BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012506
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/419 (82%), Positives = 368/419 (87%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAPVL+A+IEKTN++PSEVGDIV
Sbjct: 22 YQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIV 81
Query: 102 VGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGI 161
VGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSGLQ GFYDIGI
Sbjct: 82 VGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 141
Query: 162 GAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 221
GAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDS
Sbjct: 142 GAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDS 201
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
HRK GKFKDEIIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFK
Sbjct: 202 HRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFK 261
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
KDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIM
Sbjct: 262 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAI 321
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
K+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGA+AIGHPLG TGAR
Sbjct: 322 PAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGAR 381
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVRKVESNNFLSKD 460
CVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD DEL N RKVE+ LSKD
Sbjct: 382 CVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQGLLSKD 440
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/399 (83%), Positives = 355/399 (88%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAPVL+A+IEKTN++PSEVGDIV
Sbjct: 5 YQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIV 64
Query: 102 VGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGI 161
VGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSGLQ GFYDIGI
Sbjct: 65 VGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 124
Query: 162 GAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 221
GAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDS
Sbjct: 125 GAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDS 184
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
HRK GKFKDEIIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFK
Sbjct: 185 HRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFK 244
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
KDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIM
Sbjct: 245 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAI 304
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
K+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGA+AIGHPLG TGAR
Sbjct: 305 PAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGAR 364
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGD 440
CVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD
Sbjct: 365 CVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGD 403
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/408 (78%), Positives = 355/408 (87%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y R SV+GDDVVIVAAYR+ LCK+KRGG KDTYPDD+LAPVLKA+IEKTN++P+EVGDIV
Sbjct: 25 YQRNSVFGDDVVIVAAYRSPLCKAKRGGLKDTYPDDILAPVLKALIEKTNINPAEVGDIV 84
Query: 102 VGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGI 161
VG+VL GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQ GFYDIGI
Sbjct: 85 VGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 144
Query: 162 GAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 221
GAGLESMT NPMAWEGSVNPKVK QAQ+CLLPMG+TSENVA +F +TR+EQDQAAV S
Sbjct: 145 GAGLESMTANPMAWEGSVNPKVKTMAQAQDCLLPMGITSENVAQKFSITRQEQDQAAVGS 204
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
HRK G+FKDEIIP+ TKIVDPKTGDEKPVTISVDDGIRP TS+++LAKLKPVF+
Sbjct: 205 HRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTISVDDGIRPGTSLADLAKLKPVFR 264
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
KDG+TTAG SSQVSDGAGAVLLMKRS+A++KGLPILGVFRTFAAVGV P+IM
Sbjct: 265 KDGSTTAGTSSQVSDGAGAVLLMKRSIALQKGLPILGVFRTFAAVGVPPSIMGIGPAVAI 324
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
K+AGLQ+DDIDLFEINEAFASQFVYC+ KL +DP+KINVNGGA+AIGHPLG TGAR
Sbjct: 325 PAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDPQKINVNGGAMAIGHPLGATGAR 384
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVR 449
CVATLLHEMKRRGRDCRFGV+SMCIGTGMGAAAVFERGD DELCN +
Sbjct: 385 CVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDACDELCNAK 432
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/387 (54%), Positives = 274/387 (70%), Gaps = 3/387 (0%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DVV+V RTA+C++ RGGFKDT PD+LL+ V+ AV++ N+ P ++GDI VG VL PG+
Sbjct: 31 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA 90
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
A R+A F + PETVP+ TVNRQCSSGLQ G YDIG+ G+ESM++
Sbjct: 91 G-AIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSL 149
