Query 012508
Match_columns 462
No_of_seqs 126 out of 1187
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 2E-56 4.3E-61 449.9 35.3 399 42-454 58-465 (467)
2 KOG1304 Amino acid transporter 100.0 2.6E-54 5.7E-59 413.9 31.8 386 39-453 42-449 (449)
3 KOG1303 Amino acid transporter 100.0 2.7E-51 5.9E-56 400.6 31.4 397 38-456 32-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 1.6E-52 3.4E-57 420.0 0.3 389 42-450 1-408 (409)
5 PLN03074 auxin influx permease 100.0 1.4E-46 3E-51 376.4 32.6 385 40-459 42-457 (473)
6 KOG1305 Amino acid transporter 100.0 7E-46 1.5E-50 361.0 26.3 405 41-458 3-410 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1E-40 2.2E-45 301.4 7.5 391 39-459 112-520 (524)
8 COG0814 SdaC Amino acid permea 100.0 4.5E-33 9.7E-38 275.3 32.4 395 39-450 4-412 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 2.9E-23 6.2E-28 204.2 36.6 372 42-442 1-391 (394)
10 PRK10483 tryptophan permease; 99.9 6E-23 1.3E-27 199.8 34.5 379 39-447 6-404 (414)
11 PRK09664 tryptophan permease T 99.9 1.4E-22 3.1E-27 196.9 34.3 379 39-446 4-404 (415)
12 TIGR00837 araaP aromatic amino 99.9 2.2E-23 4.7E-28 206.7 27.8 344 50-421 3-359 (381)
13 PRK15132 tyrosine transporter 99.9 3.1E-22 6.7E-27 195.8 32.5 372 44-446 3-392 (403)
14 PRK13629 threonine/serine tran 99.9 3.9E-21 8.5E-26 186.9 30.0 390 45-448 20-441 (443)
15 TIGR00814 stp serine transport 99.9 4.4E-20 9.6E-25 181.2 25.4 350 45-417 4-375 (397)
16 KOG1287 Amino acid transporter 99.7 6.4E-15 1.4E-19 143.8 22.7 370 38-428 8-393 (479)
17 TIGR00912 2A0309 spore germina 99.7 5.3E-14 1.1E-18 138.5 28.0 340 42-419 1-352 (359)
18 PRK10655 potE putrescine trans 99.7 9.6E-13 2.1E-17 133.1 35.5 241 40-299 4-246 (438)
19 TIGR03810 arg_ornith_anti argi 99.6 1.5E-12 3.2E-17 132.6 35.2 356 42-420 1-379 (468)
20 PRK10249 phenylalanine transpo 99.6 2E-12 4.3E-17 131.2 35.5 293 39-355 18-322 (458)
21 PRK10435 cadB lysine/cadaverin 99.6 2.9E-12 6.3E-17 129.2 34.5 243 39-301 2-246 (435)
22 TIGR00905 2A0302 transporter, 99.6 1.2E-12 2.6E-17 133.5 31.8 245 41-299 6-255 (473)
23 PRK10644 arginine:agmatin anti 99.6 1.2E-11 2.5E-16 125.4 37.7 244 39-301 5-250 (445)
24 PRK15049 L-asparagine permease 99.6 9.7E-12 2.1E-16 127.3 36.3 358 39-420 25-405 (499)
25 TIGR00911 2A0308 L-type amino 99.6 2.1E-12 4.6E-17 132.7 30.6 250 38-301 38-294 (501)
26 TIGR00909 2A0306 amino acid tr 99.6 6.9E-12 1.5E-16 126.6 31.5 297 41-355 2-308 (429)
27 PRK11049 D-alanine/D-serine/gl 99.5 4.6E-11 1E-15 121.7 35.7 293 39-355 17-324 (469)
28 PRK11021 putative transporter; 99.5 4.9E-11 1.1E-15 119.5 35.2 226 45-296 2-231 (410)
29 PRK11387 S-methylmethionine tr 99.5 9.2E-11 2E-15 119.6 37.7 293 39-355 11-319 (471)
30 PRK10746 putative transport pr 99.5 5.5E-11 1.2E-15 120.7 35.5 358 39-420 7-387 (461)
31 TIGR01773 GABAperm gamma-amino 99.5 2.3E-11 5E-16 123.5 32.5 294 38-355 8-315 (452)
32 PRK10238 aromatic amino acid t 99.5 2.7E-11 5.9E-16 122.8 32.3 355 39-420 9-385 (456)
33 TIGR00930 2a30 K-Cl cotranspor 99.5 2.2E-11 4.8E-16 131.8 33.1 245 39-296 73-334 (953)
34 PRK10836 lysine transporter; P 99.5 4.5E-10 9.7E-15 115.1 40.4 298 39-355 12-326 (489)
35 PRK11357 frlA putative fructos 99.5 9.1E-11 2E-15 118.9 34.8 242 39-298 5-251 (445)
36 PF13520 AA_permease_2: Amino 99.5 3.2E-11 6.9E-16 121.7 30.7 288 44-355 1-302 (426)
37 TIGR00906 2A0303 cationic amin 99.5 3.6E-11 7.7E-16 124.4 31.2 369 39-419 25-409 (557)
38 TIGR00913 2A0310 amino acid pe 99.5 3E-10 6.5E-15 116.3 37.5 237 41-296 1-251 (478)
39 TIGR00908 2A0305 ethanolamine 99.5 2.8E-10 6.1E-15 115.3 36.5 240 38-296 3-245 (442)
40 PF03845 Spore_permease: Spore 99.5 2E-11 4.3E-16 118.1 24.7 289 43-357 1-293 (320)
41 PRK10580 proY putative proline 99.5 8.3E-10 1.8E-14 112.2 37.0 239 39-297 6-254 (457)
42 PRK10197 gamma-aminobutyrate t 99.4 2.6E-09 5.5E-14 108.2 33.9 338 53-420 3-367 (446)
43 COG0531 PotE Amino acid transp 99.3 2.4E-08 5.2E-13 102.0 34.7 251 38-303 8-262 (466)
44 KOG3832 Predicted amino acid t 99.3 8.3E-11 1.8E-15 100.2 13.0 223 44-273 12-303 (319)
45 COG0833 LysP Amino acid transp 99.2 9.5E-08 2.1E-12 94.6 30.6 355 39-419 41-426 (541)
46 COG1113 AnsP Gamma-aminobutyra 99.2 3E-08 6.6E-13 96.0 25.9 355 39-420 10-388 (462)
47 TIGR03428 ureacarb_perm permea 99.1 1.2E-06 2.5E-11 89.7 38.0 259 39-302 10-273 (475)
48 PRK15238 inner membrane transp 99.1 2.1E-06 4.6E-11 88.2 38.3 240 40-297 5-266 (496)
49 KOG1286 Amino acid transporter 99.1 1E-08 2.2E-13 104.5 20.8 367 39-418 27-420 (554)
50 TIGR00907 2A0304 amino acid pe 99.1 3.9E-07 8.4E-12 93.4 31.7 248 39-296 9-271 (482)
51 TIGR00910 2A0307_GadC glutamat 99.0 2.7E-06 5.9E-11 87.4 33.4 229 41-295 3-247 (507)
52 TIGR03813 put_Glu_GABA_T putat 99.0 6E-06 1.3E-10 84.5 35.5 242 43-302 2-254 (474)
53 PF00324 AA_permease: Amino ac 98.8 9.2E-08 2E-12 97.9 14.0 286 53-355 6-318 (478)
54 PRK11375 allantoin permease; P 98.7 6.5E-05 1.4E-09 76.6 32.8 316 73-412 58-394 (484)
55 COG3949 Uncharacterized membra 98.7 3.7E-05 8.1E-10 71.6 25.8 100 46-146 5-107 (349)
56 TIGR00800 ncs1 NCS1 nucleoside 98.6 8.3E-05 1.8E-09 75.3 29.4 255 41-304 11-273 (442)
57 KOG1289 Amino acid transporter 98.5 2.3E-05 5E-10 77.8 21.1 63 241-303 250-313 (550)
58 PRK09442 panF sodium/panthothe 98.5 0.0011 2.4E-08 67.9 34.2 153 39-210 38-195 (483)
59 TIGR02119 panF sodium/pantothe 98.5 0.00095 2.1E-08 68.3 32.9 152 39-209 37-193 (471)
60 COG1457 CodB Purine-cytosine p 98.4 0.00075 1.6E-08 66.7 29.4 277 99-417 76-358 (442)
61 PF00474 SSF: Sodium:solute sy 98.4 0.00026 5.6E-09 70.9 26.9 154 40-213 4-160 (406)
62 PRK12488 acetate permease; Pro 98.4 0.0028 6E-08 66.0 35.2 152 38-210 63-217 (549)
63 COG0591 PutP Na+/proline sympo 98.3 0.0023 5E-08 65.5 31.6 147 40-205 36-187 (493)
64 TIGR02711 symport_actP cation/ 98.3 0.0036 7.7E-08 65.1 33.3 149 38-207 63-214 (549)
65 TIGR02358 thia_cytX probable h 98.3 0.0024 5.2E-08 63.4 29.4 296 72-411 26-324 (386)
66 TIGR00813 sss transporter, SSS 98.2 0.0033 7.2E-08 63.0 29.3 147 41-207 2-150 (407)
67 COG1953 FUI1 Cytosine/uracil/t 98.1 0.014 3E-07 58.1 29.0 218 187-417 184-413 (497)
68 PRK09395 actP acetate permease 98.0 0.026 5.6E-07 58.9 34.0 149 39-207 66-216 (551)
69 TIGR03648 Na_symport_lg probab 98.0 0.033 7.1E-07 58.1 31.7 149 38-206 28-178 (552)
70 PRK11017 codB cytosine permeas 97.8 0.041 8.8E-07 55.0 30.8 206 72-304 39-245 (404)
71 TIGR00796 livcs branched-chain 97.8 0.037 8.1E-07 54.4 33.4 317 51-417 2-346 (378)
72 PRK00701 manganese transport p 97.7 0.072 1.6E-06 53.7 31.0 43 104-146 93-135 (439)
73 PRK10484 putative transporter; 97.7 0.1 2.3E-06 54.0 34.6 162 38-209 34-197 (523)
74 PRK15419 proline:sodium sympor 97.6 0.11 2.4E-06 53.6 32.0 151 38-209 36-196 (502)
75 TIGR02121 Na_Pro_sym sodium/pr 97.6 0.12 2.5E-06 53.2 33.0 149 39-207 33-190 (487)
76 COG0733 Na+-dependent transpor 97.4 0.022 4.8E-07 56.0 19.7 300 44-356 9-335 (439)
77 PF02554 CstA: Carbon starvati 97.4 0.014 2.9E-07 56.0 17.4 103 44-146 52-155 (376)
78 TIGR00835 agcS amino acid carr 97.2 0.29 6.3E-06 48.8 26.3 84 42-126 45-138 (425)
79 PF02133 Transp_cyt_pur: Perme 97.2 0.007 1.5E-07 61.3 13.9 111 40-151 5-117 (440)
80 COG1914 MntH Mn2+ and Fe2+ tra 97.1 0.34 7.4E-06 48.1 27.8 43 104-146 76-118 (416)
81 KOG1288 Amino acid transporter 97.0 0.091 2E-06 54.0 19.3 94 49-146 77-173 (945)
82 PRK15015 carbon starvation pro 96.8 0.025 5.4E-07 58.0 13.3 100 47-146 86-186 (701)
83 PF01566 Nramp: Natural resist 96.7 0.33 7.1E-06 47.7 20.9 43 104-146 41-83 (358)
84 KOG2083 Na+/K+ symporter [Inor 96.7 0.0062 1.4E-07 61.2 8.1 222 46-293 37-274 (643)
85 KOG2082 K+/Cl- cotransporter K 96.6 0.67 1.5E-05 48.4 21.7 103 44-147 115-221 (1075)
86 COG4147 DhlC Predicted symport 96.4 1.2 2.5E-05 44.4 23.7 182 94-299 93-293 (529)
87 KOG2466 Uridine permease/thiam 96.1 0.56 1.2E-05 46.6 17.2 267 39-315 51-333 (572)
88 COG1966 CstA Carbon starvation 96.0 0.78 1.7E-05 46.4 18.0 103 44-146 52-155 (575)
89 PF00209 SNF: Sodium:neurotran 95.4 4 8.7E-05 42.4 28.3 71 44-114 5-80 (523)
90 PF01235 Na_Ala_symp: Sodium:a 94.1 7 0.00015 38.9 22.8 88 38-126 13-110 (416)
91 PRK15433 branched-chain amino 94.0 7.5 0.00016 39.0 28.8 329 44-417 8-355 (439)
92 TIGR00796 livcs branched-chain 92.6 1.8 3.9E-05 42.6 12.0 78 72-149 221-299 (378)
93 COG4145 PanF Na+/panthothenate 91.6 14 0.0003 35.9 26.3 368 40-449 37-440 (473)
94 TIGR01197 nramp NRAMP (natural 90.8 19 0.0004 35.8 26.3 89 51-143 11-102 (390)
95 PF05525 Branch_AA_trans: Bran 90.2 22 0.00047 35.7 29.9 324 43-417 2-352 (427)
96 KOG3659 Sodium-neurotransmitte 89.9 26 0.00057 36.2 18.0 88 44-132 82-174 (629)
97 PF05525 Branch_AA_trans: Bran 89.6 13 0.00027 37.3 14.5 99 52-150 204-306 (427)
98 KOG2349 Na+:iodide/myo-inosito 85.3 13 0.00028 38.6 12.0 94 38-132 41-135 (585)
99 PRK15433 branched-chain amino 80.8 14 0.0003 37.1 10.0 82 68-149 227-309 (439)
100 PLN02351 cytochromes b561 fami 79.2 51 0.0011 30.1 12.1 96 241-349 52-147 (242)
101 COG1114 BrnQ Branched-chain am 77.3 14 0.0003 36.5 8.5 103 65-185 222-327 (431)
102 PLN02680 carbon-monoxide oxyge 77.0 48 0.001 30.1 11.3 96 241-348 48-143 (232)
103 KOG1289 Amino acid transporter 72.3 64 0.0014 33.2 12.0 48 102-149 322-369 (550)
104 KOG3660 Sodium-neurotransmitte 69.2 1.6E+02 0.0035 31.3 25.1 73 44-116 38-115 (629)
105 TIGR00909 2A0306 amino acid tr 63.6 1.6E+02 0.0036 29.3 16.3 45 105-149 264-308 (429)
106 KOG1619 Cytochrome b [Energy p 60.8 1.3E+02 0.0029 27.3 10.5 96 241-348 56-152 (245)
107 TIGR00906 2A0303 cationic amin 58.3 2.4E+02 0.0053 29.5 17.6 44 105-148 299-342 (557)
108 KOG1291 Mn2+ and Fe2+ transpor 57.9 2.2E+02 0.0047 28.9 12.9 43 104-146 88-130 (503)
109 PLN02810 carbon-monoxide oxyge 54.7 1.7E+02 0.0036 26.6 11.6 96 241-348 48-143 (231)
110 PF05805 L6_membrane: L6 membr 53.9 41 0.00088 29.6 6.0 64 393-456 45-118 (195)
111 PF11990 DUF3487: Protein of u 53.5 1.2E+02 0.0026 24.5 8.7 66 41-107 18-84 (121)
112 TIGR00907 2A0304 amino acid pe 49.7 3E+02 0.0065 28.1 15.4 45 105-149 289-334 (482)
113 TIGR03750 conj_TIGR03750 conju 48.7 1.4E+02 0.0029 23.8 9.2 67 41-107 15-81 (111)
114 TIGR03810 arg_ornith_anti argi 44.9 2.5E+02 0.0055 28.5 11.3 44 106-149 265-308 (468)
115 KOG1287 Amino acid transporter 44.3 1.6E+02 0.0035 30.0 9.2 38 108-146 276-313 (479)
116 PF13520 AA_permease_2: Amino 42.5 2.5E+02 0.0055 27.9 10.8 43 107-149 260-302 (426)
117 COG5249 RER1 Golgi protein inv 41.6 67 0.0014 26.5 5.0 62 45-117 118-179 (180)
118 PF03169 OPT: OPT oligopeptide 39.1 1.3E+02 0.0028 32.1 8.3 60 56-116 365-426 (624)
119 COG1115 AlsT Na+/alanine sympo 38.4 4.4E+02 0.0094 26.7 24.0 159 39-218 58-228 (452)
120 cd08762 Cyt_b561_CYBASC3 Verte 37.6 2.8E+02 0.006 24.2 11.4 69 272-348 66-134 (179)
121 PHA03048 IMV membrane protein; 37.6 1.4E+02 0.003 22.5 5.6 60 247-308 15-74 (93)
122 PRK10263 DNA translocase FtsK; 37.3 7.4E+02 0.016 29.0 14.1 21 280-300 26-46 (1355)
123 PF10716 NdhL: NADH dehydrogen 34.9 1.1E+02 0.0025 22.5 4.8 45 388-433 11-57 (81)
124 TIGR00905 2A0302 transporter, 33.5 3.4E+02 0.0074 27.6 10.2 43 107-149 270-312 (473)
125 TIGR00930 2a30 K-Cl cotranspor 33.0 7.7E+02 0.017 27.9 16.4 31 119-149 386-416 (953)
126 PF02028 BCCT: BCCT family tra 32.8 5.7E+02 0.012 26.3 27.9 27 39-65 70-96 (485)
127 PF03348 Serinc: Serine incorp 32.8 2.8E+02 0.006 28.1 9.0 40 372-411 113-157 (429)
128 PRK10644 arginine:agmatin anti 32.7 3.4E+02 0.0074 27.3 10.0 43 104-146 259-301 (445)
129 KOG4812 Golgi-associated prote 30.9 83 0.0018 28.5 4.3 82 375-460 160-257 (262)
130 PRK11387 S-methylmethionine tr 29.9 4.4E+02 0.0095 26.8 10.3 46 104-149 274-319 (471)
131 PF07857 DUF1632: CEO family ( 29.8 2.4E+02 0.0051 26.2 7.3 16 77-92 184-199 (254)
132 KOG2592 Tumor differentially e 29.7 4.2E+02 0.009 26.2 9.0 32 372-403 115-151 (426)
133 cd08766 Cyt_b561_ACYB-1_like P 29.6 3.4E+02 0.0073 22.7 8.2 74 267-348 31-104 (144)
134 PRK10655 potE putrescine trans 29.0 5.4E+02 0.012 25.7 10.7 44 105-148 258-301 (438)
135 PRK11021 putative transporter; 28.8 4.3E+02 0.0094 26.2 9.9 44 105-148 246-289 (410)
136 PF05915 DUF872: Eukaryotic pr 28.6 3.1E+02 0.0067 22.0 8.8 67 43-110 38-112 (115)
137 PF07954 DUF1689: Protein of u 28.6 1.5E+02 0.0033 25.0 5.4 59 398-456 35-94 (152)
138 PF07330 DUF1467: Protein of u 28.3 87 0.0019 23.5 3.5 48 20-75 29-76 (85)
139 cd08765 Cyt_b561_CYBRD1 Verteb 28.0 3.7E+02 0.0081 22.7 7.8 68 273-348 44-111 (153)
140 COG1292 BetT Choline-glycine b 27.6 2.7E+02 0.0059 28.8 7.8 100 39-138 83-208 (537)
141 PHA02680 ORF090 IMV phosphoryl 27.5 2.7E+02 0.0058 20.9 5.9 57 248-305 16-73 (91)
142 PF14256 YwiC: YwiC-like prote 25.0 3.8E+02 0.0083 21.9 8.7 34 386-421 20-53 (129)
143 PF13491 DUF4117: Domain of un 24.8 4.3E+02 0.0092 22.3 11.9 25 274-298 2-26 (171)
144 PHA03048 IMV membrane protein; 23.9 3.2E+02 0.007 20.6 6.3 54 399-452 13-68 (93)
145 PHA02680 ORF090 IMV phosphoryl 23.7 3.2E+02 0.007 20.5 6.0 56 397-452 11-70 (91)
146 PRK10582 cytochrome o ubiquino 23.6 3.7E+02 0.0081 21.2 8.7 44 405-452 55-98 (109)
147 PF00324 AA_permease: Amino ac 23.1 78 0.0017 32.3 3.3 45 106-150 275-319 (478)
148 PF05781 MRVI1: MRVI1 protein; 23.0 2.8E+02 0.006 28.6 6.9 37 64-101 472-508 (538)
149 KOG2174 Leptin receptor gene-r 20.9 3.2E+02 0.0069 22.1 5.4 31 46-76 65-95 (131)
150 PF05473 Herpes_UL45: UL45 pro 20.8 3.3E+02 0.0071 24.2 6.3 30 4-33 3-32 (200)
151 COG4709 Predicted membrane pro 20.2 6E+02 0.013 22.3 7.5 55 42-100 74-129 (195)
152 KOG1305 Amino acid transporter 20.0 7.5E+02 0.016 24.8 9.4 134 307-447 271-406 (411)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2e-56 Score=449.88 Aligned_cols=399 Identities=21% Similarity=0.321 Sum_probs=314.7
Q ss_pred CCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhHHH
Q 012508 42 NGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKV 121 (462)
Q Consensus 42 ~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~~ 121 (462)
+..+..++++|++|+++|+|+|+||++|+++||+.|++++++++.++.|+.+++.++.++++..+|+|++++++||++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhH
Q 012508 122 LLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSA 201 (462)
Q Consensus 122 ~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 201 (462)
++++++.+.++|+|++|+++++|.++.+++.... +++.+.. ...+ ....+.++++++|++++|++++++++|.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-----~~~~~~~-~~~r-~~~~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNA-----PDFLKQK-SGNR-LLTSLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----cchhhhc-cCcE-EeeeehhhhHhhhcccccchHHHHHHHH
Confidence 9999999999999999999999999876653110 1111111 1122 2223445567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCcc--C--CCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC--ch
Q 012508 202 LSVALAVAFVVITVGISIVKLISGGLGMPRI--L--PDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST--HI 275 (462)
Q Consensus 202 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~--~~ 275 (462)
+++.+.+...+.+++.+.+.....+.+.... + ++...++...+.+.++|+++|||.||.+++++++|||||+ |+
T Consensus 211 i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~ 290 (467)
T PTZ00206 211 IAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKF 290 (467)
T ss_pred HHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHH
Confidence 9985333333333333332211111111000 0 1111122234578899999999999999999999999866 88
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 012508 276 KGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGL 355 (462)
Q Consensus 276 ~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 355 (462)
.++...++.+++++|..+|++||+.||++++++++.|+++.. +....+.++...+.++.+||++.+|+|+.+++.
