Query 012504
Match_columns 462
No_of_seqs 562 out of 2920
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 10:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.7E-38 5.8E-43 312.2 37.2 424 6-438 90-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.2E-35 1.1E-39 288.9 35.0 404 6-418 123-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-28 1.1E-32 225.8 38.1 366 47-420 12-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5E-28 1.7E-32 224.6 38.4 357 72-437 5-370 (388)
5 4g26_A Pentatricopeptide repea 100.0 7.2E-30 2.4E-34 241.1 19.2 211 84-316 8-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.1E-29 3.6E-34 240.0 19.0 185 66-250 26-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 7.9E-25 2.7E-29 210.8 32.5 386 45-438 17-481 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.7E-23 5.7E-28 198.1 33.2 345 64-437 24-412 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2.4E-23 8.4E-28 196.9 32.9 363 34-424 25-443 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.5E-23 5.1E-28 201.8 28.3 397 8-412 14-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 2.9E-22 1E-26 194.0 33.9 250 181-438 216-494 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 3.6E-20 1.2E-24 169.4 30.7 325 66-418 3-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 8.6E-20 2.9E-24 166.9 32.3 307 102-438 4-338 (359)
14 3fp2_A TPR repeat-containing p 99.9 7.3E-21 2.5E-25 184.1 24.4 391 9-410 34-500 (537)
15 1b89_A Protein (clathrin heavy 99.9 9.2E-21 3.1E-25 170.9 20.3 296 35-366 6-309 (449)
16 3hym_B Cell division cycle pro 99.9 1.4E-19 4.9E-24 163.5 27.4 280 139-422 25-321 (330)
17 3hym_B Cell division cycle pro 99.9 3.3E-19 1.1E-23 161.0 28.4 267 165-437 20-301 (330)
18 2xm6_A Protein corresponding t 99.8 2E-17 6.9E-22 157.9 37.2 351 64-436 37-433 (490)
19 1fch_A Peroxisomal targeting s 99.8 2.7E-19 9.1E-24 164.4 23.1 280 147-431 36-355 (368)
20 2xm6_A Protein corresponding t 99.8 9.6E-18 3.3E-22 160.1 34.6 352 47-418 56-452 (490)
21 3mkr_A Coatomer subunit epsilo 99.8 1.4E-17 4.7E-22 147.0 29.6 272 144-429 7-288 (291)
22 4g1t_A Interferon-induced prot 99.8 1.2E-17 4.1E-22 158.9 31.1 369 64-446 49-470 (472)
23 4eqf_A PEX5-related protein; a 99.8 6.2E-19 2.1E-23 161.8 21.3 261 166-431 64-352 (365)
24 2ooe_A Cleavage stimulation fa 99.8 2.4E-16 8.2E-21 152.0 37.5 395 34-437 12-494 (530)
25 1fch_A Peroxisomal targeting s 99.8 8.1E-18 2.8E-22 154.5 23.0 258 103-363 66-354 (368)
26 3cv0_A Peroxisome targeting si 99.8 3.1E-18 1.1E-22 154.4 19.5 260 168-433 22-313 (327)
27 1b89_A Protein (clathrin heavy 99.8 8.9E-19 3E-23 158.1 12.6 281 113-428 15-304 (449)
28 3mkr_A Coatomer subunit epsilo 99.8 3.5E-17 1.2E-21 144.5 22.2 248 175-438 7-267 (291)
29 2ooe_A Cleavage stimulation fa 99.8 6.2E-16 2.1E-20 149.1 32.9 366 64-437 11-456 (530)
30 4eqf_A PEX5-related protein; a 99.8 5.7E-17 1.9E-21 148.7 24.3 255 106-364 70-352 (365)
31 1xi4_A Clathrin heavy chain; a 99.8 5.9E-15 2E-19 148.5 37.8 374 9-429 994-1378(1630)
32 3cv0_A Peroxisome targeting si 99.8 3.3E-16 1.1E-20 141.0 26.0 264 65-365 20-312 (327)
33 1xi4_A Clathrin heavy chain; a 99.7 2.1E-13 7E-18 137.5 41.8 341 4-385 1053-1415(1630)
34 3uq3_A Heat shock protein STI1 99.7 1.1E-15 3.8E-20 132.6 22.2 219 204-436 7-237 (258)
35 4g1t_A Interferon-induced prot 99.7 1E-14 3.4E-19 138.6 28.3 366 32-413 48-471 (472)
36 2pl2_A Hypothetical conserved 99.7 1.3E-15 4.4E-20 128.4 19.5 196 234-433 2-212 (217)
37 3uq3_A Heat shock protein STI1 99.7 9E-16 3.1E-20 133.1 18.7 237 168-415 6-256 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.9E-15 2E-19 129.4 22.6 242 178-429 16-269 (275)
39 3spa_A Mtrpol, DNA-directed RN 99.7 6.9E-17 2.3E-21 157.5 10.0 119 234-353 124-250 (1134)
40 3spa_A Mtrpol, DNA-directed RN 99.7 3.1E-17 1.1E-21 159.8 7.1 121 136-256 127-255 (1134)
41 3e4b_A ALGK; tetratricopeptide 99.7 8.3E-14 2.8E-18 130.9 28.7 372 6-433 9-419 (452)
42 3e4b_A ALGK; tetratricopeptide 99.7 3.8E-14 1.3E-18 133.3 24.9 345 71-438 8-390 (452)
43 3u4t_A TPR repeat-containing p 99.6 1.3E-14 4.3E-19 127.0 19.9 244 171-419 7-268 (272)
44 1ouv_A Conserved hypothetical 99.6 1E-13 3.6E-18 121.3 25.4 224 166-436 5-252 (273)
45 2pl2_A Hypothetical conserved 99.6 2.9E-14 9.8E-19 120.1 20.6 195 166-366 4-212 (217)
46 1ouv_A Conserved hypothetical 99.6 2.6E-13 8.9E-18 118.8 25.5 229 135-405 5-255 (273)
47 3u4t_A TPR repeat-containing p 99.6 4E-14 1.4E-18 123.8 19.8 232 203-439 4-254 (272)
48 2ho1_A Type 4 fimbrial biogene 99.6 2.1E-13 7.2E-18 117.8 24.1 133 271-406 108-243 (252)
49 2vq2_A PILW, putative fimbrial 99.6 1.3E-13 4.4E-18 116.7 21.9 197 237-436 8-212 (225)
50 2ho1_A Type 4 fimbrial biogene 99.6 8.6E-14 2.9E-18 120.2 21.1 199 237-438 37-241 (252)
51 2q7f_A YRRB protein; TPR, prot 99.6 2E-14 6.8E-19 123.4 16.9 201 207-412 28-233 (243)
52 2vq2_A PILW, putative fimbrial 99.6 2.4E-13 8.1E-18 115.1 23.3 204 203-410 9-220 (225)
53 2h6f_A Protein farnesyltransfe 99.6 9.8E-14 3.3E-18 126.5 21.6 247 166-418 96-365 (382)
54 2q7f_A YRRB protein; TPR, prot 99.6 2.2E-14 7.5E-19 123.2 16.4 200 235-438 21-225 (243)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.8E-14 2E-18 123.0 19.2 240 78-326 17-269 (275)
56 4a1s_A PINS, partner of inscut 99.6 3.1E-14 1.1E-18 132.6 18.1 263 170-434 51-371 (411)
57 2h6f_A Protein farnesyltransfe 99.6 8.2E-14 2.8E-18 127.1 19.7 230 202-437 97-350 (382)
58 3sf4_A G-protein-signaling mod 99.6 4.8E-14 1.7E-18 130.9 18.4 287 137-424 10-365 (406)
59 3ro2_A PINS homolog, G-protein 99.6 8.3E-14 2.8E-18 125.6 18.7 265 170-436 8-333 (338)
60 3vtx_A MAMA; tetratricopeptide 99.6 2.1E-13 7.2E-18 111.6 18.2 167 267-437 4-172 (184)
61 3sf4_A G-protein-signaling mod 99.5 3.1E-13 1.1E-17 125.5 18.1 296 65-387 8-363 (406)
62 4abn_A Tetratricopeptide repea 99.5 1.7E-13 6E-18 129.6 16.5 208 218-431 84-317 (474)
63 4a1s_A PINS, partner of inscut 99.5 5.4E-13 1.9E-17 124.2 17.2 98 305-403 265-374 (411)
64 3nf1_A KLC 1, kinesin light ch 99.5 1.1E-13 3.8E-18 123.5 11.5 232 167-434 27-306 (311)
65 3ro2_A PINS homolog, G-protein 99.5 1.4E-12 4.8E-17 117.5 18.3 98 305-403 225-334 (338)
66 3ulq_A Response regulator aspa 99.5 1.7E-12 5.9E-17 119.6 19.1 193 239-433 145-366 (383)
67 2ond_A Cleavage stimulation fa 99.5 2.7E-11 9.3E-16 107.8 25.1 220 184-408 33-277 (308)
68 3ulq_A Response regulator aspa 99.5 6.7E-12 2.3E-16 115.6 21.4 229 173-402 109-369 (383)
69 4e6h_A MRNA 3'-END-processing 99.5 8E-10 2.7E-14 107.6 35.8 394 7-406 73-575 (679)
70 2ond_A Cleavage stimulation fa 99.4 4.2E-11 1.4E-15 106.6 24.4 214 219-438 33-273 (308)
71 3vtx_A MAMA; tetratricopeptide 99.4 5.7E-12 1.9E-16 103.0 17.3 167 236-406 4-175 (184)
72 3nf1_A KLC 1, kinesin light ch 99.4 1.2E-12 3.9E-17 116.8 12.9 247 135-404 26-310 (311)
73 1hz4_A MALT regulatory protein 99.4 2.8E-10 9.7E-15 104.3 28.9 192 241-433 97-320 (373)
74 3as5_A MAMA; tetratricopeptide 99.4 3.2E-12 1.1E-16 104.4 14.0 158 275-436 15-174 (186)
75 4gyw_A UDP-N-acetylglucosamine 99.4 9.4E-12 3.2E-16 122.5 18.0 161 268-434 9-173 (723)
76 3q15_A PSP28, response regulat 99.4 1.6E-11 5.5E-16 112.8 17.9 193 239-433 143-363 (378)
77 4e6h_A MRNA 3'-END-processing 99.4 1.1E-09 3.8E-14 106.6 31.5 416 20-439 52-574 (679)
78 4i17_A Hypothetical protein; T 99.4 1.8E-11 6.1E-16 103.9 15.8 192 235-438 5-212 (228)
79 3q15_A PSP28, response regulat 99.4 2.1E-10 7.2E-15 105.3 23.9 227 173-401 107-365 (378)
80 4abn_A Tetratricopeptide repea 99.4 4.2E-11 1.4E-15 113.3 19.5 207 183-395 84-315 (474)
81 3as5_A MAMA; tetratricopeptide 99.3 8.3E-11 2.8E-15 95.8 17.8 168 237-408 8-180 (186)
82 1hz4_A MALT regulatory protein 99.3 1.1E-09 3.7E-14 100.4 25.4 225 71-295 19-280 (373)
83 4i17_A Hypothetical protein; T 99.3 4.7E-10 1.6E-14 95.0 20.9 203 202-416 7-224 (228)
84 1qqe_A Vesicular transport pro 99.3 2.3E-10 7.8E-15 100.9 17.7 188 246-434 46-268 (292)
85 3edt_B KLC 2, kinesin light ch 99.3 4.1E-11 1.4E-15 105.0 12.3 32 403-434 249-280 (283)
86 1qqe_A Vesicular transport pro 99.2 1.9E-09 6.7E-14 95.0 22.2 189 175-366 45-267 (292)
87 3mv2_B Coatomer subunit epsilo 99.2 2.7E-09 9.3E-14 92.4 20.6 241 143-406 20-287 (310)
88 4gyw_A UDP-N-acetylglucosamine 99.2 3E-10 1E-14 111.9 16.3 163 235-402 7-175 (723)
89 3mv2_B Coatomer subunit epsilo 99.2 6.3E-09 2.1E-13 90.1 22.1 78 186-264 85-163 (310)
90 3edt_B KLC 2, kinesin light ch 99.2 1.9E-09 6.4E-14 94.2 18.7 199 202-401 43-281 (283)
91 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.5E-09 8.5E-14 90.3 18.4 186 237-441 4-219 (225)
92 2fo7_A Synthetic consensus TPR 99.2 7.2E-10 2.4E-14 84.9 13.4 128 306-436 4-133 (136)
93 3qky_A Outer membrane assembly 99.1 2.4E-09 8.1E-14 92.7 17.4 99 234-332 12-126 (261)
94 3qky_A Outer membrane assembly 99.1 1.8E-09 6.2E-14 93.5 16.5 202 200-424 13-250 (261)
95 2pzi_A Probable serine/threoni 99.1 6.3E-10 2.2E-14 110.0 13.2 168 213-385 402-582 (681)
96 2fo7_A Synthetic consensus TPR 99.0 7.4E-09 2.5E-13 79.1 15.0 131 270-404 3-135 (136)
97 4ga2_A E3 SUMO-protein ligase 99.0 2.6E-10 8.9E-15 89.5 6.5 140 277-421 6-149 (150)
98 3rjv_A Putative SEL1 repeat pr 99.0 4.3E-08 1.5E-12 81.7 20.4 172 256-437 5-199 (212)
99 3qou_A Protein YBBN; thioredox 99.0 6E-09 2.1E-13 91.5 15.5 172 257-433 106-282 (287)
100 2vsy_A XCC0866; transferase, g 99.0 4.6E-09 1.6E-13 102.0 15.3 160 250-413 2-169 (568)
101 2uy1_A Cleavage stimulation fa 99.0 3.9E-07 1.3E-11 86.1 27.8 339 48-400 28-412 (493)
102 4ga2_A E3 SUMO-protein ligase 99.0 8.3E-10 2.8E-14 86.6 7.7 126 309-438 3-132 (150)
103 2pzi_A Probable serine/threoni 99.0 2.1E-08 7.2E-13 99.1 19.0 183 178-367 402-604 (681)
104 3gyz_A Chaperone protein IPGC; 99.0 4.2E-09 1.4E-13 82.2 11.1 104 334-438 30-136 (151)
105 3urz_A Uncharacterized protein 99.0 3.2E-08 1.1E-12 82.2 16.4 134 241-378 58-197 (208)
106 3urz_A Uncharacterized protein 98.9 8.4E-08 2.9E-12 79.7 18.5 131 271-405 57-190 (208)
107 2ifu_A Gamma-SNAP; membrane fu 98.9 7.9E-08 2.7E-12 85.3 19.4 221 179-428 3-254 (307)
108 2r5s_A Uncharacterized protein 98.9 6.5E-09 2.2E-13 83.9 11.0 75 358-433 93-171 (176)
109 3qou_A Protein YBBN; thioredox 98.9 7.1E-08 2.4E-12 84.6 17.9 164 199-364 114-280 (287)
110 4gco_A Protein STI-1; structur 98.9 7E-09 2.4E-13 78.4 9.8 106 305-413 15-122 (126)
111 2vsy_A XCC0866; transferase, g 98.9 2.9E-08 9.9E-13 96.3 16.8 147 215-365 2-154 (568)
112 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.1E-07 3.6E-12 80.2 17.5 185 201-407 3-219 (225)
113 3dra_A Protein farnesyltransfe 98.9 5.1E-07 1.8E-11 79.0 22.1 220 182-408 48-295 (306)
114 2r5s_A Uncharacterized protein 98.9 6.7E-08 2.3E-12 77.9 15.5 156 138-296 8-172 (176)
115 3u3w_A Transcriptional activat 98.9 2.9E-07 9.8E-12 81.0 20.7 161 273-434 80-265 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.9 6.4E-08 2.2E-12 80.7 15.6 130 269-405 7-154 (213)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 5.5E-08 1.9E-12 86.3 15.9 195 114-330 4-222 (307)
118 3dra_A Protein farnesyltransfe 98.9 3.5E-06 1.2E-10 73.7 26.5 214 217-434 48-286 (306)
119 4gco_A Protein STI-1; structur 98.9 1.9E-08 6.7E-13 75.9 10.7 103 335-438 8-113 (126)
120 2vgx_A Chaperone SYCD; alterna 98.8 7.8E-09 2.7E-13 80.7 8.2 97 339-436 21-119 (148)
121 3rjv_A Putative SEL1 repeat pr 98.8 8.9E-08 3.1E-12 79.8 14.9 171 53-232 5-198 (212)
122 2qfc_A PLCR protein; TPR, HTH, 98.8 1.3E-07 4.3E-12 83.3 16.3 162 271-433 78-264 (293)
123 1a17_A Serine/threonine protei 98.8 6.1E-08 2.1E-12 77.1 12.4 126 305-433 15-144 (166)
124 2uy1_A Cleavage stimulation fa 98.8 2.1E-06 7.2E-11 81.1 24.2 348 69-434 18-412 (493)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.2E-07 1.8E-11 75.0 17.1 131 239-370 8-153 (213)
126 2c2l_A CHIP, carboxy terminus 98.7 2.8E-08 9.5E-13 86.9 9.2 187 238-434 5-198 (281)
127 1na0_A Designed protein CTPR3; 98.7 1.5E-07 5.1E-12 70.6 11.9 115 303-420 9-125 (125)
128 2lni_A Stress-induced-phosphop 98.7 9.9E-08 3.4E-12 72.6 11.0 115 304-421 17-133 (133)
129 3u3w_A Transcriptional activat 98.7 3.6E-06 1.2E-10 73.9 22.1 159 242-401 80-266 (293)
130 2vyi_A SGTA protein; chaperone 98.7 1.1E-07 3.8E-12 71.9 10.7 117 303-422 12-130 (131)
131 2xcb_A PCRH, regulatory protei 98.7 1.1E-07 3.9E-12 73.5 10.7 97 339-436 18-116 (142)
132 2kck_A TPR repeat; tetratricop 98.7 9.1E-08 3.1E-12 70.2 9.2 100 339-439 6-110 (112)
133 2e2e_A Formate-dependent nitri 98.7 9E-08 3.1E-12 77.2 9.9 128 278-409 20-152 (177)
134 4f3v_A ESX-1 secretion system 98.7 2.7E-07 9.2E-12 78.9 12.8 121 312-436 111-238 (282)
135 2qfc_A PLCR protein; TPR, HTH, 98.7 1.6E-06 5.3E-11 76.3 18.3 163 238-401 76-266 (293)
136 3upv_A Heat shock protein STI1 98.7 1.8E-07 6E-12 70.6 10.6 96 340-436 5-102 (126)
137 1p5q_A FKBP52, FK506-binding p 98.7 2.3E-07 7.9E-12 83.3 13.1 143 268-433 147-292 (336)
138 1hxi_A PEX5, peroxisome target 98.6 1.3E-07 4.3E-12 70.8 9.0 97 341-438 19-117 (121)
139 4f3v_A ESX-1 secretion system 98.6 4.3E-07 1.5E-11 77.6 13.2 136 272-413 106-248 (282)
140 3gyz_A Chaperone protein IPGC; 98.6 5.4E-07 1.9E-11 70.1 12.0 100 304-406 37-138 (151)
141 3sz7_A HSC70 cochaperone (SGT) 98.6 1.9E-07 6.5E-12 74.2 9.3 110 302-414 10-121 (164)
142 3gw4_A Uncharacterized protein 98.6 2.8E-06 9.7E-11 69.8 16.8 60 271-330 69-134 (203)
143 3q49_B STIP1 homology and U bo 98.6 5.5E-07 1.9E-11 68.9 11.4 95 339-434 9-105 (137)
144 4gcn_A Protein STI-1; structur 98.6 2.2E-07 7.4E-12 70.3 8.8 96 340-436 9-113 (127)
145 1elw_A TPR1-domain of HOP; HOP 98.6 7E-07 2.4E-11 66.0 11.4 93 342-435 7-101 (118)
146 3gw4_A Uncharacterized protein 98.6 7E-07 2.4E-11 73.5 12.5 62 168-229 27-93 (203)
147 2lni_A Stress-induced-phosphop 98.6 6E-07 2E-11 68.1 10.7 102 336-438 13-116 (133)
148 2fbn_A 70 kDa peptidylprolyl i 98.5 5.2E-07 1.8E-11 74.2 10.9 167 247-435 14-186 (198)
149 3q7a_A Farnesyltransferase alp 98.5 8.6E-05 2.9E-09 65.7 25.4 179 171-354 58-257 (349)
150 1na0_A Designed protein CTPR3; 98.5 5.5E-07 1.9E-11 67.4 10.0 98 339-437 9-108 (125)
151 1a17_A Serine/threonine protei 98.5 2.6E-06 8.9E-11 67.4 14.5 24 341-364 83-106 (166)
152 1elw_A TPR1-domain of HOP; HOP 98.5 1.4E-06 4.7E-11 64.4 12.1 109 304-415 5-115 (118)
153 2vgx_A Chaperone SYCD; alterna 98.5 2.4E-07 8.2E-12 72.1 8.0 103 303-408 21-125 (148)
154 2e2e_A Formate-dependent nitri 98.5 1E-06 3.5E-11 70.9 11.9 123 314-438 21-147 (177)
155 2c2l_A CHIP, carboxy terminus 98.5 5.5E-07 1.9E-11 78.6 10.2 93 169-263 6-98 (281)
156 2xcb_A PCRH, regulatory protei 98.5 8.1E-07 2.8E-11 68.6 10.0 104 305-411 20-125 (142)
157 3sz7_A HSC70 cochaperone (SGT) 98.5 1.9E-06 6.6E-11 68.3 12.3 95 268-365 11-105 (164)
158 3upv_A Heat shock protein STI1 98.5 9.5E-07 3.2E-11 66.5 10.0 109 305-416 6-122 (126)
159 2dba_A Smooth muscle cell asso 98.5 2.7E-06 9.2E-11 65.8 12.9 110 303-416 28-143 (148)
160 2dba_A Smooth muscle cell asso 98.5 1.4E-06 4.7E-11 67.6 11.0 101 337-438 26-131 (148)
161 2vyi_A SGTA protein; chaperone 98.5 1E-06 3.5E-11 66.4 9.9 99 338-437 11-111 (131)
162 3q7a_A Farnesyltransferase alp 98.4 0.00021 7.3E-09 63.2 25.0 176 73-252 61-257 (349)
163 3q49_B STIP1 homology and U bo 98.4 1.8E-06 6.1E-11 66.0 10.0 100 302-404 8-109 (137)
164 4b4t_Q 26S proteasome regulato 98.4 5.7E-06 1.9E-10 77.1 15.2 162 271-433 58-243 (434)
165 2xev_A YBGF; tetratricopeptide 98.4 1.5E-06 5.1E-11 65.6 8.6 97 309-408 8-112 (129)
166 1wao_1 Serine/threonine protei 98.4 1.4E-06 4.7E-11 82.2 10.1 119 309-430 12-134 (477)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 5E-06 1.7E-10 78.0 13.5 142 269-433 269-413 (457)
168 3rkv_A Putative peptidylprolyl 98.3 1.6E-06 5.6E-11 68.5 8.6 103 303-406 11-131 (162)
169 3dss_A Geranylgeranyl transfer 98.3 0.00011 3.8E-09 64.6 20.7 128 178-309 40-185 (331)
170 1elr_A TPR2A-domain of HOP; HO 98.3 1.5E-06 5.2E-11 65.5 7.9 109 304-416 5-122 (131)
171 2hr2_A Hypothetical protein; a 98.3 2.3E-06 7.9E-11 66.0 8.7 62 373-435 59-131 (159)
172 2kck_A TPR repeat; tetratricop 98.3 6.3E-06 2.1E-10 60.1 11.0 100 304-406 7-111 (112)
173 4gcn_A Protein STI-1; structur 98.3 1.1E-05 3.9E-10 60.6 12.5 25 272-296 87-111 (127)
174 1p5q_A FKBP52, FK506-binding p 98.3 1.1E-05 3.9E-10 72.2 14.3 159 150-330 127-292 (336)
175 2if4_A ATFKBP42; FKBP-like, al 98.3 2.4E-06 8.3E-11 76.6 9.3 151 269-440 180-333 (338)
176 3dss_A Geranylgeranyl transfer 98.3 0.00045 1.5E-08 60.8 23.2 95 183-279 90-190 (331)
177 1elr_A TPR2A-domain of HOP; HO 98.3 3.6E-06 1.2E-10 63.4 8.6 111 269-380 5-121 (131)
178 3k9i_A BH0479 protein; putativ 98.3 5.7E-07 2E-11 66.8 3.9 90 316-407 3-96 (117)
179 2fbn_A 70 kDa peptidylprolyl i 98.3 2E-06 6.9E-11 70.6 7.6 120 237-359 38-176 (198)
180 3ro3_A PINS homolog, G-protein 98.2 5E-06 1.7E-10 65.3 9.3 128 306-434 12-157 (164)
181 1hxi_A PEX5, peroxisome target 98.2 7.1E-06 2.4E-10 61.2 9.3 96 308-406 22-119 (121)
182 2xev_A YBGF; tetratricopeptide 98.2 2.1E-05 7.3E-10 59.1 12.2 91 345-436 8-106 (129)
183 4b4t_Q 26S proteasome regulato 98.2 4.3E-05 1.5E-09 71.1 16.8 183 143-325 11-238 (434)
184 1ihg_A Cyclophilin 40; ppiase 98.2 8.5E-06 2.9E-10 73.9 10.8 136 270-428 225-363 (370)
185 3rkv_A Putative peptidylprolyl 98.2 4.5E-06 1.5E-10 66.0 7.7 94 270-365 13-123 (162)
186 3k9i_A BH0479 protein; putativ 98.1 2.3E-06 8E-11 63.4 4.7 83 352-435 3-90 (117)
187 2l6j_A TPR repeat-containing p 98.1 1.1E-06 3.9E-11 64.2 2.9 94 338-432 3-104 (111)
188 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6.3E-10 61.9 10.0 60 341-401 91-158 (164)
189 3ma5_A Tetratricopeptide repea 98.1 1.6E-05 5.6E-10 56.8 8.8 66 369-435 5-70 (100)
190 1dce_A Protein (RAB geranylger 98.0 0.00038 1.3E-08 66.8 19.6 168 253-424 45-244 (567)
191 3n71_A Histone lysine methyltr 98.0 3.4E-05 1.2E-09 72.3 11.4 123 312-435 318-464 (490)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 1.8E-05 6.3E-10 70.9 9.2 152 237-406 179-333 (338)
193 2hr2_A Hypothetical protein; a 98.0 1.9E-05 6.5E-10 60.9 7.8 72 341-413 59-143 (159)
194 3bee_A Putative YFRE protein; 98.0 5.9E-05 2E-09 52.8 9.1 73 368-442 3-78 (93)
195 1na3_A Designed protein CTPR2; 98.0 4.1E-05 1.4E-09 53.3 8.3 81 339-420 9-91 (91)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 4.1E-05 1.4E-09 71.7 10.4 99 339-438 268-383 (457)
197 1wao_1 Serine/threonine protei 97.9 4.8E-05 1.6E-09 71.6 10.9 120 241-363 10-134 (477)
198 1ihg_A Cyclophilin 40; ppiase 97.9 0.00013 4.5E-09 66.1 12.3 117 240-359 226-361 (370)
199 2kat_A Uncharacterized protein 97.9 6.8E-05 2.3E-09 55.0 8.7 80 322-404 4-85 (115)
200 1klx_A Cysteine rich protein B 97.8 0.00018 6.1E-09 54.9 10.8 89 345-436 31-127 (138)
201 1zu2_A Mitochondrial import re 97.8 1.2E-05 4E-10 61.9 3.7 98 315-437 14-122 (158)
202 2l6j_A TPR repeat-containing p 97.8 7.4E-05 2.5E-09 54.2 8.0 68 370-438 3-70 (111)
203 1klx_A Cysteine rich protein B 97.7 0.0013 4.5E-08 49.9 13.2 112 282-403 9-128 (138)
204 1na3_A Designed protein CTPR2; 97.7 0.00016 5.6E-09 50.1 7.4 67 370-437 8-74 (91)
205 3n71_A Histone lysine methyltr 97.6 0.00034 1.2E-08 65.6 11.5 95 237-331 351-463 (490)
206 1dce_A Protein (RAB geranylger 97.6 0.00095 3.2E-08 64.1 14.8 155 280-438 40-224 (567)
207 2kat_A Uncharacterized protein 97.5 0.00039 1.3E-08 50.8 7.9 76 287-365 4-79 (115)
208 1zu2_A Mitochondrial import re 97.5 0.00041 1.4E-08 53.3 7.5 125 279-436 13-148 (158)
209 2kc7_A BFR218_protein; tetratr 97.4 0.00019 6.6E-09 50.8 5.3 80 345-433 6-88 (99)
210 2kc7_A BFR218_protein; tetratr 97.3 0.0005 1.7E-08 48.6 6.6 62 377-439 6-68 (99)
211 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.7E-08 47.1 8.3 60 270-330 9-68 (100)
212 3qww_A SET and MYND domain-con 97.2 0.00044 1.5E-08 63.6 6.3 81 352-433 311-409 (433)
213 3ly7_A Transcriptional activat 97.1 0.021 7.3E-07 50.5 15.6 46 266-313 192-243 (372)
214 3lvg_A Clathrin heavy chain 1; 97.1 0.0012 4.1E-08 59.8 7.5 223 49-289 40-325 (624)
215 3qwp_A SET and MYND domain-con 97.1 0.0015 5.1E-08 60.2 8.2 86 347-433 295-398 (429)
216 3qww_A SET and MYND domain-con 97.0 0.0044 1.5E-07 57.0 10.9 93 315-408 310-423 (433)
217 3ly7_A Transcriptional activat 97.0 0.012 4.2E-07 52.0 13.1 136 299-439 190-343 (372)
218 3mkq_A Coatomer beta'-subunit; 97.0 0.017 5.8E-07 58.3 16.2 102 247-366 662-763 (814)
219 1qsa_A Protein (soluble lytic 96.9 0.3 1E-05 47.0 23.3 249 140-400 76-347 (618)
220 3qwp_A SET and MYND domain-con 96.8 0.01 3.5E-07 54.7 11.6 99 310-409 294-413 (429)
221 3mkq_A Coatomer beta'-subunit; 96.8 0.1 3.5E-06 52.6 19.6 154 74-262 607-761 (814)
222 3u64_A Protein TP_0956; tetrat 96.7 0.0088 3E-07 50.7 9.2 87 355-442 179-276 (301)
223 2v5f_A Prolyl 4-hydroxylase su 96.7 0.013 4.4E-07 41.7 9.0 73 339-412 5-86 (104)
224 3mkq_B Coatomer subunit alpha; 96.5 0.17 6E-06 39.4 14.7 105 143-264 12-116 (177)
225 1wy6_A Hypothetical protein ST 96.5 0.16 5.5E-06 37.2 13.2 148 69-234 8-157 (172)
226 1wy6_A Hypothetical protein ST 96.4 0.16 5.6E-06 37.2 14.8 142 278-439 17-158 (172)
227 1pc2_A Mitochondria fission pr 96.3 0.0044 1.5E-07 47.0 4.8 91 315-408 10-107 (152)
228 2v5f_A Prolyl 4-hydroxylase su 96.3 0.014 4.7E-07 41.5 7.1 68 370-438 4-78 (104)
229 1pc2_A Mitochondria fission pr 96.3 0.016 5.4E-07 44.0 7.5 80 284-366 14-98 (152)
230 3lvg_A Clathrin heavy chain 1; 96.1 0.00016 5.4E-09 65.4 -4.9 236 135-391 53-323 (624)
231 3bee_A Putative YFRE protein; 96.1 0.067 2.3E-06 37.0 9.5 70 336-406 3-77 (93)
232 1nzn_A CGI-135 protein, fissio 95.4 0.28 9.4E-06 35.8 10.6 93 315-410 13-112 (126)
233 4gns_B Protein CSD3, chitin bi 95.3 0.089 3.1E-06 51.6 10.3 55 378-433 344-398 (754)
234 3mkq_B Coatomer subunit alpha; 95.3 0.79 2.7E-05 35.7 16.7 128 246-398 14-141 (177)
235 4h7y_A Dual specificity protei 94.8 0.22 7.4E-06 37.4 8.8 102 302-406 12-128 (161)
236 1nzn_A CGI-135 protein, fissio 94.3 0.067 2.3E-06 39.0 5.0 84 354-438 16-106 (126)
237 3u64_A Protein TP_0956; tetrat 93.3 0.66 2.3E-05 39.4 9.9 63 270-332 201-269 (301)
238 4fhn_B Nucleoporin NUP120; pro 93.2 2.8 9.5E-05 44.0 16.8 164 235-401 840-1050(1139)
239 3ffl_A Anaphase-promoting comp 93.2 0.83 2.8E-05 35.0 9.4 111 244-368 27-151 (167)
240 4fhn_B Nucleoporin NUP120; pro 93.2 3.2 0.00011 43.6 17.1 53 140-193 816-868 (1139)
241 2ff4_A Probable regulatory pro 93.2 0.19 6.6E-06 45.5 7.1 64 377-441 177-245 (388)
242 4ady_A RPN2, 26S proteasome re 93.0 5.4 0.00018 40.2 17.3 286 105-399 343-656 (963)
243 1y8m_A FIS1; mitochondria, unk 92.9 1.1 3.7E-05 33.3 9.4 71 336-407 36-112 (144)
244 4h7y_A Dual specificity protei 92.9 0.75 2.6E-05 34.5 8.5 67 63-130 10-89 (161)
245 3ffl_A Anaphase-promoting comp 92.5 0.5 1.7E-05 36.2 7.4 125 297-436 12-152 (167)
246 1v54_E Cytochrome C oxidase po 91.9 0.82 2.8E-05 31.5 6.9 64 283-348 25-88 (109)
247 3o48_A Mitochondria fission 1 91.6 1 3.5E-05 33.0 7.8 72 336-408 37-114 (134)
248 2wpv_A GET4, UPF0363 protein Y 91.2 6.8 0.00023 33.8 21.1 168 139-332 36-217 (312)
249 4gns_B Protein CSD3, chitin bi 90.3 1.6 5.4E-05 42.9 10.2 53 312-366 346-398 (754)
250 4b4t_P 26S proteasome regulato 89.6 12 0.00042 34.3 18.0 186 180-365 29-244 (445)
251 4ady_A RPN2, 26S proteasome re 89.3 20 0.00068 36.3 22.9 250 176-434 383-657 (963)
252 3lpz_A GET4 (YOR164C homolog); 88.8 11 0.00039 32.7 21.0 167 139-331 38-215 (336)
253 2y69_E Cytochrome C oxidase su 88.6 2.2 7.7E-05 31.1 7.3 64 283-348 68-131 (152)
254 1v54_E Cytochrome C oxidase po 87.3 3.4 0.00012 28.5 7.2 60 184-244 27-86 (109)
255 2uwj_G Type III export protein 87.2 5.5 0.00019 27.3 8.4 87 115-206 20-106 (115)
256 2ff4_A Probable regulatory pro 87.0 3.6 0.00012 37.0 9.8 69 272-341 175-247 (388)
257 2uwj_G Type III export protein 86.8 5.8 0.0002 27.2 9.4 87 216-307 20-106 (115)
258 2p58_C Putative type III secre 86.8 5.8 0.0002 27.2 8.4 87 115-206 21-107 (116)
259 2p58_C Putative type III secre 86.2 6.3 0.00022 27.0 9.9 87 216-307 21-107 (116)
260 3lpz_A GET4 (YOR164C homolog); 84.3 20 0.00069 31.2 20.5 114 238-363 36-160 (336)
261 1zbp_A Hypothetical protein VP 83.5 19 0.00064 30.2 12.1 120 276-407 5-135 (273)
262 1zbp_A Hypothetical protein VP 82.9 2 6.8E-05 35.9 5.4 57 348-405 6-64 (273)
263 3o48_A Mitochondria fission 1 81.8 13 0.00045 27.2 9.4 65 300-365 37-104 (134)
264 1y8m_A FIS1; mitochondria, unk 80.7 15 0.00052 27.2 10.7 68 369-436 37-107 (144)
265 2y69_E Cytochrome C oxidase su 80.4 8.5 0.00029 28.2 7.2 59 185-244 71-129 (152)
266 4b4t_R RPN7, 26S proteasome re 80.0 8.5 0.00029 35.2 9.2 97 238-334 132-239 (429)
267 3esl_A Checkpoint serine/threo 78.1 22 0.00075 28.2 9.6 51 389-439 96-148 (202)
268 4b4t_P 26S proteasome regulato 75.5 49 0.0017 30.3 22.0 194 150-363 30-262 (445)
269 4b4t_R RPN7, 26S proteasome re 75.1 28 0.00096 31.7 11.2 94 204-297 133-237 (429)
270 3ltm_A Alpha-REP4; protein eng 72.5 34 0.0012 27.1 19.4 48 236-283 94-141 (211)
271 2wvi_A Mitotic checkpoint seri 70.2 32 0.0011 26.3 8.6 48 392-439 80-129 (164)
272 4a1g_A Mitotic checkpoint seri 68.9 35 0.0012 25.7 8.4 49 391-439 84-134 (152)
273 2wpv_A GET4, UPF0363 protein Y 68.2 58 0.002 28.0 20.7 115 238-363 34-158 (312)
274 3ltm_A Alpha-REP4; protein eng 65.0 50 0.0017 26.1 19.4 145 143-296 40-184 (211)
275 3eiq_C Programmed cell death p 64.8 5.4 0.00019 35.2 3.8 64 240-303 220-288 (358)
276 4b4t_S RPN3, 26S proteasome re 61.7 1E+02 0.0036 28.7 12.2 62 236-297 230-299 (523)
277 1k1a_A B-cell lymphoma 3-encod 60.8 63 0.0022 25.9 9.9 86 73-162 13-102 (241)
278 2d2s_A Exocyst complex compone 55.5 45 0.0015 27.3 7.6 23 72-94 24-46 (235)
279 3kea_A K1L; tropism, ANK repea 55.2 93 0.0032 26.1 10.5 13 47-59 41-53 (285)
280 2ion_A PDCD4, programmed cell 54.5 66 0.0023 24.2 8.4 63 140-202 13-80 (152)
281 3txn_A 26S proteasome regulato 53.5 1.2E+02 0.0043 27.0 22.0 284 137-437 20-345 (394)
282 1wdy_A 2-5A-dependent ribonucl 53.3 94 0.0032 25.6 12.9 20 216-235 193-212 (285)
283 4aez_C MAD3, mitotic spindle c 52.8 52 0.0018 26.6 7.3 29 371-400 150-178 (223)
284 3ltj_A Alpharep-4; protein eng 52.8 79 0.0027 24.6 17.9 30 265-295 149-178 (201)
285 3esl_A Checkpoint serine/threo 52.7 85 0.0029 24.9 10.3 57 281-338 92-149 (202)
286 1wdy_A 2-5A-dependent ribonucl 52.1 98 0.0034 25.4 13.4 176 13-202 15-214 (285)
287 2d2s_A Exocyst complex compone 51.1 70 0.0024 26.2 8.0 29 337-365 89-117 (235)
288 4a1g_A Mitotic checkpoint seri 49.8 80 0.0027 23.7 8.9 50 186-235 84-134 (152)
289 4b4t_S RPN3, 26S proteasome re 49.4 58 0.002 30.3 7.9 63 303-365 231-296 (523)
290 3jxi_A Vanilloid receptor-rela 49.2 49 0.0017 27.1 7.2 91 73-163 9-117 (260)
291 3mv2_A Coatomer subunit alpha; 48.7 1.3E+02 0.0045 25.9 10.9 126 278-436 124-257 (325)
292 2nsz_A Programmed cell death p 48.6 75 0.0025 23.0 9.8 63 140-202 11-78 (129)
293 3eu9_A Huntingtin-interacting 47.6 1E+02 0.0036 24.4 9.4 19 245-263 215-233 (240)
294 2w57_A Ferric uptake regulatio 47.2 65 0.0022 24.1 6.8 63 90-153 6-69 (150)
295 1oyz_A Hypothetical protein YI 46.4 1.3E+02 0.0043 25.0 20.5 244 55-315 27-279 (280)
296 3txn_A 26S proteasome regulato 46.2 1.6E+02 0.0056 26.3 26.9 234 102-340 20-290 (394)
297 2ion_A PDCD4, programmed cell 44.8 88 0.003 23.5 7.1 61 240-300 12-77 (152)
298 2fu4_A Ferric uptake regulatio 43.8 63 0.0022 20.9 6.7 61 91-152 7-68 (83)
299 1mzb_A Ferric uptake regulatio 43.8 61 0.0021 23.7 6.1 60 92-152 9-69 (136)
300 2nsz_A Programmed cell death p 43.4 91 0.0031 22.6 8.3 62 240-301 10-76 (129)
301 3hra_A Ankyrin repeat family p 43.3 1.1E+02 0.0038 23.5 9.8 50 46-100 14-66 (201)
302 2fe3_A Peroxide operon regulat 42.2 76 0.0026 23.5 6.5 60 92-152 13-72 (145)
303 3eu9_A Huntingtin-interacting 41.6 1.3E+02 0.0044 23.8 9.5 14 279-292 218-231 (240)
304 3ljn_A Hypothetical protein; a 41.3 1E+02 0.0034 26.9 8.3 15 248-262 252-266 (364)
305 3hra_A Ankyrin repeat family p 41.2 1.2E+02 0.0041 23.3 8.1 153 75-236 11-172 (201)
306 3ygs_P Procaspase 9; apoptosis 41.1 48 0.0016 22.6 4.7 38 251-288 51-88 (97)
307 4gq2_M Nucleoporin NUP120; bet 40.6 1.5E+02 0.0052 30.3 10.3 51 309-365 816-866 (950)
308 3ltj_A Alpharep-4; protein eng 40.3 1.3E+02 0.0043 23.3 20.6 110 235-353 88-197 (201)
309 2fe3_A Peroxide operon regulat 39.7 98 0.0034 22.9 6.8 34 218-251 37-70 (145)
310 2wvi_A Mitotic checkpoint seri 39.2 1.3E+02 0.0043 23.0 8.2 54 83-136 77-131 (164)
311 2zu6_B Programmed cell death p 38.7 1.9E+02 0.0064 24.8 11.0 195 140-337 7-235 (307)
312 3eyy_A Putative iron uptake re 38.5 61 0.0021 24.0 5.4 60 91-152 9-68 (145)
313 2xig_A Ferric uptake regulatio 38.1 76 0.0026 23.7 5.9 62 90-152 16-77 (150)
314 2xig_A Ferric uptake regulatio 37.3 1.3E+02 0.0043 22.4 7.5 63 52-115 13-75 (150)
315 4aez_C MAD3, mitotic spindle c 36.4 1.7E+02 0.0058 23.6 8.8 53 83-135 131-184 (223)
316 1ya0_A SMG-7 transcript varian 36.1 1.3E+02 0.0043 28.0 8.1 52 379-431 160-211 (497)
317 2p1h_A APAF-1, apoptotic prote 35.6 98 0.0034 20.7 5.8 62 19-84 24-85 (94)
318 3eiq_C Programmed cell death p 35.1 2.3E+02 0.008 24.9 12.6 61 271-332 220-282 (358)
319 4ets_A Ferric uptake regulatio 34.0 67 0.0023 24.4 5.1 71 83-154 14-87 (162)
320 2o03_A Probable zinc uptake re 33.5 70 0.0024 23.2 5.0 44 72-115 16-59 (131)
321 2p1h_A APAF-1, apoptotic prote 33.4 1.1E+02 0.0037 20.5 7.3 61 221-285 24-84 (94)
322 3twr_A Tankyrase-2; ankyrin re 33.1 1.5E+02 0.005 21.9 9.5 51 45-100 16-69 (165)
323 3kea_A K1L; tropism, ANK repea 32.6 1.3E+02 0.0043 25.2 7.3 104 49-161 11-117 (285)
324 2r9g_A AAA ATPase, central reg 31.8 1.9E+02 0.0065 22.9 9.2 99 164-263 8-114 (204)
325 2qx5_A Nucleoporin NIC96; mRNA 31.8 3.6E+02 0.012 26.1 19.9 44 69-113 155-198 (661)
326 3mwm_A ZUR, putative metal upt 31.7 67 0.0023 23.6 4.6 33 72-104 19-51 (139)
327 4ets_A Ferric uptake regulatio 31.1 1.1E+02 0.0037 23.2 5.8 59 193-252 24-84 (162)
328 4gq2_M Nucleoporin NUP120; bet 31.1 4.2E+02 0.014 27.1 11.8 127 142-282 816-950 (950)
329 2qq8_A TBC1 domain family memb 30.8 1.4E+02 0.0048 25.9 7.3 79 289-368 214-295 (334)
330 3bge_A Predicted ATPase; struc 29.1 2.1E+02 0.0073 22.5 8.9 45 172-216 9-56 (201)
331 3ljn_A Hypothetical protein; a 28.7 1.6E+02 0.0055 25.5 7.5 16 247-262 180-195 (364)
332 3qye_A TBC1 domain family memb 27.8 2.9E+02 0.01 23.7 12.0 95 289-384 209-307 (331)
333 3bqo_A Telomeric repeat-bindin 27.6 1.8E+02 0.0061 23.0 6.3 47 49-95 93-146 (211)
334 3ygs_P Procaspase 9; apoptosis 27.3 79 0.0027 21.5 4.0 37 150-186 51-87 (97)
335 2pnn_A Transient receptor pote 27.0 2.1E+02 0.0073 23.3 7.7 97 65-163 10-125 (273)
336 2o03_A Probable zinc uptake re 26.2 1.4E+02 0.0047 21.5 5.4 44 173-216 16-59 (131)
337 2w57_A Ferric uptake regulatio 26.0 1.1E+02 0.0037 22.8 5.0 50 68-117 18-68 (150)
338 3eyy_A Putative iron uptake re 25.9 1.7E+02 0.0057 21.6 6.0 33 219-251 34-66 (145)
339 1n11_A Ankyrin; clathrin, BAND 25.9 3.4E+02 0.012 24.1 9.4 359 43-435 20-402 (437)
340 1ug3_A EIF4GI, eukaryotic prot 25.6 93 0.0032 27.1 5.2 25 170-194 14-38 (339)
341 2zu6_B Programmed cell death p 25.6 3.2E+02 0.011 23.4 8.9 60 140-199 170-234 (307)
342 2b7e_A PRE-mRNA processing pro 25.4 96 0.0033 18.8 3.5 30 82-111 2-31 (59)
343 3ctd_A Putative ATPase, AAA fa 25.1 2.6E+02 0.009 22.3 8.7 66 168-233 33-106 (213)
344 3mwm_A ZUR, putative metal upt 24.7 1.2E+02 0.0041 22.2 5.0 38 175-212 21-58 (139)
345 1qsa_A Protein (soluble lytic 24.5 4.7E+02 0.016 25.1 35.8 322 48-396 86-437 (618)
346 1ug3_A EIF4GI, eukaryotic prot 24.3 3.5E+02 0.012 23.4 12.6 60 140-199 15-78 (339)
347 2crb_A Nuclear receptor bindin 23.0 1.1E+02 0.0037 20.6 3.7 25 408-432 17-41 (97)
348 3bqo_A Telomeric repeat-bindin 22.5 2.9E+02 0.0099 21.8 8.1 26 379-405 125-150 (211)
349 2ijq_A Hypothetical protein; s 22.4 2.4E+02 0.0082 21.4 6.1 60 69-129 36-103 (161)
350 2etb_A Transient receptor pote 21.7 2.8E+02 0.0096 22.3 7.4 56 73-129 6-71 (256)
351 3jxi_A Vanilloid receptor-rela 21.4 1.9E+02 0.0064 23.4 6.2 54 108-161 9-71 (260)
352 2fu4_A Ferric uptake regulatio 20.4 1.8E+02 0.006 18.6 7.3 60 192-252 7-67 (83)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-38 Score=312.24 Aligned_cols=424 Identities=9% Similarity=-0.065 Sum_probs=369.3
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCC-CCCcccHHHHHHHHHhCCCch
Q 012504 6 IETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPV-TPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~-~~~~~~y~~li~~~~~~g~~~ 83 (462)
+...+...|+++.|..+++.+.. ..|+..++..+. .+...|++++|..+|+++.. .++..+++.++.+|.+.|+++
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHH
Confidence 34445556899999999999985 456777887777 67777899999999999842 388999999999999999999
Q ss_pred hHHHHHHHHHHC---------------CCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchH---------
Q 012504 84 ESIKLFDEMLKT---------------GLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIG--------- 139 (462)
Q Consensus 84 ~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------- 139 (462)
+|+++|+++... |..++..+|..++.++.+.|++++|.++|+.+.+.++. +...+
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcc
Confidence 999999953221 22335789999999999999999999999999987632 22222
Q ss_pred -----------------------------hHHHHHHHhcCChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHHHH
Q 012504 140 -----------------------------NTLLRMYAACKEIDVAKAVFEEMPV--RDVVSWSSMIAGFVACDSPSDALK 188 (462)
Q Consensus 140 -----------------------------~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 188 (462)
+.++..|.+.|++++|.++|+++.. ++..+|+.++..|.+.|++++|.+
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 2235566788999999999999987 789999999999999999999999
Q ss_pred HHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---
Q 012504 189 VFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--- 265 (462)
Q Consensus 189 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 265 (462)
+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 327 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 404 (597)
T 2xpi_A 327 ITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404 (597)
T ss_dssp HHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999998865 4477889999999999999999999999999765 66788999999999999999999999998863
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 012504 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCM 345 (462)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 345 (462)
.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|..+
T Consensus 405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 481 (597)
T 2xpi_A 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNEL 481 (597)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 467899999999999999999999999999874 347789999999999999999999999999874 34568899999
Q ss_pred HHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 346 VDMLGRAGLIEEAYHIIRNM-------PTEPN--AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
+..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++ ++|...++++.+..|+++.+|..++.+|
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY-DAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999999988 33566 78999999999999999 9999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHhcCCCc
Q 012504 417 SLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+.|++++|.++++++.+.++.
