPT-EPNAVILRSFLG 379 (462)
Q Consensus 354 ~~~~A~~~~~~~~~-~~~~~~~~~l~~ 379 (462)
++++|++.|++... .|+..+|..=+.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 99999999998754 677767655443
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0027 Score=60.69 Aligned_cols=137 Identities=14% Similarity=0.060 Sum_probs=97.0
Q ss_pred CCCCCHHHHHHHHHHhhc-----cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhc--------CCHHHHHHHHH
Q 012504 298 GLKPDSISFSAILSACSH-----LGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRA--------GLIEEAYHIIR 363 (462)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~ 363 (462)
+.+.+...|...+++... .++...|..+|++..+. .|+ ...|..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345667778877776432 23467888888888753 565 44454444433221 12344455544
Q ss_pred hCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 364 NMP----TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 364 ~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
+.. ...++..+..+.-.....|++ ++|...++++.+++|. ...|..++.++...|+.++|.+.+++..+.++..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~-~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKT-DEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 421 234567787777777788999 9999999999999994 6789999999999999999999999998877653
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.054 Score=48.36 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=81.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNH 384 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 384 (462)
+.+..+.-|...|....|.++-++. .+ |+...|...+++|+..++|++-.++-.. +.++..|..++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4555566667778887777765554 43 7888899999999999999998887654 23457788899999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 385 GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
|+. .+|..+..+ - .+..-+..|.++|++.+|.+.-
T Consensus 251 ~~~-~eA~~yI~k----~-----~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNK-KEASKYIPK----I-----PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCH-HHHHHHHHh----C-----ChHHHHHHHHHCCCHHHHHHHH
Confidence 999 888888776 1 2256777888999999887664
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.019 Score=45.28 Aligned_cols=99 Identities=17% Similarity=0.085 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC-----ChhhHHH
Q 012504 199 SPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK-----NLQSWTI 273 (462)
Q Consensus 199 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 273 (462)
.|+...-..+..+....|+..+|...|.+....-+..|......+.++....+++..|...++++-+- .+.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 35555455555666666666666666666655444555555555666666666666666666555431 1223344
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 012504 274 MISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
+...|...|++.+|..-|+...+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 455555556666666666655553
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.55 E-value=0.004 Score=48.14 Aligned_cols=89 Identities=13% Similarity=0.057 Sum_probs=42.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 012504 172 SMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCG 251 (462)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (462)
.+...+...|++++|.++|+.+.... +-+..-|..|..++-..|++++|+..|....... +.++..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33334445555555555555554432 1233334444444445555555555555555544 334444444555555555
Q ss_pred ChHHHHHHHhh
Q 012504 252 HVEKAFKVFNL 262 (462)
Q Consensus 252 ~~~~a~~~~~~ 262 (462)
+.+.|.+.|+.
T Consensus 118 ~~~~A~~aF~~ 128 (157)
T PRK15363 118 NVCYAIKALKA 128 (157)
T ss_pred CHHHHHHHHHH
Confidence 55555554443
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.54 E-value=0.0016 Score=59.75 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC--CCchHhHHHHHHHHHHhcCChHHHHHHHhhccC----CChhhH
Q 012504 198 ESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG--LELDVALGTALVEMYSKCGHVEKAFKVFNLMRE----KNLQSW 271 (462)
Q Consensus 198 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 271 (462)
.+.+......+++.+....+++.+..++....... ...-..+..++++.|.+.|..+.+..+++.=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34556666666666666666666666666655441 112223334566666666666666666555433 455566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH 315 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 315 (462)
+.++..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666666555544455555555544443
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.52 E-value=0.00024 Score=46.77 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+...+.+.|++++|.+.|+++.. .| +...+..+..++...|++ +.|...++++.+..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~-~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY-DEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCCC
Confidence 45567778888888888877643 24 466777777788888888 888888888888887753
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.0011 Score=58.50 Aligned_cols=128 Identities=11% Similarity=-0.054 Sum_probs=87.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHH---HHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEM---ARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNM-------PT-EPNAV 372 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~-~~~~~ 372 (462)
.|..|...|.-.|+++.|+...+.- .+.+|-.. ....+..+..++.-.|+++.|.+.|+.. .. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666666667778888887665532 22233322 2456777888888888888888888764 11 23445
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc----C--CCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKL----E--PELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
+..+|...|.-..++ +.|+.++.+-+.+ + -.....+.+|+.+|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~-~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEV-QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566778888878888 8888888775543 1 2234678888999999999998888776544
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.50 E-value=0.023 Score=44.91 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=96.0
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHHH
Q 012504 299 LKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP---NAVIL 374 (462)
Q Consensus 299 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~---~~~~~ 374 (462)
..|+...-..|..+....|+..+|...|++...- -+.-|......+.++....+++..|...++.+.+ +| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3566666667778888888888888888888763 3455677777888888888888888888887633 11 23334
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
-.+.+.+...|.. ..|+..|+.+...-|+. ......+..+.++|+.++|..-+..+.
T Consensus 164 Ll~aR~laa~g~~-a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKY-ADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4467788888888 88888888888876653 355666777788888777766555444
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.49 E-value=0.065 Score=47.62 Aligned_cols=292 Identities=13% Similarity=0.013 Sum_probs=173.7
Q ss_pred HHHHHHHhh--hhcCchhHHHHHHHHHHhCCCCccchHhHHHHHH--HhcCChhHHHHHHhcCCCCChhh----HHHHHH
Q 012504 104 YPFVVKACG--RCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMY--AACKEIDVAKAVFEEMPVRDVVS----WSSMIA 175 (462)
Q Consensus 104 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~ 175 (462)
|..|-.++. ..|+-..|.++-.+..+. +..|......|+.+- .-.|+.+.|.+-|+.|... +.+ ...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHH
Confidence 544544433 346666666655543322 233444444444433 3469999999999998752 222 222333
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC-CCchHhH--HHHHHHHHH---h
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG-LELDVAL--GTALVEMYS---K 249 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~ 249 (462)
.-.+.|..+.|..+-+..-..- +--.......+...+..|+|+.|+++.+.-.... +.++..- -..|+.+-. -
T Consensus 163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 3456788888888877765532 2234567778888899999999999988766543 2333321 112222211 1
Q ss_pred cCChHHHHHHHhhcc--CCChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 250 CGHVEKAFKVFNLMR--EKNLQ-SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
.-+...|...-.+.. +||.. .--.-..++.+.|+..++-.+++.+-+....|+.. . +....+.|+ .+..-+
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRl 315 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHH
Confidence 123444444443333 34443 23334577889999999999999988875555432 2 222344554 344444
Q ss_pred HHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhcCC
Q 012504 327 DEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMP-TEPNAVILRSFLGAC-RNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 327 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~~~a~~~~~~~~~~~p 403 (462)
++..+...++|| ......+.++-...|++..|..--+... ..|....|..|...- ...|+- .++.+.+.+..+ .|
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDq-g~vR~wlAqav~-AP 393 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQ-GKVRQWLAQAVK-AP 393 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCch-HHHHHHHHHHhc-CC
Confidence 444444356665 5666677788888899888876665543 347777777777654 345888 888888887776 34
Q ss_pred CCC
Q 012504 404 ELG 406 (462)
Q Consensus 404 ~~~ 406 (462)
.+|
T Consensus 394 rdP 396 (531)
T COG3898 394 RDP 396 (531)
T ss_pred CCC
Confidence 444
No 193
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.49 E-value=0.0038 Score=50.32 Aligned_cols=79 Identities=10% Similarity=-0.071 Sum_probs=42.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCC--CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLANESP--NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEM 246 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (462)
.|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...... +.....+..+..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 45555556666677777777766665432121 12355556666666666666666666665542 2223334444444
Q ss_pred HH
Q 012504 247 YS 248 (462)
Q Consensus 247 ~~ 248 (462)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.48 E-value=0.055 Score=46.43 Aligned_cols=58 Identities=7% Similarity=-0.005 Sum_probs=32.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHHCCCCCCH-HHH---HHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 172 SMIAGFVACDSPSDALKVFHRMKLANESPNS-VTL---VSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
.....+...|++++|.+.|+.+...- |+. ... ..+..++.+.++++.|...+++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33444555677777777777766642 222 111 23445556666666666666666655
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.47 E-value=0.00089 Score=57.75 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=41.5
Q ss_pred HhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCC
Q 012504 350 GRAGLIEEAYHIIRNMPT-EPN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGN 421 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~ 421 (462)
.+.|++++|...|+.... .|+ +..+..+...|...|++ +.|...|+.+.+..|+++ .++..++.++...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~-~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK-DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 334555555555544421 122 12333445555555555 555555555555544432 333344555555555
Q ss_pred HHHHHHHHHHHhcCC
Q 012504 422 WDTAAELMVAINQKG 436 (462)
Q Consensus 422 ~~~A~~~~~~~~~~~ 436 (462)
+++|..+|+.+++..
T Consensus 233 ~~~A~~~~~~vi~~y 247 (263)
T PRK10803 233 TAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHHC
Confidence 555555555555443
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.47 E-value=0.0062 Score=45.33 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=50.9
Q ss_pred HHHHHcCCChhHHHHHHHHhHHCCCCCCH--HHHHHHHHHHhcccchHhHHHHHHHHHHhCCC--chHhHHHHHHHHHHh
Q 012504 174 IAGFVACDSPSDALKVFHRMKLANESPNS--VTLVSLVSACTSLINVRAGESIHSYAVVNGLE--LDVALGTALVEMYSK 249 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 249 (462)
..++-..|+.++|+.+|++....|+.... ..+..+..++...|++++|..+++........ .+......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455566666666666666666554332 23444555566666666666666665544211 011222223334455
Q ss_pred cCChHHHHHHHhhccCCChhhHHHHHH
Q 012504 250 CGHVEKAFKVFNLMREKNLQSWTIMIS 276 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~~~~~~~~~l~~ 276 (462)
.|+.++|.+.+-....++...|..-|.
T Consensus 88 ~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554443333333333333
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.45 E-value=0.0018 Score=57.01 Aligned_cols=129 Identities=9% Similarity=0.014 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM-LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGA 380 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 380 (462)
.+|..+++...+.+..+.|..+|.+..+. ...+..+|...... |...++.+.|.++|+.... ..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999999853 23344455544444 3335677779999999754 4577888999999
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
+...++. +.+..+|+++...-|.+. .+|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~-~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDI-NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-H-HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999 999999999998765544 57888999889999999999999888764
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.12 Score=49.45 Aligned_cols=131 Identities=6% Similarity=-0.085 Sum_probs=75.9
Q ss_pred CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHC-CCCCCcchHHHH-------HHHhhhhcCchhH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNFTYPFV-------VKACGRCLLIGIG 120 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l-------l~~~~~~~~~~~a 120 (462)
.+++|.++.+.- |....|..+.......-.++.|...|-+.... |++.-. -...+ ...-+-.|.+++|
T Consensus 678 gledA~qfiEdn---PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vk-rl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN---PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVK-RLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC---CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHH-HhhhhhhHHHHhHhHhhhhcchhHh
Confidence 455555555444 66778888887777777777777776554332 222100 00000 1112234788888
Q ss_pred HHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC-----ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 012504 121 GSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR-----DVVSWSSMIAGFVACDSPSDALKVFHR 192 (462)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 192 (462)
+++|-+|-+++ ..+..+.+.|++-...++++.-... -..+|+.+...+.....|++|.+.|..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887776653 3456667778887777777664322 123566666666666666666666543
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.43 E-value=0.015 Score=48.47 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=89.8
Q ss_pred HHHHHHhcCChHHHHHHHhhccC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 012504 243 LVEMYSKCGHVEKAFKVFNLMRE--KN----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH- 315 (462)
Q Consensus 243 l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 315 (462)
....+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...+++..+.-+.-....+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566777777777776653 21 134445566777777777777777777665221111122222222211
Q ss_pred ------------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 012504 316 ------------LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRN 383 (462)
Q Consensus 316 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 383 (462)
.+....|...|+.+ +.-|=...-..+|...+..+...--..- ..+..-|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELRNRLAEHE-LYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 12223333444433 4444444445555555544432111111 124667889
Q ss_pred cCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCCHHHHH
Q 012504 384 HGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 384 ~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 426 (462)
.|.+ ..|..-++.+.+.-|+.+ .....++.+|.+.|..+.|.
T Consensus 154 ~~~y-~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKY-KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-H-HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccH-HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999 999999999999888875 34667888888999887554
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.43 E-value=0.00061 Score=55.17 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=79.2
Q ss_pred HHHHHhccCC-CCCCcccHHHHHHHHHhC-----CCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhh-----------
Q 012504 52 FTRSLFNNLP-VTPPLFAYNTLIRAYAKT-----SCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRC----------- 114 (462)
Q Consensus 52 ~A~~~~~~~~-~~~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------- 114 (462)
--...|+..+ ...+-.+|..+++.|.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3445566653 237888999999988754 67777788899999999999999999999987542
Q ss_pred -----cCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCC
Q 012504 115 -----LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE 151 (462)
Q Consensus 115 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (462)
.+.+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3456688999999999999999999999998866654
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.42 E-value=0.0069 Score=45.08 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=58.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHH
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPD--SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLG 350 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (462)
...++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888887776544 23555666677778888888888887776421101 1222223344566
Q ss_pred hcCCHHHHHHHHHhC
Q 012504 351 RAGLIEEAYHIIRNM 365 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~ 365 (462)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 778888887776543
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.38 E-value=0.071 Score=48.10 Aligned_cols=163 Identities=14% Similarity=0.110 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCC-------ChhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012504 240 GTALVEMYSKCGHVEKAFKVFNLMREK-------NLQSWTIMISGLAD---NGRGNYAISLFAKMIQTGLKPDSISFSAI 309 (462)
Q Consensus 240 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 309 (462)
...++-+|....+++..+++++.+... ....-.....++.+ .|+.++|.+++..+....-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334555677788888888888877753 12222334556666 78888888888886666566777788777
Q ss_pred HHHhhc---------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC-HH---HHHHHH---Hh-CC------
Q 012504 310 LSACSH---------LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL-IE---EAYHII---RN-MP------ 366 (462)
Q Consensus 310 l~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~A~~~~---~~-~~------ 366 (462)
.+.|-. ....+.|...|.+.- .+.|+...--.++..+.-.|. ++ +..++- .. ..
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 776532 224667777777654 444553332223333333332 11 222222 11 11
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 367 TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
...+--.+.+++.++.-.|+. +.|.+..+++.++.|+.-
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~-~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDY-EKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhcCCcch
Confidence 123445566788899999999 999999999999877653
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.0028 Score=51.47 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=73.5
Q ss_pred HHHHhcC--CCCChhhHHHHHHHHHc-----CCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc-------------
Q 012504 156 KAVFEEM--PVRDVVSWSSMIAGFVA-----CDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSL------------- 215 (462)
Q Consensus 156 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------- 215 (462)
...|++. ..++..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 34566677777766654 467777777888888889999999999999886542
Q ss_pred ---cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 216 ---INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 216 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
.+-+-+.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688999999999999999999999999877654
No 204
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.31 E-value=0.00016 Score=40.02 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHH
Q 012504 395 GKLLLKLEPELGANYVLAASVSSLSGNWDTAAE 427 (462)
Q Consensus 395 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 427 (462)
++++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.30 E-value=0.00063 Score=45.37 Aligned_cols=64 Identities=20% Similarity=0.055 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCC
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHG-QVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~~p 403 (462)
...|..+...+...|++++|+..|++... +.+...|..+..++...| ++ +.|...++++.+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~-~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY-EEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHcCc
Confidence 44566666666667777777776666532 234556666666677776 56 777777777776665
No 206
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.23 E-value=0.0015 Score=43.37 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=33.2
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILR 375 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ 375 (462)
..|++++|..+|+.+... .+-+...+..+..+|.+.|++++|.++++++.. .|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456666666666666553 222455555666666666666666666666643 34433333
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.12 Score=43.51 Aligned_cols=261 Identities=11% Similarity=0.028 Sum_probs=149.7
Q ss_pred hCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHH
Q 012504 29 TSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVV 108 (462)
Q Consensus 29 ~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 108 (462)
.|+.....+..+++ ...|+. .++..|-..........|+.-+..+.+....++|..-++...+.+ .||-. |...=
T Consensus 35 ~~~~~~~~~~g~~~--~~~~~~-~~~~~~l~~~t~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p 109 (366)
T KOG2796|consen 35 RNWRAAVDLCGRLL--TAHGQG-YGKSGLLTSHTTDSLQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYP 109 (366)
T ss_pred hhhHHHHhhhHHHH--HHHhhh-hhhhheeeccchhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeecc
Confidence 45555555555555 444433 444444332221333445666777888777777776665554432 11110 00000
Q ss_pred HHh-hhhc-CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC----------ChhhHHHHHHH
Q 012504 109 KAC-GRCL-LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR----------DVVSWSSMIAG 176 (462)
Q Consensus 109 ~~~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~l~~~ 176 (462)
..+ .+.| .+.-+..++......- ...-++.|.+.+.-..-+.+-+..++.-..+ -....+.++..
T Consensus 110 ~iyp~rrGSmVPFsmR~lhAe~~~~---lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~ 186 (366)
T KOG2796|consen 110 HVYPGRRGSMVPFSMRILHAELQQY---LGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANC 186 (366)
T ss_pred ccCCCCcCccccHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 000 0111 1122222222111110 1122355555555544445544444443322 12344566777
Q ss_pred HHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC-----CCchHhHHHHHHHHHHhcC
Q 012504 177 FVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG-----LELDVALGTALVEMYSKCG 251 (462)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 251 (462)
+.-.|.+.-.+..+++.++...+.++.....+++...+.||.+.|...++...+.. +.-...+.......|.-.+
T Consensus 187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence 77788888888899998887666677788888888888999999999998777643 2333333344445667778
Q ss_pred ChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 252 HVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 252 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
++..|...+.++... +++.-|.-.-+..-.|+..+|++.++.|...
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888877753 4555565555666678889999999998876
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.31 Score=47.27 Aligned_cols=114 Identities=14% Similarity=0.052 Sum_probs=53.5
Q ss_pred CCHHHHHHHhccCCCCCC---cccHHHHHHHHHhCCCc--hhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHH
Q 012504 48 ISLHFTRSLFNNLPVTPP---LFAYNTLIRAYAKTSCS--IESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGS 122 (462)
Q Consensus 48 ~~~~~A~~~~~~~~~~~~---~~~y~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 122 (462)
+.+..|.++-..+.. |. ...|.....-+.+..+. +.+++..++=...-. -...+|..+.+.....|+++.|..
T Consensus 451 ~~Y~vaIQva~~l~~-p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~k 528 (829)
T KOG2280|consen 451 HLYSVAIQVAKLLNL-PESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARK 528 (829)
T ss_pred chhHHHHHHHHHhCC-ccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHH
Confidence 366666666666555 33 33344444444444322 122222222111111 234456666666666777777766
Q ss_pred HHHHHHHhCC----CCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 123 VHSLIFKVGL----DSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 123 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
+++.=...+. -.+..-+...+.-+...|+.+-...++-.+.
T Consensus 529 Lle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 529 LLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 6654222211 0122223444455556666666666555544
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.09 E-value=0.13 Score=42.86 Aligned_cols=58 Identities=9% Similarity=-0.041 Sum_probs=30.5
Q ss_pred HHHHHcCCChhHHHHHHHHhHHCCC--CCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 174 IAGFVACDSPSDALKVFHRMKLANE--SPNSVTLVSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
...+...|++.+|.+.|+.+...-. +--......++.++.+.|+++.|...++...+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566667777777766655311 111223344555666666666666666666554
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.09 E-value=0.0056 Score=54.35 Aligned_cols=257 Identities=13% Similarity=0.030 Sum_probs=144.2
Q ss_pred HHHHhCCCchhHHHHHHHHHHCCCCCCc----chHHHHHHHhhhhcCchhHHHHHHHHH--H--hCCC-CccchHhHHHH
Q 012504 74 RAYAKTSCSIESIKLFDEMLKTGLRPDN----FTYPFVVKACGRCLLIGIGGSVHSLIF--K--VGLD-SDKYIGNTLLR 144 (462)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~ 144 (462)
.-+++.|+....+.+|+..++.|.. |. .+|..+-++|.-.+++++|+++...=+ . .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478999999999999999998754 44 346667777888899999988765322 1 1111 01122234445
Q ss_pred HHHhcCChhHHHHHHhcCC-------CC--ChhhHHHHHHHHHcCCC--------------------hhHHHHHHHHhH-
Q 012504 145 MYAACKEIDVAKAVFEEMP-------VR--DVVSWSSMIAGFVACDS--------------------PSDALKVFHRMK- 194 (462)
Q Consensus 145 ~~~~~~~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~- 194 (462)
.+--.|.+++|.-.-.+-. .+ ...++-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 5555677777665433221 00 12234444555544432 123444443211
Q ss_pred ---HCCCC-CCHHHHHHHHHHHhcccchHhHHHHHHHHHH----hCCC-chHhHHHHHHHHHHhcCChHHHHHHHhhcc-
Q 012504 195 ---LANES-PNSVTLVSLVSACTSLINVRAGESIHSYAVV----NGLE-LDVALGTALVEMYSKCGHVEKAFKVFNLMR- 264 (462)
Q Consensus 195 ---~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 264 (462)
+.|-. ..-..|..|.+.|.-.|+++.|+...+.-+. .|-. ..-..+..+.+++.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11100 1123455555556666778877766544322 2211 123456677778888888888888776543
Q ss_pred ------CCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 265 ------EKNL--QSWTIMISGLADNGRGNYAISLFAKMIQ----TG-LKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 265 ------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
.+.+ .+.-+|...|.-..++++|+.++.+-.. .+ ..-....+..|..++...|..++|..+.....+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1222 3344566666666777777776655332 11 122345666777777777777777766655443
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.08 E-value=0.0032 Score=57.32 Aligned_cols=62 Identities=11% Similarity=-0.044 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMP-TEPNA----VILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
...++.+..+|.+.|++++|+..|++.. ..|+. ..|..+..+|...|+. ++|...++++.+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~-dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG-KKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Confidence 4555556666666666666666665532 23332 2355566666666666 6666666666654
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.00 E-value=0.0013 Score=39.10 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
.++..+...|...|++ +.|+++++++.+..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~-~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQP-DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567788889999999 99999999999999999888877764
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.98 E-value=0.0022 Score=50.37 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh-----cCCCccCCcc
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN-----QKGLNKVPGC 443 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 443 (462)
.....++..+...|++ +.+..+.+.+...+|-+...+..++.+|...|+..+|.++|+.+. +.|+.|.+.+
T Consensus 63 ~~~~~l~~~~~~~~~~-~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDY-EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-H-HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3455677778889999 999999999999999999999999999999999999999998875 3587776643
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.045 Score=45.86 Aligned_cols=136 Identities=12% Similarity=0.029 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHH-----H
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHY-----G 343 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 343 (462)
.+.+.++..+.-.|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...|+...+..+ ..+.... .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345666777777788888888899988876666777888888888889999999999997776522 2332222 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMPTE--PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
.....|.-.+++..|...+.++... .++...|.-.-+..-.|+. ..|.+..+.+.+..|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l-~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL-KDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH-HHHHHHHHHHhccCCccc
Confidence 3334456677888888888887653 2344444444445567788 888888888888877654
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.96 E-value=0.018 Score=49.79 Aligned_cols=101 Identities=11% Similarity=0.079 Sum_probs=73.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP----NAVILRSFL 378 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----~~~~~~~l~ 378 (462)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+.. .| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555444566888899888888887532111 135667788888889999999988888742 12 245555667
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
..+...|+. +.|..+++.+.+..|++.
T Consensus 225 ~~~~~~g~~-~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDT-AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHCcCCH
Confidence 778888999 999999999999888875
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.07 Score=45.90 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhCCC--CCCHHHH
Q 012504 300 KPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG---LIEEAYHIIRNMPT--EPNAVIL 374 (462)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~--~~~~~~~ 374 (462)
+-|...|..|..+|...|+++.|...|....+. ..+++..+..+.+++.... ...++.++|+++.. +.++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 336778999999999999999999999998863 3445667777776665432 36688889988743 3456677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
..|...+...|++ ..|...++.+.+..|.+. .+..++
T Consensus 231 ~lLA~~afe~g~~-~~A~~~Wq~lL~~lp~~~-~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDY-AEAAAAWQMLLDLLPADD-PRRSLI 267 (287)
T ss_pred HHHHHHHHHcccH-HHHHHHHHHHHhcCCCCC-chHHHH
Confidence 7777889999999 999999999999877765 333333
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.91 E-value=0.0034 Score=42.32 Aligned_cols=62 Identities=11% Similarity=-0.018 Sum_probs=45.9
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchH
Q 012504 347 DMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANY 409 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 409 (462)
..|.+.+++++|.++++.+.. +.++..|......+...|++ ..|...++.+.+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY-EEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH-HHHHHHHHHHHHHCCCcHHHH
Confidence 457778888888888887643 33556666677778888888 888888888888888776443
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.87 E-value=0.017 Score=43.50 Aligned_cols=53 Identities=21% Similarity=0.180 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 298 GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
...|+..+..+++.+|+..+++..|.++.+.+.+.++++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788888888888888888999999999988888888888888888876544
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.86 E-value=0.0017 Score=44.48 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKL----EPE---LGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.+++.+...|...|++ ++|+..++++.++ +++ ...++..++.+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRY-DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666777777777 7777777776643 222 13456677778888888888888777654
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.80 E-value=0.39 Score=43.74 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=51.0
Q ss_pred CCchhhhhhHh-hhhhcCCHHHHHHHhccCCCC-C-CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHH
Q 012504 32 DHNTCIISRFI-LTSLSISLHFTRSLFNNLPVT-P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVV 108 (462)
Q Consensus 32 ~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~-~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 108 (462)
+.|...|-.|+ .....+..+..+++++++..+ | =..+|..-|.+=....++.....+|.+.+.... +...|...+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 45667777777 223333788888888888663 1 123566666666667788888888888777543 455555555
Q ss_pred HHhhhh
Q 012504 109 KACGRC 114 (462)
Q Consensus 109 ~~~~~~ 114 (462)
.-..+.