T Consensus 291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-----~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~ 365 (467)
T PTZ00206 291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-----EPAIMVGFVGVLVKLFVSYALLGMACRNALYDV 365 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-----CchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 899999999999999999999999999999999999995321 456678888899999999999999999999988
Q ss_pred cCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHh---cCccccchhhHHHH
Q 012508 356 LFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRD---RHNIATKKDKILCI 432 (462)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~---~~~~~~~~~~~~~~ 432 (462)
+.++.++ .+.+++...+..+.+.++++|+++|+++.+++++|++++..++|++|+++|++. .+++..+++++.++
T Consensus 366 ~~~~~~~--~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~ 443 (467)
T PTZ00206 366 IGWDARK--VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTY 443 (467)
T ss_pred hCCCccc--CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHH
Confidence 6443322 222333333445556778999999999999999999999999999999999983 22222344567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012508 433 FMIVLAVFSNVVAIYSDAFALF 454 (462)
Q Consensus 433 ~~~~~g~~~~v~g~~~si~~i~ 454 (462)
+++++|+++.+.|||+++++.+
T Consensus 444 ~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 444 VVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHhheEEecchhHhhHHh
Confidence 9999999999999999999876
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-54 Score=413.86 Aligned_cols=386 Identities=22% Similarity=0.334 Sum_probs=320.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCcHHHHHH
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA------GKSVSYGGLMG 112 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~------~~~~sy~~l~~ 112 (462)
+.++..|..|+..|+.++++|+|+|++|+||+++||+.|.+..++++.++.|+++.+++|.++ ....+|++.++
T Consensus 42 ~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 42 DREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred cCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 345679999999999999999999999999999999999999999999999999999999863 23457777766
Q ss_pred HH----------hChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHH
Q 012508 113 EA----------FGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLG 182 (462)
Q Consensus 113 ~~----------~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (462)
.+ +||++|.++++.++++++|.|++|++++++++.++.+.. .+..++.+.++ .+.+.
T Consensus 122 ~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~-----------~~~~~s~~~~i--~~~~~ 188 (449)
T KOG1304|consen 122 SAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH-----------SPGVLSVRLYI--LIQLP 188 (449)
T ss_pred HHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc-----------CCCCccHHHHH--HHHHH
Confidence 55 489999999999999999999999999999998876521 01112233333 33555
Q ss_pred HhhcccccccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhch
Q 012508 183 IFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNV 262 (462)
Q Consensus 183 ~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~ 262 (462)
..+|++++|+++.++.+|.++.++.++.++++ .++...+.. +..+.|.+ .++.++...+|+.+|||+|+.++
T Consensus 189 ~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii----~~y~~~~~~-~~~~~~~~---~~~~~~~lf~GtaifafEGig~V 260 (449)
T KOG1304|consen 189 PLLLLNLIRNLKILSPFSLFANVFILVGLAII----MYYLVQDLP-PTSDLPAV---TGWSGLPLFFGTAIFAFEGIGMV 260 (449)
T ss_pred HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHH----HHHHHhccC-Cccccccc---cchhhhHHHHHHHHHHhccceEE
Confidence 77888999999888888888886444433333 333333333 22233333 44667788899999999999999
Q ss_pred HHHHHhccCCCchh---hHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 012508 263 HSIDNELEDSTHIK---GVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLML 339 (462)
Q Consensus 263 ~~i~~~m~~~~~~~---~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~ 339 (462)
.|++++||+|++++ +++..++.+++++|..+|++||++|||++++.++.|+|+ +++.+.+++++++.++.
T Consensus 261 LPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-------~~l~~~Vkl~~ai~I~l 333 (449)
T KOG1304|consen 261 LPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-------EILSQTVKLLLAIAIFL 333 (449)
T ss_pred EehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-------cHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999997 48999999999999999
Q ss_pred HhhhhhhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhc
Q 012508 340 VFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDR 419 (462)
Q Consensus 340 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~ 419 (462)
++|+|++|..+.+++.+..+... +..+...+..|..+++.+..+|..+|+++.+++++|+++++.+.+++|++++++.+
T Consensus 334 s~pLQ~yv~~eIi~~~i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~ 412 (449)
T KOG1304|consen 334 TYPLQFYVPIEIIEPGIRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITF 412 (449)
T ss_pred cCchhhhhhHHHHHHhHHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHh
Confidence 99999999999999975433331 12233345678888999999999999999999999999999999999999999966
Q ss_pred Ccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012508 420 HNI---ATKKDKILCIFMIVLAVFSNVVAIYSDAFAL 453 (462)
Q Consensus 420 ~~~---~~~~~~~~~~~~~~~g~~~~v~g~~~si~~i 453 (462)
+.. ..+|+.+.+..++++|+++++.|||.+++++
T Consensus 413 ~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 413 YPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred cccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 542 3568889999999999999999999999874
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-51 Score=400.59 Aligned_cols=397 Identities=21% Similarity=0.311 Sum_probs=328.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCcHHHHH
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAG------KSVSYGGLM 111 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~------~~~sy~~l~ 111 (462)
..++++.|++++.++.++.++|.|+|+||||+++.||+.|++++++.++++.||..+|.+|.+.+ +.++|.|++
T Consensus 32 ~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 32 ITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999998743 345699999
Q ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccc
Q 012508 112 GEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFK 191 (462)
Q Consensus 112 ~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 191 (462)
+++||+++++++..++.+.++|+|+.|.+..+|++....++.+.+.. ....+.|.++ ..++.+|++++|
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---------~l~~~~f~ii--f~~i~~~~s~lp 180 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN---------SLDKQYFIII--FGLIVLPLSQLP 180 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---------cccceehhhh--HHHHHHHHHHCC
Confidence 99999888999999999999999999999999999888765433321 1123344433 334778999999
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccC
Q 012508 192 RIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELED 271 (462)
Q Consensus 192 ~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 271 (462)
+++.++++|..+..+++.+..+.++........... .....+... +....++++|++.|+|.+|.++|+++++||+
T Consensus 181 ~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~-~~~~~~~~~---~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~ 256 (437)
T KOG1303|consen 181 NFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCA-PSGGYLDLG---TIPTVFTALGIIAFAYGGHAVLPEIQHTMKS 256 (437)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCC-cccCcccCC---CCcchhhhhhheeeeecCCeeeeehHhhcCC
Confidence 999999999999998988888777666543321111 111112111 1111179999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 012508 272 STHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLN 351 (462)
Q Consensus 272 ~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 351 (462)
|.+++|.+..++.+++++|+.+++.||++|||.++++++.|+.+. .++...+++++.++++.+++.+..|+.+.
T Consensus 257 p~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p------~~~~~~ani~i~~h~i~s~~i~a~pl~~~ 330 (437)
T KOG1303|consen 257 PPKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPP------TWLIALANILIVLHLIGSYQIYAQPLFDV 330 (437)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCc------hhHHHHHHHHHHHHHhhhhhhhhcchHHH
Confidence 999999999999999999999999999999999999999999621 58999999999999999999999999999
Q ss_pred HhhhcCCCCCCCC--CCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCccccchhhH
Q 012508 352 LDGLLFPSARPLG--SSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKI 429 (462)
Q Consensus 352 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~~~~~~~~~ 429 (462)
+|++...++++.. ...+|. ..|..+.+.+.++|..+|.|+++.+++|++....+++++|+++|++.++.++...+..
T Consensus 331 ~E~~~~~~~~~~~~~~~~~R~-~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~ 409 (437)
T KOG1303|consen 331 VEKLIGVKHPDFKKRSLVLRL-LVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWL 409 (437)
T ss_pred HHHHhccCCccccccccceee-ehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 9998754333111 222455 4577888999999999999999999999999999999999999999766544444555
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 012508 430 LCIFM-IVLAVFSNVVAIYSDAFALFKK 456 (462)
Q Consensus 430 ~~~~~-~~~g~~~~v~g~~~si~~i~~~ 456 (462)
.++.+ +++|++.++....+++++++.+
T Consensus 410 ~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 410 LNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 66666 7999999999999999988753
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.6e-52 Score=419.98 Aligned_cols=389 Identities=32% Similarity=0.506 Sum_probs=320.5
Q ss_pred CCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCcHHHHHHHHhCh
Q 012508 42 NGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA----GKSVSYGGLMGEAFGK 117 (462)
Q Consensus 42 ~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~----~~~~sy~~l~~~~~Gk 117 (462)
||+|.++++++++|+++|+|+|++|++|+++||+.|++++++++.++.+|.+++.|+.++ ++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 579999999999999999999999999999999999999999999999999999999875 5789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchh
Q 012508 118 WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLS 197 (462)
Q Consensus 118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 197 (462)
++++++++++.+.++|.|++|++..+|++.++++....+ ....+.++ .++..++++|++++|++++++
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-----------~~~~~~~~-~~i~~~i~~pls~~~~l~~l~ 148 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-----------LFISRYVW-IIIFALIVLPLSFLKNLKSLR 148 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc-----------cccccccc-ccccccccccccccchhhHHH
Confidence 999999999999999999999999999998877642211 11122333 344566889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCCchh-
Q 012508 198 FTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIK- 276 (462)
Q Consensus 198 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~- 276 (462)
+.|.++.++.+..+.+.+ ........++..+.. .+......++.+++.++|+++|||.+|+++|++++|||+|++++
T Consensus 149 ~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~ 226 (409)
T PF01490_consen 149 YLSILGLFSIFYFIVIVV-IYIISYGPGEPSGVP-SPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKK 226 (409)
T ss_pred HHhhhhhhccceeeeeec-ceeeeeecccccccc-cccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccc
Confidence 999999953333212221 111111111111111 11122345678899999999999999999999999999999877
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 012508 277 --GVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDG 354 (462)
Q Consensus 277 --~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 354 (462)
++...++.+++++|..+|.+||++||+++++|++.|++++ ++...++++++.++++.++|++.+|.++.+++
T Consensus 227 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~------~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~ 300 (409)
T PF01490_consen 227 MKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND------DVLIIIARILLVISLLLSYPLQLFPARNSLEN 300 (409)
T ss_pred cceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc------ccccccccccchhhhhhccccccchhHhhhhh
Confidence 9999999999999999999999999999999999999987 46788999999999999999999999999999
Q ss_pred hcCCC-------CCCCCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCccccchh
Q 012508 355 LLFPS-------ARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKD 427 (462)
Q Consensus 355 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~~~~~~~ 427 (462)
.+.++ ..+...++.++...|+.+..++.++|..+||++++++++|++++..+.|++|+++|++.+++++.+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~ 380 (409)
T PF01490_consen 301 LLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFG 380 (409)
T ss_pred heeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccc
Confidence 98653 11122334456667888899999999999999999999999999999999999999997765433222
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHH
Q 012508 428 -----KILCIFMIVLAVFSNVVAIYSDA 450 (462)
Q Consensus 428 -----~~~~~~~~~~g~~~~v~g~~~si 450 (462)
....+.++++|+++++.|+|.++
T Consensus 381 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 381 WWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred eeehhhccceEEEEEeeehhHHhHHHHc
Confidence 24577889999999999999876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.4e-46 Score=376.44 Aligned_cols=385 Identities=14% Similarity=0.125 Sum_probs=304.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cC--C-------Cc
Q 012508 40 EVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA----GK--S-------VS 106 (462)
Q Consensus 40 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~----~~--~-------~s 106 (462)
..++.+..++.+++.++.+|+|+|+||++|+++||++|++.+++.++++.||.+++.+++.+ ++ . .+
T Consensus 42 ~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 42 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred ccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999986432 11 1 26
Q ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhc
Q 012508 107 YGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSP 186 (462)
Q Consensus 107 y~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 186 (462)
|.|+++..+||+++.+..+...+++++.|+.|++.+++.+..+- +. .+.+.+..+ ..++++|
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~---------------~~-~~~~~~~~i--~~~v~~~ 183 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN---------------DN-LDKRTWTYI--FGACCAT 183 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC---------------CC-cCCCeEEee--hHHHHHH
Confidence 78999999999999999999999999999999999887764321 11 122333322 2335567
Q ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHH
Q 012508 187 LACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSID 266 (462)
Q Consensus 187 l~~~~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~ 266 (462)
++++|++++++++|.+++.+++...+.+++..... +..+. .+. +...++..++.++++++|+|++|..+|+++
T Consensus 184 ~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~---~~~~~---~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~ 256 (473)
T PLN03074 184 TVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSH---GQVEG---VKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIM 256 (473)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCC---CCC-CCchhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 88999999999999999865554433333222221 11111 111 122456677888888999999999999999
Q ss_pred HhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchh--HHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhh
Q 012508 267 NELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLD--DVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVI 344 (462)
Q Consensus 267 ~~m~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~--~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 344 (462)
+|||||+++++....+...++.+|+.+|+.||++|||++++ +.+.|+|++ ....++++++.++.+.+|+++
T Consensus 257 ~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-------~~~~~~~~~~~i~~~~sy~l~ 329 (473)
T PLN03074 257 HAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-------GWRDAAVILMLIHQFITFGFA 329 (473)
T ss_pred HhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc-------hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764 556678753 246789999999999999999
Q ss_pred hhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCcc--
Q 012508 345 FYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNI-- 422 (462)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~~-- 422 (462)
++|+.+..|+....+.. .....+...|..+++.++++|..+|+|+.+++++|+++++.+++++|+++|++.++++
T Consensus 330 ~~p~~~~~e~~~~~~~~---k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~ 406 (473)
T PLN03074 330 CTPLYFVWEKAIGVHDT---KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASA 406 (473)
T ss_pred HhhHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 99999999887533211 2223345678899999999999999999999999999999999999999999844432
Q ss_pred -----------ccch--hhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCC
Q 012508 423 -----------ATKK--DKILCIFMIVL-AVFSNVVAIYSDAFALFKKNAS 459 (462)
Q Consensus 423 -----------~~~~--~~~~~~~~~~~-g~~~~v~g~~~si~~i~~~~~~ 459 (462)
.++| ..+.++.++++ |+++.+.|+|+|++++++++++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~ 457 (473)
T PLN03074 407 RQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT 457 (473)
T ss_pred hhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence 1222 35788888875 6666799999999999999876
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-46 Score=360.96 Aligned_cols=405 Identities=38% Similarity=0.603 Sum_probs=335.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhHH
Q 012508 41 VNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGK 120 (462)
Q Consensus 41 ~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~ 120 (462)
+++.|.+.+++++.|+++|+|+|++|++|++.|++.|++++.+++.++.++.+++.++..+.+..+|+++++..+|+.++
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g~ 82 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLGK 82 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCce
Confidence 56789999999999999999999999999999999999999999999999999999999988888999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhh
Q 012508 121 VLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTS 200 (462)
Q Consensus 121 ~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 200 (462)
....+.......| |++|++.++|.++.+... ...+++.+.+ +..+.+.+++..+.++.|+++.|++.++++.|
T Consensus 83 ~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~-----~~~~~~~~~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS 155 (411)
T KOG1305|consen 83 VDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRS-----LFLDEEGGSH-YLDRNFLILLVLLFIILPLSLLKNLDSLKYTS 155 (411)
T ss_pred eeehhhHHhhhcc-ceEEEEEEccccchhhhh-----cccccccccc-cccceeEeehHHHHHHHHHHHHHhhhhHHHHH
Confidence 6666666666666 699999999999854332 1112222222 34454434566777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC--chhhH
Q 012508 201 ALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST--HIKGV 278 (462)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~--~~~~~ 278 (462)
.+++...+....+++..... .....+...+..++...+++++.++++++|+|.||++..++++|||||+ +++++
T Consensus 156 ~~s~~~~~~fv~~vv~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v 231 (411)
T KOG1305|consen 156 ALSLASVVYFVVLVVYKYFQ----GPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRV 231 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHH
Confidence 99996444444443333222 1111111111222223347889999999999999999999999999999 69999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCC
Q 012508 279 VRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFP 358 (462)
Q Consensus 279 ~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~ 358 (462)
...+...++.+|..+|.+||+.|||.+.+|++.|+++.............++..+.++++..+|+..+|+|..+++..++
T Consensus 232 ~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~ 311 (411)
T KOG1305|consen 232 SNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFP 311 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcc
Confidence 99999999999999999999999999999999999988644333345689999999999999999999999999999887
Q ss_pred CCCC-CCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCccccchhhHHHHHHHHH
Q 012508 359 SARP-LGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIATKKDKILCIFMIVL 437 (462)
Q Consensus 359 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (462)
.+.+ .+.+++|+.+.+..+.......|+++|++.++++++||+++..++|++|+++|++..|+ +.+++...+...++
T Consensus 312 ~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~ 389 (411)
T KOG1305|consen 312 YQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLIL 389 (411)
T ss_pred cCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHH
Confidence 7653 34567888888999999999999999999999999999999999999999999997776 67788889999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 012508 438 AVFSNVVAIYSDAFALFKKNA 458 (462)
Q Consensus 438 g~~~~v~g~~~si~~i~~~~~ 458 (462)
++...+.|+...+.+++.+.+
T Consensus 390 ~~~~~i~~~~~~i~~~~~~~~ 410 (411)
T KOG1305|consen 390 GVLLSIIGVAVMIYDLLAKNA 410 (411)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999987653
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1e-40 Score=301.38 Aligned_cols=391 Identities=17% Similarity=0.234 Sum_probs=321.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCcHHHH
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAG--------KSVSYGGL 110 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--------~~~sy~~l 110 (462)
+.+.|++.+|+..|..|++=|-=+++||+|...+||+ ++..++.++.+..||..+|++|...+ .+.+|-++
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 4457899999999999999999999999999999987 88899999999999999999998653 36899999
Q ss_pred HHHHhCh-hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccc
Q 012508 111 MGEAFGK-WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLAC 189 (462)
Q Consensus 111 ~~~~~Gk-~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 189 (462)
+..++++ .|++.+.+.+.+.+..+|+.|.+..+|.+.+-+|+. ....+.|++ + +-..++|..+
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~--------------svd~~sWm~-i-~~a~LLpc~F 254 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL--------------SVDKASWMM-I-TSASLLPCSF 254 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC--------------Cccccchhh-h-hhHHHhhhHH
Confidence 9998874 466899999999999999999999999997665531 112344443 3 3347789999
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhc
Q 012508 190 FKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNEL 269 (462)
Q Consensus 190 ~~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 269 (462)
+|+++-.+.+|.+..+.-++.=++++.++.-+.-...++. +.-.-+.-++..++|+++|+|..|..+|.+...|
T Consensus 255 Lk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wsk------v~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM 328 (524)
T KOG4303|consen 255 LKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSK------VTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM 328 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccee------EEEEEEcccCceEEEEEEEeeeceeecccccccc
Confidence 9887777777766664434333444444433332222221 1112344556678999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 012508 270 EDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLR 349 (462)
Q Consensus 270 ~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~ 349 (462)
+||++++..+.++-+...++-..+|..+|++|+|.++..|++|+|+. .+..+++++.++..+.+||+.++++.
T Consensus 329 ~~ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q-------sfk~~VN~fLV~KALLSYPLPfyAAv 401 (524)
T KOG4303|consen 329 KNPSQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ-------SFKILVNLFLVVKALLSYPLPFYAAV 401 (524)
T ss_pred CChhHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc-------chhhhhhHHHHHHHHHcCCchHHHHH
Confidence 99999999999999999999999999999999999999999999974 47789999999999999999999999
Q ss_pred HHHhhhcCCCCCCCC--------CCCcee-hhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhcC
Q 012508 350 LNLDGLLFPSARPLG--------SSNTRF-AFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRH 420 (462)
Q Consensus 350 ~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~ 420 (462)
+.+|+-++..-++.. .+.+.| +..|+.+++.+++.|+++|.+..+++++|++.+..++|++|++||++.++
T Consensus 402 elLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~ 481 (524)
T KOG4303|consen 402 ELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKE 481 (524)
T ss_pred HHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHH
Confidence 999998865433211 112223 34678888999999999999999999999999999999999999999998
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012508 421 NIATKKDKILCIFMIVLAVFSNVVAIYSDAFALFKKNAS 459 (462)
Q Consensus 421 ~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~i~~~~~~ 459 (462)
+...+.++.+...++++|+.+.+.|.|.|..++++.+..