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-35 Score=288.90 Aligned_cols=404 Identities=7% Similarity=-0.066 Sum_probs=350.1
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCC------------------Cc
Q 012504 6 IETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTP------------------PL 66 (462)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~------------------~~ 66 (462)
+..++..+|+++.|..+++.+... .++..+++.+. .+...|++++|.++|+++.... +.
T Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 123 LAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH
Confidence 456667779999999999988643 67888899888 6666789999999999543212 47
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHH--------------------------------------H
Q 012504 67 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFV--------------------------------------V 108 (462)
Q Consensus 67 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------------------------------l 108 (462)
.+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+ +
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 89999999999999999999999999986432 22332222 4
Q ss_pred HHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhH
Q 012504 109 KACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP---VRDVVSWSSMIAGFVACDSPSD 185 (462)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 185 (462)
..|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+++.++.++.+.|++++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence 4566789999999999998876 5788999999999999999999999999986 3477899999999999999999
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC
Q 012504 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE 265 (462)
Q Consensus 186 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 265 (462)
|.++++++.+.. +.+..++..++..|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 358 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 358 LYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998653 5678899999999999999999999999999875 55788999999999999999999999998864
Q ss_pred ---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc---CCCCc-
Q 012504 266 ---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVY---NIKPT- 338 (462)
Q Consensus 266 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~- 338 (462)
.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+
T Consensus 436 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 436 LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 467899999999999999999999999999864 3478899999999999999999999999997642 44676
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 339 -MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 339 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
..+|..++.+|.+.|++++|.+.++++.. +.+..+|..+..+|...|++ ++|...++++.+..|+++..+..++.+
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP-GLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 78999999999999999999999998743 45789999999999999999 999999999999999999999999887
Q ss_pred Hhh
Q 012504 416 SSL 418 (462)
Q Consensus 416 ~~~ 418 (462)
|..
T Consensus 594 ~~~ 596 (597)
T 2xpi_A 594 LEE 596 (597)
T ss_dssp TC-
T ss_pred Hhc
Confidence 753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.3e-28 Score=225.77 Aligned_cols=366 Identities=10% Similarity=-0.012 Sum_probs=245.1
Q ss_pred cCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHH
Q 012504 47 SISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVH 124 (462)
Q Consensus 47 ~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 124 (462)
.|++++|.+.++++. .+.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...+
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 457777777665542 11234455556666677777777777777766643 235566777777777777777777777
Q ss_pred HHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC
Q 012504 125 SLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN 201 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 201 (462)
+.+.+.. +.+..++..+..++.+.|++++|.+.|+++.. | +...+..+...+...|++++|.+.|+++.+.. +.+
T Consensus 91 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 168 (388)
T 1w3b_A 91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 7777653 22344567777777777777777777776652 2 34456666677777777777777777776642 234
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHH
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGL 278 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 278 (462)
..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+ .+..++..+...+
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence 5667777777777777777777777777765 44556667777777777777777777766542 2456677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 358 (462)
...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+...+.+.|++++|
T Consensus 248 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777652 223556677777777777777777777777653 344566777777777777777777
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 012504 359 YHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG 420 (462)
Q Consensus 359 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 420 (462)
.+.++++.. +.+..++..+...+...|++ ++|...++++.+..|+.+.++..++.++...|
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKL-QEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC-HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 777776643 23456677777777777777 77777777777777777777777777666555
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5e-28 Score=224.55 Aligned_cols=357 Identities=13% Similarity=0.078 Sum_probs=309.4
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCC-cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcC
Q 012504 72 LIRAYAKTSCSIESIKLFDEMLKTGLRPD-NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACK 150 (462)
Q Consensus 72 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 150 (462)
+...+.+.|++++|++.++.+.+.. |+ ...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 4566788999999999999998753 44 4455566667888999999999999998875 457788999999999999
Q ss_pred ChhHHHHHHhcCC--CC-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHH
Q 012504 151 EIDVAKAVFEEMP--VR-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSY 227 (462)
Q Consensus 151 ~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (462)
++++|+..|+++. .| +..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999876 23 56689999999999999999999999998853 23445677788889999999999999999
Q ss_pred HHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012504 228 AVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI 304 (462)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 304 (462)
+.+.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...+...|++++|...+++..... +.+..
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 99875 55678899999999999999999999999874 345788899999999999999999999998863 22567
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
++..+..++...|++++|...++++... .+.+..+|..+..++.+.|++++|.+.|+++.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 8889999999999999999999999863 334577899999999999999999999998743 467889999999999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
..|++ ++|...++++.+..|+++.++..++.+|.+.|++++|++.++++.+..+
T Consensus 317 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 317 EQGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTTCH-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999 9999999999999999999999999999999999999999999987654
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=7.2e-30 Score=241.09 Aligned_cols=211 Identities=11% Similarity=0.065 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHCCCCCCcc-hHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcC
Q 012504 84 ESIKLFDEMLKTGLRPDNF-TYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEM 162 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 162 (462)
.+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|++||..+|++||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4455667777777665543 57888899999999999999999999999999999999999988887765431
Q ss_pred CCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHH
Q 012504 163 PVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTA 242 (462)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 242 (462)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|+.
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhhcc----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 012504 243 LVEMYSKCGHVEKAFKVFNLMR----EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL 316 (462)
Q Consensus 243 l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 316 (462)
+|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.+++++|++.|..|+..||+.++..|...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999997 4788999999999999999999999999999999999999999999888764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-29 Score=239.95 Aligned_cols=185 Identities=13% Similarity=0.137 Sum_probs=175.5
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcC---------chhHHHHHHHHHHhCCCCcc
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLL---------IGIGGSVHSLIFKVGLDSDK 136 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 136 (462)
...++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+. +++|.++|++|...|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987654 67899999999999999999
Q ss_pred chHhHHHHHHHhcCChhHHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 012504 137 YIGNTLLRMYAACKEIDVAKAVFEEMP----VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSAC 212 (462)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 212 (462)
.+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999986 5799999999999999999999999999999999999999999999999
Q ss_pred hcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 012504 213 TSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC 250 (462)
Q Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (462)
++.|++++|.+++++|.+.|..|+..+|+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.9e-25 Score=210.78 Aligned_cols=386 Identities=10% Similarity=-0.067 Sum_probs=301.4
Q ss_pred hhcCCHHHHHHHhccCCC-CCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHH
Q 012504 45 SLSISLHFTRSLFNNLPV-TPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSV 123 (462)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~-~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 123 (462)
...|++++|...|+++.. .|+..+|..+..++.+.|++++|++.++.+.+.++ .+...+..+..++...|++++|...
T Consensus 17 ~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344588888888877642 27888888888888888888888888888887642 2456777888888888888888888
Q ss_pred HHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHH--------------------------------------hcCC--
Q 012504 124 HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVF--------------------------------------EEMP-- 163 (462)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~--------------------------------------~~~~-- 163 (462)
++.+.+.+. ++......++..+........+.+.+ ....
T Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 888887763 33333333443333322222211111 1110
Q ss_pred -------CC-ChhhHHHHHHHHHc---CCChhHHHHHHHHhHH-----CCCC--------CCHHHHHHHHHHHhcccchH
Q 012504 164 -------VR-DVVSWSSMIAGFVA---CDSPSDALKVFHRMKL-----ANES--------PNSVTLVSLVSACTSLINVR 219 (462)
Q Consensus 164 -------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------p~~~~~~~l~~~~~~~~~~~ 219 (462)
.| +...+......+.. .|++++|...|+++.+ .... .+...+..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 01 13444445554554 8999999999999887 3112 23457778888999999999
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+|...++++.+.... ...+..+..++...|++++|...++++.+ .+..++..+...+...|++++|...++++.+
T Consensus 255 ~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 255 GAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999988633 88889999999999999999999998875 3567899999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC--
Q 012504 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN-- 370 (462)
Q Consensus 297 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-- 370 (462)
... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++.. .++
T Consensus 333 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 333 LDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp TCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred hCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 643 35678888999999999999999999999874 344577889999999999999999999988732 222
Q ss_pred --HHHHHHHHHHHHH---cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 371 --AVILRSFLGACRN---HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 371 --~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
...+..+...+.. .|++ +.|...++++.+..|+++.++..++.+|.+.|++++|...+++..+.++.
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENF-IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhhhhhcCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 4488889999999 9999 99999999999999999999999999999999999999999999876654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.7e-23 Score=198.10 Aligned_cols=345 Identities=9% Similarity=-0.043 Sum_probs=221.8
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHH
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLL 143 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (462)
.+..+|..+...+.+.|++++|+.+|+.+.+.. +.+...+..+..++...|++++|...++.+.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345567777777777777777777777777643 2256666667777777777777777777777664 22344555566
Q ss_pred HHHHhcCChhHHHHHHhcCCCC---Ch---hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 144 RMYAACKEIDVAKAVFEEMPVR---DV---VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
.+|.+.|++++|...|+++... +. .++..+...+.. ..+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 6666666666666666555432 11 333333322100 011122334556667
Q ss_pred hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 012504 218 VRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKM 294 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 294 (462)
+++|...++++.+.. +.+..++..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|...|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777766654 44566666677777777777777777776653 35566777777777777777777777777
Q ss_pred HHCCCCCC-HHHHHHH------------HHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCCHHHHH
Q 012504 295 IQTGLKPD-SISFSAI------------LSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 295 ~~~~~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~ 359 (462)
... .|+ ...+..+ ...+...|++++|...|+.+.....-.|. ...+..+..++.+.|++++|.
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 654 233 3333333 66777888888888888888764111111 346777788888888888888
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH------------HHhhcC-----
Q 012504 360 HIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS------------VSSLSG----- 420 (462)
Q Consensus 360 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g----- 420 (462)
..++++.. +.+...|..+..+|...|++ +.|...++++.+..|+++.++..++. .|...|
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMY-DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 88887632 34677888888888888888 88888888888888888877777773 344445
Q ss_pred CHHHHHHHHHH-HhcCCC
Q 012504 421 NWDTAAELMVA-INQKGL 437 (462)
Q Consensus 421 ~~~~A~~~~~~-~~~~~~ 437 (462)
+.+++.+.+++ ..+..+
T Consensus 395 ~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp CTTHHHHHHHHHHHHSCG
T ss_pred CHHHHHHHHHHHHHHhCC
Confidence 55666777775 334333
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.4e-23 Score=196.93 Aligned_cols=363 Identities=10% Similarity=-0.019 Sum_probs=238.3
Q ss_pred chhhhhhHh-hhhhcCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHH
Q 012504 34 NTCIISRFI-LTSLSISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKA 110 (462)
Q Consensus 34 ~~~~~~~ll-~~~~~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 110 (462)
+...+..+. .+...|++++|...|+++. .+.+..+|..+...+...|++++|++.|+.+.+.+.. +...+..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 444555554 4455679999999998764 2257888999999999999999999999999987533 57788889999
Q ss_pred hhhhcCchhHHHHHHHHHHhCCCCcc---chHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHH
Q 012504 111 CGRCLLIGIGGSVHSLIFKVGLDSDK---YIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDAL 187 (462)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (462)
+...|++++|...++.+.+..+ .+. ..+..++..+... .+..+...+...|++++|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999987642 233 5555555442211 1222333445556666666
Q ss_pred HHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--
Q 012504 188 KVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE-- 265 (462)
Q Consensus 188 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 265 (462)
..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.+|...|++++|...|+++.+
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666655532 2345555556666666666666666666665543 34455666666666666666666666665542
Q ss_pred C-ChhhHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhccCcHHHHHHHHH
Q 012504 266 K-NLQSWTIM------------ISGLADNGRGNYAISLFAKMIQTGLKPD-----SISFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 266 ~-~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
| +...+..+ +..+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 22233322 67778888888888888888774 333 3366777777888888888888888
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH------------HHHcC-----ChH
Q 012504 328 EMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGA------------CRNHG-----QVL 388 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~------------~~~~~-----~~~ 388 (462)
.+... .+.+...|..+..+|...|++++|.+.++++.. .| +...+..+..+ |...| +.
T Consensus 320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~- 396 (450)
T 2y4t_A 320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK- 396 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT-
T ss_pred HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH-
Confidence 87753 233577788888888888888888888887632 33 34555555422 22333 45
Q ss_pred HHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHhhcCCHHH
Q 012504 389 YLDDNLGKL-LLKLEPELGA----------NYVLAASVSSLSGNWDT 424 (462)
Q Consensus 389 ~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 424 (462)
+++.+.+++ +.+..|+... .+..+..+|...|+.+.
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 666777776 6677776542 34445555555555443
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-23 Score=201.85 Aligned_cols=397 Identities=8% Similarity=-0.087 Sum_probs=310.2
Q ss_pred HHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchh
Q 012504 8 TLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIE 84 (462)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~ 84 (462)
..+-..|+++.|...++.+++.. |+...+..+. .+...|++++|...|++.. .+.+..+|..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence 44555689999999999999886 6777777777 5566679999999998763 22456789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHh----------------------------------
Q 012504 85 SIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKV---------------------------------- 130 (462)
Q Consensus 85 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------------- 130 (462)
|+..|+.+.+.+. ++......++..+........+.+.+..+...
T Consensus 92 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 9999999998763 34555555555444333222222222111100
Q ss_pred -CC---------CCccchHhHHHHHHHh---cCChhHHHHHHhcCCC----------------C-ChhhHHHHHHHHHcC
Q 012504 131 -GL---------DSDKYIGNTLLRMYAA---CKEIDVAKAVFEEMPV----------------R-DVVSWSSMIAGFVAC 180 (462)
Q Consensus 131 -~~---------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~~~ 180 (462)
.. +.+...+..+...+.. .|++++|...|+++.. + +..++..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 00 0112333334444443 8999999999988654 1 345788889999999
Q ss_pred CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 012504 181 DSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVF 260 (462)
Q Consensus 181 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 260 (462)
|++++|...|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...+
T Consensus 251 ~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999998864 447888889999999999999999999998875 556778999999999999999999999
Q ss_pred hhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC
Q 012504 261 NLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP 337 (462)
Q Consensus 261 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 337 (462)
++..+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.....-.+
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 98763 356789999999999999999999999998863 33567888889999999999999999999986522222
Q ss_pred c----hhHHHHHHHHHHh---cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 338 T----MEHYGCMVDMLGR---AGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 338 ~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
+ ...+..+...+.. .|++++|.+.++++.. +.+...+..+...+...|++ +.|...++++.+..|+++..
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI-DEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSSHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhccccHHH
Confidence 2 3488999999999 9999999999998742 34678888999999999999 99999999999999998877
Q ss_pred HHHH
Q 012504 409 YVLA 412 (462)
Q Consensus 409 ~~~l 412 (462)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.9e-22 Score=193.99 Aligned_cols=250 Identities=12% Similarity=0.001 Sum_probs=207.8
Q ss_pred CChhHHHHHHHHhHHCCCCCC--------HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 181 DSPSDALKVFHRMKLANESPN--------SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 181 ~~~~~a~~~~~~m~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
|++++|..+|+++.+.. |+ ..++..+...+...|++++|...++.+.+.. |+...+..+...+...|+
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcC
Confidence 47889999999988753 43 2246666777888999999999999999875 447888899999999999
Q ss_pred hHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 253 VEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 253 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
+++|...++++.+ .+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998864 456789999999999999999999999999864 224678888999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----C----CCHHHHHHHHHHHHHc----------CChHHHH
Q 012504 330 ARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----E----PNAVILRSFLGACRNH----------GQVLYLD 391 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----~~~~~~~~l~~~~~~~----------~~~~~~a 391 (462)
... .+.+...+..+...+...|++++|.+.|+++.. . .....+......+... |++ +.|
T Consensus 371 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~A 447 (537)
T 3fp2_A 371 KLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF-NAA 447 (537)
T ss_dssp HHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH-HHH
T ss_pred HHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH-HHH
Confidence 874 344577889999999999999999999988732 1 1223344556677777 999 999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 392 DNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
...++++.+..|+++.++..++.+|.+.|++++|.+.|++..+....
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999998876544
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.6e-20 Score=169.39 Aligned_cols=325 Identities=9% Similarity=-0.043 Sum_probs=195.8
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHH
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRM 145 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (462)
+..|..+...+...|++++|++.|+.+.+... .+...+..+..++...|++++|...++.+.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45566777777788888888888888776532 245666667777777777777777777777664 2234555556666
Q ss_pred HHhcCChhHHHHHHhcCCCCCh------hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchH
Q 012504 146 YAACKEIDVAKAVFEEMPVRDV------VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVR 219 (462)
Q Consensus 146 ~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 219 (462)
+...|++++|...|++....++ ..+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666655543221 11211110000 001122245556666666
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+|...++++.+.. +.+...+..+..++...|++++|...+++..+ .+..++..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7766666666654 44556666666777777777777777766553 2445666667777777777777777777666
Q ss_pred CCCCCCHHHHH------------HHHHHhhccCcHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHHHhcCCHHHHHHHH
Q 012504 297 TGLKPDSISFS------------AILSACSHLGLVDEGKNYFDEMARVYNIKPTM--EHYGCMVDMLGRAGLIEEAYHII 362 (462)
Q Consensus 297 ~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~ 362 (462)
... .+...+. .+...+...|++++|...++++.....-.+.. ..+..+..++...|++++|.+.+
T Consensus 217 ~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 217 LDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 421 1222222 22445666777777777777776541111111 23445666777777777777777
Q ss_pred HhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 363 RNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 363 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
+++.. +.+...+..+...+...|++ +.|...++++.+..|+++.++..+..++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMY-DEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 76532 23566777777777777777 777777777777777777666666655443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=8.6e-20 Score=166.87 Aligned_cols=307 Identities=12% Similarity=-0.002 Sum_probs=219.5
Q ss_pred chHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHH
Q 012504 102 FTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFV 178 (462)
Q Consensus 102 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 178 (462)
..+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.. .+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345555556666666666666666666654 22344555556666666666666666655441 24445555555566
Q ss_pred cCCChhHHHHHHHHhHHCCCCC---C-HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChH
Q 012504 179 ACDSPSDALKVFHRMKLANESP---N-SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVE 254 (462)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~~~p---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (462)
..|++++|...|++..+. .| + ...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 666666666666655543 23 1 111111111100 111233467889999999
Q ss_pred HHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 255 KAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 255 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
+|.+.++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999864 456789999999999999999999999999863 34677889999999999999999999999987
Q ss_pred hcCCCCchhHHH------------HHHHHHHhcCCHHHHHHHHHhCCC-CCC-H----HHHHHHHHHHHHcCChHHHHHH
Q 012504 332 VYNIKPTMEHYG------------CMVDMLGRAGLIEEAYHIIRNMPT-EPN-A----VILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 332 ~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~----~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
.. +.+...+. .+...+.+.|++++|...++++.. .|+ . ..+..+...+...|++ +.|..
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~ 293 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP-VEAIR 293 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH-HHHHH
Confidence 52 22333332 336678999999999999998743 233 2 3355677889999999 99999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 394 LGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.++++.+..|+++.++..++.++...|++++|.+.+++..+..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999887654
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=7.3e-21 Score=184.15 Aligned_cols=391 Identities=9% Similarity=-0.033 Sum_probs=277.0
Q ss_pred HHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhH
Q 012504 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIES 85 (462)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a 85 (462)
.+-..|+++.|...++.+++.. +.+...+..+. .+...|++++|.+.|++.. .+.+..+|..+...+...|++++|
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 112 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 112 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHH
Confidence 3444467777777777777664 22444444444 3444567777777776652 114566677777777777888888
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhC------CCCccc----------------------
Q 012504 86 IKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVG------LDSDKY---------------------- 137 (462)
Q Consensus 86 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~---------------------- 137 (462)
++.|+.+ .. .|+.. ...+..+...+....+...++.+.... ..|+..
T Consensus 113 ~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (537)
T 3fp2_A 113 MFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS 187 (537)
T ss_dssp HHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCC
T ss_pred HHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcc
Confidence 8777533 22 22211 112233334444455666666554321 011111
Q ss_pred --------hHhHHHHHHHh--------cCChhHHHHHHhcCCCC---C-------hhhHHHHHHHHHcCCChhHHHHHHH
Q 012504 138 --------IGNTLLRMYAA--------CKEIDVAKAVFEEMPVR---D-------VVSWSSMIAGFVACDSPSDALKVFH 191 (462)
Q Consensus 138 --------~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~---~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 191 (462)
....+...+.. .|++++|..+|+++... + ..++..+...+...|++++|...|+
T Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11222222211 24788999999888643 2 2256777788999999999999999
Q ss_pred HhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CCh
Q 012504 192 RMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNL 268 (462)
Q Consensus 192 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~ 268 (462)
+..+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...|++..+ .+.
T Consensus 268 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 268 ESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 99885 4668888899999999999999999999999886 55788899999999999999999999998864 356
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC----chhHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP----TMEHYGC 344 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ 344 (462)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-.+ ....+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 789999999999999999999999999873 33566888889999999999999999999876521111 1223445
Q ss_pred HHHHHHhc----------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 345 MVDMLGRA----------GLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 345 l~~~~~~~----------~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
+...+.+. |++++|...|+++.. +.+...+..+...+...|++ +.|...++++.+..|.......
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI-DEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCcHHHHH
Confidence 56777777 999999999998743 44678899999999999999 9999999999999998875543
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.87 E-value=9.2e-21 Score=170.90 Aligned_cols=296 Identities=13% Similarity=0.037 Sum_probs=141.5
Q ss_pred hhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhh
Q 012504 35 TCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRC 114 (462)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 114 (462)
....+.|| ...|++++|.+++++++. | .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...
T Consensus 6 ~~a~~~ll--~~~~~ld~A~~fae~~~~-~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 6 TSAVQVLI--EHIGNLDRAYEFAERCNE-P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH--HHccCHHHHHHHHHhCCC-h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence 33455666 667789999999999965 4 49999999999999999999999653 5888999999999999
Q ss_pred cCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhH
Q 012504 115 LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMK 194 (462)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 194 (462)
|++++|..+++..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|..+...|...|++++|..+|..+
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 9999999988877764 44577889999999999999999988864 67789999999999999999999999977
Q ss_pred HCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHH
Q 012504 195 LANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIM 274 (462)
Q Consensus 195 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 274 (462)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....+
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~l 213 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEEL 213 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHH
Confidence 37899999999999999999999988 368899999999999999999988777655 455556678
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--cCcHHHHHHHHHHHHHhcCCCC------chhHHHHHH
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH--LGLVDEGKNYFDEMARVYNIKP------TMEHYGCMV 346 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~ 346 (462)
+..|.+.|++++|..+++...... +-....|+.+.-.|++ .+++.+..+.|..- -+++| +...|..++
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999987653 3345566666655554 45555555555432 25555 467899999
Q ss_pred HHHHhcCCHHHHHHHHHhCC
Q 012504 347 DMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~ 366 (462)
-.|.+.++++.|....-+-+
T Consensus 290 ~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHST
T ss_pred HHHHhhchHHHHHHHHHhCC
Confidence 99999999999988776654
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.4e-19 Score=163.46 Aligned_cols=280 Identities=9% Similarity=-0.024 Sum_probs=149.7
Q ss_pred HhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc
Q 012504 139 GNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSL 215 (462)
Q Consensus 139 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 215 (462)
+..+...+...|++++|.++|+++.. .+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 33333444444444444444443321 122233334444444444455555544444431 22334444444444444
Q ss_pred c-chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHH
Q 012504 216 I-NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 216 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
| ++++|...++++.+.. +.+...+..+..++...|++++|...+++..+ .+...+..+...+...|++++|...+
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4 4555555555544433 22344455555555555555555555555442 12344555556666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN-------IKPTMEHYGCMVDMLGRAGLIEEAYHIIRN 364 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 364 (462)
+++.+.. +.+...+..+...+...|++++|...++++..... .+....++..+..+|...|++++|.+.+++
T Consensus 183 ~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 183 SQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6665542 22345556666666666666666666666654311 122345666677777777777777777766
Q ss_pred CCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH-hhcCCH
Q 012504 365 MPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS-SLSGNW 422 (462)
Q Consensus 365 ~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 422 (462)
+.. +.+...+..+...+...|++ +.|...++++.+..|+++..+..++.++ ...|+.
T Consensus 262 a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 262 ALVLIPQNASTYSAIGYIHSLMGNF-ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHSTTCSHHHHHHHHHHHHHTCH-HHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHhhCccchHHHHHHHHHHHHhccH-HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 532 23456666677777777777 7777777777777777777777777766 344543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.3e-19 Score=161.03 Aligned_cols=267 Identities=11% Similarity=-0.006 Sum_probs=232.4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 165 RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888889999999999999999998764 3455667778888899999999999999999876 56778899999
Q ss_pred HHHHhcC-ChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 012504 245 EMYSKCG-HVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320 (462)
Q Consensus 245 ~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (462)
..+...| ++++|...|++..+ .+...|..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999875 3467899999999999999999999999998642 24566777888999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHHcCChHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-----------EPNAVILRSFLGACRNHGQVLY 389 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 389 (462)
+|...++++.+ ..+.+...+..+...+...|++++|...++++.. +.....+..+...+...|++ +
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~ 253 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY-A 253 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH-H
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH-H
Confidence 99999999986 3345578899999999999999999999987632 23457888999999999999 9
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.|...++++.+..|+++.++..++.++...|++++|.+.+++..+..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999998877654
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=2e-17 Score=157.88 Aligned_cols=351 Identities=11% Similarity=-0.036 Sum_probs=183.2
Q ss_pred CCcccHHHHHHHHHh----CCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhh----hcCchhHHHHHHHHHHhCCCCc
Q 012504 64 PPLFAYNTLIRAYAK----TSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR----CLLIGIGGSVHSLIFKVGLDSD 135 (462)
Q Consensus 64 ~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 135 (462)
.+..++..+...|.. .+++++|+..|+...+.| +...+..+-..+.. .++.++|..+++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 344455555555554 555555666555555543 33444444444444 555555555555555543 3
Q ss_pred cchHhHHHHHHHh----cCChhHHHHHHhcCCCC-ChhhHHHHHHHHHc----CCChhHHHHHHHHhHHCCCCCCHHHHH
Q 012504 136 KYIGNTLLRMYAA----CKEIDVAKAVFEEMPVR-DVVSWSSMIAGFVA----CDSPSDALKVFHRMKLANESPNSVTLV 206 (462)
Q Consensus 136 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 206 (462)
...+..|...|.. .+++++|...|++.... +..++..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3344445555554 45555665555554432 34455555555554 455666666666555542 344444
Q ss_pred HHHHHHhc----ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh----cCChHHHHHHHhhccCC-ChhhHHHHHHH
Q 012504 207 SLVSACTS----LINVRAGESIHSYAVVNGLELDVALGTALVEMYSK----CGHVEKAFKVFNLMREK-NLQSWTIMISG 277 (462)
Q Consensus 207 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~ 277 (462)
.+...+.. .++.++|...+++..+.+ +...+..+...|.. .+++++|...|++..+. +...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555544 455666666665555543 23344445555554 45566666666554432 33444455555
Q ss_pred HHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-----CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 278 LAD----NGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL-----GLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 278 ~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
|.. .+++++|...|++..+.| +...+..+...|... +++++|...|++..+. + +...+..+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 555 555666666666555443 233444444444443 5566666666655542 1 23344455555
Q ss_pred HHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh---
Q 012504 349 LGRAG---LIEEAYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL--- 418 (462)
Q Consensus 349 ~~~~~---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 418 (462)
|...| ++++|.+.|++.....++..+..+...|.. .++. +.|..+++++.+.+ ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDE-QQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 55434 455566666555433455555555555555 5555 66666666655542 34455556666555
Q ss_pred -cCCHHHHHHHHHHHhcCC
Q 012504 419 -SGNWDTAAELMVAINQKG 436 (462)
Q Consensus 419 -~g~~~~A~~~~~~~~~~~ 436 (462)
.+++++|...|++..+.+
T Consensus 415 ~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 556666666666555544
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=2.7e-19 Score=164.41 Aligned_cols=280 Identities=11% Similarity=-0.045 Sum_probs=222.1
Q ss_pred HhcCChhHHHH-HHhcCCC--C-----ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccch
Q 012504 147 AACKEIDVAKA-VFEEMPV--R-----DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINV 218 (462)
Q Consensus 147 ~~~~~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 218 (462)
...|++++|.. .|++... + +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 7776542 1 34567788888999999999999999988864 45677888888889999999
Q ss_pred HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC---hhhHHH---------------HHHHHHH
Q 012504 219 RAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN---LQSWTI---------------MISGLAD 280 (462)
Q Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~---------------l~~~~~~ 280 (462)
++|...++++.+.. +.+..++..++.+|...|++++|.+.++++.+.+ ...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999988876 5577888889999999999999999998876422 122211 1333448
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 281 NGRGNYAISLFAKMIQTGLKP-DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
.|++++|...++++.+..... +..++..+...+...|++++|...++++... .+.+...+..+...+...|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999864321 4778899999999999999999999999874 2445788999999999999999999
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHhhcCCHHHHH
Q 012504 360 HIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL-----------GANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 360 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 426 (462)
+.++++.. +.+...+..+..++...|++ +.|...++++.+..|++ ..++..++.+|...|++++|.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAH-REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99998743 45678899999999999999 99999999999988877 678999999999999999999
Q ss_pred HHHHH
Q 012504 427 ELMVA 431 (462)
Q Consensus 427 ~~~~~ 431 (462)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 98874
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=9.6e-18 Score=160.15 Aligned_cols=352 Identities=9% Similarity=-0.006 Sum_probs=292.1
Q ss_pred cCCHHHHHHHhccCCCCCCcccHHHHHHHHHh----CCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhh----hcCch
Q 012504 47 SISLHFTRSLFNNLPVTPPLFAYNTLIRAYAK----TSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR----CLLIG 118 (462)
Q Consensus 47 ~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~ 118 (462)
.++++.|...|++.....+..++..|...|.. .+++++|++.|++..+.| +...+..+-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 45999999999877555678889999999998 999999999999999875 56667777777777 78999
Q ss_pred hHHHHHHHHHHhCCCCccchHhHHHHHHHh----cCChhHHHHHHhcCCC-CChhhHHHHHHHHHc----CCChhHHHHH
Q 012504 119 IGGSVHSLIFKVGLDSDKYIGNTLLRMYAA----CKEIDVAKAVFEEMPV-RDVVSWSSMIAGFVA----CDSPSDALKV 189 (462)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 189 (462)
+|...++...+.| +...+..|...|.. .++.++|.+.|++..+ .+..++..+...|.. .++.++|++.
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999999998876 45667778888887 7899999999988764 477888888888888 8999999999
Q ss_pred HHHhHHCCCCCCHHHHHHHHHHHhc----ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh----cCChHHHHHHHh
Q 012504 190 FHRMKLANESPNSVTLVSLVSACTS----LINVRAGESIHSYAVVNGLELDVALGTALVEMYSK----CGHVEKAFKVFN 261 (462)
Q Consensus 190 ~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 261 (462)
|++..+.| +...+..+...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 99998864 55667777777765 789999999999998865 44566677788887 899999999999
Q ss_pred hccCC-ChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---cHHHHHHHHHHHHHh
Q 012504 262 LMREK-NLQSWTIMISGLADN-----GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG---LVDEGKNYFDEMARV 332 (462)
Q Consensus 262 ~~~~~-~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 332 (462)
+..+. +...+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|..+|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 98754 567788888888887 89999999999999875 4556666777776645 899999999999874
Q ss_pred cCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCC
Q 012504 333 YNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~ 404 (462)
.+...+..|...|.. .+++++|.+.|++.....++..+..+...|.. .++. +.|...|+++.+.+|+
T Consensus 361 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 361 ----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDY-VQAWAWFDTASTNDMN 435 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHHHCC
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCCCC
Confidence 457788889999988 89999999999998666678888889999988 8999 9999999999998854
Q ss_pred ---CCchHHHHHHHHhh
Q 012504 405 ---LGANYVLAASVSSL 418 (462)
Q Consensus 405 ---~~~~~~~l~~~~~~ 418 (462)
++.....++.++..
T Consensus 436 ~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 436 LFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHTTSCHH
T ss_pred CcCCHHHHHHHHhcCHh
Confidence 66666666665544
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.4e-17 Score=147.01 Aligned_cols=272 Identities=11% Similarity=0.019 Sum_probs=217.0
Q ss_pred HHHHhcCChhHHHHHHhcCCCCCh----hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchH
Q 012504 144 RMYAACKEIDVAKAVFEEMPVRDV----VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVR 219 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 219 (462)
+-....|+++.|+..++.....++ .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 345567999999999988765442 3445678899999999999986654 2 3567778888889999999999
Q ss_pred hHHHHHHHHHHhCC-CchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012504 220 AGESIHSYAVVNGL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTG 298 (462)
Q Consensus 220 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 298 (462)
+|.+.++++...+. +.+...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+..
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 99999999988764 44567778888999999999999999999 5677899999999999999999999999999864
Q ss_pred CCCCHHHH---HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHH
Q 012504 299 LKPDSISF---SAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVI 373 (462)
Q Consensus 299 ~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 373 (462)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.. +.++.+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 553211 12233444568999999999999984 456788999999999999999999999999733 447888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
+..++..+...|+..+.+.++++++.+..|+++.+. ....+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999999999999993347899999999999998443 3344555666655443
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.2e-17 Score=158.86 Aligned_cols=369 Identities=11% Similarity=-0.042 Sum_probs=244.4
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHC-----C--CCC-CcchHHHHHHHhhhhcCchhHHHHHHHHHHhCC---
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-----G--LRP-DNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGL--- 132 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 132 (462)
..+..||.|...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...+++..+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 45667999999999999999999999987642 1 123 345788899999999999999999998876421
Q ss_pred ---CC-ccchHhHHHHHHHh--cCChhHHHHHHhcCCC--C-ChhhHHHHHHH---HHcCCChhHHHHHHHHhHHCCCCC
Q 012504 133 ---DS-DKYIGNTLLRMYAA--CKEIDVAKAVFEEMPV--R-DVVSWSSMIAG---FVACDSPSDALKVFHRMKLANESP 200 (462)
Q Consensus 133 ---~~-~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p 200 (462)
.+ ...++..+..++.. .+++++|+..|++..+ | +...+..+... +...++.++|++.+++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 11 22345555555554 4578999999998762 3 45555555444 445688899999999887753 33
Q ss_pred CHHHHHHHHHHHh----cccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHH
Q 012504 201 NSVTLVSLVSACT----SLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTI 273 (462)
Q Consensus 201 ~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ 273 (462)
+...+..+...+. ..++.++|...+++..... +.+..++..+...|...|++++|...+++..+ | +..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 5555555554443 3467889999999998876 66778888999999999999999999998874 3 4456666
Q ss_pred HHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC
Q 012504 274 MISGLAD-------------------NGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN 334 (462)
Q Consensus 274 l~~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 334 (462)
+...|.. .+.+++|...+++..+.. +.+..++..+...+...|++++|...|++.... .
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~ 364 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-E 364 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-C
Confidence 6655532 233567888888877753 224557788888999999999999999998864 3
Q ss_pred CCCch--hHHHHHHH-HHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 335 IKPTM--EHYGCMVD-MLGRAGLIEEAYHIIRNMP-TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 335 ~~~~~--~~~~~l~~-~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
..+.. ..+..+.. .+...|++++|++.|++.. ..|+..... +.. ..+..++++..+.+|+++.++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~-~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMK-DKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHH-HHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHH-HHHHHHHHHHHHhCCCCHHHHH
Confidence 22221 12333333 2346789999999998763 234432221 223 5567778888889999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCCCccCCccceE
Q 012504 411 LAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWV 446 (462)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 446 (462)
.++.+|...|++++|++.|++..+.+...+.+.+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999887766666654
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=6.2e-19 Score=161.84 Aligned_cols=261 Identities=11% Similarity=-0.044 Sum_probs=214.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888999999999999999988763 4567788889999999999999999999998876 556788899999
Q ss_pred HHHhcCChHHHHHHHhhccCCCh-------------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 012504 246 MYSKCGHVEKAFKVFNLMREKNL-------------QSWTIMISGLADNGRGNYAISLFAKMIQTGLK-PDSISFSAILS 311 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~ 311 (462)
+|...|++++|...|+++.+.++ ..+..+...+...|++++|...++++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999998875222 22344578899999999999999999987432 25788999999
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLY 389 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 389 (462)
.+...|++++|...++++.+. .+.+..+|..+..+|.+.|++++|.+.|+++.. +.+..++..+..+|...|++ +
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY-R 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-H
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH-H
Confidence 999999999999999999874 344688999999999999999999999998743 34588899999999999999 9
Q ss_pred HHHHHHHHHHhcCCC------------CCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 390 LDDNLGKLLLKLEPE------------LGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
+|...++++.+..|+ +..++..++.++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998776 366899999999999999999887764
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=2.4e-16 Score=152.01 Aligned_cols=395 Identities=10% Similarity=0.006 Sum_probs=278.9
Q ss_pred chhhhhhHh-hhhhcCCHHHHHHHhccCCCC-C-CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHH
Q 012504 34 NTCIISRFI-LTSLSISLHFTRSLFNNLPVT-P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKA 110 (462)
Q Consensus 34 ~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~-~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 110 (462)
+...|..++ . ...|+++.|+.+|++.-.. | +...|...+..+.+.|++++|..+|++++.. .|+...|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 556677666 2 2346889999888876432 3 4556888888888899999999999998875 3666666666543
Q ss_pred h-hhhcCchhHHH----HHHHHHHh-CCCC-ccchHhHHHHHHHh---------cCChhHHHHHHhcCCC-CCh---hhH
Q 012504 111 C-GRCLLIGIGGS----VHSLIFKV-GLDS-DKYIGNTLLRMYAA---------CKEIDVAKAVFEEMPV-RDV---VSW 170 (462)
Q Consensus 111 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~-~~~---~~~ 170 (462)
. ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 34577777665 66666543 4443 34566666666554 6788899999988764 221 233
Q ss_pred HHHHHH---H----------HcCCChhHHHHHHHHhH------HCC---CCCCH--------HHHHHHHHHHhc----cc
Q 012504 171 SSMIAG---F----------VACDSPSDALKVFHRMK------LAN---ESPNS--------VTLVSLVSACTS----LI 216 (462)
Q Consensus 171 ~~l~~~---~----------~~~~~~~~a~~~~~~m~------~~~---~~p~~--------~~~~~l~~~~~~----~~ 216 (462)
...... + .+.+++..|..++..+. +.. ++|+. ..|...+..... .+
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 322211 0 12345677777776532 111 24432 334443332221 12
Q ss_pred ch----HhHHHHHHHHHHhCCCchHhHHHHHHHHHHh-------cCChH-------HHHHHHhhccC---C-ChhhHHHH
Q 012504 217 NV----RAGESIHSYAVVNGLELDVALGTALVEMYSK-------CGHVE-------KAFKVFNLMRE---K-NLQSWTIM 274 (462)
Q Consensus 217 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~---~-~~~~~~~l 274 (462)
+. +.+..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++..+ | +...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 22 36777888888874 5678888888888876 79987 89999998874 3 46789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHh
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPD-S-ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM-LGR 351 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 351 (462)
+..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|+.++|..+|++..+. .+.+...|...+.. +..