Query: 171 NPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXX 230
G++ ++ E+A++CL+PMG+TSENVA RFG++R++QD A+ S +K
Sbjct: 150 ADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQS 209
Query: 231 XGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGN 290
G F+ EI+PV T + D K G ++ +T++ D+GIRP+T++ LAKLKP FKKDG+TTAGN
Sbjct: 210 KGCFQAEIVPVTTTVHDDK-GTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGN 268
Query: 291 SSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGL 350
SSQVSDGA A+LL +RS A GLPILGV R++A VGV P IM + AGL
Sbjct: 269 SSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGL 328
Query: 351 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEM 410
+ D+D+FEINEAFASQ YC KL L PEK+N GGA+A+GHPLG TGAR V TLL+E+
Sbjct: 329 TVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNEL 388
Query: 411 KRRGRDCRFGVISMCIGTGMGAAAVFE 437
KRRG+ +GV+SMCIGTGMGAAAVFE
Sbjct: 389 KRRGKRA-YGVVSMCIGTGMGAAAVFE 414
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/397 (44%), Positives = 240/397 (60%), Gaps = 26/397 (6%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVI----EKTNVDPSEVGDIVVGTV 105
+DVVIVAA R+A+ K +G FKD D LL L I E D + + ++ G V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 106 LAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGL 165
L G+ A+E R A +G P + P +NRQCSSGL G DIG+ G+
Sbjct: 70 LNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
Query: 166 ESMT-----VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 220
ESMT VNP+ S +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +
Sbjct: 129 ESMTNNYKNVNPLGMISS--EELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAAN 186
Query: 221 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 280
S++K G F+DEI+P+ K+ D D+G RPN + L+ ++P F
Sbjct: 187 SYQKAYKAKNEGLFEDEILPI--KLPDGSICQS-------DEGPRPNVTAESLSSIRPAF 237
Query: 281 KKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 339
KD GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IM
Sbjct: 238 IKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAY 297
Query: 340 XXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 399
++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TG
Sbjct: 298 AIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTG 357
Query: 400 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 436
AR VAT+L E+K+ + GV+SMCIGTGMGAAA+F
Sbjct: 358 ARQVATILRELKKD----QIGVVSMCIGTGMGAAAIF 390
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/397 (44%), Positives = 240/397 (60%), Gaps = 26/397 (6%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVI----EKTNVDPSEVGDIVVGTV 105
+DVVIVAA R+A+ K +G FKD D LL L I E D + + ++ G V
Sbjct: 7 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 66
Query: 106 LAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGL 165
L G+ A+E R A +G P + P +NRQCSSGL G DIG+ G+
Sbjct: 67 LNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 125
Query: 166 ESMT-----VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 220
ESMT VNP+ S +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +
Sbjct: 126 ESMTNNYKNVNPLGMISS--EELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAAN 183
Query: 221 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 280
S++K G F+DEI+P+ K+ D D+G RPN + L+ ++P F
Sbjct: 184 SYQKAYKAKNEGLFEDEILPI--KLPDGSICQS-------DEGPRPNVTAESLSSIRPAF 234
Query: 281 KKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 339
KD GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IM
Sbjct: 235 IKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAY 294
Query: 340 XXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 399
++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TG
Sbjct: 295 AIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTG 354
Query: 400 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 436
AR VAT+L E+K+ + GV+SMCIGTGMGAAA+F
Sbjct: 355 ARQVATILRELKKD----QIGVVSMCIGTGMGAAAIF 387
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 261 bits (666), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 156/396 (39%), Positives = 219/396 (55%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
A+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GANPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/396 (39%), Positives = 218/396 (55%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 59
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 60 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 119
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 120 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 179
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 180 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 233
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 234 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 293