T Consensus 482 ~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 482 KTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred HhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence 887888899999999999999999999999999987654
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=275.26 Aligned_cols=395 Identities=20% Similarity=0.228 Sum_probs=296.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--cHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSV--SYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~--sy~~l~~~~~G 116 (462)
..+.+.+..++++++.++++|+|+|++|++++..|++.+++++++.+.++.++.+++.|+..+.+.. +|.+++++.+|
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G 83 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLG 83 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhC
Confidence 4567789999999999999999999999999999999999999999999999999999999886655 99999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
|+++++.++.+.+.+++.+.+|.+..++.+++++++..+.. + ..|.....+ ...++.++++.++...+
T Consensus 84 ~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~--------~---~~r~~~~li-f~~~~~~l~~~~~~~~l 151 (415)
T COG0814 84 KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN--------P---LPRKLGSLI-FALVLAFLSWLGTLAVL 151 (415)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC--------C---cchHHHHHH-HHHHHHHHHHhchhHHH
Confidence 99999999999999999999999999999987766422211 0 234444333 44466779999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCCc--
Q 012508 197 SFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTH-- 274 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~-- 274 (462)
++.+.+... .+++.++.+ .+.....+.+.....|..+ ...+..+..++|++.|||.||+++|++++|||++++
T Consensus 152 k~ts~l~~~-~v~~~~~l~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~ 226 (415)
T COG0814 152 KITSLLVFG-KVIYLVLLV---VYLIPHWNPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKA 226 (415)
T ss_pred HHHHHHHHH-HHHHHHHHH---HHHhcccCHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHH
Confidence 999998885 333333322 2222222211112222221 255677889999999999999999999999998883
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCC-------CchhHHHHHHHHHHHHHHHHHhhhhhhH
Q 012508 275 IKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGI-------PFGSVLSDVVRVSYAAHLMLVFPVIFYP 347 (462)
Q Consensus 275 ~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 347 (462)
.+|+..++..+..++|..++.++|..+|+.+.++++++.+++... ...+......+++..+++..++--....
T Consensus 227 ~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg 306 (415)
T COG0814 227 VRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLG 306 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhh
Confidence 999999999999999999999999999999999999999776310 0012234444555555555554444455
Q ss_pred HHHHHhhhcCCCCCC---CCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCcccc
Q 012508 348 LRLNLDGLLFPSARP---LGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHNIAT 424 (462)
Q Consensus 348 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~~~~ 424 (462)
.++..++...+++.+ .....+++....++........+...+....+++.+|+.....+.++.|...+.+....+..
T Consensus 307 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~ 386 (415)
T COG0814 307 LFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVY 386 (415)
T ss_pred HHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeec
Confidence 555555554432211 11122334445566667777888888999999999999999999999999998885544333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q 012508 425 KKDKILCIFMIVLAVFSNVVAIYSDA 450 (462)
Q Consensus 425 ~~~~~~~~~~~~~g~~~~v~g~~~si 450 (462)
+.++.....++++|+..++...+...
T Consensus 387 ~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 387 GGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 33335778889999988887777654
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=2.9e-23 Score=204.15 Aligned_cols=372 Identities=18% Similarity=0.180 Sum_probs=257.0
Q ss_pred CCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHhChhHH
Q 012508 42 NGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAG-KSVSYGGLMGEAFGKWGK 120 (462)
Q Consensus 42 ~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~sy~~l~~~~~Gk~~~ 120 (462)
++.+.+++++.+.++++|+|+|+||.+....|++++++.+++++.++.++..++.|...+. +..+|.+++++.+||+++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 3578899999999999999999999999999999999999999999999999999988654 688999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhh
Q 012508 121 VLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTS 200 (462)
Q Consensus 121 ~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 200 (462)
++..+...+..++.+++|....++.+.+++++..+ .. . .+.... +...++...+.... .+....++
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~----------~~-~-~~~~~~-~~f~~i~~~iv~~g-~~~v~~~n 146 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG----------TD-L-SPWLSS-LLFTIIFGGIVYFG-TKAVDRIN 146 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----------CC-C-cHHHHH-HHHHHHHHHHHHhh-HHHHHHHH
Confidence 99999999999999999999999999776643111 00 0 111111 11111112122222 23344444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCC-CchhhHH
Q 012508 201 ALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDS-THIKGVV 279 (462)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~-~~~~~~~ 279 (462)
.+-+...+......++..+ .+++.++.....+...++.....++|+..+||..|+.+|++.+.+++. +|.+|.+
T Consensus 147 ~~lv~~~i~~~~~l~~~~~-----p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai 221 (394)
T PF03222_consen 147 RVLVFGMIISFIILVVYLI-----PHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAI 221 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh-----hhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHH
Confidence 3333222222222221111 112222221111123567778899999999999999999999999854 4899999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------hcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012508 280 RTSLALCSTVYIMTSIFGFL-----------LFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPL 348 (462)
Q Consensus 280 ~~s~~i~~~~y~~~g~~gy~-----------~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 348 (462)
..+..+..++|+..-...-. .-+++. +.+...+.+..+ +.+...+.+++-.+++.+||--....+
T Consensus 222 ~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~---s~~i~~~~~~fa~~Ai~TSFlGv~lgl 297 (394)
T PF03222_consen 222 IIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV-SALVSALANVSG---SPWISILGSIFAFFAIATSFLGVYLGL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh-HHHHHHHHhhcC---CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888865333221 111111 222222211111 146778889999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCC-HHHHHHhhchhhhhHHHHHhhhHHHHHhcCcccc---
Q 012508 349 RLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPS-IWDAFQFTGATAAVCLGFIFPAAITLRDRHNIAT--- 424 (462)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~~~~--- 424 (462)
+|.+.+.+..+++ ...|. ....+...+++++|...|+ |...+++.| .+..++..++|.++.+|.|+++..
T Consensus 298 ~d~l~d~~k~~~~----~~~r~-~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~ 371 (394)
T PF03222_consen 298 FDFLADLFKLKNN----SSGRL-KTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPY 371 (394)
T ss_pred HHHHHHHHcCCcc----ccchH-HHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCe
Confidence 9999998755222 22232 2345667788999998886 889999999 888899999999999996554321
Q ss_pred --chhhHHHHHHHHHHHHHH
Q 012508 425 --KKDKILCIFMIVLAVFSN 442 (462)
Q Consensus 425 --~~~~~~~~~~~~~g~~~~ 442 (462)
...+.....++++|++..
T Consensus 372 ~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 372 RVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred EEeCcHHHHHHHHHHHHHHH
Confidence 123556666666666544
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.93 E-value=6e-23 Score=199.76 Aligned_cols=379 Identities=17% Similarity=0.164 Sum_probs=261.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhCh
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFGK 117 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk 117 (462)
.++++.+...+++.+.++++|+|+|+||.+.++.|++++++++++++..+.+|..++.|+..+ ++..++.+++++.+||
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~ 85 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGK 85 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCh
Confidence 346679999999999999999999999999999999999999999999999999999999876 5567899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchh
Q 012508 118 WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLS 197 (462)
Q Consensus 118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 197 (462)
+|+.+..++..+..++.+++|+.-.+|.+++.+++. . .+ -.++...+...++.-.+.+. ..+...
T Consensus 86 ~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~-~~------------i~~~~~~llF~~~~~~iv~~-gt~~vd 150 (414)
T PRK10483 86 GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-S-LN------------VPARAAGFGFALLVAFVVWL-STKAVS 150 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-C-CC------------CcHHHHHHHHHHHHHHHHHh-hhhHHH
Confidence 999999999999999999999999999997766430 0 00 01111111111122222222 245555
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCC-CCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCC-Cch
Q 012508 198 FTSALSVALAVAFVVITVGISIVKLISGGLGMPRILP-DVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDS-THI 275 (462)
Q Consensus 198 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~-~~~ 275 (462)
+++.+-+...++..+..+.. ..+ +.+..+... .......+..+..+++++.++|..|+++|++.+++++. +|.
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~----l~~-~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~ki 225 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGS----LLG-HVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTI 225 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHh-hcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHH
Confidence 55544432222222211111 111 122111111 11222234557799999999999999999999999854 589
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhh
Q 012508 276 KGVVRTSLALCSTVYIMTSIFGFLL-----------FGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVI 344 (462)
Q Consensus 276 ~~~~~~s~~i~~~~y~~~g~~gy~~-----------fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 344 (462)
+|++..+..+..++|+..-...... -|++. +..+..+.+..+ +..+..+.+++..+++..||--.
T Consensus 226 r~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~---~~~i~~~~~~Fa~~Ai~TSFlGv 301 (414)
T PRK10483 226 VKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLN---SRSLDLLLVVFSNFAVASSFLGV 301 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998743333322 22222 222222222111 14566788899999999999999
Q ss_pred hhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCC-HHHHHHhhchhhhhHHHHHhhhHHHHHhcCc-c
Q 012508 345 FYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPS-IWDAFQFTGATAAVCLGFIFPAAITLRDRHN-I 422 (462)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~-~ 422 (462)
...++|.+.+.+..+++ ...|.. ...+.+++++++|...|+ |...+++.|.. ..++..++|.++..+.|++ .
T Consensus 302 ~LGL~d~l~D~~k~~~~----~~~r~~-~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~ 375 (414)
T PRK10483 302 TLGLFDYLADLFGFDDS----AMGRFK-TALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFG 375 (414)
T ss_pred HHHHHHHHHHHhCCCCc----ccccee-eehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC
Confidence 99999999998755433 112222 234567899999999997 99999999977 5677789999999996654 1
Q ss_pred cc----chhhHHHHHHHHHHHHHHHHHHH
Q 012508 423 AT----KKDKILCIFMIVLAVFSNVVAIY 447 (462)
Q Consensus 423 ~~----~~~~~~~~~~~~~g~~~~v~g~~ 447 (462)
.+ ...|.....++++|+...+.-..
T Consensus 376 ~~~y~v~Gg~~~l~~~~~~g~~~i~~~i~ 404 (414)
T PRK10483 376 SPKFRVWGGKPMIVLILLFGVGNALVHIL 404 (414)
T ss_pred CCCceecCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 22345556677777766655443
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=1.4e-22 Score=196.90 Aligned_cols=379 Identities=17% Similarity=0.139 Sum_probs=259.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHhCh
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAG-KSVSYGGLMGEAFGK 117 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~sy~~l~~~~~Gk 117 (462)
+.++|.+...+++.+.++++|+|+|+||.+.++.|+.++++++++++..+.+|..++.|+..+. +..++..++++.+||
T Consensus 4 ~~~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~ 83 (415)
T PRK09664 4 QAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGN 83 (415)
T ss_pred chhhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCh
Confidence 3445568888999999999999999999999999999999999999999999999999998765 567899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchh
Q 012508 118 WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLS 197 (462)
Q Consensus 118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 197 (462)
+|+.+..++..+..++.+++|+.-.++.+.+.+++.. +.. ..++... +...++.-++.+.. .+...
T Consensus 84 ~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----------~~~--i~~~~~~-llF~~~~~~~v~~g-t~~vd 149 (415)
T PRK09664 84 TWNIISGITVAFVLYILTYAYISANGAIISETISMNL----------GYH--ANPRIVG-ICTAIFVASVLWIS-SLAAS 149 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----------cCC--CcHHHHH-HHHHHHHHHHHHhc-hhHHH
Confidence 9999999999999999999999999999977654210 000 0111111 11221222222222 35555
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccC--CCCCcc-hhhhHHHHhhhhHhHHHhhhhchHHHHHhccCC-C
Q 012508 198 FTSALSVALAVAFVVITVGISIVKLISGGLGMPRIL--PDVTDF-TSLINLFTVVPVLVTAFICHYNVHSIDNELEDS-T 273 (462)
Q Consensus 198 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~-~ 273 (462)
+.+.+-....++..+..+.... .+.+..... +..... .....+..++|++.+||+.|+++|++.+.+++. +
T Consensus 150 ~~nr~l~~~~ii~f~~~~~~l~-----~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~ 224 (415)
T PRK09664 150 RITSLFLGLKIISFVIVFGSFF-----FQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKD 224 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----hcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHH
Confidence 5554433222222222111111 111111111 111100 113457789999999999999999999999855 4
Q ss_pred chhhHHHHHHHHHHHHHHHH--HHHHH---------HhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhh
Q 012508 274 HIKGVVRTSLALCSTVYIMT--SIFGF---------LLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFP 342 (462)
Q Consensus 274 ~~~~~~~~s~~i~~~~y~~~--g~~gy---------~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 342 (462)
|.+|.+..+..+..++|..- ++.|- ...|++... ....+.++ ..+.+...+.+++..+++..||-
T Consensus 225 ~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~-l~~s~~~~---~~~~~i~~~~~~Fa~~Ai~TSFl 300 (415)
T PRK09664 225 KLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDS-LVKSFLGT---KQHGIIEFCLLVFSNLAVASSFF 300 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchH-HHHHHHhh---ccChHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888654 33331 122333322 11111111 01256778888999999999999
Q ss_pred hhhhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCC-HHHHHHhhchhhhhHHHHHhhhHHHHHhcCc
Q 012508 343 VIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPS-IWDAFQFTGATAAVCLGFIFPAAITLRDRHN 421 (462)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~ 421 (462)
-....++|.+.+.+..++++ ..|... ..+.++++++.+...|+ |...+++.|.. ..++..++|+++-.|.|++
T Consensus 301 Gv~LGL~D~l~D~~~~~~~~----~~r~~~-~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 301 GVTLGLFDYLADLFKIDNSH----GGRFKT-VLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHHHhCCCCcc----ccceee-ehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 99999999999987554332 122221 24557899999999997 99999999996 5588889999999996654
Q ss_pred -cc----cchhhHHHHHHHHHHHHHHHHHH
Q 012508 422 -IA----TKKDKILCIFMIVLAVFSNVVAI 446 (462)
Q Consensus 422 -~~----~~~~~~~~~~~~~~g~~~~v~g~ 446 (462)
.. ....|......+++|++..+.-.
T Consensus 375 ~~~~~y~v~GG~~~l~~~~~~g~~ii~~~~ 404 (415)
T PRK09664 375 FPNQMFTVWGGNLIPAIVILFGITVILCWF 404 (415)
T ss_pred cCCCCceeeCCHHHHHHHHHHHHHHHHHHH
Confidence 11 12346777777788877765544
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.93 E-value=2.2e-23 Score=206.73 Aligned_cols=344 Identities=19% Similarity=0.210 Sum_probs=246.7
Q ss_pred HHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHhChhHHHHHHHHHH
Q 012508 50 VFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAG-KSVSYGGLMGEAFGKWGKVLLQLSVL 128 (462)
Q Consensus 50 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~sy~~l~~~~~Gk~~~~~~~~~~~ 128 (462)
++.++++++|+|+|++|.++.+.|...+++.+++.++++.++..++.|...+. +..++.+++++.+||++++++.+...
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999997654 57899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHHHHHHHH
Q 012508 129 INNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAV 208 (462)
Q Consensus 129 l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 208 (462)
+.++..+.+|.+..++.+..++++. .+... .+. ...+...+++.+ ...+..+..++++.+.+...+
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~----------~~~~~--~~~-~~~~~~~~v~~~-l~~~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEY----------FGFPW--SAR-AIVLIFTVLFGS-FVWLSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHh----------cCCCc--cHH-HHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHH
Confidence 9999999999999998886654421 11111 122 222222223333 445567888888877775444
Q ss_pred HHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhcc-CCCchhhHHHHHHHHHH
Q 012508 209 AFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELE-DSTHIKGVVRTSLALCS 287 (462)
Q Consensus 209 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~~~~~~~~~~~s~~i~~ 287 (462)
..++..++....+. +..+..|...+...+.++..+++...++|.+|.+++++.+|++ +++|.+|....+..+++
T Consensus 149 ~~l~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~ 223 (381)
T TIGR00837 149 IAFALVFSGLLPHV-----KGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIAL 223 (381)
T ss_pred HHHHHHHHHHHhhc-----cHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 44333332222221 1111122111113455778889999999999989999999997 54589999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHhhCC----------CCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcC
Q 012508 288 TVYIMTSIFGFLLFGDATLDDVLANF----------DADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLF 357 (462)
Q Consensus 288 ~~y~~~g~~gy~~fg~~~~~~il~n~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 357 (462)
++|..+........+.+.-.+...+. ....+ ..+...+..++..+.+..++.-.....++.+.+.+.
T Consensus 224 ~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~ 300 (381)
T TIGR00837 224 VLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLK---SSAIELALELFSNFALASSFLGVTLGLFDYLADLFK 300 (381)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998877766655432211111111 11001 134667888889999999999999999999888765
Q ss_pred CCCCCCCCCCceehhhHHHHHHHHHHHHHhcCCHH-HHHHhhchhhhhHHHHHhhhHHHHHhcCc
Q 012508 358 PSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIW-DAFQFTGATAAVCLGFIFPAAITLRDRHN 421 (462)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~ii~l~G~~~~~~l~~ilP~~~~~~~~~~ 421 (462)
.++++ .+|. ....+..+++.++|.+.|+.. ..++..| ++..++.+++|++++++.|++
T Consensus 301 ~~~~~----~~~~-~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 301 FDDSK----KGRF-KTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred CCccc----CCCc-hhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 43321 1233 335666788889999998754 9999999 778889999999999996654
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.92 E-value=3.1e-22 Score=195.78 Aligned_cols=372 Identities=18% Similarity=0.228 Sum_probs=255.8
Q ss_pred CcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHhChhHHHH
Q 012508 44 ASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAG-KSVSYGGLMGEAFGKWGKVL 122 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~sy~~l~~~~~Gk~~~~~ 122 (462)
.+...+++.+.++++|+|+|+||.+....|++++++++++++.++.|+..++.|+..+. +..++.+++++.+||+|+++
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 37889999999999999999999999999999999999999999999999999987654 45789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHH
Q 012508 123 LQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSAL 202 (462)
Q Consensus 123 ~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 202 (462)
..+...+..+..+.+|....++.+.+.+++ +.+.. .+..+..+.+...... ..+. ..+...+++.+
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~----------~~~~~-i~~~~~~l~F~~~~~~--iv~~-g~~~v~~~n~~ 148 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISD----------WTGIS-MSPTAGVLLFTLVAGG--VVCV-GTSSVDLFNRF 148 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHH----------hccCC-CChHHHHHHHHHHHHH--HHhc-cHHHHHHHHHH
Confidence 999999999999999999988887554432 11111 0111222222111111 1222 22444444433
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-chhhHHHH
Q 012508 203 SVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-HIKGVVRT 281 (462)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~~~~~ 281 (462)
-+...++..+..+.... .+++..+.... +... ..+..++|++.+||+.|+++|++.+.+++.. |.+|+...
T Consensus 149 L~~~~ii~~~~~~~~l~-----p~~~~~~L~~~-~~~~--~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~ 220 (403)
T PRK15132 149 LFSAKIIFLVVMLALMM-----PHIHKVNLLTL-PLQQ--GLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFII 220 (403)
T ss_pred HHHHHHHHHHHHHHHHH-----HhcCHHHHhcC-Cccc--cHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHH
Confidence 32211222212111111 12222222110 0001 1377889999999999999999999998654 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc----------hhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 012508 282 SLALCSTVYIMTSIFGFLLFGDAT----------LDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLN 351 (462)
Q Consensus 282 s~~i~~~~y~~~g~~gy~~fg~~~----------~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 351 (462)
+..+..++|+..-......-+.+. .++++..+.+..+ +.+...+.+++..+++..||--....++|.
T Consensus 221 Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~ 297 (403)
T PRK15132 221 GSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVA---SPHVELAVHLFADLALATSFLGVALGLFDY 297 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876555554333211 1133333332111 246778888999999999999999999999
Q ss_pred HhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCC-HHHHHHhhchhhhhHHHHHhhhHHHHHhcCcc--ccch--
Q 012508 352 LDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPS-IWDAFQFTGATAAVCLGFIFPAAITLRDRHNI--ATKK-- 426 (462)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~~--~~~~-- 426 (462)
+.+.+..++++ ..|. ....+.+++++++|...|+ +....++.|.. ...+.+++|.++-+|.++++ .+.+
T Consensus 298 l~d~~~~~~~~----~~r~-~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~ 371 (403)
T PRK15132 298 LADLFQRRNTV----GGRL-QTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVK 371 (403)
T ss_pred HHHHHccCccc----cCCc-hhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCC
Confidence 99987443221 1133 2345667899999999997 77888888864 67888999999999966532 1222
Q ss_pred -hhHHHHHHHHHHHHHHHHHH
Q 012508 427 -DKILCIFMIVLAVFSNVVAI 446 (462)
Q Consensus 427 -~~~~~~~~~~~g~~~~v~g~ 446 (462)
.|...+.++++|++..+.-.
T Consensus 372 gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 372 GGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 56778888888887776544
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.90 E-value=3.9e-21 Score=186.86 Aligned_cols=390 Identities=17% Similarity=0.149 Sum_probs=253.6
Q ss_pred cHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHhChhHHHH
Q 012508 45 SFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA--GKSVSYGGLMGEAFGKWGKVL 122 (462)
Q Consensus 45 s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~--~~~~sy~~l~~~~~Gk~~~~~ 122 (462)
+.......+.++.+|+|+|+||-.....|.+++++++++++.+++++.+.+.|...+ ++..++.+++++.+||+++.+
T Consensus 20 ~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i 99 (443)
T PRK13629 20 SDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVV 99 (443)
T ss_pred ccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHH
Confidence 344556999999999999999999999999999999999999999999999998654 456799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHH
Q 012508 123 LQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSAL 202 (462)
Q Consensus 123 ~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 202 (462)
..++.++..+..+.+|...+.+.+.+++.+.. +.... .|... .+...+++....... -+..-+++.+
T Consensus 100 ~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql----------~~~~~-~r~l~-slifv~~l~~iv~~G-~~~v~kv~~~ 166 (443)
T PRK13629 100 ITFLYFFAICPLLWIYGVTITNTFMTFWENQL----------GFAPL-NRGFV-ALFLLLLMAFVIWFG-KDLMVKVMSY 166 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CcCCc-cHHHH-HHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 99999999999999999888887755433211 11001 12222 222222223222322 2444444433
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCcc--CCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHh----cc-----C
Q 012508 203 SVALAVAFVVITVGISIVKLISGGLGMPRI--LPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNE----LE-----D 271 (462)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~----m~-----~ 271 (462)
-+...+...+...+..+.+....+....+. .|...+......+..++|++.+||+.|+.+|++... .+ +
T Consensus 167 Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~ 246 (443)
T PRK13629 167 LVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRD 246 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccc
Confidence 332122222111111111111111110000 011111112245778899999999999999998777 43 2
Q ss_pred --CCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------hhHHhh----CCCCCCCCCch--hHHHHHHHHHHHHH
Q 012508 272 --STHIKGVVRTSLALCSTVYIMTSIFGFLLFGDAT-------LDDVLA----NFDADLGIPFG--SVLSDVVRVSYAAH 336 (462)
Q Consensus 272 --~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~-------~~~il~----n~~~~~~~~~~--~~~~~~~~~~~~i~ 336 (462)
++|.+|+...+..+..++|+..-..+...-+.+. +.+++. .++++.....+ ..+..+..++..++
T Consensus 247 ~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~A 326 (443)
T PRK13629 247 FTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVA 326 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHH
Confidence 2378899999999998888877666665544221 112122 12221100000 24667777888889
Q ss_pred HHHHhhhhhhHHHHHHhhhcCC---CCCCCCCCCc-eehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhh
Q 012508 337 LMLVFPVIFYPLRLNLDGLLFP---SARPLGSSNT-RFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPA 412 (462)
Q Consensus 337 ~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~ 412 (462)
+..||--....++|.+..++.. +.++.+.+.+ ......+++++.++.++..-|++..+++-.|+.....+.|++|.