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHH
Confidence 99999999999999999999985 454 2 47888888888899999999999999863 22233344333222 346
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc----hHHHHHHHHhhcCCHHHH
Q 012504 352 AGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA----NYVLAASVSSLSGNWDTA 425 (462)
Q Consensus 352 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A 425 (462)
.|++++|..+|+.... +.+...|..++..+.+.|+. +.|..+|+++....|.++. +|...+......|+.+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~-~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH-HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999998743 34678899999999999999 9999999999998877665 777788888889999999
Q ss_pred HHHHHHHhcCCC
Q 012504 426 AELMVAINQKGL 437 (462)
Q Consensus 426 ~~~~~~~~~~~~ 437 (462)
..+++++.+..+
T Consensus 483 ~~~~~r~~~~~p 494 (530)
T 2ooe_A 483 LKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHCc
Confidence 999998876544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=8.1e-18 Score=154.48 Aligned_cols=258 Identities=10% Similarity=-0.004 Sum_probs=139.6
Q ss_pred hHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC---CCChhhHHHHHHHHHc
Q 012504 103 TYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP---VRDVVSWSSMIAGFVA 179 (462)
Q Consensus 103 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 179 (462)
.+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++. ..+..++..+...+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554442 2233444445555555555555555555443 2244555666666666
Q ss_pred CCChhHHHHHHHHhHHCCCCCCHHHHHH---------------HHHHHhcccchHhHHHHHHHHHHhCCCc-hHhHHHHH
Q 012504 180 CDSPSDALKVFHRMKLANESPNSVTLVS---------------LVSACTSLINVRAGESIHSYAVVNGLEL-DVALGTAL 243 (462)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 243 (462)
.|++++|.+.|+++..... .+...+.. .+..+...|++++|...++++.+..... +..++..+
T Consensus 145 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 6666666666666655421 11111110 1222236667777777777776654211 45666666
Q ss_pred HHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (462)
..+|...|++++|...|+++.+ .+..+|..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 6667777777777766666542 234566666666666666666666666666542 223456666666666666666
Q ss_pred HHHHHHHHHHHhcCCC---------CchhHHHHHHHHHHhcCCHHHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIK---------PTMEHYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
+|...|+++.....-. ....+|..+..+|...|++++|..+++
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 6666666665431100 013455556666666666666655554
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=3.1e-18 Score=154.39 Aligned_cols=260 Identities=9% Similarity=-0.059 Sum_probs=197.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMY 247 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (462)
..+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666667777777777777766542 3355566666677777777777777777777664 44566667777777
Q ss_pred HhcCChHHHHHHHhhccCC---ChhhHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012504 248 SKCGHVEKAFKVFNLMREK---NLQSWTIM--------------IS-GLADNGRGNYAISLFAKMIQTGLKPDSISFSAI 309 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 309 (462)
...|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 7777777777777766532 12222222 22 3677789999999999998864 3367788889
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 387 (462)
...+...|++++|...++++... .+.+...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999874 244578899999999999999999999988732 34678899999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 388 LYLDDNLGKLLLKLEPE------------LGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
+.|...++++.+..|+ ++.++..++.++.+.|++++|..++++..
T Consensus 257 -~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 -DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp -HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred -HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999988 67889999999999999999999987544
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=8.9e-19 Score=158.05 Aligned_cols=281 Identities=9% Similarity=0.001 Sum_probs=88.4
Q ss_pred hhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 012504 113 RCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHR 192 (462)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 192 (462)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+++++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344555555555554 12235556666666666666666666442 3444555566666666666666665554
Q ss_pred hHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHH
Q 012504 193 MKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWT 272 (462)
Q Consensus 193 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (462)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 4442 2334555556666666666666555553 244456666666666666666666666654 3566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 012504 273 IMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA 352 (462)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (462)
.++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.....++..|.+.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHC
Confidence 6666666666666666666655 14556666666666666666664333221 12222233455666666
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHhhcCCHH
Q 012504 353 GLIEEAYHIIRNMPT--EPNAVILRSFLGACRNH--GQVLYLDDNLGKLLLKLEP-----ELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 353 ~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~ 423 (462)
|++++|..+++.... +.....|..|...|++- ++. .+..+.|.....+.| .++..|..+...|..-++++
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~-~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM-REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHH-HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 666666666655422 23344555554444433 122 222222222222333 44556666666666666666
Q ss_pred HHHHH
Q 012504 424 TAAEL 428 (462)
Q Consensus 424 ~A~~~ 428 (462)
.|...
T Consensus 300 ~A~~t 304 (449)
T 1b89_A 300 NAIIT 304 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=3.5e-17 Score=144.45 Aligned_cols=248 Identities=10% Similarity=0.048 Sum_probs=204.2
Q ss_pred HHHHcCCChhHHHHHHHHhHHCCCCCCH--HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 175 AGFVACDSPSDALKVFHRMKLANESPNS--VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
+.....|+++.|++.++..... .|+. .....+.+++...|+++.|...++. . -+|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 4456689999999999887553 3443 3556678899999999999876644 2 36778888999999999999
Q ss_pred hHHHHHHHhhccC----C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 012504 253 VEKAFKVFNLMRE----K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 253 ~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
.++|++.++++.. | +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998752 3 456778888999999999999999987 4567788899999999999999999999
Q ss_pred HHHHhcCCCCchhH---HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 012504 328 EMARVYNIKPTMEH---YGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 328 ~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
++.+. .|+... ...++..+...|++++|..+|+++.. +.+...++.+..++...|++ ++|...++++.+..
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW-EAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHC
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Confidence 99875 355321 12233444556899999999999843 46788999999999999999 99999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCHHH-HHHHHHHHhcCCCc
Q 012504 403 PELGANYVLAASVSSLSGNWDT-AAELMVAINQKGLN 438 (462)
Q Consensus 403 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 438 (462)
|+++.++..++.++...|+.++ +.++++++.+.++.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999976 57899988876654
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=6.2e-16 Score=149.14 Aligned_cols=366 Identities=10% Similarity=0.015 Sum_probs=266.5
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHH
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLL 143 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (462)
-+..+|..++. +.+.|++++|..+|+.+.+.. +-+...|...+..+.+.|+++.|..+|+.++... |+...|...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 37778999998 478999999999999999863 3356678899999999999999999999999875 5666777666
Q ss_pred HHH-HhcCChhHHHH----HHhcCC------CCChhhHHHHHHHHHc---------CCChhHHHHHHHHhHHCCCCCCHH
Q 012504 144 RMY-AACKEIDVAKA----VFEEMP------VRDVVSWSSMIAGFVA---------CDSPSDALKVFHRMKLANESPNSV 203 (462)
Q Consensus 144 ~~~-~~~~~~~~A~~----~~~~~~------~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~ 203 (462)
... ...|+.+.|.+ +|++.. .++...|...+....+ .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45677777665 666542 2356678777776554 688999999999988731111123
Q ss_pred HHHHHHHH---H----------hcccchHhHHHHHHHHHH------hC---CCch--------HhHHHHHHHHHHhc---
Q 012504 204 TLVSLVSA---C----------TSLINVRAGESIHSYAVV------NG---LELD--------VALGTALVEMYSKC--- 250 (462)
Q Consensus 204 ~~~~l~~~---~----------~~~~~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~l~~~~~~~--- 250 (462)
.|...... . ...+++..|..++..+.. .. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 33322211 1 134566777777665332 11 2333 24555555433322
Q ss_pred -CCh----HHHHHHHhhccC---CChhhHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHH
Q 012504 251 -GHV----EKAFKVFNLMRE---KNLQSWTIMISGLAD-------NGRGN-------YAISLFAKMIQTGLKPDSISFSA 308 (462)
Q Consensus 251 -~~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~ 308 (462)
++. +.+..+|++... .+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...+..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 367778887764 356788888888775 79987 89999999986312335678888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCc-h-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHH-HHH
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPT-M-EHYGCMVDMLGRAGLIEEAYHIIRNMPTE-P-NAVILRSFLGA-CRN 383 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~l~~~-~~~ 383 (462)
++..+.+.|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|.++|++.... | +...+...... +..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 888899999999999999999863 454 3 58999999999999999999999987542 2 23333332222 346
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 384 HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 384 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.|+. +.|..+|+++.+..|+++.++..++..+.+.|+.++|..+|++....+.
T Consensus 404 ~~~~-~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 404 SKDK-SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred cCCh-hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 8999 9999999999999999999999999999999999999999999988754
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=5.7e-17 Score=148.70 Aligned_cols=255 Identities=12% Similarity=0.039 Sum_probs=140.4
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC---CCChhhHHHHHHHHHcCCC
Q 012504 106 FVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP---VRDVVSWSSMIAGFVACDS 182 (462)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 182 (462)
.+...+.+.|++++|...++.+++.. +.+..++..+..++...|++++|+..|++.. ..+..+|..+...|...|+
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 33333333344444444444333332 1123334444444444444444444444433 1234455556666666666
Q ss_pred hhHHHHHHHHhHHCCCCCC-----------HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC-chHhHHHHHHHHHHhc
Q 012504 183 PSDALKVFHRMKLANESPN-----------SVTLVSLVSACTSLINVRAGESIHSYAVVNGLE-LDVALGTALVEMYSKC 250 (462)
Q Consensus 183 ~~~a~~~~~~m~~~~~~p~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 250 (462)
+++|+..|+++.+.. |+ ...+..+...+...|++++|...++++.+.... .+..++..+..+|...
T Consensus 149 ~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 149 QQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp HHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 666666666665431 22 122333456677777777777777777776421 1566777777777777
Q ss_pred CChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 012504 251 GHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 251 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
|++++|.+.|++..+ .+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777776653 345667777777777777777777777777652 2235567777777777777777777777
Q ss_pred HHHHhcCCC----------CchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012504 328 EMARVYNIK----------PTMEHYGCMVDMLGRAGLIEEAYHIIRN 364 (462)
Q Consensus 328 ~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 364 (462)
++.+...-. .+...|..+..++...|+.+.+..+.++
T Consensus 306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 766531100 0245566666666666776666666554
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=5.9e-15 Score=148.52 Aligned_cols=374 Identities=10% Similarity=0.019 Sum_probs=278.0
Q ss_pred HHHhhcChhHHHHHHHHHHHhC--CCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHH
Q 012504 9 LIQLSKTVHHLHQLHTLFLKTS--LDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESI 86 (462)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~ 86 (462)
.+...|.+.+|.++++..+-.+ +.-+....+.++++....+........++... -+ ...+...+...|.+++|.
T Consensus 994 af~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~-~d---~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDN-YD---APDIANIAISNELFEEAF 1069 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhh-cc---HHHHHHHHHhCCCHHHHH
Confidence 3345578888999988888332 11233455555444444466666666666653 22 445778888899999999
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCC
Q 012504 87 KLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRD 166 (462)
Q Consensus 87 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 166 (462)
.+|++... .....+.++ -..+++++|.++.+.. -+..+|..+..++...|++++|++.|.+. .|
T Consensus 1070 ~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1070 AIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred HHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 99998521 112222232 2678899998888754 24678889999999999999999999775 67
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHH
Q 012504 167 VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEM 246 (462)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (462)
...|..++..+.+.|++++|.++|...++.. +++...+.++.+|++.++++....+. + .++...+..+...
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 7888899999999999999999999877754 34333345888899998888644442 2 3455677779999
Q ss_pred HHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 247 YSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..+|..+..+|...|++..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999985 58999999999999999999999876 25688998999999999999988866
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhcC
Q 012504 327 DEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNH--GQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~~ 402 (462)
..+ ..++..+..++..|.+.|.+++|+.+++.... +.....|..+...|.+. ++. .++.++|..-....
T Consensus 1274 l~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl-mEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1274 LHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM-REHLELFWSRVNIP 1346 (1630)
T ss_pred Hhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH-HHHHHHHHHhcccc
Confidence 543 23556777899999999999999999987633 23455666666666654 344 55555665555544
Q ss_pred C-----CCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 403 P-----ELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 403 p-----~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
| .+...|..+...|.+.|+++.|....
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4 56678999999999999999998543
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=3.3e-16 Score=141.03 Aligned_cols=264 Identities=10% Similarity=-0.000 Sum_probs=170.6
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHH
Q 012504 65 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLR 144 (462)
Q Consensus 65 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (462)
+...|..+...+...|++++|+.+|+.+.+.... +...+..+..++...|++++|...++.+.+.. +.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~------- 90 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIA------- 90 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHH-------
Confidence 4455666677777777777777777777665322 45556666666666677777777666666553 22333
Q ss_pred HHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHH-------------H-HH
Q 012504 145 MYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVS-------------L-VS 210 (462)
Q Consensus 145 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------------l-~~ 210 (462)
++..+...+...|++++|.+.++++.+.. +.+...+.. + ..
T Consensus 91 ------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 91 ------------------------VHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------
T ss_pred ------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 34444444455555555555555544431 111111111 1 22
Q ss_pred -HHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHH
Q 012504 211 -ACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNY 286 (462)
Q Consensus 211 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 286 (462)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+ .+..++..+...+...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 3667788888888888888775 44667777788888888888888888877653 345677777888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHHhcCCH
Q 012504 287 AISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-----------TMEHYGCMVDMLGRAGLI 355 (462)
Q Consensus 287 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~ 355 (462)
|...++++.+.. +.+...+..+...+...|++++|...++++.... ... +...+..+..++.+.|++
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 888888877653 2346677777778888888888888888776541 111 356677777778888888
Q ss_pred HHHHHHHHhC
Q 012504 356 EEAYHIIRNM 365 (462)
Q Consensus 356 ~~A~~~~~~~ 365 (462)
++|..++++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 8887777665
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=2.1e-13 Score=137.55 Aligned_cols=341 Identities=12% Similarity=0.020 Sum_probs=243.2
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCch
Q 012504 4 RHIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 83 (462)
+.+..++...+.+++|.+++++.. ......+.++ ...+++++|.++.++.. +..+|..+..++...|+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi--e~i~nldrAiE~Aervn---~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI--EHIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH--HHHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCHH
Confidence 345556666678888888888752 2223334455 55668888888888773 4667888889999999999
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 84 ESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
+|++.|.+. -|...|..++.++.+.|++++|.+++...++.. ++....+.++.+|++.+++++...+. .
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h
Confidence 999998664 267788888899999999999999998877765 33333345888888888888655543 3
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHH
Q 012504 164 VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTAL 243 (462)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 243 (462)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 456667777888888899999999999874 37888888888889999888888766 345788888
Q ss_pred HHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh--ccCcHHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS--HLGLVDE 321 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~ 321 (462)
..+|...|++..|...... ...++..+..++..|.+.|.+++|+.+++...... +-....|+-+...++ +.++..+
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 8888888888888887765 44456667788888999999999999997776543 223335554554444 4455555
Q ss_pred HHHHHHHHHHhcCCCC------chhHHHHHHHHHHhcCCHHHHHHHHHhCC--------------CCCCHHHHHHHHHHH
Q 012504 322 GKNYFDEMARVYNIKP------TMEHYGCMVDMLGRAGLIEEAYHIIRNMP--------------TEPNAVILRSFLGAC 381 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------------~~~~~~~~~~l~~~~ 381 (462)
+.+.|..-. +++| +...|..++-.|.+.|+++.|....-+-. ...++..|...+..|
T Consensus 1335 hlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A 1335 HLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 1411 (1630)
T ss_pred HHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHH
Confidence 555555332 4444 46778888888999999998884433321 124566666666666
Q ss_pred HHcC
Q 012504 382 RNHG 385 (462)
Q Consensus 382 ~~~~ 385 (462)
....
T Consensus 1412 l~~~ 1415 (1630)
T 1xi4_A 1412 LEFK 1415 (1630)
T ss_pred HhhC
Confidence 6433
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.1e-15 Score=132.58 Aligned_cols=219 Identities=11% Similarity=-0.027 Sum_probs=154.8
Q ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC------C----hhhHHH
Q 012504 204 TLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK------N----LQSWTI 273 (462)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~----~~~~~~ 273 (462)
.+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...+++..+. + ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444555555555555555555555554 44555555555666666666666665555421 1 356677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
+...+...|++++|...|+++... .|+. ..+...|++++|...++.+.. ..+.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 777777888888888888877774 3442 235566778888888888875 22334667778888888888
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 354 LIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 354 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
++++|...++++.. +.+...+..+...+...|++ +.|...++++.+..|+++.++..++.++...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888887632 34577888888888888998 8999999999888888888888889999999999999988888
Q ss_pred HhcCC
Q 012504 432 INQKG 436 (462)
Q Consensus 432 ~~~~~ 436 (462)
..+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 77654
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1e-14 Score=138.62 Aligned_cols=366 Identities=9% Similarity=-0.050 Sum_probs=232.9
Q ss_pred CCchhhhhhHh-hhhhcCCHHHHHHHhccC-----------CCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHC----
Q 012504 32 DHNTCIISRFI-LTSLSISLHFTRSLFNNL-----------PVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT---- 95 (462)
Q Consensus 32 ~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~-----------~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---- 95 (462)
......||.+- .+...|+.++|++.|++. .......+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 34455677665 556678899988888653 12134568999999999999999999999887652
Q ss_pred -C-CCC-CcchHHHHHHHhhhh--cCchhHHHHHHHHHHhCCCCccchHhHHHHH---HHhcCChhHHHHHHhcCC---C
Q 012504 96 -G-LRP-DNFTYPFVVKACGRC--LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRM---YAACKEIDVAKAVFEEMP---V 164 (462)
Q Consensus 96 -g-~~p-~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~---~ 164 (462)
+ ..+ ...++.....++... +++++|...|+..++..+. +...+..+..+ +...++.++|++.+++.. .
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 111 234455444444443 5789999999999988532 44455555444 345677888888887754 3
Q ss_pred CChhhHHHHHHHHHc----CCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH
Q 012504 165 RDVVSWSSMIAGFVA----CDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG 240 (462)
Q Consensus 165 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 240 (462)
.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 355666666555443 467889999999987753 4567788889999999999999999999999876 5566677
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012504 241 TALVEMYSKC-------------------GHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTG 298 (462)
Q Consensus 241 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 298 (462)
..+..+|... +.++.|...+++..+ .+..++..+...|...|++++|...|++..+..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7777666432 235667777776653 345688899999999999999999999999865
Q ss_pred CCCCHH--HHHHHHH-HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHH
Q 012504 299 LKPDSI--SFSAILS-ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP--TEPNAVI 373 (462)
Q Consensus 299 ~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~ 373 (462)
..|... .+..+.. .....|+.++|+..|++..+ +.|+........ ..+.++++... .+.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHH
Confidence 443321 2222222 23467899999999999875 355533322222 22333333321 2346778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
|..+..+|...|+. +.|...|+++++.+|..|.+...++
T Consensus 433 ~~~LG~~~~~~g~~-~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 433 LHVLAFLQELNEKM-QQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHC-C------------------------
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999 9999999999999998887766554
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=1.3e-15 Score=128.42 Aligned_cols=196 Identities=13% Similarity=0.006 Sum_probs=151.7
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAIL 310 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 310 (462)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777788888888888888888888764 345678888888888899999999998888763 22456777888
Q ss_pred HHhhcc-----------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 012504 311 SACSHL-----------GLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFL 378 (462)
Q Consensus 311 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~ 378 (462)
.++... |++++|...+++..+. -+.+...+..+..+|...|++++|+..|+++.. ..+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999864 233477888999999999999999999988621 16788899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.++...|++ ++|...++++.+..|+++.++..++.++...|++++|++.+++..
T Consensus 159 ~~~~~~g~~-~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRL-DEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999999999999999999998764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9e-16 Score=133.13 Aligned_cols=237 Identities=10% Similarity=-0.075 Sum_probs=189.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC--ch----HhHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE--LD----VALGT 241 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 241 (462)
..+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++...+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 467778888888999999999999888776 77788888888899999999999999888775311 11 57888
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDE 321 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 321 (462)
.+..++...|++++|...|++..+.+.. ...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 8899999999999999999887752221 245667788999999999988752 2234577888888999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 322 GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLL 399 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 399 (462)
|...++++... .+.+...+..+..+|...|++++|.+.++++.. +.+...+..+..++...|++ +.|...++++.
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~ 234 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY-ASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 99999999874 244578889999999999999999999988742 34578888899999999999 99999999999
Q ss_pred hcC------CCCCchHHHHHHH
Q 012504 400 KLE------PELGANYVLAASV 415 (462)
Q Consensus 400 ~~~------p~~~~~~~~l~~~ 415 (462)
+.. |++..++..+..+
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhChhhcCCCchHHHHHHHHHh
Confidence 988 7776666655543
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=5.9e-15 Score=129.35 Aligned_cols=242 Identities=11% Similarity=-0.062 Sum_probs=190.7
Q ss_pred HcCCChhHHHHHHHHhHHCCCC---CCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChH
Q 012504 178 VACDSPSDALKVFHRMKLANES---PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVE 254 (462)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (462)
...|++++|+..|+++.+.... .+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457888999999988875321 145677788888899999999999999998876 556788889999999999999
Q ss_pred HHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 255 KAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 255 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
+|.+.|++..+ .+..++..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998874 35678999999999999999999999999885 34444444445555777999999999988876
Q ss_pred hcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 332 VYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE-PN-----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 332 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
. .+++...+. ++..+...++.++|.+.++++... |. ...+..+...+...|++ +.|...++++.+..|++
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL-DSATALFKLAVANNVHN 248 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCTT
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCchh
Confidence 4 344444444 677788888999999999887543 21 57788899999999999 99999999999999877
Q ss_pred CchHHHHHHHHhhcCCHHHHHHHH
Q 012504 406 GANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
... .+.++...|++++|++.+
T Consensus 249 ~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHH---HHHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHHhhHHHH
Confidence 543 466778889999998876
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=6.9e-17 Score=157.46 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=97.4
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhcc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMR-------EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISF 306 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 306 (462)
..-..+|+++|++|++.|++++|.++|.+|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445678888888888888888888886654 478888888888888888888888888888888888888888
Q ss_pred HHHHHHhhccCc-HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 307 SAILSACSHLGL-VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 307 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
+++|.++++.|+ .++|.++|++|... |+.||..+|++++....+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHH
Confidence 888888888887 47788888888887 88888888888876665543
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=159.82 Aligned_cols=121 Identities=9% Similarity=0.096 Sum_probs=108.7
Q ss_pred cchHhHHHHHHHhcCChhHHHHHHhcCC-------CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 012504 136 KYIGNTLLRMYAACKEIDVAKAVFEEMP-------VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL 208 (462)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 208 (462)
..+|++||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997653 689999999999999999999999999999999999999999999
Q ss_pred HHHHhcccch-HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHH
Q 012504 209 VSACTSLINV-RAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKA 256 (462)
Q Consensus 209 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 256 (462)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 9999999985 78999999999999999999999998777664333333
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=8.3e-14 Score=130.94 Aligned_cols=372 Identities=7% Similarity=-0.037 Sum_probs=179.9
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCH---HHHHHHhccCCCCCCcccHHHHHHHHHhCC-
Q 012504 6 IETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISL---HFTRSLFNNLPVTPPLFAYNTLIRAYAKTS- 80 (462)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~---~~A~~~~~~~~~~~~~~~y~~li~~~~~~g- 80 (462)
+...+-..|+++.|.++++...+.|-. + .+..+- ++...|+. ++|...|++.... +..++..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~-~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS-E--AQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-T--GGGTCC-----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCC
Confidence 445555668999999999998888732 2 222222 22334444 8899999888764 7778888877666555
Q ss_pred ----CchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchh---HHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh-
Q 012504 81 ----CSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGI---GGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI- 152 (462)
Q Consensus 81 ----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 152 (462)
++++|+..|+...+.|. ...+..+...|...+..+. +.+.+......| +......|...|...+.+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 67889999999888663 3356666666665554333 344444444444 344555666666666633
Q ss_pred ---hHHHHHHhcCCCCChhhHHHHHHHHHcCC---ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc----cchHhHH
Q 012504 153 ---DVAKAVFEEMPVRDVVSWSSMIAGFVACD---SPSDALKVFHRMKLANESPNSVTLVSLVSACTSL----INVRAGE 222 (462)
Q Consensus 153 ---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~ 222 (462)
+.+..+++.....++.++..|...|...| +.++|++.|++..+.| .++...+..+...|... ++.++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 33444444444445556666666666666 6666666666665554 23333333444444332 3444555
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCC
Q 012504 223 SIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISG-L--ADNGRGNYAISLFAKMIQTGL 299 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~ 299 (462)
..|+.. ...++..+..+... + ...+++++|.+.|++..+.|
T Consensus 238 ~~~~~a-----------------------------------a~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 238 ALLEKI-----------------------------------APGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp HHHHHH-----------------------------------GGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHH-----------------------------------cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence 554444 41223333444333 2 23455555555555555543
Q ss_pred CCCHHHHHHHHHHhhccC-----cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC
Q 012504 300 KPDSISFSAILSACSHLG-----LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPTEPN 370 (462)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 370 (462)
+...+..+...|. .| ++++|..+|++.. +-+...+..|...|.. ..++++|.+.|++.....+
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 3334444444443 23 5555555555543 2234444445544444 2256666666655543333
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 371 AVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 371 ~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
......|...|.. ..+. ..|..+++++.+.++.+.......+......++..+|.++.++-.
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~-~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDP-LNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCH-HHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444444444442 2355 666666666665544332222222222222344555555555443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=3.8e-14 Score=133.28 Aligned_cols=345 Identities=10% Similarity=-0.032 Sum_probs=236.9
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCc---hhHHHHHHHHHHhCCCCccchHhHHHHHHH
Q 012504 71 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLI---GIGGSVHSLIFKVGLDSDKYIGNTLLRMYA 147 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (462)
.+...+.+.|++++|+++|+...+.| +...+..+-..+...|+. ++|..+|+...+. ++..+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999998876 344455555666667777 8999999988855 4455566666555
Q ss_pred hcC-----ChhHHHHHHhcCCCC-ChhhHHHHHHHHHcCCChh---HHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccch
Q 012504 148 ACK-----EIDVAKAVFEEMPVR-DVVSWSSMIAGFVACDSPS---DALKVFHRMKLANESPNSVTLVSLVSACTSLINV 218 (462)
Q Consensus 148 ~~~-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 218 (462)
..+ ++++|...|++...+ +..++..|...|...+..+ ++.+.+......| +......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 555 778999999887654 5567888888888776544 4455555555444 345566677777777766
Q ss_pred HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC---ChHHHHHHHhhccCCC---hhhHHHHHHHHHHc----CChHHHH
Q 012504 219 RAGESIHSYAVVNGLELDVALGTALVEMYSKCG---HVEKAFKVFNLMREKN---LQSWTIMISGLADN----GRGNYAI 288 (462)
Q Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~----~~~~~a~ 288 (462)
+.+......+.+.-...++..+..|..+|...| +.++|++.|++..+.+ ...+..+...|... +++++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 655555444443333344458888999999999 8999999999877533 33446677777655 7999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-h--hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-----CHHHHHH
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSA-C--SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG-----LIEEAYH 360 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~ 360 (462)
.+|++.. .| +...+..+... + ...+++++|..+|++..+. + +...+..|...|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 33 44555555555 3 4689999999999999874 4 5667778888887 55 9999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCCHHHHHHHHHHH
Q 012504 361 IIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL----SGNWDTAAELMVAI 432 (462)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 432 (462)
.|++.. +.++..+..|...|.. ..+. ++|..+++++.+. .++.....|+.+|.. ..+..+|...|+..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~-~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYP-QKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCH-HHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCH-HHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 999998 7788888888877776 3488 9999999998874 456788999999875 46999999999999
Q ss_pred hcCCCc
Q 012504 433 NQKGLN 438 (462)
Q Consensus 433 ~~~~~~ 438 (462)
.+.|..
T Consensus 385 ~~~g~~ 390 (452)
T 3e4b_A 385 KAQDTP 390 (452)
T ss_dssp HTTCCH
T ss_pred HHCCCH
Confidence 888754
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=1.3e-14 Score=127.04 Aligned_cols=244 Identities=11% Similarity=-0.039 Sum_probs=132.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCch--HhHHHHHHHHHH
Q 012504 171 SSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELD--VALGTALVEMYS 248 (462)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 248 (462)
......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+....++ ...+..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334445555555555555555555432 12233455555555555555555555555554221111 122455555555
Q ss_pred hcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 012504 249 KCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
..|++++|.+.|++..+ .+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555442 233455556666666666666666666555441 22334444444122233466666666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCC---HHHHHHHHHhCCC----CCC------HHHHHHHHHHHHHcCChHHHHH
Q 012504 326 FDEMARVYNIKPTMEHYGCMVDMLGRAGL---IEEAYHIIRNMPT----EPN------AVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~----~~~------~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
++++.+. .+.+...+..+..++...|+ +++|...++++.. .|+ ...|..+...|...|++ +.|.
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~ 241 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK-VKAD 241 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH-HHHH
Confidence 6666543 12234555555666665555 5555555544421 122 24666778888888999 9999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 393 NLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
..++++.+..|+++.+...+.......
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 999999999998887777666555443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=1e-13 Score=121.33 Aligned_cols=224 Identities=11% Similarity=-0.021 Sum_probs=110.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc----ccchHhHHHHHHHHHHhCCCchHhHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTS----LINVRAGESIHSYAVVNGLELDVALGT 241 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (462)
+..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555666666666666666665552 233444445555555 555555555555555543 344444
Q ss_pred HHHHHHHh----cCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--
Q 012504 242 ALVEMYSK----CGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH-- 315 (462)
Q Consensus 242 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 315 (462)
.+...|.. .+++++|+..|+ +..+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~-------------------------------~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYS-------------------------------KACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHH-------------------------------HHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCHHHHHHHHH-------------------------------HHHHcC---CccHHHHHHHHHHcCC
Confidence 45555554 555555555554 444432 33344444444444
Q ss_pred --cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 012504 316 --LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPTEPNAVILRSFLGACRN----HG 385 (462)
Q Consensus 316 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 385 (462)
.+++++|...|++..+. + +...+..+...|.. .+++++|.+.|++.....+...+..+...|.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 44445555444444432 1 23334444444444 44555555555444322334444445555555 55
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCCHHHHHHHHHHHhcCC
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSSL----SGNWDTAAELMVAINQKG 436 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 436 (462)
++ ++|...++++.+.+| +..+..++.+|.. .|++++|++.+++..+.+
T Consensus 201 ~~-~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NF-KEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CH-HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cH-HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 55 555555555555433 3344555555555 555555555555554443
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=2.9e-14 Score=120.12 Aligned_cols=195 Identities=16% Similarity=0.012 Sum_probs=121.4
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666666666777777777777666542 3345566666666666777777777777666664 445556666666
Q ss_pred HHHhc-----------CChHHHHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 246 MYSKC-----------GHVEKAFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 246 ~~~~~-----------~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
++... |++++|+..|++..+ | +...|..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 777777777776653 2 34567777777777777777777777777765 56667777777
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
++...|++++|...|++..+. -+.+...+..+..++.+.|++++|.+.+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777788887777777753 23346667777777777777777777776653
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=2.6e-13 Score=118.80 Aligned_cols=229 Identities=14% Similarity=-0.082 Sum_probs=153.3
Q ss_pred ccchHhHHHHHHHhcCChhHHHHHHhcCCCC-ChhhHHHHHHHHHc----CCChhHHHHHHHHhHHCCCCCCHHHHHHHH
Q 012504 135 DKYIGNTLLRMYAACKEIDVAKAVFEEMPVR-DVVSWSSMIAGFVA----CDSPSDALKVFHRMKLANESPNSVTLVSLV 209 (462)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 209 (462)
+...+..+...+...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4567778888999999999999999988755 56788889999999 999999999999998875 678888888
Q ss_pred HHHhc----ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh----cCChHHHHHHHhhccCC-ChhhHHHHHHHHHH
Q 012504 210 SACTS----LINVRAGESIHSYAVVNGLELDVALGTALVEMYSK----CGHVEKAFKVFNLMREK-NLQSWTIMISGLAD 280 (462)
Q Consensus 210 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~ 280 (462)
..+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+. +...+..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 99988 999999999999998865 45566666666666 56666666655554432 23334444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCHH
Q 012504 281 NGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AGLIE 356 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 356 (462)
. ....+++++|...|++..+. .+...+..+...|.. .++++
T Consensus 159 ~-------------------------------~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 159 G-------------------------------RGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp T-------------------------------SSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred C-------------------------------CCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 0 00044555555555554432 123344445555555 55555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCC
Q 012504 357 EAYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 357 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
+|.+.|++.....+...+..+...|.. .++. ++|...++++.+.+|++
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~-~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNE-KQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCS-TTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCH-HHHHHHHHHHHHcCCHH
Confidence 555555554332234555555666666 6666 66777777766666543
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=4e-14 Score=123.82 Aligned_cols=232 Identities=9% Similarity=-0.085 Sum_probs=189.1
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--CCh----hhHHHHHH
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--KNL----QSWTIMIS 276 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~ 276 (462)
..+......+...|++++|...++++.+.. +.+...+..+..+|...|++++|+..+++..+ ++. .+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778889999999999999999875 45666888899999999999999999998875 232 34889999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHH
Q 012504 277 GLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIE 356 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (462)
.+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999863 235678899999999999999999999999852 2334777777873444456999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHhhcCCHH
Q 012504 357 EAYHIIRNMPT--EPNAVILRSFLGACRNHGQ---VLYLDDNLGKLLLKLE---PEL-----GANYVLAASVSSLSGNWD 423 (462)
Q Consensus 357 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 423 (462)
+|.+.|+++.. +.+...+..+...+...|+ . +.|...++++.+.. |+. ..++..++.+|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQ-GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSS-CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhh-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998743 3457778888888888888 7 88999999998764 442 257888999999999999
Q ss_pred HHHHHHHHHhcCCCcc
Q 012504 424 TAAELMVAINQKGLNK 439 (462)
Q Consensus 424 ~A~~~~~~~~~~~~~~ 439 (462)
+|.+.+++..+..+..
T Consensus 239 ~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 239 KADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccH
Confidence 9999999998876543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=2.1e-13 Score=117.79 Aligned_cols=133 Identities=17% Similarity=0.062 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDML 349 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (462)
+..+...+...|++++|.+.++++...+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...|
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHH
Confidence 33334444444444444444444433111221 223334444444444444444444444432 112233444444444
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 350 GRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
...|++++|...++++.. +.+...+..+...+...|+. +.|...++++.+..|+++
T Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR-DTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTSH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHCCCCH
Confidence 444444444444444321 12333444444444444444 445555555444444443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=1.3e-13 Score=116.71 Aligned_cols=197 Identities=13% Similarity=-0.005 Sum_probs=110.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
...+..++..+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.... +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34444555555555555555555554432 233455555555555666666666666555542 22344555555556
Q ss_pred hcc-CcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH
Q 012504 314 SHL-GLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLY 389 (462)
Q Consensus 314 ~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 389 (462)
... |++++|...++++... +..|+ ...+..+..++...|++++|...++++.. +.+...+..+...+...|++ +
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL-G 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-H
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH-H
Confidence 666 6666666666665541 22222 44555566666666666666666655422 22355556666666666666 6
Q ss_pred HHHHHHHHHHhcCC-CCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 390 LDDNLGKLLLKLEP-ELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 390 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.|...++++.+..| +++..+..++..+...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 66666666666666 555556566666666666666666666655433
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=8.6e-14 Score=120.23 Aligned_cols=199 Identities=9% Similarity=-0.012 Sum_probs=170.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677778888888888888888887763 356788888999999999999999999998863 33677888889999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
...|++++|..+++++... +..| +...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++ +.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY-VP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-HH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH-HH
Confidence 9999999999999999862 3445 467888899999999999999999998743 34678889999999999999 99
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 391 DDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
|...++++.+..|++...+..++.++...|++++|.++++++.+..+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999876643
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=2e-14 Score=123.44 Aligned_cols=201 Identities=10% Similarity=0.042 Sum_probs=85.8
Q ss_pred HHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCC
Q 012504 207 SLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGR 283 (462)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 283 (462)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+ .+..++..+...+...|+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 33333444444444444444444322 22333444444444444444444444444331 123344444444555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 012504 284 GNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++
T Consensus 107 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 107 YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544432 123334444445555555555555555555432 12234444445555555555555555554
Q ss_pred hCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHH
Q 012504 364 NMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLA 412 (462)
Q Consensus 364 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 412 (462)
++.. +.+..++..+...+...|++ +.|...++++.+..|+++.++..+
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYKENR-EKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHccCH-HHHHHHHHHHHccCcchHHHHHHH
Confidence 4321 12344455555555555555 555555555555555554444433
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=2.4e-13 Score=115.07 Aligned_cols=204 Identities=12% Similarity=-0.019 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHH
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLA 279 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 279 (462)
..+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.+++..+ .+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344455555555566666666665555543 33445555666666666666666666665542 24456666777777
Q ss_pred Hc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 280 DN-GRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 280 ~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
.. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHH
Confidence 77 777777777777776323333 456667777777788888888888877753 23346677778888888888888
Q ss_pred HHHHHHhCCC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 358 AYHIIRNMPT--E-PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 358 A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
|.+.++++.. + .+...+..+...+...|+. +.+..+++.+.+..|+++....
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA-QAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHhCCCCHHHHH
Confidence 8888877632 3 4566666677777888888 8888888888888888775544
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=9.8e-14 Score=126.54 Aligned_cols=247 Identities=8% Similarity=0.043 Sum_probs=199.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc-hHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN-VRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
+..+|..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|+ +++|...++++++.. +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34578888888999999999999999988853 3456788888888999996 999999999999886 56788899999
Q ss_pred HHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCcHH
Q 012504 245 EMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH-LGLVD 320 (462)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~ 320 (462)
.++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998874 45678999999999999999999999999987432 56788888888877 55546
Q ss_pred HH-----HHHHHHHHHhcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcC-------
Q 012504 321 EG-----KNYFDEMARVYNIKPTMEHYGCMVDMLGRAG--LIEEAYHIIRNMPTE-PNAVILRSFLGACRNHG------- 385 (462)
Q Consensus 321 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~------- 385 (462)
+| +..+++.... -+-+...|..+..++...| ++++|.+.+.++... .+...+..+...|...|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 5778887763 2334778888888888888 688999988887333 45677888888888764
Q ss_pred --ChHHHHHHHHHHH-HhcCCCCCchHHHHHHHHhh
Q 012504 386 --QVLYLDDNLGKLL-LKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 386 --~~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 418 (462)
.. ++|..+++++ .+.+|.....|..++..+..
T Consensus 331 ~~~~-~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDIL-NKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHH-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 25 8899999999 89999988888877776654
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=2.2e-14 Score=123.16 Aligned_cols=200 Identities=13% Similarity=0.091 Sum_probs=158.5
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456777888899999999999999999865 356788889999999999999999999998863 336778888999
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLY 389 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 389 (462)
.+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++.. +.+...+..+...+...|++ +
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML-D 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-H
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH-H
Confidence 999999999999999999874 244677889999999999999999999998743 34678888999999999999 9
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.|...++++.+..|+++.++..++.+|...|++++|...++++.+..+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999999999999999999999999876554
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=5.8e-14 Score=122.96 Aligned_cols=240 Identities=10% Similarity=-0.024 Sum_probs=159.5
Q ss_pred hCCCchhHHHHHHHHHHCCCCC---CcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhH
Q 012504 78 KTSCSIESIKLFDEMLKTGLRP---DNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDV 154 (462)
Q Consensus 78 ~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (462)
..|++++|++.|+.+.+..... +...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3567778888888777653211 34556666777777788888888888777765 2355677777777888888888
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 155 AKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 155 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
|...|++... .+..++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888777652 35677888888888888888888888888774 354444444555556678888888888777766
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012504 232 GLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN-------LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI 304 (462)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 304 (462)
. +++...+. ++..+...++.++|...+.+..+.+ ..++..+...|...|++++|...|+++.... |+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 4 33444443 6666777777788888887776543 3566677777777777777777777777642 322
Q ss_pred HHHHHHHHhhccCcHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
+.....++...|++++|...+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 112233445566666666554
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=3.1e-14 Score=132.63 Aligned_cols=263 Identities=11% Similarity=-0.017 Sum_probs=172.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH----HHHHHHHHHHhcccchHhHHHHHHHHHHh----C-CCchHhHH
Q 012504 170 WSSMIAGFVACDSPSDALKVFHRMKLANESPNS----VTLVSLVSACTSLINVRAGESIHSYAVVN----G-LELDVALG 240 (462)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 240 (462)
+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...+++..+. + .+.....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3344556666777777777777766642 1122 34556666666777777777777666543 1 12234566
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccCC---------ChhhHHHHHHHHHHcCC-----------------hHHHHHHHHHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMREK---------NLQSWTIMISGLADNGR-----------------GNYAISLFAKM 294 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m 294 (462)
..+...|...|++++|...+++..+. ...++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66777777777777777777665431 12356667777777777 77777777765
Q ss_pred HHC----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 295 IQT----GLKP-DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 295 ~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.+. +..+ ...++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 1111 1236666777778888888888888877653211111 236777888888888888888888776
Q ss_pred CC----C----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 366 PT----E----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------GANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 366 ~~----~----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
.. . ....++..+...+...|++ +.|...++++.+..+.. ..++..++.+|...|++++|.+++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEF-NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 32 1 1245677778888888888 88888888888764332 33777888888889999999888887
Q ss_pred Hhc
Q 012504 432 INQ 434 (462)
Q Consensus 432 ~~~ 434 (462)
..+
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=8.2e-14 Score=127.05 Aligned_cols=230 Identities=10% Similarity=0.001 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC-hHHHHHHHhhccC---CChhhHHHHHHH
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH-VEKAFKVFNLMRE---KNLQSWTIMISG 277 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~l~~~ 277 (462)
...|..+...+...|++++|...++++++.. +.+..+|+.+..++...|+ +++|+..|++..+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467777888889999999999999999986 6678899999999999997 9999999999874 356889999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-cCCHH
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR-AGLIE 356 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 356 (462)
+...|++++|+..|+++++... -+...|..+..++...|++++|+..++++.+. -+-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998743 36778999999999999999999999999974 23457889999999999 66657
Q ss_pred HH-----HHHHHhCCC--CCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC-------
Q 012504 357 EA-----YHIIRNMPT--EPNAVILRSFLGACRNHG--QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG------- 420 (462)
Q Consensus 357 ~A-----~~~~~~~~~--~~~~~~~~~l~~~~~~~~--~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 420 (462)
+| ++.+++... +.+...|..+...+...| +. ++|...++++ +..|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~-~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY-PNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC-HHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccch-HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 477776532 346788888888888888 68 8999999998 889999999999999999874
Q ss_pred --CHHHHHHHHHHH-hcCCC
Q 012504 421 --NWDTAAELMVAI-NQKGL 437 (462)
Q Consensus 421 --~~~~A~~~~~~~-~~~~~ 437 (462)
.+++|+++++++ .+.++
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 358999999998 66543
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=4.8e-14 Score=130.94 Aligned_cols=287 Identities=11% Similarity=0.005 Sum_probs=161.5
Q ss_pred chHhHHHHHHHhcCChhHHHHHHhcCCC--C-C----hhhHHHHHHHHHcCCChhHHHHHHHHhHHC----CCCC-CHHH
Q 012504 137 YIGNTLLRMYAACKEIDVAKAVFEEMPV--R-D----VVSWSSMIAGFVACDSPSDALKVFHRMKLA----NESP-NSVT 204 (462)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~ 204 (462)
..+......+...|++++|...|++... | + ..++..+...+...|++++|...+++.... +-.| ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445556666777777777777766542 2 2 235666667777777777777777765332 1111 1335
Q ss_pred HHHHHHHHhcccchHhHHHHHHHHHHhC----CC-chHhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 012504 205 LVSLVSACTSLINVRAGESIHSYAVVNG----LE-LDVALGTALVEMYSKCGH--------------------VEKAFKV 259 (462)
Q Consensus 205 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 259 (462)
+..+...+...|++++|...+++..+.. -+ ....++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 5556666667777777777776665431 00 113355666666666676 6666666
Q ss_pred HhhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCcHHHHHHH
Q 012504 260 FNLMRE-----KN----LQSWTIMISGLADNGRGNYAISLFAKMIQTGL-KPD----SISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 260 ~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
+++..+ .+ ..++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 655432 11 23456666666666777777766666654210 111 12555556666666777777666
Q ss_pred HHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHHcCChHHHHHH
Q 012504 326 FDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN----AVILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 326 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
+++......-.++ ..++..+...|...|++++|.+.+++... .++ ..++..+...|...|++ +.|..