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 294 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 353
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 354 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 387
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 155/396 (39%), Positives = 218/396 (55%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 218/396 (55%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 218/396 (55%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEADEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 218/396 (55%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG+P+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 256 bits (653), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 217/396 (54%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 255 bits (651), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 217/396 (54%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 59
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 60 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 119
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 120 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 179
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 180 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 233
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 234 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 293
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 294 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 353
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 354 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 387
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 254 bits (650), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 217/396 (54%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 254 bits (650), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 217/396 (54%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 158/410 (38%), Positives = 219/410 (53%), Gaps = 37/410 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+ IV A RT + K G PDDLLA L +++++ V EV D+ G G
Sbjct: 3 EAWIVEAVRTPIGKHG-GALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
+ RMA AGFP V TVNR C SGL+ G + IG+G+ESM+
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 171 NPMA---------------------WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGV 209
P A W VNPK++A ++ MG T+EN+A +G+
Sbjct: 122 APYAVPKPERGFPTGNLVMYDTTLGWR-FVNPKMQALYGTES----MGETAENLAEMYGI 176
Query: 210 TRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 269
R+EQD+ A+ SH+K G+F+DE++PV K G E+ + + D+G R +TS
Sbjct: 177 RREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVK-----RGKEE-ILVEQDEGPRRDTS 230
Query: 270 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
+ +LA L+PVF++ GT TAGNSS ++DGA AVLL+ A GL L R A GV
Sbjct: 231 LEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVP 290
Query: 330 PAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQ--FVYCRNKLGLDPEKINVNGG 387
P IM + AGL D+ L E+NEAFA+Q V L ++ +++N NGG
Sbjct: 291 PRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGG 350
Query: 388 ALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
A+A+GHPLG +GAR + TL+HEM+R R +FG+ +MCIG G G A V E
Sbjct: 351 AIALGHPLGASGARILTTLVHEMRR--RKVQFGLATMCIGVGQGIAVVVE 398
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 218/396 (55%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIG+P+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 217/396 (54%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG+P+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 251 bits (640), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 216/396 (54%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 251 bits (640), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 216/396 (54%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++ IG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLXIGGGMGVAMCIE 390
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/396 (38%), Positives = 215/396 (54%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++ IG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLXIGGGMGVAMCIE 390
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 215/397 (54%), Gaps = 20/397 (5%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVI AA R+ + + G K+ P +L PVL+ +++ V+P EV ++++G + +
Sbjct: 6 NVVITAAVRSPIG-TFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQR-T 63
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
A+ R AA AGFP+TV T+ RQ SSG+Q G ++ + G+E+M+
Sbjct: 64 DEANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSS 123
Query: 171 NPMA-----W-----EGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 220
+P A W G + V + + MG T+EN+ ++ +TR+EQD+ A+
Sbjct: 124 SPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVALR 183
Query: 221 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 280