T Consensus 327 I~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~ 406 (443)
T PRK13629 327 IFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPM 406 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999999888732 1111111111 12344577788999999999999999998888888899999999
Q ss_pred HHHHHhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 012508 413 AITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYS 448 (462)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~ 448 (462)
+.-+|...- ++.+.+..++.+.++|++......|.
T Consensus 407 y~i~kvp~l-~~yr~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 407 YAIRKAPSL-AKYRGRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHHHccHHH-HHhCCCchhHHHHHHHHHHHHHHHHh
Confidence 988883221 12233456788888888877655543
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.87 E-value=4.4e-20 Score=181.21 Aligned_cols=350 Identities=17% Similarity=0.152 Sum_probs=243.5
Q ss_pred cHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHhChhHHHH
Q 012508 45 SFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA--GKSVSYGGLMGEAFGKWGKVL 122 (462)
Q Consensus 45 s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~--~~~~sy~~l~~~~~Gk~~~~~ 122 (462)
+.....+.+.++++|+|+|.+|...++.||+..+++.++...+++++.+.+.|.... .+..++.|++++.|||+++.+
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 456678999999999999999999999999999999999999999999999998533 347899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHH
Q 012508 123 LQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSAL 202 (462)
Q Consensus 123 ~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 202 (462)
..+..++..+..+.+|....++.+.+++.+..+ .. ...++...+ .++++.-.......+.+..++.+
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~----------~~--~p~~~i~~l-ilv~il~~iv~~G~~~i~r~~~i 150 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLG----------TA--PPLRGLLSL-ALILILVAIMSFGEKLLFKIMGP 150 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CC--CcHHHHHHH-HHHHHHHHHHHhcHHHHHHHHHH
Confidence 999999999999999999988887655432111 00 011222222 22222223344456666666655
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCcc--CCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHH----HhccCC----
Q 012508 203 SVALAVAFVVITVGISIVKLISGGLGMPRI--LPDVTDFTSLINLFTVVPVLVTAFICHYNVHSID----NELEDS---- 272 (462)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~----~~m~~~---- 272 (462)
-+...++.+.........+ ++.++. .|.. ...+.++..+.+...+||.+|+.+|++. +|.++|
T Consensus 151 l~~~~ii~l~~l~~~lip~-----~~~~~L~~~p~~--~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~ 223 (397)
T TIGR00814 151 LVFPLVLILVLLSLYLIPH-----WNGANLTTFPSF--NGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAE 223 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-----cCHHHHhcCCcc--cchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHH
Confidence 5532322222222222211 222211 2211 1245678899999999999999999997 444423
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchh-------HHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q 012508 273 THIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLD-------DVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIF 345 (462)
Q Consensus 273 ~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~-------~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 345 (462)
+|.+|....+..+.+++|+..-.......+.+... +.+..+.+... +.....+..++..+++..++--..
T Consensus 224 ~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~---~~~i~~~~~~f~~~Ai~tSFlG~~ 300 (397)
T TIGR00814 224 RKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFN---AAWISYAGPIVAIVAISKSFFGHY 300 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcC---CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999988777666665532111 11221111111 145677888888999999999999
Q ss_pred hHHHHHHhhhcCCCCC-C-CCCCCc-eehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHH
Q 012508 346 YPLRLNLDGLLFPSAR-P-LGSSNT-RFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLR 417 (462)
Q Consensus 346 ~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~ 417 (462)
..++|.+.+++....+ + +..+.+ .......++++.++.++..-|++..+++-.|+.....+.|++|.+.-+|
T Consensus 301 lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~ 375 (397)
T TIGR00814 301 LGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYK 375 (397)
T ss_pred HhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 9999999988721111 1 111222 1234456778889999999999999999888888889999999998888
No 16
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.68 E-value=6.4e-15 Score=143.78 Aligned_cols=370 Identities=12% Similarity=0.078 Sum_probs=238.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHH
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLG--LVLGIALIIFMAFLTDASIELLLRFSRA--GKSVSYGGLMGE 113 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~--~~~~sy~~l~~~ 113 (462)
.+.+||.+.+..++.++++++|+|++..|.+..+.+ ...+++..+++++++..+..+..|.... .+..+|.-+ .+
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi-~~ 86 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI-SE 86 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH-HH
Confidence 456889999999999999999999999999887554 6677888889999999999999998753 334456555 77
Q ss_pred HhChhHHHHHHHHHHHHHHHHH-HHHHHhhccc-ccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcc--cc
Q 012508 114 AFGKWGKVLLQLSVLINNVGVL-IVYMIIIGDV-LSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPL--AC 189 (462)
Q Consensus 114 ~~Gk~~~~~~~~~~~l~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl--~~ 189 (462)
+||+..++.....-.+....+. ..+.+..+++ ++..++. +.. .+...-.++.++++.+ ..
T Consensus 87 afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~--------------c~~--p~~~~~lla~~~l~~lt~~n 150 (479)
T KOG1287|consen 87 AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL--------------CDV--PRVASKLLAAALLVLLTLIN 150 (479)
T ss_pred HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC--------------CCC--chHHHHHHHHHHHHHHHHHh
Confidence 7888888777766666666665 7777888887 5444431 111 1111111122122222 22
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhc
Q 012508 190 FKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNEL 269 (462)
Q Consensus 190 ~~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 269 (462)
.-+.+.-.+++.+..++.+..+.++.+..++....++.+.....+--....+..++..++-...|+|.|-..+..+.+|+
T Consensus 151 ~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi 230 (479)
T KOG1287|consen 151 SFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI 230 (479)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhh
Confidence 22334444455555555566665655556665555544432211111122345557778888899999999999999999
Q ss_pred cCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCchhH-HhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q 012508 270 EDST-HIKGVVRTSLALCSTVYIMTSIFGFLLFG--DATLDD-VLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIF 345 (462)
Q Consensus 270 ~~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg--~~~~~~-il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 345 (462)
|||+ +++++..+++.+++++|..+-+..+.+-. |...++ +-..+.+... +.+ .....++.+++.+.+....+
T Consensus 231 knP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~---G~~-~~~ip~~ValS~~G~~n~~i 306 (479)
T KOG1287|consen 231 KNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRIL---GVF-AWAIPFSVALSLIGSLNSVI 306 (479)
T ss_pred cCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhc---cch-HHHHHHHHHHHhhhhhhhHH
Confidence 9999 69999999999999999998877665432 111111 1111111111 122 25667778888888888777
Q ss_pred hHHHHHHhhhcCCCCCCC--C-CCCce-ehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCc
Q 012508 346 YPLRLNLDGLLFPSARPL--G-SSNTR-FAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHN 421 (462)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~--~-~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~ 421 (462)
+...+.+.......+-+. . .+.++ .-...+++.....++..+..|+.+++++.+-.......+.+-+++++|.+++
T Consensus 307 fs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p 386 (479)
T KOG1287|consen 307 FSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHP 386 (479)
T ss_pred HHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 777666655432221110 0 01111 1122344455555666677799999999999988888888999999998887
Q ss_pred cccchhh
Q 012508 422 IATKKDK 428 (462)
Q Consensus 422 ~~~~~~~ 428 (462)
+.+|.-|
T Consensus 387 ~~~rPiK 393 (479)
T KOG1287|consen 387 PLPRPIK 393 (479)
T ss_pred CCCCCEe
Confidence 6665544
No 17
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.67 E-value=5.3e-14 Score=138.45 Aligned_cols=340 Identities=15% Similarity=0.180 Sum_probs=216.7
Q ss_pred CCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhHHH
Q 012508 42 NGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKV 121 (462)
Q Consensus 42 ~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~~ 121 (462)
+|.|.+|..+.+.++++|+|++.+|....+.+-..+++..++.++........+.+..++.++.+..+..++.+||+.+.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGR 80 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHH
Confidence 46899999999999999999999999877755456677788888888888999999888777778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhH
Q 012508 122 LLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSA 201 (462)
Q Consensus 122 ~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 201 (462)
+..+...++....+.......++.++... -+. ...+.. ....+++.-....+.++....++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------l~~---tp~~~~-~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYL--------------LPR---TPIIVI-IILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCC---CCHHHH-HHHHHHHHHHHHHccHHHHHHHHH
Confidence 99988888877776666666666663211 011 112222 222222233345566777777776
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhh-hhHhHHHhhhhchHHHHHhccCCCchhhHHH
Q 012508 202 LSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVV-PVLVTAFICHYNVHSIDNELEDSTHIKGVVR 280 (462)
Q Consensus 202 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~ 280 (462)
+.....+...... ...... +..+..+..|-.+ .++.+...+. +...++|.+...+.....++|||+|.+|...
T Consensus 143 i~~~~~i~~~~~i--l~~~~~--~~~~~~~l~P~~~--~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~ 216 (359)
T TIGR00912 143 ILLIIFLILFILV--LILLAP--KLGNIKNLLPVLE--NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSII 216 (359)
T ss_pred HHHHHHHHHHHHH--HHHHhc--ccccHHHccCccc--cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHH
Confidence 6553332221111 111111 1122223334332 2344444444 3778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhH-------HhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 012508 281 TSLALCSTVYIMTSIFGFLLFGDATLDD-------VLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLD 353 (462)
Q Consensus 281 ~s~~i~~~~y~~~g~~gy~~fg~~~~~~-------il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 353 (462)
.+..++.++|...-......+|.+..++ ......- ..+-+.+..+.-..+....+...-+..+.....+.
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~---~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINI---GDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888887432211 1111110 01224455566677788888888889999999988
Q ss_pred hhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCC-HHHHHHhhch---hhhhHHHHHhhhHHHHHhc
Q 012508 354 GLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPS-IWDAFQFTGA---TAAVCLGFIFPAAITLRDR 419 (462)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~ii~l~G~---~~~~~l~~ilP~~~~~~~~ 419 (462)
+++..++. |....... .....++. .|| ... ...... ..+....+++|.++.+..+
T Consensus 294 ~~~~~~~~-------~~~~~~~~--~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 294 KLFKKRKY-------SILILPVL--MVIFSISF-FPDSSNQ-LFDYLEFLPIIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred HHhCCCCc-------chhHHHHH--HHHHHHHH-ccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87543322 22222111 12333333 444 333 222221 2334566789998877643
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=99.65 E-value=9.6e-13 Score=133.08 Aligned_cols=241 Identities=15% Similarity=0.085 Sum_probs=153.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhChh
Q 012508 40 EVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFGKW 118 (462)
Q Consensus 40 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk~ 118 (462)
++|+.+.++.+...+++++|+|++.+|..+.+.|- .+++..++.+++.......+.|...+ ++........++.+||+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~ 82 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS 82 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc
Confidence 46789999999999999999999999998888886 46777778888888888888886644 44455556678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhh
Q 012508 119 GKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSF 198 (462)
Q Consensus 119 ~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 198 (462)
..++.....++.......++.....+++..+++. . ............++.+.-+...+..+....
T Consensus 83 ~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~--------------~-~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~ 147 (438)
T PRK10655 83 GNFMANYTYGVSLLIANVAIAISAVGYGTELFGA--------------T-LSPVQICLATIGVLWLCTVANFGGARITGQ 147 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------c-cchHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999998877766655555444444444332220 0 001111211112212222234445565666
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-chhh
Q 012508 199 TSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-HIKG 277 (462)
Q Consensus 199 ~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~ 277 (462)
++.+.....++.++++++........++.. +...|. ....+.++..++....|+|.|.+......+|+|||+ +.+|
T Consensus 148 i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr 224 (438)
T PRK10655 148 ISSVTVWGVIIPVVGLSIIGWFWFSPSLYV-AAWNPH--HLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPI 224 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccc-CCcCcc--CCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH
Confidence 665554333222222222222221111111 111111 112234566778888999999999999999999998 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012508 278 VVRTSLALCSTVYIMTSIFGFL 299 (462)
Q Consensus 278 ~~~~s~~i~~~~y~~~g~~gy~ 299 (462)
.+..+..++.++|.+.......
T Consensus 225 Ai~~~~~~~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 225 AVLGGTLGAAVIYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987655443
No 19
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.64 E-value=1.5e-12 Score=132.64 Aligned_cols=356 Identities=11% Similarity=0.106 Sum_probs=201.9
Q ss_pred CCCcHHHHHHHHHHHHHhhhhchHHHHHH-HhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-cHHHHHHHHhChh
Q 012508 42 NGASFTGAVFNLSTTIVGAGIMALPATMK-VLGLVLGIALIIFMAFLTDASIELLLRFSRAGKS-V-SYGGLMGEAFGKW 118 (462)
Q Consensus 42 ~~~s~~~~~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~-sy~~l~~~~~Gk~ 118 (462)
|+.+.++.+...+++++|+|++.+|.... .+|....++..++.++........+.|...+.++ . ...+.+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 57899999999999999999999999755 4454334555677777777777888887655432 2 4556689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhh
Q 012508 119 GKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSF 198 (462)
Q Consensus 119 ~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 198 (462)
..+++....++.......++.....+.+....+. ++.. .....+.....++..+-+...+..+..+.
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~--~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 147 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPI-----------FGGG--NNPPSIIGASVLLWCVHFLVLRGVEGAAF 147 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------ccCC--CcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999888776655666665555544332221 0000 01111111111112222334456666677
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCC----CCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCCc
Q 012508 199 TSALSVALAVAFVVITVGISIVKLISGGLGMPRILPD----VTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTH 274 (462)
Q Consensus 199 ~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~ 274 (462)
++.+..+..++.++..++........+.... +.+++ ......+.++..++....|+|.|.+......+|.||+++
T Consensus 148 i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ 226 (468)
T TIGR03810 148 INTITTIAKLVPLFVFIVIGIFAFKGDTFTN-DFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSD 226 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHhhcCc-cccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCccc
Confidence 6666654444333332222222111111111 00100 111122445667888899999999999999999999889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----hh---HHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012508 275 IKGVVRTSLALCSTVYIMTSIFGFLLFGDAT-----LD---DVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFY 346 (462)
Q Consensus 275 ~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~-----~~---~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 346 (462)
.+|....+...+.++|..+....+...+... .+ ....+.. ..+...+..+...++.+.+......
T Consensus 227 ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-------g~~~~~~i~~~~~is~~~~~~~~~~ 299 (468)
T TIGR03810 227 VGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-------GTWGAVLINIGLIISILGAWLSWTL 299 (468)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877664443211 00 1111111 1244556666777777777777666
Q ss_pred HHHHHHhhhcC----CCCC-CC-CCCCcee-hhhHHHHHHHHHHHHHh-cCCHHHHHHhhchhhhhHHHHHhhhHHHHHh
Q 012508 347 PLRLNLDGLLF----PSAR-PL-GSSNTRF-AFISSGLLIIIFLGANF-IPSIWDAFQFTGATAAVCLGFIFPAAITLRD 418 (462)
Q Consensus 347 ~~~~~~~~~~~----~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~a~~-~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~ 418 (462)
...|....+-. |+.- +. +.+...+ ......+..+....... .+.++.++++.+. ...+.|+++.+.+++.
T Consensus 300 ~~sR~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l 377 (468)
T TIGR03810 300 LPAEIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKL 377 (468)
T ss_pred HHHHHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 66666544421 1100 00 0111111 11111111111111111 1345666665443 3467888998888875
Q ss_pred cC
Q 012508 419 RH 420 (462)
Q Consensus 419 ~~ 420 (462)
++
T Consensus 378 ~~ 379 (468)
T TIGR03810 378 SW 379 (468)
T ss_pred HH
Confidence 43
No 20
>PRK10249 phenylalanine transporter; Provisional
Probab=99.64 E-value=2e-12 Score=131.18 Aligned_cols=293 Identities=13% Similarity=0.034 Sum_probs=177.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHH-HhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMK-VLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~G 116 (462)
+.+|+.+.++..+..++.++|+|++..|-... ++|- ..++..++.+++.......+.|...+ +........+++.+|
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g 96 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWG 96 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhC
Confidence 45678999999999999999999999887544 5565 46777888888888888888887754 556677778999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
++..+++....++.......+.....+..+..+.+ + ...+.. ...+.+++-+...++.+..
T Consensus 97 ~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~--------------~----~~~~~~-~~~~~~l~~~lN~~gv~~~ 157 (458)
T PRK10249 97 PFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP--------------D----VPTWIW-AAAFFIIINAVNLVNVRLY 157 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------c----CcHHHH-HHHHHHHHHHHHHhcchhh
Confidence 99999999988887766566665555555532211 1 011111 1122222333455556666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhccCCC-C--C-CccCCCCC-cchhhhHHHHhhhhHhHHHhhhhchHHHHHhccC
Q 012508 197 SFTSALSVALAVAFVVITVGISIVKLISGGL-G--M-PRILPDVT-DFTSLINLFTVVPVLVTAFICHYNVHSIDNELED 271 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~-~--~-~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 271 (462)
+.++.+..+..+..++..++..+.....+.. + . .+.++... .+..+.++..++....|+|.|-+......+|+||
T Consensus 158 ~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~ 237 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARD 237 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 6665544433332222222222221111110 0 0 01111100 1134556788899999999999999999999999
Q ss_pred CC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCch----hHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012508 272 ST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGDATL----DDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFY 346 (462)
Q Consensus 272 ~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~----~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 346 (462)
|+ +.+|....+...+.++|...........++... +....-+.+.. ..+...+..+...+..+.+..-..+
T Consensus 238 P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~~ 313 (458)
T PRK10249 238 PEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD----SNVVASALNFVILVASLSVYNSGVY 313 (458)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 689999999999999998755444433332110 11111010000 1233445555555666666665556
Q ss_pred HHHHHHhhh
Q 012508 347 PLRLNLDGL 355 (462)
Q Consensus 347 ~~~~~~~~~ 355 (462)
...+.+..+
T Consensus 314 ~~sR~l~a~ 322 (458)
T PRK10249 314 SNSRMLFGL 322 (458)
T ss_pred HHHHHHHHH
Confidence 666655544
No 21
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.62 E-value=2.9e-12 Score=129.23 Aligned_cols=243 Identities=12% Similarity=0.009 Sum_probs=150.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhCh
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFGK 117 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk 117 (462)
+++|+.+.++.+...+++++|+|++.+|....+.|-. .+...++.++........+.|...+ ++.....+.+++ +||
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 4578899999999999999999999999999988753 5556666677777777777776544 444454455677 799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchh
Q 012508 118 WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLS 197 (462)
Q Consensus 118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 197 (462)
+..+.+....+........++.+...+++..+.+.. .+. .... +....++.+.-+...+..+..+
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----------~~~---~~~~-~~~~~i~~~~~~ln~~gvk~~~ 144 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----------NDP---IPAG-IACIAIVWVFTFVNMLGGTWVS 144 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------CCh---HHHH-HHHHHHHHHHHHHHHHhHHHHH
Confidence 999988887666544444445444445553333210 000 0111 1111111122233445555566
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-chh
Q 012508 198 FTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-HIK 276 (462)
Q Consensus 198 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~ 276 (462)
.++.+..++.++.+...++........++.. ..+.. ....+..++..++....|+|.|.+......+|+|||+ +.+
T Consensus 145 ~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~--~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iP 221 (435)
T PRK10435 145 RLTTIGLVLVLIPVVGTAIVGWHWFDAATYA--ANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVP 221 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHhhc--ccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcccccc
Confidence 6555544322222111111111111111110 01110 1123467788899999999999999999999999997 799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 012508 277 GVVRTSLALCSTVYIMTSIFGFLLF 301 (462)
Q Consensus 277 ~~~~~s~~i~~~~y~~~g~~gy~~f 301 (462)
|....+..++.++|...........