T Consensus 117 ~YIRr~ 122 (660)
T COG5107 117 EYIRRV 122 (660)
T ss_pred HHHHhh
Confidence 544333
No 221
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.0077 Score=50.88 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=29.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCC---CchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPEL---GANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
|..++...|++ +.|...|..+.+..|+. |+.+.-|+.+..+.|+.++|..+|+++++.
T Consensus 184 LGe~~y~qg~y-~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDY-EDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccc-hHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45555555555 55555555555443333 234445555555555555555555555443
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.69 E-value=0.054 Score=41.25 Aligned_cols=91 Identities=12% Similarity=-0.007 Sum_probs=55.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch---HHHHHHHHh
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPTE-----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN---YVLAASVSS 417 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~ 417 (462)
.....+.|++++|.+.|+.+..+ -....--.++.+|.+.+++ +.|...+++.++++|.++.+ +...+.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y-~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY-EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 33445667777777777776432 1233444567777777777 77777777777777776543 333333333
Q ss_pred hcCC---------------HHHHHHHHHHHhcCCC
Q 012504 418 LSGN---------------WDTAAELMVAINQKGL 437 (462)
Q Consensus 418 ~~g~---------------~~~A~~~~~~~~~~~~ 437 (462)
++.. ..+|..-|+.+++.-+
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 4433 6677777777776544
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.66 E-value=0.097 Score=49.62 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=24.1
Q ss_pred HHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCC
Q 012504 24 TLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPV 62 (462)
Q Consensus 24 ~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~ 62 (462)
+++.++|-.|+........ ...|.+.+|.++|.+-+.
T Consensus 624 ~~~k~rge~P~~iLlA~~~--Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 624 EERKKRGETPNDLLLADVF--AYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HHHHhcCCCchHHHHHHHH--HhhhhHHHHHHHHHHcCc
Confidence 4455667667776666666 555677777777766554
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.15 Score=43.77 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=71.7
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCChHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRS---FLGACRNHGQVLY 389 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~ 389 (462)
....|++.+|...|+..... .+-+...-..+.++|...|+.+.|..++..++.+-...-+.. -+..+.+.... .
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~-~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT-P 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC-C
Confidence 45667777777777777653 233355566677777778888888888877765432222222 12223333332 2
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
.. .-++.-...+|+|...-..++..+...|+.++|.+.+=.+.++
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 2233344457777777777787888888888877776666544
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.027 Score=50.31 Aligned_cols=137 Identities=14% Similarity=0.017 Sum_probs=97.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
...|.+.|++..|..-|++.... +. +...-+.++..... .+ -..++..+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~~--------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-AL--------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-HH--------HHHHhhHHHHHHHhhhh
Confidence 45677777777777777766542 10 11111112222111 11 12356778889999999
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHH-HHHHHH
Q 012504 355 IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTA-AELMVA 431 (462)
Q Consensus 355 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 431 (462)
+..|++..+.... +++......=..++...|++ +.|+..|++++++.|.+-.+...++.+-.+...+.+. .++|..
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~-~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEY-DLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888643 56777777778899999999 9999999999999999988888888887776665554 778888
Q ss_pred Hhc
Q 012504 432 INQ 434 (462)
Q Consensus 432 ~~~ 434 (462)
|-.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 854
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.014 Score=52.02 Aligned_cols=68 Identities=9% Similarity=-0.034 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
..++..+.-+|.+.+++ ..|+....+++..+|++...++.-+.++...|+++.|+..|+++.+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~-~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEY-KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHhhHHHHHHHhhhhH-HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 44667788889999999 999999999999999999999999999999999999999999998876543
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.44 E-value=0.71 Score=42.25 Aligned_cols=98 Identities=6% Similarity=-0.005 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHHh-CCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCC-----------------CCcccHHHHHHHH
Q 012504 15 TVHHLHQLHTLFLKT-SLDHNTCIISRFILTSLSISLHFTRSLFNNLPVT-----------------PPLFAYNTLIRAY 76 (462)
Q Consensus 15 ~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~-----------------~~~~~y~~li~~~ 76 (462)
+++........+.+. |-.+=...+..++ +-.-+....|.+.|...... +|..-=+..+..+
T Consensus 60 nld~Me~~l~~l~~~~~~s~~l~LF~~L~-~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sL 138 (549)
T PF07079_consen 60 NLDLMEKQLMELRQQFGKSAYLPLFKALV-AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSL 138 (549)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHH
Confidence 455555555555543 3222222333333 22223777777766433211 2222224456778
Q ss_pred HhCCCchhHHHHHHHHHHCC----CCCCcchHHHHHHHhhh
Q 012504 77 AKTSCSIESIKLFDEMLKTG----LRPDNFTYPFVVKACGR 113 (462)
Q Consensus 77 ~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~ 113 (462)
...|++.++..+++++...= ...+..+|+.++-.+++
T Consensus 139 Ie~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 139 IETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 89999999999999887653 34788899886655544
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.44 E-value=0.21 Score=37.17 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=77.6
Q ss_pred HHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccch---HhHHHHHHHhcCCh
Q 012504 76 YAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYI---GNTLLRMYAACKEI 152 (462)
Q Consensus 76 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 152 (462)
+.-.|..++..++..+...+. +..-+|.+|-.....-+-+-..++++ +.|---|... ...++.+|+..|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~Ld---sIGkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLD---SIGKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHH---HHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHH---HHhhhcCchhhcchHHHHHHHHHhcch
Confidence 344677888888887776642 45556655554444433333333333 3332222221 12344444444432
Q ss_pred hHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC
Q 012504 153 DVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG 232 (462)
Q Consensus 153 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 232 (462)
.......+.....+|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 234455667777888888888888887764 36788888888888999999988888888888887
Q ss_pred CC
Q 012504 233 LE 234 (462)
Q Consensus 233 ~~ 234 (462)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 43
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.39 E-value=0.078 Score=48.71 Aligned_cols=143 Identities=8% Similarity=0.008 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHhhc---------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 012504 284 GNYAISLFAKMIQT-GLKPD-SISFSAILSACSH---------LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA 352 (462)
Q Consensus 284 ~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (462)
.+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.+.-+...+. -+.|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 34566666666622 23444 2344444443321 11233444444444431 123355555555555556
Q ss_pred CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch--HHHHHHHHhhcCCHHHHHHH
Q 012504 353 GLIEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN--YVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 353 ~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~ 428 (462)
++++.|...|++... .| ...+|......+.-.|+. ++|.+.++++.++.|..... ....+..|... ..++|+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~-~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKI-EEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 666666666666532 23 244444444455566666 66666666666666655422 22222234333 34555555
Q ss_pred HH
Q 012504 429 MV 430 (462)
Q Consensus 429 ~~ 430 (462)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 43
No 230
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.36 E-value=1 Score=43.63 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHH------
Q 012504 132 LDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTL------ 205 (462)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------ 205 (462)
++.+....-.+.+++.+.|.-++|.+.|-+...|- ..+..|...++|.+|.++-++..- |...|.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aa 918 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAA 918 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHH
Confidence 45566677778888888888888888887766552 233455556666666666544321 111111
Q ss_pred --------HHHHHHHhcccchHhHHHHHHHHHH
Q 012504 206 --------VSLVSACTSLINVRAGESIHSYAVV 230 (462)
Q Consensus 206 --------~~l~~~~~~~~~~~~a~~~~~~~~~ 230 (462)
...|....+.|..-.|.+++.+|.+
T Consensus 919 qll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1123445677776666666666654
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.33 E-value=0.15 Score=47.79 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=99.5
Q ss_pred HHHhCCCchhHHHHHHH--HHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 75 AYAKTSCSIESIKLFDE--MLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 75 ~~~~~g~~~~a~~~~~~--m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
...-+|+++++.++.+. +.. .+ .....+.+++-+.+.|..+.|+++..+ + ..-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence 34457788887766641 111 12 244577778888888888888876443 2 2345667788999
Q ss_pred hHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC
Q 012504 153 DVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG 232 (462)
Q Consensus 153 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 232 (462)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+... +..|+-.|...|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998888776 566899999999999999999999887653 5566666777788887777777777665
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012504 233 LELDVALGTALVEMYSKCGHVEKAFKVFNLM 263 (462)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 263 (462)
. ++....++.-.|+.+++.+++.+.
T Consensus 404 -~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 333344455557777777666543
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.31 E-value=0.0086 Score=40.93 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--------EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+|+.+...|...|++++|+..|++... .|+ ..++..+..++...|++ +.|..+++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~-~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY-EEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHh
Confidence 344444555555555555544444310 111 33445555555555555 555555555543
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.24 E-value=0.39 Score=45.80 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHhhc----cCcHHHHHHHHHHHHHhcCCCCch
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQT-GLKPDS-----ISFSAILSACSH----LGLVDEGKNYFDEMARVYNIKPTM 339 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 339 (462)
....++....-.|+-+.+++.+.+..+. ++.-.. -.|..++..++. ..+.+.|.++++.+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 3444555566667777777777766553 222111 123333333332 45678899999999864 4665
Q ss_pred hHHH-HHHHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHH
Q 012504 340 EHYG-CMVDMLGRAGLIEEAYHIIRNMPT-E-----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLA 412 (462)
Q Consensus 340 ~~~~-~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 412 (462)
..|. .-.+.+...|+.++|++.|++... + .....+.-+...+....++ ++|...+..+.+...-+...|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w-~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW-EEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH-HHHHHHHHHHHhccccHHHHHHHH
Confidence 4444 335667788999999999997643 1 2334555667778889999 999999999998777666555544
Q ss_pred -HHHHhhcCCH-------HHHHHHHHHHhc
Q 012504 413 -ASVSSLSGNW-------DTAAELMVAINQ 434 (462)
Q Consensus 413 -~~~~~~~g~~-------~~A~~~~~~~~~ 434 (462)
+.++...|+. ++|.++++++..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4556678888 889999988764
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=96.13 E-value=0.21 Score=39.16 Aligned_cols=84 Identities=8% Similarity=-0.020 Sum_probs=35.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 280 DNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 280 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
..|++++|..+|+-+.-.+.. +..-+..|..++-..+++++|...|...... . .-|+..+-....+|...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHH
Confidence 445555555555444433211 2222333333344444555555555444321 1 122222333444455555555555
Q ss_pred HHHHhCC
Q 012504 360 HIIRNMP 366 (462)
Q Consensus 360 ~~~~~~~ 366 (462)
..|+...
T Consensus 126 ~~f~~a~ 132 (165)
T PRK15331 126 QCFELVN 132 (165)
T ss_pred HHHHHHH
Confidence 5554443
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.07 E-value=0.18 Score=42.85 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=73.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC-CHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EP-NAVILRS 376 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~ 376 (462)
.|+.-+..+ +.|++..|...|....+. .+-+ ...+-.|.+++...|++++|..+|..+.. .| -+..+-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 566666544 557788888888888874 2222 44566688888888888888888877632 22 3467777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
|..+..+.|+. +.|...++++.+.-|+.+.+
T Consensus 221 lg~~~~~l~~~-d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNT-DEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCH-HHHHHHHHHHHHHCCCCHHH
Confidence 77888888888 99999999998888887644
No 236
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.05 E-value=1.8 Score=43.08 Aligned_cols=74 Identities=12% Similarity=-0.035 Sum_probs=43.9
Q ss_pred HHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 142 LLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 142 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
-+..+.+.++++....++..- ..+...-.....+....|+.++|......+-..| ...+..+..++..+.+.|.
T Consensus 105 ~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 344455677777777733232 3455555666677777788777776666665544 2345556666666654443
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.92 E-value=0.094 Score=41.04 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHH-----hCCCchHhH
Q 012504 171 SSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVV-----NGLELDVAL 239 (462)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 239 (462)
..++..+...|++++|..+.+.+.... +.|...+..+|.++...|+...|.+.|+.+.. .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444455555555555555555432 23445555555555555555555555554432 355555443
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.86 E-value=1.4 Score=40.14 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=40.9
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCCC-------ChhhHHHHHHHHHc---CCChhHHHHHHHHhHHCCCCCCHHHHHHHHH
Q 012504 141 TLLRMYAACKEIDVAKAVFEEMPVR-------DVVSWSSMIAGFVA---CDSPSDALKVFHRMKLANESPNSVTLVSLVS 210 (462)
Q Consensus 141 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 210 (462)
.++-.|-...+++..+++++.+... ....-....-++-+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566667777777777776643 11122223334444 6777777777777555445566666666655
Q ss_pred HH
Q 012504 211 AC 212 (462)
Q Consensus 211 ~~ 212 (462)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 239
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.83 E-value=0.8 Score=37.53 Aligned_cols=161 Identities=10% Similarity=0.007 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++..|.+-+...-+...-.|-...|.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3466666666677777777777777776653222222222222 233456777766655555443122222223322221
Q ss_pred HHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHhhc
Q 012504 348 MLGRAGLIEEAYHII-RNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL-------GANYVLAASVSSLS 419 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 419 (462)
..-++.+|..-+ ++.. ..+...|...+..+.- |+. ..+.+++++.+...++ ..+|..|+.-+...
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gki--S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKI--SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhc--cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 223455555433 3332 2344444433333221 222 1133444444433332 24677777778888
Q ss_pred CCHHHHHHHHHHHhcCC
Q 012504 420 GNWDTAAELMVAINQKG 436 (462)
Q Consensus 420 g~~~~A~~~~~~~~~~~ 436 (462)
|+.++|..+|+-.+..+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 88888888877665443
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.83 E-value=0.052 Score=45.97 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=76.6
Q ss_pred HHHHHHhccCC-CCCCcccHHHHHHHHHhC-----CCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhc---------
Q 012504 51 HFTRSLFNNLP-VTPPLFAYNTLIRAYAKT-----SCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCL--------- 115 (462)
Q Consensus 51 ~~A~~~~~~~~-~~~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--------- 115 (462)
--.+..|+..+ ...|-.+|-..+..|... +.++=....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34455666665 237888888888888654 566777788999999999999999999998875532
Q ss_pred -------CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCC
Q 012504 116 -------LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE 151 (462)
Q Consensus 116 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (462)
+-+-+..++++|..+|+.||..+-..|++++.+.+-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 334467888888888888888888888888877654
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.81 E-value=0.33 Score=42.91 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=19.9
Q ss_pred cCCChhHHHHHHHHhHHC--CCCCCHHHHHHHHHHHhcccchHhH
Q 012504 179 ACDSPSDALKVFHRMKLA--NESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
...+.++|+..+.+-..+ +...--.++..+..+.+..|.++++
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 455666666666554432 0111112444445555555555444
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.96 Score=37.84 Aligned_cols=54 Identities=4% Similarity=-0.072 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhc----CCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKL----EPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
+...|-.+.-..++ ..|+..++...+. .|++..+...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dy-v~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDY-VQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHH-HHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33334444455556 6666666654432 345555555666555 455555555444
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.93 Score=37.92 Aligned_cols=91 Identities=10% Similarity=0.025 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC--CCchhHHHH
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQT----GLKPDS-ISFSAILSACSHLGLVDEGKNYFDEMARVYNI--KPTMEHYGC 344 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ 344 (462)
......+.+..++++|-..+.+-... .-.|+. ..|...|-.+....++..|.+.++.-.+-.++ +.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 33445555556665555444332211 011222 23444445556666777777777664322122 223455666
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 012504 345 MVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~ 363 (462)
|+.+| ..|+.+++.+++.
T Consensus 234 LL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHh-ccCCHHHHHHHHc
Confidence 66665 3466666555543
No 244
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.70 E-value=1.1 Score=37.90 Aligned_cols=57 Identities=14% Similarity=-0.014 Sum_probs=40.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCch---HHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGAN---YVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+.+-|.+.|.+ ..|..-++.+++.-|+.+.+ +..+..+|...|..++|...-+-+..
T Consensus 173 IaryY~kr~~~-~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAY-VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcCh-HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 45567888888 88888888888776666544 44556677888888888776554443
No 245
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.69 E-value=3.7 Score=45.87 Aligned_cols=315 Identities=12% Similarity=0.050 Sum_probs=174.5
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhCC--CCccchHhHHHHHHHhcCChhHHHHHHhc-CCCCChhhHHHHHHHHHcCCC
Q 012504 106 FVVKACGRCLLIGIGGSVHSLIFKVGL--DSDKYIGNTLLRMYAACKEIDVAKAVFEE-MPVRDVVSWSSMIAGFVACDS 182 (462)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 182 (462)
.+..+-.+++.+.+|...++.-..... ......+-.+...|+.-+++|....+... ...++ .+. .|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~~-qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--LYQ-QILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HHH-HHHHHHhhcc
Confidence 344455677888888888887411111 11122344455588999999988888774 33333 222 3334566899
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHH-HHHHHhcCChHHHHHHHh
Q 012504 183 PSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTAL-VEMYSKCGHVEKAFKVFN 261 (462)
Q Consensus 183 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~ 261 (462)
++.|...|+.+.+.+ ++...+++-++......|.+..+....+-..... .+....++.+ +.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998864 3446677777777777777777666544444332 3333333333 455577888888777766
Q ss_pred hccCCChhhHHHH--HHHHHHcCC--hHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHhhccCcHHHHHHHHHH
Q 012504 262 LMREKNLQSWTIM--ISGLADNGR--GNYAISLFAKMIQTGLKP--------D-SISFSAILSACSHLGLVDEGKNYFDE 328 (462)
Q Consensus 262 ~~~~~~~~~~~~l--~~~~~~~~~--~~~a~~~~~~m~~~~~~p--------~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 328 (462)
..+..+|... +..+.+... .-.-.+..+.+++.-+.| + ...|..++....- -+-....+.
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l----~el~~~~~~ 1615 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL----LELENSIEE 1615 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4455555444 233333222 111222333333321111 0 0123333222111 111111111
Q ss_pred HHHhcCCCCch------hHHHHHH---HHHHhcCCHHHHH-HHHHh--CC---CCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012504 329 MARVYNIKPTM------EHYGCMV---DMLGRAGLIEEAY-HIIRN--MP---TEPNAVILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 329 ~~~~~~~~~~~------~~~~~l~---~~~~~~~~~~~A~-~~~~~--~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
+ .+..++. .-|..-+ +.+.+..++--|. +.+.. |. ...-..+|-...+.....|.+ +.|..
T Consensus 1616 l---~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~-q~A~n 1691 (2382)
T KOG0890|consen 1616 L---KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL-QRAQN 1691 (2382)
T ss_pred h---hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH-HHHHH
Confidence 1 1222221 1222222 2222222221121 11111 11 113356888888899999999 99888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 394 LGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+-.+.+..+ +.++...+.-+...|+...|+.++++-.+.+..
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 8877777663 458889999999999999999999998866543
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.50 E-value=0.73 Score=34.45 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=84.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34567778888888777654 244556666655555555556666666664432222 2333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 358 AYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 358 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
....+-.+. .+.......+......|+. +.-..++..+.+.+..+|.....++.+|.+.|+..++-+++++.-++|+
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kk-DqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKK-DQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-H-HHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccH-HHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333333332 2344455567778888988 8888888888766666778899999999999999999999999998887
Q ss_pred c
Q 012504 438 N 438 (462)
Q Consensus 438 ~ 438 (462)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 247
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.39 E-value=2.2 Score=39.22 Aligned_cols=369 Identities=11% Similarity=0.027 Sum_probs=200.0
Q ss_pred HHhccCCCC-CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCC
Q 012504 55 SLFNNLPVT-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLD 133 (462)
Q Consensus 55 ~~~~~~~~~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 133 (462)
++-+++... .|..+|-.||.-+...|..++..+++++|..- .+.-...|..-|++=...+++...+.+|.+.+...+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 566666654 46888999999999999999999999999753 2334556777777766678999999999999887555
Q ss_pred CccchHhHHHHHHHhcCC---------hhHHHHHHhcCC--C-CChhhHHHHHHH---HHcCCCh------hHHHHHHHH
Q 012504 134 SDKYIGNTLLRMYAACKE---------IDVAKAVFEEMP--V-RDVVSWSSMIAG---FVACDSP------SDALKVFHR 192 (462)
Q Consensus 134 ~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~--~-~~~~~~~~l~~~---~~~~~~~------~~a~~~~~~ 192 (462)
...|...++---+.+. +-+|.++.-... + .+...|+..+.- .-..|.| +...+.|.+
T Consensus 109 --ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 109 --LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred --HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 4445555543333221 122222221111 2 244455554443 2233444 456667777
Q ss_pred hHHCCCCC------CHHHHHHHHHHHh-------cccchHhHHHHHHHHHHh--C-------------------------
Q 012504 193 MKLANESP------NSVTLVSLVSACT-------SLINVRAGESIHSYAVVN--G------------------------- 232 (462)
Q Consensus 193 m~~~~~~p------~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~--~------------------------- 232 (462)
|....+.- |-..|..=++-.. ..--+..|.+.++++... |
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 76532110 0001111111000 000112223333322210 1
Q ss_pred ---------C----------------------CchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh------------
Q 012504 233 ---------L----------------------ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ------------ 269 (462)
Q Consensus 233 ---------~----------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------ 269 (462)
+ .-...+|--.-.-+...++-+.|...........+.
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~ 346 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELV 346 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhc
Confidence 0 001111111111122344555566555543321111
Q ss_pred --------hHHHHHHHHHH---c----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 012504 270 --------SWTIMISGLAD---N----------GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDE 328 (462)
Q Consensus 270 --------~~~~l~~~~~~---~----------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 328 (462)
+|..+++.+.+ . |+++.-.+++-+-+ .-=...|...+..-.+...++.|..+|-+
T Consensus 347 nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 347 NDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred ccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 12222222211 0 11111111111100 01123455566666677788899999999
Q ss_pred HHHhcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 329 MARVYN-IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM-PTEPNAVIL-RSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 329 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
..+. + +.+++.++++++..++ .|+..-|..+|+.- ..-||...| ...+.-+...++- ..|..+|+.....-.++
T Consensus 423 ~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde-~naraLFetsv~r~~~~ 499 (660)
T COG5107 423 LRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDE-ENARALFETSVERLEKT 499 (660)
T ss_pred Hhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcH-HHHHHHHHHhHHHHHHh
Confidence 9876 5 6778888888887665 57888899998874 434666555 3455566778888 88999999665422222
Q ss_pred --CchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 406 --GANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 406 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
..+|..++.--..-|+...+..+=+.|.
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 3477788877777888877766555553
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.33 E-value=0.93 Score=34.69 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 012504 389 YLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 389 ~~a~~~~~~~~~~~p~~~ 406 (462)
..|...|+.+++.-|++.
T Consensus 116 ~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 116 RQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHCcCCh
Confidence 567777788888888764
No 249
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.32 E-value=0.31 Score=36.71 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh-CCCchHhHHHHHHHH
Q 012504 198 ESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN-GLELDVALGTALVEM 246 (462)
Q Consensus 198 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 246 (462)
..|+..+..+++.+++..|++..|.++.+...+. +++.+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4566666666666666666666666666665543 444455566555543
No 250
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.27 E-value=0.22 Score=42.42 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=82.3
Q ss_pred HHHHHHhcCC--CCChhhHHHHHHHHHc-----CCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc----------
Q 012504 154 VAKAVFEEMP--VRDVVSWSSMIAGFVA-----CDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI---------- 216 (462)
Q Consensus 154 ~A~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---------- 216 (462)
..++.|.... ++|..+|...+..+.. .+.++-....++.|++-|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455566665 5577777777776643 3566777777888999999999999999998875432
Q ss_pred ------chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCh-HHHHHHHhhcc
Q 012504 217 ------NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHV-EKAFKVFNLMR 264 (462)
Q Consensus 217 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 264 (462)
+-+-+..++++|...|+-||..+-..|++++.+.+.. .+..++.-.|.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3355789999999999999999999999999887763 33444444443
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.18 E-value=0.87 Score=42.87 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=84.2
Q ss_pred HHHcCCChhHHHHHHH--HhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCh
Q 012504 176 GFVACDSPSDALKVFH--RMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHV 253 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 253 (462)
...-.++++.+.++.. ++.. .+ | ..-...++..+.+.|-.+.|.++... +. .-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3344566666665554 1111 11 1 33355566666666777666665322 11 123445677777
Q ss_pred HHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc
Q 012504 254 EKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVY 333 (462)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 333 (462)
+.|.++.++.. +...|..|.......|+++-|.+.|.+..+ +..|+-.|...|+.+.-.++.+.....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 77777765544 455777777777777887777777766442 344444556666666666665555442
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 334 NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
| -++....++.-.|+.++..+++.+..