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~ 328 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH-DQAMH 328 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH-HHHHH
Confidence 6666542111111 34555666666666776666666665421 111 34555566666666666 66666
Q ss_pred HHHHHHhcCCCCC------chHHHHHHHHhhcCCHHH
Q 012504 394 LGKLLLKLEPELG------ANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 394 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~ 424 (462)
.++++.+..+... .++..++.++...|+...
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 6666666665553 234444444444444443
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=8.3e-14 Score=125.61 Aligned_cols=265 Identities=12% Similarity=0.034 Sum_probs=191.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC----HHHHHHHHHHHhcccchHhHHHHHHHHHHh----CCC-chHhHH
Q 012504 170 WSSMIAGFVACDSPSDALKVFHRMKLANESPN----SVTLVSLVSACTSLINVRAGESIHSYAVVN----GLE-LDVALG 240 (462)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 240 (462)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566777788888888888877653 122 245667777777888888888887776543 212 235567
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE-----KN----LQSWTIMISGLADNGR--------------------GNYAISLF 291 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 291 (462)
..+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7788888888888888888877653 12 2367777888888888 88888888
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHH
Q 012504 292 AKMIQT----GLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHII 362 (462)
Q Consensus 292 ~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~ 362 (462)
++.... +..|. ...+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776542 11111 346777778888899999999999887653211111 347788888999999999999998
Q ss_pred HhCCC----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCCHHHHHHH
Q 012504 363 RNMPT----EPN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------GANYVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 363 ~~~~~----~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 428 (462)
++... .++ ..++..+...+...|++ +.|...++++.+..|.. ..++..++.+|.+.|++++|...
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY-EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 87632 122 45677788899999999 99999999998764433 34788899999999999999999
Q ss_pred HHHHhcCC
Q 012504 429 MVAINQKG 436 (462)
Q Consensus 429 ~~~~~~~~ 436 (462)
+++..+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99887653
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=2.1e-13 Score=111.64 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=137.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMV 346 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 346 (462)
+...|..+...|...|++++|++.|++..+... -+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 456778888888888888888888888887632 25667888888888888899988888888763 234466777778
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH
Q 012504 347 DMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
..+...++++.|.+.+.+... +.+...+..+...+...|++ ++|...++++.+.+|.++.++..++.+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH-DKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc-hhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888888999999888887632 34677888888999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 012504 425 AAELMVAINQKGL 437 (462)
Q Consensus 425 A~~~~~~~~~~~~ 437 (462)
|++.|++..+.++
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999887654
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=3.1e-13 Score=125.47 Aligned_cols=296 Identities=9% Similarity=-0.024 Sum_probs=176.3
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC----cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHh
Q 012504 65 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD----NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGN 140 (462)
Q Consensus 65 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (462)
....+......+...|++++|+..|+.+.+.+.. + ...+..+...+...|++++|...++.+..........
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--- 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ--- 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc---
Confidence 3444555666677777777777777777664321 2 1345555555666666666666666554331000000
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHC----CCC-CCHHHHHHHHHHHhcc
Q 012504 141 TLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLA----NES-PNSVTLVSLVSACTSL 215 (462)
Q Consensus 141 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~ 215 (462)
.....++..+...+...|++++|...+++.... +-. ....++..+...+...
T Consensus 84 -----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 84 -----------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 001223444555555555555555555554331 000 0123555566666666
Q ss_pred cc--------------------hHhHHHHHHHHHHh----CC-CchHhHHHHHHHHHHhcCChHHHHHHHhhccC-----
Q 012504 216 IN--------------------VRAGESIHSYAVVN----GL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMRE----- 265 (462)
Q Consensus 216 ~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----- 265 (462)
|+ +++|...+.+..+. +. +....++..+...|...|++++|...+++..+
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 66 66666666655442 11 11234667777788888888888888777653
Q ss_pred CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCC
Q 012504 266 KN----LQSWTIMISGLADNGRGNYAISLFAKMIQT----GLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIK 336 (462)
Q Consensus 266 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (462)
++ ..++..+...|...|++++|...+++.... +..+. ..++..+...+...|++++|...+++......-.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 11 236777788888888888888888887643 11111 3467777788888899999998888876532111
Q ss_pred Cc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----C----CCHHHHHHHHHHHHHcCCh
Q 012504 337 PT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----E----PNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 337 ~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----~~~~~~~~l~~~~~~~~~~ 387 (462)
++ ..++..+...|...|++++|.+.+++... . ....++..+...+...|+.
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 11 55777888889999999999888877521 1 1234555566666666655
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=1.7e-13 Score=129.57 Aligned_cols=208 Identities=6% Similarity=-0.058 Sum_probs=170.4
Q ss_pred hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCh-HHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012504 218 VRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHV-EKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAK 293 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (462)
++.+...++...... +.+...+..+..++...|++ ++|++.|++..+ .+..+|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555544332 44667777788888888888 888888887653 3467888888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcc---------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc--------CCHH
Q 012504 294 MIQTGLKPDSISFSAILSACSHL---------GLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA--------GLIE 356 (462)
Q Consensus 294 m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 356 (462)
..+. .|+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8875 46677888888889888 9999999999999874 234578888999999888 9999
Q ss_pred HHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 357 EAYHIIRNMPT-EP----NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 357 ~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
+|++.|++... .| +...|..+..+|...|++ ++|...++++.+..|+++..+..++.++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESY-GEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988743 34 788999999999999999 9999999999999999999999999999999999999976543
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=5.4e-13 Score=124.19 Aligned_cols=98 Identities=10% Similarity=-0.038 Sum_probs=52.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKP----TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EP----NAV 372 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~----~~~ 372 (462)
.+..+...+...|++++|...+++......-.. ...++..+...|...|++++|.+.+++... .+ ...
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 444455555555555555555555443211000 134455566666666666666666655421 01 133
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
++..+...|...|++ +.|...++++.++.+
T Consensus 345 ~~~~la~~~~~~g~~-~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGH-ERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccH-HHHHHHHHHHHHHHh
Confidence 555566666777777 777777777766543
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=123.47 Aligned_cols=232 Identities=10% Similarity=0.052 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhHHC-------CCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh------CC
Q 012504 167 VVSWSSMIAGFVACDSPSDALKVFHRMKLA-------NESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN------GL 233 (462)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 233 (462)
..++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666777777777777777777776552 11223345556666666667777777666666543 11
Q ss_pred -CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC-----------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 012504 234 -ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK-----------NLQSWTIMISGLADNGRGNYAISLFAKMIQT---- 297 (462)
Q Consensus 234 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---- 297 (462)
+....++..+...|...|++++|...+++..+. ...++..+...+...|++++|.+.++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 223445555555666666666666555544321 1123444444444455555555554444432
Q ss_pred --CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------
Q 012504 298 --GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-------- 367 (462)
Q Consensus 298 --~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------- 367 (462)
+..|. ...++..+...|...|++++|.+.++++..
T Consensus 187 ~~~~~~~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 187 LGPDDPN-----------------------------------VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp SCTTCHH-----------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCCCHH-----------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 11111 123344444445555555555544444321
Q ss_pred --CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 368 --EP-------NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 368 --~~-------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
.+ ....+..+...+...+.+ ..+...++......|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSF-GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCS-CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHH-HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 011122222333344455 5555566666666666667777777777777777777777776654
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=1.4e-12 Score=117.47 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=53.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN----AV 372 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~ 372 (462)
++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|...++++.. .++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4444455555555555555555554432111111 34555566666666666666666655421 011 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
++..+...+...|++ +.|...++++.++.+
T Consensus 305 ~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNH-DQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCH-HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHHHHHH
Confidence 555666677777777 777777777776544
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=1.7e-12 Score=119.60 Aligned_cols=193 Identities=13% Similarity=0.068 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccC-----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----H
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMRE-----KN-----LQSWTIMISGLADNGRGNYAISLFAKMIQTGL-KPD----S 303 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~ 303 (462)
++..+..+|...|++++|...+++..+ ++ ..+++.+...|...|++++|...+++..+... .++ .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 444444444455555444444444331 01 12444455555555555555555555443200 011 1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhc---CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC---HH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVY---NI-KPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN---AV 372 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~---~~ 372 (462)
.++..+...|...|++++|...+++..... +. +....++..+...|.+.|++++|.+.+++... .++ ..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 244455555555555555555555554310 11 11244455555556666666666555555421 011 11
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 373 ILRSFLGACRNHGQ---VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 373 ~~~~l~~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.+..+...+...|+ . +.|..++++. ...|.....+..++.+|...|++++|..++++..
T Consensus 305 ~~~~l~~~~~~~~~~~~~-~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAI-QGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHTSSCCHHHH-HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHH-HHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23344445555555 4 4444444443 1222233455566666666666666666666554
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=2.7e-11 Score=107.85 Aligned_cols=220 Identities=11% Similarity=0.009 Sum_probs=164.4
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHh-------cccch-------HhHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 012504 184 SDALKVFHRMKLANESPNSVTLVSLVSACT-------SLINV-------RAGESIHSYAVVNGLELDVALGTALVEMYSK 249 (462)
Q Consensus 184 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (462)
++|..+|++..... +.+...|..++..+. ..|++ ++|..++++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888877642 345566666666654 34665 8888888888873224456688888888888
Q ss_pred cCChHHHHHHHhhccC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hccCcHHHHHH
Q 012504 250 CGHVEKAFKVFNLMRE--K-NLQ-SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC-SHLGLVDEGKN 324 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~ 324 (462)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.+. ++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988775 2 233 788888888889999999999999887632 3344444333332 23689999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 325 YFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EP--NAVILRSFLGACRNHGQVLYLDDNLGKLL 398 (462)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 398 (462)
+|+...+.. +.+...|..++..+.+.|++++|..+|+++.. +| ....|..++..+...|+. +.|..+++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~-~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL-ASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH-HHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 999988742 34577888888889999999999999988743 33 466888888888889999 9999999999
Q ss_pred HhcCCCCCch
Q 012504 399 LKLEPELGAN 408 (462)
Q Consensus 399 ~~~~p~~~~~ 408 (462)
.+..|++...
T Consensus 268 ~~~~p~~~~~ 277 (308)
T 2ond_A 268 FTAFREEYEG 277 (308)
T ss_dssp HHHTTTTTSS
T ss_pred HHHccccccc
Confidence 9999886643
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=6.7e-12 Score=115.64 Aligned_cols=229 Identities=8% Similarity=-0.018 Sum_probs=163.3
Q ss_pred HHHHHHcCCChhHHHHHHHHhHHC----CCCC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCC------CchHhHHH
Q 012504 173 MIAGFVACDSPSDALKVFHRMKLA----NESP-NSVTLVSLVSACTSLINVRAGESIHSYAVVNGL------ELDVALGT 241 (462)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 241 (462)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444566677777777777776542 1111 224566667777777777777777777665310 11245677
Q ss_pred HHHHHHHhcCChHHHHHHHhhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMRE-----KN----LQSWTIMISGLADNGRGNYAISLFAKMIQT----GL-KPDSISFS 307 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~ 307 (462)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888888888888888877653 11 146788888999999999999999888762 22 22355788
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcC---CCCchhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYN---IKPTMEHYGCMVDMLGRAGL---IEEAYHIIRNMPTEPN-AVILRSFLGA 380 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 380 (462)
.+...+...|++++|...+++...... -+.....+..+...|...|+ +++|+.++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888899999999999999988765421 11123345678888888998 8999999999865433 4567778889
Q ss_pred HHHcCChHHHHHHHHHHHHhcC
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
|...|++ +.|...++++.+..
T Consensus 349 y~~~g~~-~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNF-QKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHHHH
Confidence 9999999 99999999988753
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=8e-10 Score=107.62 Aligned_cols=394 Identities=8% Similarity=-0.024 Sum_probs=233.7
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCC---HHHHHHHhccCCC----CCCcccHHHHHHHHHh
Q 012504 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSIS---LHFTRSLFNNLPV----TPPLFAYNTLIRAYAK 78 (462)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~---~~~A~~~~~~~~~----~~~~~~y~~li~~~~~ 78 (462)
+..+...+.++.++.+++.++.. ++.+...|...+ +....++ .+.+..+|++.-. .|++..|..-+....+
T Consensus 73 i~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~ 151 (679)
T 4e6h_A 73 LKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRK 151 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34444456777788888887766 355566666666 4444456 7888888866422 2666677766665555
Q ss_pred CCCc--------hhHHHHHHHHHH-CCC-CCCc-chHHHHHHHhh---------hhcCchhHHHHHHHHHHhCCCCccch
Q 012504 79 TSCS--------IESIKLFDEMLK-TGL-RPDN-FTYPFVVKACG---------RCLLIGIGGSVHSLIFKVGLDSDKYI 138 (462)
Q Consensus 79 ~g~~--------~~a~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~ 138 (462)
.++. +...++|+..+. -|. .|+. ..|...+.... ..++++.+..+|+.++......-..+
T Consensus 152 ~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~ 231 (679)
T 4e6h_A 152 KNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESM 231 (679)
T ss_dssp HSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHH
T ss_pred hcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHH
Confidence 4443 223466666554 255 4433 45555554332 23446667777777664211111122
Q ss_pred HhHHHHHHHh-------------cCChhHHHHHHhc-------CCC--------------C--C------hhhHHHHHHH
Q 012504 139 GNTLLRMYAA-------------CKEIDVAKAVFEE-------MPV--------------R--D------VVSWSSMIAG 176 (462)
Q Consensus 139 ~~~l~~~~~~-------------~~~~~~A~~~~~~-------~~~--------------~--~------~~~~~~l~~~ 176 (462)
|......--. ..+++.|...+.+ +.. | + ...|...+.-
T Consensus 232 w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~f 311 (679)
T 4e6h_A 232 WQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRW 311 (679)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHH
Confidence 2211111000 1122233333322 110 0 0 1234444433
Q ss_pred HHcCC-------ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHH-HHHHHHHHhCCCchHhHHHHHHHHHH
Q 012504 177 FVACD-------SPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGE-SIHSYAVVNGLELDVALGTALVEMYS 248 (462)
Q Consensus 177 ~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (462)
--..+ ..+.+..+|++.... ++-+...|...+..+...|+.+.|. .+++...... +.+...+...+....
T Consensus 312 Ek~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee 389 (679)
T 4e6h_A 312 ESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYE 389 (679)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 22222 123345667776654 3445666666666667778888886 8888887653 556667777888888
Q ss_pred hcCChHHHHHHHhhccC-------------CC------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 012504 249 KCGHVEKAFKVFNLMRE-------------KN------------LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS 303 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 303 (462)
+.|+++.|.++|+++.+ |+ ...|...+....+.|+.+.|..+|.++++.-..+..
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~ 469 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP 469 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh
Confidence 88888888888887763 21 235777777777788888899998888875111122
Q ss_pred HHHHHHHHHhhc-cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHH
Q 012504 304 ISFSAILSACSH-LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE-P----NAVILRSF 377 (462)
Q Consensus 304 ~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~~l 377 (462)
..|...+..-.+ .++.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++.... | ....|...
T Consensus 470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333322222222 345888888888888753 344556677777777888888999998886542 3 24577777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+..-...|+. +.+..+.+++.+..|+++
T Consensus 548 ~~fE~~~G~~-~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 548 IFFESKVGSL-NSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHTCCS-HHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCc
Confidence 7777888888 888888888888888875
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=4.2e-11 Score=106.62 Aligned_cols=214 Identities=8% Similarity=0.002 Sum_probs=173.4
Q ss_pred HhHHHHHHHHHHhCCCchHhHHHHHHHHHHh-------cCCh-------HHHHHHHhhccC---C-ChhhHHHHHHHHHH
Q 012504 219 RAGESIHSYAVVNGLELDVALGTALVEMYSK-------CGHV-------EKAFKVFNLMRE---K-NLQSWTIMISGLAD 280 (462)
Q Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 280 (462)
++|..+|++.+... +.++..|..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888864 6677888888877763 5886 899999998775 2 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH-hcCCHHH
Q 012504 281 NGRGNYAISLFAKMIQTGLKPD-SI-SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG-RAGLIEE 357 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 357 (462)
.|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++..+. .+++...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 444 33 7888888899999999999999999863 2344555654443322 3699999
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 358 AYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL---EPE-LGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 358 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
|.++|++... +.+...|..++..+...|+. +.|..+|+++.+. .|+ ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998743 34678899999999999999 9999999999995 443 456888899999999999999999999
Q ss_pred HhcCCCc
Q 012504 432 INQKGLN 438 (462)
Q Consensus 432 ~~~~~~~ 438 (462)
+.+..+.
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9877654
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=5.7e-12 Score=103.02 Aligned_cols=167 Identities=12% Similarity=0.036 Sum_probs=128.5
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA 312 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 312 (462)
+..+|..+...|...|++++|++.|++..+ .++.+|..+...|...|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456777778888888888888888877653 355677778888888888888888888887753 2245566667777
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
+...++++.+...+.+.... .+.+...+..+..+|.+.|++++|++.|++... +.+...|..+..+|...|++ ++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR-DE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH-HH
Confidence 78888888888888888763 234567788888888888899999888887632 34677888888889999999 99
Q ss_pred HHHHHHHHHhcCCCCC
Q 012504 391 DDNLGKLLLKLEPELG 406 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~ 406 (462)
|...++++.+.+|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999998888653
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.2e-12 Score=116.80 Aligned_cols=247 Identities=11% Similarity=0.054 Sum_probs=165.1
Q ss_pred ccchHhHHHHHHHhcCChhHHHHHHhcCCC--------C---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHC------C
Q 012504 135 DKYIGNTLLRMYAACKEIDVAKAVFEEMPV--------R---DVVSWSSMIAGFVACDSPSDALKVFHRMKLA------N 197 (462)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 197 (462)
+..++..+...+...|++++|...|+++.. . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346788899999999999999999988764 2 2456888899999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHh------CC-CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---
Q 012504 198 ESP-NSVTLVSLVSACTSLINVRAGESIHSYAVVN------GL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK--- 266 (462)
Q Consensus 198 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 266 (462)
-.| ....+..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 222 4567888889999999999999999998875 22 234567888999999999999999999887532
Q ss_pred -----C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc
Q 012504 267 -----N---LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT 338 (462)
Q Consensus 267 -----~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 338 (462)
+ ..++..+...|...|++++|...++++.+.. |+. .+...... ...++ ..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~--------~~~~~~~~--~~~~~----------~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER--------EFGSVDDE--NKPIW----------MH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH--------HHC--------CCHH----------HH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh--------cCCCCCcc--hHHHH----------HH
Confidence 2 2467888889999999999999999887641 000 00000000 00000 00
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPTE--PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
...+..+...+...+.+.++...++..... ....++..+...|...|++ ++|...++++.++.|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKF-EAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHhhc
Confidence 112222333344455555566666555432 2355677778888888888 8888888888876654
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=2.8e-10 Score=104.28 Aligned_cols=192 Identities=13% Similarity=0.023 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC----------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE----------K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLK--P--DSIS 305 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~ 305 (462)
..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3444445555555555555544331 0 0123334444555555555555555555432111 0 1123
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHH-----HHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHH
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYG-----CMVDMLGRAGLIEEAYHIIRNMPTE-PN-----AVIL 374 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~ 374 (462)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.... |. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 44444445555555555555555543211111100111 1222344555555555555554321 10 1233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------GANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
..+...+...|++ +.|...++++....+.. ..++..++.++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~-~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEF-EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444555555555 55555555554432111 1234444555555555555555555443
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=3.2e-12 Score=104.36 Aligned_cols=158 Identities=16% Similarity=0.037 Sum_probs=86.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcC
Confidence 333444444444444444333221 112334444444444444555555555444432 12234444555555555555
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHH
Q 012504 355 IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 355 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
+++|.+.++++.. +.+...+..+...+...|++ +.|...++++.+..|+++.++..++.++...|++++|...++..
T Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRF-DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554421 23455666666677777777 77777777777777777777777777777777777777777776
Q ss_pred hcCC
Q 012504 433 NQKG 436 (462)
Q Consensus 433 ~~~~ 436 (462)
.+..
T Consensus 171 ~~~~ 174 (186)
T 3as5_A 171 NELD 174 (186)
T ss_dssp HHHH
T ss_pred HHcC
Confidence 6543
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=9.4e-12 Score=122.53 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=122.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCM 345 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 345 (462)
..+|+.+...|.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|+..|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 346677777777777777777777777765 33 3557777777777778888888877777753 343 6677778
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHH
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 423 (462)
..+|.+.|++++|++.|++... +.+...|..+..+|...|++ ++|+..++++.+++|+++.++..++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~-~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI-PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 8888888888888888877632 34567788888888888888 88888888888888888888888888888888888
Q ss_pred HHHHHHHHHhc
Q 012504 424 TAAELMVAINQ 434 (462)
Q Consensus 424 ~A~~~~~~~~~ 434 (462)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=1.6e-11 Score=112.83 Aligned_cols=193 Identities=13% Similarity=0.038 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccC-----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CH
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMRE-----KN-----LQSWTIMISGLADNGRGNYAISLFAKMIQT----GLKP-DS 303 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 303 (462)
++..+..+|...|+++.|...+++..+ ++ ..+++.+...|...|++++|.+.+++..+. +..+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 444445555555555555544444331 11 124445555555556666555555555432 1111 12
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC------CCC-HHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVY---NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT------EPN-AVI 373 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~-~~~ 373 (462)
.++..+..+|...|++++|...+++..... +.+....++..+...|.+.|++++|...+++... .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 244555555666666666666666555410 1111244555566666666666666666655411 111 223
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 374 LRSFLGACRNHGQ---VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 374 ~~~l~~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
+..+...+...++ . ..|...+++. ...|.....+..++..|...|++++|...+++..
T Consensus 303 ~~~l~~ly~~~~~~~~~-~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 303 FLFLQAVYKETVDERKI-HDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHSSSCCHHHH-HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHH-HHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444445555 4 4444444431 1122223355566777777777777777766654
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=1.1e-09 Score=106.60 Aligned_cols=416 Identities=7% Similarity=-0.020 Sum_probs=277.9
Q ss_pred HHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCC---chhHHHHHHHHH
Q 012504 20 HQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSC---SIESIKLFDEML 93 (462)
Q Consensus 20 ~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~---~~~a~~~~~~m~ 93 (462)
...++.-+... +.|...|..++ .+...+.++.++.+|+++-.. .+...|..-+..-.+.|+ ++.+.++|++.+
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 44455555554 46889999999 666667999999999876422 355567788888888888 999999999998
Q ss_pred HCC-CCCCcchHHHHHHHhhhhcCc--------hhHHHHHHHHHHh-CC-CCc-cchHhHHHHHHHh---------cCCh
Q 012504 94 KTG-LRPDNFTYPFVVKACGRCLLI--------GIGGSVHSLIFKV-GL-DSD-KYIGNTLLRMYAA---------CKEI 152 (462)
Q Consensus 94 ~~g-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~~~~ 152 (462)
... ..|+...|...+.-..+.++. +...++|+.++.. |. .++ ...|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 863 147888888877766665554 3344777776653 55 554 3577777765432 3457
Q ss_pred hHHHHHHhcCCC-C--Ch-hhHH---HHHHHHHcC----------CChhHHHHHHHHhHH--CCC----C----------
Q 012504 153 DVAKAVFEEMPV-R--DV-VSWS---SMIAGFVAC----------DSPSDALKVFHRMKL--ANE----S---------- 199 (462)
Q Consensus 153 ~~A~~~~~~~~~-~--~~-~~~~---~l~~~~~~~----------~~~~~a~~~~~~m~~--~~~----~---------- 199 (462)
+.+..+|++... | +. .+|. .+....... .+++.|...+.++.. .++ +
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 788999988874 2 11 2332 333322100 011223334433221 011 1
Q ss_pred -C-----CH---HHHHHHHHHHhccc-------chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHH-HHHhh
Q 012504 200 -P-----NS---VTLVSLVSACTSLI-------NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAF-KVFNL 262 (462)
Q Consensus 200 -p-----~~---~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~ 262 (462)
| +. ..|...+.---..+ ..+.+..+|++.+... +.....|...+..+...|+.++|. ++|++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 00 12333332221111 1234566788887764 667888888888888999999996 99988
Q ss_pred ccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHhhccCc
Q 012504 263 MRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGL---------KPD------------SISFSAILSACSHLGL 318 (462)
Q Consensus 263 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~ll~~~~~~~~ 318 (462)
... .+...|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|+
T Consensus 370 Ai~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 370 GQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 764 3445677788888899999999999999986410 132 2357777777778899
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc-CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 319 VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA-GLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
.+.|..+|....+. ...+....|...+..-.+. ++.+.|.++|+.... +.+...|...+......|+. +.|..+|
T Consensus 450 l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~-~~AR~lf 527 (679)
T 4e6h_A 450 LAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE-SQVKSLF 527 (679)
T ss_dssp HHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH-HHHHHHH
Confidence 99999999999864 1222344454444333344 458999999998743 33566777888888889999 9999999
Q ss_pred HHHHhcCCC---CCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 396 KLLLKLEPE---LGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 396 ~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
+++....|+ ....|...+..-...|+.+.+.++.+++.+..+..
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999998774 34577888888888999999999999998776543
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1.8e-11 Score=103.86 Aligned_cols=192 Identities=11% Similarity=-0.040 Sum_probs=137.6
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMRE----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSISFSAI 309 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 309 (462)
.++..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..+++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3556777788888888888888888887663 55666666888888888888888888888875 33 34577778
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC---HHHHHHHH
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTM-------EHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN---AVILRSFL 378 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~---~~~~~~l~ 378 (462)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|+++.. .|+ ...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 888888888888888888887642 2233 4577777788888888888888887654 344 45566666
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+|. ..+...++++..+.+.++..+... .....+.+++|+..+++..+..+.
T Consensus 161 ~~~~------~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 161 VLFY------NNGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHH------HHHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHH------HHHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 6664 334455667777766664444333 344567789999999999876654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=2.1e-10 Score=105.33 Aligned_cols=227 Identities=10% Similarity=0.009 Sum_probs=162.1
Q ss_pred HHHHHHcCCChhHHHHHHHHhHHCCC-CCC----HHHHHHHHHHHhcccchHhHHHHHHHHHHhCC-----C-chHhHHH
Q 012504 173 MIAGFVACDSPSDALKVFHRMKLANE-SPN----SVTLVSLVSACTSLINVRAGESIHSYAVVNGL-----E-LDVALGT 241 (462)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 241 (462)
....+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+.+..+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888877654310 122 34566777778888888888888877765311 1 1245677
Q ss_pred HHHHHHHhcCChHHHHHHHhhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMRE-----KN----LQSWTIMISGLADNGRGNYAISLFAKMIQ-----TGLKPDSISFS 307 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 307 (462)
.+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 788888888888888888877653 12 24677788888899999999999988876 32 22356778
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGL---IEEAYHIIRNMPTEPN-AVILRSFLGA 380 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 380 (462)
.+...+.+.|++++|...+++......-..+ ...+..+...|...++ +.+|+..+++....|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888899999999999999988765322112 3455666677777888 8889999988654333 3456678888
Q ss_pred HHHcCChHHHHHHHHHHHHhc
Q 012504 381 CRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~ 401 (462)
|...|++ +.|...++++.+.
T Consensus 346 y~~~g~~-~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHF-EQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCH-HHHHHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHHH
Confidence 9999999 9999999988753
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=4.2e-11 Score=113.25 Aligned_cols=207 Identities=14% Similarity=-0.023 Sum_probs=123.7
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccch-HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHh
Q 012504 183 PSDALKVFHRMKLANESPNSVTLVSLVSACTSLINV-RAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFN 261 (462)
Q Consensus 183 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 261 (462)
+++++..++...... +.+...+..+..++...|++ ++|...+++..+.. +.+...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444554443321 23455555666666666666 66666666666654 3345566666666666666666666666
Q ss_pred hccC--CChhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc--------CcHHHH
Q 012504 262 LMRE--KNLQSWTIMISGLADN---------GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL--------GLVDEG 322 (462)
Q Consensus 262 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------~~~~~a 322 (462)
+..+ |+...+..+...+... |++++|...+++..+.. +-+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 6553 3445566666666666 66777777777766642 22455666666666666 667777
Q ss_pred HHHHHHHHHhcCCC---CchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 323 KNYFDEMARVYNIK---PTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 323 ~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
...|++..+. . + .+...|..+..+|...|++++|.+.|++... +.+...+..+...+...|+. ++|...+
T Consensus 241 ~~~~~~al~~-~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~-~eAi~~~ 315 (474)
T 4abn_A 241 LSAYAQAEKV-D-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL-TSLLESK 315 (474)
T ss_dssp HHHHHHHHHH-C-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HHHHHHHHHh-C-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 7777776653 1 1 2466666777777777777777777766522 23455566666666666666 5555443
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=8.3e-11 Score=95.82 Aligned_cols=168 Identities=9% Similarity=-0.018 Sum_probs=143.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
...+..+...+...|++++|...++++.+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677888899999999999999998753 56788889999999999999999999998863 33567888888899
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a 391 (462)
...|++++|...++++... .+.+...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++ +.|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH-EEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCH-HHH
Confidence 9999999999999999874 345678888999999999999999999988732 34678888999999999999 999
Q ss_pred HHHHHHHHhcCCCCCch
Q 012504 392 DNLGKLLLKLEPELGAN 408 (462)
Q Consensus 392 ~~~~~~~~~~~p~~~~~ 408 (462)
...++++.+..|++...
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 164 LPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCCCchhh
Confidence 99999999988887643
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=1.1e-09 Score=100.39 Aligned_cols=225 Identities=8% Similarity=-0.127 Sum_probs=119.0
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcc----hHHHHHHHhhhhcCchhHHHHHHHHHHhCCCC-cc----chHhH
Q 012504 71 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNF----TYPFVVKACGRCLLIGIGGSVHSLIFKVGLDS-DK----YIGNT 141 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 141 (462)
.....+...|++++|...++.........+.. .+..+...+...|+++.|...+++........ +. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455667889999999998887754222221 34445556677788888888888776542111 11 22345
Q ss_pred HHHHHHhcCChhHHHHHHhcCCC----------C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCC--C--CHHHHH
Q 012504 142 LLRMYAACKEIDVAKAVFEEMPV----------R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANES--P--NSVTLV 206 (462)
Q Consensus 142 l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~ 206 (462)
+...+...|++++|...+++... + ...++..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 55666667777776666655431 1 1123444555666666666666666665442111 1 123444
Q ss_pred HHHHHHhcccchHhHHHHHHHHHHhCCCch--HhHHH----HHHHHHHhcCChHHHHHHHhhccCCCh-------hhHHH
Q 012504 207 SLVSACTSLINVRAGESIHSYAVVNGLELD--VALGT----ALVEMYSKCGHVEKAFKVFNLMREKNL-------QSWTI 273 (462)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~ 273 (462)
.+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++...... ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 555555666666666666665554311111 01111 122334555666666666655543211 12334
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 012504 274 MISGLADNGRGNYAISLFAKMI 295 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~ 295 (462)
+...+...|++++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=4.7e-10 Score=95.00 Aligned_cols=203 Identities=9% Similarity=0.004 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHH
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGL 278 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 278 (462)
+..+......+...|++++|...+++..+...+++...+..+..++...|++++|+..|++..+. +..+|..+...|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 34444555555555555555555555555542244444444566666666666666666655432 234566666666
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHH
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDS-------ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDM 348 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~ 348 (462)
...|++++|...+++..+... .+. ..|..+...+...|++++|...|++..+ ..|+ ...+..+..+
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHH
Confidence 666677777776666665421 123 3455566666777788888888877764 3443 4566667777
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
|...|+. .++++.. ..+...+.... ....+.+ +.|...++++.++.|+++.+...+..+.
T Consensus 163 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~-~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 163 FYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAF-KKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 6655432 2222211 22344443333 3345567 9999999999999999987777766554
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=2.3e-10 Score=100.94 Aligned_cols=188 Identities=9% Similarity=-0.049 Sum_probs=106.7
Q ss_pred HHHhcCChHHHHHHHhhccCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 012504 246 MYSKCGHVEKAFKVFNLMREK-----N----LQSWTIMISGLADNGRGNYAISLFAKMIQTGL---KPD--SISFSAILS 311 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ll~ 311 (462)
.|...|++++|...|.+..+- + ..+|+.+...|...|++++|+..+++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666665555544321 1 23556666666666666666666666554210 011 235666666
Q ss_pred Hhhcc-CcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCH-----HHHHHH
Q 012504 312 ACSHL-GLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPNA-----VILRSF 377 (462)
Q Consensus 312 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-----~~~~~l 377 (462)
.|... |++++|...|++......-..+ ..++..+...|.+.|++++|+..|+++.. .+.. ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 67764 7777777777776653110111 34566777777777888888777776521 1111 145666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHh--hcCCHHHHHHHHHHHhc
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGAN-----YVLAASVSS--LSGNWDTAAELMVAINQ 434 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 434 (462)
..++...|++ +.|...++++.++.|..... +..++.++. ..+++++|+..|+.+..
T Consensus 206 g~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDA-VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCH-HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCH-HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 6677777888 88888888887777765432 334455553 35667777777765544
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=4.1e-11 Score=104.96 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=22.1
Q ss_pred CCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 403 PELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 403 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
|..+.++..++.+|...|++++|..++++..+
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445667777777777777777777776654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=1.9e-09 Score=94.95 Aligned_cols=189 Identities=13% Similarity=0.023 Sum_probs=101.1
Q ss_pred HHHHcCCChhHHHHHHHHhHHC----CCCCC-HHHHHHHHHHHhcccchHhHHHHHHHHHHhCC---Cc--hHhHHHHHH
Q 012504 175 AGFVACDSPSDALKVFHRMKLA----NESPN-SVTLVSLVSACTSLINVRAGESIHSYAVVNGL---EL--DVALGTALV 244 (462)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 244 (462)
..|...|++++|...|.+.... |-+++ ..+|..+..++...|++++|...+++..+... .+ ...++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666655332 21111 34566666667777777777776666654310 11 133555666
Q ss_pred HHHHhc-CChHHHHHHHhhccCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHH
Q 012504 245 EMYSKC-GHVEKAFKVFNLMREK-----N----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS------ISFSA 308 (462)
Q Consensus 245 ~~~~~~-~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ 308 (462)
.+|... |++++|+..|++..+- + ..++..+...+...|++++|+..|++..+....... ..+..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 666664 7777776666665421 1 234556666666667777777766666654322111 13444
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCch------hHHHHHHHHHH--hcCCHHHHHHHHHhCC
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTM------EHYGCMVDMLG--RAGLIEEAYHIIRNMP 366 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~~~~A~~~~~~~~ 366 (462)
+..++...|++++|...|++... +.|+. ..+..++.++. ..+++++|+..|+.+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 55556666666666666666652 23321 12233444443 3455666666666554
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=2.7e-09 Score=92.39 Aligned_cols=241 Identities=12% Similarity=0.017 Sum_probs=167.6
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCChh-hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhH
Q 012504 143 LRMYAACKEIDVAKAVFEEMPVRDVV-SWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
++-..-.|.+..++.-...+...+.. .-.-+.++|...|++.... .-.|....+..+...+ ..+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----H
Confidence 34455679999998877776543333 3334557888888877521 1234444444444443 222 6
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 222 ESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK-----NLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
...+++....+ +++...+..+..++...|++++|++++.+.... +...+..+++.+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777665 445555568889999999999999999987543 346778888999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHHh--hccC--cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012504 297 TGLKP-----DSISFSAILSAC--SHLG--LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT 367 (462)
Q Consensus 297 ~~~~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 367 (462)
. .| +..+...+..++ ...| +..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+..
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 55 355666666663 3334 899999999998753 45433333444488899999999999876532
Q ss_pred ------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 368 ------------EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 368 ------------~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+.++.+...++......|+ .+.++++++.+..|+++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk---~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL---DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC---TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh---HHHHHHHHHHHhCCCCh
Confidence 3356677566666666675 57899999999999987
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=3e-10 Score=111.94 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=121.8
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
.+...++.|..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..|++..+... -+...|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3456777777777777888888777777653 2456777788888888888888888888777531 24567778888
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVL 388 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 388 (462)
++...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++... +.+...+..+..++...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~- 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW- 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH-
Confidence 888888888888888887753 34 467788888888888888888888887632 33567788888888888888
Q ss_pred HHHHHHHHHHHhcC
Q 012504 389 YLDDNLGKLLLKLE 402 (462)
Q Consensus 389 ~~a~~~~~~~~~~~ 402 (462)
++|.+.++++.++.
T Consensus 162 ~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 162 TDYDERMKKLVSIV 175 (723)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877653
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=6.3e-09 Score=90.12 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=34.8
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCC-CchHhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012504 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 186 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
|+..|++....+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444332 23333333444444445555555555544433331 1234444444555555555555555555444
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=1.9e-09 Score=94.25 Aligned_cols=199 Identities=12% Similarity=0.073 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHh------CC-CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC--------
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVN------GL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK-------- 266 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------- 266 (462)
..++..+...+...|++++|...++++.+. +- +....++..+..+|...|++++|.+.+++..+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345556666666666666666666666544 21 223456666677777777777777776665421
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhc---
Q 012504 267 ---NLQSWTIMISGLADNGRGNYAISLFAKMIQT------GLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVY--- 333 (462)
Q Consensus 267 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 333 (462)
...++..+...|...|++++|...++++.+. +-.|+ ..++..+...+...|++++|...+++.....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1345666777777778888887777777654 11222 3467777778888888888888888776531
Q ss_pred ---CCCCc-hhHHHHHHHHHHhc------CCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 334 ---NIKPT-MEHYGCMVDMLGRA------GLIEEAYHIIRNMPTE-P-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 334 ---~~~~~-~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
...+. ...+..+...+... ..+..+...++..... | ...++..+...|...|++ ++|..+++++.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKL-EAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Confidence 11122 23333333333322 2344555555555432 2 345677788889999999 9999999988764
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.17 E-value=2.5e-09 Score=90.31 Aligned_cols=186 Identities=12% Similarity=-0.010 Sum_probs=125.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-HHHHH
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE--KN----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLK-PDS-ISFSA 308 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~~ 308 (462)
...+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|...|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555667778888999999988888764 32 246777788888889999999999888875322 111 13434
Q ss_pred HHHHhhc------------------cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012504 309 ILSACSH------------------LGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPTEP 369 (462)
Q Consensus 309 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 369 (462)
+..++.. .|++++|...|+++.+. .|+ ...+........ .....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH----------
Confidence 4444433 45677777777777643 232 222221111100 00000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCC
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVP 441 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 441 (462)
......+...+...|++ +.|...++++.+..|+++ .++..++.+|.+.|++++|++.++.+...++....