T Consensus 222 rAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 222 LATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998877655444
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.62 E-value=1.2e-12 Score=133.46 Aligned_cols=245 Identities=10% Similarity=0.059 Sum_probs=155.4
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CCcHHHHHHHHhCh
Q 012508 41 VNGASFTGAVFNLSTTIVGAGIMALPATMKVLG-LVLGIALIIFMAFLTDASIELLLRFSRAG-K-SVSYGGLMGEAFGK 117 (462)
Q Consensus 41 ~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G-~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~-~~sy~~l~~~~~Gk 117 (462)
+|+.+.++.++..+++++|+|++.+|....+.| -...++..++.++........+.|...+. + .....+..++.+||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~ 85 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGP 85 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccc
Confidence 678999999999999999999999999877654 22334556677777777777788876543 3 34444567999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchh
Q 012508 118 WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLS 197 (462)
Q Consensus 118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 197 (462)
+..++..+..++.......++.....+.+..+++. ++.. ...........+.++.-+...+..+..+
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~-----------~~~~--~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 86 YIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPL-----------FGSG--NPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hcCC--CcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999887766655666665555555433321 0000 0111111122222223334556677777
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCC--CcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCCch
Q 012508 198 FTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDV--TDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHI 275 (462)
Q Consensus 198 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~ 275 (462)
.++.+.....+..+++.++........++... +..+.. ...+.+..+..++....|+|.|.+......+|+||+++.
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~i 231 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKLDLFTA-DFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhccc-ccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccc
Confidence 77766664333333222222222111111111 111110 111234567778888999999999999999999995589
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 012508 276 KGVVRTSLALCSTVYIMTSIFGFL 299 (462)
Q Consensus 276 ~~~~~~s~~i~~~~y~~~g~~gy~ 299 (462)
+|....+..++.++|.........
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999888766443
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.61 E-value=1.2e-11 Score=125.37 Aligned_cols=244 Identities=11% Similarity=0.058 Sum_probs=148.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhCh
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFGK 117 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk 117 (462)
+.+|+.+.++.+...+++++|+|++.+|....+.|- ..+...++.++........+.|.... ++.......+++.+||
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~ 83 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGP 83 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCc
Confidence 467889999999999999999999999998888764 24445555566666666667776544 3333444458999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchh
Q 012508 118 WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLS 197 (462)
Q Consensus 118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 197 (462)
+..+++....++.......+......++...+.+. ..+. .........++.+.-+......|...
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~----~~~~~~~~~~~~~~~~ln~~gvk~~~ 148 (445)
T PRK10644 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----------LKDP----LVLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCCc----HHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 99998888777665444444443333333222110 0000 01111111111222223444556666
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-chh
Q 012508 198 FTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-HIK 276 (462)
Q Consensus 198 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~ 276 (462)
.++.+.....++.++..++..+.....++.. ..++ ..+...+..+..++....|+|.|-+......+|+|||+ +.+
T Consensus 149 ~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iP 225 (445)
T PRK10644 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYM--AAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVP 225 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhcc--CCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchh
Confidence 6666555433332222222222111111111 1111 11112345566778888999999999999999999998 799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 012508 277 GVVRTSLALCSTVYIMTSIFGFLLF 301 (462)
Q Consensus 277 ~~~~~s~~i~~~~y~~~g~~gy~~f 301 (462)
|....+..++.++|.++........
T Consensus 226 rai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 226 IATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999998877754433
No 24
>PRK15049 L-asparagine permease; Provisional
Probab=99.60 E-value=9.7e-12 Score=127.25 Aligned_cols=358 Identities=12% Similarity=0.072 Sum_probs=199.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPA-TMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~G 116 (462)
+.+|+.+.++..+..++.++|+|++..|. +..++|- .+++..++.+++.......+.|.... +........+++.+|
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G 103 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLG 103 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhC
Confidence 35678999999999999999999999888 6666775 45677778888888888888887654 556677778899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
|+..+++....++.............+..+... +. ++ ....+.... .+.++.-+......+..
T Consensus 104 ~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-----------~~-~~----~~~~~~~~~-~~~~l~~~iN~~gvk~~ 166 (499)
T PRK15049 104 EKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-----------GA-FG----GVPQWVFAL-AALTIVGTMNMIGVKWF 166 (499)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cc-CC----CCcHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999998887765444333333333322100 00 00 011222212 22222223444555666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCc--cCCCCC-----cchhhhHHHHhhhhHhHHHhhhhchHHHHHhc
Q 012508 197 SFTSALSVALAVAFVVITVGISIVKLISGGLGMPR--ILPDVT-----DFTSLINLFTVVPVLVTAFICHYNVHSIDNEL 269 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 269 (462)
..++.+...+.+..++..++..+.....+...... ...... .+..+..++.++....|+|.|-+......+|+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 66555544333333222222222211111111000 000000 01233445566677899999999999999999
Q ss_pred cCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhh
Q 012508 270 EDST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGDAT----LDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVI 344 (462)
Q Consensus 270 ~~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~----~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 344 (462)
|||+ +.+|.+..+...+.++|...........+.+. .+....-+... + ..+...+.++...+..+.+....
T Consensus 247 knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~-g---~~~~~~ii~~~ilia~~ss~ns~ 322 (499)
T PRK15049 247 KDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKL-G---VPYIGSIMNIVVLTAALSSLNSG 322 (499)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHc-C---chhHHHHHHHHHHHHHHHHHHHH
Confidence 9999 59999999999888888876665444333211 11111111110 1 02334556666677777777676
Q ss_pred hhHHHHHHhhhcCCCCC-----CCC-CCCcee-hhhHHHHHHHHHHHHHhcCC--HHHHHHhhchhhhhHHHHHhhhHHH
Q 012508 345 FYPLRLNLDGLLFPSAR-----PLG-SSNTRF-AFISSGLLIIIFLGANFIPS--IWDAFQFTGATAAVCLGFIFPAAIT 415 (462)
Q Consensus 345 ~~~~~~~~~~~~~~~~~-----~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~--~~~ii~l~G~~~~~~l~~ilP~~~~ 415 (462)
.+...+.+..+-..+.- +.. .+..+. +....++..+..++....|+ ++.++++.+ ....+.|++|.+.+
T Consensus 323 ~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~ 400 (499)
T PRK15049 323 LYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQ 400 (499)
T ss_pred HHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 67777666554321110 100 111111 11111111111112222332 555566544 44578899999888
Q ss_pred HHhcC
Q 012508 416 LRDRH 420 (462)
Q Consensus 416 ~~~~~ 420 (462)
++.++
T Consensus 401 l~~R~ 405 (499)
T PRK15049 401 MRLRK 405 (499)
T ss_pred HHHHH
Confidence 88554
No 25
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.59 E-value=2.1e-12 Score=132.68 Aligned_cols=250 Identities=14% Similarity=0.098 Sum_probs=149.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhhchHHHHH-HHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHH
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGAGIMALPATM-KVLGLV-LGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEA 114 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af-~~~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~ 114 (462)
.+.+|+.+.++.+...+++++|+|++..|... .++|-. ..++..++.+++.......+.|.... ++........++.
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~ 117 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEV 117 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhH
Confidence 45678899999999999999999999998754 455632 22344556667777777778887654 4444444556889
Q ss_pred hChhHHHHHHHHHHHH-HHHHHHHHHHhhccccc-ccCCCCccccccccccccCccccchhHHHHHHHHHHhhccccccc
Q 012508 115 FGKWGKVLLQLSVLIN-NVGVLIVYMIIIGDVLS-GTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKR 192 (462)
Q Consensus 115 ~Gk~~~~~~~~~~~l~-~~g~~~~y~i~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 192 (462)
+||+..++.....++. ..+.+..+....++++. .+.+. ...+. .....+...++++.-+...+.
T Consensus 118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~----------~~~~~----~~~~~i~~~~i~~~~~ln~~G 183 (501)
T TIGR00911 118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD----------CEVPE----WAIRLVAVLCVLLLTLVNCLS 183 (501)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CCCch----HHHHHHHHHHHHHHHHHHHhh
Confidence 9999888777654432 22334444444444431 11110 00001 011111112222222334555
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCc-chhhhHHHHhhhhHhHHHhhhhchHHHHHhccC
Q 012508 193 IDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTD-FTSLINLFTVVPVLVTAFICHYNVHSIDNELED 271 (462)
Q Consensus 193 l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 271 (462)
.+....++.+..+..+..+++.++..++...+++.+..+....+.. ..+..++..++....|+|.|-.......+|+||
T Consensus 184 vk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~kn 263 (501)
T TIGR00911 184 VKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKN 263 (501)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcC
Confidence 6667777666654444433333333333222222111100000111 123556778888999999999999999999999
Q ss_pred CC-chhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012508 272 ST-HIKGVVRTSLALCSTVYIMTSIFGFLLF 301 (462)
Q Consensus 272 ~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~f 301 (462)
|+ +.+|....+..++.++|.+.........
T Consensus 264 P~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 264 PYRTLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 97 6999999999999999999866554333
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=99.57 E-value=6.9e-12 Score=126.56 Aligned_cols=297 Identities=12% Similarity=0.068 Sum_probs=183.6
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhchHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhChh
Q 012508 41 VNGASFTGAVFNLSTTIVGAGIMALPATMKV-LGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFGKW 118 (462)
Q Consensus 41 ~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~-~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk~ 118 (462)
+|+.+.++.++..+++++|+|++.+|..... .|. .+++..++.+++.......+.|..++ ++.....+..++.+||+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 80 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGEL 80 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcH
Confidence 5779999999999999999999999976554 343 34555666777777777778887654 33345556678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhh
Q 012508 119 GKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSF 198 (462)
Q Consensus 119 ~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 198 (462)
..++.....++.....+..+....++.+..+++....+ . +.+.....+....+......+.++.-+...+..+..+.
T Consensus 81 ~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 81 TAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD--L-PAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--C-chhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 99999999888887777777777777765544310000 0 00000000001111111112223333345566777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-chhh
Q 012508 199 TSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-HIKG 277 (462)
Q Consensus 199 ~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~ 277 (462)
++.+...+.+..+++.++........++. .+.. +.+..++..++....|+|.|.+......+|+|||+ +.+|
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ 230 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASNNY-----TPFM--PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK 230 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHHhc-----CCCC--CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH
Confidence 77777654444333322222222111111 1111 12345677888899999999999999999999997 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC----chh---HHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 012508 278 VVRTSLALCSTVYIMTSIFGFLLFGDA----TLD---DVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRL 350 (462)
Q Consensus 278 ~~~~s~~i~~~~y~~~g~~gy~~fg~~----~~~---~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 350 (462)
....+..++.++|...........+.+ .++ .+..+.. .++...+..+...+..+.+.........+
T Consensus 231 ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~sR 303 (429)
T TIGR00909 231 AIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-------QGIGGLILTAGAVFSIASVMLAGIYGTSR 303 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876554332211 000 1111111 13445566677777777777776666666
Q ss_pred HHhhh
Q 012508 351 NLDGL 355 (462)
Q Consensus 351 ~~~~~ 355 (462)
.+..+
T Consensus 304 ~~~~~ 308 (429)
T TIGR00909 304 VLFAM 308 (429)
T ss_pred HHHHH
Confidence 66554
No 27
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.55 E-value=4.6e-11 Score=121.68 Aligned_cols=293 Identities=11% Similarity=0.053 Sum_probs=170.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPA-TMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~G 116 (462)
+.+|+.+.++.....+++++|+|++..|. +++++|- ..+...++++++.......+.|.... +...++.+.+++.+|
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g 95 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLG 95 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhC
Confidence 35778999999999999999999999876 7777776 45556667777777777777776543 444466688999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
|...+++....++.......+.....+.++....+ +. ..+...... ++++-+......+..
T Consensus 96 ~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p--------------~~----~~~~~~~~~-~~~~~~iN~~g~~~~ 156 (469)
T PRK11049 96 PWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP--------------DL----SDWVASLAV-VLLLLSLNLATVKMF 156 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CC----cHHHHHHHH-HHHHHHHHHHhHHHH
Confidence 99999999999887755555555555544422211 10 112211111 122223444556666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhccC--CCCC-----CccCCCCC-cchhhhHHHHhhhhHhHHHhhhhchHHHHHh
Q 012508 197 SFTSALSVALAVAFVVITVGISIVKLISG--GLGM-----PRILPDVT-DFTSLINLFTVVPVLVTAFICHYNVHSIDNE 268 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 268 (462)
+.++.+.....+..++..++........+ +.+. .+.++... .+..+.++..++....|+|.|.+......+|
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 66665555433333332222222211110 0000 00011000 0123456788899999999999999999999
Q ss_pred ccCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCC-c---hhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhh
Q 012508 269 LEDST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGDA-T---LDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPV 343 (462)
Q Consensus 269 m~~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~-~---~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 343 (462)
+|||+ +.+|....+.....++|..........-+.+ . .+.....+... + ..+...+..+...+..+.+...
T Consensus 237 ~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~-g---~~~~~~~~~~~~~~s~~~~~~~ 312 (469)
T PRK11049 237 TKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLV-G---LPAAASVINFVVLTSAASSANS 312 (469)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHc-C---ChhHHHHHHHHHHHHHHHHHHH
Confidence 99999 5899997767777777776555443222111 0 01111111100 0 0233445555556666666555
Q ss_pred hhhHHHHHHhhh
Q 012508 344 IFYPLRLNLDGL 355 (462)
Q Consensus 344 ~~~~~~~~~~~~ 355 (462)
..+...+.+..+
T Consensus 313 ~~~~~sR~l~a~ 324 (469)
T PRK11049 313 GVFSTSRMLFGL 324 (469)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 28
>PRK11021 putative transporter; Provisional
Probab=99.55 E-value=4.9e-11 Score=119.53 Aligned_cols=226 Identities=15% Similarity=0.122 Sum_probs=142.1
Q ss_pred cHHHHHHHHHHHHHhhhhchHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhChhHHHH
Q 012508 45 SFTGAVFNLSTTIVGAGIMALPATMKVL-GLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFGKWGKVL 122 (462)
Q Consensus 45 s~~~~~~~l~~~~iG~GiL~LP~af~~~-G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk~~~~~ 122 (462)
+.++++...+++++|+|++.+|-...+. |- .+++..++.++........+.|...+ ++.......+++.+||+..+.
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 6789999999999999999999865544 53 56677777788888888888887654 445566677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHH
Q 012508 123 LQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSAL 202 (462)
Q Consensus 123 ~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 202 (462)
.....++.......+......+.+..+++ .. ....+.+.+ ...+++-+...+..+..+.++.+
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~-~~~~~~~~ln~~Gv~~~~~~~~~ 143 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFG--------------WS--SWQLLLAEL-LTLALLWLLNLRGASSSANLQTV 143 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcC--------------CC--CchHHHHHH-HHHHHHHHHHHhhHHHHHHHHHH
Confidence 98887764433333333333333322221 11 011111111 11122223344555555555544
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCc-cCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-chhhHHH
Q 012508 203 SVALAVAFVVITVGISIVKLISGGLGMPR-ILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-HIKGVVR 280 (462)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~~~~ 280 (462)
.. ++...+.. .... .++.+..+ .++... ..++.++..++....|+|.|.+.....-+|+|||+ +.+|...
T Consensus 144 ~~---~~~~~i~~-~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~ 215 (410)
T PRK11021 144 IA---LLIVALVV-AIWW---AGDIKPADIPFPAPG-SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALM 215 (410)
T ss_pred HH---HHHHHHHH-HHHH---HcCCchhcCCCCCCC-CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHH
Confidence 33 21111111 1111 11111111 111111 23566788889999999999999999999999998 6999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012508 281 TSLALCSTVYIMTSIF 296 (462)
Q Consensus 281 ~s~~i~~~~y~~~g~~ 296 (462)
.+..++.++|......
T Consensus 216 ~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 216 IGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987655
No 29
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.54 E-value=9.2e-11 Score=119.60 Aligned_cols=293 Identities=11% Similarity=0.007 Sum_probs=171.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATM-KVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af-~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~G 116 (462)
+.+|+.+.++.....+++++|+|++..|... +.+|-...++..++.+++.......+.|...+ ++...+...+++.+|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 4578899999999999999999999888764 56675445666777888888888888887654 455666678899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
|+..+++....++.....+.......+..+..+.+ + ...+...+... +++-+...+..+..
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p--------------~----~~~~~~~~~~~-~~~~~in~~gvk~~ 151 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP--------------Q----VPVWPWCLLFC-ALIFGLNVVSTRFF 151 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------------c----CcHHHHHHHHH-HHHHHHHHHhHHHH
Confidence 99999998888877665554444444433321111 0 01111111111 22223344445555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhcc------CCCCC-CccC--CCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHH
Q 012508 197 SFTSALSVALAVAFVVITVGISIVKLIS------GGLGM-PRIL--PDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDN 267 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 267 (462)
+..+.+...+.++.++..++..+..... ++... ...+ +++. +....++..++....|+|.|-+.....-+
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~faf~G~e~~~~~a~ 230 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWF-PHGGLPILMTMVAVNFAFSGTELIGIAAG 230 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCC-cccHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5544333322222222222221111110 10000 0000 0010 12234567777788999999999999999
Q ss_pred hccCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCC-c---hhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhh
Q 012508 268 ELEDST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGDA-T---LDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFP 342 (462)
Q Consensus 268 ~m~~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~-~---~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 342 (462)
|+|||+ +.+|.+..+..++.++|...........+.+ . .+....-+.+. +. .+...+..+...+..+.+..
T Consensus 231 E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~-g~---~~~~~ii~~~~~~s~~~~~~ 306 (471)
T PRK11387 231 ETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKV-GI---PYAADIFNFVILTAILSAAN 306 (471)
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHc-CC---chHHHHHHHHHHHHHHHHHH
Confidence 999999 6899999999999999988776544433321 1 11111111110 11 23444555666666666666
Q ss_pred hhhhHHHHHHhhh
Q 012508 343 VIFYPLRLNLDGL 355 (462)
Q Consensus 343 ~~~~~~~~~~~~~ 355 (462)
..++...+.+..+
T Consensus 307 ~~~~~~sR~l~a~ 319 (471)
T PRK11387 307 SGLYASGRMLWSL 319 (471)
T ss_pred HHHHHhhHHHHHH
Confidence 6556666655444
No 30
>PRK10746 putative transport protein YifK; Provisional
Probab=99.54 E-value=5.5e-11 Score=120.65 Aligned_cols=358 Identities=12% Similarity=0.048 Sum_probs=204.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCcHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPA-TMKVLGLVLGIALIIFMAFLTDASIELLLRFSR-AGKSVSYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~-~~~~~sy~~l~~~~~G 116 (462)
+.+|+.+.++..+..+++++|+|++..|. +.+.+|- ..++..++.+++.......+.|... .+...++.+.+++.+|
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g 85 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMS 85 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhC
Confidence 45678999999999999999999999887 5556675 3556677778888888888888754 4566778888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
|+..+++....++.....+.+.....+.+++.+.+ + ...+....... +++-+...+..+..
T Consensus 86 ~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p--------------~----~~~~~~~~~~~-~~~~~lN~~gv~~~ 146 (461)
T PRK10746 86 PFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP--------------E----MAQWIPALIAV-ALVALANLAAVRLY 146 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------------C----CchHHHHHHHH-HHHHHHHHHhHHHH
Confidence 99999999998888777666666666666532221 1 01111111111 22222344445555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhh-c-cCCC-CC---CccCCCC-CcchhhhHHHHhhhhHhHHHhhhhchHHHHHhc
Q 012508 197 SFTSALSVALAVAFVVITVGISIVKL-I-SGGL-GM---PRILPDV-TDFTSLINLFTVVPVLVTAFICHYNVHSIDNEL 269 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~~v~~~~~~~-~-~~~~-~~---~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 269 (462)
+.++.....+.+..++..++..+... . .++. +. .+..++. ..+.++.++..++....|+|.|.+......+|+
T Consensus 147 ~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~ 226 (461)
T PRK10746 147 GEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA 226 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 55544433333222222222111111 1 1110 00 0111110 012345677889999999999999999999999
Q ss_pred cCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCch----hHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhh
Q 012508 270 EDST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGDATL----DDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVI 344 (462)
Q Consensus 270 ~~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~----~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 344 (462)
|||+ +.+|+...+...+.++|...........+.+.. +....-+.+- +. .....+.+....+..+.+....
T Consensus 227 knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~-g~---~~~~~i~~~~il~a~~s~~n~~ 302 (461)
T PRK10746 227 KNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKI-GI---TAAAGIINFVVLTAALSGCNSG 302 (461)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHh-Cc---hhHHHHHHHHHHHHHHHHHHHH
Confidence 9998 789999988888888888765444433332111 0111101000 00 1233455666666777777777
Q ss_pred hhHHHHHHhhhcCCCCCC-----CC-CCCcee-hhhHHHHHHHHHHHHHhcCCHHHHHHhhchh--hhhHHHHHhhhHHH
Q 012508 345 FYPLRLNLDGLLFPSARP-----LG-SSNTRF-AFISSGLLIIIFLGANFIPSIWDAFQFTGAT--AAVCLGFIFPAAIT 415 (462)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~-----~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~--~~~~l~~ilP~~~~ 415 (462)
.+...+.+..+-..+.-+ .+ .+..+. +....+............|+...+++..-.. ....+.|+++.+-|
T Consensus 303 ~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~ 382 (461)
T PRK10746 303 MYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQ 382 (461)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766653221111 00 111111 1111111111222333445555554443332 22467788888888
Q ss_pred HHhcC
Q 012508 416 LRDRH 420 (462)
Q Consensus 416 ~~~~~ 420 (462)
++.++
T Consensus 383 i~~r~ 387 (461)
T PRK10746 383 LRFRR 387 (461)
T ss_pred HHHHH
Confidence 88554
No 31
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.54 E-value=2.3e-11 Score=123.52 Aligned_cols=294 Identities=13% Similarity=0.102 Sum_probs=181.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhhchHH-HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHh
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGAGIMALP-ATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAF 115 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP-~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~ 115 (462)
.+.+|+.+.++..+..+++++|+|++.+| .+.+++|- .+++..++.+++.......+.|...+ +......+.+++.+
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAI 86 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 35678899999999999999999999999 56778885 46777888888888888888887654 55667778899999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccc
Q 012508 116 GKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDS 195 (462)
Q Consensus 116 Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 195 (462)
||+..+++....++.....+.+.....++.+..+.+ + ...+.. ...+.++.-+......+.