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 24444455556677777777777665
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=1.9 Score=37.34 Aligned_cols=146 Identities=13% Similarity=0.071 Sum_probs=74.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCH
Q 012504 276 SGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLI 355 (462)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (462)
......|++.+|...|+........ +...-..+..+|...|+.+.|..++..+... --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3445566777777777666654222 2344455566667777777777777665432 1011111111223333444333
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCCCchHHHHHHHHhhcCCHHH
Q 012504 356 EEAYHIIRNMPTEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKL--EPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
.+...+-.+....| |...-..+...+...|+. +.|...+-.+.+. +-.+..+-..++..+...|.-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~-e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRN-EAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 33333333333333 455555566667777777 5555554444432 33444566666666666554443
No 253
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.10 E-value=2.4 Score=38.84 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 369 PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP----ELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
....+|..+...+.+.|.+ +.|...+.++.+..+ ..+.+...-+..+...|+..+|+..++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~-~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNF-QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCc-HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788889999999999 999999999887542 24567777888889999999999999888773
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.08 E-value=1.2 Score=34.45 Aligned_cols=126 Identities=8% Similarity=0.010 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
...++..+...+.+.....+++.+...+. .+....+.++..|++.+ .......++. .++.......++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 34455566666666777777776666552 45556666666666542 2333333331 112222334555666
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 012504 351 RAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNH-GQVLYLDDNLGKLLLKLEPELGANYVLAASVSS 417 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 417 (462)
+.+.++++.-++.++.. +...+..+... ++. +.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~-~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNY-EKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCH-HHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 66666677776666652 11122333333 566 666666553 234445555555443
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.98 E-value=0.047 Score=32.27 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=29.8
Q ss_pred CchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 406 GANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
|.++..++.+|.+.|++++|+++|++..+..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3578899999999999999999999999877643
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.96 E-value=0.091 Score=28.74 Aligned_cols=31 Identities=16% Similarity=0.012 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
.|..+...+...|++ ++|+..++++.++.|+
T Consensus 3 ~~~~lg~~~~~~~~~-~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNY-EEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-H-HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHHHCcC
Confidence 344455556666666 6666666666665554
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=4.5 Score=40.33 Aligned_cols=175 Identities=14% Similarity=0.050 Sum_probs=112.9
Q ss_pred HhHHHHHHHhcCChhHHHHHHhcCCCCCh---hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc
Q 012504 139 GNTLLRMYAACKEIDVAKAVFEEMPVRDV---VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSL 215 (462)
Q Consensus 139 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 215 (462)
...-++...+...++-|+.+-+.-..+.. ........-+.+.|++++|...|-+-... +.|.. ++.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCH
Confidence 34556666777777777777666543321 12333344566788999998888765443 23322 34445566
Q ss_pred cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh--hHHHHHHHHHHcCChHHHHHHHHH
Q 012504 216 INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ--SWTIMISGLADNGRGNYAISLFAK 293 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 293 (462)
.....-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+... .+.. -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 667777778888888884 455566778999999999998888888776 3332 245566777777777777766554
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 294 MIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 294 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
... +......++ ...+++++|.++++.+
T Consensus 489 ~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 332 334444444 4667888888888766
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=1 Score=39.47 Aligned_cols=155 Identities=11% Similarity=0.010 Sum_probs=88.8
Q ss_pred HhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHH--HHHHhhccCcHH
Q 012504 248 SKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI--SFSA--ILSACSHLGLVD 320 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~--ll~~~~~~~~~~ 320 (462)
...|+..+|...++++.+ .|..++.--=.++...|+.+.-...+++.... ..|+.. +|.. ..-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 344666666666666654 35566666667777777777777777777654 233332 2322 223344667777
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCChHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPN------AVILRSFLGACRNHGQVLYLDDNL 394 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~a~~~ 394 (462)
+|++.-++..+- -+.|.-.-.+....+.-.|++.++.++..+-...-+ ...|....-.+...+.+ +.|+.+
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey-e~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY-EKALEI 269 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch-hHHHHH
Confidence 787777766532 122344445566666677778888777776643211 11222222334455667 777777
Q ss_pred HHHHH--hcCCCCC
Q 012504 395 GKLLL--KLEPELG 406 (462)
Q Consensus 395 ~~~~~--~~~p~~~ 406 (462)
|+.-. +++.+|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 76633 4555555
No 259
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.89 E-value=0.43 Score=44.01 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=54.7
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH----HHHHHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNS----VTLVSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999998874 4654 35888999999999999999999998875
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.84 E-value=2.1 Score=36.05 Aligned_cols=199 Identities=16% Similarity=0.082 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHh-CCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC--Ch-hhHHHHHH-H
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVN-GLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK--NL-QSWTIMIS-G 277 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~-~ 277 (462)
..+......+...+++..+...+...... ........+......+...+++..+.+.+...... +. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444455555555555555555554432 22333444444455555555555555555554431 11 11222222 4
Q ss_pred HHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCC
Q 012504 278 LADNGRGNYAISLFAKMIQTGL--KPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 354 (462)
+...|+++.+...+.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 5555555555555555533111 011122222222233445555555555555432 122 23444444445555555
Q ss_pred HHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 355 IEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 355 ~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
++.|...+..... .|+ ...+..+...+...+.. +.+...+.+..+..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRY-EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCH-HHHHHHHHHHHHhCcc
Confidence 5555555544422 122 22333333333333444 5555555555554443
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.75 E-value=3.9 Score=39.17 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHHCC-CCCCH-----HHHHHHHHHHhc----ccchHhHHHHHHHHHHhCCCchHhH
Q 012504 170 WSSMIAGFVACDSPSDALKVFHRMKLAN-ESPNS-----VTLVSLVSACTS----LINVRAGESIHSYAVVNGLELDVAL 239 (462)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 239 (462)
...+++...-.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ..+.+.+.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3344455555677777777777654432 21111 123333333332 34566777777777765 345444
Q ss_pred HH-HHHHHHHhcCChHHHHHHHhhccCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 240 GT-ALVEMYSKCGHVEKAFKVFNLMREK-------NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 240 ~~-~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
|. .-.+.+...|++++|++.|++.... ....+--+.-.+....++++|.+.|..+.+.+ ..+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 43 2355666777778887777765431 11233344455666677777777777777652 223334433333
Q ss_pred H-hhccCcH-------HHHHHHHHHHH
Q 012504 312 A-CSHLGLV-------DEGKNYFDEMA 330 (462)
Q Consensus 312 ~-~~~~~~~-------~~a~~~~~~~~ 330 (462)
+ +...++. ++|..+|.++.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 2 2334555 66666666654
No 262
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.58 E-value=3.1 Score=36.88 Aligned_cols=68 Identities=9% Similarity=-0.033 Sum_probs=39.2
Q ss_pred hHHHHHHHHhHHCCCCCCHH--HHHHHHHHHhcccc--hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 012504 184 SDALKVFHRMKLANESPNSV--TLVSLVSACTSLIN--VRAGESIHSYAVVNGLELDVALGTALVEMYSKCG 251 (462)
Q Consensus 184 ~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (462)
+.+..+|+.+...|+..+.. ..+.++..+....+ ...+..+++.+.+.|+++....|..++-...-.+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCC
Confidence 45667777777766655332 33333333322222 3467778888888888877777766654443333
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.57 E-value=1.6 Score=33.65 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHH
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRM 145 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (462)
......++..+...+.+......++.+...|. .+...++.++..+++.+ ..+....+.. ..+......+++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 33455667777767777777777777776653 46666777777776543 2222233321 1222333445556
Q ss_pred HHhcCChhHHHHHHhcCC
Q 012504 146 YAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 146 ~~~~~~~~~A~~~~~~~~ 163 (462)
|.+.+-++++.-++.++.
T Consensus 79 c~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 79 CEKAKLYEEAVELYKKDG 96 (140)
T ss_pred HHHcCcHHHHHHHHHhhc
Confidence 666666666665555543
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.55 E-value=3.7 Score=37.62 Aligned_cols=148 Identities=12% Similarity=-0.005 Sum_probs=78.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhH
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP---DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT--MEH 341 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 341 (462)
...+|..+++.+.+.|+++.|...+.++...+..+ .+.....-.......|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44678888888889999999998888887643211 2223333344456678888888888877762 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 342 YGCMVDMLGRAGLIEEAYHII-RNMPTEPNAVILRSFLGACRNH------GQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
...+...+.. ..+.....- .......-...+..+..-+... +.. +.+...|..+.+..|.....+..++.
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESS-DEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccH-HHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 1111111100 000000000 0000000112222233323333 667 88888889999888888888888777
Q ss_pred HHhh
Q 012504 415 VSSL 418 (462)
Q Consensus 415 ~~~~ 418 (462)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 7654
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.53 E-value=0.38 Score=35.78 Aligned_cols=103 Identities=13% Similarity=-0.007 Sum_probs=66.1
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC-H---HHHHHHHHHHHHcC
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPN-A---VILRSFLGACRNHG 385 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~---~~~~~l~~~~~~~~ 385 (462)
+....|+++.|++.|.+... -.+.....||.-.+++.-.|+.++|++-+++... .+. . ..|..=...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45677888888888887764 3344577888888888888888888877776532 111 1 12222233466778
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSS 417 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 417 (462)
+. +.|..-|+.+.+++..-..-....++-|.
T Consensus 130 ~d-d~AR~DFe~AA~LGS~FAr~QLV~lNPYA 160 (175)
T KOG4555|consen 130 ND-DAARADFEAAAQLGSKFAREQLVELNPYA 160 (175)
T ss_pred ch-HHHHHhHHHHHHhCCHHHHHHHHhcChHH
Confidence 88 88888888888776554433333444443
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.49 E-value=1.1 Score=39.60 Aligned_cols=138 Identities=7% Similarity=0.090 Sum_probs=88.7
Q ss_pred HHHHHHHhhcC-h----hHHHHHHHHHHHhCCCCchhhhhhHh-hhhh-c-----CCHHHHHHHhccCCCC------CCc
Q 012504 5 HIETLIQLSKT-V----HHLHQLHTLFLKTSLDHNTCIISRFI-LTSL-S-----ISLHFTRSLFNNLPVT------PPL 66 (462)
Q Consensus 5 ~~~~~l~~~~~-~----~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~-~-----~~~~~A~~~~~~~~~~------~~~ 66 (462)
.++++|...+. + +....+++.|.+.|++.+..++-+.. +... . .....|..+++.|... ++-
T Consensus 62 ~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 62 ILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 45666666665 4 55588999999999999887776644 2221 0 1677888889888643 555
Q ss_pred ccHHHHHHHHHhCCCc----hhHHHHHHHHHHCCCCCCcc--hHHHHHHHhhhhcC--chhHHHHHHHHHHhCCCCccch
Q 012504 67 FAYNTLIRAYAKTSCS----IESIKLFDEMLKTGLRPDNF--TYPFVVKACGRCLL--IGIGGSVHSLIFKVGLDSDKYI 138 (462)
Q Consensus 67 ~~y~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 138 (462)
..+..++.. ..+++ +.+..+|+.+.+.|+..+.. ....++..+..... ..++..+++.+.+.|+++....
T Consensus 142 ~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 142 YPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred hhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 566666655 33333 45667888888878765543 33333333322222 4577888888888888877776
Q ss_pred HhHHHH
Q 012504 139 GNTLLR 144 (462)
Q Consensus 139 ~~~l~~ 144 (462)
|..+.-
T Consensus 220 yp~lGl 225 (297)
T PF13170_consen 220 YPTLGL 225 (297)
T ss_pred ccHHHH
Confidence 665443
No 267
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.47 E-value=0.099 Score=28.67 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
+|..+...+...|++ +.|...++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDY-EEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-H-HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCc-hHHHHHHHHHHHHCcC
Confidence 444555555555555 5555555555555554
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.5 Score=41.35 Aligned_cols=159 Identities=13% Similarity=0.028 Sum_probs=116.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHH----HHHHHHHhcCC
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYG----CMVDMLGRAGL 354 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~ 354 (462)
--.|++.+|...++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4568888999999999886 455677777777889999999999999998876 3355543333 33344568999
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC----CchHHHHHHHHhhcCCHHHHHHH
Q 012504 355 IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL----GANYVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 355 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~ 428 (462)
+++|++.-++... +.|.-.-.++...+--.|+. +++.++..+-...-... ...|-..+-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~-Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH-KEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh-hhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999988743 44556667777888889999 99988887766543322 23466778888899999999999
Q ss_pred HHHHhcCCCccCC
Q 012504 429 MVAINQKGLNKVP 441 (462)
Q Consensus 429 ~~~~~~~~~~~~~ 441 (462)
|+.-+-+....+.
T Consensus 270 yD~ei~k~l~k~D 282 (491)
T KOG2610|consen 270 YDREIWKRLEKDD 282 (491)
T ss_pred HHHHHHHHhhccc
Confidence 9866544444433
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.33 E-value=4.2 Score=38.08 Aligned_cols=58 Identities=9% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.+..++.+.|+.++|.+.++++.+.+....+..+...|+.++...+++.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444455666666666666666654222223445556666666666666666666554
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.17 E-value=3.2 Score=35.29 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=112.7
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMREKN------LQSWTIMISGLADNGRGNYAISLFAKMIQTG-LKPDSISFS 307 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~ 307 (462)
|-...|+. +..-.+.|++++|.+.|+.+.... ..+.-.++.++.+.+++++|+..+++..... -.||. -|.
T Consensus 33 p~~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 33 PASELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 44455554 444567899999999999998532 2456667788899999999999999998763 33443 343
Q ss_pred HHHHHhhc-------cCc---HHHHHHHHHHHHHhcC---CCCchhHH------------HHHHHHHHhcCCHHHHHHHH
Q 012504 308 AILSACSH-------LGL---VDEGKNYFDEMARVYN---IKPTMEHY------------GCMVDMLGRAGLIEEAYHII 362 (462)
Q Consensus 308 ~ll~~~~~-------~~~---~~~a~~~~~~~~~~~~---~~~~~~~~------------~~l~~~~~~~~~~~~A~~~~ 362 (462)
..|.+.+. ..+ ...|..-|+.++.++. ..||...- ..+.+-|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 34443332 123 3456666667766431 11222111 23456788999999998888
Q ss_pred HhCCCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 363 RNMPTE-----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 363 ~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++|.+. -....+-.+..+|...|-. ++|...-.-+....|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~-~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLT-DEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCCCc
Confidence 888542 2234566678899999999 999888776666666665
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.10 E-value=0.28 Score=42.39 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
++..++..+...|+++.+.+.+++... +-+...|..++.+|.+.|+. ..|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~-~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQ-SAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCc-hHHHHHHHHHHH
Confidence 445555555555555555555555422 23445555555555555555 555555555544
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.08 E-value=3.1 Score=34.92 Aligned_cols=196 Identities=17% Similarity=0.137 Sum_probs=114.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE-----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
...+......+...+.+..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 44555566666666777766666665432 2334555556666666667777777777665433321 11222222
Q ss_pred -HhhccCcHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-C-CHHHHHHHHHHHHHcC
Q 012504 312 -ACSHLGLVDEGKNYFDEMARVYNI--KPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-E-P-NAVILRSFLGACRNHG 385 (462)
Q Consensus 312 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~-~~~~~~~l~~~~~~~~ 385 (462)
.+...|+++.+...+.+.... .. ......+......+...++.+.+...+..... . . ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 566677777777777776431 11 11233344444445666777777777766533 2 2 2455666666677777
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
+. ..+...+.......|.....+..+...+...|.++++...+....+.
T Consensus 217 ~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KY-EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cH-HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77 77777777777777664445555555555556677777766665543
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.04 E-value=2.6 Score=39.44 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMPT-EP---NAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
.+..+..+.|+.++|++.++++.+ .| ...+...|+.++...+.+ .++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y-ad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY-ADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH-HHHHHHHHHhcc
Confidence 344555556666666666666532 12 223445566666666666 666666655443
No 274
>PRK11906 transcriptional regulator; Provisional
Probab=93.94 E-value=4.9 Score=37.46 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=85.5
Q ss_pred hHHHHHHHhhcc---CCC---hhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 012504 253 VEKAFKVFNLMR---EKN---LQSWTIMISGLADN---------GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG 317 (462)
Q Consensus 253 ~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 317 (462)
.+.|..+|.+.. +-+ ...|..+..++... ....+|.++-++..+.+ +-|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 567788888877 434 34455544443321 23345666777777664 336777777777677777
Q ss_pred cHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHHcCChHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNM-PTEPNA---VILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~~~~a~ 392 (462)
+++.|...|++.. .+.|| ...|........-+|+.++|.+.+++. .-.|.. .+....+..|..++ . +.+.
T Consensus 353 ~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~-~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-L-KNNI 427 (458)
T ss_pred chhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-h-hhhH
Confidence 8999999998887 45666 555555555666788999999988884 434442 22222333454443 4 5556
Q ss_pred HHHHH
Q 012504 393 NLGKL 397 (462)
Q Consensus 393 ~~~~~ 397 (462)
.++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 65543
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.94 E-value=0.12 Score=28.91 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=21.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 408 NYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.76 E-value=2.3 Score=34.43 Aligned_cols=95 Identities=8% Similarity=0.053 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCch------hH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS--ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTM------EH 341 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 341 (462)
.+..+...|++.|+.+.|.+.|.++.+....|.. ..+-.+++.....+++..+.....+.........+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666666666666666666666665433332 244555566666666666666666654431111111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
|..+ .+...+++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2334677888777776653
No 277
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=3.4 Score=34.49 Aligned_cols=24 Identities=4% Similarity=-0.126 Sum_probs=17.4
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
...+++ ..|+.+|+++.+..-+++
T Consensus 165 a~leqY-~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQY-SKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHH-HHHHHHHHHHHHHhccch
Confidence 466777 888888888877655554
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=8.3 Score=38.59 Aligned_cols=133 Identities=9% Similarity=0.051 Sum_probs=76.8
Q ss_pred CHHHHHHHhcc-CCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHH
Q 012504 49 SLHFTRSLFNN-LPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLI 127 (462)
Q Consensus 49 ~~~~A~~~~~~-~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (462)
++++|...+-+ ++.. -=..+|.-|........--..++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..
T Consensus 383 df~~A~~qYI~tI~~l----e~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 383 DFDEATDQYIETIGFL----EPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred CHHHHHHHHHHHcccC----ChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 67777665533 3221 1123556666666666677777777777765 5555667777788877777766655433
Q ss_pred HHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHh
Q 012504 128 FKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRM 193 (462)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 193 (462)
- .|.. ..-....+..+-+.+-.++|.-+-.+... +......++. ..+++++|++.+..+
T Consensus 458 ~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 458 D-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred C-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 2 1110 11134455566666666666655555443 3334444433 467788888888776
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.56 E-value=11 Score=39.43 Aligned_cols=53 Identities=17% Similarity=0.038 Sum_probs=23.4
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
+.+|...|++.+|..+..++.. .-+ ..+-..|+.-+...+++-+|-+++.+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3444445555555554444421 111 1112344444555555555555555543
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.53 E-value=0.67 Score=36.21 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=54.5
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHH
Q 012504 340 EHYGCMVDML---GRAGLIEEAYHIIRNMPT-EP---NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLA 412 (462)
Q Consensus 340 ~~~~~l~~~~---~~~~~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 412 (462)
.+...|+..+ .+.++.+++..++..+.. +| ...++... .+...|++ .+|.++++.+.+..|..+..-..+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w-~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDW-DDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCH-HHHHHHHHHHhccCCCChHHHHHH
Confidence 3444454443 467788888888887733 33 34444433 47788899 999999999888888777666666
Q ss_pred HHHHhhcCCHH
Q 012504 413 ASVSSLSGNWD 423 (462)
Q Consensus 413 ~~~~~~~g~~~ 423 (462)
+.++...|+.+
T Consensus 85 A~CL~~~~D~~ 95 (160)
T PF09613_consen 85 ALCLYALGDPS 95 (160)
T ss_pred HHHHHHcCChH
Confidence 76776666543
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.53 E-value=7.3 Score=37.34 Aligned_cols=82 Identities=10% Similarity=-0.000 Sum_probs=36.9
Q ss_pred hhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHH-hcCChhHHHHHHhcCCC------CChhhHHHHHHHHHcCCChhH
Q 012504 113 RCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYA-ACKEIDVAKAVFEEMPV------RDVVSWSSMIAGFVACDSPSD 185 (462)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~ 185 (462)
+.|..+.+.++|+..+.. ++.+...|...+..+. ..|+.+...+.|+.... .+...|...|.--..++++..
T Consensus 91 klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 344455555555554433 2333333333333222 23444444444444431 133345555554455555566
Q ss_pred HHHHHHHhHH
Q 012504 186 ALKVFHRMKL 195 (462)
Q Consensus 186 a~~~~~~m~~ 195 (462)
...+|++.++
T Consensus 170 v~~iyeRile 179 (577)
T KOG1258|consen 170 VANIYERILE 179 (577)
T ss_pred HHHHHHHHHh
Confidence 6666655554
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.47 E-value=1.7 Score=34.29 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=23.5
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 349 LGRAGLIEEAYHIIRNMPTEPN---AVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+...|.+++...-.+.+..+.+ ...-..|.-+-.+.|++ ..|...|+.+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~-a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF-AKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch-HHHHHHHHHHHc
Confidence 3445555555555554432211 12223344444555555 555555555544
No 283
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.44 E-value=0.32 Score=39.17 Aligned_cols=103 Identities=15% Similarity=0.011 Sum_probs=66.0
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCC
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQ 386 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~ 386 (462)
-+...|++++|..-|...+......+. ...|..-.-++.+.+.++.|++-...... .|. ......-..+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 456789999999999888864222221 23344445567788888888877766542 221 1222222346777778
Q ss_pred hHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 387 VLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 387 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
+ +.|..-+.++++..|.........++.
T Consensus 184 ~-eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 184 Y-EEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred H-HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 8 889999999999888766555444443
No 284
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.39 E-value=0.76 Score=35.27 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=40.1
Q ss_pred hcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCH
Q 012504 351 RAGLIEEAYHIIRNMPT----EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNW 422 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 422 (462)
..++++++..+++.+.. .+...++...+ +...|++ .+|.++++.+.+..+..+-.-..++.++...|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w-~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNY-DEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCH-HHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 46667777777766632 23344443333 5667777 7777777777766655554444555555555553
No 285
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.29 E-value=0.85 Score=34.00 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=60.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhc
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGCMVDMLGRA 352 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 352 (462)
.-++...|+.+.|++.|.+.... .+-....|+.-..++.-+|+.++|..-+++..+..|-... -..|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34567778888888888887765 2335667888888888888888888888777765333211 12233334456667
Q ss_pred CCHHHHHHHHHhC
Q 012504 353 GLIEEAYHIIRNM 365 (462)
Q Consensus 353 ~~~~~A~~~~~~~ 365 (462)
|+-+.|..-|+..
T Consensus 129 g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 129 GNDDAARADFEAA 141 (175)
T ss_pred CchHHHHHhHHHH
Confidence 7777777777665
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.13 E-value=5.8 Score=35.00 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhcc
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
.-++++.+.++.+.+.+.+.+|.
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHH
Confidence 33444444555555555555554
No 287
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.97 E-value=0.22 Score=38.75 Aligned_cols=128 Identities=11% Similarity=0.086 Sum_probs=68.7
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCC
Q 012504 72 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE 151 (462)
Q Consensus 72 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (462)
++..+.+.+.+......++.+...+..-+....+.++..|++.++.++...+++ ..+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 456666667777777777777765545556666777777777766666666555 1122333455666666666
Q ss_pred hhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 152 IDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 152 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
+++|.-++.++...+.. +..+...++++.|.++..+ .++...|..++..|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 66666665554421110 0012223344444422221 2456777777777766554
No 288
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.88 E-value=9.2 Score=36.70 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=117.9
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN---LQSWTIMISGLADNGRGNYAISLFAKMIQTGLK--PDSISFSA 308 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ 308 (462)
+++..+|...+..-.+.|+.+.+.-+|++..-|- ...|-..+.-....|+.+-|..++....+--++ |....+.+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 3456788888888888999999999998887552 345555555555568888888777666554322 22223333
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHH---HHHHhCCC-CCCHHH----HHHHHH
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAY---HIIRNMPT-EPNAVI----LRSFLG 379 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~-~~~~~~----~~~l~~ 379 (462)
.+ +...|+++.|..+++.+..+ . |+ ...-..-+....+.|..+.+. +++..... +-+..+ +....+
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFAR 448 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHH
Confidence 22 44568999999999999874 3 55 233333344556778888777 55544422 112222 222222
Q ss_pred -HHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 012504 380 -ACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG 420 (462)
Q Consensus 380 -~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 420 (462)
.+.-.++. +.|..++.++.+..|++-..|..++......+
T Consensus 449 ~~~~i~~d~-~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDA-DLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCH-HHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 24456777 89999999999999998888888887776554
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.77 E-value=2.1 Score=33.83 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=22.5
Q ss_pred HhcCChHHHHHHHhhccCC-Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 248 SKCGHVEKAFKVFNLMREK-NL---QSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
...|-+++...-.+-+..+ ++ ..-..|.-+-.+.|++.+|.++|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445555555444444322 11 2233344444455555555555555544
No 290
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.74 E-value=0.13 Score=28.05 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=26.0
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
..+..++.++...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3678899999999999999999999876554
No 291
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.56 E-value=3.2 Score=37.02 Aligned_cols=219 Identities=14% Similarity=0.116 Sum_probs=122.0
Q ss_pred HhcCChhHHHHHHhcCCCC------ChhhHHHHHHHHHcCCChhHHHHHHHHhHHC--CCCCCH---HHHHHHHHHHhcc
Q 012504 147 AACKEIDVAKAVFEEMPVR------DVVSWSSMIAGFVACDSPSDALKVFHRMKLA--NESPNS---VTLVSLVSACTSL 215 (462)
Q Consensus 147 ~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~---~~~~~l~~~~~~~ 215 (462)
....+.++|+..+.....+ --.++..+..+....|.+++++..--.-... ...... ..|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777766655433 1224555556666777776665442221110 011111 2344444444444
Q ss_pred cchHhHHHHHHHHHHh-CCCc---hHhHHHHHHHHHHhcCChHHHHHHHhhccC-----C----ChhhHHHHHHHHHHcC
Q 012504 216 INVRAGESIHSYAVVN-GLEL---DVALGTALVEMYSKCGHVEKAFKVFNLMRE-----K----NLQSWTIMISGLADNG 282 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~ 282 (462)
.++.+++.+-..-... |..+ .......+..++...+.++++++.|+...+ . ...++-.|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555544433322 2122 123445577778888888888888887653 1 2357788888888888
Q ss_pred ChHHHHHHHHHHHHC----CCCCCHHHHHH-----HHHHhhccCcHHHHHHHHHHHHHhc---CCCCc-hhHHHHHHHHH
Q 012504 283 RGNYAISLFAKMIQT----GLKPDSISFSA-----ILSACSHLGLVDEGKNYFDEMARVY---NIKPT-MEHYGCMVDML 349 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~----~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~ 349 (462)
++++|.-+..+..+. ++.--...|.. +.-++...|.+..|.+.-++..+.- |-.+. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 888888777666542 22211112322 3335566777777777776665431 22221 33445677778
Q ss_pred HhcCCHHHHHHHHHhC
Q 012504 350 GRAGLIEEAYHIIRNM 365 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~ 365 (462)
...|+.+.|..-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 8888888888777664
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.53 E-value=4.2 Score=31.90 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=59.4
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHY-GCMVDMLGRAGLIEEAYHIIRNMPTE-PNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
-...++.+++..++..+. -+.|..... ..-...+...|+|.+|..+|+++... |....-..|+..|....+- ..