SH G F D+I+P+ K K V S D+ R + + +LA LKP F
Sbjct: 184 SHTLALKAIESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAGLKPAF 237
Query: 281 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 340
+KDG+ TAGN+S ++DG+ ++LM A KGL L ++ GVDP IM
Sbjct: 238 RKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPA 297
Query: 341 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 400
+ L+D DL EINEAFA+Q++ +L LD EK+NVNG + +GHP+G TGA
Sbjct: 298 IRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGA 357
Query: 401 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
R +L+HE+KRRG + G+ S+C+G G+G A E
Sbjct: 358 RITVSLIHELKRRGLEK--GIASLCVGGGIGVALFIE 392
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 244 bits (623), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 217/396 (54%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 216/399 (54%), Gaps = 21/399 (5%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVI +A RTA+ S G FK +L K I++ N+ P + + ++G VL G
Sbjct: 8 EVVIASAARTAVG-SFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
+ + R A AG P P T+N C SGL+ G DI + G E+M++
Sbjct: 67 GQ-NIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSM 125
Query: 171 NP-----------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAV 219
+P M V+ +K MG+T+EN+A ++ +TR+EQD+ A+
Sbjct: 126 SPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELAL 185
Query: 220 DSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 279
S K GKF +EI+PV K G + + D+ I+P T++ +LAKL+P
Sbjct: 186 ASQNKAEKAQAEGKFDEEIVPVVIK------GRKGDTVVDKDEYIKPGTTMEKLAKLRPA 239
Query: 280 FKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 339
FKKDGT TAGN+S ++DGA +++M + A G+ L ++ GVDP IM
Sbjct: 240 FKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVP 299
Query: 340 XXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 399
++A + ++DIDL E NEAFA+Q V L +D K+NVNGGA+AIGHP+G +G
Sbjct: 300 ATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSG 359
Query: 400 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 438
AR + TLL+EMKR RD + G+ ++CIG GMG + +R
Sbjct: 360 ARILTTLLYEMKR--RDAKTGLATLCIGGGMGTTLIVKR 396
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/404 (37%), Positives = 223/404 (55%), Gaps = 30/404 (7%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DVVIV+A RT + S G FK+T L +K I + ++ SE+ ++++G VL G
Sbjct: 6 DVVIVSAVRTPIG-SFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT- 169
+ + R A AG P +VP TVN+ C SGL+ G D+ I G E+M+
Sbjct: 65 GQ-NVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQ 123
Query: 170 ---VNPMAWEGS------------VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQ 214
+ P A GS + + AF Q MG+T+EN+A +F TR+ Q
Sbjct: 124 APYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYH-----MGITAENIATKFEFTREMQ 178
Query: 215 DQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELA 274
D+ A++S K +FK+EI+PV I + G K TI D+ + + L+
Sbjct: 179 DKLALESQNKAENAIKNNRFKEEIVPVDVLI---RRG--KIETIDKDEYPKLGMTFEGLS 233
Query: 275 KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMX 334
KLKP FKKDGT TAGN+S ++DGA ++LM + A G+ L +++A+ GV+P +M
Sbjct: 234 KLKPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMG 293
Query: 335 XXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHP 394
K AGL ++DIDL E NEAFA+Q + +N+L +D K+NVNGGA+A+GHP
Sbjct: 294 TGPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHP 353
Query: 395 LGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 438
+G +GAR + TL++EM++ R G+ ++CIG G G + V R
Sbjct: 354 IGASGARILVTLIYEMQK--RKVETGLATLCIGGGQGISMVVSR 395
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 216/396 (54%), Gaps = 20/396 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 401
+ AG ++ D+DL E EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 297 RKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGAR 356
Query: 402 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 437
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 357 ILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/395 (38%), Positives = 212/395 (53%), Gaps = 18/395 (4%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVVGTVLAPG 109
DVVIV RT + +SK G ++T +D+ A ++ V+E+ + VDP EV D++ G V
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT 169
Q + RMA+ P T +TV+R C S + G D+ + G+E M
Sbjct: 66 EQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMG 125
Query: 170 VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXX 229
M NP + + + + MG+T+E + G++R++QD AV SH+
Sbjct: 126 HVSMMHGVDPNPHMSLYAAKASGM--MGLTAEMLGKMHGISREQQDAFAVRSHQLAHKAT 183
Query: 230 XXGKFKDEIIPVATKIVDPKTGDEKPV--TISVDDGIRPNTSVSELAKLKPVFK-KDGTT 286
GKFKDEIIP+ + DE D+ IRP+T++ LA LKP F K GT
Sbjct: 184 VEGKFKDEIIPM-------QGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTV 236
Query: 287 TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXK 346
TAG SSQ++DGA +++M A GL L V R+ A GVDPAIM K