T Consensus 147 -~~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAW-VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -HHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01123456778999999 999999999999999886 56889999999999999999999999887766544
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=7.2e-10 Score=84.87 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=81.8
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRN 383 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 383 (462)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++.. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555666666666555542 122344555555666666666666666655421 2345566667777777
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 384 HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 384 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.|++ +.|...++++.+..|.++.++..++.++...|++++|...++++.+.+
T Consensus 82 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDY-DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777 777778877777777777777777888888888888888887776544
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=2.4e-09 Score=92.73 Aligned_cols=99 Identities=10% Similarity=0.003 Sum_probs=76.2
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---N---LQSWTIMISGLADNGRGNYAISLFAKMIQTGL-KPD-SIS 305 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~ 305 (462)
+.+...+..+...+.+.|++++|+..|+++.+. + ...+..+..+|...|++++|...|++..+... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345666777888888999999999999988752 3 45677888889999999999999999888632 222 345
Q ss_pred HHHHHHHhhc--------cCcHHHHHHHHHHHHHh
Q 012504 306 FSAILSACSH--------LGLVDEGKNYFDEMARV 332 (462)
Q Consensus 306 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~ 332 (462)
+..+..++.. .|++++|...|+++...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 6666777777 88999999999998875
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=1.8e-09 Score=93.47 Aligned_cols=202 Identities=12% Similarity=-0.017 Sum_probs=144.2
Q ss_pred CCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCch---HhHHHHHHHHHHhcCChHHHHHHHhhccC--C-C---hhh
Q 012504 200 PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELD---VALGTALVEMYSKCGHVEKAFKVFNLMRE--K-N---LQS 270 (462)
Q Consensus 200 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~ 270 (462)
.+...+..+...+...|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677788888999999999999999998875 333 67888899999999999999999999874 2 1 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhH
Q 012504 271 WTIMISGLAD--------NGRGNYAISLFAKMIQTGLKPDS-ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEH 341 (462)
Q Consensus 271 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 341 (462)
+..+..++.. .|++++|...|+++.+.. |+. .....+ ..+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 999999999999998863 332 222111 111111110 0123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhcCCCCC
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT-EP----NAVILRSFLGACRNH----------GQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~----------~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+..+...|.+.|++++|+..|+++.. .| ....+..+..+|... |++ ++|...++++.+..|+++
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY-RRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH-HHHHHHHHHHHHHCCCCh
Confidence 55677888899999999998888632 23 245677777777766 888 999999999999999986
Q ss_pred ch---HHHHHHHHhhcCCHHH
Q 012504 407 AN---YVLAASVSSLSGNWDT 424 (462)
Q Consensus 407 ~~---~~~l~~~~~~~g~~~~ 424 (462)
.. ...+..++.+.|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 43 3344444444444443
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.09 E-value=6.3e-10 Score=110.01 Aligned_cols=168 Identities=14% Similarity=0.012 Sum_probs=86.6
Q ss_pred hcccchHhHHHHHHHHH--------HhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHc
Q 012504 213 TSLINVRAGESIHSYAV--------VNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADN 281 (462)
Q Consensus 213 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 281 (462)
...|++++|...+++.. +.. +.+...+..+..++...|++++|++.|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45555666666665555 221 33444555555556666666666666655543 2344555555556666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 012504 282 GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHI 361 (462)
Q Consensus 282 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 361 (462)
|++++|...|++..+... -+...+..+..++...|++++ ...|++..+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666555421 133455555555555566665 5556555542 122344555555566666666666666
Q ss_pred HHhCCC-CCC-HHHHHHHHHHHHHcC
Q 012504 362 IRNMPT-EPN-AVILRSFLGACRNHG 385 (462)
Q Consensus 362 ~~~~~~-~~~-~~~~~~l~~~~~~~~ 385 (462)
|+++.. .|+ ...+..+..++...+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 655532 233 344444444444433
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=7.4e-09 Score=79.05 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDML 349 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (462)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45566677777777788877777777653 234556666777777778888888888877653 233456677777778
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 350 GRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
...|++++|.+.++++.. +.+...+..+...+...|++ +.|...++++.+..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH-HHHHHHHHHHHccCCC
Confidence 888888888888777632 33566777777888888888 8888888888877765
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=2.6e-10 Score=89.48 Aligned_cols=140 Identities=11% Similarity=-0.044 Sum_probs=87.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCH
Q 012504 277 GLADNGRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLI 355 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (462)
.+...|++++|+..+...... .|+ ...+..+...|...|++++|...|++..+. -+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 334445666666666655432 222 224445566666667777777777766653 123466667777777777777
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 012504 356 EEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYL-DDNLGKLLLKLEPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 356 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 421 (462)
++|+..|++... +.+...+..+...|...|+. ++ +..+++++.++.|+++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT-DGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS-SSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777766532 23466777777777777777 54 4445677888888888777777777766664
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=4.3e-08 Score=81.71 Aligned_cols=172 Identities=9% Similarity=-0.016 Sum_probs=128.5
Q ss_pred HHHHHhhccC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----cHHHHHHHHHHHH
Q 012504 256 AFKVFNLMRE-KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG----LVDEGKNYFDEMA 330 (462)
Q Consensus 256 a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 330 (462)
|.+.|++..+ .++.++..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444332 456667777777777788888888888887764 55666667777776 6 7888888888886
Q ss_pred HhcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 012504 331 RVYNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPTEPN----AVILRSFLGACRN----HGQVLYLDDNLGKLL 398 (462)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~~a~~~~~~~ 398 (462)
.. -+...+..|...|.. .+++++|.++|++.....+ +..+..|...|.. .++. +.|..+++++
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~A 155 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD-VKASEYFKGS 155 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH-HHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHH
Confidence 53 355677777777776 7888999998888765433 7788888888887 7788 9999999999
Q ss_pred HhcCCCCCchHHHHHHHHhhc-C-----CHHHHHHHHHHHhcCCC
Q 012504 399 LKLEPELGANYVLAASVSSLS-G-----NWDTAAELMVAINQKGL 437 (462)
Q Consensus 399 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 437 (462)
.+. |.++..+..|+.+|... | ++++|+..|+...+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 887 66677888888888754 3 89999999998887764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=6e-09 Score=91.47 Aligned_cols=172 Identities=9% Similarity=-0.027 Sum_probs=127.0
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCC
Q 012504 257 FKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIK 336 (462)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (462)
...+......+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 334444443445566667777888888888888888887753 224567777788888888888888888887653 4
Q ss_pred CchhHHH-HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--CchHHH
Q 012504 337 PTMEHYG-CMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL--GANYVL 411 (462)
Q Consensus 337 ~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~ 411 (462)
|+..... .....+...++.++|...+++... +.+...+..+...+...|++ ++|...++++.+..|++ ...+..
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~-~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN-EEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-HHHHHHHHHHHhcccccccchHHHH
Confidence 4433222 223345667777778887777632 34677888888999999999 99999999999999988 778999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHh
Q 012504 412 AASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
++.++...|+.++|...+++..
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999998887654
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=4.6e-09 Score=101.97 Aligned_cols=160 Identities=7% Similarity=-0.021 Sum_probs=123.9
Q ss_pred cCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 250 CGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 346788999999999999999999999998863 235678888999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhc
Q 012504 327 DEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNH---GQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~ 401 (462)
++..+. .+.+...+..+..+|.+.|++++|.+.+++... +.+...+..+...+... |+. ++|...++++.+.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~-~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL-DVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTH-HHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHhc
Confidence 999874 234578899999999999999999999998743 34678888899999999 999 9999999999999
Q ss_pred CCCCCchHHHHH
Q 012504 402 EPELGANYVLAA 413 (462)
Q Consensus 402 ~p~~~~~~~~l~ 413 (462)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=3.9e-07 Score=86.07 Aligned_cols=339 Identities=9% Similarity=-0.090 Sum_probs=198.5
Q ss_pred CCHHHHHHHhccCCCC-CCcccHHHHHHHHHhCCC-chhHHHHHHHHHHC-CCCC-CcchHHHHHHHhh----hhcCchh
Q 012504 48 ISLHFTRSLFNNLPVT-PPLFAYNTLIRAYAKTSC-SIESIKLFDEMLKT-GLRP-DNFTYPFVVKACG----RCLLIGI 119 (462)
Q Consensus 48 ~~~~~A~~~~~~~~~~-~~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~~~----~~~~~~~ 119 (462)
++.+.+..+|++.-.. |++..|..-+....+.++ .+....+|+..+.. |..| +...|...+..+. ..++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 4677777777665433 777777777766666553 34566677766653 3322 4455555555433 2456677
Q ss_pred HHHHHHHHHHhCCCCccchHhHHHHHHHh-------------cCChhHHHHHHhcCC----CCChhhHHHHHHHHHcCC-
Q 012504 120 GGSVHSLIFKVGLDSDKYIGNTLLRMYAA-------------CKEIDVAKAVFEEMP----VRDVVSWSSMIAGFVACD- 181 (462)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~- 181 (462)
+..+|+.++......-...|......-.. .+.+..|..+++.+. ..+...|...+.--...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 77777777763211111122211111000 011222232222221 113345555554332221
Q ss_pred -C-----hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHH
Q 012504 182 -S-----PSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEK 255 (462)
Q Consensus 182 -~-----~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (462)
- .+.+..+|+++... .+.+...|...+..+...|+.+.|..++++.... +.+...+.... ...+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~----~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYG----LVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH----HHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHH----hhcchhH
Confidence 1 24567788888775 3455677777777778889999999999999988 44444433222 2111111
Q ss_pred H-HHHHhhcc------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCcHHH
Q 012504 256 A-FKVFNLMR------------EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH-LGLVDE 321 (462)
Q Consensus 256 a-~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 321 (462)
. ..+.+... ......|...+....+.++.+.|..+|+++ .. ..++...|......-.. .++.+.
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHH
Confidence 1 12222111 001245677777777788899999999998 32 22344444432222222 336999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 322 GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
|..+|+...+.++ .++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|+. +.+..++++...
T Consensus 339 ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~-~~~r~v~~~~~~ 412 (493)
T 2uy1_A 339 PYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSM-ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 9999999988632 234556677887888999999999999985 3678888888877888999 999998888774
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=8.3e-10 Score=86.56 Aligned_cols=126 Identities=10% Similarity=-0.133 Sum_probs=105.0
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHG 385 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 385 (462)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++... +.+...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44567788999999999998864 3443 55677889999999999999999998743 457889999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHH-HHHHhcCCCc
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAEL-MVAINQKGLN 438 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~ 438 (462)
++ +.|...++++.+++|+++.++..++.+|.+.|++++|.+. +++..+..+.
T Consensus 80 ~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 80 NT-DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp CH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred ch-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 99 9999999999999999999999999999999999887765 5877776543
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=2.1e-08 Score=99.14 Aligned_cols=183 Identities=13% Similarity=-0.004 Sum_probs=150.4
Q ss_pred HcCCChhHHHHHHHHhH--------HCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 012504 178 VACDSPSDALKVFHRMK--------LANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSK 249 (462)
Q Consensus 178 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (462)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|...++++.+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 43 23456778888899999999999999999999876 5677889999999999
Q ss_pred cCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 250 CGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
.|++++|++.|++..+ .+...|..+..++...|++++ +..|++..+.+. -+...+..+..++...|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999874 356789999999999999999 999999988632 25678888999999999999999999
Q ss_pred HHHHHhcCCCCc-hhHHHHHHHHHHhcC--------CHHHHHHHHHhCCC
Q 012504 327 DEMARVYNIKPT-MEHYGCMVDMLGRAG--------LIEEAYHIIRNMPT 367 (462)
Q Consensus 327 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~ 367 (462)
+++.+ +.|+ ...+..+..++...+ ++++|.+.+..+..
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 99874 4565 677778888876644 47778888877753
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=4.2e-09 Score=82.16 Aligned_cols=104 Identities=14% Similarity=-0.022 Sum_probs=89.0
Q ss_pred CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 334 NIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 334 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
.+.|+ ...+..+...+.+.|++++|...|+++.. +.+...|..+..+|...|++ ++|...|+++.++.|+++.++.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF-QQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH-HHHHHHHHHHHhhCCCCcHHHH
Confidence 34444 56777888889999999999999988743 44688889999999999999 9999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 411 LAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.++.+|...|++++|+..|++..+....
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998876643
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=3.2e-08 Score=82.22 Aligned_cols=134 Identities=10% Similarity=0.025 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG 317 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 317 (462)
..+..+|.+.|++++|+..|++..+ .+...+..+...+...|++++|...|++..+.. +-+...+..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3467777777777777777777653 345677777777777788888888887777753 224556666666665444
Q ss_pred c--HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 012504 318 L--VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFL 378 (462)
Q Consensus 318 ~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~ 378 (462)
. ...+...++... ...|....+..+..++...|++++|...|++... .|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3 334455554443 2233333444455566667788888888877543 46655544443
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=8.4e-08 Score=79.69 Aligned_cols=131 Identities=6% Similarity=-0.073 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
...+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. -+.+...+..+..+|.
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 3458888999999999999999999863 225678888999999999999999999999874 2335778888888887
Q ss_pred hcCC--HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 351 RAGL--IEEAYHIIRNMPTE-PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 351 ~~~~--~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
..|+ .+.+...++..... |....+.....++...|++ ++|...|+++.++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~-~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRY-EKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCH
Confidence 6654 45567777776532 2223444556677788999 99999999999999974
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=7.9e-08 Score=85.27 Aligned_cols=221 Identities=11% Similarity=0.009 Sum_probs=152.4
Q ss_pred cCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHH
Q 012504 179 ACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFK 258 (462)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 258 (462)
..|++++|.+++++..+.. +.. .+...++++.|...|.+. +..|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3567888888888776531 111 011146677766666554 456777888888888
Q ss_pred HHhhccCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCcHHHHHH
Q 012504 259 VFNLMREK-----N----LQSWTIMISGLADNGRGNYAISLFAKMIQTG---LKPD--SISFSAILSACSHLGLVDEGKN 324 (462)
Q Consensus 259 ~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~~~~~~a~~ 324 (462)
.|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88766531 1 2467888888999999999999998876531 1121 3467778888888 99999999
Q ss_pred HHHHHHHhcCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHHcCChHHHHH
Q 012504 325 YFDEMARVYNIKP----TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN----AVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 325 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
.|++......-.. ...++..+...|.+.|++++|++.|++... .++ ...+..++.++...|++ +.|.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~-~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY-VAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH-HHHH
Confidence 9998875421111 146788889999999999999999988732 122 23566667778888999 9999
Q ss_pred HHHHHHHhcCCCCCch-----HHHHHHHHhhcCCHHHHHHH
Q 012504 393 NLGKLLLKLEPELGAN-----YVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 428 (462)
..++++. ..|..... ...++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 88876543 33445545 56777666553
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=6.5e-09 Score=83.94 Aligned_cols=75 Identities=12% Similarity=-0.065 Sum_probs=53.4
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--CchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 358 AYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL--GANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 358 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
|...+++... +.+...+..+...+...|++ ++|...++++.+..|+. +..+..++.++...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRD-EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH-HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4444444321 23467777777788888888 88888888888887764 4477788888888888888888877654
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=7.1e-08 Score=84.60 Aligned_cols=164 Identities=10% Similarity=0.018 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--CChhh-HHHHH
Q 012504 199 SPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--KNLQS-WTIMI 275 (462)
Q Consensus 199 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~ 275 (462)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++.. |+... .....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3444566667777778888888888888888775 55667777788888888888888888888765 33322 22223
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCH
Q 012504 276 SGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLI 355 (462)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (462)
..+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33566677777888888877753 23556777777788888888888888888876521112256777777888888887
Q ss_pred HHHHHHHHh
Q 012504 356 EEAYHIIRN 364 (462)
Q Consensus 356 ~~A~~~~~~ 364 (462)
++|...|++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 777776654
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=7e-09 Score=78.43 Aligned_cols=106 Identities=7% Similarity=-0.144 Sum_probs=48.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
.+......+.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|++.+++... +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444444444455555555555544432 122344444444444445555555444444321 223444444444444
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
..|++ ++|...|+++.+++|+++.++..+.
T Consensus 93 ~~~~~-~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREW-SKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HTTCH-HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCH-HHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 45555 4555555555555554444444433
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=2.9e-08 Score=96.33 Aligned_cols=147 Identities=8% Similarity=-0.078 Sum_probs=96.3
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHH
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
.|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..+. +...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467778888888777654 445677777888888888888888888877642 4567777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA---GLIEEAYHIIRNM 365 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~ 365 (462)
++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8887753 224567777778888888888888888887764 233466777788888888 8888888888776
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=1.1e-07 Score=80.19 Aligned_cols=185 Identities=12% Similarity=-0.025 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCc--hHhHHHHHHHHHHhcCChHHHHHHHhhccC--CC-h---hhHH
Q 012504 201 NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLEL--DVALGTALVEMYSKCGHVEKAFKVFNLMRE--KN-L---QSWT 272 (462)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~ 272 (462)
+...+..+...+...|++++|...|+++.+..... ....+..++.+|.+.|++++|+..|+++.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667788889999999999999999874221 245778899999999999999999999874 32 2 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhc
Q 012504 273 IMISGLAD------------------NGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFDEMARVY 333 (462)
Q Consensus 273 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 333 (462)
.+..++.. .|++++|...|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55566554 57899999999999986 34432 2221111 001111111
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 334 NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
.....+...|.+.|++++|+..|+++.. .|+ ...+..+..++.+.|+. +.|...++.+....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~-~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN-AQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc-HHHHHHHHHHHhhCCCchh
Confidence 1223567788899999999999998743 233 25677888999999999 9999999999998888754
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=5.1e-07 Score=78.95 Aligned_cols=220 Identities=12% Similarity=0.052 Sum_probs=107.1
Q ss_pred ChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccc--chHhHHHHHHHHHHhCCCchHhHHHHHHHHH----Hhc---C
Q 012504 182 SPSDALKVFHRMKLANESPN-SVTLVSLVSACTSLI--NVRAGESIHSYAVVNGLELDVALGTALVEMY----SKC---G 251 (462)
Q Consensus 182 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 251 (462)
..++|+++++.+... .|+ ...++.--.++...| +++++...++.+.... +.+..+|+.-..++ ... +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 335677777777664 343 334555555555555 6677777776666654 44444554433333 333 4
Q ss_pred ChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc------HH
Q 012504 252 HVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGN--YAISLFAKMIQTGLKPDSISFSAILSACSHLGL------VD 320 (462)
Q Consensus 252 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~ 320 (462)
++++++++++++.+ ++..+|+.-.-.+.+.|+++ ++++.++++.+..+. |...|+.-.....+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 55666666655553 23445555555555555555 566666666554332 34444433333333333 45
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE-AYHIIRNMPT-----EPNAVILRSFLGACRNHGQVLYLDDNL 394 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~a~~~ 394 (462)
++.+.++.+... -+-|...|+.+...+.+.|+... +.++.+++.. ..++..+..+...+.+.|+. ++|.++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~-~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY-NESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH-HHHHHH
Confidence 555555555432 12334444444444444444222 2333333321 12344444444444444555 555555
Q ss_pred HHHHHh-cCCCCCch
Q 012504 395 GKLLLK-LEPELGAN 408 (462)
Q Consensus 395 ~~~~~~-~~p~~~~~ 408 (462)
++.+.+ .+|.....
T Consensus 281 ~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 281 YDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHTTCGGGHHH
T ss_pred HHHHHhccChHHHHH
Confidence 555443 34444333
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=6.7e-08 Score=77.91 Aligned_cols=156 Identities=11% Similarity=0.017 Sum_probs=102.4
Q ss_pred hHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH-Hh
Q 012504 138 IGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSA-CT 213 (462)
Q Consensus 138 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~ 213 (462)
.+..+...+...|++++|+..|++... .+...+..+...+...|++++|+..|++..... |+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344566677788888888888888773 356678888888888888888888888876543 344332222111 11
Q ss_pred cccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC-----hhhHHHHHHHHHHcCChHHHH
Q 012504 214 SLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN-----LQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~ 288 (462)
..++...+...+++..+.. +.+...+..+..++...|++++|...|+++.+.+ ...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334566777776654 4456677777777777777777777777765422 336677777777777777777
Q ss_pred HHHHHHHH
Q 012504 289 SLFAKMIQ 296 (462)
Q Consensus 289 ~~~~~m~~ 296 (462)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=2.9e-07 Score=81.03 Aligned_cols=161 Identities=4% Similarity=-0.085 Sum_probs=119.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHH
Q 012504 273 IMISGLADNGRGNYAISLFAKMIQTGL-KPDSI----SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYG 343 (462)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 343 (462)
..+..+...|++++|...+++..+... .|+.. .+..+...+...+++++|...+++......-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999988876421 22211 2334666677778999999999998863222222 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------CC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------Cch
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMP-------TE-P-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------GAN 408 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~ 408 (462)
.+...|...|++++|...|+++. .. + ...++..+...|...|++ +.|...++++.+..+.. +.+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-EESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999998888764 11 1 234778888999999999 99999999998764332 457
Q ss_pred HHHHHHHHhhcCC-HHHHHHHHHHHhc
Q 012504 409 YVLAASVSSLSGN-WDTAAELMVAINQ 434 (462)
Q Consensus 409 ~~~l~~~~~~~g~-~~~A~~~~~~~~~ 434 (462)
+..++.+|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999999987653
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.88 E-value=6.4e-08 Score=80.68 Aligned_cols=130 Identities=13% Similarity=-0.046 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
..+..+...+...|++++|...|++. +.|+...+..+...+...|++++|...+++.... .+.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34566778888999999999998876 3567888888889999999999999999998874 24457788889999
Q ss_pred HHhcCCHHHHHHHHHhCCC--CC----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EP----------------NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~----------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
|...|++++|.+.|+++.. +. ....+..+..++...|++ +.|...++++.+..|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW-KKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH-HHHHHHHHHHHHcCccc
Confidence 9999999999999987632 11 236778888889999999 99999999999998876
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=5.5e-08 Score=86.28 Aligned_cols=195 Identities=10% Similarity=-0.070 Sum_probs=100.9
Q ss_pred hcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHh
Q 012504 114 CLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRM 193 (462)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 193 (462)
.|++++|.+++++..+.... . + +...++++.|...|++ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 45566666666666554211 0 0 1113556666655543 244566667777777776665
Q ss_pred HHC----CCCC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCC---Cc--hHhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012504 194 KLA----NESP-NSVTLVSLVSACTSLINVRAGESIHSYAVVNGL---EL--DVALGTALVEMYSKCGHVEKAFKVFNLM 263 (462)
Q Consensus 194 ~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 263 (462)
... +-.+ -..+|..+..++...|++++|...+++..+... .+ ...++..+..+|.. |++++|+..|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 432 1100 123556666666677777777777766554310 11 13455556666655 6666666666654
Q ss_pred cCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 264 REK-----N----LQSWTIMISGLADNGRGNYAISLFAKMIQT----GLKPD-SISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 264 ~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
.+- + ..++..+...|...|++++|+..|++.... +..+. ...+..+..++...|++++|...|++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 421 1 234555566666666666666666665542 11111 113333444444556666666666555
Q ss_pred H
Q 012504 330 A 330 (462)
Q Consensus 330 ~ 330 (462)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 4
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=3.5e-06 Score=73.71 Aligned_cols=214 Identities=9% Similarity=0.060 Sum_probs=158.2
Q ss_pred chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC--ChHHHHHHHhhccCC---ChhhHHHHHHHH----HHc---CCh
Q 012504 217 NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCG--HVEKAFKVFNLMREK---NLQSWTIMISGL----ADN---GRG 284 (462)
Q Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~---~~~~~~~l~~~~----~~~---~~~ 284 (462)
..++|......++..+ +.+..+|+.-..++...| +++++++.++.+... +..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3457788888888876 556677887778888888 899999999888753 345565554444 445 788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH--HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC------HH
Q 012504 285 NYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD--EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL------IE 356 (462)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 356 (462)
++++.+++++.+...+ +...++.-...+.+.|.++ ++...++++.+. -+-|...|+.....+...++ ++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 8999999999886433 6667766666666667777 888888888874 24456677766666666666 88
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 357 EAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE---PELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 357 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
++++.++.+.. +-|...|+.+...+...|+..+....+.+++.+++ |.++.++..++.+|.+.|+.++|+++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888877632 45778888888888888886355667777777665 77777888899999999999999999998
Q ss_pred Hhc
Q 012504 432 INQ 434 (462)
Q Consensus 432 ~~~ 434 (462)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=1.9e-08 Score=75.94 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=89.6
Q ss_pred CCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 335 IKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 335 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
+.|+ ...+......|.+.|++++|++.|++... +.+...|..+..++...|++ +.|+..++++++++|+++.+|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF-QRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH-HHHHHHHHHHHHhhhhhhHHHHH
Confidence 4455 56777888999999999999999988742 45688888999999999999 99999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 412 AASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
++.+|...|++++|++.|++..+..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999998876554
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.85 E-value=7.8e-09 Score=80.69 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
...+..+...+.+.|++++|...|+++.. +.+...|..+..++...|++ ++|...++++.++.|+++..+..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY-DLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44555566666666777777766666521 33556666666666777777 7777777777777777776777777777
Q ss_pred hhcCCHHHHHHHHHHHhcCC
Q 012504 417 SLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~ 436 (462)
...|++++|+..|+...+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 77777777777776665543
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=8.9e-08 Score=79.78 Aligned_cols=171 Identities=10% Similarity=-0.013 Sum_probs=103.6
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhc----CchhHHHHHHHHH
Q 012504 53 TRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCL----LIGIGGSVHSLIF 128 (462)
Q Consensus 53 A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 128 (462)
|.+.|++.-...+..++..+...|...+++++|++.|++..+.| ++..+..+-..+.. + ++++|..+++...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 33444433333566667777777777777777777777777654 44555555555655 5 6777777777776
Q ss_pred HhCCCCccchHhHHHHHHHh----cCChhHHHHHHhcCCCCC-----hhhHHHHHHHHHc----CCChhHHHHHHHHhHH
Q 012504 129 KVGLDSDKYIGNTLLRMYAA----CKEIDVAKAVFEEMPVRD-----VVSWSSMIAGFVA----CDSPSDALKVFHRMKL 195 (462)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~ 195 (462)
+.| +...+..|...|.. .+++++|...|++..+.+ ..++..|...|.. .+++++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 554 34455556666655 566777777776666432 4566666666666 5667777777776665
Q ss_pred CCCCCCHHHHHHHHHHHhcc-c-----chHhHHHHHHHHHHhC
Q 012504 196 ANESPNSVTLVSLVSACTSL-I-----NVRAGESIHSYAVVNG 232 (462)
Q Consensus 196 ~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 232 (462)
. .++...+..+...|... | +.++|...++...+.|
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4 22333445555555432 2 6666666666666665
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.83 E-value=1.3e-07 Score=83.33 Aligned_cols=162 Identities=4% Similarity=-0.094 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC--CCc--hhH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDS-----ISFSAILSACSHLGLVDEGKNYFDEMARVYNI--KPT--MEH 341 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~ 341 (462)
+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++......- .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344456666777777777777766654222111 12233444556677788888877777642111 111 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------CC
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT----EPN-----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE------LG 406 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 406 (462)
++.+...|...|++++|...++++.. .|+ ..++..+...|...|++ ++|...++++.+..+. ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-EESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH-HHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77777788888888888877776531 121 25677777888888888 8888888887765322 13
Q ss_pred chHHHHHHHHhhcCCHHHH-HHHHHHHh
Q 012504 407 ANYVLAASVSSLSGNWDTA-AELMVAIN 433 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 433 (462)
.++..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4677788888888888888 66666554
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.81 E-value=6.1e-08 Score=77.09 Aligned_cols=126 Identities=6% Similarity=-0.096 Sum_probs=97.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
.+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++... +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677778888888888877753 233566777788888888888888888877632 345778888888999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH--HhhcCCHHHHHHHHHHHh
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVLAASV--SSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 433 (462)
..|++ +.|...++++.+..|.+...+..+..+ +.+.|++++|++.++...
T Consensus 93 ~~~~~-~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKF-RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999 999999999999999988777554444 778899999999988764
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=2.1e-06 Score=81.07 Aligned_cols=348 Identities=11% Similarity=-0.045 Sum_probs=201.2
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcC-chhHHHHHHHHHHh-CCCC-ccchHhHHHHH
Q 012504 69 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLL-IGIGGSVHSLIFKV-GLDS-DKYIGNTLLRM 145 (462)
Q Consensus 69 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~ 145 (462)
|...+..+-. |+++.+..+|+..+.. .|+...|...+.-..+.++ .+....+|+.++.. |..+ +..+|...+..
T Consensus 18 yer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 18 MEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 3333444433 8999999999999884 5788899888887766663 46678888888765 4333 55677777766
Q ss_pred HH----hcCChhHHHHHHhcCCC-C--Ch-hhHHHHHHHHHcC--------------CChhHHHHHHHHhHHCCCCCCHH
Q 012504 146 YA----ACKEIDVAKAVFEEMPV-R--DV-VSWSSMIAGFVAC--------------DSPSDALKVFHRMKLANESPNSV 203 (462)
Q Consensus 146 ~~----~~~~~~~A~~~~~~~~~-~--~~-~~~~~l~~~~~~~--------------~~~~~a~~~~~~m~~~~~~p~~~ 203 (462)
+. ..++++.+.++|++... | +. ..|..... +.+. +.+..|..+++.+...--..+..
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 54 24678889999988754 2 11 12222221 1111 12223344444433210001222
Q ss_pred HHHHHHHHHhcc--c-----chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHH
Q 012504 204 TLVSLVSACTSL--I-----NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMIS 276 (462)
Q Consensus 204 ~~~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 276 (462)
.|...+.--... + ..+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.... +.... +-.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~-l~~ 250 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF-LSL 250 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH-HHH
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH-HHH
Confidence 343333332111 1 0344667788877754 556777888888888888888888888876543 22111 111
Q ss_pred HHHHcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHH
Q 012504 277 GLADNGRGNYAISLFAKMIQTG---------LKP---DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGC 344 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 344 (462)
.|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.. +. ...+...|..
T Consensus 251 ~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~ 324 (493)
T 2uy1_A 251 YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIY 324 (493)
T ss_dssp HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHH
T ss_pred HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHH
Confidence 23322222222 23332210 001 1134555555555677888899999888 32 1234445543
Q ss_pred HHHHHHh-cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 012504 345 MVDMLGR-AGLIEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 345 l~~~~~~-~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 421 (462)
....-.. .++.+.|..+|+.... -| ++..|...+......|+. +.|..+|+++. .....|...+..-...|+
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~-~~aR~l~er~~----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE-ENARALFKRLE----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHSC----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 3332222 3368889888887632 12 345566667777788888 88888888872 334567777777777899
Q ss_pred HHHHHHHHHHHhc
Q 012504 422 WDTAAELMVAINQ 434 (462)
Q Consensus 422 ~~~A~~~~~~~~~ 434 (462)
.+.+..+++++.+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887663
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=5.2e-07 Score=75.04 Aligned_cols=131 Identities=9% Similarity=-0.086 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGL 318 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 318 (462)
.+..+...+...|++++|...|++...++...|..+...|...|++++|...|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345677788899999999999999988888999999999999999999999999998864 3356788888999999999
Q ss_pred HHHHHHHHHHHHHhcCC-------------CC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 012504 319 VDEGKNYFDEMARVYNI-------------KP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN 370 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~-------------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~ 370 (462)
+++|...|++..+...- .| ....+..+..+|.+.|++++|.+.|+++.. .|+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999874211 11 137888999999999999999999998743 344
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=2.8e-08 Score=86.87 Aligned_cols=187 Identities=5% Similarity=-0.094 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
..+..+...+...|++++|+..|++..+ .+...|..+...|...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444455555555666666665555442 244555556666666666666666666655542 123445555666666
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKP---TMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 391 (462)
..|++++|...|++..+...-.+ ....+..+ ...+...+.. ......+.+......+.. + ..|+. +.|
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~-~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAER-ERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHH-HHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHH-HHH
Confidence 66666666666666554310000 01111111 1111111111 111222223333332322 2 25777 788
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhc-CCHHHHHHHHHHHhc
Q 012504 392 DNLGKLLLKLEPELGANYVLAASVSSLS-GNWDTAAELMVAINQ 434 (462)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 434 (462)
.+.++++.+..|++......+...+.+. +.+++|.++|+.+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888888887766666666666655 677888888887765
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=1.5e-07 Score=70.56 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGA 380 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 380 (462)
...+..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|...++++.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345566666667777777777777777653 233456667777777777777777777776532 3456677777788
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG 420 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 420 (462)
+...|++ +.|...++++.+..|+++..+..++.++...|
T Consensus 87 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDY-DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888 88888888888888888777777777765543
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.73 E-value=9.9e-08 Score=72.58 Aligned_cols=115 Identities=8% Similarity=-0.096 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGAC 381 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 381 (462)
..+..+...+...|++++|...+++.... .+.+...+..+..+|...|++++|.+.++++.. +.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34555555555666666666666665532 122455556666666666666666666655422 23456667777777
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 421 (462)
...|++ +.|...++++.+..|.+...+..++.++...|+
T Consensus 95 ~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDY-TKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCH-HHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 778888 888888888888777777777777777766553
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=3.6e-06 Score=73.92 Aligned_cols=159 Identities=13% Similarity=0.010 Sum_probs=118.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCC---h------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREKN---L------QSWTIMISGLADNGRGNYAISLFAKMIQTGLK-PD----SISFS 307 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~ 307 (462)
..+..+...|++++|...+++..+.. . ..+..+...+...+++++|+..+++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888899999999998876421 1 13334666677778999999999999874222 22 23688
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhc----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC-HHHH
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVY----NIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-------EPN-AVIL 374 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~-~~~~ 374 (462)
.+...|...|++++|...++++.+.. +..+. ..++..+...|.+.|++++|.+.+++... .+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999999987421 11122 45788899999999999999999887632 122 6788
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHhc
Q 012504 375 RSFLGACRNHG-QVLYLDDNLGKLLLKL 401 (462)
Q Consensus 375 ~~l~~~~~~~~-~~~~~a~~~~~~~~~~ 401 (462)
..+..++...| .. +.|...++++..+
T Consensus 240 ~~lg~~~~~~g~~~-~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEE-AEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcH-HHHHHHHHHHHHH
Confidence 88899999999 57 8999999998764
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=1.1e-07 Score=71.93 Aligned_cols=117 Identities=6% Similarity=-0.084 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGA 380 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 380 (462)
...+..+...+...|+++.|...+++.... .+.+...+..+...+...|++++|.+.+++... +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666777777777777777653 233466677777777777777777777776532 3346677778888
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCH
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNW 422 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 422 (462)
+...|++ +.|...++++.+..|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKH-VEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888 8888888888888888888888888888777764
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.71 E-value=1.1e-07 Score=73.48 Aligned_cols=97 Identities=12% Similarity=-0.040 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
...+..+...+.+.|++++|...|+++.. +.+...|..+..++...|++ +.|...++++.+..|+++..+..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY-EQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34444555566666666666666665521 23455666666666666666 6666666666666666666666666666
Q ss_pred hhcCCHHHHHHHHHHHhcCC
Q 012504 417 SLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~ 436 (462)
...|++++|++.|+...+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666665443
No 132
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=9.1e-08 Score=70.21 Aligned_cols=100 Identities=10% Similarity=-0.082 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE--LGANYVLAAS 414 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 414 (462)
...+..+...+...|++++|...++++.. +.+...+..+...+...|++ +.|...++++.+..|. +..++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY-EEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 45666777778888888888888877632 34567788888888999999 9999999999999998 8888999999
Q ss_pred HHhhc-CCHHHHHHHHHHHhcCCCcc
Q 012504 415 VSSLS-GNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 415 ~~~~~-g~~~~A~~~~~~~~~~~~~~ 439 (462)
++... |++++|++.++...+....+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999888776544
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.68 E-value=9e-08 Score=77.19 Aligned_cols=128 Identities=8% Similarity=0.020 Sum_probs=93.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHhcCCH-
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM-LGRAGLI- 355 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~- 355 (462)
+...|++++|...+++..... +.+...+..+...+...|++++|...|++..... +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 445678888888888887763 3356778888888888888888888888887642 3356677777777 7788887
Q ss_pred -HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchH
Q 012504 356 -EEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANY 409 (462)
Q Consensus 356 -~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 409 (462)
++|...++++.. +.+...+..+...+...|++ +.|...++++.+..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANY-AQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccH-HHHHHHHHHHHhhCCCCccHH
Confidence 888888887632 33567777788888888888 888888888888888876433
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=2.7e-07 Score=78.88 Aligned_cols=121 Identities=10% Similarity=-0.071 Sum_probs=55.5
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCh
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNA----VILRSFLGACRNHGQV 387 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 387 (462)
.+...|++++|.+.|+.+... .|+......+...+.+.+++++|+..|+.....|+. ..+..+..++...|++
T Consensus 111 ~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 111 CEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 344455555555555544321 232223333344455555555555555544322211 2344444555555555
Q ss_pred HHHHHHHHHHHHhcC--CC-CCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 388 LYLDDNLGKLLLKLE--PE-LGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++...+
T Consensus 188 -~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 188 -TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp -HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55555555554321 22 22244445555555555555555555554433
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=1.6e-06 Score=76.29 Aligned_cols=163 Identities=12% Similarity=-0.010 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCC---Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--H
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMREK---NL------QSWTIMISGLADNGRGNYAISLFAKMIQTGL---KPD--S 303 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~ 303 (462)
..+...+..+...|++++|.+.+.+..+. .. ..+..+...+...|++++|...+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455667778888888888888755421 11 2234455667778899999999888875321 112 3
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-C
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-------EP-N 370 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~-~ 370 (462)
.+++.+...|...|++++|...+++........|+ ..++..+...|.+.|++++|.+.+++... .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47778888888899999999999888732111222 25788888899999999999988887621 11 2
Q ss_pred HHHHHHHHHHHHHcCChHHHH-HHHHHHHHhc
Q 012504 371 AVILRSFLGACRNHGQVLYLD-DNLGKLLLKL 401 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a-~~~~~~~~~~ 401 (462)
..++..+...|...|+. +.| ...++++..+
T Consensus 236 ~~~~~~lg~~y~~~g~~-~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYE-EAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHH
Confidence 56778888889999999 888 7778887753
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.8e-07 Score=70.64 Aligned_cols=96 Identities=13% Similarity=-0.036 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 012504 340 EHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSS 417 (462)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 417 (462)
..+..+...+.+.|++++|+..|++... +.+...|..+..++...|++ +.|...++++.+..|+++..+..++.++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-PEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455556666666666666666666522 23456666666677777777 77777777777777777767777777777
Q ss_pred hcCCHHHHHHHHHHHhcCC
Q 012504 418 LSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~ 436 (462)
..|++++|+..+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 7777777777776665543
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=2.3e-07 Score=83.27 Aligned_cols=143 Identities=12% Similarity=-0.070 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
...+..+...+.+.|++++|+..|++..... |+...+ ..+.+... .. .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~-~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA-QA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH-HH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH-HH--------HHHHHHHHHHH
Confidence 3456666677777777777777777766542 211000 00111110 00 01457788888
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHH
Q 012504 348 MLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTA 425 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 425 (462)
+|.+.|++++|+..++++.. +.+...+..+..+|...|++ +.|...|+++.++.|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF-ELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888732 34678888999999999999 9999999999999999999999999999999999998
Q ss_pred -HHHHHHHh
Q 012504 426 -AELMVAIN 433 (462)
Q Consensus 426 -~~~~~~~~ 433 (462)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 44566553
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=1.3e-07 Score=70.84 Aligned_cols=97 Identities=12% Similarity=-0.157 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
.+..+...+.+.|++++|...|+++.. +.+...|..+..++...|++ +.|+..++++.++.|+++..+..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455667788899999999999988743 34688888899999999999 999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCc
Q 012504 419 SGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 419 ~g~~~~A~~~~~~~~~~~~~ 438 (462)
.|++++|+..+++..+.++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 99999999999998876543
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=4.3e-07 Score=77.62 Aligned_cols=136 Identities=11% Similarity=-0.057 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHH
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGCMVDML 349 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 349 (462)
-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... ..|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 344566677777777777777665532 33323334444567778888888888755431 1121 23566777788
Q ss_pred HhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 350 GRAGLIEEAYHIIRNMPTE---P--NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
.+.|++++|+..|++.... | ..........++.+.|+. ++|...|+++...+|+ ..+...|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~-deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE-SAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888876322 3 233555667778888888 8888888888888887 55555443
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=5.4e-07 Score=70.11 Aligned_cols=100 Identities=5% Similarity=-0.080 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGAC 381 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 381 (462)
..+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|++.|+++.. +.++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 36667777888899999999999998864 234577888899999999999999999988732 34567888889999
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
...|++ ++|...|+++.++.|+++
T Consensus 115 ~~lg~~-~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAP-LKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCH-HHHHHHHHHHHHHCCCHH
T ss_pred HHcCCH-HHHHHHHHHHHHhCCCHH
Confidence 999999 999999999999988764
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=1.9e-07 Score=74.22 Aligned_cols=110 Identities=7% Similarity=-0.094 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 012504 302 DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLG 379 (462)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~ 379 (462)
+...+..+...+...|++++|...|++.... .+.+...|..+..+|.+.|++++|+..|++... +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4557788888899999999999999999874 234678899999999999999999999988743 346888999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 380 ACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
++...|++ +.|...++++.++.|++...+...+.
T Consensus 88 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADY-KGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCH-HHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999 99999999999999999886655443
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=2.8e-06 Score=69.83 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQT----GLKP--DSISFSAILSACSHLGLVDEGKNYFDEMA 330 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 330 (462)
+..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444444444455555554444444322 1011 11233444444445555555555554443
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=5.5e-07 Score=68.88 Aligned_cols=95 Identities=12% Similarity=-0.120 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
...+..+...+...|++++|...|++... +.+...|..+..++...|++ +.|...++++.+..|+++.++..++.++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-EQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 44444455555555555555555544321 22344555555555555555 5555555555555555555555555555
Q ss_pred hhcCCHHHHHHHHHHHhc
Q 012504 417 SLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~ 434 (462)
...|++++|+..+++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555443
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.58 E-value=2.2e-07 Score=70.26 Aligned_cols=96 Identities=7% Similarity=-0.118 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc-------hHH
Q 012504 340 EHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA-------NYV 410 (462)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~ 410 (462)
..+..+...+.+.|++++|++.|++... +.+...|..+..+|...|++ +.|+..+++++++.|++.. +|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF-AECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH-HHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3456667777777777777777776532 33566777777777777777 7777777777777665543 455
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 411 LAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.++.++...|++++|++.|++..+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66777777788888888777766543
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=7e-07 Score=66.00 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
+..+...+...|++++|...+++... +.+...+..+...+...|++ +.|...++++.+..|+++..+..++.++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-QKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 33344444444444444444444311 12344444444444445555 5555555555554444444444455555555
Q ss_pred CCHHHHHHHHHHHhcC
Q 012504 420 GNWDTAAELMVAINQK 435 (462)
Q Consensus 420 g~~~~A~~~~~~~~~~ 435 (462)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 5555555555444433
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=7e-07 Score=73.53 Aligned_cols=62 Identities=10% Similarity=-0.067 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHC----CCCC-CHHHHHHHHHHHhcccchHhHHHHHHHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLA----NESP-NSVTLVSLVSACTSLINVRAGESIHSYAV 229 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 229 (462)
.++..+...+...|++++|...+++.... +..| ....+..+...+...|++++|...+++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555555544331 1111 12233344444444445544444444433
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=6e-07 Score=68.12 Aligned_cols=102 Identities=10% Similarity=-0.028 Sum_probs=90.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 336 KPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
+.+...+..+...+.+.|++++|.+.|++... +.+...+..+...+...|++ +.|...++++.+..|+++.++..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF-QLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34477888899999999999999999998643 34688899999999999999 9999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 414 SVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.++...|++++|++.+++..+....
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998876543
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.55 E-value=5.2e-07 Score=74.18 Aligned_cols=167 Identities=7% Similarity=-0.106 Sum_probs=101.3
Q ss_pred HHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 012504 247 YSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGK 323 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 323 (462)
....|+++++.+.++.-.+. ....+..+...+...|++++|...|++..... |+...+... ....-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~- 82 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDK- 82 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHH-
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHH-
Confidence 34445555555555433321 23456666677777777777777777776642 111100000 00000
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 324 NYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
... .....+..+..+|.+.|++++|+..+++... +.+...+..+..++...|++ +.|...++++.+.
T Consensus 83 --~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 --KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL-EEAKENLYKAASL 151 (198)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH-HHHHHHHHHHHHH
Confidence 000 0135677788888889999999988887632 34678888899999999999 9999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCHHHHH-HHHHHHhcC
Q 012504 402 EPELGANYVLAASVSSLSGNWDTAA-ELMVAINQK 435 (462)
Q Consensus 402 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 435 (462)
.|+++.++..++.++...|+.+++. ..+..+-..
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999888888877 555555443
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.54 E-value=8.6e-05 Score=65.69 Aligned_cols=179 Identities=8% Similarity=0.005 Sum_probs=116.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc-chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 012504 171 SSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI-NVRAGESIHSYAVVNGLELDVALGTALVEMYSK 249 (462)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (462)
+.+-....+.+..++|+++++++...+ +-+...++.--.++...| +++++...++.+.... +.+..+|+.-..++..