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D-~~ 95 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD-PS 95 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC-hH
Confidence 346678888888888886 345553222 22234567788888888888888653 4444445555555443333 23
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHH
Q 012504 391 DDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAE 427 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 427 (462)
=..+-+++.+..++ +.+ ..++..+....+...|..
T Consensus 96 Wr~~A~evle~~~d-~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGAD-PDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCCC-hHH-HHHHHHHHHhccccchhh
Confidence 34444445554443 322 334444444444444443
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.45 E-value=4.6 Score=32.72 Aligned_cols=131 Identities=10% Similarity=0.023 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSA--ILSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGC 344 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 344 (462)
..|..++.... .+.+ +......++...+....-..+.. +...+...+++++|+..++..... ....+ ...--.
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lR 131 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHH
Confidence 34555555443 3333 44455555555421211112222 223456667777777777766532 11111 111223
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPTEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
|.+.....|.+++|+..++....+. .......-...+...|+. ++|+..|+++++..+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k-~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK-QEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch-HHHHHHHHHHHHccC
Confidence 4455666777777777777665331 122222334566777777 777777777776653
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.38 E-value=0.16 Score=27.80 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=26.4
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.+|..++.+|...|++++|+..+++..+.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999999887654
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.22 E-value=4.9 Score=31.95 Aligned_cols=135 Identities=11% Similarity=-0.017 Sum_probs=69.7
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012504 187 LKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK 266 (462)
Q Consensus 187 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 266 (462)
.++++.+.+.+++|+...+..+++.+.+.|++.. +.++...++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455556667777888888888888877777554 334444454444443333322222 1222233332233222
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
=...+..++..+...|++-+|.++.+..... +......++.+....+|...-..+++-...
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2224455566777778777777776654222 111223455555555555554444444433
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.17 E-value=0.41 Score=26.69 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKM 294 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m 294 (462)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666653
No 297
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.88 E-value=0.4 Score=26.10 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
|..+...|...|+. +.|...|+++.++.|
T Consensus 4 ~~~lg~~y~~~~~~-~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDY-EEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 33444445555555 555555555554444
No 298
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.82 E-value=1.6 Score=37.86 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=52.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQ-----TGLKPDSISFSA 308 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 308 (462)
..++..++..+...|+++.+.+.++++... +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566777777778888888777777653 446778888888888888888877777654 366666665555
Q ss_pred HHHH
Q 012504 309 ILSA 312 (462)
Q Consensus 309 ll~~ 312 (462)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.81 E-value=0.18 Score=27.21 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 409 YVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
+..++.++.+.|++++|.++|+++++..
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4456666666666677766666665543
No 300
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.68 E-value=0.27 Score=25.04 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=19.5
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHH
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMV 430 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~ 430 (462)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888889999999988875
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.61 E-value=20 Score=37.66 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCcHH
Q 012504 243 LVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI--SFSAILSACSHLGLVD 320 (462)
Q Consensus 243 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~ 320 (462)
..+.+...+.+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++... -+.. +-..|..-+...++.-
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 33334455556666555554332 122356666777777777766655321 1221 1145566677788888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
+|-++..+.... ....+..|++...|++|..+.....
T Consensus 1017 eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 888888777642 2334556778888999988887765
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.59 E-value=1.6 Score=30.58 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 283 RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44566677777777788899999999999999999999999999988754332 4445655554
No 303
>PRK09687 putative lyase; Provisional
Probab=91.25 E-value=9.9 Score=33.51 Aligned_cols=17 Identities=0% Similarity=-0.310 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHhhccCc
Q 012504 302 DSISFSAILSACSHLGL 318 (462)
Q Consensus 302 ~~~~~~~ll~~~~~~~~ 318 (462)
+...-...+.++.+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33333334444444444
No 304
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.04 E-value=7.9 Score=32.03 Aligned_cols=179 Identities=14% Similarity=0.025 Sum_probs=99.3
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh-hHHHH--HHHHHHcCChHHHHHHH
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ-SWTIM--ISGLADNGRGNYAISLF 291 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~a~~~~ 291 (462)
.|-+.-|.-=|.+..... |.-+.+||.+.--+...|+++.|.+.|+...+-|+. -|..+ .-++--.|++.-|.+-|
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 344444444444444433 334678888888889999999999999988875542 23222 22334568888888877
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHH-HHHHHHhcCCHHHHHHHHHhCCCC-
Q 012504 292 AKMIQTGLK-PDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGC-MVDMLGRAGLIEEAYHIIRNMPTE- 368 (462)
Q Consensus 292 ~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~- 368 (462)
...-..... |=...|.-+. ...-++.+|..-+.+--+ +. +..-|.. ++..|.-.=..+.+.+-...-...
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~--~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE--KS--DKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH--hc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 777665322 2122232222 233456666554433222 22 3233332 223332221222222222222111
Q ss_pred -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 012504 369 -----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 369 -----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
.-..+|--|..-+...|+. +.|..+|+-+...+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~-~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDL-DEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHh
Confidence 1235777788889999999 99999999888754
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.94 E-value=3.1 Score=33.68 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=31.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH--HHHHHHHHHHhcccchHhHHHHHHHHH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLANESPNS--VTLVSLVSACTSLINVRAGESIHSYAV 229 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~ 229 (462)
.+..+...|.+.|+.+.|++.|.++......+.. ..+..+++.+.-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445555555666666666666665554332222 234445555555555555555554443
No 306
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.94 E-value=4.7 Score=37.42 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=62.1
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
..|+.-.|.+-+....+.+.-.|+... .....+...|+++.+...+..... .....+..++++.....|++ +.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~-~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW-REAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH-HHHH
Confidence 345555554444444442233333222 222334556666666666655432 12345555666666666666 6666
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 393 NLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
...+.++..+-.++.+....+-.-...|-++++...|+.+...+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 66666666555555444443333444566666666666665444
No 307
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.66 E-value=11 Score=32.90 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=29.4
Q ss_pred CCccchHhHHHHHHHhcCChhHHHHHHhcCCC-----CChhhHHHHHHHHHcCCChhHHHHHH
Q 012504 133 DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV-----RDVVSWSSMIAGFVACDSPSDALKVF 190 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~ 190 (462)
.++..+...++..+++.+++.+-.++++.... .|...|..+|..-...|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444445555555555555555555544431 24455555555555555554444443
No 308
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.63 E-value=1.5 Score=31.14 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 285 NYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
-+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+. ....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 356666677777778899999999999999999999999999998875443 33367666543
No 309
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.60 E-value=20 Score=35.93 Aligned_cols=333 Identities=10% Similarity=-0.048 Sum_probs=161.0
Q ss_pred CHHHHHHHhccCCCCCCcccHHH-HHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNT-LIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLI 127 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (462)
..++...++++.+..|-...... -+..+.+.+++...+..+.. .+.+...-.....+....|+.++|....+.+
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777777787776554444332 34455667777766663311 2234444456667777778877676665555
Q ss_pred HHhCCCCccchHhHHHHHHHhcCChhH------------------HHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHH
Q 012504 128 FKVGLDSDKYIGNTLLRMYAACKEIDV------------------AKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKV 189 (462)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 189 (462)
-..| ...+..++.++..+.+.|.+.. |..+...+..........++..+ .+...+...
T Consensus 156 W~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~ 231 (644)
T PRK11619 156 WLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETF 231 (644)
T ss_pred hccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHH
Confidence 5444 3345566777777776555433 22222222111011111111111 111222111
Q ss_pred HHHhHHCCCCCCHHHHHHHHHHHh--cccchHhHHHHHHHHHHhC-CCch--HhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012504 190 FHRMKLANESPNSVTLVSLVSACT--SLINVRAGESIHSYAVVNG-LELD--VALGTALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 190 ~~~m~~~~~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
+.. ++|+...-..++-++. ...+.+.|...+....... +.+. ..+...+.......+...++...++...
T Consensus 232 ~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~ 306 (644)
T PRK11619 232 ART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI 306 (644)
T ss_pred hhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 111 1222211111111211 3345577777777664433 2222 1223333333333322556666666544
Q ss_pred CC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc---------
Q 012504 265 EK--NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVY--------- 333 (462)
Q Consensus 265 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------- 333 (462)
.. +.....--+..-...++++.+...+..|.... .-...-.--+.+++...|+.++|..+|+.+....
T Consensus 307 ~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~ 385 (644)
T PRK11619 307 MRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQ 385 (644)
T ss_pred cccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 32 33334444445557777877777777765432 2233344455666666788888888777764321
Q ss_pred --CCCCc------hhH--------HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012504 334 --NIKPT------MEH--------YGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKL 397 (462)
Q Consensus 334 --~~~~~------~~~--------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 397 (462)
|.+++ ... -..-+..+...|+...|...+..+....+......+.......|.. +.+......
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~-~~ai~~~~~ 464 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWW-DLSVQATIA 464 (644)
T ss_pred HcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCH-HHHHHHHhh
Confidence 11100 000 0112334455666666666665554344444444455555566666 666555543
No 310
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.17 E-value=8.9 Score=31.17 Aligned_cols=89 Identities=7% Similarity=-0.062 Sum_probs=44.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPTEPNAVILRS-----FLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG 420 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 420 (462)
...+..+|++++|...++.....|....+.. |.+.....|.+ +.|...++......-. +.....-++++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~-D~AL~~L~t~~~~~w~-~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA-DAALKTLDTIKEESWA-AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH-HHHHHHHhccccccHH-HHHHHHhhhHHHHcC
Confidence 3445566666666666665443332222222 33445556666 6665555443332111 112334456666666
Q ss_pred CHHHHHHHHHHHhcCC
Q 012504 421 NWDTAAELMVAINQKG 436 (462)
Q Consensus 421 ~~~~A~~~~~~~~~~~ 436 (462)
+.++|+.-|+...+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 6666666666665554
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=6.3 Score=34.56 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=74.2
Q ss_pred hCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC-C-----hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH
Q 012504 130 VGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR-D-----VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV 203 (462)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 203 (462)
.|.+....+...++..-....+++.++..+-++... + ..+-.+.++.+. .-++++++.++..=.+.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 344555556666666666678888888888777632 1 112223334333 346779999998889999999999
Q ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHhC
Q 012504 204 TLVSLVSACTSLINVRAGESIHSYAVVNG 232 (462)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 232 (462)
++..+|+.+.+.++...|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998887777654
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.10 E-value=1 Score=39.66 Aligned_cols=90 Identities=11% Similarity=-0.030 Sum_probs=37.0
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLY 389 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 389 (462)
|.++|.+++|+..|..... ..| |+.++..-..+|.+..++..|..-...... +.-...|..-+.+-...|+. .
T Consensus 107 yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~-~ 182 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN-M 182 (536)
T ss_pred hhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH-H
Confidence 3444444444444444432 222 344444444444444444444433333211 00111222222223334444 5
Q ss_pred HHHHHHHHHHhcCCCCC
Q 012504 390 LDDNLGKLLLKLEPELG 406 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~ 406 (462)
+|..-++.++++.|.+.
T Consensus 183 EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHhHHHHHhhCcccH
Confidence 55555555555555543
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.97 E-value=0.28 Score=38.16 Aligned_cols=86 Identities=8% Similarity=0.002 Sum_probs=64.3
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhH
Q 012504 106 FVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSD 185 (462)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (462)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777888889999999999999877666788889999999999888988888884433 333456666777777777
Q ss_pred HHHHHHHhH
Q 012504 186 ALKVFHRMK 194 (462)
Q Consensus 186 a~~~~~~m~ 194 (462)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776653
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.95 E-value=0.62 Score=25.59 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=14.6
Q ss_pred CchHhHHHHHHHHHHhcCChHHHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAF 257 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~ 257 (462)
|-+...|+.+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445566666666666666666654
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.81 E-value=22 Score=35.08 Aligned_cols=274 Identities=9% Similarity=0.018 Sum_probs=156.9
Q ss_pred hhHHHHHHhcCCCC-ChhhHHHHHH----H-HHcCCChhHHHHHHHHhHH-------CCCCCCHHHHHHHHHHHhccc--
Q 012504 152 IDVAKAVFEEMPVR-DVVSWSSMIA----G-FVACDSPSDALKVFHRMKL-------ANESPNSVTLVSLVSACTSLI-- 216 (462)
Q Consensus 152 ~~~A~~~~~~~~~~-~~~~~~~l~~----~-~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 216 (462)
...|.+.++..... +...-..+.. + +....+.+.|+.+|+.... .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45567777666543 3333322222 2 4466789999999998866 44 2334445556665533
Q ss_pred ---chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh-cCChHHHHHHHhhccCCC-hhhHHHHHHHHH----HcCChHHH
Q 012504 217 ---NVRAGESIHSYAVVNGLELDVALGTALVEMYSK-CGHVEKAFKVFNLMREKN-LQSWTIMISGLA----DNGRGNYA 287 (462)
Q Consensus 217 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~a 287 (462)
+.+.|..++....+.| .|+.......+..... ..+...|.++|....+.+ +.++-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677888998888887 4554444333322222 246788999998887643 333333333332 23477889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH---Hh----cCCHHHHHH
Q 012504 288 ISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDML---GR----AGLIEEAYH 360 (462)
Q Consensus 288 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~~~A~~ 360 (462)
..++++..+.| .|....-...+..+.. +..+.+.-.+..+... +.......-..++... .. ..+...+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999999987 4443322333333444 6666666666655443 3322211111111111 11 225566677
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc---CCHHHHHHHHHHHh
Q 012504 361 IIRNMPTEPNAVILRSFLGACRNH----GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS---GNWDTAAELMVAIN 433 (462)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 433 (462)
.+.....+.+......+...|... .+. +.+...+..+.... ......++.++..- ..+..|.++++...
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~-~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDP-EKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCCh-HHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 777765555666665555554433 235 67777777766655 55677777777542 22688888888776
Q ss_pred cCC
Q 012504 434 QKG 436 (462)
Q Consensus 434 ~~~ 436 (462)
+.+
T Consensus 537 ~~~ 539 (552)
T KOG1550|consen 537 EED 539 (552)
T ss_pred hcC
Confidence 644
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.69 E-value=8 Score=29.91 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=32.5
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMPTE 368 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 368 (462)
..++.+++..+++.+. .+.|+ ..++. ...+...|+|++|.++|+++...
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 4677788888888776 34454 33333 33466788888888888887654
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.65 E-value=0.67 Score=25.16 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.1
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.+|..++.+|...|++++|.+.|++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 368889999999999999999999887643
No 318
>PRK12798 chemotaxis protein; Reviewed
Probab=89.59 E-value=17 Score=33.53 Aligned_cols=182 Identities=17% Similarity=0.160 Sum_probs=107.5
Q ss_pred cCChHHHHHHHhhccCC----ChhhHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhccCcHH
Q 012504 250 CGHVEKAFKVFNLMREK----NLQSWTIMISG-LADNGRGNYAISLFAKMIQTGLKPD----SISFSAILSACSHLGLVD 320 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~~----~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~ 320 (462)
.|+..++.+.+..+... .+..|-.|+.+ .....++.+|+++|+..+-. -|. ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 47777777777776532 33455555554 34456778888888877653 232 223333344556778888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHH-HHHHHH---hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGC-MVDMLG---RAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 396 (462)
++..+-....++|...|-..-|.. +...+. ..-..+.-..++..|...-....|-.+.+.-.-.|+. +.|...-+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~-~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKT-ELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcH-HHHHHHHH
Confidence 887777777766555554333322 222333 3334556666777776443456777777788888888 88888888
Q ss_pred HHHhcCCCCCchHHHHHHHH-----hhcCCHHHHHHHHHHHhcC
Q 012504 397 LLLKLEPELGANYVLAASVS-----SLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 397 ~~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~ 435 (462)
++..+...+. .-...+..| .-..++++|.+.+..+...
T Consensus 282 ~A~~L~~~~~-~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 282 RALKLADPDS-ADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 8887653322 222233333 2345677777666655443
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.17 E-value=11 Score=36.31 Aligned_cols=148 Identities=21% Similarity=0.126 Sum_probs=79.1
Q ss_pred hcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHH
Q 012504 249 KCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
-.|+++.|..++..+.++ ..+.++..+.+.|-.++|+++ .+|+. -|. ...+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe----lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFE----LALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhh----hhhhcCcHHHHHHHHH
Confidence 346666666655555432 233444555556655555543 22322 122 2235677777766655
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 328 EMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+. +....+-....+.+..+.
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------~~~LlLl~t~~g~~-~~l~~la~~~~~~g~~N~- 726 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRARD------LGSLLLLYTSSGNA-EGLAVLASLAKKQGKNNL- 726 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc------hhhhhhhhhhcCCh-hHHHHHHHHHHhhcccch-
Confidence 442 344577777777777777777777766541 33445555555655 444444444444444332
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 408 NYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
...+|...|+++++.+++.+
T Consensus 727 ----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 ----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHHHcCCHHHHHHHHHh
Confidence 22244456666666666543
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.07 E-value=0.75 Score=26.37 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=22.4
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3577889999999999999999987753
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.69 E-value=1.1 Score=23.98 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
-.+..++...|+. +.|...++++.+..|++
T Consensus 4 ~~~a~~~~~~g~~-~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDY-DEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHH-HHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCH-HHHHHHHHHHHHHCcCC
Confidence 3456677778888 88888888888877763
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.58 E-value=0.92 Score=26.66 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=23.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 410 VLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988654
No 323
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.50 E-value=13 Score=29.63 Aligned_cols=43 Identities=2% Similarity=-0.046 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 121 GSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
.++++.+.+.+++|+...+..+++.+.+.|++.....+++--.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 3455556666777777777777777777777666555554443
No 324
>PRK10941 hypothetical protein; Provisional
Probab=87.38 E-value=3.6 Score=35.77 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
+.+-.+|.+.+++ +.|.++.+.+..+.|+++.-+.-.+.+|.+.|.+..|..=++..++.-
T Consensus 185 ~nLK~~~~~~~~~-~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 185 DTLKAALMEEKQM-ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHcCcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3444555666666 666666666666666666555556666666666666666555555443
No 325
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.14 E-value=20 Score=31.55 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=12.4
Q ss_pred HcCCChhHHHHHHHHhHH
Q 012504 178 VACDSPSDALKVFHRMKL 195 (462)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~ 195 (462)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356777777777777654
No 326
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.95 E-value=2.2 Score=29.94 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 393 NLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
..++...+.+|+|......++..+...|++++|++.+-.+++..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33444445566666666666666666666666666655555443
No 327
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.81 E-value=1.5 Score=38.67 Aligned_cols=89 Identities=15% Similarity=-0.012 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHH
Q 012504 346 VDMLGRAGLIEEAYHIIRNMP-TEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 423 (462)
...|.+.|.+++|+..|.... ..| ++.++..-..+|.+...+ ..|+.-...+..++.....+|..-+.+-...|+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F-A~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF-AQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH-HHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 356889999999999998753 345 777777778889999999 99999888888887766777887777777788888
Q ss_pred HHHHHHHHHhcC
Q 012504 424 TAAELMVAINQK 435 (462)
Q Consensus 424 ~A~~~~~~~~~~ 435 (462)
+|.+=++...+.
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 887777665544
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.42 E-value=6.1 Score=27.84 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=30.0
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHH
Q 012504 185 DALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAV 229 (462)
Q Consensus 185 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 229 (462)
++.+-++.+....+.|++......+++|.+.+|+..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555556666777777777777777777777777776655
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.78 E-value=17 Score=35.13 Aligned_cols=99 Identities=11% Similarity=-0.078 Sum_probs=58.5
Q ss_pred hcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHH
Q 012504 46 LSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125 (462)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 125 (462)
..|+++.|.++..+. .+..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+....+-.
T Consensus 649 ~lgrl~iA~~la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA---NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hcCcHHHHHHHHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 445666666655444 3556677777777777777777777766543 3445555555666655555555
Q ss_pred HHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcC
Q 012504 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEM 162 (462)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 162 (462)
...+.|.. |...-+|...|+++++.+++.+-
T Consensus 717 ~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 55554422 33444555666666666666444
No 330
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.45 E-value=42 Score=33.58 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhh
Q 012504 65 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRC 114 (462)
Q Consensus 65 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 114 (462)
+...--.+|--+.++|++++|.++....... .......+...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4555667888889999999999999665543 455667788888888765
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.29 E-value=25 Score=30.74 Aligned_cols=60 Identities=15% Similarity=0.021 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
++......|...|.+ .+|.++.++++..+|-+...+..|...+...|+--.|.+-++.+.
T Consensus 281 llgkva~~yle~g~~-neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKP-NEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455678999999 999999999999999999999999999999999888888887765
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.90 E-value=45 Score=33.46 Aligned_cols=139 Identities=9% Similarity=-0.029 Sum_probs=78.3
Q ss_pred CHHHHHHHhccCCCCCC----cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVH 124 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 124 (462)
.+++|+++.+..+..+. ...+...|..+.-.|++++|-...-.|... +..-|...+..++..++......++
T Consensus 371 ~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~~l 446 (846)
T KOG2066|consen 371 KYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAPYL 446 (846)
T ss_pred HHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhccC
Confidence 67778877776654422 345677788888888888888888777653 4555555555555555443322211
Q ss_pred HHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC--------------------CCChhhHHHHHHHHHcCCChh
Q 012504 125 SLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP--------------------VRDVVSWSSMIAGFVACDSPS 184 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~ 184 (462)
-......++..|..++..+.. .+...=.+...+-+ ..+...-..|+..|...+++.
T Consensus 447 ---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~ 522 (846)
T KOG2066|consen 447 ---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYE 522 (846)
T ss_pred ---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChH
Confidence 011112344556666655555 22222222221111 012233445778888888888
Q ss_pred HHHHHHHHhHH
Q 012504 185 DALKVFHRMKL 195 (462)
Q Consensus 185 ~a~~~~~~m~~ 195 (462)
.|+.++-..++
T Consensus 523 ~Al~~ylklk~ 533 (846)
T KOG2066|consen 523 KALPIYLKLQD 533 (846)
T ss_pred HHHHHHHhccC
Confidence 88888876654
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.75 E-value=13 Score=32.74 Aligned_cols=100 Identities=19% Similarity=0.185 Sum_probs=70.7
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC-CCh-----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 012504 232 GLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE-KNL-----QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSIS 305 (462)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 305 (462)
|.+....+...++..-....++++++..+-++.. ++. .+-...++ ++-.-++++++.++..=+.-|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhh
Confidence 4455555666666666667788888888777763 211 11111222 2334567788888888888899999999
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
++.++..+.+.+++.+|.++.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998888877765
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.62 E-value=7.2 Score=27.79 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 185 DALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 185 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555566666666666677777777777776666666544
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.59 E-value=10 Score=31.06 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=36.0
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh---CCCchHhHHHHHHHHHHhcCChHHH
Q 012504 184 SDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN---GLELDVALGTALVEMYSKCGHVEKA 256 (462)
Q Consensus 184 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 256 (462)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555443333333333333333 45555555555555543 1234555666666666666665554
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.49 E-value=25 Score=30.21 Aligned_cols=158 Identities=13% Similarity=0.178 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHHC---CC--CCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh-----CCCchHhHH
Q 012504 171 SSMIAGFVACDSPSDALKVFHRMKLA---NE--SPNSVTLVSLVSACTSLINVRAGESIHSYAVVN-----GLELDVALG 240 (462)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 240 (462)
..++..+.+.+++++..+.|.++..- .+ .-+....+.+++..+...+.+.....++.-.+. +-+.-..+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 34455556666666666666655321 11 123344555555555444444433333322211 111112233
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC------------CC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE------------KN---LQSWTIMISGLADNGRGNYAISLFAKMIQT-GLKPDSI 304 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~------------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~ 304 (462)
..|...|...+++.+..+++.++.+ .+ ...|..-|+.|....+-.....++++...- ..-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4566777777777777777766652 11 245666778887777777777777766532 2334444
Q ss_pred HHHHHHHHh-----hccCcHHHHHHHHHHH
Q 012504 305 SFSAILSAC-----SHLGLVDEGKNYFDEM 329 (462)
Q Consensus 305 ~~~~ll~~~-----~~~~~~~~a~~~~~~~ 329 (462)
.... ++-| .+.|.+++|..-|-+.