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~----~~~~~~-~~~~~~~~~~~n~~gv~~ 147 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP--------------D----IPLWLF-SLILTIVLTLTNLYSVKS 147 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------c----CcHHHH-HHHHHHHHHHHHHHhcch
Confidence 999999999998888777777776666666633222 1 112222 222222222334455666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhccC--CCCC---CccCCCC-CcchhhhHHHHhhhhHhHHHhhhhchHHHHHhc
Q 012508 196 LSFTSALSVALAVAFVVITVGISIVKLISG--GLGM---PRILPDV-TDFTSLINLFTVVPVLVTAFICHYNVHSIDNEL 269 (462)
Q Consensus 196 l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 269 (462)
.+.++.+.....++.++..++..+.....+ ..+. .+..+.. ..++.+.++..++....|+|.|.+......+|+
T Consensus 148 ~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~ 227 (452)
T TIGR01773 148 YGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES 227 (452)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh
Confidence 666665554433333322222211111111 1010 0001100 012334568888999999999999999999999
Q ss_pred cCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchh-----HHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhh
Q 012508 270 EDST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLD-----DVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPV 343 (462)
Q Consensus 270 ~~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~-----~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 343 (462)
|||+ +.+|....+.....++|...........+.+..+ ....-+ +..+. .....+..+...+..+.+...
T Consensus 228 k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~-~~~g~---~~~~~ii~~~~~~~~~~~~~~ 303 (452)
T TIGR01773 228 SNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVL-ELLGI---PHAKLIMDFVVLTAVLSCLNS 303 (452)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHH-HHcCC---hhHHHHHHHHHHHHHHHHHHH
Confidence 9998 6999998888888888887655444333311100 111000 00010 123344455555666666665
Q ss_pred hhhHHHHHHhhh
Q 012508 344 IFYPLRLNLDGL 355 (462)
Q Consensus 344 ~~~~~~~~~~~~ 355 (462)
..+...+.+..+
T Consensus 304 ~~~~~sR~~~a~ 315 (452)
T TIGR01773 304 ALYTTSRMLYSL 315 (452)
T ss_pred HHHHHHHHHHHH
Confidence 566666665544
No 32
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.53 E-value=2.7e-11 Score=122.84 Aligned_cols=355 Identities=12% Similarity=0.074 Sum_probs=200.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHH-HhcHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCcHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMK-VLGLVLGIALIIFMAFLTDASIELLLRFSR-AGKSVSYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~-~~~~~sy~~l~~~~~G 116 (462)
+.+|+.+.++..+..+++++|+|++..|-... ++|- ..++..++.+++.......+.|... .+...++.+.+++.+|
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g 87 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWG 87 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 45788999999999999999999999988555 5564 4566677777877777888888654 4556677777889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
|...+++....++.....+.+.....++.++...+ + ...+.... ...++.-+......|..
T Consensus 88 ~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p--------------~----~~~~~~~~-i~~~~~~~lN~~gv~~~ 148 (456)
T PRK10238 88 SFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP--------------E----IPTWVSAA-VFFVVINAINLTNVKVF 148 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------c----CcHHHHHH-HHHHHHHHHHHHhHHHH
Confidence 99999999999998888888877777777633221 1 11222211 11122223344455666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhccC--CCC--CCccCCC--CCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhcc
Q 012508 197 SFTSALSVALAVAFVVITVGISIVKLISG--GLG--MPRILPD--VTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELE 270 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~--~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 270 (462)
+.++.+...+.+..++..++..+.....+ +.+ ..+.++. +. +..+.++..+++...|+|.|-+......+|+|
T Consensus 149 ~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 149 GEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 66666555444433332222121111111 110 1111111 11 12345666778889999999999999999999
Q ss_pred CCC-chhhHHHHHHHHHHHHHHHHHHHHH--HhcCCCc--hhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q 012508 271 DST-HIKGVVRTSLALCSTVYIMTSIFGF--LLFGDAT--LDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIF 345 (462)
Q Consensus 271 ~~~-~~~~~~~~s~~i~~~~y~~~g~~gy--~~fg~~~--~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 345 (462)
||+ +.+|....+.....+.|...-.... .-+.+-. .+....-+.+. + ......+.++...+..+.+..-..
T Consensus 228 nP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~-g---~~~~~~i~~~~i~~~~~s~~~~~~ 303 (456)
T PRK10238 228 NPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHEL-G---DTFVANALNIVVLTAALSVYNSCV 303 (456)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHc-C---ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 6899998887777777765433211 1111110 01111101100 0 023344555666666666666666
Q ss_pred hHHHHHHhhhcCCCCC-----CCC-CCCceeh-hhHHHHHHHHHHHHHhcC--CHHHHHHhhchhhhhHHHHHhhhHHHH
Q 012508 346 YPLRLNLDGLLFPSAR-----PLG-SSNTRFA-FISSGLLIIIFLGANFIP--SIWDAFQFTGATAAVCLGFIFPAAITL 416 (462)
Q Consensus 346 ~~~~~~~~~~~~~~~~-----~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~--~~~~ii~l~G~~~~~~l~~ilP~~~~~ 416 (462)
+...+.+..+-..+.- +.+ .+..... ....++..+..+.....| .++.++++.+ .+..+.|++|.+-++
T Consensus 304 ~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l 381 (456)
T PRK10238 304 YCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAHM 381 (456)
T ss_pred HHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 6666666554211100 000 1111111 111111111111111223 2555556533 344688999999999
Q ss_pred HhcC
Q 012508 417 RDRH 420 (462)
Q Consensus 417 ~~~~ 420 (462)
+.++
T Consensus 382 ~~r~ 385 (456)
T PRK10238 382 KFRR 385 (456)
T ss_pred HHHH
Confidence 8554
No 33
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.53 E-value=2.2e-11 Score=131.77 Aligned_cols=245 Identities=11% Similarity=0.094 Sum_probs=158.8
Q ss_pred CCCCCCcHHHHHHHH-HHHHHhhhhch-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-CCCcHHHHHHH
Q 012508 39 GEVNGASFTGAVFNL-STTIVGAGIMA-LPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA--G-KSVSYGGLMGE 113 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l-~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~--~-~~~sy~~l~~~ 113 (462)
.+.++.++++.++.- +.+++|+|++. +++...++|...+++..+++++++..+...+.+.... . ....|. +.++
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~-yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYY-LISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHH-HHHH
Confidence 345788889988888 99999999987 6778889998888999999999999999999987764 2 344554 4588
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccc
Q 012508 114 AFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRI 193 (462)
Q Consensus 114 ~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 193 (462)
.+|+..+..+.++.++.....+..|.+..++++..+++.... ....+. ....+.+. .+.+ +++-+......
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~------~~~~~~-~~~~~iia-~i~l-~ll~~In~~Gv 222 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS------KIMVDP-INDIRIYG-TVTV-VVLLGISFAGM 222 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc------ccccCc-cccchHHH-HHHH-HHHHHHHHhhH
Confidence 899999999999999988888999999888888665431000 000001 01112211 1122 11222233445
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCC-----------CCccCCCCCcchhhhHHHHhhhhHhHHHhhhhch
Q 012508 194 DSLSFTSALSVALAVAFVVITVGISIVKLISGGLG-----------MPRILPDVTDFTSLINLFTVVPVLVTAFICHYNV 262 (462)
Q Consensus 194 ~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~ 262 (462)
+..+.++.+.+++.++.++.+++..+... .+... ..+..|.+. .....+...++++.+||.|....
T Consensus 223 k~~ak~q~vl~vi~ll~ll~~iig~~~~~-~~~~~~g~~~~~~~~f~~n~~p~~~--~~~~~f~~~~ai~F~A~tGi~ag 299 (953)
T TIGR00930 223 EWENKAQVLFLVIVLLSILNIFVGTIIPA-FDKPAKGFFGLGNEIFSENFIPGIP--GPEGGFFSLFGIFFPSVTGILAG 299 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeecC-CCCCccceeeccchhhhhccCCCCC--CcccHHHHHHHHHHHHHHHHHHH
Confidence 55555555544322222222211111100 00000 001112111 11122667788888899999999
Q ss_pred HHHHHhccCCC-chhhHHHHHHHHHHHHHHHHHHH
Q 012508 263 HSIDNELEDST-HIKGVVRTSLALCSTVYIMTSIF 296 (462)
Q Consensus 263 ~~i~~~m~~~~-~~~~~~~~s~~i~~~~y~~~g~~ 296 (462)
..+.+|+|||+ +.++....+..+++++|+++.++
T Consensus 300 an~sgElKnP~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 300 ANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 69999999999999999998754
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.52 E-value=4.5e-10 Score=115.07 Aligned_cols=298 Identities=12% Similarity=0.029 Sum_probs=169.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPA-TMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~G 116 (462)
+.+|+.+.++..+..+++++|+|++.+|. +..++|-...++..++.+++.......+.|...+ ++.......+++.+|
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g 91 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVE 91 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcC
Confidence 45678999999999999999999999997 6667786556778888899999999999987654 556666677889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
+..++++....++................+....+ + ...+......+ +++-+......+..
T Consensus 92 ~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~--------------~----~~~~~~~~~~~-~~~~~lN~~gv~~~ 152 (489)
T PRK10836 92 EGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP--------------D----TPGWIWSALFL-GVIFLLNYISVRGF 152 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--------------C----CchHHHHHHHH-HHHHHHHHHcchhh
Confidence 99988888877765433332222222222211111 1 01111111111 12222344445554
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhh---hccCCC-CCCccCC--CCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhcc
Q 012508 197 SFTSALSVALAVAFVVITVGISIVK---LISGGL-GMPRILP--DVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELE 270 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~~v~~~~~~---~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 270 (462)
+..+.+.....+..++..++..+.. ..+++. .....+. .......+..+...+....|+|.|.+......+|+|
T Consensus 153 ~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~k 232 (489)
T PRK10836 153 GEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESE 232 (489)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhc
Confidence 4444333322222222111111111 111110 0001110 000112344455556666799999999999999999
Q ss_pred CCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCch--------hHHHHHHHHHHHHHHHHHh
Q 012508 271 DST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFG--------SVLSDVVRVSYAAHLMLVF 341 (462)
Q Consensus 271 ~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~ 341 (462)
||+ +.+|....+...+.++|...........+.+..+....+.......|.. .....+.++...+..+.+.
T Consensus 233 nP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~ 312 (489)
T PRK10836 233 DPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAG 312 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 998 6899999999999999998866544443321111111111100001111 1223455556666677777
Q ss_pred hhhhhHHHHHHhhh
Q 012508 342 PVIFYPLRLNLDGL 355 (462)
Q Consensus 342 p~~~~~~~~~~~~~ 355 (462)
....+...+.+..+
T Consensus 313 n~~~~~~sR~l~a~ 326 (489)
T PRK10836 313 NSGMYASTRMLYTL 326 (489)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766555
No 35
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.52 E-value=9.1e-11 Score=118.89 Aligned_cols=242 Identities=13% Similarity=0.099 Sum_probs=144.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHH-HHhcH-HHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHh
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATM-KVLGL-VLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAF 115 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af-~~~G~-~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~ 115 (462)
+.+|+.+.++.+...++.++|+|++..|... ...|- ...++..++.+++.........|.... ++...-....++.+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAG 84 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhc
Confidence 4577899999999999999999999999864 44552 234455666667777777777776553 22222223357889
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhccccccccc
Q 012508 116 GKWGKVLLQLSVLI-NNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRID 194 (462)
Q Consensus 116 Gk~~~~~~~~~~~l-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 194 (462)
||...+++...... ........+....++++....+ .... .... ....+++++-....+..+
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~--------------~~~~-~~~~--~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP--------------IDPL-LGKF--IAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CchH-HHHH--HHHHHHHHHHHHHHhhhh
Confidence 99988888876443 2333344455555555422111 0000 0111 111111222233455566
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-
Q 012508 195 SLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST- 273 (462)
Q Consensus 195 ~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~- 273 (462)
....++.+.....+..++++++........++...+...+ .....++.++..++....|+|.|-+......+|+|||+
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r 226 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGK 226 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc
Confidence 6666666555444433322222222222222221111111 01112245677888889999999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 012508 274 HIKGVVRTSLALCSTVYIMTSIFGF 298 (462)
Q Consensus 274 ~~~~~~~~s~~i~~~~y~~~g~~gy 298 (462)
+.+|.+..+..++.++|........
T Consensus 227 ~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 227 TMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999988765443
No 36
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.51 E-value=3.2e-11 Score=121.69 Aligned_cols=288 Identities=16% Similarity=0.167 Sum_probs=181.4
Q ss_pred CcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHh-hcCCCcHHHHHHHHhChhHHH
Q 012508 44 ASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLT-DASIELLLRFSR-AGKSVSYGGLMGEAFGKWGKV 121 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~-~~~~~sy~~l~~~~~Gk~~~~ 121 (462)
.++++.+...++.++|+|++..| ...+.|.. .++..++.+++. ........|..+ .++........++.+||+.++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~ 78 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGF 78 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchh
Confidence 36789999999999999999999 77677765 444444444544 566666667654 556666667789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhH
Q 012508 122 LLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSA 201 (462)
Q Consensus 122 ~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 201 (462)
+......+.......++.....+.+...+.. ...+. ......+ ...+++..-....+..|..++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--~~~~~~i-~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 79 IVGWLYWVAYILSLASVASSFASYLLSLFGP----------DLNPS--PWPQFLI-AIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG----------GGTCS--HHHHHHH-HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cccceeEEEeeccccccccchhhhhhhcccc----------ccccc--cchheee-eecccccceEeeechhhhhhhhhh
Confidence 9999999999988888888888888544320 00000 0112221 222222333444555677777777
Q ss_pred HHHHHHH-HHHHHHHHHhhhhhccCCCC-----CCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCCch
Q 012508 202 LSVALAV-AFVVITVGISIVKLISGGLG-----MPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHI 275 (462)
Q Consensus 202 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~ 275 (462)
+...+.+ ..+++.++..+.....+..+ .+...|+ .......+++...|+|.|.+..+...+|+|| ++.
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~i 219 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTI 219 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHH
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccCCc-----cccchhhHHHHHHhhcccccccccccccccc-hhh
Confidence 6665555 23333333333332222111 0111121 2234678888999999999999999999998 789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCchh---HH---hhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 012508 276 KGVVRTSLALCSTVYIMTSIFGFLLFGDATLD---DV---LANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLR 349 (462)
Q Consensus 276 ~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~---~i---l~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~ 349 (462)
+|....+..++.++|...........+++... +. ...+.+..+ +.+...+..+...+..+.+.........
T Consensus 220 p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~s 296 (426)
T PF13520_consen 220 PRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG---GSWLAIIVSIAAILSLFGSINAFIFGAS 296 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH---CCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc---ccccccccccccccccccccchhhcchh
Confidence 99999999999999999877766665542111 10 111101000 0244556666777777777777777777
Q ss_pred HHHhhh
Q 012508 350 LNLDGL 355 (462)
Q Consensus 350 ~~~~~~ 355 (462)
+.+..+
T Consensus 297 R~l~~~ 302 (426)
T PF13520_consen 297 RLLYAM 302 (426)
T ss_dssp HHHHHH
T ss_pred hccccc
Confidence 766555
No 37
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.51 E-value=3.6e-11 Score=124.38 Aligned_cols=369 Identities=12% Similarity=0.013 Sum_probs=206.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHH--HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHh
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATM--KVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAF 115 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af--~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~ 115 (462)
+.+|+.+.++.++.-++.++|+|++.+|-.. ..+|-. .++..++.++.+........|...+ ++..+.....++.+
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~ 103 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTV 103 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHh
Confidence 3578899999999999999999999999644 346743 4555667777777777788876654 33333334467889
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccc--cccccccccCccccchhHHHHHHHHHHhhcccccccc
Q 012508 116 GKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHH--AGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRI 193 (462)
Q Consensus 116 Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 193 (462)
|+...+++....++.....+.+.....++++..++...... .+... . .............+ .++++.-+...+..
T Consensus 104 G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~-~-~~~~l~~~~~~~a~-~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 104 GELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFK-L-NYDGLAEYPDFFAV-CLILLLAVLLSFGV 180 (557)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc-c-cCCcccccchHHHH-HHHHHHHHHHHhch
Confidence 99999999999888776666555555555444333210000 00000 0 00000011111111 11122223455677
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcc--CCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccC
Q 012508 194 DSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRI--LPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELED 271 (462)
Q Consensus 194 ~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 271 (462)
+..++++.+.....+..++++++........+++..... .+.+. +.++.+++.++....|+|.|........+|+||
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~kn 259 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIATTGEEVKN 259 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHhHHhccC
Confidence 888888777665555444433333332221122211000 00111 123456788888999999999999999999999
Q ss_pred CC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCC---chhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhH
Q 012508 272 ST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGDA---TLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYP 347 (462)
Q Consensus 272 ~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~---~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 347 (462)
|+ +.+|....+..+++++|..+...-...-+.. ..+.+...+... + .++...+..+...+.++.+....++.
T Consensus 260 P~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~-g---~~~~~~ii~~~~~~~~~~sl~~~~~~ 335 (557)
T TIGR00906 260 PQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYV-G---WGPAKYIVAVGALCGMSTSLLGGMFP 335 (557)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHc-C---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 5999999999999999998876544332211 111111111111 1 13444555566666666666666666
Q ss_pred HHHHHhhhcCCCCC-----CCCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhc
Q 012508 348 LRLNLDGLLFPSAR-----PLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDR 419 (462)
Q Consensus 348 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~ 419 (462)
..+.+..+-..+.- +..+++..-.....+..+++.+++. ..++..+.++.. .+..+.|.+++.-.+..+
T Consensus 336 ~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~-~~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR 409 (557)
T TIGR00906 336 LPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAF-LFDLKALVDLLS--IGTLLAYSLVAACVLILR 409 (557)
T ss_pred HHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHH-HcCHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 66666554311110 1011111112222222333333443 335666666643 333677888877666644
No 38
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.50 E-value=3e-10 Score=116.26 Aligned_cols=237 Identities=10% Similarity=0.033 Sum_probs=154.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhchHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHhCh
Q 012508 41 VNGASFTGAVFNLSTTIVGAGIMALPA-TMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGK--SVSYGGLMGEAFGK 117 (462)
Q Consensus 41 ~~~~s~~~~~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~--~~sy~~l~~~~~Gk 117 (462)
+|+.+.++..+..++.++|+|++..|. +.+++|-...++..++.+++.......+.|.....+ ...|...+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 367899999999999999999998775 566667443466677778888888888888776544 34788889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchh
Q 012508 118 WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLS 197 (462)
Q Consensus 118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 197 (462)
+..+++....++.....+.+.....+..+....+ +. ....+.. + .. ++.-+...+..+..+
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~-~-~~-~~~~~in~~gv~~~~ 141 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD--------------KV--NPAVWIA-I-FY-VFIVIINLFGVKGYG 141 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CC--CHHHHHH-H-HH-HHHHHHHHhcchHHH
Confidence 9999999998888777777777776666532211 00 1111221 1 11 222233555566666
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCC----ccC---CCCCcc---hhhhHHHHhhhhHhHHHhhhhchHHHHH
Q 012508 198 FTSALSVALAVAFVVITVGISIVKLISGGLGMP----RIL---PDVTDF---TSLINLFTVVPVLVTAFICHYNVHSIDN 267 (462)
Q Consensus 198 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~---~~~~~~---~~~~~~~~~~~~~~faf~~~~~~~~i~~ 267 (462)
.++.+.....++.++..++..+.....+..... ..+ +.+.+. ..+.++..++....|+|.|-+......+
T Consensus 142 ~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~ 221 (478)
T TIGR00913 142 EAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAG 221 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 666555432332222222222221111110000 000 011111 1256677888889999999999999999
Q ss_pred hccCCC-chhhHHHHHHHHHHHHHHHHHHH
Q 012508 268 ELEDST-HIKGVVRTSLALCSTVYIMTSIF 296 (462)
Q Consensus 268 ~m~~~~-~~~~~~~~s~~i~~~~y~~~g~~ 296 (462)
|+|||+ +.+|.+..+..++.++|......
T Consensus 222 E~knP~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 222 EAANPRKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 68999999999999999987544
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.50 E-value=2.8e-10 Score=115.28 Aligned_cols=240 Identities=11% Similarity=0.002 Sum_probs=151.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhC
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFG 116 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~G 116 (462)
.+.+|+.+.++.+...++.++|......+.++.+.|+..-++..++.+++.......+.|...+ ++.......+++.+|
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G 82 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFG 82 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhC
Confidence 3457789999999999999998555556888889998655556666666666667777876644 455566667899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
|+.++++....++........+....++++..+++. . ..+....... .++-+...+..+..
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~--------------~----~~~~~~~~~~-~~~~~ln~~g~~~~ 143 (442)
T TIGR00908 83 PWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV--------------G----PGWLAALVFY-IVFIGINILGVGEA 143 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------C----chhHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999988887777778888888777443321 0 1111111111 22223344555666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCC-CCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-c
Q 012508 197 SFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILP-DVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-H 274 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~ 274 (462)
+.++.+..+..++.+++.++.........+.......+ +...+..+.++..++....|+|.|.+......+|+|||+ +
T Consensus 144 ~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ 223 (442)
T TIGR00908 144 AKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRD 223 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 66665444322222211111111000000000000000 000112344677888888999999999999999999998 6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 012508 275 IKGVVRTSLALCSTVYIMTSIF 296 (462)
Q Consensus 275 ~~~~~~~s~~i~~~~y~~~g~~ 296 (462)
.+|.+..+..++..+|......