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333334445556678999999888753 234445666556666667 5888888888888776 5677777777666666
Q ss_pred c-C-ChHHHHHHHhhccCCC---hhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 012504 250 C-G-HVEKAFKVFNLMREKN---LQSWTIMISGLADNGRGN--------YAISLFAKMIQTGLKPDSISFSAILSACSHL 316 (462)
Q Consensus 250 ~-~-~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 316 (462)
. + ++++++++++++.+.+ ..+|+.-.-.+.+.|+++ ++++.++++.+..+. |...|+.-...+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 6 6 7888888888888644 456655555555555555 788888888876433 556666666555555
Q ss_pred Cc-------HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 317 GL-------VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 317 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
+. ++++.+.+++.... -+-|...|+.+-..+.+.|+
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 54 56777777777653 23446666665555555544
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=5.5e-07 Score=67.36 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++ +.|...++++.+..|+++.++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 56788889999999999999999998742 34678888999999999999 9999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHhcCCC
Q 012504 417 SLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~~ 437 (462)
...|++++|...++++.+..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhcCHHHHHHHHHHHHHhCC
Confidence 999999999999999887654
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=2.6e-06 Score=67.42 Aligned_cols=24 Identities=13% Similarity=-0.082 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRN 364 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~ 364 (462)
.+..+..++...|++++|.+.+++
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 333333333444444444433333
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=1.4e-06 Score=64.35 Aligned_cols=109 Identities=10% Similarity=-0.061 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGAC 381 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 381 (462)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++... +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455555666666677777766666653 223455666666677777777777777766522 23466677777777
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
...|++ +.|...++++.+..|+++..+..++.+
T Consensus 83 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRF-EEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCH-HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888 888888888888888777666665544
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=2.4e-07 Score=72.13 Aligned_cols=103 Identities=8% Similarity=-0.055 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGA 380 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 380 (462)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|+..|+++.. +.++..+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345666667778888888888888888763 234577778888888888888888888887632 3456777888888
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
+...|++ ++|...++++.+..|+++..
T Consensus 99 ~~~~g~~-~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGEL-AEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCH-HHHHHHHHHHHHHCcCCCcc
Confidence 9999999 99999999999988887754
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=1e-06 Score=70.86 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=69.2
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH-HHHcCCh-HH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGA-CRNHGQV-LY 389 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~-~~ 389 (462)
...|++++|...++..... .+.+...+..+...|...|++++|...|+++.. +.+...+..+..+ +...|++ .+
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666666666665543 123455666666666666666666666665532 2345555555555 4455552 15
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.|...++++.+..|+++.++..++.+|...|++++|...++++.+..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 6666666666666666666666666666666666666666666555443
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=5.5e-07 Score=78.58 Aligned_cols=93 Identities=9% Similarity=-0.066 Sum_probs=41.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYS 248 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (462)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444455555555555555544421 1133444444444444444444444444444332 223334444444444
Q ss_pred hcCChHHHHHHHhhc
Q 012504 249 KCGHVEKAFKVFNLM 263 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~ 263 (462)
..|++++|...|++.
T Consensus 84 ~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 84 EMESYDEAIANLQRA 98 (281)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 444444444444443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.49 E-value=8.1e-07 Score=68.58 Aligned_cols=104 Identities=12% Similarity=-0.041 Sum_probs=75.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++... +.++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445556677778888888888877753 233566777777788888888888888877632 335566777888888
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
..|++ +.|...++++.+..|+++.....
T Consensus 98 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 98 QLGDL-DGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HTTCH-HHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HcCCH-HHHHHHHHHHHHhCCCCcchHHH
Confidence 88888 88888888888888877755443
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=1.9e-06 Score=68.29 Aligned_cols=95 Identities=11% Similarity=-0.037 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
...|..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...+++.... -+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456666777777777777777777777653 224556667777777777777777777777653 1233666777777
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 012504 348 MLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~ 365 (462)
+|...|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 777777777777777665
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=9.5e-07 Score=66.52 Aligned_cols=109 Identities=8% Similarity=-0.173 Sum_probs=70.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
.+......+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++... +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666667777777777766653 233456666677777777777777777766532 334666777777777
Q ss_pred HcCChHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 012504 383 NHGQVLYLDDNLGKLLLKLE------PELGANYVLAASVS 416 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 416 (462)
..|++ +.|...++++.+.. |.+..+...+..+.
T Consensus 84 ~~~~~-~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEY-ASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCH-HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCH-HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 77888 78888888877777 66655555555443
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2.7e-06 Score=65.83 Aligned_cols=110 Identities=9% Similarity=-0.117 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRS 376 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 376 (462)
...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++... +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34455555556666666666666666653 2333 45555666666666666666666655421 234556666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
+..++...|++ +.|...++++.+..|++..++..+..+.
T Consensus 105 ~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRL-DQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCH-HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 66667777777 7777777777777776665555555443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.4e-06 Score=67.55 Aligned_cols=101 Identities=10% Similarity=-0.054 Sum_probs=89.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 337 PTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 337 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
.+...+..+...+...|++++|.+.|++... .|+ ...+..+...+...|++ +.|...++++.+..|+++..+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY-DKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHhhCccCHHHHHH
Confidence 3567888899999999999999999998743 465 67888889999999999 99999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 412 AASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
++.++...|++++|...+++..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999998876543
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.47 E-value=1e-06 Score=66.44 Aligned_cols=99 Identities=13% Similarity=-0.017 Sum_probs=88.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 338 TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
+...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++ +.|...++++.+..|+++..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY-AGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch-HHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 466788888999999999999999998742 34678888999999999999 999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHhcCCC
Q 012504 416 SSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+...|++++|...+++..+..+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHhCCHHHHHHHHHHHHhcCc
Confidence 9999999999999999887654
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=0.00021 Score=63.17 Aligned_cols=176 Identities=7% Similarity=-0.068 Sum_probs=116.8
Q ss_pred HHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhc-CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhc-C
Q 012504 73 IRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCL-LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAAC-K 150 (462)
Q Consensus 73 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 150 (462)
-....+.+..++|+++++.++..+.. +...|+.--..+...| ++++++.+++.++...++ +..+|+.-..++... +
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 33344455667899999999986433 3445666666666677 589999999999887643 566777777666665 6
Q ss_pred -ChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChh--------HHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc-
Q 012504 151 -EIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPS--------DALKVFHRMKLANESPNSVTLVSLVSACTSLIN- 217 (462)
Q Consensus 151 -~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~- 217 (462)
++++++++++.+... |..+|+.-.-...+.|.++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 788888888888754 4556655444444444555 7888888877754 3466677766666666654
Q ss_pred ------hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 218 ------VRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 218 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
++++.+.+.++.... +-|...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 466666666666654 5566666665555555544
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=1.8e-06 Score=65.98 Aligned_cols=100 Identities=7% Similarity=-0.206 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 012504 302 DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLG 379 (462)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~ 379 (462)
+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++... +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556667777777777777777777777653 233466777777777788888888877777632 335677777888
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 380 ACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
++...|++ +.|...++++.+..|+
T Consensus 86 ~~~~~~~~-~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESY-DEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhH-HHHHHHHHHHHHHChh
Confidence 88888888 8888888888887776
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=5.7e-06 Score=77.10 Aligned_cols=162 Identities=5% Similarity=-0.127 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHHHHhc---CCCCc-hhH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQT-GLKPDS----ISFSAILSACSHLGLVDEGKNYFDEMARVY---NIKPT-MEH 341 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~ 341 (462)
+..++..|...|++++|.+.+.++... +..++. ...+.+...+...|+.+.+..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556677777777777777777766542 111121 122333344556678888888777765321 12222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCC----C
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT-------EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE---PEL----G 406 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~ 406 (462)
+..+...|...|++++|..+++++.. ++ ...++..++..|...|++ +.|..+++++.... +.+ .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNL-AKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77788888888888888888876521 12 245677778888889999 88988888887643 222 1
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
..+..++..+...|++++|...+.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345667777888899998888776654
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=1.5e-06 Score=65.61 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=57.4
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-C---HHHHHHHHHH
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTM---EHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-N---AVILRSFLGA 380 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~---~~~~~~l~~~ 380 (462)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+++.. .| + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4445566677777777777666531 1122 3555666666666677776666666522 12 2 4455556666
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
+...|++ +.|...++++.+..|+++..
T Consensus 86 ~~~~g~~-~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 86 QYGEGKN-TEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHSTTSHHH
T ss_pred HHHcCCH-HHHHHHHHHHHHHCCCChHH
Confidence 6666666 66666666666666665533
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=1.4e-06 Score=82.16 Aligned_cols=119 Identities=7% Similarity=-0.103 Sum_probs=96.8
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCC
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQ 386 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 386 (462)
+...+...|++++|...+++..+. -+.+...|..+..+|.+.|++++|++.+++... +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334566788999999999988864 233478888899999999999999999988632 3467888899999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCchHHHHHHH--HhhcCCHHHHHHHHH
Q 012504 387 VLYLDDNLGKLLLKLEPELGANYVLAASV--SSLSGNWDTAAELMV 430 (462)
Q Consensus 387 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 430 (462)
+ ++|...++++.+..|++...+..++.+ +.+.|++++|++.++
T Consensus 90 ~-~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 F-RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp H-HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred H-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9 999999999999999999999988888 888999999999988
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.35 E-value=5e-06 Score=77.96 Aligned_cols=142 Identities=8% Similarity=-0.066 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
..|..+...+.+.|++++|+..|++..+.. |+...+ . .+... ... +.....|..+..+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~~~-----~~~~~~~~nla~~ 326 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----ASE-----SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----HHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----HHH-----HHHHHHHHHHHHH
Confidence 456666667777777777777777766531 111000 0 00000 000 0114578888899
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 426 (462)
|.+.|++++|+..++++.. +.+...|..+..+|...|++ +.|...|++++++.|++..++..++.++.+.|+++++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF-ESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988743 34688888999999999999 99999999999999999999999999999999998877
Q ss_pred H-HHHHHh
Q 012504 427 E-LMVAIN 433 (462)
Q Consensus 427 ~-~~~~~~ 433 (462)
+ .++.|-
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 455553
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.34 E-value=1.6e-06 Score=68.53 Aligned_cols=103 Identities=15% Similarity=0.022 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC----------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYN----------------IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
...+......+.+.|++++|...|........ -+.+...|..+..+|.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556666677777777777777777765300 01113445555555556666666665555542
Q ss_pred C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 367 T--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 367 ~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
. +.+...|..+..++...|++ +.|...++++.++.|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~-~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKL-DEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcH-HHHHHHHHHHHhcCCCCH
Confidence 1 23455555555556666666 666666666666655554
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=0.00011 Score=64.65 Aligned_cols=128 Identities=10% Similarity=0.052 Sum_probs=67.8
Q ss_pred HcCCChh-HHHHHHHHhHHCCCCCCHH-HHHHHHHHHhcccc----------hHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 178 VACDSPS-DALKVFHRMKLANESPNSV-TLVSLVSACTSLIN----------VRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 178 ~~~~~~~-~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
.+.|.++ +|+.+++.+... .|+.. .++.--..+...+. ++++..+++.+.... +.+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455554 788888888774 34433 34433333322222 455566666666554 445556655555
Q ss_pred HHHhcC--ChHHHHHHHhhccC---CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012504 246 MYSKCG--HVEKAFKVFNLMRE---KNLQSWTIMISGLADNGR-GNYAISLFAKMIQTGLKPDSISFSAI 309 (462)
Q Consensus 246 ~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 309 (462)
++...| .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.++++.+..+. |...|+..
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R 185 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYR 185 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 555555 35666666666553 234455555555555555 35666666666655322 34444433
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=1.5e-06 Score=65.55 Aligned_cols=109 Identities=6% Similarity=-0.088 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCC----HHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-----EPN----AVIL 374 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~ 374 (462)
..+..+...+...|++++|...+++.... .+.+...+..+...|...|++++|...++++.. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666677777788888888888887764 234566777777778888888888887777632 112 5667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
..+...+...|++ +.|...++++.+..| ++.....+..+.
T Consensus 83 ~~la~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKY-KDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccH-HHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 7777777788888 888888888887777 454555554443
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.33 E-value=2.3e-06 Score=65.97 Aligned_cols=62 Identities=10% Similarity=-0.081 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKL-------EPELGANY----VLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
.|..+..++...|++ ++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~-~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSF-DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777777888888888 8888888888888 88888888 88888888888888888888877653
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=6.3e-06 Score=60.07 Aligned_cols=100 Identities=12% Similarity=-0.060 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC--CHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EP--NAVILRSFLG 379 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~~l~~ 379 (462)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++... +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555556666667777777777776653 223455666677777777777777777766522 23 4667777777
Q ss_pred HHHHc-CChHHHHHHHHHHHHhcCCCCC
Q 012504 380 ACRNH-GQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 380 ~~~~~-~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++... |++ +.|.+.++++.+..|+++
T Consensus 85 ~~~~~~~~~-~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKE-VEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCS-HHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCH-HHHHHHHHHHhhcccCCC
Confidence 77777 777 777777777777777654
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=1.1e-05 Score=60.59 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
..+..++...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3334444444444444444444443
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.31 E-value=1.1e-05 Score=72.17 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=83.2
Q ss_pred CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHH
Q 012504 150 KEIDVAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHS 226 (462)
Q Consensus 150 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 226 (462)
+++++|...++.... | +...+..+...+.+.|++++|+..|++..... |+...+ ..+.+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~-- 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA-- 191 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH--
Confidence 334444444444332 1 34466677777777788888888877776642 222000 00000000
Q ss_pred HHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 012504 227 YAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS 303 (462)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 303 (462)
. +.....+..+..+|.+.|++++|+..+++..+ .+..+|..+..+|...|++++|...|++..+.. +-+.
T Consensus 192 --~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~ 264 (336)
T 1p5q_A 192 --Q----ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK 264 (336)
T ss_dssp --H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH
T ss_pred --H----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 0 01134455555566666666666666655542 234556666666666666666666666666542 1234
Q ss_pred HHHHHHHHHhhccCcHHHH-HHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEG-KNYFDEMA 330 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a-~~~~~~~~ 330 (462)
..+..+..++...|+.+++ ...|+.|.
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665 33444444
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.28 E-value=2.4e-06 Score=76.64 Aligned_cols=151 Identities=13% Similarity=-0.040 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 45667777788888899999888888764 343321 233444444433221 1367888889
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh-hcCCHHHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSS-LSGNWDTA 425 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 425 (462)
|.+.|++++|+..+++... +.+...|..+..+|...|++ +.|...|+++.++.|+++.++..+..+.. ..+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~-~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM-DSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-HHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988732 34678888899999999999 99999999999999999988888887744 45777888
Q ss_pred HHHHHHHhcCCCccC
Q 012504 426 AELMVAINQKGLNKV 440 (462)
Q Consensus 426 ~~~~~~~~~~~~~~~ 440 (462)
...|+.|........
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 889988876655443
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.00045 Score=60.79 Aligned_cols=95 Identities=11% Similarity=-0.034 Sum_probs=47.9
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc--chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC-hHHHHHH
Q 012504 183 PSDALKVFHRMKLANESPNSVTLVSLVSACTSLI--NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH-VEKAFKV 259 (462)
Q Consensus 183 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 259 (462)
+++++.+++.+.... +-+..+|+.-.-.+...+ +++++..+++.+.+.. +-|..+|+.-..+....|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345555555555432 224444444444444444 3556666666666554 4455555555555555555 3556665
Q ss_pred HhhccC---CChhhHHHHHHHHH
Q 012504 260 FNLMRE---KNLQSWTIMISGLA 279 (462)
Q Consensus 260 ~~~~~~---~~~~~~~~l~~~~~ 279 (462)
+.++.+ .|..+|+.....+.
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH
Confidence 555543 23345554444433
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=3.6e-06 Score=63.42 Aligned_cols=111 Identities=8% Similarity=0.027 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC-CCc----hhHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNI-KPT----MEHYG 343 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 343 (462)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++.......- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 355666677777777777777777777653 234556666677777777777777777777654111 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFLGA 380 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 380 (462)
.+..+|...|++++|.+.|+++.. .|+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777777777777777777776532 3455544444433
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.26 E-value=5.7e-07 Score=66.76 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=53.2
Q ss_pred cCcHHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHH
Q 012504 316 LGLVDEGKNYFDEMARVYN--IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a 391 (462)
.|++++|+..|++..+. + -+.+...+..+..+|...|++++|++.|++... +.+...+..+..++...|++ ++|
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY-EQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH-HHH
Confidence 46666777777776642 1 122355566666667777777777776666532 23455666666666777777 777
Q ss_pred HHHHHHHHhcCCCCCc
Q 012504 392 DNLGKLLLKLEPELGA 407 (462)
Q Consensus 392 ~~~~~~~~~~~p~~~~ 407 (462)
...++++.+..|+++.
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 7777777766666653
No 179
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.26 E-value=2e-06 Score=70.61 Aligned_cols=120 Identities=10% Similarity=0.016 Sum_probs=77.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC---CCh----------------hhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE---KNL----------------QSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
...+..+...+...|++++|...|++..+ .+. ..|..+..+|...|++++|+..+++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566667777777777777776553 122 56667777777788888888888777765
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 298 GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
. +.+...+..+..++...|++++|...|++.... .+.+...+..+..++...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234566777777777778888888888777653 1234556666666666666555554
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=5e-06 Score=65.27 Aligned_cols=128 Identities=13% Similarity=-0.024 Sum_probs=72.2
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHH
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN----AVI 373 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~ 373 (462)
+..+...+...|++++|...+++......-.++ ..++..+...+...|++++|.+.+++... .++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 333444444445555555544444332100011 12445555556666666666666555421 111 345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------CCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPE------LGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+..+...+...|++ +.|...++++.+..+. ...++..++.++...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDY-EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55666777777777 7777777777654221 134567788888888888888888887654
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=7.1e-06 Score=61.15 Aligned_cols=96 Identities=8% Similarity=-0.043 Sum_probs=56.6
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHG 385 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 385 (462)
.+...+...|++++|...+++..+. -+.+...|..+..++...|++++|+..|++... +.+...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444555666677777777666653 123456666666666677777777776666532 234556666666777777
Q ss_pred ChHHHHHHHHHHHHhcCCCCC
Q 012504 386 QVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++ ++|...++++.+..|++.
T Consensus 100 ~~-~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NA-NAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HH-HHHHHHHHHHHC------
T ss_pred CH-HHHHHHHHHHHHhCcCCC
Confidence 77 777777777777666543
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=2.1e-05 Score=59.08 Aligned_cols=91 Identities=11% Similarity=0.021 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC---CchHHHHHHHH
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPT-EPN-A---VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL---GANYVLAASVS 416 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~-~~~-~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 416 (462)
+...+...|++++|...|+.+.. .|+ . ..+..+..++...|++ +.|...++++.+..|++ +.++..++.++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF-QLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 44455556666666666655421 121 1 3444555556666666 66666666666666655 44455566666
Q ss_pred hhcCCHHHHHHHHHHHhcCC
Q 012504 417 SLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~ 436 (462)
...|++++|...|+.+.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 66666666666666555443
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=4.3e-05 Score=71.10 Aligned_cols=183 Identities=7% Similarity=-0.083 Sum_probs=98.3
Q ss_pred HHHHHhcCChhHHHHHHhcCCCC-----C---------------hhhHHHHHHHHHcCCChhHHHHHHHHhHHC-CCCCC
Q 012504 143 LRMYAACKEIDVAKAVFEEMPVR-----D---------------VVSWSSMIAGFVACDSPSDALKVFHRMKLA-NESPN 201 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~~-----~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~ 201 (462)
...+.+.|++++|++.|..+... + ..++..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44566777888888777765421 0 013556677777777777777777766442 11112
Q ss_pred HH----HHHHHHHHHhcccchHhHHHHHHHHHHh----CC-CchHhHHHHHHHHHHhcCChHHHHHHHhhccC-------
Q 012504 202 SV----TLVSLVSACTSLINVRAGESIHSYAVVN----GL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMRE------- 265 (462)
Q Consensus 202 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------- 265 (462)
.. ..+.+-..+...|+.+.+..++...... +. ..-..++..+...|...|++++|..+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 1222223334556677777666665442 11 12234556666667777777777666665431
Q ss_pred -C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHhhccCcHHHHHHH
Q 012504 266 -K-NLQSWTIMISGLADNGRGNYAISLFAKMIQT--GLK-P-D--SISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 266 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~-p-~--~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
+ ...++..++..|...|++++|...+++.... .+. | . ...+..+...+...+++++|...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0 1235666666666666666666666665432 111 1 1 12334444445555666555543
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.19 E-value=8.5e-06 Score=73.95 Aligned_cols=136 Identities=10% Similarity=-0.076 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDM 348 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 348 (462)
.+..+...+.+.|++++|+..|++..+. .++.. .... .+... ...| +...|..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHHH
Confidence 4666666777777777777777766542 00000 0000 11111 1122 35678889999
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 426 (462)
|.+.|++++|++.++++.. +.+...+..+..+|...|++ ++|...++++.++.|++..++..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY-DQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988743 34678888999999999999 99999999999999999999999999998888888776
Q ss_pred HH
Q 012504 427 EL 428 (462)
Q Consensus 427 ~~ 428 (462)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=4.5e-06 Score=65.96 Aligned_cols=94 Identities=10% Similarity=-0.008 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQT--------GL--------KP-DSISFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
.+......+.+.|++++|+..|.+.... .. .| +...|..+..++.+.|++++|...++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555555555555555555442 00 11 1234444455555555555555555555542
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 333 YNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
-+.+...|..+..+|...|++++|...|++.
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 1223445555555555555555555555544
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.12 E-value=2.3e-06 Score=63.39 Aligned_cols=83 Identities=19% Similarity=0.105 Sum_probs=47.2
Q ss_pred cCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHH
Q 012504 352 AGLIEEAYHIIRNMPTE----P-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 352 ~~~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 426 (462)
.|++++|+..|++.... | +...+..+..+|...|++ +.|...++++.+..|+++.++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY-RKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555666666554321 2 234555556666666666 66666666666666666666666666666666666666
Q ss_pred HHHHHHhcC
Q 012504 427 ELMVAINQK 435 (462)
Q Consensus 427 ~~~~~~~~~ 435 (462)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655543
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.1e-06 Score=64.23 Aligned_cols=94 Identities=15% Similarity=0.019 Sum_probs=75.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------CchH
Q 012504 338 TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------GANY 409 (462)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 409 (462)
+...+..+...+...|++++|.+.|++... +.+...+..+..++...|++ +.|...++++.+..|++ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY-TQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 455677788888888999999888887632 34677888888999999999 99999999999999988 6677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHH
Q 012504 410 VLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
..++.++...|++++|+..++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 77888888888777776655543
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=1.8e-05 Score=61.94 Aligned_cols=60 Identities=10% Similarity=-0.085 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT----EP----NAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.+..+...+...|++++|.+.+++... .. ....+..+...+...|++ +.|...++++.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH-DQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHH
Confidence 344455555555555555555544311 01 123455566666777777 7777777766654
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.11 E-value=1.6e-05 Score=56.78 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 369 PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
.+...+..+...+...|++ +.|...++++.+..|+++.+|..++.+|...|++++|++.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNA-SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567777888888888888 88888888888888888888888888888888888888888877643
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.05 E-value=0.00038 Score=66.79 Aligned_cols=168 Identities=8% Similarity=-0.038 Sum_probs=127.3
Q ss_pred hHHHHHHHhhccCC---ChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC--
Q 012504 253 VEKAFKVFNLMREK---NLQSWTIMISGLADNGR----------GNYAISLFAKMIQTGLKPDSISFSAILSACSHLG-- 317 (462)
Q Consensus 253 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-- 317 (462)
.++|++.++++.+. +..+|+.-...+...|+ ++++++.++++.....+ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 45667777776642 33556665556666666 88899999999886433 5667777666777778
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc----------
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG-LIEEAYHIIRNMPT--EPNAVILRSFLGACRNH---------- 384 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---------- 384 (462)
+++++...++++.+. -+-+...|+.-..++.+.| .++++++.++++.. .-+...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999874 2446777887777788888 88999999988854 24677787777666653
Q ss_pred ----CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH
Q 012504 385 ----GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 385 ----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
+.+ +++.+.++++....|++..+|..+...+.+.|+.++
T Consensus 202 ~~~~~~~-~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVL-LKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHH-HHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHH-HHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 456 899999999999999999999999999999888555
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=3.4e-05 Score=72.28 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=97.2
Q ss_pred HhhccCcHHHHHHHHHHHHHhcC--CC---Cc-hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYN--IK---PT-MEHYGCMVDMLGRAGLIEEAYHIIRNMP---------TEPN-AVILR 375 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~~~ 375 (462)
.+..+|++++|+.++++...... +. |+ ..+++.|..+|...|++++|+.++++.. .+|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999998888765421 22 22 5778999999999999999999888762 2344 45788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 376 SFLGACRNHGQVLYLDDNLGKLLLK-----LEPELGA---NYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 376 ~l~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
.|...|...|++ ++|+.+++++.+ ++|+.+. ....+..++...|.+++|..+++.+++.
T Consensus 398 nLa~~~~~~G~~-~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHI-EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999 999999999886 4677664 4557888888999999999999998763
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.02 E-value=1.8e-05 Score=70.88 Aligned_cols=152 Identities=12% Similarity=0.012 Sum_probs=82.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL 316 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 316 (462)
...+..+...+.+.|++++|...|++..+.+.... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888999999999999999998764322211 1222333334332221 13677788888999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHH-HcCChHHHHHH
Q 012504 317 GLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGACR-NHGQVLYLDDN 393 (462)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~-~~~~~~~~a~~ 393 (462)
|++++|...+++.... -+.+...|..+..+|...|++++|...|+++.. .| +...+..+..... ..+.. +.+..
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~-~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY-QKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 9999999999998864 234578888999999999999999999998854 34 3445555554433 34555 88888
Q ss_pred HHHHHHhcCCCCC
Q 012504 394 LGKLLLKLEPELG 406 (462)
Q Consensus 394 ~~~~~~~~~p~~~ 406 (462)
.+.++.+..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999988888765
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=1.9e-05 Score=60.86 Aligned_cols=72 Identities=13% Similarity=-0.056 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C-------CC-CHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMP-T-------EP-NAVIL----RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~-~-------~~-~~~~~----~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
.|..+..++.+.|++++|+..+++.. . .| +...| .....++...|++ ++|...|+++.++.|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~-eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG-AEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH-HHHHHHHHHHHhcCCCcHH
Confidence 67777777777888777777776642 1 34 45677 8889999999999 9999999999999999886
Q ss_pred hHHHHH
Q 012504 408 NYVLAA 413 (462)
Q Consensus 408 ~~~~l~ 413 (462)
....+.
T Consensus 138 ~~~~~~ 143 (159)
T 2hr2_A 138 ETPGKE 143 (159)
T ss_dssp CCTTHH
T ss_pred HHHHHH
Confidence 655444
No 194
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.96 E-value=5.9e-05 Score=52.76 Aligned_cols=73 Identities=18% Similarity=-0.017 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCCc
Q 012504 368 EPNAVILRSFLGACRNHGQ---VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPG 442 (462)
Q Consensus 368 ~~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 442 (462)
++++..+..+..++...++ . +.|..+++++++.+|+++.....++..+.+.|++++|+.+|+++.+.++. .|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~-~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMT-DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 3567778788887764444 6 99999999999999999999999999999999999999999999988766 443
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.95 E-value=4.1e-05 Score=53.30 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
...+..+...+...|++++|...+++... +.+...+..+..++...|++ +.|...++++.+..|+++..+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45666677777777888888877776532 33566777778888888888 8888888888888888887887777777
Q ss_pred hhcC
Q 012504 417 SLSG 420 (462)
Q Consensus 417 ~~~g 420 (462)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6544
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.94 E-value=4.1e-05 Score=71.73 Aligned_cols=99 Identities=6% Similarity=-0.083 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-C---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-N---------------AVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~---------------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
...+..+...|.+.|++++|+..|+++.. .| + ...|..+..+|.+.|++ +.|...+++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~-~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY-TKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHhc
Confidence 33455555666666666666666665422 11 1 57888899999999999 9999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 402 EPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 402 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.|+++.++..++.+|...|++++|+..|++..+..+.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999887654
No 197
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.94 E-value=4.8e-05 Score=71.64 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG 317 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 317 (462)
..+...+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3445567788999999999998764 356789999999999999999999999999863 235678888899999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HHhcCCHHHHHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDM--LGRAGLIEEAYHIIR 363 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 363 (462)
++++|...+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999998752 2234455556555 888899999999998
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=0.00013 Score=66.09 Aligned_cols=117 Identities=7% Similarity=-0.020 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccC-------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012504 240 GTALVEMYSKCGHVEKAFKVFNLMRE-------------------KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLK 300 (462)
Q Consensus 240 ~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 300 (462)
+..+...+.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 44455555556666666555555432 123456666777777777777777777776642 1
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 301 PDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 301 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
.+...+..+..++...|++++|...|++..+. .+.+...+..+..++...++.+++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 24556666666777777777777777776653 1223555555666666555555554
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.87 E-value=6.8e-05 Score=55.02 Aligned_cols=80 Identities=9% Similarity=-0.071 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 322 GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLL 399 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 399 (462)
|...|++..+. .+.+...+..+...|...|++++|...|++... +.+...|..+..++...|++ +.|...++++.
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR-AGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Confidence 45555555431 223355566666666666666666666665422 23455566666666666666 66666666666
Q ss_pred hcCCC
Q 012504 400 KLEPE 404 (462)
Q Consensus 400 ~~~p~ 404 (462)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 65543
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.84 E-value=0.00018 Score=54.85 Aligned_cols=89 Identities=7% Similarity=-0.096 Sum_probs=42.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh--
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL-- 418 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 418 (462)
|...|...+.+++|.+.|++.....++..+..|...|.. .++. ++|..+++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~-~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDL-RKAAQYYSKACGL--NDQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCH-HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccH-HHHHHHHHHHHcC--CCHHHHHHHHHHHHCCC
Confidence 333344444444444444444333344444444444444 4445 5555555555443 233445555555555
Q ss_pred --cCCHHHHHHHHHHHhcCC
Q 012504 419 --SGNWDTAAELMVAINQKG 436 (462)
Q Consensus 419 --~g~~~~A~~~~~~~~~~~ 436 (462)
.+++++|.+.|++..+.|
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 455555555555555444
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.82 E-value=1.2e-05 Score=61.88 Aligned_cols=98 Identities=7% Similarity=-0.023 Sum_probs=56.2
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNL 394 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 394 (462)
+.+.+++|...++...+. -+.+...|..+..++...++++.+...++ .+ ++|+..
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~-~eAi~~ 68 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MI-QEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HH-HHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HH-HHHHHH
Confidence 344566666666666543 12235555555555555554432222111 13 567777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHhhcC-----------CHHHHHHHHHHHhcCCC
Q 012504 395 GKLLLKLEPELGANYVLAASVSSLSG-----------NWDTAAELMVAINQKGL 437 (462)
Q Consensus 395 ~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~ 437 (462)
|+++++++|+...+|..++.+|...| ++++|++.|++..+.++
T Consensus 69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 77777777777777777777776653 67777777776665544
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=7.4e-05 Score=54.21 Aligned_cols=68 Identities=10% Similarity=-0.039 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+...+..+...+...|++ +.|...++++.+..|+++.++..++.++...|++++|++.+++..+..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLY-REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 456788888999999999 99999999999999999999999999999999999999999999877654
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.66 E-value=0.0013 Score=49.93 Aligned_cols=112 Identities=6% Similarity=-0.140 Sum_probs=90.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCHHH
Q 012504 282 GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AGLIEE 357 (462)
Q Consensus 282 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 357 (462)
+++++|.+.|++..+.| .|+.. +...|...+..++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 33443 666777778888899999988764 356677888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCC
Q 012504 358 AYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 358 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p 403 (462)
|.++|++.....++..+..|...|.. .++. ++|..+++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~-~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE-KQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCH-HHHHHHHHHHHHCCC
Confidence 99999988656678888888888888 7888 999999999888753
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.65 E-value=0.00016 Score=50.10 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+...+..+...+...|++ +.|...++++.+..|+++.++..++.++...|++++|+..+++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 356778888899999999 9999999999999999999999999999999999999999999887654
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.65 E-value=0.00034 Score=65.55 Aligned_cols=95 Identities=13% Similarity=0.011 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC-------C---C-hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE-------K---N-LQSWTIMISGLADNGRGNYAISLFAKMIQT-----GL- 299 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~- 299 (462)
..+++.|..+|...|++++|..++++..+ + + ..+++.|...|...|++++|..++++..+- |.
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555555666666666666555555431 1 1 135666666777777777777766665431 21
Q ss_pred CCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 300 KPDS-ISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 300 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
.|+. .+...+-.++...+.+++|+.+|..+.+
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 2344555566667777777777777754
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.64 E-value=0.00095 Score=64.07 Aligned_cols=155 Identities=10% Similarity=0.002 Sum_probs=121.7
Q ss_pred HcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc----------HHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 280 DNG-RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGL----------VDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 280 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
+.| ..++|++.++++...+.. +...|+.--.++...|+ ++++...++.+.+. -+-+..+|..-..+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL 116 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 344 446789999999986322 34456555555555565 89999999999874 34567888888888
Q ss_pred HHhcC--CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc----
Q 012504 349 LGRAG--LIEEAYHIIRNMPT--EPNAVILRSFLGACRNHG-QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS---- 419 (462)
Q Consensus 349 ~~~~~--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 419 (462)
+.+.| +++++++.++++.. +.+...|+.-..++...| .. +++.+.++++.+.+|.+..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~-~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP-AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH-HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 88889 77999999999843 457888888888888888 77 9999999999999999999999998888764
Q ss_pred ----------CCHHHHHHHHHHHhcCCCc
Q 012504 420 ----------GNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 420 ----------g~~~~A~~~~~~~~~~~~~ 438 (462)
+.+++++++++..+..++.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5678999999888765543
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.00039 Score=50.82 Aligned_cols=76 Identities=8% Similarity=-0.032 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 287 AISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 287 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
|+..|++..+.. +.+...+..+...+...|++++|...+++.... .+.+...|..+..+|...|++++|...|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444432 123344444555555555555555555555442 1222444455555555555555555555443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=0.00041 Score=53.31 Aligned_cols=125 Identities=11% Similarity=0.049 Sum_probs=82.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcH----------HHHHHHHHHHHHhcCCCCc-hhHHHHHHH
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLV----------DEGKNYFDEMARVYNIKPT-MEHYGCMVD 347 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 347 (462)
.+.+++++|.+.+++..+.. +.+...|..+..++...+++ ++|+..|++..+. .|+ ...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHH
Confidence 46678999999999999874 33677888888888888765 4777777776643 343 556666666
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHH
Q 012504 348 MLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAE 427 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 427 (462)
+|...|++ .|+... ..|++ ++|...|+++++++|++......+- ..++|-+
T Consensus 89 ay~~lg~l------------~P~~~~---------a~g~~-~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~e 139 (158)
T 1zu2_A 89 AYTSFAFL------------TPDETE---------AKHNF-DLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQ 139 (158)
T ss_dssp HHHHHHHH------------CCCHHH---------HHHHH-HHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHH
T ss_pred HHHHhccc------------Ccchhh---------hhccH-HHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHh
Confidence 66655543 233211 12678 9999999999999998762222222 2345555
Q ss_pred HHHHHhcCC
Q 012504 428 LMVAINQKG 436 (462)
Q Consensus 428 ~~~~~~~~~ 436 (462)
+.-.+...+
T Consensus 140 l~~~~~~~~ 148 (158)
T 1zu2_A 140 LHAEAYKQG 148 (158)
T ss_dssp HHHHHHHSS
T ss_pred ccCcccccc
Confidence 555554443
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.43 E-value=0.00019 Score=50.81 Aligned_cols=80 Identities=15% Similarity=-0.009 Sum_probs=58.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPT--EPNAV-ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 421 (462)
....+.+.|++++|.+.++++.. +.+.. .+..+..++...|++ +.|...++++.+..|+++.++.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW-QKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 45567778888888888877632 23556 778888888889999 99999999999999888866532 45
Q ss_pred HHHHHHHHHHHh
Q 012504 422 WDTAAELMVAIN 433 (462)
Q Consensus 422 ~~~A~~~~~~~~ 433 (462)
+.++...+++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 566666665443
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.34 E-value=0.0005 Score=48.60 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=56.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGA-NYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
....+...|++ +.|...++++.+..|+++. .+..++.+|...|++++|++.|++..+.++..
T Consensus 6 ~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDI-ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCH-HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 45678899999 9999999999999999999 99999999999999999999999998876543
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.33 E-value=0.0011 Score=47.07 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMA 330 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 330 (462)
.+..+...|...|++++|+..|++..+... .+...|..+..++...|++++|...|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444321 122334444444444444444444444443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.00044 Score=63.64 Aligned_cols=81 Identities=9% Similarity=-0.054 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCCC---chHHHHH
Q 012504 352 AGLIEEAYHIIRNMP---------TEPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKL-----EPELG---ANYVLAA 413 (462)
Q Consensus 352 ~~~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~ 413 (462)
.|++++|+.++++.. .+|+ ..+++.|..+|...|++ ++|+.+++++++. +|+++ ..+..|+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~-~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW-EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456666666665541 1222 35667777777777777 7777777777642 44443 4566777
Q ss_pred HHHhhcCCHHHHHHHHHHHh
Q 012504 414 SVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~ 433 (462)
.+|..+|++++|+.++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 77777788877777777654
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.11 E-value=0.021 Score=50.51 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=26.1
Q ss_pred CChhhHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 012504 266 KNLQSWTIMISGLA--DNG---RGNYAISLFAKMIQTGLKPD-SISFSAILSAC 313 (462)
Q Consensus 266 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~ 313 (462)
.++..|...+++.. ..+ +..+|..+|++..+. .|+ ...+..+..++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 45666776665543 222 346788888888875 444 33444444333
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.09 E-value=0.0012 Score=59.83 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=121.4
Q ss_pred CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIF 128 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (462)
+++.|.+.-++... ...|..|..+....+.+.+|++.|-+. -|+..|..++.++.+.|.++.-..++...+
T Consensus 40 ~ldRa~eyA~~~n~---p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 40 NLDRAYEFAERCNE---PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CSTTTTTSSSSCCC---CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred ccHHHHHHHHHhCC---ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45555554444432 234555666666666666665544211 145556666666666666666666555444
Q ss_pred HhCCCCccchHhHHHHHHHhcCChhH----------------------------HHHHHhcCC-----------------
Q 012504 129 KVGLDSDKYIGNTLLRMYAACKEIDV----------------------------AKAVFEEMP----------------- 163 (462)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------A~~~~~~~~----------------- 163 (462)
+..-.| .+=+.|+-+|++.+++.+ |.-+|..+.
T Consensus 111 k~~ke~--~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 111 KKARES--YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp TTCCST--TTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred HHhccc--ccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 432222 222455556666555444 333333332
Q ss_pred -------CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCch
Q 012504 164 -------VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELD 236 (462)
Q Consensus 164 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 236 (462)
..++.+|..+-.+|...+.+..|.-.--.+.-. || ....++..|-..|-+++.+.+++.-.... +..
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAH 262 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAH 262 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chh
Confidence 124556666666666666665554443333211 11 11223444566677777666666655322 456
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC----C-------ChhhHHHHHHHHHHcCChHHHHH
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE----K-------NLQSWTIMISGLADNGRGNYAIS 289 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~ 289 (462)
..+|+-|.-.|++- ++++..+.++.... | ....|..++-.|++-.+++.|..
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 67788887777764 56666666665443 1 23468888888888888887653
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.05 E-value=0.0015 Score=60.21 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=52.1
Q ss_pred HHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCCC---ch
Q 012504 347 DMLGRAGLIEEAYHIIRNMPT---------EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKL-----EPELG---AN 408 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~ 408 (462)
..+.+.|++++|+.++++... .|+ ..+++.+..+|...|++ ++|+.+++++++. +|+++ ..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~-~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL-EEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334456677777766655411 111 34566666777777777 7777777776642 34443 34
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 409 YVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
+..|+..|..+|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777777776554
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.02 E-value=0.0044 Score=57.02 Aligned_cols=93 Identities=8% Similarity=-0.141 Sum_probs=70.3
Q ss_pred ccCcHHHHHHHHHHHHHhc--CCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVY--NIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMP---------TEPN-AVILRSFL 378 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 378 (462)
..|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.++++.. .+|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888888776531 12222 5778889999999999999999888762 2344 45788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHh-----cCCCCCch
Q 012504 379 GACRNHGQVLYLDDNLGKLLLK-----LEPELGAN 408 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 408 (462)
..|...|++ ++|+.+++++.+ .+|+.+.+
T Consensus 390 ~~~~~qg~~-~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENK-AAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCH-HHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999 999999999886 36777643
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.01 E-value=0.012 Score=52.02 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=95.4
Q ss_pred CCCCHHHHHHHHHHhhc-----cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHh---cC-----C---HHHHHHH
Q 012504 299 LKPDSISFSAILSACSH-----LGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGR---AG-----L---IEEAYHI 361 (462)
Q Consensus 299 ~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-----~---~~~A~~~ 361 (462)
.+.+...|...+++... ..+..+|..+|++..+. .|+ ...|..+..+|.- .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35567778877766432 34468899999999864 565 4455544444421 11 1 1122222
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 362 IRNMPT-EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 362 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
...+.. +.++.++..+...+...|++ +.|...++++..++|+ ...|..++.++.-.|++++|.+.+++....++.+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~-d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKT-DESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 222222 45788888888888888999 9999999999999964 5567788999999999999999999988877654
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.99 E-value=0.017 Score=58.34 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=49.9
Q ss_pred HHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 247 YSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 344566666666655442 345666666666666666666666665532 222333333344544444443
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 327 DEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
+..... + -++.-..+|.+.|++++|++++.++.