T Consensus 229 ImGv-IRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 229 IMGV-IRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred HHhH-HHHcCCccccccchHHHHHhHHHHH
Confidence 4333 3333 3456777665433333
No 337
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.44 E-value=1.9 Score=22.20 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=19.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 408 NYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
++..++.++...|++++|...++...+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 5666777777777777777777766543
No 338
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.41 E-value=0.76 Score=40.45 Aligned_cols=88 Identities=14% Similarity=0.217 Sum_probs=53.5
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHH
Q 012504 351 RAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (462)
..|.++.|++.|..... ++....|..=.+++.+.++. ..+++-+..+..++|+...-|-.-+.+..-.|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp-~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP-NAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCC-chhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34556666666655532 23334444444556666666 6666666666666776666666666666666777777766
Q ss_pred HHHHhcCCCcc
Q 012504 429 MVAINQKGLNK 439 (462)
Q Consensus 429 ~~~~~~~~~~~ 439 (462)
|....+.++.+
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 66666665544
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.05 E-value=2.7 Score=23.90 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666677777777777777666553
No 340
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.81 E-value=90 Score=36.01 Aligned_cols=308 Identities=14% Similarity=0.065 Sum_probs=158.6
Q ss_pred HHHHHHHhCCCchhHHHHHHHH----HHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHH
Q 012504 71 TLIRAYAKTSCSIESIKLFDEM----LKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMY 146 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (462)
.+..+-.+.+.+..|+..++.- .+.. ....-|..+...|+..++++...-+...-. -+... ..-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSL-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccH-HHHHHHH
Confidence 3444566788888999888883 2211 122334445558999999999887766411 12222 2344556
Q ss_pred HhcCChhHHHHHHhcCCCCC---hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHH-HHHHhcccchHhHH
Q 012504 147 AACKEIDVAKAVFEEMPVRD---VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL-VSACTSLINVRAGE 222 (462)
Q Consensus 147 ~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~ 222 (462)
...|+++.|...|+.+.+.+ ...++-++......|.++.++...+-.... ..+....++++ +.+.-+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 78899999999999998542 446777777777778888877766655443 23333333332 33345667777766
Q ss_pred HHHHHHHHhCCCchHhHHHH--HHHHHHhcC--ChHHHHHHHhhccC-----------CC--hhhHHHHHHHHHHcCChH
Q 012504 223 SIHSYAVVNGLELDVALGTA--LVEMYSKCG--HVEKAFKVFNLMRE-----------KN--LQSWTIMISGLADNGRGN 285 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~-----------~~--~~~~~~l~~~~~~~~~~~ 285 (462)
..+. ..+ ...|.. ++....+.. +.-.-.+.++.+.+ .. ...|..++....-..-..
T Consensus 1539 ~~l~---~~n----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS---DRN----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh---ccc----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6554 111 111211 222222211 11111111111111 00 123444433322211100
Q ss_pred HHHHHHHHHHHCCCCCCHH------HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHhcCC
Q 012504 286 YAISLFAKMIQTGLKPDSI------SFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-----TMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~ 354 (462)
..+... +..++.. -|..-+.--....+..+-+--+++..-.....| -..+|....+....+|+
T Consensus 1612 ----~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1612 ----SIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred ----HHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 011110 1222211 111111111111111111111221111101122 25678888888888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 355 IEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
++.|...+-.+.+..-+..+-....-.+..|+. ..|..++++..+.
T Consensus 1686 ~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~-~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESRLPEIVLERAKLLWQTGDE-LNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHhhccH-HHHHHHHHHHHHh
Confidence 999988776665433445555667778999999 9999999998864
No 341
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.65 E-value=13 Score=26.38 Aligned_cols=86 Identities=16% Similarity=0.253 Sum_probs=53.6
Q ss_pred hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 218 VRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
.++|..|-+.+...+- ....+-..-+..+...|+|++|..+.+.+.-||+..|.++-. -+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4556666655555441 122333333455677788888888888888888888876644 3566667777777777766
Q ss_pred CCCCCHHHHH
Q 012504 298 GLKPDSISFS 307 (462)
Q Consensus 298 ~~~p~~~~~~ 307 (462)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44444443
No 342
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.65 E-value=12 Score=31.68 Aligned_cols=58 Identities=12% Similarity=-0.021 Sum_probs=35.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
..++...|++ -++++.-..+++..|.+..+|+.-+.+.+..=+.++|..=|....+..
T Consensus 237 ~QC~L~~~e~-yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEY-YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3445555666 666666666666666666666666666666666666666665555443
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.40 E-value=12 Score=35.05 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=68.5
Q ss_pred HHcCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 279 ADNGRGNYAISL-FAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 279 ~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
...|+...|-+- +.-++...-.|+.......| +...|+++.+...+....+ -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 344555555443 33333333344444333333 4566777777777776654 344455666777777777777777
Q ss_pred HHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 358 AYHIIRNMPTE--PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 358 A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
|...-..|... .++.+...........|-+ +++...++++..++|+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~-d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLF-DKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHH-HHHHHHHHHHhccCChh
Confidence 77776665321 2333333333334445556 77777777777666543
No 344
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.31 E-value=14 Score=26.30 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHC
Q 012504 117 IGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLA 196 (462)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 196 (462)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+..||...|.+|.. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555544311 22222223345667888888888888888888888877754 4567777777777777776
Q ss_pred CCCCCHHHHH
Q 012504 197 NESPNSVTLV 206 (462)
Q Consensus 197 ~~~p~~~~~~ 206 (462)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44444443
No 345
>PRK09687 putative lyase; Provisional
Probab=83.27 E-value=32 Score=30.38 Aligned_cols=125 Identities=12% Similarity=-0.058 Sum_probs=58.3
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-cHHHHHHHHHHHHHhcCCCCchhHHHH
Q 012504 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG-LVDEGKNYFDEMARVYNIKPTMEHYGC 344 (462)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 344 (462)
++..+-...+.++.+.++ ++++..+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 344444445555555554 3455555554442 33333333444444332 12344444444433 345555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
-+.++.+.|+. .|...+-+....++. ....+.++...|.. .+...+..+.+..|
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~~~--~~~a~~ALg~ig~~--~a~p~L~~l~~~~~ 265 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKGTV--GDLIIEAAGELGDK--TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCCch--HHHHHHHHHhcCCH--hHHHHHHHHHhhCC
Confidence 66666666663 344433333323332 23455556666654 35555555555455
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.13 E-value=54 Score=32.90 Aligned_cols=185 Identities=12% Similarity=0.106 Sum_probs=88.0
Q ss_pred HhcCChHHHHHHHhhccCC-----C-----hhhHHH--HHHHHHHcCChHHHHHHHH--------HHHHCCCCCCHHHHH
Q 012504 248 SKCGHVEKAFKVFNLMREK-----N-----LQSWTI--MISGLADNGRGNYAISLFA--------KMIQTGLKPDSISFS 307 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~-----~-----~~~~~~--l~~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~ 307 (462)
+-.+++..|...+..+.+. + ...+.. ..-.+...|+.+.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 4456777777777766531 1 112222 2233445688888888887 344444444444433
Q ss_pred HH--HHHhhc--cCcHHH--HHHHHHHHHHhcCCCCc--hhHHHHH-HHHHHhc---------CCHHHHHHHH-HhCCCC
Q 012504 308 AI--LSACSH--LGLVDE--GKNYFDEMARVYNIKPT--MEHYGCM-VDMLGRA---------GLIEEAYHII-RNMPTE 368 (462)
Q Consensus 308 ~l--l~~~~~--~~~~~~--a~~~~~~~~~~~~~~~~--~~~~~~l-~~~~~~~---------~~~~~A~~~~-~~~~~~ 368 (462)
.+ +..+.. .....+ ...+++.+.....-.|+ ..++..+ +.++... ..+.++++.. +.....
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 31 111121 222223 67777766543233333 2333333 3333211 1233444444 333221
Q ss_pred CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc---CCCCC-chHH-----HHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 369 PNA-VILRSFLGACRNHGQVLYLDDNLGKLLLKL---EPELG-ANYV-----LAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 369 ~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~---~p~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
--. ..++.+...+. .|+. .+........... .|+.. ..|. .+...+...|+.++|....++...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~-~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDV-GEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 111 22332333333 6777 5544444444432 23333 2343 344457788999999998876643
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.04 E-value=2.6 Score=21.62 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
.|..+...+...+++ +.|...++...+..|.
T Consensus 3 ~~~~~a~~~~~~~~~-~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDY-DEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHccCCC
Confidence 344556666666777 7777777766666553
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.96 E-value=14 Score=30.26 Aligned_cols=73 Identities=11% Similarity=-0.024 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhcCCHHHH
Q 012504 285 NYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNI--KPTMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 358 (462)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+.....+- .+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433333333333333332 34444555544444432111 23444555555555555554444
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.94 E-value=6.5 Score=32.54 Aligned_cols=72 Identities=14% Similarity=0.030 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHH
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNM-PTEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAAS 414 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 414 (462)
.+.-+..+.+.++.++|+...+.- +.+| +...-..++..++-.|++ ++|..-++-+-++.|++. +.|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw-~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDW-EKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchH-HHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344566777888899998887664 4444 445556678888999999 999988888888888764 34444543
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.89 E-value=4.7 Score=27.14 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=25.0
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHI 361 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 361 (462)
..++.+.|+..|....+...-+|+ ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666554222222 23445556666666666665544
No 351
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.85 E-value=28 Score=29.40 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=31.6
Q ss_pred HHhcCCHHHHHHHHHhCCCC---CCHHHHH---HHHH---HHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 349 LGRAGLIEEAYHIIRNMPTE---PNAVILR---SFLG---ACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~---~l~~---~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
-...+++.+|+++|+++... .+..-|. .++. ++....+. -.+...+++..++.|.-..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~-v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADE-VNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccH-HHHHHHHHHHHhcCCccccc
Confidence 34567778888888776321 1111111 0111 12223556 66777778888887765443
No 352
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.94 E-value=60 Score=32.66 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=78.7
Q ss_pred HHhhhhcCchhHHHHHHHHHHhCCCC---ccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhH
Q 012504 109 KACGRCLLIGIGGSVHSLIFKVGLDS---DKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSD 185 (462)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (462)
+.+.+.+.+++|....+.-. |..| -.......|..+...|++++|-...-.|...+..-|.-.+..+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 34444555555554433321 2222 223456667777777777777777777766666666666666655555443
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHH------------------HHHHHHhCCCchHhHHHHHHHHH
Q 012504 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESI------------------HSYAVVNGLELDVALGTALVEMY 247 (462)
Q Consensus 186 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~------------------~~~~~~~~~~~~~~~~~~l~~~~ 247 (462)
...+ +.......+...|..++..+.. .+...-.++ -.+..+. ..+......|+..|
T Consensus 442 Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 442 IAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLY 515 (846)
T ss_pred hhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHH
Confidence 3222 1111111233344444444333 111111110 0111111 12233445588999
Q ss_pred HhcCChHHHHHHHhhccCCCh
Q 012504 248 SKCGHVEKAFKVFNLMREKNL 268 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~~~ 268 (462)
...+++.+|...+-...++++
T Consensus 516 l~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHccChHHHHHHHHhccChHH
Confidence 999999999999998887654
No 353
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.60 E-value=25 Score=35.19 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=34.6
Q ss_pred HHHHHHHhcCChhHHHHHHhcCC---CCChhhHHHHHHHHHcCCC-------hhHHHHHHHHhHHCCCCCCH
Q 012504 141 TLLRMYAACKEIDVAKAVFEEMP---VRDVVSWSSMIAGFVACDS-------PSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 141 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~ 202 (462)
++|-.|.++|++++|.++..+.. .+....+...+..|....+ -++...-|++........|+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 56777889999999999983333 2334456666666665422 23555556655544332244
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.57 E-value=44 Score=30.80 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=48.9
Q ss_pred CHHHHHHH---HHHHHHcCChHHHHHHHHHHHHhcCCC-CCchHHHHHHHHh-hcCCHHHHHHHHHHHhc
Q 012504 370 NAVILRSF---LGACRNHGQVLYLDDNLGKLLLKLEPE-LGANYVLAASVSS-LSGNWDTAAELMVAINQ 434 (462)
Q Consensus 370 ~~~~~~~l---~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 434 (462)
|...|.++ +..+.+.|-+ ..|.++.+-+..++|. ||-.-...+..|+ +.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~-rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCW-RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34444443 4577889999 9999999999999999 8766666677665 78888888888886554
No 355
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.51 E-value=6.8 Score=24.17 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=24.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 376 SFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 376 ~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
.+.-++.+.|++ +.|.+..+.+++.+|++..+
T Consensus 6 ~lAig~ykl~~Y-~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEY-EKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-H-HHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhH-HHHHHHHHHHHhhCCCcHHH
Confidence 456678899999 99999999999999988643
No 356
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.95 E-value=25 Score=30.48 Aligned_cols=83 Identities=6% Similarity=0.037 Sum_probs=47.2
Q ss_pred HHHHHhcCChHHHHHHHhhc----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-----
Q 012504 244 VEMYSKCGHVEKAFKVFNLM----REKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS----- 314 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----- 314 (462)
|.+++..++|.++....-+. ++-.+.....-|-.|.+.+.+..+.++-..-....-.-+...|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 56677777777765443322 222344555556667777777777776666554322222334555555443
Q ss_pred ccCcHHHHHHHH
Q 012504 315 HLGLVDEGKNYF 326 (462)
Q Consensus 315 ~~~~~~~a~~~~ 326 (462)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777777765
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.39 E-value=60 Score=31.01 Aligned_cols=159 Identities=11% Similarity=0.041 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHH
Q 012504 201 NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISG 277 (462)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 277 (462)
|.....+++..+.....+.-++.+..+|...| .+-..+..++.+|... ..++-..+++++.+ .|++.-..|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44455555566655555555666666665554 3344555556666555 34455555554443 233333333333
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC---C---HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKP---D---SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR 351 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p---~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (462)
|-+ ++.+.+...|.++...= -| + ...|..+... -..+.+....+...+....|...-...+..+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 333 55556666666555431 11 0 1123333321 1345566666666666554544445555555566777
Q ss_pred cCCHHHHHHHHHhCC
Q 012504 352 AGLIEEAYHIIRNMP 366 (462)
Q Consensus 352 ~~~~~~A~~~~~~~~ 366 (462)
..++.+|++++..+.
T Consensus 218 ~eN~~eai~Ilk~il 232 (711)
T COG1747 218 NENWTEAIRILKHIL 232 (711)
T ss_pred ccCHHHHHHHHHHHh
Confidence 777777777777654
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.17 E-value=81 Score=32.40 Aligned_cols=215 Identities=13% Similarity=-0.016 Sum_probs=119.3
Q ss_pred hcccchHhHHHHHHHHHHhCCCchHh-------HHHHH-HHHHHhcCChHHHHHHHhhccC--------CChhhHHHHHH
Q 012504 213 TSLINVRAGESIHSYAVVNGLELDVA-------LGTAL-VEMYSKCGHVEKAFKVFNLMRE--------KNLQSWTIMIS 276 (462)
Q Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~ 276 (462)
....++++|..++.++...-..|+.. .++.+ .......|++++|.++-+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999988877653232221 23332 2233456888888887766543 34567788888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHH---HHH--HHhhccCc--HHHHHHHHHHHHHhcCCC-----CchhHHHH
Q 012504 277 GLADNGRGNYAISLFAKMIQTGLKPDSISFS---AIL--SACSHLGL--VDEGKNYFDEMARVYNIK-----PTMEHYGC 344 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~ll--~~~~~~~~--~~~a~~~~~~~~~~~~~~-----~~~~~~~~ 344 (462)
+..-.|++++|..+..+..+..-.-+...+. .+. ..+..+|. ..+.+..+......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887766542222333222 222 22445563 333344444443321111 11234445
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CC-CCC--HHH--HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC-CchHH----
Q 012504 345 MVDMLGRAGLIEEAYHIIRNM----PT-EPN--AVI--LRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL-GANYV---- 410 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~----~~-~~~--~~~--~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~---- 410 (462)
+..++.+ .+.+..-.... .. .|. ... +..|.......|+. +.|...++++..+.... +.++.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl-~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL-DKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 5555554 33333222221 11 122 222 23567788899999 99999999988753222 22222
Q ss_pred --HHHHHHhhcCCHHHHHHHHHH
Q 012504 411 --LAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 411 --~l~~~~~~~g~~~~A~~~~~~ 431 (462)
.-.......|+..++...+.+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 122223467898888877765
No 359
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=78.70 E-value=19 Score=24.90 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHH
Q 012504 222 ESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYA 287 (462)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (462)
.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. .++..|..++.++...|...-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 345555555552 222333333332235577777777777777 7777777777777777665444
No 360
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.66 E-value=33 Score=28.23 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=65.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHH
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSI-----SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDM 348 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 348 (462)
..-+...|++++|..-|.+.++. +++... .|..-..++.+.+.++.|+.--.+... +.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 45678899999999999999986 333322 333334467788889998888777764 3443 3333344567
Q ss_pred HHhcCCHHHHHHHHHhCCC-CCCHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT-EPNAV 372 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~-~~~~~ 372 (462)
|.+...+++|++-|..+.. .|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 8888999999999988754 34433
No 361
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.33 E-value=5.6 Score=33.39 Aligned_cols=84 Identities=13% Similarity=-0.028 Sum_probs=48.0
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHH-HHHHHHHHHHHcCChHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTM-EHYGCMVDMLGRAGLIEEAYHIIRNMP-TEPNAV-ILRSFLGACRNHGQVLY 389 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~ 389 (462)
|.....++.|...|.+.. -+.|+. ..|+.-+.++.+..+++.+..--.+.. ..|+.. ....+.........+ +
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~-~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY-D 95 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc-c
Confidence 555566777777666665 345654 445555666667777776655444432 234432 333344455566666 7
Q ss_pred HHHHHHHHHHh
Q 012504 390 LDDNLGKLLLK 400 (462)
Q Consensus 390 ~a~~~~~~~~~ 400 (462)
.++..+.++..
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.20 E-value=17 Score=27.08 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 012504 286 YAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMV 346 (462)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 346 (462)
+..+-++.+..-.+.|++......+++|.+.+++..|.++|+.++.. ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 44555666666678888888888888998889999999988888764 333333454444
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.32 E-value=18 Score=30.04 Aligned_cols=128 Identities=15% Similarity=0.040 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHh-cCCCCchhHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARV-YNIKPTMEHYGCMVDM 348 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 348 (462)
+.+.-++.+.+.+...+++...++-.+.. +.|..+-..+++.++-.|++++|..-++-.-+. ....+....|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34555777888899999999888877763 235556677788889999999998877766532 0122235556666544
Q ss_pred HHhcCCHHHHH-HHHHhCCCC----CCHHHHHHHH-HHHH-Hc-CChHHHHHHHHHHHHhcCCCCC
Q 012504 349 LGRAGLIEEAY-HIIRNMPTE----PNAVILRSFL-GACR-NH-GQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 349 ~~~~~~~~~A~-~~~~~~~~~----~~~~~~~~l~-~~~~-~~-~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
- .+. ++|.--..+ .....|...+ .+.. .. |.. +.+..+-+...+..|..+
T Consensus 82 e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~g-ea~~alreqal~aa~~~i 139 (273)
T COG4455 82 E-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAG-EARTALREQALKAAPVPI 139 (273)
T ss_pred H-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcc-hHHHHHHHHHHhhCCCCC
Confidence 2 222 233322111 1233444333 3332 22 334 556666666776666543
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.94 E-value=7.5 Score=22.88 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=13.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 012504 274 MISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345555555555555555555543
No 365
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.85 E-value=1.1e+02 Score=32.38 Aligned_cols=257 Identities=8% Similarity=-0.057 Sum_probs=141.3
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC
Q 012504 155 AKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234 (462)
Q Consensus 155 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (462)
...+.+.+..+|...-...+..+.+.+.. .+...+..... .++...-...+.++...+........+..+...
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~--- 695 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS--- 695 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---
Confidence 34555566677777777777777776653 35555555543 234433334444444333221222333333332
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
++..+-...+.++...+.- ....+...+..+|...-...+.++...+..+. +..+. -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 4555555566666544321 12344555667777666666777766655432 12222 2345556666666666
Q ss_pred ccCcHHH-HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012504 315 HLGLVDE-GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 315 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
..+..+. +...+..+.+ .++..+-...+.++.+.|..+.+...+..+...++..+-...+.++...+.. + +..
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~-a~~ 841 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-V-AVP 841 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-c-hHH
Confidence 6655432 3344445543 3567777788888888887766555555555566766666677777777654 3 334
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 394 LGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
.+..+.+ +| +..+....+.++.+.+.-..+...+....+
T Consensus 842 ~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 4433332 22 344666777777665334456666655543
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.62 E-value=27 Score=30.37 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=34.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHhhccCcHHHHHH
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPDSIS-------FSAILSACSHLGLVDEGKN 324 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a~~ 324 (462)
+.+-..+.+++++|+..+.+...+|+..+..+ ...+...|...|+...-.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 45556778888999999999888887766544 3445555666666544433
No 367
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.58 E-value=81 Score=30.06 Aligned_cols=101 Identities=10% Similarity=0.100 Sum_probs=55.4
Q ss_pred CCCHHHH-HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH---hcCCHHHHHHHHHhCCC--CCCHHH
Q 012504 300 KPDSISF-SAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG---RAGLIEEAYHIIRNMPT--EPNAVI 373 (462)
Q Consensus 300 ~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~--~~~~~~ 373 (462)
.|+..|+ +.++..+...+...+|...+..+.. -.+|+...|..+++.=. .+| ...+.+.|+.+.. ..++..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 3444433 3455555666667777777777654 33455666666654321 222 5555666665522 246666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh-cCCC
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLK-LEPE 404 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~-~~p~ 404 (462)
|...+.--...|.. +.+-.++.++.+ ++|.
T Consensus 533 w~~y~~~e~~~g~~-en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 533 WMDYMKEELPLGRP-ENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHhhccCCCc-ccccHHHHHHHHhhChh
Confidence 66666655666776 666565555544 3443
No 368
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=74.08 E-value=47 Score=27.09 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHhcccchHhHHHHHHHHHHhCC--------------CchHhHHHHHHHHHHhcCChHHHHHHHh
Q 012504 207 SLVSACTSLINVRAGESIHSYAVVNGL--------------ELDVALGTALVEMYSKCGHVEKAFKVFN 261 (462)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 261 (462)
+++-.|.+..+|.+..++++.+.+..+ .+.-...|.....+.++|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 345556666777777777777665432 2223344555555555666666555555
No 369
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.95 E-value=46 Score=26.90 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 389 YLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 389 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
+.|...|+++.+.+|++. .|..-+... .+|-++..++.+.+
T Consensus 97 ~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHH
Confidence 566666777777788776 444433332 34555555555443
No 370
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=73.79 E-value=1.3e+02 Score=32.01 Aligned_cols=248 Identities=15% Similarity=0.095 Sum_probs=138.6
Q ss_pred CCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 012504 133 DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSAC 212 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 212 (462)
.++..+-...+..+.+.+..+....+...+..++...-...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 3444444555555555555443334444444555555445555544443221222233333332 4555555555665
Q ss_pred hcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHH-HHHHH
Q 012504 213 TSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNY-AISLF 291 (462)
Q Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 291 (462)
...+..+ .. .+-...+ .++..+-...+.++.+.+..+ .+...+..++...-...+.++...+..+. +...+
T Consensus 709 ~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 5443211 11 2222222 456666666666666655443 23444556777776777777777775543 34555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNA 371 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 371 (462)
..+.. .++...-...+.++...|..+.+...+..+.. .++..+-...+.++.+.+. +++...+..+...|+.