Sbjct: 237 TAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALK 296
Query: 347 SAGLQLDDIDLFEINEAFASQFVYCRNKLG-LDP--EKINVNGGALAIGHPLGTTGARCV 403
AGL + DID E+NEAFA+Q + L LD EK+N++GGA+A+GHP G +GAR
Sbjct: 297 RAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARIS 356
Query: 404 ATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 438
TLL+ MK+ G FG+ +MCIG G G A VFER
Sbjct: 357 GTLLNVMKQNG--GTFGLSTMCIGLGQGIATVFER 389
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 226 bits (575), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 216/403 (53%), Gaps = 26/403 (6%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
D VVIV+A RT + S G DL + V+K V+++ V P +V +++ G VLA G
Sbjct: 6 DPVVIVSAART-IIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAG 64
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT 169
+ + R A+ AG P +VP + SGL+ G I + G+E+M+
Sbjct: 65 CGQ-NPVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAGGMENMS 123
Query: 170 VNPMAWEGSVNPKVKAF------------EQAQNCLLPMGVTSENVAHRFGVTRKEQDQA 217
P K+ + NC MG+T+ENVA ++ V+R++QD+
Sbjct: 124 KAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC--HMGITAENVAKKWQVSREDQDKV 181
Query: 218 AVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLK 277
AV S + G F EI+PV +V + G + + D+ R +++ ++KLK
Sbjct: 182 AVLSQNRTENAQKAGHFDKEIVPV---LVSTRKG---LIEVKTDEFPRHGSNIEAMSKLK 235
Query: 278 PVFKKDGT--TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXX 335
P F DGT T N+S ++DGA AV+LMK+S A ++GL L +++ VGV+P+IM
Sbjct: 236 PYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGI 295
Query: 336 XXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPL 395
AG L+D+D+FEINEAFA+ +LGL+PEK+N+ GGA+A+GHPL
Sbjct: 296 GPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPL 355
Query: 396 GTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 438
G +G R + TLLH ++R GR GV ++CIG GMG A +R
Sbjct: 356 GASGCRILVTLLHTLERMGRS--RGVAALCIGGGMGIAMCVQR 396
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 147/394 (37%), Positives = 201/394 (51%), Gaps = 14/394 (3%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAP 108
+ VVIV A RT +SK G F++ +DL A + ++++ + ++ + + DI G V
Sbjct: 2 EQVVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQT 61
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESM 168
Q + R AA A P +VP TVNR C S Q G + + G+E
Sbjct: 62 LEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHX 121
Query: 169 TVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 228
P + +P + G+T+E ++ G++R+ QDQ A SH +
Sbjct: 122 GHVPXSHGVDFHPGLS--RNVAKAAGXXGLTAEXLSRLHGISREXQDQFAARSHARAWAA 179
Query: 229 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK-DGTTT 287
G FK EIIP D G K + D+ IRP T+V L+ L+P F GT T
Sbjct: 180 TQSGAFKTEIIPTGGHDAD---GVLK--QFNYDEVIRPETTVEALSTLRPAFDPVSGTVT 234
Query: 288 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKS 347
AG SS +SDGA A L+ S A GL R+ A VG DP+I K
Sbjct: 235 AGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPVPASKLALKK 294
Query: 348 AGLQLDDIDLFEINEAFASQFVYCRNKLGLDP---EKINVNGGALAIGHPLGTTGARCVA 404
AGL DID+FE NEAFA+Q + C LGL EKIN+NGGA+A+GHPLG +GAR
Sbjct: 295 AGLSASDIDVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNGGAIALGHPLGCSGARIST 354
Query: 405 TLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 438
TL++ +R +D +FG+ + CIG G G A VFER
Sbjct: 355 TLINLXER--KDAQFGLATXCIGLGQGIATVFER 386
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 199/414 (48%), Gaps = 39/414 (9%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAP 108
++ I A RT K K G + P +L+ ++ + + ++D + + D+++G V
Sbjct: 7 EEAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPV 66
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESM 168
G Q R A AG PET +NR C+SGL+ G+ D+ + G+ESM
Sbjct: 67 GDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESM 126
Query: 169 TVNPMAWEG---SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKX 225
+ PM +G + +P+ + +P G+ ++ +A G +R++ D A+ S +K
Sbjct: 127 SRVPMGSDGGAWATDPET----NYRIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKA 182
Query: 226 XXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF----- 280
G F ++PV + V + D+ +RP+T++ LAKLK F
Sbjct: 183 AAAWSGGYFAKSVVPVRDQ--------NGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGE 234
Query: 281 ----------------KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFA 324
K + T GNSS + DGA VL+ +GL A
Sbjct: 235 MGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATA 294
Query: 325 AVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINV 384
G DP IM AGL +DDIDLFE+NEAFAS + + L + EK+NV
Sbjct: 295 TSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNV 354
Query: 385 NGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 438
NGGA+A+GHPLG TGA T++ E++R R+ R +I++CIG GMG A + ER
Sbjct: 355 NGGAIAMGHPLGATGAMITGTMVDELER--RNARRALITLCIGGGMGVATIIER 406