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 333321 1 12222333444555555555555543
No 219
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.95 E-value=0.3 Score=46.96 Aligned_cols=249 Identities=10% Similarity=-0.002 Sum_probs=133.7
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchH
Q 012504 140 NTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVR 219 (462)
Q Consensus 140 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 219 (462)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3445566778888888887776 44455555666677777888777777777665554 334555666666666555432
Q ss_pred h--HHHHHHHHHHhC-----------CCchHh-HHHHHHHHHHhcCChHHHHHHHhhccCCChh---hHHHHHHHHHHcC
Q 012504 220 A--GESIHSYAVVNG-----------LELDVA-LGTALVEMYSKCGHVEKAFKVFNLMREKNLQ---SWTIMISGLADNG 282 (462)
Q Consensus 220 ~--a~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~ 282 (462)
. ...-+..+...| ++++.. ....++..+. +...+....... .++.. .+...+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 2 222222222222 112211 1111222111 122222222221 11111 11112233333 3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH
Q 012504 283 RGNYAISLFAKMIQTGLKPDSI----SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 358 (462)
+.+.|...+......+ ..+.. ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 7788999988886543 22332 2223333344455345556666655432 23333344445555677999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 359 YHIIRNMPTEP--NAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 359 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
...|+.|...+ ...-..-+..++...|+. ++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~-~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGRE-AEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH-HHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCH-HHHHHHHHHHhc
Confidence 99999997642 233333456677888999 999999998875
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.82 E-value=0.01 Score=54.67 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=73.1
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhc--CCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHH
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVY--NIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMP---------TEPN-AVI 373 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~ 373 (462)
+..+...|++++|+.++++..... -+.|+ ..+++.+..+|...|++++|+.+++++. ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888876431 12222 5678888889999999999988888762 1343 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh-----cCCCCCchH
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLK-----LEPELGANY 409 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 409 (462)
++.|...|...|++ ++|..+++++.+ .+|+.+.+-
T Consensus 374 l~nLa~~~~~~g~~-~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMF-PQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 88889999999999 999999999886 377776443
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.76 E-value=0.1 Score=52.63 Aligned_cols=154 Identities=10% Similarity=0.062 Sum_probs=100.0
Q ss_pred HHHHhCCCchhHHH-HHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 74 RAYAKTSCSIESIK-LFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 74 ~~~~~~g~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
......+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.. ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence 34455778888766 44211 11223366777777888888877655321 1224456788999
Q ss_pred hHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC
Q 012504 153 DVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG 232 (462)
Q Consensus 153 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 232 (462)
+.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999988774 567899999999999999999999998754 3445555555677776666655555544
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhh
Q 012504 233 LELDVALGTALVEMYSKCGHVEKAFKVFNL 262 (462)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 262 (462)
. ++....+|.+.|++++|.+++.+
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 22333445566777776666543
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.69 E-value=0.0088 Score=50.71 Aligned_cols=87 Identities=10% Similarity=0.029 Sum_probs=63.4
Q ss_pred HHHHHHHHHhCCC-CCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhcCCCC-CchHHHHHHHHhhc-CCHH
Q 012504 355 IEEAYHIIRNMPT-EPN---AVILRSFLGACRN-----HGQVLYLDDNLGKLLLKLEPEL-GANYVLAASVSSLS-GNWD 423 (462)
Q Consensus 355 ~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~-----~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~ 423 (462)
...|...+++... .|+ ...|..+...|.. -|+. ++|++.|+++++++|+. ..++...+..+++. |+.+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~-ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM-EKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH-HHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3455555555422 344 4567777777777 4888 88889999998888875 88888888888874 8888
Q ss_pred HHHHHHHHHhcCCCccCCc
Q 012504 424 TAAELMVAINQKGLNKVPG 442 (462)
Q Consensus 424 ~A~~~~~~~~~~~~~~~~~ 442 (462)
+|.+++++..+..+...|.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHcCCCCCCCC
Confidence 8888888888877774343
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.68 E-value=0.013 Score=41.70 Aligned_cols=73 Identities=15% Similarity=-0.024 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT---------EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANY 409 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 409 (462)
..-+..|...+.+.|+++.|...|+.+.. .+...++..+..++.+.|++ +.|...++++.+..|+++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~-~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL-DKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH-HHHHHHHHHHHhcCCCCHHHH
Confidence 33444566666666666666666655411 23467788888899999999 999999999999999887654
Q ss_pred HHH
Q 012504 410 VLA 412 (462)
Q Consensus 410 ~~l 412 (462)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.17 Score=39.38 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=63.1
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHH
Q 012504 143 LRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGE 222 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 222 (462)
+......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44556677777777777665 3566777777777778888877777776543 333444455556666555
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012504 223 SIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
.+-+.....| . ++.....+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5544444443 1 2233334455567777766665543
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.45 E-value=0.16 Score=37.21 Aligned_cols=148 Identities=12% Similarity=0.038 Sum_probs=93.3
Q ss_pred HHHHHHH--HHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHH
Q 012504 69 YNTLIRA--YAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMY 146 (462)
Q Consensus 69 y~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (462)
...|+.+ +.-.|..++..++..+..... +..-||.+|-.....-+-+-..++++.+-+. -|.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi---------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL---------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------
Confidence 3444443 345788888888888777642 4555666665555544444444444433221 122
Q ss_pred HhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHH
Q 012504 147 AACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHS 226 (462)
Q Consensus 147 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 226 (462)
..+|++......+-.+.. +....+..+.....+|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 133444444444433322 3335566677778888888888888885443 46888888888999999999999999998
Q ss_pred HHHHhCCC
Q 012504 227 YAVVNGLE 234 (462)
Q Consensus 227 ~~~~~~~~ 234 (462)
+.-+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 88888854
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.44 E-value=0.16 Score=37.17 Aligned_cols=142 Identities=10% Similarity=0.067 Sum_probs=101.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..++++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 44567788888888777764 24556666766555666666667777766443222 23455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 358 AYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 358 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
....+-.+. .+.......+......|+. +.-..++..+....|.++.....++.+|.+.|+..+|.+++.+.-++|+
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~Kk-DqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKR-DKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCH-HHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccH-hHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 555555554 2445556667888899999 8888898887777777888999999999999999999999999999987
Q ss_pred cc
Q 012504 438 NK 439 (462)
Q Consensus 438 ~~ 439 (462)
..
T Consensus 157 kE 158 (172)
T 1wy6_A 157 KE 158 (172)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.35 E-value=0.0044 Score=47.04 Aligned_cols=91 Identities=9% Similarity=-0.073 Sum_probs=71.3
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhCCC-C-C--CHHHHHHHHHHHHHcCCh
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG---LIEEAYHIIRNMPT-E-P--NAVILRSFLGACRNHGQV 387 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~-~--~~~~~~~l~~~~~~~~~~ 387 (462)
.......+.+.|.+.... + +++..+...+..++++.+ +.++++.+|++... . | ....+..+.-++.+.|++
T Consensus 10 ~~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CHHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 345667788888877663 3 478888888999999988 66799999988743 2 4 345666778889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCch
Q 012504 388 LYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~~~~~ 408 (462)
+.|.++++.+++.+|++..+
T Consensus 88 -~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 88 -EKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp -HHHHHHHHHHHHHCTTCHHH
T ss_pred -HHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999988633
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.29 E-value=0.014 Score=41.54 Aligned_cols=68 Identities=10% Similarity=-0.063 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE-------PELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+..-+..+...+...+++ ..|...++.+.+.. +..+.++..|+.++.+.|++++|+.++++..+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y-~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADY-YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccch-HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 445566788999999999 99999999998752 233567889999999999999999999998875543
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.28 E-value=0.016 Score=44.00 Aligned_cols=80 Identities=10% Similarity=-0.080 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---cHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCHHHH
Q 012504 284 GNYAISLFAKMIQTGLKPDSISFSAILSACSHLG---LVDEGKNYFDEMARVYNIKP--TMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A 358 (462)
...+.+-|.+..+.|. ++..+...+..++.+++ +.+++..+++.+.+. . .| +...+..|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4455666666666544 56666666666777766 666888888887775 2 23 355566667777888888888
Q ss_pred HHHHHhCC
Q 012504 359 YHIIRNMP 366 (462)
Q Consensus 359 ~~~~~~~~ 366 (462)
.+.++.+.
T Consensus 91 ~~y~~~lL 98 (152)
T 1pc2_A 91 LKYVRGLL 98 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887763
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.09 E-value=0.00016 Score=65.39 Aligned_cols=236 Identities=8% Similarity=0.032 Sum_probs=163.1
Q ss_pred ccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc
Q 012504 135 DKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTS 214 (462)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 214 (462)
.+.+|..|..+....+.+.+|++.|=+. .|+..|..++....+.|.+++-++++...++..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4467788888888888888877766433 456677788888888888888888887666653333 333467888888
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC------------------------CChhh
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE------------------------KNLQS 270 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~ 270 (462)
.+++.+.++++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 88776644432 135666666777778888888888777766541 35678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNI-KPTMEHYGCMVDML 349 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (462)
|..+-.+|...+.+.-|.-.--.++- .|| -...++..|...|.+++-+.+++.-. |+ ....-+|+-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 99999999999988776555444432 222 23345667888899999888888776 33 34577888888888
Q ss_pred HhcCCHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHHcCChHHHH
Q 012504 350 GRAGLIEEAYHIIRNMPTE----------PNAVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~a 391 (462)
++- ++++..+.++..-.+ .....|..++-.|....++ +.|
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~-DnA 323 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-DNA 323 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCH-HHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhH-HHH
Confidence 765 667777766654221 2345677888888888888 544
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.08 E-value=0.067 Score=36.95 Aligned_cols=70 Identities=11% Similarity=-0.101 Sum_probs=49.7
Q ss_pred CCchhHHHHHHHHHHhcCC---HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 336 KPTMEHYGCMVDMLGRAGL---IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+.++..+..+..++...++ .++|..++++... +.++.....+...+...|++ +.|...++++.+..|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y-~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF-QEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCc
Confidence 3456667777777654444 6788888877632 34567777777788888888 888888888888888743
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.40 E-value=0.28 Score=35.78 Aligned_cols=93 Identities=8% Similarity=-0.076 Sum_probs=62.9
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHHcCCh
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE---AYHIIRNMPTE--P--NAVILRSFLGACRNHGQV 387 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~ 387 (462)
.......+.+.|...... + .++..+--.+..++.+..+... ++.+++++... | .......|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455556666655443 3 3666676677777877776555 77888776543 3 223445566788999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHH
Q 012504 388 LYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
+.|.+.++.+++..|++..+..
T Consensus 91 -~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 91 -EKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHH
T ss_pred -HHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999998865443
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.089 Score=51.57 Aligned_cols=55 Identities=11% Similarity=0.014 Sum_probs=51.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
...|...|++ +.|..+.+++....|.+-.+|..|+.+|...|+++.|+-.+..+.
T Consensus 344 a~FLl~K~~~-elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDY-ELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcH-HHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456788999 999999999999999999999999999999999999999999886
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.79 Score=35.70 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=70.8
Q ss_pred HHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 012504 246 MYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345667777777666554 3456677777777777777777777766542 23333334455666555544
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 326 FDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLL 398 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 398 (462)
-+..... | -++.-...+.-.|+++++.++|.+...-|.... .....|-. +.|.++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~-~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDE-AAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCH-HHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcH-HHHHHHHHHh
Confidence 4443332 1 134444555667777777777777653221111 11224444 6666666554
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.85 E-value=0.22 Score=37.39 Aligned_cols=102 Identities=10% Similarity=0.049 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHhhccCcH------HHHHHHHHHHHHhcCCCCch-hHHHHHHHH------HHhcCCHHHHHHHHHhCCC-
Q 012504 302 DSISFSAILSACSHLGLV------DEGKNYFDEMARVYNIKPTM-EHYGCMVDM------LGRAGLIEEAYHIIRNMPT- 367 (462)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~A~~~~~~~~~- 367 (462)
|..++-..+....+.|++ ++..++|++... .++|+. ..|...+.. +...++.++|.++|+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444565555555555666 666677776665 455542 111111111 1233566666666655521
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 368 -EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 368 -~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+.-..+|-.....-.+.|+. ..|..++.++..+.|.+.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl-~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNV-KKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTCBCH
T ss_pred hHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHhccCCCcH
Confidence 11255555555555566666 666666666666665544
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.34 E-value=0.067 Score=39.00 Aligned_cols=84 Identities=8% Similarity=-0.141 Sum_probs=62.6
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHhhcCCHHHHH
Q 012504 354 LIEEAYHIIRNMP--TEPNAVILRSFLGACRNHGQVLYL---DDNLGKLLLKLE-P-ELGANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 354 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~ 426 (462)
....+.+-|.+.. ..++..+-..+..++.+..+. .. ++.+++.+.+.. | ..-.....|+.++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~-~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH-HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444432 247778877888888888877 55 888888888766 4 34467888999999999999999
Q ss_pred HHHHHHhcCCCc
Q 012504 427 ELMVAINQKGLN 438 (462)
Q Consensus 427 ~~~~~~~~~~~~ 438 (462)
++++.+.+..+.
T Consensus 95 ~~~~~lL~~eP~ 106 (126)
T 1nzn_A 95 KYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHhCCC
Confidence 999999876654
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.27 E-value=0.66 Score=39.42 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHh
Q 012504 270 SWTIMISGLADN-----GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL-GLVDEGKNYFDEMARV 332 (462)
Q Consensus 270 ~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~ 332 (462)
.|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.+++.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 455555555552 56666666666666542211244444455555553 5666666666666543
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.23 E-value=2.8 Score=44.01 Aligned_cols=164 Identities=12% Similarity=0.004 Sum_probs=108.8
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccCC--------------------------ChhhHHHHHHHHHHcCChHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMREK--------------------------NLQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~a~ 288 (462)
.++...-.++.+|..+|++++|...|++.... -..-|..++..+-+.+.++.+.
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444456778899999999999999876421 0123677788888999999999
Q ss_pred HHHHHHHHCCCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH------
Q 012504 289 SLFAKMIQTGLKPDS----ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEA------ 358 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------ 358 (462)
++-+...+....-+. ..|..+.+++...|++++|...+-.+... . --......|+...+..|..+.-
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r~~cLr~LV~~lce~~~~~~L~~lpf~ 996 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LKKSCLLDFVNQLTKQGKINQLLNYSMP 996 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SCHHHHHHHHHHHHHHCCHHHHHHHTTT
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HHHHHHHHHHHHHHhCCChhhhhCCCCc
Confidence 888877764222121 25777888899999999998888777542 2 2345677777777766655543
Q ss_pred ------HHHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 359 ------YHIIRNM-PT----EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 359 ------~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.+++..- .. ...+.-|..|..-+..+|++...|..+|+.+.++
T Consensus 997 gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 997 TLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 3333211 00 1122345555555677888867888888888775
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.22 E-value=0.83 Score=34.99 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=56.9
Q ss_pred HHHHHhcCChHHHHHHHhhccC-----CCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC-CHHHHHHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMRE-----KNL-------QSWTIMISGLADNGRGNYAISLFAKMIQTG-LKP-DSISFSAI 309 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~l 309 (462)
+..+...|.++.|+-+.+.+.. +++ .++..+..++...+++..|...|++..... .-+ +..+...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 5556666777777666665431 221 144555666777777777777777754321 111 11111111
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE 368 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 368 (462)
. .....+. .....++.+.--.+..+|.+.+++++|+.+++.++.+
T Consensus 107 ~---~~ss~p~-----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 107 G---NSASTPQ-----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred c---ccCCCcc-----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0 0000000 0022233445455778888888888888888888653
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.18 E-value=3.2 Score=43.59 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=36.8
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHh
Q 012504 140 NTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRM 193 (462)
Q Consensus 140 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 193 (462)
..++..+...+..+.+.++..-... +...--.+..++...|++++|.+.|.+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455666677777777776655544 4444455677888899999999998775
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.16 E-value=0.19 Score=45.47 Aligned_cols=64 Identities=14% Similarity=-0.032 Sum_probs=39.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc-----CCCccCC
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ-----KGLNKVP 441 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 441 (462)
++..+...|+. ..+...++.+...+|-+...+..++.++.+.|+..+|++.|+.+.+ .|+.|.|
T Consensus 177 ~~~~~l~~g~~-~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 177 KAEAEIACGRA-SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 44555566666 6666666666666666666666666666666666666666665432 3555544
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.04 E-value=5.4 Score=40.23 Aligned_cols=286 Identities=13% Similarity=0.012 Sum_probs=151.4
Q ss_pred HHHHHHhhhhcCchhH-HHH-HHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC----Chh--hHHHHHHH
Q 012504 105 PFVVKACGRCLLIGIG-GSV-HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR----DVV--SWSSMIAG 176 (462)
Q Consensus 105 ~~ll~~~~~~~~~~~a-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~l~~~ 176 (462)
.++.+++...|-.... ... .+++-+. ++....-....-+....|+.+++..+++..... +.. .-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3556677766643322 221 2233322 222222233344577889999999999887752 222 22334445
Q ss_pred HHcCCChhHHHHHHHHhHHCCC-------CCCHHHHHH--HHHHHhcccchHhHHHHHHHHHHhCCCchH--hHHHHHHH
Q 012504 177 FVACDSPSDALKVFHRMKLANE-------SPNSVTLVS--LVSACTSLINVRAGESIHSYAVVNGLELDV--ALGTALVE 245 (462)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 245 (462)
....|..+++..++.......- .+....-.. |.-++...++- ++...+..+.... .+.. ..-.++..
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGl 498 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGL 498 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhh
Confidence 6667766678887777554311 011122222 33333444443 4455555555432 1111 22234555
Q ss_pred HHHhcCChHHHHHHHhhccCC-C--hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHhhccCc
Q 012504 246 MYSKCGHVEKAFKVFNLMREK-N--LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI-SFS---AILSACSHLGL 318 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~---~ll~~~~~~~~ 318 (462)
.+...|+-+....+++.+.+. + +.-...+.-++...|+.+.+..+.+.+... .++. -|. .+.-+|+..|+
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCC
Confidence 566778877777777765432 2 222333444555778888888888888764 2332 232 33456788889
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCChHHHHHHHHH
Q 012504 319 VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRS--FLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~a~~~~~ 396 (462)
.....+++..+.. ....+......+.-++...|+.+.+.++++.+....++.+-.. +.-+....|.....+...+.
T Consensus 576 ~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 8777778888876 3233343333344444456666666677765543334333333 33333444444355666666
Q ss_pred HHH
Q 012504 397 LLL 399 (462)
Q Consensus 397 ~~~ 399 (462)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 664
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.90 E-value=1.1 Score=33.31 Aligned_cols=71 Identities=11% Similarity=0.037 Sum_probs=50.1
Q ss_pred CCchhHHHHHHHHHHhcCCH---HHHHHHHHhCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 336 KPTMEHYGCMVDMLGRAGLI---EEAYHIIRNMPT-EP--NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
.|+..+--.+..++.+..+. .+++.+++++.. .| .......|.-++.+.|++ +.|.++.+.+++.+|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y-~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-SMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH-HHHHHHHHHHHhcCCCcHH
Confidence 56777776777778777654 456777776532 23 234445566788899999 9999999999999998753
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.90 E-value=0.75 Score=34.52 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=41.1
Q ss_pred CCCcccHHHHHHHHHhCCCc------hhHHHHHHHHHHCCCCCCcc-hHHHHHHH------hhhhcCchhHHHHHHHHHH
Q 012504 63 TPPLFAYNTLIRAYAKTSCS------IESIKLFDEMLKTGLRPDNF-TYPFVVKA------CGRCLLIGIGGSVHSLIFK 129 (462)
Q Consensus 63 ~~~~~~y~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~ 129 (462)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .+..-+.. +...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35677777778777777888 7778888887764 555431 11111111 1233677777777777665
Q ss_pred h
Q 012504 130 V 130 (462)
Q Consensus 130 ~ 130 (462)
.
T Consensus 89 ~ 89 (161)
T 4h7y_A 89 N 89 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.53 E-value=0.5 Score=36.17 Aligned_cols=125 Identities=13% Similarity=-0.006 Sum_probs=64.8
Q ss_pred CCCCCCHH--HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 012504 297 TGLKPDSI--SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-------MEHYGCMVDMLGRAGLIEEAYHIIRNMP- 366 (462)
Q Consensus 297 ~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 366 (462)
.|+.|... ++..-++.+...+.++.|+-+.+.+....+.+|+ ..++..+.+++...+++..|...|++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555433 3444455666777777777777765544233333 1345556677777777777777776641
Q ss_pred ------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 367 ------TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 367 ------~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
..++..+ .+ ...... .. -. ..+.+.++...++.+|.+.|++++|+.+++.+..+.
T Consensus 92 ~~k~l~k~~s~~~--~~----~~~ss~-p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 92 QKKALSKTSKVRP--ST----GNSAST-PQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHCC-----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHhcCCCccc--cc----cccCCC-cc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 1111110 01 000000 00 00 112334567789999999999999999999765443
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.89 E-value=0.82 Score=31.47 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 283 RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+ +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4456677777777778899999999999999999999999999999877533 334567666643
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.60 E-value=1 Score=32.99 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=46.8
Q ss_pred CCchhHHHHHHHHHHhcCCH---HHHHHHHHhCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 336 KPTMEHYGCMVDMLGRAGLI---EEAYHIIRNMPT-EP--NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
.|+..+--.+..++.+..+. .+++.+++++.. .| ....+..|.-++.+.|++ +.|.++.+.+++..|++..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY-~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-SMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhhCCCCHHH
Confidence 45555655666667666554 456666666532 23 234555566678888888 88888888888888877543
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.22 E-value=6.8 Score=33.83 Aligned_cols=168 Identities=10% Similarity=0.023 Sum_probs=100.3
Q ss_pred HhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHH----HHHHhHHCCCCCCHHHHHHHHHHHhc
Q 012504 139 GNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALK----VFHRMKLANESPNSVTLVSLVSACTS 214 (462)
Q Consensus 139 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~l~~~~~~ 214 (462)
|.++..=|.+.+++++|++++..- ...+.+.|+...|-+ +.+...+.+.+++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345555677778888888776432 223455666655544 34555667788888888888877665
Q ss_pred ccchH-hHHHHHHHHH----HhCC--CchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHc---CCh
Q 012504 215 LINVR-AGESIHSYAV----VNGL--ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADN---GRG 284 (462)
Q Consensus 215 ~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 284 (462)
...-+ .-.++.+.++ +.|- .-++.....+...|.+.|++.+|...|-.-...+...+..++--+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 1233334443 3331 236778888999999999999999888743333555555555444443 333
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 285 NYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
.++-- ..-..++ .|.-.++...|..+++...+.
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 33211 1112222 344568888898888877653
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.29 E-value=1.6 Score=42.93 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=41.1
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
.|...|+++-|+.+-++... -.+.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35567888888888888875 233447888888888888888888888888875
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.61 E-value=12 Score=34.29 Aligned_cols=186 Identities=10% Similarity=0.061 Sum_probs=118.2
Q ss_pred CCChhHHHHHHHHhHHC-----CCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh-CCCchHh--HHHHHHHHHHhcC
Q 012504 180 CDSPSDALKVFHRMKLA-----NESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN-GLELDVA--LGTALVEMYSKCG 251 (462)
Q Consensus 180 ~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~~ 251 (462)
.|+++.|++.+..+.+. +..........++..|...|+++.....+.-+.+. |..+... ....++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37888898888666532 34445677888899999999999887777665543 3222221 1222233333333
Q ss_pred ChH--HHHHHHhhccC--CC---h-----hhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhh
Q 012504 252 HVE--KAFKVFNLMRE--KN---L-----QSWTIMISGLADNGRGNYAISLFAKMIQT--GLKPD---SISFSAILSACS 314 (462)
Q Consensus 252 ~~~--~a~~~~~~~~~--~~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~ 314 (462)
..+ .-..+...... .+ + .....|...|...|++.+|.+++.++... |.... ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322 23334433332 11 1 13456788899999999999999998743 32222 235566677888
Q ss_pred ccCcHHHHHHHHHHHHHh-cCC--CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 315 HLGLVDEGKNYFDEMARV-YNI--KPT--MEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
..+++..|..++.++... +.. +|+ ...+...+..+...+++.+|.+.|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987432 112 222 345677788888899999998887665
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.34 E-value=20 Score=36.28 Aligned_cols=250 Identities=9% Similarity=-0.003 Sum_probs=121.5
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHH--HHHHHHHHHhcccchHhHHHHHHHHHHhCC-------CchHh--HHHHHH
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSV--TLVSLVSACTSLINVRAGESIHSYAVVNGL-------ELDVA--LGTALV 244 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~--~~~~l~ 244 (462)
+....|+.++++.++......+...+.. .-..+.-+....|..+++..++.......- .+... ....|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566777777777776654321112222 222222233344444456666666554321 01111 222333
Q ss_pred HHHHhcCChHHHHHHHhh-ccCCChhh--HH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHhhccC
Q 012504 245 EMYSKCGHVEKAFKVFNL-MREKNLQS--WT--IMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAIL--SACSHLG 317 (462)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~-~~~~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~~ 317 (462)
-+|.-.++- ++.+.+.. +...+... .. ++...++-.|+.+....++..+.+. .+......+. -++...|
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCC
Confidence 444444543 33444433 33333221 22 2233344556766667777766653 1333333233 3344667
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHH--HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCChHHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYG--CMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLG--ACRNHGQVLYLDDN 393 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~a~~ 393 (462)
+.+.+..+.+.+.. ...|....-. .+.-+|+-.|+.....+++..+...++..+-...+. ++...|+. +.+.+
T Consensus 539 ~~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~-e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY-TTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-SSHHH
T ss_pred ChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-HHHHH
Confidence 77888888887765 2233332222 334456677787666668777754444443333333 33445666 55555
Q ss_pred HHHHHHhcCCCCCchHHHHHHHH--hhcCCH-HHHHHHHHHHhc
Q 012504 394 LGKLLLKLEPELGANYVLAASVS--SLSGNW-DTAAELMVAINQ 434 (462)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~-~~A~~~~~~~~~ 434 (462)
+++.+.+.. ++.+....+.++ ...|+. .+++.++..+..
T Consensus 616 lv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 555444422 333333333332 233332 678888887754
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.79 E-value=11 Score=32.74 Aligned_cols=167 Identities=11% Similarity=0.061 Sum_probs=100.1
Q ss_pred HhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHH----HHHhHHCCCCCCHHHHHHHHHHHhc
Q 012504 139 GNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKV----FHRMKLANESPNSVTLVSLVSACTS 214 (462)
Q Consensus 139 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~ 214 (462)
|.++..=|.+.+++++|++++..- ...+.+.|+...+-++ ++-+.+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 345566688889999988876432 2234556666554444 3555667788888888888877765
Q ss_pred ccchH-hHHHHHHHHH----HhC--CCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHH
Q 012504 215 LINVR-AGESIHSYAV----VNG--LELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYA 287 (462)
Q Consensus 215 ~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (462)
...-+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|...|-.-.++.+..+..++--+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 54321 1122333333 333 2346677788999999999999999988533333345665555444444332221
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 288 ISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 288 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
+...-..++ -|...++...|..+++...+
T Consensus 187 --------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 --------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 222223333 34556788888887766654
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.60 E-value=2.2 Score=31.13 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 283 RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
|.-+..+-++.+....+.|++......+++|.+.+++..|.++++-++.+. .+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 344566677777777889999999999999999999999999999998753 3445567766643
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.31 E-value=3.4 Score=28.46 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=36.8
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 184 SDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 184 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
=++.+-++.+....+.|++......+.+|.+.+++..|.++++-+...- .....+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 3455555666666667777777777777777777777777776665542 22234455444
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.20 E-value=5.5 Score=27.30 Aligned_cols=87 Identities=9% Similarity=0.015 Sum_probs=60.5
Q ss_pred cCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhH
Q 012504 115 LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMK 194 (462)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 194 (462)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+..||...|.+|.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345677777777666553 22222233445678899999999999999999999888765 57788888888887887
Q ss_pred HCCCCCCHHHHH
Q 012504 195 LANESPNSVTLV 206 (462)
Q Consensus 195 ~~~~~p~~~~~~ 206 (462)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45444443
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.97 E-value=3.6 Score=37.04 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH----hcCCCCchhH
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR----VYNIKPTMEH 341 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 341 (462)
..++..+...|+++++...+..+.... +.+...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566666777777777777666542 33566777777777777777777777766543 2366666544
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.81 E-value=5.8 Score=27.18 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=60.6
Q ss_pred cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 216 INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMI 295 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 295 (462)
...++|..|-+.+...+. ...+-..-+..+...|+|++|..+.+.+.-||+..|.++.. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777777653 33333333556778899999999999888889988877654 46788888888887777
Q ss_pred HCCCCCCHHHHH
Q 012504 296 QTGLKPDSISFS 307 (462)
Q Consensus 296 ~~~~~p~~~~~~ 307 (462)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 44444443
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.79 E-value=5.8 Score=27.21 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=58.8
Q ss_pred cCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhH
Q 012504 115 LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMK 194 (462)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 194 (462)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+..||...|.+|.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345677777776666553 22222233445678899999999999999999998888765 46677777777777777
Q ss_pred HCCCCCCHHHHH
Q 012504 195 LANESPNSVTLV 206 (462)
Q Consensus 195 ~~~~~p~~~~~~ 206 (462)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 34444443
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.19 E-value=6.3 Score=27.04 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=59.3
Q ss_pred cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 216 INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMI 295 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 295 (462)
...++|..|-+.+...+. ...+-..-+..+...|+|++|..+.+.+.-||+..|.++.. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777777653 33333333556778899999999999888889888877654 46677777777777776
Q ss_pred HCCCCCCHHHHH
Q 012504 296 QTGLKPDSISFS 307 (462)
Q Consensus 296 ~~~~~p~~~~~~ 307 (462)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 34444443
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.29 E-value=20 Score=31.18 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHh
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLF----AKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
.+|.++..=|.+.+++++|++++.. -...+.+.|+...+.++. +-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3555666667888888888887653 233445556665554443 4444556777777766666665
Q ss_pred hccCc--HHHHHHHHHHHH---HhcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 012504 314 SHLGL--VDEGKNYFDEMA---RVYN--IKPTMEHYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 314 ~~~~~--~~~a~~~~~~~~---~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
..... ++. ..+.+++. ..+| ..-++.....+...|.+.+++.+|...|-
T Consensus 105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 44332 111 11111111 1113 22346667778888888888888887773
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.52 E-value=19 Score=30.18 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=74.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHh
Q 012504 276 SGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTM----EHYGCMVDMLGR 351 (462)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 351 (462)
....+.|++++++.....-++.. +-|...-..+++.+|-.|++++|.+-++...+. .|+. ..|..+|++=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH--
Confidence 34567788888888888777763 336667777888888889999988888887653 4442 3344444331
Q ss_pred cCCHHHHH-HHHHhCCC----CCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 352 AGLIEEAY-HIIRNMPT----EPNAVILRSFLGAC--RNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 352 ~~~~~~A~-~~~~~~~~----~~~~~~~~~l~~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
... ++|.--.. .....-...++.+. ...|+. +.|..+-..+.+.-|..+.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~-~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY-EQVSELALQIEELRQEKGF 135 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCCCCE
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHhcCcccCC
Confidence 111 22322111 11222334445544 356888 8888888888887776653
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.93 E-value=2 Score=35.93 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=35.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 348 MLGRAGLIEEAYHIIRNM-PTEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
...+.|++++|++.+..- +.+| |...-..|+..++-.|++ +.|..-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w-~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF-ERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCchh
Confidence 345666777776655443 3333 444555566667777777 77777777777776654
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.83 E-value=13 Score=27.21 Aligned_cols=65 Identities=8% Similarity=-0.125 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHhhccC---cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 300 KPDSISFSAILSACSHLG---LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.|+..+--.+..++.++. +..+++.+++.+.+. +..-....+-.|.-++.+.|++++|.+..+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444333333443333 334556666665553 21112344444555666666666666666554
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.66 E-value=15 Score=27.24 Aligned_cols=68 Identities=7% Similarity=-0.077 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 369 PNAVILRSFLGACRNHGQVL--YLDDNLGKLLLKLEPEL-GANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~--~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
|+..+-..+..++.++.+.. ..++.+++.+.+..|.. -.....|+-++.+.|++++|.++.+.+.+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44444444444444444331 24444555555544432 2344445555555555555555555554433
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.38 E-value=8.5 Score=28.17 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=39.3
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 185 DALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 185 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
+..+-++.+...++.|++......+.+|.+.+|+..|..+++-++..- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455556666666777788877778888888888888877777766543 23344555554
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.96 E-value=8.5 Score=35.17 Aligned_cols=97 Identities=11% Similarity=0.022 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHH--
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMREK------NLQSWTIMISGLADNGRGNYAISLFAKMIQT---GLKPDSISF-- 306 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~-- 306 (462)
.+...+...|.+.|+++.|.+.|.++... -+..+-..++.+...+++..+...+.+.... +..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677899999999999999999988742 2356777888999999999999999887643 333333221
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHhcC
Q 012504 307 SAILSACSHLGLVDEGKNYFDEMARVYN 334 (462)
Q Consensus 307 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 334 (462)
..-...+...+++..|-..|-+....+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1122234567889999999998887643
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.06 E-value=22 Score=28.22 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHh--cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 389 YLDDNLGKLLLK--LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 389 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
.....+|..+.+ ++..-+..|...+..+...|++.+|.++|+.-++.+-+|
T Consensus 96 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 96 HESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555553 233334445555555555666666666665555444433
No 268
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.54 E-value=49 Score=30.29 Aligned_cols=194 Identities=8% Similarity=0.005 Sum_probs=112.0
Q ss_pred CChhHHHHHHhcCC-----CC----ChhhHHHHHHHHHcCCChhHHHHHHHHhHHC-CCCCCHHHHHHHHHHHh----cc
Q 012504 150 KEIDVAKAVFEEMP-----VR----DVVSWSSMIAGFVACDSPSDALKVFHRMKLA-NESPNSVTLVSLVSACT----SL 215 (462)
Q Consensus 150 ~~~~~A~~~~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~----~~ 215 (462)
|+++.|++.+-.+. .. .......++..|...|+++...+.+..+.+. |..+.. ...++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 67888887775543 11 3445777888899999999988877766543 322222 223333322 22
Q ss_pred cchHhHHHHHHHHHHh------C-CCc---hHhHHHHHHHHHHhcCChHHHHHHHhhccC----C-C----hhhHHHHHH
Q 012504 216 INVRAGESIHSYAVVN------G-LEL---DVALGTALVEMYSKCGHVEKAFKVFNLMRE----K-N----LQSWTIMIS 276 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~------~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~----~~~~~~l~~ 276 (462)
...+.- ........ | +-. .......|...|...|++.+|.+++..+.. . + +..+..-++
T Consensus 108 ~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222211 11111111 1 111 233456788999999999999999988762 1 1 346777788
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 277 GLADNGRGNYAISLFAKMIQT----GLKPDS--ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~----~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
.|...+++..|..++++.... ...|+. ..+...+..+...+++.+|.+ .|..+...+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~----------------~y~e~~~~~~ 249 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ----------------YLQEIYQTDA 249 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH----------------HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH----------------HHHHHHhccc
Confidence 899999999999999887532 222221 133344444455555555433 2444555666
Q ss_pred hcCCHHHHHHHHH
Q 012504 351 RAGLIEEAYHIIR 363 (462)
Q Consensus 351 ~~~~~~~A~~~~~ 363 (462)
..++.......+.
T Consensus 250 ~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 250 IKSDEAKWKPVLS 262 (445)
T ss_dssp HHSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 6666555444433
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.06 E-value=28 Score=31.72 Aligned_cols=94 Identities=5% Similarity=-0.063 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHhC--CCchHhHHHHHHHHHHhcCChHHHHHHHhhccC-----CChhhHHH---
Q 012504 204 TLVSLVSACTSLINVRAGESIHSYAVVNG--LELDVALGTALVEMYSKCGHVEKAFKVFNLMRE-----KNLQSWTI--- 273 (462)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~--- 273 (462)
+...+...+.+.|+++.|.+.+.++.... ...-...+..++..+...+++..+...+.+... ++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56778899999999999999999998753 334466788889999999999999999888752 23322221
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHHC
Q 012504 274 -MISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 274 -l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
-+..+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 122345678999999988877654
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=72.48 E-value=34 Score=27.09 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=20.2
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCC
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGR 283 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (462)
+..+-...+.+..+.++.+....+...+..++...-...+.++...+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 333444444444444443333333333334444444444444444444
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.16 E-value=32 Score=26.26 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=24.7
Q ss_pred HHHHHHHHh--cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 392 DNLGKLLLK--LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 392 ~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
..+|..+.+ ++..-+..|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555443 233334445555555555666666666665555544443
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.86 E-value=35 Score=25.70 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=35.7
Q ss_pred HHHHHHHHHh--cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 391 DDNLGKLLLK--LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 391 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
...+|..+.+ ++...+..|...+..+...|++.+|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5777777765 345555667778888888888888888888777776655
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.16 E-value=58 Score=28.03 Aligned_cols=115 Identities=13% Similarity=0.060 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHh
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISL----FAKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
..|.++..=|.+.+++++|++++.. -...+.+.|+...|.++ ++...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455566667777888888877654 23445556666655554 44444557777777777777665
Q ss_pred hccC-----cHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 012504 314 SHLG-----LVDEGKNYFDEMARVYN-IKPTMEHYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 314 ~~~~-----~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
.... +.+-..+..+.-.+..+ ..-++.....+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4421 11111112222212101 12356777788888888888888888664
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.02 E-value=50 Score=26.09 Aligned_cols=145 Identities=9% Similarity=0.014 Sum_probs=63.4
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHH
Q 012504 143 LRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGE 222 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 222 (462)
+..+.+.|+.+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++...++.+..
T Consensus 40 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~- 114 (211)
T 3ltm_A 40 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERAV- 114 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-
T ss_pred HHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH-
Confidence 333333343333333333334444444444444444444332 2222222222 24444444444555544443322
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 223 SIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
..+..+.. .++..+-...+.++...|..+....+...+..++..+-...+.++.+.+. .++...+.++..
T Consensus 115 ~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 115 EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 22222221 34555555556666666654433334444445555555555666666554 344444444443
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.84 E-value=5.4 Score=35.18 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCh---hhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 012504 240 GTALVEMYSKCGHVEKAFKVFNLMREKNL---QSWTIMISGLADNGR--GNYAISLFAKMIQTGLKPDS 303 (462)
Q Consensus 240 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 303 (462)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+...+++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 45677888888999999999999887642 233444444444332 34567777777777655433
No 276
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.68 E-value=1e+02 Score=28.68 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=46.1
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh-h------h-HHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMREKNL-Q------S-WTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~------~-~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
-...+|.+++.|...+.++.|..+..+..-|.. . . +--+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356778888999999999999999998865422 1 1 222356677788999999988887765
No 277
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.83 E-value=63 Score=25.91 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=40.5
Q ss_pred HHHHHhCCCchhHHHHHHHHHHCCCCCCcch--HHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccch--HhHHHHHHHh
Q 012504 73 IRAYAKTSCSIESIKLFDEMLKTGLRPDNFT--YPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYI--GNTLLRMYAA 148 (462)
Q Consensus 73 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 148 (462)
+...+..|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3444556777666666666655554443221 112233334445443 3344445554443321 1223344445
Q ss_pred cCChhHHHHHHhcC
Q 012504 149 CKEIDVAKAVFEEM 162 (462)
Q Consensus 149 ~~~~~~A~~~~~~~ 162 (462)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 56666555555544
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.54 E-value=45 Score=27.31 Aligned_cols=23 Identities=4% Similarity=-0.133 Sum_probs=18.5
Q ss_pred HHHHHHhCCCchhHHHHHHHHHH
Q 012504 72 LIRAYAKTSCSIESIKLFDEMLK 94 (462)
Q Consensus 72 li~~~~~~g~~~~a~~~~~~m~~ 94 (462)
-++.+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46778888999999998887754
No 279
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.24 E-value=93 Score=26.06 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=6.0
Q ss_pred cCCHHHHHHHhcc
Q 012504 47 SISLHFTRSLFNN 59 (462)
Q Consensus 47 ~~~~~~A~~~~~~ 59 (462)
.|+.+-+..+++.
T Consensus 41 ~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 41 DNNVRLVCTLLNA 53 (285)
T ss_dssp TTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHhC
Confidence 4455544444443
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=54.50 E-value=66 Score=24.16 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=40.9
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCC---hhhHHHHHHHHHcCCC--hhHHHHHHHHhHHCCCCCCH
Q 012504 140 NTLLRMYAACKEIDVAKAVFEEMPVRD---VVSWSSMIAGFVACDS--PSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 140 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 202 (462)
..++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 567778888899999999999887662 2234444445554322 35567777777776654433
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.50 E-value=1.2e+02 Score=27.04 Aligned_cols=284 Identities=10% Similarity=0.034 Sum_probs=146.6
Q ss_pred chHhHHHHHHHhcCChhHHHHHHhcCCCC--------ChhhHHHHHHHHHcC-CChhHHHHHHHHhHHCCCCCCHHHH--
Q 012504 137 YIGNTLLRMYAACKEIDVAKAVFEEMPVR--------DVVSWSSMIAGFVAC-DSPSDALKVFHRMKLANESPNSVTL-- 205 (462)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~-- 205 (462)
.....|...|.+.|+.++..+++.....- .......++..+... +..+.-.++..+..+.. .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34567888899999999999888887631 233456667766654 33344444444433221 0111233
Q ss_pred ----HHHHHHHhcccchHhHHHHHHHHHHhCCC-----chHhHHHHHHHHHHhcCChHHHHHHHhhccC------CChhh
Q 012504 206 ----VSLVSACTSLINVRAGESIHSYAVVNGLE-----LDVALGTALVEMYSKCGHVEKAFKVFNLMRE------KNLQS 270 (462)
Q Consensus 206 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~ 270 (462)
..++..|...|++.+|..++..+.+.--. .-..++..-+..|...+++.++...+..... +++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 14667777888888888777777664111 1133555566777788888887777766542 22222
Q ss_pred HH----HHHHHHH-HcCChHHHHHHHHHHHHC-C-C-CCC---HHHHHHHHHHhhccCcHHHHHHHHH-HHHHhcCCCCc
Q 012504 271 WT----IMISGLA-DNGRGNYAISLFAKMIQT-G-L-KPD---SISFSAILSACSHLGLVDEGKNYFD-EMARVYNIKPT 338 (462)
Q Consensus 271 ~~----~l~~~~~-~~~~~~~a~~~~~~m~~~-~-~-~p~---~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~ 338 (462)
.. .-...+. ..+++..|...|-+..+. . . .|. ...|..+.. ... ++..+...++. .....+ ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~-~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IML-GQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHT-TCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHc-CCHHHHHHHhcccccccc-CCcc
Confidence 11 1223345 677888887777665432 1 0 111 112222222 111 22222222221 211211 2455
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-h-cCCCCCchHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLL-K-LEPELGANYVLAAS 414 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~-~~p~~~~~~~~l~~ 414 (462)
...+..++.+| ..+++.+...+++.... ..|+..... +..+ -..+.++.. + ..|-....+..++.
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h-~~~L---------~~~Ir~~~L~~i~~pYsrIsl~~iA~ 324 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAH-LGTL---------YDTMLEQNLCRIIEPYSRVQVAHVAE 324 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHH-HHHH---------HHHHHHHHHHHHHTTCSEEEHHHHHH
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHH-HHHH---------HHHHHHHHHHHHhHhhceeeHHHHHH
Confidence 55556666655 44567666666666532 123321110 1000 011111111 1 24544455666666
Q ss_pred HHhhcCCHHHHHHHHHHHhcCCC
Q 012504 415 VSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.+.- ..+++...+-+|+..|.
T Consensus 325 ~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 325 SIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHCc--CHHHHHHHHHHHHHCCC
Confidence 6543 67899999999987654
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.30 E-value=94 Score=25.57 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=8.8
Q ss_pred cchHhHHHHHHHHHHhCCCc
Q 012504 216 INVRAGESIHSYAVVNGLEL 235 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~~~~~ 235 (462)
++......+.+.+.+.|..+
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCS
T ss_pred cccchHHHHHHHHHHcCCCC
Confidence 33333344444555554433
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.84 E-value=52 Score=26.59 Aligned_cols=29 Identities=7% Similarity=0.106 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
...|......+...|++ ..|..+|+..++
T Consensus 150 AlfYe~wA~~lE~~g~~-~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 150 SIFYEEYANYFESRGLF-QKADEVYQKGKR 178 (223)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Confidence 34444444444445555 555555555444
No 284
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.81 E-value=79 Score=24.58 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=12.0
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 265 EKNLQSWTIMISGLADNGRGNYAISLFAKMI 295 (462)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 295 (462)
.++..+-...+.++...|. .++...+..+.
T Consensus 149 d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 149 DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3344333344444444443 23333344433
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.70 E-value=85 Score=24.89 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=39.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc
Q 012504 281 NGRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT 338 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 338 (462)
.+...++.++|..|...|+--. +.-|......+...|++.+|..+|+.-.+. +-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3446677888888887765444 345666666777778888888888877765 55553
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.09 E-value=98 Score=25.44 Aligned_cols=176 Identities=15% Similarity=0.077 Sum_probs=91.3
Q ss_pred hcChhHHHHHHHHHHHhCCCCchh----hhhhHhhhhhcCCHHHHHHHhccCCC--CCCcccHHHHHHHHHhCCCchhHH
Q 012504 13 SKTVHHLHQLHTLFLKTSLDHNTC----IISRFILTSLSISLHFTRSLFNNLPV--TPPLFAYNTLIRAYAKTSCSIESI 86 (462)
Q Consensus 13 ~~~~~~a~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~~~~~A~~~~~~~~~--~~~~~~y~~li~~~~~~g~~~~a~ 86 (462)
.|+++ +.+.+++.|..++.. -.+.|..+...|+.+-+.-+++.-.. .++...++.+ ...+..|+.