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHL 852 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCH
Confidence 55543 35677777788888888876555444555544 3566666667778877765 4566666666567788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
.+-...+.++...+.. ..+...+..+.+
T Consensus 853 ~VR~~A~~aL~~~~~~-~~a~~~L~~al~ 880 (897)
T PRK13800 853 DVRKAAVLALTRWPGD-PAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHhccCCC-HHHHHHHHHHHh
Confidence 8777778888776444 556666666655
No 371
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.32 E-value=32 Score=24.90 Aligned_cols=79 Identities=11% Similarity=0.187 Sum_probs=41.5
Q ss_pred chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 217 NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
..++|..|.+.+...+. ....+--.-+..+...|+|++|...=.....||...|.+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666666666666552 333333334455666777777744444444566666655433 356666666666666554
Q ss_pred CC
Q 012504 297 TG 298 (462)
Q Consensus 297 ~~ 298 (462)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.94 E-value=14 Score=25.03 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=29.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHhhccCcHHHHHHH
Q 012504 280 DNGRGNYAISLFAKMIQTGLKP-DS-ISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 280 ~~~~~~~a~~~~~~m~~~~~~p-~~-~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
..++.++|+..|+...++-..| +. .++..++.+++..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777653332 22 2666777777777777776654
No 373
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.92 E-value=79 Score=29.18 Aligned_cols=65 Identities=5% Similarity=-0.029 Sum_probs=45.5
Q ss_pred ChhhHHHH---HHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHh-cccchHhHHHHHHHHHH
Q 012504 166 DVVSWSSM---IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACT-SLINVRAGESIHSYAVV 230 (462)
Q Consensus 166 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 230 (462)
|...|.++ +..+.+.|-+..|+++.+-+...+..-|+.....+|+.++ +.++++-..++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 45555544 4567788999999999988888665446777777777765 66777766776666544
No 374
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.89 E-value=66 Score=28.27 Aligned_cols=66 Identities=9% Similarity=0.021 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012504 299 LKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRN 364 (462)
Q Consensus 299 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 364 (462)
..++..+...++..++..+++..-.++|.......+...|...|..+++...+.|+..-..++.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 445555666666666666666666666666554323344556666666666666666666666554
No 375
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.84 E-value=1e+02 Score=30.48 Aligned_cols=47 Identities=15% Similarity=0.023 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHHCCCCCCcchHHHHH--HH-hhhhcCchhHHHHHHHHHH
Q 012504 82 SIESIKLFDEMLKTGLRPDNFTYPFVV--KA-CGRCLLIGIGGSVHSLIFK 129 (462)
Q Consensus 82 ~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~-~~~~~~~~~a~~~~~~~~~ 129 (462)
...|.+.++...+.|.. .......++ .+ .....+++.|..+++.+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 35677777777766532 111111111 11 3345677777777777766
No 376
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.43 E-value=8.3 Score=20.15 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 385 GQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
|+. +.+..+|+++....|.++..|...+.
T Consensus 1 ~~~-~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDI-ERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcH-HHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 345 77888888888888877777776654
No 377
>PRK10941 hypothetical protein; Provisional
Probab=72.37 E-value=21 Score=31.24 Aligned_cols=65 Identities=9% Similarity=-0.086 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 343 GCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 343 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
+.+-.+|.+.++++.|+.+.+.+.. +.++.-+.--.-.|.+.|.+ ..|..-++...+..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~-~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE-HVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHhCCCchhH
Confidence 4455667788888888888877632 33455566556668888888 88888888888888888744
No 378
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.31 E-value=32 Score=28.92 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=23.7
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+...++....+.|+.++|.+.|..++..+-.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 45556777788888888888888888765433
No 379
>PRK13342 recombination factor protein RarA; Reviewed
Probab=71.25 E-value=94 Score=29.36 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=18.9
Q ss_pred CCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 012504 180 CDSPSDALKVFHRMKLANESPNSVTLVSLVSA 211 (462)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 211 (462)
.++.+.|+..+..|.+.|..|....-..+..+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 36677777777777777665554443333333
No 380
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.19 E-value=36 Score=27.43 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCc-----------HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 286 YAISLFAKMIQTGLKPDS-ISFSAILSACSHLGL-----------VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
+|+.-|++.+. +.|+. .++..+..++...+. +++|...|+.... ..|+..+|+.-++...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH
Confidence 34444444443 35554 355556555544321 3344444444432 3666666666655553
No 381
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.00 E-value=55 Score=32.44 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhh
Q 012504 201 NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNL 262 (462)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 262 (462)
+......++..|.+.|-.+.+..+.+.+-..-+ ...-|..-+.-+.+.|+...+..+-+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333444455555555555555555544433321 122333444444555555544444433
No 382
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.97 E-value=88 Score=28.94 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCC--CCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh---------CCCchH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLAN--ESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN---------GLELDV 237 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 237 (462)
.+.-+...|...|+.+.|++.|.+.+.-- .+-....|..+|....-.|+|..+..+..+.... .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 34445555555555555555555533210 0111223333444444445554444444433332 123333
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhh
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNL 262 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~ 262 (462)
..+..+.....+ ++..|.+.|-.
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHh
Confidence 344444443333 55665555543
No 383
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.71 E-value=48 Score=25.74 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=46.6
Q ss_pred HhHHHHHHHhcCChhHHHHHHhcCC---------CCChhhHHHHHHHHHcCCC-hhHHHHHHHHhHHCCCCCCHHHHHHH
Q 012504 139 GNTLLRMYAACKEIDVAKAVFEEMP---------VRDVVSWSSMIAGFVACDS-PSDALKVFHRMKLANESPNSVTLVSL 208 (462)
Q Consensus 139 ~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 208 (462)
.|.++.-....+++.....+++.+. ..+...|..++.+..+..- ---+..+|+-|++.+.++++..|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555555555655555555553 1244567777776655444 23456667777776677777777777
Q ss_pred HHHHhcc
Q 012504 209 VSACTSL 215 (462)
Q Consensus 209 ~~~~~~~ 215 (462)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7777554
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.96 E-value=1.3e+02 Score=30.32 Aligned_cols=163 Identities=12% Similarity=0.050 Sum_probs=76.3
Q ss_pred ccHHHHHHHHH-hCCCchhHHHHHHHHHHCCCCCCcc-----hHHHHHHHhhhhcCchhHHHHHHHHHHhCCC----Ccc
Q 012504 67 FAYNTLIRAYA-KTSCSIESIKLFDEMLKTGLRPDNF-----TYPFVVKACGRCLLIGIGGSVHSLIFKVGLD----SDK 136 (462)
Q Consensus 67 ~~y~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 136 (462)
.++-.+...+. ...+++.|...+++....--+++.. .-..++..+.+.+... |...++..++.--. +-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 33444555554 4567777777777665432222221 1112333344444444 66666665543211 112
Q ss_pred chHhHH-HHHHHhcCChhHHHHHHhcCCC-----CC--hhhHHHHHHHH--HcCCChhHHHHHHHHhHHCCC--------
Q 012504 137 YIGNTL-LRMYAACKEIDVAKAVFEEMPV-----RD--VVSWSSMIAGF--VACDSPSDALKVFHRMKLANE-------- 198 (462)
Q Consensus 137 ~~~~~l-~~~~~~~~~~~~A~~~~~~~~~-----~~--~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~-------- 198 (462)
..+..+ +..+...++...|.+.++.+.. .| ..++..++.+. .+.+..+++.+.++.+.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 222332 2222233677777777666541 12 22233333322 334555666666666533211
Q ss_pred -CCCHHHHHHHHHHHh--cccchHhHHHHHHHHHH
Q 012504 199 -SPNSVTLVSLVSACT--SLINVRAGESIHSYAVV 230 (462)
Q Consensus 199 -~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 230 (462)
.|...++..+++.++ ..|+++.+...++++.+
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223445555555443 44555566665555543
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.92 E-value=51 Score=28.70 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=34.4
Q ss_pred HHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHH-----
Q 012504 174 IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYS----- 248 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 248 (462)
|.+++..++|.+++...-+--+..-+........-|-.|.+.+.+..+.++-.......-.-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 344455555555544443332211111122222233334455555554444444433221222222433333332
Q ss_pred hcCChHHHHHHH
Q 012504 249 KCGHVEKAFKVF 260 (462)
Q Consensus 249 ~~~~~~~a~~~~ 260 (462)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 345555555554
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.71 E-value=22 Score=29.25 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 368 EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 368 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
.|++.++..++.++...|+. ++|.+..+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~-~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDP-EEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCC
Confidence 34555555555555555555 555555555555555
No 387
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.03 E-value=16 Score=21.94 Aligned_cols=32 Identities=6% Similarity=0.147 Sum_probs=28.0
Q ss_pred HhhcChhHHHHHHHHHHHhCCCCchhhhhhHh
Q 012504 11 QLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI 42 (462)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 42 (462)
...|-.++++.+++.|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34477789999999999999999999999988
No 388
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.58 E-value=47 Score=26.87 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhcCCCCc-hhHHH-----HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 012504 319 VDEGKNYFDEMARVYNIKPT-MEHYG-----CMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQ 386 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 386 (462)
++.|..+|+.+.+....+.+ ..... ..+-.|.+.|.+++|.+++++....|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHccc
Confidence 45666667666654221111 11111 2234567778888888888776555555544444444444433
No 389
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.46 E-value=9.5 Score=23.54 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=25.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 408 NYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
....++.++.+.|++++|.++.+.+.+..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3556788899999999999999998876654
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.25 E-value=32 Score=23.85 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=26.7
Q ss_pred hcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHH
Q 012504 148 ACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDA 186 (462)
Q Consensus 148 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 186 (462)
..|+.+.|.+++..+. ..+..|..++.++...|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577777777777777 6677777777777776665544
No 391
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.89 E-value=48 Score=24.87 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=32.6
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 186 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
..+-++.+...++.|++......+++|.+.+|+..|..+++-+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555556667788887777888888888888888777766543
No 392
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=66.40 E-value=85 Score=27.82 Aligned_cols=43 Identities=2% Similarity=-0.018 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 121 GSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
.++|+.+.+.++.|.-..+.-+.-.+...=.+...+.+++.+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 3455555555555555555555555555555555666655554
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.57 E-value=25 Score=24.83 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=32.6
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCC----C-----CchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPE----L-----GANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
..+.|++ ..|.+.+.+....... . ......++......|++++|...+++.++
T Consensus 8 ~~~~~dy-~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDY-SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCH-HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466777 6665555554432111 1 12344566777788999999988887764
No 394
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.12 E-value=51 Score=23.95 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=45.1
Q ss_pred CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHH
Q 012504 116 LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKL 195 (462)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 195 (462)
..++|..+.+.+...+- ....+--.-+..+...|++++|...=.....||...|.+|.. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45667777777666553 222222333445667788888855555555677777766644 467777777777777765
Q ss_pred CC
Q 012504 196 AN 197 (462)
Q Consensus 196 ~~ 197 (462)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 395
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.87 E-value=18 Score=24.41 Aligned_cols=38 Identities=5% Similarity=0.088 Sum_probs=29.1
Q ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhH
Q 012504 3 SRHIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRF 41 (462)
Q Consensus 3 ~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 41 (462)
+.+....|..|..-++|.+|.+.|.++| ..+....+.|
T Consensus 34 ~PtV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 34 NPTVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred CchHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4567888999999999999999999998 3344444443
No 396
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.09 E-value=16 Score=30.58 Aligned_cols=56 Identities=16% Similarity=0.050 Sum_probs=29.0
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 350 GRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
.+.++.+.|.+++.++.. +.....|..+...-.+.|+. +.|-+.+++..+++|++.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~-daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEF-DAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccH-HHHHHHHHHHHcCCcccc
Confidence 344555555555555432 12344555555555555555 555555555555555553
No 397
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.05 E-value=24 Score=34.01 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=31.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
|.+...+.|..-+|-.++..... ...+.++..+.+++....+. +.|++.|+.+.++.|+++.+-..
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i-~~a~~~~~~a~~~~~~~~~~~~~ 715 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI-SGALEAFRQALKLTTKCPECENS 715 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh-HHHHHHHHHHHhcCCCChhhHHH
Confidence 33344444444444444433211 12234444455555555555 55555555555555555544433
No 398
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.48 E-value=1.2e+02 Score=31.59 Aligned_cols=27 Identities=26% Similarity=0.408 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccC
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMRE 265 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 265 (462)
.|..|+..|...|+.++|++++.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 355566666666666666666666554
No 399
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.97 E-value=47 Score=25.81 Aligned_cols=63 Identities=10% Similarity=-0.064 Sum_probs=38.6
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCC
Q 012504 88 LFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE 151 (462)
Q Consensus 88 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (462)
+.+.+.+.|++++..- ..++..+...++.-.|.++++.+.+.++..+..|.-.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4455566676655443 35666666676677888888888877766555544344455555543
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.18 E-value=32 Score=28.30 Aligned_cols=53 Identities=17% Similarity=0.078 Sum_probs=35.5
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
....+.+......+...+.-...|++.+|..++.++...|+.++|.+...++.
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555554444444433557888888888888888888888888777764
No 401
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.11 E-value=1.6e+02 Score=28.74 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=24.9
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCC-CCchHHHHHHHHh-hcCCHHHHHHHHHHH
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPE-LGANYVLAASVSS-LSGNWDTAAELMVAI 432 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 432 (462)
+.+.|-+ ..|.++.+.+.+++|. ||-....++..|+ +..+|+--+++++..
T Consensus 352 l~~RGC~-rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCW-RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCCh-HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555 5555555555555555 4444444444443 444555444444443
No 402
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.04 E-value=28 Score=20.91 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=19.2
Q ss_pred HhCCCchhHHHHHHHHHHCCCCCCcchHHHHHH
Q 012504 77 AKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVK 109 (462)
Q Consensus 77 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 109 (462)
.+.|-..++..+++.|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555666666666666666555555555543
No 403
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.67 E-value=13 Score=28.07 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=23.5
Q ss_pred HhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 012504 77 AKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKAC 111 (462)
Q Consensus 77 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 111 (462)
-..|.-..|..+|+.|+++|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3346667888889999888877764 66666543
No 404
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.53 E-value=1.9e+02 Score=29.35 Aligned_cols=182 Identities=9% Similarity=0.148 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhCCCch---HhHHHHHHHHHHhcCChHHHHHHHhhccC-CCh----------hhHHHHHHHHHHcCChHH
Q 012504 221 GESIHSYAVVNGLELD---VALGTALVEMYSKCGHVEKAFKVFNLMRE-KNL----------QSWTIMISGLADNGRGNY 286 (462)
Q Consensus 221 a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~~~ 286 (462)
-..++.+|...--.|+ ..+...++-.|....+++..+++.+.++. ||. ..|.-.++--.+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 3445566665432333 34555566677777778887777777664 221 112222222334567777
Q ss_pred HHHHHHHHHHC--CCCCCHHH-----HHHHH--HHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC-HH
Q 012504 287 AISLFAKMIQT--GLKPDSIS-----FSAIL--SACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL-IE 356 (462)
Q Consensus 287 a~~~~~~m~~~--~~~p~~~~-----~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 356 (462)
|+...-.|.++ .+.||... |.-+. ..|...+..+.|..+|++.- .+.|+...--.+...+...|. ++
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhcc
Confidence 88777777665 35565432 22111 23445566777888887765 556664332222222222232 22
Q ss_pred HHHHH------HHhC-CCCCC---HHHH---HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 357 EAYHI------IRNM-PTEPN---AVIL---RSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 357 ~A~~~------~~~~-~~~~~---~~~~---~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
...++ +..+ ..+.. ...| ...+.+-.-.+++ ..|.+..+.+.++.|+..
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~-~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDY-QKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCH-HHHHHHHHHHhccCCcee
Confidence 22111 1111 11111 1111 1234455567888 999999999999888753
No 405
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.23 E-value=13 Score=32.55 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=28.0
Q ss_pred CCccc-HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchH
Q 012504 64 PPLFA-YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTY 104 (462)
Q Consensus 64 ~~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 104 (462)
|+..+ ||..|....+.||+++|+.++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44444 567788888888888888888888877765333333
No 406
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=59.13 E-value=73 Score=23.76 Aligned_cols=60 Identities=17% Similarity=0.039 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH-------hcCCCCCchH----HHHHHHHhhcCCHHHHHHHHHH
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLL-------KLEPELGANY----VLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
...+..|..++...|++ +++....+.++ +++.+....| .+-+.++...|+.++|+..|+.
T Consensus 55 A~chA~Ls~A~~~Lgry-~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRY-DECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 34455566667777777 65555444443 3455554333 3455677788999999998874
No 407
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.98 E-value=1.6e+02 Score=27.77 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=29.7
Q ss_pred HHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 012504 272 TIMISGLAD---NGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG 317 (462)
Q Consensus 272 ~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 317 (462)
..++.++.+ .++++.|+.++..|.+.|..|....-..+..++...|
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 334444443 4788889999999998887776555555555544433
No 408
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.95 E-value=1.8e+02 Score=28.00 Aligned_cols=177 Identities=8% Similarity=0.067 Sum_probs=122.6
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
+.|.....+++..+..+-.+.-...+-.+|.. .+-..|..+++.|... ..++-..+|+++.+..+. |...-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44566667788888888888888888888774 4567888899999998 678889999998886432 4444445555
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPT------MEHYGCMVDMLGRAGLIEEAYHIIRNMPTE----PNAVILRSFLGAC 381 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~l~~~~ 381 (462)
-|.+ ++...+..+|.++... +-|. ...|..|...- ..+.+....+...+... .-...+.-+..-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 5544 8888888888888764 2231 23555555432 34667777776666432 2344555566778
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
....++ .++++++..+++.+..+..+...++..+..
T Consensus 216 s~~eN~-~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENW-TEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCH-HHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 888999 999999998888877776666666655543
No 409
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.82 E-value=40 Score=21.58 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=7.3
Q ss_pred HHHHHHhcCChHHHHHHHh
Q 012504 243 LVEMYSKCGHVEKAFKVFN 261 (462)
Q Consensus 243 l~~~~~~~~~~~~a~~~~~ 261 (462)
++.++...|++++|.+++.
T Consensus 29 vI~gllqlg~~~~a~eYi~ 47 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIK 47 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3344444444444444333
No 410
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.39 E-value=50 Score=25.55 Aligned_cols=63 Identities=19% Similarity=0.057 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 012504 355 IEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 421 (462)
.+.|.++.+-|. ...............|++ ..|.++.+.+...+|++.......+.+|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~-~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDY-QWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-H-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456677777775 334444456667889999 999999999999999998888888888766553
No 411
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=56.78 E-value=2.6e+02 Score=29.89 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=60.8
Q ss_pred HhHHHHHHHHHHhcC--ChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 237 VALGTALVEMYSKCG--HVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
......++.+|.+.+ ++++|+..+.++.+.+...-...++..+-.- ++-++|+.++.. - |.. ..++-|-.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLv---Dvn~Ly~~ALG~--Y-Dl~--Lal~VAq~ 883 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLV---DVNKLYDVALGT--Y-DLE--LALMVAQQ 883 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeec---cHHHHHHHHhhh--c-CHH--HHHHHHHH
Confidence 344566778888887 7888888888887664444333333333222 223333333321 0 111 11222334
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.+.|+.+=+-+++++.+ ++|+..-| .|+. ..+++++|++.+.++
T Consensus 884 SQkDPKEYLPfL~~L~~---l~~~~rry--~ID~--hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 884 SQKDPKEYLPFLQELQK---LPPLYRRY--KIDD--HLKRYEKALRHLSAC 927 (928)
T ss_pred hccChHHHHHHHHHHHh---CChhheee--eHhh--hhCCHHHHHHHHHhh
Confidence 55677777777777753 34443222 2222 357888888877654
No 412
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.66 E-value=1.5e+02 Score=26.48 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----------cCCHHH
Q 012504 288 ISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----------AGLIEE 357 (462)
Q Consensus 288 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 357 (462)
.++++.+...++.|.-..|..+.-.+.+.=.+.+.+.+|+.+..+ ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 356667777777777777766666666666677777777777653 1124444444432 366666
Q ss_pred HHHHHHhCC
Q 012504 358 AYHIIRNMP 366 (462)
Q Consensus 358 A~~~~~~~~ 366 (462)
.+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 666666544
No 413
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.62 E-value=78 Score=24.23 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=49.2
Q ss_pred CCchhHHHHHHHHHHhcCC---HHHHHHHHHhCCC--CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 336 KPTMEHYGCMVDMLGRAGL---IEEAYHIIRNMPT--EPN--AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
.++..+--.+..++.+..+ ..+-+.+++++.. +|+ ......|.-++.+.+++ +.+.++.+.+.+.+|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY-~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEY-SKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhH-HHHHHHHHHHHhhCCCcH
Confidence 5666666667777776655 4556677777642 232 23334466678899999 999999999999998876
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.10 E-value=77 Score=23.14 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
-|..++..|...|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366677777777777777777777665
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.08 E-value=52 Score=31.97 Aligned_cols=134 Identities=13% Similarity=0.036 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH-hcCCHHHHHHHHHhCCC-CCC--HHH
Q 012504 300 KPDSISFSAILSACSHL--GLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG-RAGLIEEAYHIIRNMPT-EPN--AVI 373 (462)
Q Consensus 300 ~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~-~~~--~~~ 373 (462)
-|+..+..+++.-.... ..-+-+-.++..|.. ...|--...| +...|. ..|+...|...+..+.. .|. -..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35555555554333221 223344555555533 3333322222 223343 46888899888877632 222 223
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
...|.......|.. ..|-.++.+.+.+....|-++..++++|....+.+.|++.|+...+...
T Consensus 645 ~v~la~~~~~~~~~-~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLH-LDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhh-ccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 34566777778877 8889999999998888888899999999999999999999998766543
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.41 E-value=1.4e+02 Score=25.99 Aligned_cols=124 Identities=17% Similarity=0.179 Sum_probs=59.3
Q ss_pred HHCCCCCCHHHHHHHHHHHhcccchH-hHHHHHHHHHH---hC--CCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC
Q 012504 194 KLANESPNSVTLVSLVSACTSLINVR-AGESIHSYAVV---NG--LELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN 267 (462)
Q Consensus 194 ~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 267 (462)
.+.+.++|......++..+...+.-+ .-.++.+.+.+ .+ -.-++.....+...|.+.|++.+|+..|-.-..+.
T Consensus 41 ~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~ 120 (260)
T PF04190_consen 41 EKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPS 120 (260)
T ss_dssp HHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHH
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChh
Confidence 34455555555555555444332211 12223333332 22 12356778888899999999999988876654444
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
...+..++......|...++ +...-..++ -|...++...|...++...+.
T Consensus 121 ~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 121 AFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 44333333333333333222 122222233 345557888888877776654
No 417
>PF15469 Sec5: Exocyst complex component Sec5
Probab=54.58 E-value=83 Score=25.55 Aligned_cols=138 Identities=8% Similarity=0.058 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 012504 282 GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHI 361 (462)
Q Consensus 282 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 361 (462)
+..+.-...++..... ....+..++..-.+......+..++++..--+.+|-. +.-+.+.|+++.+...
T Consensus 40 ~~~~~L~~~l~~~~~~----~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~-------L~~~i~~~dy~~~i~d 108 (182)
T PF15469_consen 40 SGTEKLEESLNEASSK----ANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSN-------LRECIKKGDYDQAIND 108 (182)
T ss_pred ccHHHHHHHHHHHHHH----HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHcCcHHHHHHH
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 362 IRNMPTEPNAV--ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 362 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
|.++..-.... ....+-..+.......+.....+..-+...| ...++..++++.+.+.+..+
T Consensus 109 Y~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~----------------~s~~~~~~~i~~Ll~L~~~~ 172 (182)
T PF15469_consen 109 YKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP----------------SSQEEFLKLIRKLLELNVEE 172 (182)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------------CCHHHHHHHHHHHHhCCCCC
Q ss_pred CCccceE
Q 012504 440 VPGCSWV 446 (462)
Q Consensus 440 ~~~~~~~ 446 (462)
+|.+.|+
T Consensus 173 dPi~~~l 179 (182)
T PF15469_consen 173 DPIWYWL 179 (182)
T ss_pred CHHHHHH
No 418
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.58 E-value=11 Score=35.31 Aligned_cols=98 Identities=10% Similarity=-0.036 Sum_probs=69.5
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCC
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTME-HYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQ 386 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~ 386 (462)
+..+...++++.|..++.++.+ +.||-. .|..-..++.+.+++..|+.=+..+.+ .|. ...|..=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4456677899999999999984 577643 344444788899999999877666543 333 2333333456677788
Q ss_pred hHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 387 VLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 387 ~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
+ .+|...|+......|+++.+...
T Consensus 88 ~-~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 88 F-KKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred H-HHHHHHHHHhhhcCcCcHHHHHH
Confidence 8 89999999999999999854443
No 419
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.34 E-value=97 Score=23.76 Aligned_cols=66 Identities=11% Similarity=-0.020 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHhhccC---cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 300 KPDSISFSAILSACSHLG---LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.++..+--.+..++.++. +..+.+.+++.+.+............-|.-++.+.++++++.++.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 444444444555555443 345566666666642011112333334455666777777777766654
No 420
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=54.30 E-value=70 Score=22.09 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=26.0
Q ss_pred hcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChH
Q 012504 249 KCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGN 285 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (462)
.....+++.++++.+...+..+|..+..++...|...
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3445677777777777777777777777777666543
No 421
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=53.95 E-value=27 Score=30.70 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=32.1
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchH
Q 012504 350 GRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANY 409 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 409 (462)
.+.|+.++|..+|+.... +.++.....+....-.+++. -.|.+++-+++...|.+..++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i-v~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI-VEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh-HhhhhhhheeeeeCCCchHHH
Confidence 355666666666665421 22344444444444445555 666666666666666665443
No 422
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.84 E-value=1.6e+02 Score=29.25 Aligned_cols=86 Identities=9% Similarity=-0.068 Sum_probs=66.6
Q ss_pred HHhcCCHHHHHHHHHh-CCCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 012504 349 LGRAGLIEEAYHIIRN-MPTE-------PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG 420 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~-~~~~-------~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 420 (462)
..+..++..+.++|.. |..- .-....+.+-.+|....+. +.|.++++++.+.+|.++-.......+....|
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL-D~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL-DNAVEVYQEAEEVDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 3466788888888765 3211 1144567777788899999 99999999999999998877778888888899
Q ss_pred CHHHHHHHHHHHhcC
Q 012504 421 NWDTAAELMVAINQK 435 (462)
Q Consensus 421 ~~~~A~~~~~~~~~~ 435 (462)
+.++|+..+......