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 193/398 (48%), Gaps = 22/398 (5%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVIV+A RT + S G L + ++ IEK + EV + +G VL G
Sbjct: 9 EVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
+A R A AG P + P T+N+ C+SG++ G D+ + G+ESM+
Sbjct: 68 GQAP-TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSN 126
Query: 171 NPMAWEGSVNPK---------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P P VK + MG +EN A + + R EQD A++S
Sbjct: 127 VPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINS 186
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
+ + GKF +E+IPV + +P + +D S++ KLK VF+
Sbjct: 187 YTRSKAAWEAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQ 240
Query: 282 KD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 340
K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 241 KENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYA 300
Query: 341 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 400
K GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +GA
Sbjct: 301 ASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGA 360
Query: 401 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 438
R V L H +K+ +G+ S+C G G +A + ++
Sbjct: 361 RIVGHLTHALKQG----EYGLASICNGGGGASAMLIQK 394
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 193/400 (48%), Gaps = 22/400 (5%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAP 108
G +VVIV+A RT + S G L + ++ IEK + EV + +G VL
Sbjct: 18 GSEVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQG 76
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESM 168
G +A R A AG P + P T+N+ +SG++ G D+ + G+ESM
Sbjct: 77 GEGQAP-TRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESM 135
Query: 169 TVNPMAWEGSVNPK---------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAV 219
+ P P VK + MG +EN A + + R EQD A+
Sbjct: 136 SNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAI 195
Query: 220 DSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 279
+S+ + GKF +E+IPV + +P + +D S++ KLK V
Sbjct: 196 NSYTRSKAAWEAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTV 249
Query: 280 FKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXX 338
F+K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 250 FQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPV 309
Query: 339 XXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTT 398
K GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +
Sbjct: 310 YAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMS 369
Query: 399 GARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 438
GAR V L H +K+ +G+ S+C G G +A + ++
Sbjct: 370 GARIVGHLTHALKQ----GEYGLASICNGGGGASAMLIQK 405
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 192/398 (48%), Gaps = 22/398 (5%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVIV+A RT + S G L + ++ IEK + EV + +G VL G
Sbjct: 9 EVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
+A R A AG P + P T+N+ +SG++ G D+ + G+ESM+
Sbjct: 68 GQAP-TRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMSN 126
Query: 171 NPMAWEGSVNPK---------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P P VK + MG +EN A + + R EQD A++S
Sbjct: 127 VPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINS 186
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
+ + GKF +E+IPV + +P + +D S++ KLK VF+
Sbjct: 187 YTRSKAAWEAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQ 240
Query: 282 KD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 340
K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 241 KENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYA 300
Query: 341 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 400
K GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +GA
Sbjct: 301 ASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGA 360
Query: 401 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 438
R V L H +K+ +G+ S+C G G +A + ++
Sbjct: 361 RIVGHLTHALKQ----GEYGLASICNGGGGASAMLIQK 394
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 264 IRPNTSVS--ELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR 311
++PNTSV L L P TAGN S+G AVLL K+S+A R
Sbjct: 194 LKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLARR 243
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 286 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 321
+ A + +++GAG ++L + S A R+G P+L V R
Sbjct: 254 SKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLR 289
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 286 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 286 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 286 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1171 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,281,853
Number of Sequences: 62578
Number of extensions: 467981
Number of successful extensions: 1103
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 45
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)