T Consensus 15 ~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~---- 85 (285)
T 1wdy_A 15 NEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF-LLAAIAGSV---- 85 (285)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHTCH----
T ss_pred cCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCCH----
Confidence 35654 445556667655433 22333344556788777777765322 1223223333 333445554
Q ss_pred HHHHHHHHCCCCCCcchH--HHHHHHhhhhcCchhHHHHHHHHHHhCCCCccc------------hHhHHHHHHHhcCCh
Q 012504 87 KLFDEMLKTGLRPDNFTY--PFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKY------------IGNTLLRMYAACKEI 152 (462)
Q Consensus 87 ~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~ 152 (462)
++++.+.+.|..++.... .+.+...+..|+.+ +++.+.+.|..++.. .-...+...+..|+.
T Consensus 86 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 161 (285)
T 1wdy_A 86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161 (285)
T ss_dssp HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence 455666667766543221 12333344556543 455556666555432 112445566678888
Q ss_pred hHHHHHHhcCC-C---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 153 DVAKAVFEEMP-V---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 153 ~~A~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
+-+..+++... . .+..-.+.+.. ....++.....++++.+.+.|..++.
T Consensus 162 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~ 214 (285)
T 1wdy_A 162 EVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNV 214 (285)
T ss_dssp HHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCC
Confidence 88888887632 1 22222233332 33456666666777777777766543
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.07 E-value=70 Score=26.19 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=17.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 337 PTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 337 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
++.......+..+.+.|+.++|.++|-+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34444555556666777777777666443
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.79 E-value=80 Score=23.73 Aligned_cols=50 Identities=8% Similarity=0.005 Sum_probs=21.0
Q ss_pred HHHHHHHhHHCCCCCCH-HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCc
Q 012504 186 ALKVFHRMKLANESPNS-VTLVSLVSACTSLINVRAGESIHSYAVVNGLEL 235 (462)
Q Consensus 186 a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (462)
+.++|..|..+|+--.. .-|......+...|++.+|..+++.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44445444444433221 223333333444444444444444444444333
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.36 E-value=58 Score=30.35 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCch--hHH-HHHHHHHHhcCCHHHHHHHHHhC
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTM--EHY-GCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
...++.+++.|...+.++.|..+..+..--....++. ..| ..+.+.+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3467777788888888888888887763100001111 112 23455566677888887777664
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.22 E-value=49 Score=27.13 Aligned_cols=91 Identities=13% Similarity=-0.009 Sum_probs=53.7
Q ss_pred HHHHHhCCCchhHHHHHHHHHHCCCCCCcch-------HHHHHHHhh--hhcCchhHHHHHHHHHHhC---------CCC
Q 012504 73 IRAYAKTSCSIESIKLFDEMLKTGLRPDNFT-------YPFVVKACG--RCLLIGIGGSVHSLIFKVG---------LDS 134 (462)
Q Consensus 73 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~ 134 (462)
+...++.|+.+....+++.+.+.|..++... .+.+..+.. +.|+.+-+..+++.-...+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 4455678889888888888877776665333 233443332 5688877777776654321 111
Q ss_pred ccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 135 DKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
....-.+.+...+..|+.+-+.-+++.-.
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 00012234455567788887777777544
No 291
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=48.68 E-value=1.3e+02 Score=25.90 Aligned_cols=126 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc-----
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA----- 352 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 352 (462)
+...|++++|+..|+... +...+.......+.+++.++.....+- ....-++.-.+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrEY--------ilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETAREY--------ILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCccc
Q ss_pred -CCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 353 -GLIEEAYHIIRNMPTEPN--AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 353 -~~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
.+--+-..+|....-+|. ..+.+.-+....+.+++ ..|..+.++++++.|... ..++|.+++
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy-~tAa~fArrLLel~p~~~--------------~a~qArkil 250 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNF-LQASYFAGEFLKIISSGP--------------RAEQARKIK 250 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCSSH--------------HHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhcCCCHH--------------HHHHHHHHH
Q ss_pred HHHhcCC
Q 012504 430 VAINQKG 436 (462)
Q Consensus 430 ~~~~~~~ 436 (462)
....+.+
T Consensus 251 ~~ce~~~ 257 (325)
T 3mv2_A 251 NKADSMA 257 (325)
T ss_dssp HHHHTSC
T ss_pred HHHhcCC
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.59 E-value=75 Score=23.03 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=41.5
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCC---hhhHHHHHHHHHcCCC--hhHHHHHHHHhHHCCCCCCH
Q 012504 140 NTLLRMYAACKEIDVAKAVFEEMPVRD---VVSWSSMIAGFVACDS--PSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 140 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 202 (462)
..++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 567778888899999999999987662 2234444445555432 35677777777776654433
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.65 E-value=1e+02 Score=24.43 Aligned_cols=19 Identities=5% Similarity=-0.095 Sum_probs=9.5
Q ss_pred HHHHhcCChHHHHHHHhhc
Q 012504 245 EMYSKCGHVEKAFKVFNLM 263 (462)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~ 263 (462)
....+.|+.+-+..+++..
T Consensus 215 ~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHcCcHHHHHHHHHhh
Confidence 3345556655555554443
No 294
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.21 E-value=65 Score=24.06 Aligned_cols=63 Identities=6% Similarity=0.008 Sum_probs=41.0
Q ss_pred HHHHHCCCCCCcchHHHHHHHhhhhc-CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 90 DEMLKTGLRPDNFTYPFVVKACGRCL-LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 90 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..|.-.-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 346667777655443 4555555555 67788888888888776666666555566666666543
No 295
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=46.38 E-value=1.3e+02 Score=25.01 Aligned_cols=244 Identities=8% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHH--HhCC
Q 012504 55 SLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIF--KVGL 132 (462)
Q Consensus 55 ~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~ 132 (462)
.+++.+.. ++...-...+.++...| ...+...+..+.. .++...-...+.++.+.+....+..-+-... ..--
T Consensus 27 ~L~~~L~~-~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 27 ELFRLLDD-HNSLKRISSARVLQLRG-GQDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN 101 (280)
T ss_dssp HHHHHTTC-SSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHccC-CchHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Q ss_pred CCccchHhHHHHHHHhcC------ChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHH
Q 012504 133 DSDKYIGNTLLRMYAACK------EIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLV 206 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 206 (462)
.++..+-...+.++...+ ...-...+...+..++...-...+.++...++ ..+...+..+.. .++...-.
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~ 177 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRN 177 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHH
Q ss_pred HHHHHHhccc-chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChH
Q 012504 207 SLVSACTSLI-NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGN 285 (462)
Q Consensus 207 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (462)
..+.+....+ +...+...+..+.. .++..+-...+.++.+.|+......+...+..++ .-...+.++.+.|. .
T Consensus 178 ~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~ 251 (280)
T 1oyz_A 178 WAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-K 251 (280)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-G
T ss_pred HHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-h
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 012504 286 YAISLFAKMIQTGLKPDSISFSAILSACSH 315 (462)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 315 (462)
++...+.++... .++.......+....+
T Consensus 252 ~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 252 TLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp GGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred hhhHHHHHHHhc--CCCcHHHHHHHHHhhc
No 296
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=46.21 E-value=1.6e+02 Score=26.28 Aligned_cols=234 Identities=9% Similarity=0.002 Sum_probs=128.8
Q ss_pred chHHHHHHHhhhhcCchhHHHHHHHHHHhC-CCC---ccchHhHHHHHHHhcC-ChhHHHHHHhcCCC---CChhhH---
Q 012504 102 FTYPFVVKACGRCLLIGIGGSVHSLIFKVG-LDS---DKYIGNTLLRMYAACK-EIDVAKAVFEEMPV---RDVVSW--- 170 (462)
Q Consensus 102 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~--- 170 (462)
.....+...|.+.|+.++..+++......- .-+ .......+++.+.... ..+.-.++..+..+ .+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888888888877654321 111 1234566777776543 33333344333331 111222
Q ss_pred ---HHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH-----HHHHHHHHHHhcccchHhHHHHHHHHHHh--CCCchHhHH
Q 012504 171 ---SSMIAGFVACDSPSDALKVFHRMKLANESPNS-----VTLVSLVSACTSLINVRAGESIHSYAVVN--GLELDVALG 240 (462)
Q Consensus 171 ---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 240 (462)
.-++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...+++.++...+...... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25788899999999999999888664112222 23445566788889999999988877643 222333222
Q ss_pred ----HHHHHHHH-hcCChHHHHHHHhhcc----CCChh------hHHHHHHHHHHcCChHHHHHHHH-HHHHCCCCCCHH
Q 012504 241 ----TALVEMYS-KCGHVEKAFKVFNLMR----EKNLQ------SWTIMISGLADNGRGNYAISLFA-KMIQTGLKPDSI 304 (462)
Q Consensus 241 ----~~l~~~~~-~~~~~~~a~~~~~~~~----~~~~~------~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~ 304 (462)
..-+-.+. ..++|..|...|-+.. +.+.. .|. ++.+... ++..+...++. +....-..|+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYl-vL~aLl~-~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYM-LLCKIML-GQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHT-TCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHc-CCHHHHHHHhccccccccCCccHH
Confidence 22234466 7889999888776543 22221 121 2222222 33333333222 111111245555
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchh
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTME 340 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 340 (462)
.+..++.++. .+++.....++..... .+..|+.
T Consensus 258 ~l~~L~~a~~-~~dl~~f~~iL~~~~~--~l~~D~~ 290 (394)
T 3txn_A 258 AMKSVAEASH-KRSLADFQAALKEYKK--ELAEDVI 290 (394)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHSTT--TTTTSHH
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHH--HHhcChH
Confidence 6666776654 4677777777766543 3444543
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.81 E-value=88 Score=23.48 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCh---hhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCC
Q 012504 240 GTALVEMYSKCGHVEKAFKVFNLMREKNL---QSWTIMISGLADNGR--GNYAISLFAKMIQTGLK 300 (462)
Q Consensus 240 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~ 300 (462)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34566777777888888888887765532 223333334433222 34466666666665544
No 298
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.85 E-value=63 Score=20.85 Aligned_cols=61 Identities=8% Similarity=-0.002 Sum_probs=36.2
Q ss_pred HHHHCCCCCCcchHHHHHHHhhhhc-CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 91 EMLKTGLRPDNFTYPFVVKACGRCL-LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 91 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
.+.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3556676655443 34555555554 5666777777777666555555555566666655543
No 299
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.83 E-value=61 Score=23.67 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=33.3
Q ss_pred HHHCCCCCCcchHHHHHHHhhhhc-CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 92 MLKTGLRPDNFTYPFVVKACGRCL-LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 92 m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..|.-.-++.+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4556666554333 3445554444 5667777777777766555555544445555555543
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.37 E-value=91 Score=22.55 Aligned_cols=62 Identities=11% Similarity=0.196 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCh---hhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC
Q 012504 240 GTALVEMYSKCGHVEKAFKVFNLMREKNL---QSWTIMISGLADNGR--GNYAISLFAKMIQTGLKP 301 (462)
Q Consensus 240 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p 301 (462)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34566777777888888888887765532 223333334433322 345666666666665443
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.28 E-value=1.1e+02 Score=23.51 Aligned_cols=50 Identities=4% Similarity=0.021 Sum_probs=24.0
Q ss_pred hcCCHHHHHHHhccCCCC---CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC
Q 012504 46 LSISLHFTRSLFNNLPVT---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD 100 (462)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 100 (462)
..|+.+....+++.-+.. ++..-++.| ...+..|+. ++++.+.+.|..|+
T Consensus 14 ~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~----~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 14 NQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDI----EIAKALIDRGADIN 66 (201)
T ss_dssp HTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCTT
T ss_pred HhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCH----HHHHHHHHcCCCCC
Confidence 355777777777655422 222223333 333344543 34444555555544
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.20 E-value=76 Score=23.47 Aligned_cols=60 Identities=8% Similarity=-0.016 Sum_probs=29.8
Q ss_pred HHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 92 MLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 92 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+..|.-.-++.+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4455555443322 33444444445555666666665555444444444445555555543
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.60 E-value=1.3e+02 Score=23.82 Aligned_cols=14 Identities=7% Similarity=-0.223 Sum_probs=6.4
Q ss_pred HHcCChHHHHHHHH
Q 012504 279 ADNGRGNYAISLFA 292 (462)
Q Consensus 279 ~~~~~~~~a~~~~~ 292 (462)
.+.|+.+-+.-+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 44555544444433
No 304
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.30 E-value=1e+02 Score=26.91 Aligned_cols=15 Identities=7% Similarity=0.020 Sum_probs=7.6
Q ss_pred HhcCChHHHHHHHhh
Q 012504 248 SKCGHVEKAFKVFNL 262 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~ 262 (462)
+..|+.+-+.-+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 344555555555544
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.21 E-value=1.2e+02 Score=23.33 Aligned_cols=153 Identities=8% Similarity=0.009 Sum_probs=68.9
Q ss_pred HHHhCCCchhHHHHHHHHHHCCCCC---CcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccch--HhHHHHHHHhc
Q 012504 75 AYAKTSCSIESIKLFDEMLKTGLRP---DNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYI--GNTLLRMYAAC 149 (462)
Q Consensus 75 ~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 149 (462)
..+..|+.+....++..- +..+ |..-.+ .+...+..|+.+ +++.+++.|..++... -.+.+...+..
T Consensus 11 ~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDT---TYQVDEVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp HHHHTTCHHHHHHHHTCT---TCCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHcC---CCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 345577777666665432 1122 222222 334445556644 4455556676555432 12344555677
Q ss_pred CChhHHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHH
Q 012504 150 KEIDVAKAVFEEMP----VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIH 225 (462)
Q Consensus 150 ~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 225 (462)
|+.+-+..+++... ..+..-.+.+ ...+..|+.+-+..+++.-...--..|....+.+..++........-.++.
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 88888877775433 1122111222 223345665544444333200000122222333333333222223334566
Q ss_pred HHHHHhCCCch
Q 012504 226 SYAVVNGLELD 236 (462)
Q Consensus 226 ~~~~~~~~~~~ 236 (462)
+.+.+.|..++
T Consensus 162 ~~Ll~~ga~~~ 172 (201)
T 3hra_A 162 KLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHCCCCCC
Confidence 66666665544
No 306
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.14 E-value=48 Score=22.60 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=30.0
Q ss_pred CChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHH
Q 012504 251 GHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 251 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (462)
...++|.++++.+..+++.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888999888888888999888887767655443
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.64 E-value=1.5e+02 Score=30.33 Aligned_cols=51 Identities=2% Similarity=-0.132 Sum_probs=30.3
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
++..|...|..+-+.++. . -.+.++..--.+.++|...|++++|.+.|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~----~--~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G--WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G--GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHH----h--hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666665544422 2 22333333345667788888888888888876
No 308
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.32 E-value=1.3e+02 Score=23.34 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=57.5
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
++..+-...+.++.+.++.+....+...+..++...-...+.++...++. ++...+..+.. .++...-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444455555555544444444444455655555556666666653 34444444443 346556666666666
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
..|.. .+...+..+... ++..+-...+.++.+.+
T Consensus 164 ~~~~~-~~~~~L~~~l~d----~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 164 EIGGE-RVRAAMEKLAET----GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHCSH-HHHHHHHHHHHH----CCHHHHHHHHHHHHHCC
T ss_pred HhCch-hHHHHHHHHHhC----CCHHHHHHHHHHHHHHH
Confidence 66653 455555555553 45555555555555443
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.72 E-value=98 Score=22.86 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=13.5
Q ss_pred hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 012504 218 VRAGESIHSYAVVNGLELDVALGTALVEMYSKCG 251 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (462)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344444444444433333333333334444433
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.21 E-value=1.3e+02 Score=22.99 Aligned_cols=54 Identities=6% Similarity=-0.017 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHCCCCCCc-chHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCcc
Q 012504 83 IESIKLFDEMLKTGLRPDN-FTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDK 136 (462)
Q Consensus 83 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (462)
+.+.++|..|..+|+.-.. ..|......+-..|++.+|.++|..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4466777777777655433 33555555566677777777777777776655543
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.70 E-value=1.9e+02 Score=24.81 Aligned_cols=195 Identities=6% Similarity=0.066 Sum_probs=92.8
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCC--hhhHHHHHHHHHcCCC--hhHHHHHHHHhHHCCCCCCHH---HHHHHHHHH
Q 012504 140 NTLLRMYAACKEIDVAKAVFEEMPVRD--VVSWSSMIAGFVACDS--PSDALKVFHRMKLANESPNSV---TLVSLVSAC 212 (462)
Q Consensus 140 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~ 212 (462)
..++.-|...|+.++|...++++..|. ......++......++ -+.+-.++..+.. ++-+... .|..++..+
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Confidence 568888999999999999999998764 2223333443333332 2345556666654 3333332 233444433
Q ss_pred hccc-chHhHHHHHHHHH----HhCCCchHhHHHHHHHHHHhcC--ChHHHHHHHhh------cc----CCC----h---
Q 012504 213 TSLI-NVRAGESIHSYAV----VNGLELDVALGTALVEMYSKCG--HVEKAFKVFNL------MR----EKN----L--- 268 (462)
Q Consensus 213 ~~~~-~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~------~~----~~~----~--- 268 (462)
.... |...|..++..+. ..++-|-..........-...| -...|..++.. .. .++ .
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Confidence 3222 3333444333333 3332221111100000000000 01122222210 00 011 1
Q ss_pred -hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC--cHHHHHHHHHHHHHhcCCCC
Q 012504 269 -QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG--LVDEGKNYFDEMARVYNIKP 337 (462)
Q Consensus 269 -~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 337 (462)
.....++.-|...|+.++|.+.++++...... .......+..+.-+.+ ..+....++..+.+. ++-+
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls 235 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STIT 235 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCC
Confidence 13556778888889999998888887521111 1223344444555432 245566777777665 4433
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.52 E-value=61 Score=24.04 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=32.6
Q ss_pred HHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 91 EMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 91 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3445566654433 23444444445 566777777776666555555444445555555543
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.11 E-value=76 Score=23.67 Aligned_cols=62 Identities=15% Similarity=-0.016 Sum_probs=35.6
Q ss_pred HHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 90 DEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 90 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+.++..+..|.-.-++.+...|-+
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34555666644333 244555555556677777777777766655655555556666666654
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.25 E-value=1.3e+02 Score=22.43 Aligned_cols=63 Identities=2% Similarity=-0.076 Sum_probs=29.6
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhc
Q 012504 52 FTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCL 115 (462)
Q Consensus 52 ~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 115 (462)
.+.+.+.+.+. ..+..=..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 13 ~~~~~l~~~g~-r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 13 RLRMSIKKNGL-KNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444333 2333334455555555556666666666665554444444433444444333
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.39 E-value=1.7e+02 Score=23.64 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHCCCCCCc-chHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCc
Q 012504 83 IESIKLFDEMLKTGLRPDN-FTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSD 135 (462)
Q Consensus 83 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (462)
+.+.++|..|...|+.-.. ..|......+...|++.+|..+|..-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4666777777776654333 3355555556666777777777777666665553
No 316
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=36.12 E-value=1.3e+02 Score=28.05 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=36.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
....-.... +.|..+|.++..+.|++...|+.|+......|+.-+|.-.|-+
T Consensus 160 DL~RY~~~~-~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 160 DIARYRNQT-SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence 334444556 7788888888888888888888888777777777776655543
No 317
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=35.63 E-value=98 Score=20.68 Aligned_cols=62 Identities=5% Similarity=-0.072 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchh
Q 012504 19 LHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIE 84 (462)
Q Consensus 19 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~ 84 (462)
...+++.+.+.|+- +..-+..+. ......+.|+++++.++. ....+|..++.++.+.+...-
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~--~~~t~~~kar~Lld~l~~-kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVR--NEPTQQQRAAMLIKMILK-KDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHH--TSSSHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHH--cCCChHHHHHHHHHHHHH-cCHHHHHHHHHHHHHcCHHHH
Confidence 45688888888854 344445555 444588889999988877 667788888888887765433
No 318
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.10 E-value=2.3e+02 Score=24.87 Aligned_cols=61 Identities=8% Similarity=0.095 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC--cHHHHHHHHHHHHHh
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG--LVDEGKNYFDEMARV 332 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~ 332 (462)
...++.-|...++.++|.+.++++...... .......+..+.-+.+ ..+....++..+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~ 282 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS 282 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 566777788888888888888877521111 1223334444444432 244566667666654
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.96 E-value=67 Score=24.41 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=46.7
Q ss_pred hhHHHHHHH-HHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHh--CCCCccchHhHHHHHHHhcCChhH
Q 012504 83 IESIKLFDE-MLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKV--GLDSDKYIGNTLLRMYAACKEIDV 154 (462)
Q Consensus 83 ~~a~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 154 (462)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. ++..+..|.-.-++.+...|-+.+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 444544443 45567776543 345667777777788888888888887 666666665556677777775543
No 320
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.50 E-value=70 Score=23.15 Aligned_cols=44 Identities=11% Similarity=-0.017 Sum_probs=24.8
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhc
Q 012504 72 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCL 115 (462)
Q Consensus 72 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 115 (462)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 45555555556666777777666655555555444444444444
No 321
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=33.39 E-value=1.1e+02 Score=20.48 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChH
Q 012504 221 GESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGN 285 (462)
Q Consensus 221 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (462)
...++..+.+.|+- +..-+..+.. .....++|.++++.+..++..+|..++.++...+...
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 34566666666632 2222222221 3466788888888888888888888888888777543
No 322
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=33.08 E-value=1.5e+02 Score=21.90 Aligned_cols=51 Identities=12% Similarity=0.004 Sum_probs=23.8
Q ss_pred hhcCCHHHHHHHhccCCCC---CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC
Q 012504 45 SLSISLHFTRSLFNNLPVT---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD 100 (462)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 100 (462)
...|+.+....+++.-+.. .+..-+ +.+...+..|+. ++++.+.+.|..++
T Consensus 16 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~----~~v~~Ll~~g~~~~ 69 (165)
T 3twr_A 16 AKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRV----SVVEYLLQHGADVH 69 (165)
T ss_dssp HHHTCHHHHHHHCCTTTTTCCCTTTTCC-CHHHHHHHTTCH----HHHHHHHHTTCCTT
T ss_pred HHhCCHHHHHHHHHcCCCCccccccCCC-CHHHHHHHcChH----HHHHHHHhcCCCCC
Confidence 3455777777776654322 111112 233334445553 44444555555443
No 323
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.55 E-value=1.3e+02 Score=25.18 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=44.1
Q ss_pred CHHHHHHHhccCCC-CCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHH
Q 012504 49 SLHFTRSLFNNLPV-TPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLI 127 (462)
Q Consensus 49 ~~~~A~~~~~~~~~-~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (462)
+..+..+++.+-.. .+|..-++. +...+..|+.+-+ +.+.+.|..++...-.+.+...+..|+.+-+. .+
T Consensus 11 ~~~~v~~lL~~~~~~~~d~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~L 81 (285)
T 3kea_A 11 KSKQLKSFLSSKDTFKADVHGHSA-SYYAIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVK----IL 81 (285)
T ss_dssp CHHHHHHHHHSTTTTCCCTTSCCH-HHHHHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HH
T ss_pred CHHHHHHHHHhCCCCccCCCCCCH-HHHHHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HH
Confidence 44444454433221 133333333 3333445655433 33444454443332223344445556654443 33
Q ss_pred HHhCCCCccch--HhHHHHHHHhcCChhHHHHHHhc
Q 012504 128 FKVGLDSDKYI--GNTLLRMYAACKEIDVAKAVFEE 161 (462)
Q Consensus 128 ~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~ 161 (462)
++.|..++... -.+.+...+..|+.+-+.-+++.
T Consensus 82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 44454443321 11233344455666555555554
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.84 E-value=1.9e+02 Score=22.86 Aligned_cols=99 Identities=13% Similarity=0.020 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHcC---CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc-----hHhHHHHHHHHHHhCCCc
Q 012504 164 VRDVVSWSSMIAGFVAC---DSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN-----VRAGESIHSYAVVNGLEL 235 (462)
Q Consensus 164 ~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 235 (462)
.++...+--+|+++.|+ .+++.|+-.+-+|.+.| .|....-..++.+...-|. +..|...++.....|.+-
T Consensus 8 Dk~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 8 DKNGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp ----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLM 263 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 263 (462)
-.......+--++..-+...+...++..
T Consensus 87 ~~i~LaqaviyLA~aPKSNs~y~A~~~A 114 (204)
T 2r9g_A 87 ARIPLADVVVDLCLSPKSNSAYMALDAA 114 (204)
T ss_dssp THHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHH
No 325
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.77 E-value=3.6e+02 Score=26.10 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhh
Q 012504 69 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR 113 (462)
Q Consensus 69 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 113 (462)
--.+|--+.++|++++|.++.++.... ++--...|...+..++.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 456777788899999999888766432 11112456666777664
No 326
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.73 E-value=67 Score=23.61 Aligned_cols=33 Identities=15% Similarity=0.002 Sum_probs=15.7
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCCcchH
Q 012504 72 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTY 104 (462)
Q Consensus 72 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 104 (462)
++..+...++.-.|.++++.+.+.+...+..|.
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTV 51 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTV 51 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHH
Confidence 344444444455555555555554444444443
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.09 E-value=1.1e+02 Score=23.21 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=29.2
Q ss_pred hHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh--CCCchHhHHHHHHHHHHhcCC
Q 012504 193 MKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN--GLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 193 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 252 (462)
+++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344455554432 23344444445555666666666655 434444444444455555553
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.08 E-value=4.2e+02 Score=27.08 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=72.3
Q ss_pred HHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhH
Q 012504 142 LLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 142 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
++..+...|..+-|.++...+.. ++..--.+..+|...|++++|...|++.- .|+..+...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 56666777888888777766665 44433467788999999999999998753 233222111000 0000
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhcc----CCCh----hhHHHHHHHHHHcC
Q 012504 222 ESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMR----EKNL----QSWTIMISGLADNG 282 (462)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~----~~~~~l~~~~~~~~ 282 (462)
..++... + .-.....-|..++..+-+.+-++-+.++-+... ..|. ..|..+.++.+..|
T Consensus 884 ~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011000 0 001233467788888888888887776655443 2233 35667777666544
No 329
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=30.83 E-value=1.4e+02 Score=25.89 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=50.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH---hcCCHHHHHHHHHhC
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG---RAGLIEEAYHIIRNM 365 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~ 365 (462)
++++.+.+.|+.|...++..++..+.+.=.++.+.++|+.+... |...-..+..+++..+. -..++++...++..+
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e-g~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~l 292 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD-GEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRL 292 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence 35566677789998888888888888888899999999999876 52111111112222211 123567777777776
Q ss_pred CCC
Q 012504 366 PTE 368 (462)
Q Consensus 366 ~~~ 368 (462)
+..
T Consensus 293 p~~ 295 (334)
T 2qq8_A 293 PED 295 (334)
T ss_dssp CTT
T ss_pred CCc
Confidence 543
No 330
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.06 E-value=2.1e+02 Score=22.54 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHH---cCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 012504 172 SMIAGFV---ACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI 216 (462)
Q Consensus 172 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 216 (462)
-+|+++. +-.+++.|+-.+-+|.+.|-.|....-..++.+...-|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3444443 45788888999999988886666555555555554444
No 331
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.71 E-value=1.6e+02 Score=25.53 Aligned_cols=16 Identities=6% Similarity=-0.112 Sum_probs=8.4
Q ss_pred HHhcCChHHHHHHHhh
Q 012504 247 YSKCGHVEKAFKVFNL 262 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~ 262 (462)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3445666555555543
No 332
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.76 E-value=2.9e+02 Score=23.73 Aligned_cols=95 Identities=8% Similarity=0.043 Sum_probs=62.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH----HHhcCCHHHHHHHHHh
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM----LGRAGLIEEAYHIIRN 364 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~ 364 (462)
++++.+.+.|+.|...++..++..+.+.=.++.+.++|+.+... |...-..+..+++.. ..+..++++..++++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~-g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ-GTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC-CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 45666777889998888999998888877899999999999876 544222222233322 2334588888888887
Q ss_pred CCCCCCHHHHHHHHHHHHHc
Q 012504 365 MPTEPNAVILRSFLGACRNH 384 (462)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~~ 384 (462)
.....+......++.-....
T Consensus 288 ~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 288 TLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp TTTCCCHHHHHHHHHHHHHC
T ss_pred hCCCCCHHHHHHHHHHHHhC
Confidence 54344444444555433333
No 333
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.59 E-value=1.8e+02 Score=22.96 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=29.0
Q ss_pred CHHHHHHHhccCCCCCCcc--cHH-----HHHHHHHhCCCchhHHHHHHHHHHC
Q 012504 49 SLHFTRSLFNNLPVTPPLF--AYN-----TLIRAYAKTSCSIESIKLFDEMLKT 95 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~--~y~-----~li~~~~~~g~~~~a~~~~~~m~~~ 95 (462)
-++.|+.+|+.+...-|.. .-. ..+..|.++|.+++|.++|++....
T Consensus 93 PLESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 93 PLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 4778888888887543311 011 2244677788888888888876543
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.28 E-value=79 Score=21.46 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=26.5
Q ss_pred CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHH
Q 012504 150 KEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDA 186 (462)
Q Consensus 150 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 186 (462)
...++|.++++.++.++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777788877777777787777777665655544
No 335
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.01 E-value=2.1e+02 Score=23.35 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=53.1
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCC-------CcchHHHHHHHhh--hhcCchhHHHHHHHHHHhC----
Q 012504 65 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP-------DNFTYPFVVKACG--RCLLIGIGGSVHSLIFKVG---- 131 (462)
Q Consensus 65 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---- 131 (462)
+..-.+.|. ..++.|+.+....+++...+.+... +..-.+.|..++. +.|+.+-+..+++.-...+
T Consensus 10 d~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIF-DAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHH-HHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHH-HHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 334444444 4456788888888888877665433 2333444444443 3477777766666543211
Q ss_pred ---C--C-CccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 132 ---L--D-SDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 132 ---~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
. . .+..- .+.+...+..|+.+-+..+++.-.
T Consensus 89 ~i~~~~~~~d~~g-~tpL~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 89 FVNASYTDSYYKG-QTALHIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp HHTCCCCSTTTTT-CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HhhcccccccCCC-CCHHHHHHHcCCHHHHHHHHHCCC
Confidence 1 1 11122 233444566788877777777643
No 336
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.19 E-value=1.4e+02 Score=21.55 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=22.9
Q ss_pred HHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 012504 173 MIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI 216 (462)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 216 (462)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555566666666665554445555544444444443
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.04 E-value=1.1e+02 Score=22.83 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=33.2
Q ss_pred cHHHHHHHHHhCC-CchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCc
Q 012504 68 AYNTLIRAYAKTS-CSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLI 117 (462)
Q Consensus 68 ~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 117 (462)
.-..++..+...+ ..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3345566666665 6778899999988877666666655555555555543
No 338
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.91 E-value=1.7e+02 Score=21.59 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=13.7
Q ss_pred HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 012504 219 RAGESIHSYAVVNGLELDVALGTALVEMYSKCG 251 (462)
Q Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (462)
-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344445554444443333333333334444444
No 339
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.86 E-value=3.4e+02 Score=24.13 Aligned_cols=359 Identities=11% Similarity=0.086 Sum_probs=167.2
Q ss_pred hhhhcCCHHHHHHHhccCCCCCCcc--cHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcc--hHHHHHHHhhhhcCch
Q 012504 43 LTSLSISLHFTRSLFNNLPVTPPLF--AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNF--TYPFVVKACGRCLLIG 118 (462)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~~~~~~--~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~ 118 (462)
.+...|+++-+..+++.-.. ++.. ...+.+...+..|+.+-+ +.+.+.|..++.. .-.+.+...+..|+.+
T Consensus 20 ~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 94 (437)
T 1n11_A 20 VASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVA----KYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 94 (437)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHH----HHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 44567888888888876433 3322 122345555666776544 4444455544322 1123444555667654
Q ss_pred hHHHHHHHHHHhCCCCccch--HhHHHHHHHhcCChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHh
Q 012504 119 IGGSVHSLIFKVGLDSDKYI--GNTLLRMYAACKEIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRM 193 (462)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m 193 (462)
+.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-... +..-++. +...+..|+.+- ++.+
T Consensus 95 ----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~~----v~~L 165 (437)
T 1n11_A 95 ----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVRV----AELL 165 (437)
T ss_dssp ----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHH----HHHH
T ss_pred ----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHHH----HHHH
Confidence 4445555666554321 233455667788888888888765432 2222223 333445666543 3444
Q ss_pred HHCCCCCCHHH--HHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH--HHHHHHHHhcCChHHHHHHHhhccCC---
Q 012504 194 KLANESPNSVT--LVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG--TALVEMYSKCGHVEKAFKVFNLMREK--- 266 (462)
Q Consensus 194 ~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~--- 266 (462)
.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++.... ...+...+..|+.+-+..+++.-...
T Consensus 166 l~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 241 (437)
T 1n11_A 166 LERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241 (437)
T ss_dssp HHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 45555443321 112233344556554 44445555544432211 12334456678887777777654332
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCch---h
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS---ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTM---E 340 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 340 (462)
+..-.+.+ ...+..|..+- ++.+.+.|..++. ...+.+. ..+..|..+-+..++ +. |..++. .
T Consensus 242 ~~~g~t~L-~~A~~~g~~~~----v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll----~~-g~~~~~~~~~ 310 (437)
T 1n11_A 242 SVQGVTPL-HLAAQEGHAEM----VALLLSKQANGNLGNKSGLTPLH-LVAQEGHVPVADVLI----KH-GVMVDATTRM 310 (437)
T ss_dssp CTTCCCHH-HHHHHTTCHHH----HHHHHTTTCCTTCCCTTCCCHHH-HHHHHTCHHHHHHHH----HH-TCCTTCCCSS
T ss_pred CCCCCCHH-HHHHHCCCHHH----HHHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHH----hC-CccCCCCCCC
Confidence 22222222 23345565443 3444555544432 2223333 334556655444333 32 443331 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
-.+. +...+..|+.+-+.-+++.-.. ..+...... +......|.. +....+++.-......+..-...+- .-.+
T Consensus 311 g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~-L~~A~~~g~~-~iv~~Ll~~ga~~~~~~~~g~t~l~-~A~~ 386 (437)
T 1n11_A 311 GYTP-LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP-LHQAAQQGHT-DIVTLLLKNGASPNEVSSDGTTPLA-IAKR 386 (437)
T ss_dssp CCCH-HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCH-HHHHHHHHTTCCSCCCCSSSCCHHH-HHHH
T ss_pred CCCH-HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHCChH-HHHHHHHHCcCCCCCCCCCCCCHHH-HHHH
Confidence 1222 3344567777766666654321 112222222 2334456777 5555555432221111111111111 1223
Q ss_pred cCCHHHHHHHHHHHhcC
Q 012504 419 SGNWDTAAELMVAINQK 435 (462)
Q Consensus 419 ~g~~~~A~~~~~~~~~~ 435 (462)
.|. .+..++++.....
T Consensus 387 ~g~-~~~~~~l~~~~~~ 402 (437)
T 1n11_A 387 LGY-ISVTDVLKVVTDE 402 (437)
T ss_dssp TTC-HHHHHHHHHHCCC
T ss_pred cCc-HHHHHHHHhcccc
Confidence 443 5666777766543
No 340
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.60 E-value=93 Score=27.14 Aligned_cols=25 Identities=8% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhH
Q 012504 170 WSSMIAGFVACDSPSDALKVFHRMK 194 (462)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~m~ 194 (462)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566777888888888888887774
No 341
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.59 E-value=3.2e+02 Score=23.39 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=33.1
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCC---hhhHHHHHHHHHcCCC--hhHHHHHHHHhHHCCCC
Q 012504 140 NTLLRMYAACKEIDVAKAVFEEMPVRD---VVSWSSMIAGFVACDS--PSDALKVFHRMKLANES 199 (462)
Q Consensus 140 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~ 199 (462)
..++.-|...|+.++|.+.++++..|. ..+...+..+.-+.++ .+.+.+++..+.+.|+-
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 456666777777777777777776552 1223333333433322 34455666666655543
No 342
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.40 E-value=96 Score=18.85 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 012504 82 SIESIKLFDEMLKTGLRPDNFTYPFVVKAC 111 (462)
Q Consensus 82 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 111 (462)
.++|.+.|.+|++..-.++.-||...|+.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 357777887777654444666787777776
No 343
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.13 E-value=2.6e+02 Score=22.28 Aligned_cols=66 Identities=23% Similarity=0.239 Sum_probs=40.8
Q ss_pred hhHHHHHHHHH---cCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc-----hHhHHHHHHHHHHhCC
Q 012504 168 VSWSSMIAGFV---ACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN-----VRAGESIHSYAVVNGL 233 (462)
Q Consensus 168 ~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 233 (462)
..+--+|+++. +-.+++.|+-.+-+|.+.|-.|....-..++.+.-.-|. +..|...++.....|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33444555554 457899999999999998876666665566666555443 2334445555555554
No 344
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.74 E-value=1.2e+02 Score=22.17 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=16.4
Q ss_pred HHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 012504 175 AGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSAC 212 (462)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 212 (462)
..+...+..-.|.++++.+.+.+...+..|....+..+
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L 58 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSL 58 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 33333344444555555554444333444433333333
No 345
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=24.52 E-value=4.7e+02 Score=25.05 Aligned_cols=322 Identities=11% Similarity=-0.035 Sum_probs=164.9
Q ss_pred CCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHH--HHHH
Q 012504 48 ISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGG--SVHS 125 (462)
Q Consensus 48 ~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~--~~~~ 125 (462)
+++.....++.. + +.+...-.....+....|+..+|....+.+-..|. ..+..+..++..+.+.|.+.... .=++
T Consensus 86 ~~w~~~l~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~ 162 (618)
T 1qsa_A 86 EDWRGLLAFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIR 162 (618)
T ss_dssp TCHHHHHHHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCHHHHHHhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 378877776666 2 13444444566777888988888888888777663 35677788888887766554422 1122
Q ss_pred HHHHhC-----------CCCccchHhHHHHHHHh-cCChhHHHHHHhcCCCCChh---hHHHHHHHHHcCCChhHHHHHH
Q 012504 126 LIFKVG-----------LDSDKYIGNTLLRMYAA-CKEIDVAKAVFEEMPVRDVV---SWSSMIAGFVACDSPSDALKVF 190 (462)
Q Consensus 126 ~~~~~~-----------~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~ 190 (462)
.+...| ++++. ..++..+.. ..+...+........ ++.. .+...+.-+.+ .+.+.|...+
T Consensus 163 ~al~~~~~~~a~~l~~~l~~~~---~~~a~~~~al~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~A~~~~ 237 (618)
T 1qsa_A 163 LAMKAGNTGLVTVLAGQMPADY---QTIASAIISLANNPNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAENARLMI 237 (618)
T ss_dssp HHHHTTCHHHHHHHHHTCCGGG---HHHHHHHHHHHHCGGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCHHH---HHHHHHHHHHHhChHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 222221 11111 112221111 122333333333322 2211 11112222333 3778899999
Q ss_pred HHhHHCCCCCCHHHHH----HHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012504 191 HRMKLANESPNSVTLV----SLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK 266 (462)
Q Consensus 191 ~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 266 (462)
....... ..+..... .+.......+...++...+....... .+.....-.+....+.|+++.|...|..|...
T Consensus 238 ~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~ 314 (618)
T 1qsa_A 238 PSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME 314 (618)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred Hhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 8876543 22333222 22223334443455556666554433 33333334444556779999999999998764
Q ss_pred C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-h---
Q 012504 267 N---LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-M--- 339 (462)
Q Consensus 267 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~--- 339 (462)
. ....-=+..++...|+.++|..+|..+... . +|-.++. ..+.|..-.. ......+. .
T Consensus 315 ~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~~--------~~~~~~~~~~~~~ 379 (618)
T 1qsa_A 315 AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYEL--------KIDKAPQNVDSAL 379 (618)
T ss_dssp GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCCC--------CCCCCCSCCCCHH
T ss_pred ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCCC--------CCCCCChhHHhhh
Confidence 2 222233456777889999999999988642 1 2322221 1222211000 00000010 0
Q ss_pred --hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012504 340 --EHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 340 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 396 (462)
..-..-+..+...|....|...+..+....+......+.......|.. +.+.....
T Consensus 380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~-~~~v~~~~ 437 (618)
T 1qsa_A 380 TQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWW-DLSVQATI 437 (618)
T ss_dssp HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred ccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCh-HHHHHHHH
Confidence 011123455667888888887776654444444444444445566666 66654443
No 346
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.35 E-value=3.5e+02 Score=23.44 Aligned_cols=60 Identities=8% Similarity=0.160 Sum_probs=34.2
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCCh---hhHHHHHHHHHcCC-ChhHHHHHHHHhHHCCCC
Q 012504 140 NTLLRMYAACKEIDVAKAVFEEMPVRDV---VSWSSMIAGFVACD-SPSDALKVFHRMKLANES 199 (462)
Q Consensus 140 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~ 199 (462)
..++.-|...|+.++|...++++..|.- .+...+..++-+.. ..+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4577778888888888888888876631 12222222222211 234455666666655543
No 347
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.99 E-value=1.1e+02 Score=20.63 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=17.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHH
Q 012504 408 NYVLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
.+...+..+.+.|+|++|++..+..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3455677777888888887666543
No 348
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.46 E-value=2.9e+02 Score=21.82 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=12.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
..|.+.|.+ ++|.+++++..+..+.+
T Consensus 125 ~VCiekg~F-k~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 125 AVCMENGNF-KEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHTTCH-HHHHHHHHHHC-----C
T ss_pred HHHHHccch-HHHHHHHHHHhcCCCCc
Confidence 345566666 66666666655444333
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.44 E-value=2.4e+02 Score=21.38 Aligned_cols=60 Identities=15% Similarity=-0.091 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHCCCCC--CcchHHHHHH-H-----hhhhcCchhHHHHHHHHHH
Q 012504 69 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRP--DNFTYPFVVK-A-----CGRCLLIGIGGSVHSLIFK 129 (462)
Q Consensus 69 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 129 (462)
|...+..|- .|++-+|.++++..-.....| ....|..+|. . ..+.|+...|..++.....
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444444443 488889999998887664445 4455666666 2 2346788888888777765
No 350
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.70 E-value=2.8e+02 Score=22.26 Aligned_cols=56 Identities=4% Similarity=-0.191 Sum_probs=33.2
Q ss_pred HHHHHhCCCchhHHHHHHHHHHCCCCCCc-------chHHHHHHHhhhh---cCchhHHHHHHHHHH
Q 012504 73 IRAYAKTSCSIESIKLFDEMLKTGLRPDN-------FTYPFVVKACGRC---LLIGIGGSVHSLIFK 129 (462)
Q Consensus 73 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 129 (462)
+...+..|+.+....+++.+.+.|..++. .-.+.+ ...+.. |+.+-+..+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCCc
Confidence 44556678888777788777777765543 223333 333344 777666666655443
No 351
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.41 E-value=1.9e+02 Score=23.43 Aligned_cols=54 Identities=6% Similarity=-0.149 Sum_probs=32.5
Q ss_pred HHHhhhhcCchhHHHHHHHHHHhCCCCccch-------HhHHHHHHH--hcCChhHHHHHHhc
Q 012504 108 VKACGRCLLIGIGGSVHSLIFKVGLDSDKYI-------GNTLLRMYA--ACKEIDVAKAVFEE 161 (462)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~A~~~~~~ 161 (462)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3445677889988888888888876665432 223332221 45666655555543
No 352
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.45 E-value=1.8e+02 Score=18.58 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=34.8
Q ss_pred HhHHCCCCCCHHHHHHHHHHHhccc-chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 192 RMKLANESPNSVTLVSLVSACTSLI-NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 192 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..+....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 45566766665443 4455555544 456677777777776544555555555555555553
Done!