T Consensus 443 ~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSS 457 (872)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999988776543
No 423
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.48 E-value=1.7e+02 Score=26.29 Aligned_cols=81 Identities=19% Similarity=0.027 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 319 VDEGKNYFDEMARVYNI---KPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
.+.|.+.|+........ ..++.....+.....+.|+.+.-..+++.....++...-..++.+.+...+. +...+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~-~~~~~~l 224 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDP-ELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-H-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCH-HHHHHHH
Confidence 34455555555442011 2233333344444445555444444444443334455555555555555555 5555555
Q ss_pred HHHHh
Q 012504 396 KLLLK 400 (462)
Q Consensus 396 ~~~~~ 400 (462)
+.+..
T Consensus 225 ~~~l~ 229 (324)
T PF11838_consen 225 DLLLS 229 (324)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 55554
No 424
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.25 E-value=94 Score=29.06 Aligned_cols=55 Identities=11% Similarity=0.011 Sum_probs=27.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh--------cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHH
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLK--------LEPELGANYVLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
|++..+-.||+ ..|.++++.+.= ..+-...++..++.+|.-.+++.+|++.|...
T Consensus 128 LlRvh~LLGDY-~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDY-YQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCH-HHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555 555555444321 11223345555666666666666666665543
No 425
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.63 E-value=2e+02 Score=26.84 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=8.3
Q ss_pred hcCChHHHHHHHhhcc
Q 012504 249 KCGHVEKAFKVFNLMR 264 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~~ 264 (462)
..+++..|.++|+.+.
T Consensus 143 n~~~y~aA~~~l~~l~ 158 (379)
T PF09670_consen 143 NRYDYGAAARILEELL 158 (379)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 4455555555555544
No 426
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=52.61 E-value=20 Score=25.99 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=29.7
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh
Q 012504 4 RHIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI 42 (462)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 42 (462)
...+..|..|...++|.+|.+.|.++| ..+....+.|-
T Consensus 65 PtViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 65 PTVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred ChHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 567889999999999999999999998 33444444443
No 427
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=52.37 E-value=1.2e+02 Score=28.68 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=50.1
Q ss_pred CHHHHHHHhccCCCCCCcccHHHHHHHHHhC-----------CCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCc
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKT-----------SCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLI 117 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 117 (462)
++++|.+..+.+|. ...+...+...-+. +.+++-+++++.+.+.| .+| ....-+..|.+.+++
T Consensus 29 d~~eav~y~k~~p~---~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y 102 (480)
T TIGR01503 29 DLQDAVDYHKSIPA---HKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRY 102 (480)
T ss_pred CHHHHHHHHHhCCc---cccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccH
Confidence 78888888888864 23333333333322 34577777888887765 123 344567778888888
Q ss_pred hhHHHHHHHHHHhC
Q 012504 118 GIGGSVHSLIFKVG 131 (462)
Q Consensus 118 ~~a~~~~~~~~~~~ 131 (462)
+.|...++.-.+.|
T Consensus 103 ~~A~~~l~~s~~~~ 116 (480)
T TIGR01503 103 DEAAVGIKESIKAG 116 (480)
T ss_pred HHHHHHHHhhhhcC
Confidence 88888887766643
No 428
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.07 E-value=3.4e+02 Score=29.34 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=57.4
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCC------------------------------C--hhhHHHHHHHHHHcCChHHHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREK------------------------------N--LQSWTIMISGLADNGRGNYAIS 289 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------~--~~~~~~l~~~~~~~~~~~~a~~ 289 (462)
.+..+|..+|+..+|+..|.+.... . ..-|...++.+-+.+-.+.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444577888888888888766520 0 1124555666666666666666
Q ss_pred HHHHHHHCCCCCC----HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHH
Q 012504 290 LFAKMIQTGLKPD----SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIE 356 (462)
Q Consensus 290 ~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (462)
+-..+++. ++++ +.+++.+.......|.+-+|... +.+.............++-.++.+|.++
T Consensus 1005 lA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a---i~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1005 LAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKA---ILRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHH---HHcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 66666554 2221 12444555555555555444433 2221011111334555566666666544
No 429
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.95 E-value=92 Score=22.76 Aligned_cols=27 Identities=7% Similarity=0.217 Sum_probs=22.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKL 195 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 195 (462)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888766
No 430
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.74 E-value=88 Score=28.11 Aligned_cols=91 Identities=18% Similarity=0.027 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--C--C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--E--P--NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
.|.-=..-|.+..++..|...|.+... . | +...|+.=..+....|++ ..++.-..+++..+|.....|..=+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny-Rs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY-RSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 344445668888899999999987632 1 2 234555555556677888 88888888888999999888888888
Q ss_pred HHhhcCCHHHHHHHHHHH
Q 012504 415 VSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~ 432 (462)
++....++.+|....++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 888888877776665543
No 431
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.14 E-value=84 Score=25.21 Aligned_cols=59 Identities=7% Similarity=-0.133 Sum_probs=28.4
Q ss_pred HHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 93 LKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 93 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
...|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-+..+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344554333322 34444444444555666666666555555544444444555555544
No 432
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.94 E-value=1.2e+02 Score=23.66 Aligned_cols=76 Identities=9% Similarity=0.211 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---------CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE---------KNLQSWTIMISGLADNGR-GNYAISLFAKMIQTGLKPDSISFSAIL 310 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 310 (462)
+.++.-....+++.....+++.+.. .+...|..++.+..+..- ---+..+|+-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444445555555555444421 233455556655544433 223455566666555666666666666
Q ss_pred HHhhcc
Q 012504 311 SACSHL 316 (462)
Q Consensus 311 ~~~~~~ 316 (462)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 665543
No 433
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=50.74 E-value=70 Score=27.81 Aligned_cols=56 Identities=20% Similarity=0.076 Sum_probs=31.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
..+.+.+++ +.|....+....++|+++.-..--+-+|.+.|...-|++-++...++
T Consensus 189 ~~~~~e~~~-~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 189 AALLRELQW-ELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHhhch-HHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 345555556 66666666666666666555555555566666655555555554433
No 434
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.59 E-value=2.2e+02 Score=26.75 Aligned_cols=197 Identities=10% Similarity=0.031 Sum_probs=80.2
Q ss_pred HHHHHCCCCCCcch--HHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccc--hHhHHHHHHHhcCChhHHHHHHhcCCCC
Q 012504 90 DEMLKTGLRPDNFT--YPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKY--IGNTLLRMYAACKEIDVAKAVFEEMPVR 165 (462)
Q Consensus 90 ~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 165 (462)
+.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.-...
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 33334455544322 223333444455543 333344445433321 1123344555667777666666543311
Q ss_pred ----ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHH--HHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhH
Q 012504 166 ----DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVT--LVSLVSACTSLINVRAGESIHSYAVVNGLELDVAL 239 (462)
Q Consensus 166 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 239 (462)
+..-. +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+.. +.+.|..++...
T Consensus 95 ~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~----Ll~~g~~~~~~d 165 (413)
T PHA02875 95 DDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL----LIDHKACLDIED 165 (413)
T ss_pred cccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhcCCCCCCCC
Confidence 11111 122222334443 33444445555443321 1122333445555544333 334443322110
Q ss_pred --HHHHHHHHHhcCChHHHHHHHhhccCCChhh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 012504 240 --GTALVEMYSKCGHVEKAFKVFNLMREKNLQS---WTIMISGLADNGRGNYAISLFAKMIQTGLKPDS 303 (462)
Q Consensus 240 --~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 303 (462)
-.+-+...+..|+.+-+.-+++.-..++... ....+...+..|+.+ +.+-+.+.|..++.
T Consensus 166 ~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 166 CCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 0112223345566666655555443332211 112333334455543 34445556666553
No 435
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.32 E-value=2e+02 Score=25.89 Aligned_cols=51 Identities=8% Similarity=0.201 Sum_probs=26.3
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHII 362 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 362 (462)
+..+.|+..+|.+.++.+.+...+..-......|+.++...+-+.+...++
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777666654222112233345566665555554444443
No 436
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.23 E-value=2.3e+02 Score=26.61 Aligned_cols=198 Identities=12% Similarity=0.072 Sum_probs=92.6
Q ss_pred HHHHHHHHhCCCCchhh--hhhHh-hhhhcCCHHHHHHHhccCCCCCCcc--cHHHHHHHHHhCCCchhHHHHHHHHHHC
Q 012504 21 QLHTLFLKTSLDHNTCI--ISRFI-LTSLSISLHFTRSLFNNLPVTPPLF--AYNTLIRAYAKTSCSIESIKLFDEMLKT 95 (462)
Q Consensus 21 ~~~~~~~~~g~~~~~~~--~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~--~y~~li~~~~~~g~~~~a~~~~~~m~~~ 95 (462)
++.+.+++.|..|+... ....+ .+...|+.+-+.-+++.-.. |+.. .....+...+..|+.+.+..+++ .
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~ 90 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYPDIESELHDAVEEGDVKAVEELLD----L 90 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCcccHHHHHHHCCCHHHHHHHHH----c
Confidence 34555666787776543 22223 44456677666555543222 3322 11234555566777766544443 3
Q ss_pred CCCCCcc---hHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccch--HhHHHHHHHhcCChhHHHHHHhcCCCC---Ch
Q 012504 96 GLRPDNF---TYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYI--GNTLLRMYAACKEIDVAKAVFEEMPVR---DV 167 (462)
Q Consensus 96 g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~ 167 (462)
|...+.. .-.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+++.-... |.
T Consensus 91 ~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~ 166 (413)
T PHA02875 91 GKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC 166 (413)
T ss_pred CCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Confidence 3221110 111233334455554 44555566676655422 133455566778877776666654322 22
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHH---HHHHHHHHhcccchHhHHHHHHHHHHhCCCch
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVT---LVSLVSACTSLINVRAGESIHSYAVVNGLELD 236 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 236 (462)
.-++.|.. .+..|+.+ +.+.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..++
T Consensus 167 ~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 167 CGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 22222322 23345433 3444555565554322 123333333445443 3444555565554
No 437
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.42 E-value=1.2e+02 Score=23.57 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=16.6
Q ss_pred HHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 012504 211 ACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCG 251 (462)
Q Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (462)
.+...++.-.|..+++.+.+.+...+..|.-.-++.+...|
T Consensus 29 ~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 29 LLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33333333444444444444443333333333334444433
No 438
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.30 E-value=1.2e+02 Score=22.94 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=30.2
Q ss_pred HHHHHHHHHh--cCCCCCchHHHHHHHHhhcCCHHHHHHHHH
Q 012504 391 DDNLGKLLLK--LEPELGANYVLAASVSSLSGNWDTAAELMV 430 (462)
Q Consensus 391 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (462)
...+|..+.+ ++...+..|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3667777765 345555677788888889999999998886
No 439
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.80 E-value=47 Score=21.25 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=8.8
Q ss_pred HHHHhhccCcHHHHHHHHHHH
Q 012504 309 ILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~ 329 (462)
++.++...|++++|.++.+.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444444
No 440
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.06 E-value=2e+02 Score=25.34 Aligned_cols=84 Identities=14% Similarity=-0.031 Sum_probs=42.6
Q ss_pred cccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh----cCChHHHHHHHhhccCCC-hhhHHHHHHHHHH----cCCh
Q 012504 214 SLINVRAGESIHSYAVVNGLELDVALGTALVEMYSK----CGHVEKAFKVFNLMREKN-LQSWTIMISGLAD----NGRG 284 (462)
Q Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~ 284 (462)
..+++..+...+......+.. .....+...|.. ..+...|.++|...-+.+ +.....|...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 445666666666666654322 222333333332 234566666666554433 2334444444444 2356
Q ss_pred HHHHHHHHHHHHCCCC
Q 012504 285 NYAISLFAKMIQTGLK 300 (462)
Q Consensus 285 ~~a~~~~~~m~~~~~~ 300 (462)
.+|..+++++.+.|..
T Consensus 130 ~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 130 VKALKYYEKAAKLGNV 145 (292)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 6666666666666544
No 441
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.72 E-value=45 Score=29.41 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSA 308 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 308 (462)
-|+..|..-.+.||+++|+.++++..+.|..--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 466778888888888888888888888776544444433
No 442
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.49 E-value=2.3e+02 Score=25.70 Aligned_cols=132 Identities=10% Similarity=0.097 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHHHcCC------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC
Q 012504 267 NLQSWTIMISGLADNGR------------GNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN 334 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~------------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 334 (462)
|+.+|-.++..--..-. .+.-+.+++++.+.+. -+.......+..+.+..+.+...+-|+++...
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-- 94 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-- 94 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--
Confidence 56777777754332211 3445667777777632 34556666677777777777777778777764
Q ss_pred CCCchhHHHHHHHHHHh---cCCHHHHHHHHHhC-------CCCC--------C-----HHHHHHHHHHHHHcCChHHHH
Q 012504 335 IKPTMEHYGCMVDMLGR---AGLIEEAYHIIRNM-------PTEP--------N-----AVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 335 ~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~-------~~~~--------~-----~~~~~~l~~~~~~~~~~~~~a 391 (462)
.+-+...|...++.... .-.++....+|.+. .... + ..++..+...+...|-. +.|
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~-E~A 173 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT-ERA 173 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch-HHH
Confidence 22345666666654433 22355555555443 1110 0 11222222334456666 777
Q ss_pred HHHHHHHHhcC
Q 012504 392 DNLGKLLLKLE 402 (462)
Q Consensus 392 ~~~~~~~~~~~ 402 (462)
..+++.+.+.+
T Consensus 174 va~~Qa~lE~n 184 (321)
T PF08424_consen 174 VALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHH
Confidence 77777777653
No 443
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.13 E-value=28 Score=26.44 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=24.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
..-|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446677899999999999988874 56666543
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.93 E-value=84 Score=27.13 Aligned_cols=16 Identities=25% Similarity=0.408 Sum_probs=6.6
Q ss_pred HHHHhCCCchhHHHHH
Q 012504 74 RAYAKTSCSIESIKLF 89 (462)
Q Consensus 74 ~~~~~~g~~~~a~~~~ 89 (462)
+.+...|++..|+.-|
T Consensus 18 rl~l~~~~~~~Av~q~ 33 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQF 33 (247)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3444444444444333
No 445
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.60 E-value=79 Score=21.82 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhH
Q 012504 20 HQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIES 85 (462)
Q Consensus 20 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a 85 (462)
..|++.+.+.|+- +......+- +.-.+.+.+.++++-+|. ....+|..+..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vl-t~~~~e~I~--~~~tr~~q~~~LLd~L~~-RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF-TPDMIEEIQ--AAGSRRDQARQLLIDLET-RGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHH--cCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCchHHH
Confidence 4578888888753 333344444 333478888888888887 6777888888888777655443
No 446
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.50 E-value=2e+02 Score=24.72 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=71.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHhcCC
Q 012504 277 GLADNGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTME-HYGCMVDMLGRAGL 354 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 354 (462)
-|....+++.|+..+.+.+.. .|+.. -|+.=+.++.+..+++.+..=-.... .+.||.. ....+..++.....
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhcc
Confidence 345556788999988877764 56664 44555566777888888877666655 5577743 34445566677788
Q ss_pred HHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 355 IEEAYHIIRNM-------PTEPNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 355 ~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
+++|+..+.+. +..+....+..|..+--..-.. ....++.
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v-~e~~Ri~ 140 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEV-SEEKRIR 140 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccch-hHHHHHH
Confidence 88888888776 2234556666666554443334 4444443
No 447
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=45.38 E-value=3e+02 Score=26.85 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChHHHHHHHhhccC--CChhhH---HHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMRE--KNLQSW---TIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
.++.-|.+.++.++|..++..|.= .+...| +.+.+.+.+..--++....++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 466678888888888888877752 223333 3333444444333444444444443
No 448
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=45.30 E-value=54 Score=29.04 Aligned_cols=78 Identities=6% Similarity=-0.094 Sum_probs=51.2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 335 IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-E-PNAVILRS-FLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~-l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
+.-|+..|...+.--.+.+.+.+.-.++.++.. + .++..|-. --.-+...+++ +.+..+|.+.++++|++|..|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani-~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI-ESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccH-HHHHHHHHhhhccCCCCchHHHH
Confidence 444566666666555556666777777766532 3 34555532 22345678888 99999999999999999887765
Q ss_pred HH
Q 012504 412 AA 413 (462)
Q Consensus 412 l~ 413 (462)
..
T Consensus 182 yf 183 (435)
T COG5191 182 YF 183 (435)
T ss_pred HH
Confidence 43
No 449
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.70 E-value=1.4e+02 Score=27.95 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccC-----------CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 240 GTALVEMYSKCGHVEKAFKVFNLMRE-----------KNLQSWTIMISGLADNGRGNYAISLFAKMI 295 (462)
Q Consensus 240 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 295 (462)
.-.|++.++-.|++..|+++++.+.- -.+.++--+.-+|.-.+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888877651 123456667788888888888888887764
No 450
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.63 E-value=1.4e+02 Score=29.69 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=28.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhccCcH
Q 012504 273 IMISGLADNGRGNYAISLFAKMIQT--GLKPDSISFSAILSACSHLGLV 319 (462)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~ 319 (462)
++..+|..+|++..+.++++..... |-+.-...|+..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5667777777777777777766654 2222234566666666666654
No 451
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=44.33 E-value=43 Score=31.50 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=71.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhc
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISF-SAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRA 352 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 352 (462)
+..+...+.++.|..++.+.++. .||...| ..=..++.+.+++..|..=...+.+. .|+ ...|..-..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 45566778999999999999985 6765544 33337788999999998887777753 354 34444445566667
Q ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 012504 353 GLIEEAYHIIRNMPT-EPNAVILRSFLGACR 382 (462)
Q Consensus 353 ~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~ 382 (462)
+.+.+|...|+.... .|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 778888888877643 577666666665553
No 452
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=44.28 E-value=2.6e+02 Score=26.34 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=55.3
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH--------HHhcCCHHHHHHHHHhCC
Q 012504 295 IQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM--------LGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 295 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~ 366 (462)
..+.+.||.++.+.+...++.....+-...+|+-..+ +-.|-...+..++-. -.+...-++++++++.|+
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~q--qaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp 252 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQ--QADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMP 252 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCc
Confidence 3445889998888888777777777888888888776 344544444433321 124556788999999986
Q ss_pred CC---CCHHHHHHHHHHHH
Q 012504 367 TE---PNAVILRSFLGACR 382 (462)
Q Consensus 367 ~~---~~~~~~~~l~~~~~ 382 (462)
.. .|+.-+..|..-|+
T Consensus 253 ~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 253 AQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hhcccccchhHHHHHHHHh
Confidence 53 34445555554443
No 453
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.20 E-value=2.2e+02 Score=24.86 Aligned_cols=270 Identities=11% Similarity=0.063 Sum_probs=134.3
Q ss_pred CCcccHHHHHHH-HHhCCCchhHHHHHHHHHHCCCC---CCcchHHHHHHHhhhhcCchhHHHHHHHHHHh---CCC--C
Q 012504 64 PPLFAYNTLIRA-YAKTSCSIESIKLFDEMLKTGLR---PDNFTYPFVVKACGRCLLIGIGGSVHSLIFKV---GLD--S 134 (462)
Q Consensus 64 ~~~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~--~ 134 (462)
||+..=|.--.. -.+..++++|+.-|.+.++.... ...-....++....+.+++++....+.+++.. .+. -
T Consensus 24 pdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy 103 (440)
T KOG1464|consen 24 PDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY 103 (440)
T ss_pred CCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc
Confidence 666653322111 13345788888888887764221 12234556677778888888888888777532 121 2
Q ss_pred ccchHhHHHHHHHhcCChhHHHHHHhcCC-----CCChh----hHHHHHHHHHcCCChhHHHHHHHHhHHCCC----CCC
Q 012504 135 DKYIGNTLLRMYAACKEIDVAKAVFEEMP-----VRDVV----SWSSMIAGFVACDSPSDALKVFHRMKLANE----SPN 201 (462)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~ 201 (462)
+....|.+++.-..+.+.+--..+++.-. .++.. +-..|...|...+.+.+..++++++.+.-. ..|
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 33455667766665555554444443322 11222 224466667777777777777776644310 111
Q ss_pred -------HHHHHHHHHHHhcccchHhHHHHHHHHHHhC-CCchHhHHHHH----HHHHHhcCChHHHHH-HHhhccC---
Q 012504 202 -------SVTLVSLVSACTSLINVRAGESIHSYAVVNG-LELDVALGTAL----VEMYSKCGHVEKAFK-VFNLMRE--- 265 (462)
Q Consensus 202 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l----~~~~~~~~~~~~a~~-~~~~~~~--- 265 (462)
...|..=+..|....+-.....++++..... -.|.+.....+ .....+.|++++|.. +|+....
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 1245555566666666666666776655432 12333222211 223445666766643 3333321
Q ss_pred CCh------hhHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC
Q 012504 266 KNL------QSWTIMISGLADNGRGNYAISLFAKMIQTG--LKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP 337 (462)
Q Consensus 266 ~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 337 (462)
.+. .-|..+...+.++|=- -|+.-..+. -.|.....+.++.+|.. ++..+.++++..-.. .+..
T Consensus 264 sGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~--~IM~ 335 (440)
T KOG1464|consen 264 SGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS--NIMD 335 (440)
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc--cccc
Confidence 111 1244444444444310 011001111 13444566677777644 556666666655433 4444
Q ss_pred chhH
Q 012504 338 TMEH 341 (462)
Q Consensus 338 ~~~~ 341 (462)
|+..
T Consensus 336 DpFI 339 (440)
T KOG1464|consen 336 DPFI 339 (440)
T ss_pred cHHH
Confidence 4433
No 454
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.33 E-value=38 Score=28.53 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=39.6
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
..+.++.+.+.+++.+... +.| ....|-.+...-.++|+++.|.+.|++..
T Consensus 5 ~~~~~D~~aaaely~qal~---lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 5 LAESGDAEAAAELYNQALE---LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hcccCChHHHHHHHHHHhh---cCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 4567888888888888874 444 46778888888888999999988888764
No 455
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=43.20 E-value=3.1e+02 Score=26.41 Aligned_cols=236 Identities=9% Similarity=0.024 Sum_probs=124.5
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHHhccc------chHhHHHHHHHHHHhC-CC-chHhHHHHHHHHHHhcCChHH-H
Q 012504 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLI------NVRAGESIHSYAVVNG-LE-LDVALGTALVEMYSKCGHVEK-A 256 (462)
Q Consensus 186 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~-a 256 (462)
...+|+...+. -|+...+...|..|...- .......+++...+.+ .. .....|..+.-.++..+...+ |
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 33455554442 345555555555543221 2333344444443332 22 234455555555555554333 3
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHhhccCc-HH--HHHHHHHHHHH
Q 012504 257 FKVFNLMREKNLQSWTIMISGLADN-GRGNYA-ISLFAKMIQTGLKPDSISFSAILSACSHLGL-VD--EGKNYFDEMAR 331 (462)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~--~a~~~~~~~~~ 331 (462)
..+-.+....+...|-.-++..... .+++-- .++|......-..+-...++... .++ .. .-..++..+..
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 3444344555555555555444422 122221 22233333322222333333333 111 11 11122333333
Q ss_pred hcCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 332 VYNIKPTM-EHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGAC--RNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 332 ~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~--~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
-..|+. ..-+.+++.+.+.|-..+|...+..... +|+...|..++..- ...-+. ..+..+++.+......++
T Consensus 454 --~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l-~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 454 --VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNL-ANIREYYDRALREFGADS 530 (568)
T ss_pred --hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCc-hHHHHHHHHHHHHhCCCh
Confidence 223443 3345677888899999999999988744 56778888887642 223336 788899999887655888
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
..|......-...|+.+.+-.++.+
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHH
Confidence 8888887777788888877766543
No 456
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=42.76 E-value=2.8e+02 Score=25.73 Aligned_cols=87 Identities=9% Similarity=0.090 Sum_probs=50.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH------------HHHHhhccCcHHHHHHHHHHHHHhcCCCCc--
Q 012504 273 IMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSA------------ILSACSHLGLVDEGKNYFDEMARVYNIKPT-- 338 (462)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 338 (462)
.+...+-..|+.++|..++.+.. ..||.. =++.|...+++-.|.-+-+++...+--.|+
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~ 208 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQ 208 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHH
Confidence 34455556666666666554432 112221 134456667777777666666655333444
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 339 ---MEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 339 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
...|+.+++.....+.+=.+.+.|+.+-
T Consensus 209 ~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy 239 (439)
T KOG1498|consen 209 ELKLKYYELMIRLGLHDRAYLNVCRSYRAIY 239 (439)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 3456677777767777777777777663
No 457
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=42.32 E-value=1e+02 Score=21.62 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCC
Q 012504 19 LHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSC 81 (462)
Q Consensus 19 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~ 81 (462)
...|++.+.+.|+- +..-+..+- +...+.+.+.++++.+|. ....+|..+..++-..|.