T Consensus 224 iprai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 224 IPRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998888888766443
No 40
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.47 E-value=2e-11 Score=118.10 Aligned_cols=289 Identities=12% Similarity=0.165 Sum_probs=203.9
Q ss_pred CCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhHHHH
Q 012508 43 GASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVL 122 (462)
Q Consensus 43 ~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~~~ 122 (462)
|+|.+|..+.+..+++|+|++.+|....+.+ -.|++..++.++......+++.+..++.+..+..|+.++.+||+.+.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHH
Confidence 5799999999999999999999999987665 266667777788888888888888898889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHH
Q 012508 123 LQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSAL 202 (462)
Q Consensus 123 ~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 202 (462)
..+...++.+......+...++.+.... ......+......+++.-....+.++.+...+.+
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~------------------lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYL------------------LPETPIWVIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999888888888887774321 1122222233333344445666777777765554
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCCchhhHHHHH
Q 012508 203 SVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTS 282 (462)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~s 282 (462)
-....++....+.... .++.+..+..|-.+ .++.++..+.....+.|.+...+.-+...+|+|+|.+|....+
T Consensus 142 ~~~~~~i~~~~i~~~~-----~~~~~~~~l~P~~~--~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~ 214 (320)
T PF03845_consen 142 LFPIFLILLLLILLLS-----IPNIDWDNLLPVLE--SGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHHh-----cccCCHHHeeCccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4432222222222111 23333344455433 4567788887788899999989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHhh---CCCCCCCCC-chhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcC
Q 012508 283 LALCSTVYIMTSIFGFLLFGDATLDDVLA---NFDADLGIP-FGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLF 357 (462)
Q Consensus 283 ~~i~~~~y~~~g~~gy~~fg~~~~~~il~---n~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 357 (462)
..+..++|...-......||....++... +..+....+ .-+.+..+.-..+....+...-+..+...+.+.+.+.
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~ 293 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFK 293 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999988888888888532111000 000000000 1234555666778888888889999999999888763
No 41
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.46 E-value=8.3e-10 Score=112.23 Aligned_cols=239 Identities=12% Similarity=0.061 Sum_probs=150.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPAT-MKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~G 116 (462)
+.+|+.+.++.++..+++++|+|++.+|.. .+.+|- ..++..++.+++.......+.|...+ +......+.+++.+|
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLG 84 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 456779999999999999999999999885 555665 46777888888888888888887754 445666667899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
|...+++.+..++.....+.......+..+..+.+ +. ..+...+ ..+++.-....+..+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~----~~~~~~~-~~~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP--------------TV----PHWIWVL-SVVLIICAVNLMSVKVF 145 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CC----ChHHHHH-HHHHHHHHHHHccchhH
Confidence 99999999988877665555554555544422221 11 0111111 11122233445556666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh----hhhhccC-CCC-CCccCCCCC-cchhhhHHHHhhhhHhHHHhhhhchHHHHHhc
Q 012508 197 SFTSALSVALAVAFVVITVGIS----IVKLISG-GLG-MPRILPDVT-DFTSLINLFTVVPVLVTAFICHYNVHSIDNEL 269 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~~v~~~----~~~~~~~-~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 269 (462)
..++.+.....+..++..++.. .....+. +.. ..+.+++.. .+..+.++..++....|+|.|.+......+|+
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 6666544432322222211111 1111111 100 001111100 01234467788888999999999999999999
Q ss_pred cCCC-chhhHHHHHHHHHHHHHHHHHHHH
Q 012508 270 EDST-HIKGVVRTSLALCSTVYIMTSIFG 297 (462)
Q Consensus 270 ~~~~-~~~~~~~~s~~i~~~~y~~~g~~g 297 (462)
|||+ +.+|....+...+..+|.......
T Consensus 226 knP~k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 226 KDPEKSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 589998888777788887765443
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.38 E-value=2.6e-09 Score=108.16 Aligned_cols=338 Identities=13% Similarity=0.105 Sum_probs=195.1
Q ss_pred HHHHHHhhhhchHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhChhHHHHHHHHHHHH
Q 012508 53 LSTTIVGAGIMALPA-TMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFGKWGKVLLQLSVLIN 130 (462)
Q Consensus 53 l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk~~~~~~~~~~~l~ 130 (462)
-+++++|+|++..|. +.+++|- ..++..++.+++.......+.|...+ ++.....+.+++.+||+..+++....++.
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~ 81 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWF 81 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence 357899999999998 7778886 47788888888888889989987754 55667778889999999999999998887
Q ss_pred HHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHHHHHHHHHH
Q 012508 131 NVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAF 210 (462)
Q Consensus 131 ~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 210 (462)
....+.......+..+....+ . ...+. ....+++++-+....+.|..+.++.+.....++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~---------------~---~~~~~-~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~ 142 (446)
T PRK10197 82 WVLVIPLEANIAAMILHSWVP---------------G---IPIWL-FSLVITLALTGSNLLSVKNYGEFEFWLALCKVIA 142 (446)
T ss_pred HHHHHHHHHHHHHHHHHhccc---------------c---CcHHH-HHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 666655555444443321111 0 11111 1112222222334455666666665555434333
Q ss_pred HHHHHHHhhhhhccCCCC---CC---ccCCC-CCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-chhhHHHHH
Q 012508 211 VVITVGISIVKLISGGLG---MP---RILPD-VTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-HIKGVVRTS 282 (462)
Q Consensus 211 ~~~~v~~~~~~~~~~~~~---~~---~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~~~~~s 282 (462)
++..++..+... .+..+ .. +.++. ...+..+.++..++....|+|.|.+......+|+|||+ +.+|....+
T Consensus 143 li~~ii~~~~~~-~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~ 221 (446)
T PRK10197 143 ILAFIFLGAVAI-SGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSV 221 (446)
T ss_pred HHHHHHHHHHHh-cCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHH
Confidence 333222222111 11110 00 01110 00123455788999999999999999999999999999 589999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCch-----h---HHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 012508 283 LALCSTVYIMTSIFGFLLFGDATL-----D---DVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDG 354 (462)
Q Consensus 283 ~~i~~~~y~~~g~~gy~~fg~~~~-----~---~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 354 (462)
...+.++|...........+.+.. + ....+... .+...+.++...+..+.+..-..+...+.+..
T Consensus 222 ~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-------~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a 294 (446)
T PRK10197 222 IWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-------PHAKLIMDCVILLSVTSCLNSALYTASRMLYS 294 (446)
T ss_pred HHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999866653333221110 0 11222211 23445566666777777777777777777665
Q ss_pred hcCCCCCC---CCCCCceehhhHHHHH----HHHHHHHHhcC--CHHHHHHhhchhhhhHHHHHhhhHHHHHhcC
Q 012508 355 LLFPSARP---LGSSNTRFAFISSGLL----IIIFLGANFIP--SIWDAFQFTGATAAVCLGFIFPAAITLRDRH 420 (462)
Q Consensus 355 ~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~a~~~~--~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~ 420 (462)
+-..+.-+ .+.+..+.-...+.+. ....+.....+ .++.++++++... .+.|+++.+-+++.++
T Consensus 295 ~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 295 LSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 53211110 0011111111111111 11111111122 3666777766555 4778888877777543
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.28 E-value=2.4e-08 Score=101.97 Aligned_cols=251 Identities=13% Similarity=0.080 Sum_probs=160.7
Q ss_pred CCCCCCCcHHH-HHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCcHHHHHHHHh
Q 012508 38 GGEVNGASFTG-AVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSR-AGKSVSYGGLMGEAF 115 (462)
Q Consensus 38 ~~~~~~~s~~~-~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~-~~~~~sy~~l~~~~~ 115 (462)
.+.+++.+.++ ......+.++|.|++.+|......+ ....+..++.+++.........+... .++...+.+..++.+
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 86 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRAL 86 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhc
Confidence 44566777777 8899999999999999999888765 22222234444444444555556554 344445556689999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccc
Q 012508 116 GKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDS 195 (462)
Q Consensus 116 Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 195 (462)
||+..+++....++.......+......+.+..+.+... ....+ ......+......+.-+...+..+.
T Consensus 87 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~ln~~G~~~ 155 (466)
T COG0531 87 GPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-------LLSIG----PLLIILIALALIALLTLLNLRGIKA 155 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-------hhcCC----chHHHHHHHHHHHHHHHHHHhhHHH
Confidence 998889999999998888888888888876655443210 00000 0112222222223333445556666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCC-cchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-
Q 012508 196 LSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVT-DFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST- 273 (462)
Q Consensus 196 l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~- 273 (462)
....+.+..+..++..++..+.......... .+..+... .......+..++....++|.|-+...+..+|+|||+
T Consensus 156 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r 232 (466)
T COG0531 156 SAKINSIITILKIIILLIFIILGLFAFGFSN---GNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR 232 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---cccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc
Confidence 6666666665555444444333333322221 11111111 122344677888889999999999999999999996
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012508 274 HIKGVVRTSLALCSTVYIMTSIFGFLLFGD 303 (462)
Q Consensus 274 ~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~ 303 (462)
+.+|....++.++.++|...........++
T Consensus 233 ~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 233 TIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 689999999999999999988887766654
No 44
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.27 E-value=8.3e-11 Score=100.22 Aligned_cols=223 Identities=18% Similarity=0.254 Sum_probs=152.7
Q ss_pred CcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------c-----
Q 012508 44 ASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA----------------G----- 102 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~----------------~----- 102 (462)
-|..-.....+|-++|+|.|+||.+|..+||..++.++.+.+++++.+....+++... .
T Consensus 12 ysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~s 91 (319)
T KOG3832|consen 12 YSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDES 91 (319)
T ss_pred hhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccc
Confidence 4445557788999999999999999999999999999999999999999988886530 0
Q ss_pred ------------------------------------CCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012508 103 ------------------------------------KSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 103 ------------------------------------~~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
+....++++...|.|.+-.+..++++++++|....|...+-.+.
T Consensus 92 tasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 92 TASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred ccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 01124588888899999999999999999999999998877666
Q ss_pred cccCCCCccc------cccccccccCccc------cchhHHHHHHHHHHhhcccccccccchhhhhHHHHHHHHHHHHHH
Q 012508 147 SGTSSSGVHH------AGVLEGWFGDHWW------NGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVIT 214 (462)
Q Consensus 147 ~~~~~~~~~~------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~ 214 (462)
-++.+..... .+.+++.-+.+|- ...++.+.+..+++.+|+.+.. +++.++++.+...+........
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~d-iqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFAD-IQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEec-cccchhHHHHHHHHHHHhccch
Confidence 5544322111 1111222122221 1233444555666777876654 7888899888876666655544
Q ss_pred HHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC
Q 012508 215 VGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST 273 (462)
Q Consensus 215 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 273 (462)
......+...+. ...+| ..-.+.++-+-++...|+|.+|...|.....++.+.
T Consensus 251 ~~l~tmqaeeda---a~a~p---~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 251 ISLATMQAEEDA---AAAHP---PARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhhcccc---cccCC---ccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 443333322221 11122 223344455667788999999999999988887665
No 45
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.17 E-value=9.5e-08 Score=94.57 Aligned_cols=355 Identities=13% Similarity=0.107 Sum_probs=224.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhch-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMA-LPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~G 116 (462)
+-+|+...+...+.-++..+|+|.+- .-.+.+++|=...++..++.+.+.+..+..+.|.... +...++...+.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 36788999999999999999999875 7889999999989999999999999999999998765 445569999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
+-..+.+....++.-.-++..-++..+..++. |+++. .....|..++.++++++=+.-.|...+.
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~y--------------W~p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~ 185 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQY--------------WFPDT-VPPWIWIAIFLVLIFLLNLFGVKGFGET 185 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh--------------hcCCC-CChHHHHHHHHHHHHHHHHhccccccee
Confidence 99999999999999999999999999887733 32111 1122344444444333334444544444
Q ss_pred hh-hhHHHHHHHHHHHHHHHHHhhhhhccCCCC-CC---ccC--CCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhc
Q 012508 197 SF-TSALSVALAVAFVVITVGISIVKLISGGLG-MP---RIL--PDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNEL 269 (462)
Q Consensus 197 ~~-~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~---~~~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 269 (462)
.+ +|.+=++ +++..++ ..+.....+... .+ +.+ |.. -...+.++...+-+..|+|.|.+.+---..|-
T Consensus 186 Efw~s~iKV~-~ii~Fii---~gii~~~Gg~~~~~~ig~~yw~~pg~-F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs 260 (541)
T COG0833 186 EFWFSSIKVL-TIIGFII---LGIIIICGGGPTHGYIGFNYWHDPGA-FAGGFKGFCSVFVIAAFSFSGTELVGLAAGES 260 (541)
T ss_pred hHHHHHHHHH-HHHHHHH---HHHHHhcCCCCCCCCcceeeecCCCC-CCcchHHHHHHHhhheeeeeceeeeeeeeccc
Confidence 43 3333332 2222111 111111111111 11 111 211 12347788888888999999999999999999
Q ss_pred cCCC-chhhHHHHHHHHHHHHHHHHHHH-HHH-hcCC----------CchhHHhhCCCCCCCCCchhHHHHHHHHHHHHH
Q 012508 270 EDST-HIKGVVRTSLALCSTVYIMTSIF-GFL-LFGD----------ATLDDVLANFDADLGIPFGSVLSDVVRVSYAAH 336 (462)
Q Consensus 270 ~~~~-~~~~~~~~s~~i~~~~y~~~g~~-gy~-~fg~----------~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~ 336 (462)
+||+ ..+|+..-.+-=+.++|+..-+. |.. .|.| ...++....+.+.. . ..+..+.|....++
T Consensus 261 ~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~G-i---~~~~~imNaVIL~s 336 (541)
T COG0833 261 ENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAG-I---PVAASIMNAVILTS 336 (541)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcC-C---ccchHHHHHHHHHH
Confidence 9998 57888887776677776643332 111 2222 11123333333221 1 34567888889999
Q ss_pred HHHHhhhhhhHHHHHHhhhcCCCCCCC----CCCCcee---hhhHHHHHHHHHHHHHhcC--CHHHHHHhhchhhhhHHH
Q 012508 337 LMLVFPVIFYPLRLNLDGLLFPSARPL----GSSNTRF---AFISSGLLIIIFLGANFIP--SIWDAFQFTGATAAVCLG 407 (462)
Q Consensus 337 ~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~a~~~~--~~~~ii~l~G~~~~~~l~ 407 (462)
++.+-.-.++...+.+..+-..++-++ ..++.|- +..+.++..++++.+.... -+.-+++++|... +++
T Consensus 337 vlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~ 414 (541)
T COG0833 337 VLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIA 414 (541)
T ss_pred HHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHH
Confidence 999999999999999888854332211 1111222 2233333333433333322 2566677766554 455
Q ss_pred HHhhhHHHHHhc
Q 012508 408 FIFPAAITLRDR 419 (462)
Q Consensus 408 ~ilP~~~~~~~~ 419 (462)
++-=++-|++.+
T Consensus 415 W~~I~~shirFR 426 (541)
T COG0833 415 WGSICLSHIRFR 426 (541)
T ss_pred HHHHHHHHHHHH
Confidence 666667777743
No 46
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.16 E-value=3e-08 Score=95.98 Aligned_cols=355 Identities=15% Similarity=0.150 Sum_probs=206.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhch-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhC
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMA-LPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFG 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~G 116 (462)
+-+|+.+.++--+.-++..||+|.+- --.+.+.+|=- -++.-.+++++...-++.+.|...+ +..+|+.+.+++.+|
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG 88 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLG 88 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhc
Confidence 45688999999999999999999653 45566666621 2233556677777778888876644 667899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHH--Hhhccccccccc
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLG--IFSPLACFKRID 194 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pl~~~~~l~ 194 (462)
++++++.....++.-..++.+-+..++.+++..+| +. ..|...+..++ ...=+.-.|...
T Consensus 89 ~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP--------------~v----P~Wv~al~~~~l~~~~NL~sVk~FG 150 (462)
T COG1113 89 PWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP--------------DV----PQWVFALAAVVLLLAVNLISVKVFG 150 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CC----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998844332 22 23332222221 111233344444
Q ss_pred chhh-hhHHHHHHHHHHHHHHHHHhhhhhccCCC---CCCccCCCC-CcchhhhHHHHhhhhHhHHHhhhhchHHHHHhc
Q 012508 195 SLSF-TSALSVALAVAFVVITVGISIVKLISGGL---GMPRILPDV-TDFTSLINLFTVVPVLVTAFICHYNVHSIDNEL 269 (462)
Q Consensus 195 ~l~~-~s~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 269 (462)
++.+ .+.+-+ .+++.++++-...+...+.++. ..++.+.+- --++.+.++..++.+.+|||.+.+.+=--..|-
T Consensus 151 E~EfWfAlIKV-~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et 229 (462)
T COG1113 151 ELEFWFALIKV-AAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA 229 (462)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 4443 333333 2222222111111211121111 111222110 013567889999999999999999999999999
Q ss_pred cCCCc-hhhHHHHHHHHHHHHHH-----HHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhh
Q 012508 270 EDSTH-IKGVVRTSLALCSTVYI-----MTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPV 343 (462)
Q Consensus 270 ~~~~~-~~~~~~~s~~i~~~~y~-----~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 343 (462)
|||+| .+|+...-..=+.++|. +..+..+-.++++..+ ...-|..- +. .....+.|.....+.+.+..-
T Consensus 230 ~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP-FV~~f~~i-Gi---~~Aa~i~N~VVLtAa~S~~NS 304 (462)
T COG1113 230 KDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP-FVTVFSLI-GI---PFAAGIMNFVVLTAALSALNS 304 (462)
T ss_pred cChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCc-HHHHHHHc-CC---cccccceeEEEeechhhcccc
Confidence 99994 66776644444444444 3333444344443322 22222211 11 122345555566667777888
Q ss_pred hhhHHHHHHhhhcCCCCCCCC--CCCce-----ehhhHHHHHHHHHHHHHhcCC--HHHHHHhhchhhhhHHHHHhhhHH
Q 012508 344 IFYPLRLNLDGLLFPSARPLG--SSNTR-----FAFISSGLLIIIFLGANFIPS--IWDAFQFTGATAAVCLGFIFPAAI 414 (462)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~a~~~~~--~~~ii~l~G~~~~~~l~~ilP~~~ 414 (462)
..+...+.+..+-...+-++. +-.++ -+..+.....++.++....|+ |..+.+..+.. ....+.+=.+-
T Consensus 305 glystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s 382 (462)
T COG1113 305 GLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLS 382 (462)
T ss_pred cccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 888888887776422221110 11111 233445555666667777783 34444443332 24445555666
Q ss_pred HHHhcC
Q 012508 415 TLRDRH 420 (462)
Q Consensus 415 ~~~~~~ 420 (462)
|+|.++
T Consensus 383 ~l~~rk 388 (462)
T COG1113 383 QLKLRK 388 (462)
T ss_pred HHHHHh
Confidence 777544
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.13 E-value=1.2e-06 Score=89.66 Aligned_cols=259 Identities=8% Similarity=-0.075 Sum_probs=144.1
Q ss_pred CCCCCCcHHHHHHHHHHHH-HhhhhchHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHh
Q 012508 39 GEVNGASFTGAVFNLSTTI-VGAGIMALPA-TMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAF 115 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~-iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~ 115 (462)
+-+|+.+.++.+..-++.+ +|+|+..+|. +..++|- ..+...++.++........+.|...+ +.......-+++.+
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~ 88 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMG 88 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHc
Confidence 4567799999999888875 8999998776 4455665 34555666777777777777776654 44444445678899
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccc
Q 012508 116 GKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDS 195 (462)
Q Consensus 116 Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 195 (462)
||+..+++....++................+..+.+.... .+.-+++..+.. ..+.+.+ ...++++.-+...+..|.
T Consensus 89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~in~~g~k~ 165 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQI-IGEDPTLTSPSG-AANAVLL-GSVLLVLTTVINCIGVEW 165 (475)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccCccccCCCc-hHHHHHH-HHHHHHHHHHHHHhhhhH
Confidence 9999999988887766544444443333333222110000 000000000000 0111221 112222222334455677
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCC-CccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-
Q 012508 196 LSFTSALSVALAVAFVVITVGISIVKLISGGLGM-PRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST- 273 (462)
Q Consensus 196 l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~- 273 (462)
.+.++.+..++.+..++++++.......++.... ....... .......+..+.....|+|.|-+.....-+|+|||+
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r 244 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGA-SPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRR 244 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCC-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcch
Confidence 7777766664443333332222221111110000 0000000 111123455566667899999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012508 274 HIKGVVRTSLALCSTVYIMTSIFGFLLFG 302 (462)
Q Consensus 274 ~~~~~~~~s~~i~~~~y~~~g~~gy~~fg 302 (462)
+.+|.+..+..+..++|...-+......+
T Consensus 245 ~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 245 VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 68999999999888777665555444444
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.10 E-value=2.1e-06 Score=88.22 Aligned_cols=240 Identities=13% Similarity=0.165 Sum_probs=129.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHhh-cC-CCcHHHHHHHHhC
Q 012508 40 EVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLT-DASIELLLRFSRA-GK-SVSYGGLMGEAFG 116 (462)
Q Consensus 40 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~-~~-~~sy~~l~~~~~G 116 (462)
.++|.+.++.+...+++++|.+ .+|.++.+.|.. +++..++.+++. ........|.... ++ ...-..-.++.+|
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 3578999999999999999976 569888888864 444444444443 3345566776554 32 2444455689999
Q ss_pred hhHHHHHHHHHHHHHHHHH---HH-------HHHhhcccccccCCCCccccccccccccCccccch-hHHHHHHHHHHhh
Q 012508 117 KWGKVLLQLSVLINNVGVL---IV-------YMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGR-TFVLLVTTLGIFS 185 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~---~~-------y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 185 (462)
|+.+++.....+....... .+ +.. .+.... +.+.... .... ....+.+..+.+.