T Consensus 22 ~~~v~~~L~~~gvl-t~~~~~~I~--~~~t~~~k~~~Lld~L~~-RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDIL-TDSMAESIM--AKPTSFSQNVALLNLLPK-RGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHH--cCCCcHHHHHHHHHHHHH-hChhHHHHHHHHHHhcCh
Confidence 34578888888754 333344444 433477888888888877 667778888888765554
No 458
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.11 E-value=2.1e+02 Score=24.08 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 012504 345 MVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~ 365 (462)
+.....+.|+.++|.+.|.++
T Consensus 171 igeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 334444555555555555554
No 459
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.49 E-value=1.2e+02 Score=21.06 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHH
Q 012504 87 KLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIF 128 (462)
Q Consensus 87 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (462)
++|+-....|+..|+..|..++..+.-.=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 666666666777677777666665544444555555555544
No 460
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=41.36 E-value=2.6e+02 Score=24.87 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMREKN---LQSWTIMISGLADNGRGNYAISLFAKMIQ-----TGLKPDSIS 305 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 305 (462)
+++.....|..+|.+.+|.++-++...-| ...|-.+++.+...|+--.+.+.++++.+ -|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 44556778899999999999999888644 46788899999999998888888887754 255554433
No 461
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.11 E-value=1.6e+02 Score=22.28 Aligned_cols=43 Identities=7% Similarity=0.164 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHH
Q 012504 286 YAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDE 328 (462)
Q Consensus 286 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 328 (462)
.+.++|..|..+|+--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666654433 33455555555666666666666654
No 462
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.10 E-value=2.6e+02 Score=24.94 Aligned_cols=216 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcChhHH-HHHHHHHHHhCCCCchhhhhhHh--hhhhcC-CHHHHHHHhccCCCCCCcccHHHHHHHHHhC
Q 012504 4 RHIETLIQLSKTVHHL-HQLHTLFLKTSLDHNTCIISRFI--LTSLSI-SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKT 79 (462)
Q Consensus 4 ~~~~~~l~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~-~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~ 79 (462)
+.+..+|......+.- ..++..+.-.+-.|+..+++.|+ -.-.-| ...-|.++|+.. ......+.+++.+-+-
T Consensus 133 ~k~Llflk~F~e~Er~KLA~~Tal~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~---~~Ek~i~~lis~Lrkg 209 (412)
T KOG2297|consen 133 RKFLLFLKLFEENERKKLAMLTALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEW---LVEKDINDLISSLRKG 209 (412)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHH---HhhccHHHHHHHHHhc
Q ss_pred CCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhc--------------------------------CchhHHHHHHHH
Q 012504 80 SCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCL--------------------------------LIGIGGSVHSLI 127 (462)
Q Consensus 80 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--------------------------------~~~~a~~~~~~~ 127 (462)
+--+.-.++| +|+..+-......+...| .+++......+-
T Consensus 210 ~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee 281 (412)
T KOG2297|consen 210 KMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEE 281 (412)
T ss_pred ChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q ss_pred HHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChh---------------HHHHHHHH
Q 012504 128 FKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPS---------------DALKVFHR 192 (462)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~a~~~~~~ 192 (462)
.+..--|++.+...+=++......|.+-.++..+-.-+..-.|..|+.+++..|+.+ .-.+.|.+
T Consensus 282 ~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqk 361 (412)
T KOG2297|consen 282 MKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQK 361 (412)
T ss_pred HHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred hHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHH
Q 012504 193 MKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVV 230 (462)
Q Consensus 193 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 230 (462)
+...=.+.++-.=..++.-|-.......-...+++|.+
T Consensus 362 iV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 362 IVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHH
No 463
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=41.07 E-value=1.8e+02 Score=28.09 Aligned_cols=55 Identities=5% Similarity=-0.002 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
..|-.++.-|...+++++|.++-.-... ...|.++.....+..+..-++..|..+
T Consensus 574 ~py~~iL~e~~sssKWeqavRLCrfv~e-------qTMWAtlAa~Av~~~~m~~~EiAYaA~ 628 (737)
T KOG1524|consen 574 NPYPEILHEYLSSSKWEQAVRLCRFVQE-------QTMWATLAAVAVRKHQMQISEIAYAAA 628 (737)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhccc-------hHHHHHHHHHHHhhccccHHHHHHHHh
Confidence 3455555556666666666665544432 235555555555555554444444444
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.99 E-value=1.4e+02 Score=23.90 Aligned_cols=37 Identities=3% Similarity=-0.102 Sum_probs=16.5
Q ss_pred cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 216 INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
++.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3344455555555555444443333334444444443
No 465
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.98 E-value=94 Score=22.64 Aligned_cols=20 Identities=5% Similarity=0.350 Sum_probs=8.9
Q ss_pred HHHHHcCCChhHHHHHHHHh
Q 012504 174 IAGFVACDSPSDALKVFHRM 193 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m 193 (462)
+..|...++.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555544443
No 466
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.96 E-value=2.7e+02 Score=26.98 Aligned_cols=111 Identities=12% Similarity=0.004 Sum_probs=54.4
Q ss_pred HHHHHHhhcCh-------hHHHHHHHH-HHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCC-CCCcccHHHHHHHH
Q 012504 6 IETLIQLSKTV-------HHLHQLHTL-FLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPV-TPPLFAYNTLIRAY 76 (462)
Q Consensus 6 ~~~~l~~~~~~-------~~a~~~~~~-~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~-~~~~~~y~~li~~~ 76 (462)
..++++.|..+ +...+.+.. +.+.|+..+......+. ....|++..|+.++++.-. .....++..+.
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia-~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~--- 240 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA-KKGDGSVRDMLSFMEQAIVFTDSKLTGVKIR--- 240 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHcCChHHHHHHHHHHHHHhCCCCcCHHHHH---
Confidence 35566666421 222333333 33456766666665555 1223477777777766321 01112222221
Q ss_pred HhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccc
Q 012504 77 AKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKY 137 (462)
Q Consensus 77 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 137 (462)
++. |.. +...+..++.++...+....+..+++.+...|..|...
T Consensus 241 --------------~~l--g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 241 --------------KMI--GYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred --------------HHh--CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 111 322 44444445554444444457777777777777665543
No 467
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.82 E-value=1.7e+02 Score=27.59 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.+++.-+..+.+.+++ ..|-.+.++++++.|... ..++|.+++....
T Consensus 301 LaLr~AM~~~~K~KNf-~tAa~FArRLLel~p~~~--------------~a~qArKil~~~e 347 (422)
T PF06957_consen 301 LALRSAMSQAFKLKNF-ITAASFARRLLELNPSPE--------------VAEQARKILQACE 347 (422)
T ss_dssp HHHHHHHHHCCCTTBH-HHHHHHHHHHHCT--SCH--------------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccH-HHHHHHHHHHHHcCCCHH--------------HHHHHHHHHHHHh
Confidence 3556667778899999 999999999999988643 2245667666554
No 468
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.81 E-value=2.2e+02 Score=28.44 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=43.9
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhC--CCCccchHhHHHHHHHhcCChh------HHHHHHhcCC-CCChhhHHHHHHH
Q 012504 106 FVVKACGRCLLIGIGGSVHSLIFKVG--LDSDKYIGNTLLRMYAACKEID------VAKAVFEEMP-VRDVVSWSSMIAG 176 (462)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~-~~~~~~~~~l~~~ 176 (462)
+++.+|...|++-++.++++.....+ -+.=...+|..++...+.|.++ .|.+.++... .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 77788888888888888887776553 1222345666677777777653 3333333332 2355566666554
Q ss_pred HHc
Q 012504 177 FVA 179 (462)
Q Consensus 177 ~~~ 179 (462)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 433
No 469
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.55 E-value=2.3e+02 Score=24.09 Aligned_cols=167 Identities=11% Similarity=-0.070 Sum_probs=0.0
Q ss_pred hHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHH--HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 012504 253 VEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAI--SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMA 330 (462)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 330 (462)
..+..++++.+..++.......--.|--.-+.+... ....+....-.-|....-..-.-.+...+++++|...+..-
T Consensus 26 ~~~L~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~p- 104 (226)
T PF13934_consen 26 DNDLRALLDLILSSNVSLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELLSHP- 104 (226)
T ss_pred HHHHHHHHHHHhcCCcCHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHhCCC-
Q ss_pred HhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 331 RVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
.+.|+.... ++.++...|+.+.|+.+++..+.......-..+......++.. .+|..+-+...+ +.....+.
T Consensus 105 ---s~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~~v-~EAf~~~R~~~~--~~~~~l~e 176 (226)
T PF13934_consen 105 ---SLIPWFPDK--ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALANGLV-TEAFSFQRSYPD--ELRRRLFE 176 (226)
T ss_pred ---CCCcccHHH--HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCH-HHHHHHHHhCch--hhhHHHHH
Q ss_pred HHHHHHh----hcCCHHHHHHH
Q 012504 411 LAASVSS----LSGNWDTAAEL 428 (462)
Q Consensus 411 ~l~~~~~----~~g~~~~A~~~ 428 (462)
.+...+. +.+..++-+.+
T Consensus 177 ~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 177 QLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHhhhhhHHHHHHhC
No 470
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.29 E-value=83 Score=23.08 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=25.8
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcC
Q 012504 72 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLL 116 (462)
Q Consensus 72 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 116 (462)
++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 445555555566677777777666655555555445555544443
No 471
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=38.62 E-value=76 Score=17.97 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=22.0
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.+|..|+.+-...+++++|..=|++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 467888888888999999888777654
No 472
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=38.27 E-value=96 Score=24.68 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHhCCCC
Q 012504 17 HHLHQLHTLFLKTSLDH 33 (462)
Q Consensus 17 ~~a~~~~~~~~~~g~~~ 33 (462)
..+..+++-+...|.+|
T Consensus 52 ~H~~k~~~yl~~~g~~~ 68 (167)
T COG1528 52 THAMKLFNYLNERGARP 68 (167)
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 44455555555555443
No 473
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.08 E-value=2.6e+02 Score=23.98 Aligned_cols=132 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHH
Q 012504 68 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYA 147 (462)
Q Consensus 68 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (462)
+...-+..|...-++.-|-...++..+ +..-...+--|.+..+.+--..+.+-....++.-+..-..+++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE------PIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE------PIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh------hHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Q ss_pred hcCChhHHHHHHhcCC----------------CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 012504 148 ACKEIDVAKAVFEEMP----------------VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL 208 (462)
Q Consensus 148 ~~~~~~~A~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 208 (462)
..||..+|+..++.-. +|.+.....++..|. .+++++|.+++.++-+.|..|....-+..
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 474
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.47 E-value=3.2e+02 Score=28.52 Aligned_cols=132 Identities=16% Similarity=0.137 Sum_probs=81.6
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHH
Q 012504 143 LRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGE 222 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 222 (462)
...+..+|+++.|++.-..+. +..+|..|.......|+.+-|...|++.+. |..|--.|.-.|+.++-.
T Consensus 650 F~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 345567888888888777665 456788899888899999998888887664 233333455667777766
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 223 SIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
++.+.....+ .......++ .-.|+.++-.+++...-.-+..-.. -..+|.-++|.++.++...
T Consensus 719 Km~~iae~r~-D~~~~~qna-----lYl~dv~ervkIl~n~g~~~laylt-----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIRN-DATGQFQNA-----LYLGDVKERVKILENGGQLPLAYLT-----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhhh-hhHHHHHHH-----HHhccHHHHHHHHHhcCcccHHHHH-----HhhcCcHHHHHHHHHhhcc
Confidence 6655554432 111111111 2236777777776665443332111 1345777788888777765
No 475
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=37.23 E-value=78 Score=21.19 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=25.3
Q ss_pred HhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhh
Q 012504 77 AKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRC 114 (462)
Q Consensus 77 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 114 (462)
...|+.+.+.+++++....|..|.......+..+..+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34788888888888888877776665555555554443
No 476
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.20 E-value=3.2e+02 Score=24.73 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccCC--------ChhhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMREK--------NLQSWTI-MISGLADNGRGNYAISLFAKMIQTGLKPDSI--- 304 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--- 304 (462)
...+.....-|++.|+-+.|.+.+.+..++ |+..+.. +.-.|....-..+-++..+.+.+.|...+..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 345566777888889988888888776543 2222222 2223333334455555666667777655432
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 305 -SFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 305 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
+|-.+- |....++.+|-.+|-+....
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 444332 34556888888888777653
No 477
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.01 E-value=2.3e+02 Score=23.13 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=15.3
Q ss_pred HHhhccCcHHHHHHHHHHHHH
Q 012504 311 SACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~ 331 (462)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 357777788888887777764
No 478
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.77 E-value=4.3e+02 Score=26.10 Aligned_cols=92 Identities=8% Similarity=0.017 Sum_probs=56.3
Q ss_pred HHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHh-cccchHhHHHHHHHHHHhC---CCchHhHHHHHHHHHHh
Q 012504 174 IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACT-SLINVRAGESIHSYAVVNG---LELDVALGTALVEMYSK 249 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 249 (462)
+....+.|-+.-|+++.+.+.+....-|+.....+|+.|+ +..++.-.+++++.....+ .-|+...-.+|...|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3456677888888888888877654446777777777765 5566777777776665432 23444444455555555
Q ss_pred cCC---hHHHHHHHhhccC
Q 012504 250 CGH---VEKAFKVFNLMRE 265 (462)
Q Consensus 250 ~~~---~~~a~~~~~~~~~ 265 (462)
... -+.|...+.+..+
T Consensus 429 ~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALK 447 (665)
T ss_pred cCChhhHHHHHHHHHHHHH
Confidence 444 2344444444433
No 479
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=36.53 E-value=13 Score=31.26 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=54.0
Q ss_pred CchhHHHHHHHhhcCh----------hHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcC----CHHHHHHHhccCCCCCC
Q 012504 1 MISRHIETLIQLSKTV----------HHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSI----SLHFTRSLFNNLPVTPP 65 (462)
Q Consensus 1 ~~~~~~~~~l~~~~~~----------~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~----~~~~A~~~~~~~~~~~~ 65 (462)
++++.|..++..|+.+ ++..+.+..+.+.|+..++.+|..=- .+..|| ..--.+.+|...+. -+
T Consensus 87 tin~aF~~Vi~~Ca~~~~~~~~TWI~~e~~~aY~~LH~~G~AHSVE~W~~~~LvGGlYGv~iG~~F~GESMFs~~~n-AS 165 (233)
T PRK00301 87 TVDTAFAAVIRACAAPRPGQEGTWITPEIIEAYLELHELGHAHSVEVWQGGELVGGLYGVALGRAFFGESMFSRATD-AS 165 (233)
T ss_pred EEcccHHHHHHHHccCCCCCCCCCCCHHHHHHHHHHHHcCceEEEEEEECCEEEeeeeccccCCEEeecccccCCCC-hH
Confidence 3688999999999753 57799999999999999999985432 344555 44445566666654 44
Q ss_pred cccHHHHHHHHHhCC
Q 012504 66 LFAYNTLIRAYAKTS 80 (462)
Q Consensus 66 ~~~y~~li~~~~~~g 80 (462)
-.++-.|...+...|
T Consensus 166 KvAl~~L~~~L~~~g 180 (233)
T PRK00301 166 KVALAALVEHLRRHG 180 (233)
T ss_pred HHHHHHHHHHHHHCC
Confidence 445555555544433
No 480
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.48 E-value=5.4e+02 Score=27.18 Aligned_cols=162 Identities=12% Similarity=0.186 Sum_probs=83.8
Q ss_pred CCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHH
Q 012504 30 SLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVV 108 (462)
Q Consensus 30 g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 108 (462)
-+.-|+..-..++ .-.....+++...++++.+. |..|+..|...|+.++|+++|.+.....-.-|.. ..
T Consensus 473 Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~------y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-~~--- 542 (877)
T KOG2063|consen 473 YLETNPGLVGPLLRLENNHCDVEEIETVLKKSKK------YRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-QL--- 542 (877)
T ss_pred HHhcCchhhhhhhhccCCCcchHHHHHHHHhccc------HHHHHHHHHhccchHHHHHHHHHHhccccccccc-hh---
Confidence 3344444445555 11112267777777766654 8999999999999999999999987631000110 00
Q ss_pred HHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHH
Q 012504 109 KACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--RDVVSWSSMIAGFVACDSPSDA 186 (462)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 186 (462)
+.-..+.+-+.+.+ .++....-.. ..+.-..+.+...++|..-.. .....-. .+-.|......+-+
T Consensus 543 ---------~~~e~ii~YL~~l~-~~~~~Li~~y-~~wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~ 610 (877)
T KOG2063|consen 543 ---------DGLEKIIEYLKKLG-AENLDLILEY-ADWVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLL 610 (877)
T ss_pred ---------hhHHHHHHHHHHhc-ccchhHHHHH-hhhhhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchh
Confidence 01111222222222 2211110000 112234555566666655111 0111111 22245667778888
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHHh
Q 012504 187 LKVFHRMKLANESPNSVTLVSLVSACT 213 (462)
Q Consensus 187 ~~~~~~m~~~~~~p~~~~~~~l~~~~~ 213 (462)
..+++.+....-.++..-.+.++..|+
T Consensus 611 I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 611 IPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHHHHHHhHhccccchHHHHHHHHHHH
Confidence 888888876655556666666666554
No 481
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.44 E-value=3.6e+02 Score=25.21 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=12.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHH
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
.+.+++.|...+.++.|.++....
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcc
Confidence 444555555555555555554443
No 482
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.83 E-value=1.2e+02 Score=19.65 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=24.0
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
+....++.++..++...-.++++..+.++...|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3344455555555555556666666666665553 23444444444333
No 483
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.56 E-value=2.1e+02 Score=22.22 Aligned_cols=60 Identities=8% Similarity=0.004 Sum_probs=33.3
Q ss_pred HHHCCCCCCcchHHHHHHHhhhh-cCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 92 MLKTGLRPDNFTYPFVVKACGRC-LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 92 m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445566544433 2444444443 45667777777777776555555544445555555544
No 484
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=35.25 E-value=3.5e+02 Score=24.65 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=12.1
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 012504 276 SGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+.....++.+++..++.....
T Consensus 12 ~~~~~~~~~~~~~~il~~vl~ 32 (411)
T KOG1463|consen 12 QNLVSVNQVEEAINILKSVLN 32 (411)
T ss_pred HHhcccchhhhhHHHHHHHhh
Confidence 334445556666666666655
No 485
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.35 E-value=4.3e+02 Score=25.48 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=46.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh---cCCCccCCccceEEE
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN---QKGLNKVPGCSWVKV 448 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~~ 448 (462)
-++++....+. ..+.+-.+.+.....+.+.....-...+...|++..|.+++...- ..|...+|.++.-.+
T Consensus 212 kVr~llq~~~L-k~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif 285 (696)
T KOG2471|consen 212 KVRFLLQTRNL-KLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIF 285 (696)
T ss_pred hHHHHHHHHHH-HHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhee
Confidence 34556666666 666666666655555666666667888889999999999886432 334444555544444
No 486
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.59 E-value=85 Score=23.29 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhh
Q 012504 71 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR 113 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 113 (462)
.++..+...+.+-.|.++++.+.+.|...+..|.=..+..+..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 3444455555555666666666655555444443333333333
No 487
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=33.55 E-value=1.2e+02 Score=27.05 Aligned_cols=69 Identities=9% Similarity=-0.063 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHH-HHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 369 PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL-AASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.|+..|...+.-..+.|.+ .....++.++.+.+|.+.+.|.. -..-+...++++.+..++..-.+.+.+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y-~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMY-GEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred CCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4566666665545566667 99999999999999999988876 444566789999999998876665543
No 488
>PRK10304 ferritin; Provisional
Probab=33.45 E-value=82 Score=25.16 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHhCCCC
Q 012504 17 HHLHQLHTLFLKTSLDH 33 (462)
Q Consensus 17 ~~a~~~~~~~~~~g~~~ 33 (462)
+.|.++++.+...|..|
T Consensus 52 ~HA~kl~~~i~~rgg~~ 68 (165)
T PRK10304 52 THMQRLFDYLTDTGNLP 68 (165)
T ss_pred HHHHHHHHHHHHcCCCe
Confidence 33444444444444433
No 489
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.21 E-value=2.6e+02 Score=24.14 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555555554
No 490
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=33.20 E-value=1.3e+02 Score=22.01 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=24.3
Q ss_pred HHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 012504 173 MIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI 216 (462)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 216 (462)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33444444555566666666666655555555555555554444
No 491
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.65 E-value=4.2e+02 Score=24.82 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMRE------KNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
.+.-+.+.|..+|+++.|++.|.+..+ .-+..|-.+|..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455667777777777777777777542 1123455555555566666666666666554
No 492
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.62 E-value=4.2e+02 Score=24.75 Aligned_cols=55 Identities=4% Similarity=-0.037 Sum_probs=35.5
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHH--HHHHHHHHHh--cccchHhHHHHHHHHHHh
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSV--TLVSLVSACT--SLINVRAGESIHSYAVVN 231 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 231 (462)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788899999999888876 555554 3334444443 345667777777766654
No 493
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.35 E-value=3.9e+02 Score=26.13 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCC--Chhh---HHHHHHHHHcCCChhHHHHHHHHhHH
Q 012504 140 NTLLRMYAACKEIDVAKAVFEEMPVR--DVVS---WSSMIAGFVACDSPSDALKVFHRMKL 195 (462)
Q Consensus 140 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~ 195 (462)
..++.-|.+.+++++|..++..|.-. .... .+.+.+.+.+..--++-...++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45777899999999999999888732 2222 33344444555434444444444443
No 494
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.28 E-value=1.8e+02 Score=20.40 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=9.6
Q ss_pred hhccCcHHHHHHHHHHHHH
Q 012504 313 CSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~ 331 (462)
....|++++|...+++..+
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3344555555555555443
No 495
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.23 E-value=2.4e+02 Score=21.90 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=25.7
Q ss_pred HHHCCCCCCHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 294 MIQTGLKPDSISFSAILSACSH-LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 294 m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
+.+.|++++..-.. ++..+.. .+..-.|.++++.+.+. +...+..|...-++.+.+.|
T Consensus 8 l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCC
Confidence 34445554443222 2223332 23445666666666554 44444444333334444443
No 496
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.74 E-value=2.3e+02 Score=21.40 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhCCCch-HhHHHHHHHHHHhcCChHHHHHHHhh
Q 012504 220 AGESIHSYAVVNGLELD-VALGTALVEMYSKCGHVEKAFKVFNL 262 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 262 (462)
.+..+|..|...|+-.. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66677777777665443 44566666777777777777777754
No 497
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.38 E-value=3.3e+02 Score=23.14 Aligned_cols=61 Identities=18% Similarity=0.064 Sum_probs=27.7
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccC-----CChhhH--HHHHHHHHHcCChHHHHHHHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMRE-----KNLQSW--TIMISGLADNGRGNYAISLFAKMI 295 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~ 295 (462)
+...-++.|+--|.-...+.+|.+.|..-.. .+..++ ..-|......|+.++|++....+-
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 3333444444444444444445555543221 122222 223445566666666666655544
No 498
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=31.36 E-value=1.9e+02 Score=20.30 Aligned_cols=34 Identities=9% Similarity=0.285 Sum_probs=24.2
Q ss_pred cCChHHHHHHHhhccCCChhhHHHHHHHHHHcCC
Q 012504 250 CGHVEKAFKVFNLMREKNLQSWTIMISGLADNGR 283 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (462)
....+++.++++.+...++.+|..+..++...+.
T Consensus 47 ~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 47 PTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 3456777777887777788888777777765443
No 499
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.22 E-value=5.4e+02 Score=25.63 Aligned_cols=260 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCchhhhhhHhhhhhcC--CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHH
Q 012504 17 HHLHQLHTLFLKTSLDHNTCIISRFILTSLSI--SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 94 (462)
Q Consensus 17 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~--~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 94 (462)
+...++.+.....--.+....+..++ .... +.+.-..+++++.. .....+..++++....|-.....-+.+.+..
T Consensus 292 ~~l~~L~~~~~~~~~~~~~~~f~~lv--~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 292 EVLKHLVQDIASDVQEPAAAKFLRLV--RLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHH--HHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q ss_pred CCCCC-CcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCcc-------chHhHHHHHHHhcCCh------hHHHHHHh
Q 012504 95 TGLRP-DNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDK-------YIGNTLLRMYAACKEI------DVAKAVFE 160 (462)
Q Consensus 95 ~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~------~~A~~~~~ 160 (462)
..+.+ .....-..+-...+.-..+-...+++.+.....++.. ..+..++.-+|..... ++..+.+.
T Consensus 369 ~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~ 448 (574)
T smart00638 369 KKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLH 448 (574)
T ss_pred CCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q ss_pred cCC-----CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc--cchHhHHHHHHHHHHhCC
Q 012504 161 EMP-----VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSL--INVRAGESIHSYAVVNGL 233 (462)
Q Consensus 161 ~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~ 233 (462)
+.. ..|..--...+.+....|. ..++..+..........+...-...+.++.+. ...+.+..++-.+....-
T Consensus 449 ~~l~~~~~~~~~~~~~~~LkaLGN~g~-~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~ 527 (574)
T smart00638 449 ELLQQAVSKGDEEEIQLYLKALGNAGH-PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRA 527 (574)
T ss_pred HHHHHHHhcCCchheeeHHHhhhccCC-hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCC
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLAD 280 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 280 (462)
.+...=..+++.+....-.......+.+.+......-..+.+..+.+
T Consensus 528 e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 528 EPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhhC
No 500
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.77 E-value=40 Score=33.44 Aligned_cols=76 Identities=9% Similarity=-0.023 Sum_probs=25.4
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHH
Q 012504 50 LHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIF 128 (462)
Q Consensus 50 ~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (462)
......++.+.|. .+...-..+++.|.+.|-.+.|.++.+.+-.+-. ...-|...+..+.+.|+......+...+.
T Consensus 390 ~~~i~~lL~~~p~-~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPL-DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444455554 4444445555555555555555555554433211 12234444445555555555444444333
Done!