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~-~~~~~~~~~~a~~~~~~~ 146 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFI-FGKDTT-------------QTWHFLG-LNSTQVVGILAVIWMILV 146 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcchh-------------hhhhhhc-ccchHHHHHHHHHHHHHH
Confidence 8888766544333222211 11 111 111110 0000000 0111 1111111111223
Q ss_pred cccccccccchhhhhHHHHHHHHHHHHHHH-HHhhhhhccC-CCCCCc---cC-CCC-CcchhhhHHHHhhhhHhHHHhh
Q 012508 186 PLACFKRIDSLSFTSALSVALAVAFVVITV-GISIVKLISG-GLGMPR---IL-PDV-TDFTSLINLFTVVPVLVTAFIC 258 (462)
Q Consensus 186 pl~~~~~l~~l~~~s~~~~~~~~~~~~~~v-~~~~~~~~~~-~~~~~~---~~-~~~-~~~~~~~~~~~~~~~~~faf~~ 258 (462)
-+...+..+..+.++.++....+...++.+ +........+ +.+.+. .+ +.. ++..+..++..++....|+|.|
T Consensus 147 t~vn~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G 226 (496)
T PRK15238 147 TFVASKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGG 226 (496)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHh
Confidence 334566677777777654432222111111 1111111111 111110 00 000 0111123466677778999999
Q ss_pred hhchHHHHHhccCCC-chhhHHHHHHHHHHHHHHHHHHHH
Q 012508 259 HYNVHSIDNELEDST-HIKGVVRTSLALCSTVYIMTSIFG 297 (462)
Q Consensus 259 ~~~~~~i~~~m~~~~-~~~~~~~~s~~i~~~~y~~~g~~g 297 (462)
.+......+|+|||+ +.+|....+...+.++|.....+.
T Consensus 227 ~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 227 IEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 699999999999999998765444
No 49
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.10 E-value=1e-08 Score=104.45 Aligned_cols=367 Identities=14% Similarity=0.008 Sum_probs=225.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhch-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHh
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMA-LPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKS--VSYGGLMGEAF 115 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~--~sy~~l~~~~~ 115 (462)
+-+|+.+.+...+.-+++++|+|++- ...+.++.|=..-++..++.+.....++..+.|...+.+. .++...+++..
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i 106 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFV 106 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeee
Confidence 45778889999999999999999987 5667888887777777888888889999999987765432 56667789999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccc
Q 012508 116 GKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDS 195 (462)
Q Consensus 116 Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 195 (462)
|+-.++++..-.++.....+.+-+...+..++.... ..+.+... +. .....++..+.++++++.+.-.+-.-+
T Consensus 107 ~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~----~~-~~~~~~~~~fla~~v~in~~gv~~~ge 179 (554)
T KOG1286|consen 107 GESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILV----DT-VNPGGWIPDFLAFILIINLFGVLAYGE 179 (554)
T ss_pred CcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccccc----cC-CCCCccHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999888888888887755430 00000000 00 011122333333333344444444344
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhccC---CCCCCccC--CCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhcc
Q 012508 196 LSFTSALSVALAVAFVVITVGISIVKLISG---GLGMPRIL--PDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELE 270 (462)
Q Consensus 196 l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 270 (462)
.++...+..+++.+-+++..++..-...++ ++...+.+ |..-.+..+.+++.++-...|+|.|...+-...+|-|
T Consensus 180 ~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~k 259 (554)
T KOG1286|consen 180 VEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAK 259 (554)
T ss_pred eeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 444444333322222222111111111111 11111111 1111122367788999999999999999999999999
Q ss_pred CCC-chhhHHHHHHHHHHHHHHHHHHHHHHhc--CC--CchhH-----HhhCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 012508 271 DST-HIKGVVRTSLALCSTVYIMTSIFGFLLF--GD--ATLDD-----VLANFDADLGIPFGSVLSDVVRVSYAAHLMLV 340 (462)
Q Consensus 271 ~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~f--g~--~~~~~-----il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 340 (462)
||+ +.++....++..++++|....+.--+.- .| -..+. ..-..... ....+..+.++...+.+..+
T Consensus 260 NP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~----~~k~~~~ivna~iL~~~~s~ 335 (554)
T KOG1286|consen 260 NPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNA----GAKYLPHIVNAGILIGLLSS 335 (554)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhcc----CccccchhhhHHHHHHHHHH
Confidence 998 6999999999999999998877644322 22 11111 00000000 00223348888899999999
Q ss_pred hhhhhhHHHHHHhhhcCCCCCC----CCCCCceehhhHHHHHHHHHHHHHhcCC-----HHHHHHhhchhhhhHHHHHhh
Q 012508 341 FPVIFYPLRLNLDGLLFPSARP----LGSSNTRFAFISSGLLIIIFLGANFIPS-----IWDAFQFTGATAAVCLGFIFP 411 (462)
Q Consensus 341 ~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~~~ii~l~G~~~~~~l~~ilP 411 (462)
....+++..+.+..+...+.-+ ...++.+-+...++..+...++++.... ++.++++.|.-. .+.+..=
T Consensus 336 ~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i 413 (554)
T KOG1286|consen 336 LNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGT--LFAWTLV 413 (554)
T ss_pred HHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHH--HHHHHHH
Confidence 9999999999988774322111 1112234444444444455555554443 588888876554 5556555
Q ss_pred hHHHHHh
Q 012508 412 AAITLRD 418 (462)
Q Consensus 412 ~~~~~~~ 418 (462)
++.|++.
T Consensus 414 ~~~~i~~ 420 (554)
T KOG1286|consen 414 ALSHLRF 420 (554)
T ss_pred HHHHeee
Confidence 6666653
No 50
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.08 E-value=3.9e-07 Score=93.44 Aligned_cols=248 Identities=9% Similarity=-0.055 Sum_probs=130.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHh--hhhch-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHH
Q 012508 39 GEVNGASFTGAVFNLSTTIVG--AGIMA-LPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEA 114 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG--~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~ 114 (462)
+-+|+.+.++.+..-++. +| +|+.. ++.+..++|-...+...++.+++.......+.|.... ++......-++++
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~ 87 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKL 87 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHh
Confidence 345678888887777774 44 56544 4456667776555666777788888888888887654 4445555556777
Q ss_pred hC----hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhccccc
Q 012508 115 FG----KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACF 190 (462)
Q Consensus 115 ~G----k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 190 (462)
+| +...+++.....+.....+.+.....++.+..+.... +.+ +.+..+.+ ....+...+..+.-+...
T Consensus 88 ~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~----~~~~i~~~~~~~~~~in~ 159 (482)
T TIGR00907 88 APPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT--TPG--REYIPTRW----HIFGIMIGIHLIHALINS 159 (482)
T ss_pred cccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC--CCccccCc----hhhhhHHHHHHHHHHHHH
Confidence 76 4556666666666655555544444444442211100 000 00111111 111111112222223344
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCc-----cCCCCCc-chhhhHHHHhhhhHhHHHhhhhchHH
Q 012508 191 KRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPR-----ILPDVTD-FTSLINLFTVVPVLVTAFICHYNVHS 264 (462)
Q Consensus 191 ~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~ 264 (462)
...|..+.++.+..+..++..+++++...... .++.+..+ ..++... ..+...+..++....|+|.|-+....
T Consensus 160 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~ 238 (482)
T TIGR00907 160 LPTKWLPRITSSAAYWSLLGFLTICITLLACK-SPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAH 238 (482)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhH
Confidence 45555666665544333333222221111111 11111000 0111000 01112344555567799999999999
Q ss_pred HHHhccCCC-chhhHHHHHHHHHHHHHHHHHHH
Q 012508 265 IDNELEDST-HIKGVVRTSLALCSTVYIMTSIF 296 (462)
Q Consensus 265 i~~~m~~~~-~~~~~~~~s~~i~~~~y~~~g~~ 296 (462)
..+|+|||+ +.+|.+..+..+..+++......
T Consensus 239 ~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~ 271 (482)
T TIGR00907 239 MAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIV 271 (482)
T ss_pred HHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 68999999888776655444433
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.98 E-value=2.7e-06 Score=87.45 Aligned_cols=229 Identities=9% Similarity=0.063 Sum_probs=119.0
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHH--HHHHHHHHHHHhh-c-CCCcHHHHHHHHhC
Q 012508 41 VNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLT--DASIELLLRFSRA-G-KSVSYGGLMGEAFG 116 (462)
Q Consensus 41 ~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~--~~t~~~l~~~~~~-~-~~~sy~~l~~~~~G 116 (462)
++|.+.++.++..+....+ +..+| .+++.|+ +.+...+.+.+. .-......|.... + +......-+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 4668888888888777764 56788 4677774 444444444443 3356666666543 2 33334455799999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH---HhhcccccccCCCCccccccccccccCccccchhHHHHHHH--HHHhhcccccc
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYM---IIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTT--LGIFSPLACFK 191 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~---i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~pl~~~~ 191 (462)
++.+++..+..++.......... ......+... +.. ....+...+.. +..+.-+...+
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~-----------~~~------~~~~~~~~i~~l~i~~~~t~~n~~ 140 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF-----------PAL------NEDPIIKFIAALIIFWALAFSQFG 140 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------chh------ccCcHHHHHHHHHHHHHHHHHHHh
Confidence 99888776666665542222211 1111111000 000 01111111111 11222233444
Q ss_pred cccchhhhhHHHHHHHHHHHHH-HHHHhhhhhccCCCCC-C----ccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHH
Q 012508 192 RIDSLSFTSALSVALAVAFVVI-TVGISIVKLISGGLGM-P----RILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSI 265 (462)
Q Consensus 192 ~l~~l~~~s~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 265 (462)
..+..+.++.++.+..++..++ +++........++... + ...|+. .+. .....+....|+|.|-+.....
T Consensus 141 G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~---~~~-~~~~~~~~~~faf~G~E~~a~~ 216 (507)
T TIGR00910 141 GTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDF---SKV-GTLVVFVAFIGAYMGVEASASH 216 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCc---ccc-cHHHHHHHHHHHHhcHHHHHHH
Confidence 5555555554443222222111 1111111112222111 0 111221 111 2233444568999999999999
Q ss_pred HHhccCCC-chhhHHHHHHHHHHHHHHHHHH
Q 012508 266 DNELEDST-HIKGVVRTSLALCSTVYIMTSI 295 (462)
Q Consensus 266 ~~~m~~~~-~~~~~~~~s~~i~~~~y~~~g~ 295 (462)
.+|+|||+ +++|.+..+..++.++|.....
T Consensus 217 a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 217 INELENPGRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999998 6999999999988888876443
No 52
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.97 E-value=6e-06 Score=84.48 Aligned_cols=242 Identities=13% Similarity=0.144 Sum_probs=118.7
Q ss_pred CCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHhh-cCCCcHHHHHHHHhChhHH
Q 012508 43 GASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLT-DASIELLLRFSRA-GKSVSYGGLMGEAFGKWGK 120 (462)
Q Consensus 43 ~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk~~~ 120 (462)
|.+.+..++..+.+.++. -.+|.+ ++.|.. .++..++.+++. .-......|.... ++.......+++.+|++.+
T Consensus 2 ~~~~~~l~~~~~~~v~~~--~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~g 77 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVSL--RGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWG 77 (474)
T ss_pred cccHHHHHHHHHHHHHHh--hcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHH
Confidence 456666666666666554 445755 567753 333333333332 2355555665543 3334444668999999999
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHH--hhcccccccccc
Q 012508 121 VLLQLSVLINNVGVLI---VYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGI--FSPLACFKRIDS 195 (462)
Q Consensus 121 ~~~~~~~~l~~~g~~~---~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pl~~~~~l~~ 195 (462)
+......++....... ++....-...... . ...+. .....+......+++ ..-+...+..|.
T Consensus 78 f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~-----------~-~~~~~-~~~~~~~~~~~~l~~~~~~~~in~~gv~~ 144 (474)
T TIGR03813 78 FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPE-----------A-TVDES-LAGNKLYVLVSVLFVYWLATFIALRGVAA 144 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------c-ccCcc-cccccHHHHHHHHHHHHHHHHHHhcChHH
Confidence 9888777766532111 1111111111000 0 00000 011122211112211 222345556666
Q ss_pred hhhhhHHHHHHH-HHHHHHHHHHhhhhhccCCCC-CCccCCC-CCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCC
Q 012508 196 LSFTSALSVALA-VAFVVITVGISIVKLISGGLG-MPRILPD-VTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDS 272 (462)
Q Consensus 196 l~~~s~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~ 272 (462)
.+.++.+...+. ++..++.++..+.....++.. .+..+.+ ..+..++..+..+. ...|+|.|-+......+|+|||
T Consensus 145 ~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP 223 (474)
T TIGR03813 145 FTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNP 223 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCc
Confidence 656655432221 111112222222221122211 1101000 11111222232222 3578999999999999999999
Q ss_pred C-chhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012508 273 T-HIKGVVRTSLALCSTVYIMTSIFGFLLFG 302 (462)
Q Consensus 273 ~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg 302 (462)
+ +.+|....+..++.++|...........+
T Consensus 224 ~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 224 DKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8 69999999999999999886655444443
No 53
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.77 E-value=9.2e-08 Score=97.92 Aligned_cols=286 Identities=12% Similarity=0.080 Sum_probs=169.1
Q ss_pred HHHHHHhhhhch-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhChhHHHHHHHHHHHH
Q 012508 53 LSTTIVGAGIMA-LPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFGKWGKVLLQLSVLIN 130 (462)
Q Consensus 53 l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk~~~~~~~~~~~l~ 130 (462)
-+.+++|+|++. .+.+..+.|....++..++.+++...+...+.+..++ ++...+.+.+++.+|+.....+.+..++.
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~ 85 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLS 85 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHH
Confidence 467788888776 6678888898777888888899989998888887765 45556777789999999988888887777
Q ss_pred HHHHHHHHHHhhccccccc--CCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHHHHHHHH
Q 012508 131 NVGVLIVYMIIIGDVLSGT--SSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAV 208 (462)
Q Consensus 131 ~~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 208 (462)
............+..++.. .++ ... .+ .....+. .+.. ++..+......+..+.....-....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~-~~~~~~~-~i~~-~~~~~l~~~gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 86 YIAAIAAEATAAGSFLQFWGYFPG----------LPS-TW-VWGILIA-IIFI-LLITLLNLFGVRVSGKIEFILTIIKL 151 (478)
T ss_pred HHHHHHhhhhhhhhhhcccccccc----------ccc-cc-cccchhh-hhhh-hhhhhhhhhhhhccchHHHHHHHHhh
Confidence 7777666666666555332 110 000 11 0000111 1111 11222333344554444433332333
Q ss_pred HHHHHHHHHh-hhhhccCCCCCC-------c---cCCCC---CcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-
Q 012508 209 AFVVITVGIS-IVKLISGGLGMP-------R---ILPDV---TDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST- 273 (462)
Q Consensus 209 ~~~~~~v~~~-~~~~~~~~~~~~-------~---~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~- 273 (462)
+.++..++.. +.....++.... . ..|.- ....++.++..++....++|.|-+.....-+|.|||+
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k 231 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK 231 (478)
T ss_pred hHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence 3333222222 111111111111 0 01100 0122467789999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHh--------hCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q 012508 274 HIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVL--------ANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIF 345 (462)
Q Consensus 274 ~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il--------~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 345 (462)
+.+|....+.....++|.......-...+.+..+..- ....++.+ ..+...+.++....+.+.+..-..
T Consensus 232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~---~~~~~~i~~~~~l~s~~s~~~~~~ 308 (478)
T PF00324_consen 232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSG---GPWLAWIVNAGILISAFSSANASL 308 (478)
T ss_pred hhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcc---cccccceecccchhhhhhhhhhhh
Confidence 6899999999999999998877666555543211111 00001111 123445666666666666665555
Q ss_pred hHHHHHHhhh
Q 012508 346 YPLRLNLDGL 355 (462)
Q Consensus 346 ~~~~~~~~~~ 355 (462)
+...+.+..+
T Consensus 309 ~~~sR~l~am 318 (478)
T PF00324_consen 309 YAASRLLYAM 318 (478)
T ss_pred cccceeehhh
Confidence 5555554433
No 54
>PRK11375 allantoin permease; Provisional
Probab=98.73 E-value=6.5e-05 Score=76.58 Aligned_cols=316 Identities=12% Similarity=0.054 Sum_probs=147.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhHHHHHHHHHH-HHHHHHHHHHHHhhccccc----
Q 012508 73 GLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVL-INNVGVLIVYMIIIGDVLS---- 147 (462)
Q Consensus 73 G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~~~~~~~~~-l~~~g~~~~y~i~~~~~l~---- 147 (462)
++..+++..++..++...-+.+..+...++ ..++.-+.|..||++|..+..+... +..+|=-..-....++.+.
T Consensus 58 s~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~ 136 (484)
T PRK11375 58 STFSIMLAIILSAFFIAAVMVLNGAAGSKY-GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIG 136 (484)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccc-CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544444444443344444444444 5567788999999999877777763 3433322222222333332
Q ss_pred ccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 012508 148 GTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGL 227 (462)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~ 227 (462)
.+.++..+. ++.++........+...++..++..++.. ...+.+++++.++..+..+..+...+...... +.
T Consensus 137 ~i~~~~~~~----~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~---g~ 208 (484)
T PRK11375 137 KIWPGFLTL----GGDFTLLGLSLPGLITFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV---GI 208 (484)
T ss_pred Hhccccccc----ccccccCCCcHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CC
Confidence 222211111 11111111112223322223334445443 44677777776666433332222222222222 11
Q ss_pred CCC-ccCCC--CCcchhhhHHHHhhhhHhHHHh-hhhchHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHHH----HH
Q 012508 228 GMP-RILPD--VTDFTSLINLFTVVPVLVTAFI-CHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFG----FL 299 (462)
Q Consensus 228 ~~~-~~~~~--~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~~~~~~~~~~~s~~i~~~~y~~~g~~g----y~ 299 (462)
... +..|. .+.....+.+..++...+-++. ...+.|...|..|++++-.+....++.+...+...+|++. ..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~ 288 (484)
T PRK11375 209 GPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASI 288 (484)
T ss_pred chhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111 1111123444455544444454 4457899999999988766666666666666555455443 34
Q ss_pred hcCCCc--hhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHhhhcCCCCCCCCCCCceehhhHHH
Q 012508 300 LFGDAT--LDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLV-FPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSG 376 (462)
Q Consensus 300 ~fg~~~--~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (462)
.+|+.. ..+++.++.+ .....++-+...+....+ .....++.-..+.+++ |+.. +.+|-. ++
T Consensus 289 ~~g~~~~dp~~i~~~~~~-------~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~-pk~i----~~~~~~---~i 353 (484)
T PRK11375 289 HYGADTWNVLDIVQRWDS-------LFASFFAVLVILMTTISTNATGNIIPAGYQIAALA-PTKL----TYKNGV---LI 353 (484)
T ss_pred HhCCCcCCHHHHHHHhcc-------hHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhC-cCcc----chhhHH---HH
Confidence 555432 2333333321 122333334444444444 3356677777777665 3221 112211 11
Q ss_pred HHHHHHHHHH--hcCC---HHHHHHhhchhhhhHHHHHhhh
Q 012508 377 LLIIIFLGAN--FIPS---IWDAFQFTGATAAVCLGFIFPA 412 (462)
Q Consensus 377 ~~~~~~~~a~--~~~~---~~~ii~l~G~~~~~~l~~ilP~ 412 (462)
..++..+++. ...+ +.+.+++.|++..++...++-=
T Consensus 354 ~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi~D 394 (484)
T PRK11375 354 ASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAH 394 (484)
T ss_pred HHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122222221 2223 7888888888887777665544
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.66 E-value=3.7e-05 Score=71.56 Aligned_cols=100 Identities=19% Similarity=0.261 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhhhhch---HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhHHHH
Q 012508 46 FTGAVFNLSTTIVGAGIMA---LPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVL 122 (462)
Q Consensus 46 ~~~~~~~l~~~~iG~GiL~---LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~~~ 122 (462)
..+..+..+.+++|+|.=+ +=+-|.+-|+. |....++++++-..+...+.+..++-+..+|.|+-++.+||+...+
T Consensus 5 ~~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki 83 (349)
T COG3949 5 FMRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKI 83 (349)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHH
Confidence 3456677888999999655 33345556665 6666778888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 012508 123 LQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 123 ~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
.+..+.+++++++..-+...++.+
T Consensus 84 ~d~~iif~lf~~~vVM~AGags~~ 107 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAGSLL 107 (349)
T ss_pred HHHHHHHHHHHHHHHHhccchhHH
Confidence 999999999999999888888666
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.61 E-value=8.3e-05 Score=75.25 Aligned_cols=255 Identities=14% Similarity=0.060 Sum_probs=133.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhchHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChh
Q 012508 41 VNGASFTGAVFNLSTTIVGAGIMALPATMKV--LGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKW 118 (462)
Q Consensus 41 ~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~--~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~ 118 (462)
+|+.+.++-+..-++..+...-+........ .++..+++..++..++...-..+......|++ .++..+.|..||++
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~G-l~~~v~sR~~FG~~ 89 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYG-LPFPVLSRASFGIY 89 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhC-CCcchhhhhhhhhh
Confidence 4445666555555555554444443333322 34455555555555554444455555555554 44557789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhh
Q 012508 119 GKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSF 198 (462)
Q Consensus 119 ~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 198 (462)
|..+..++..+...|=...-....++.+.+++.....+.. + .++. .+.......++..++..++......+..++
T Consensus 90 Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~--~--~~~~-~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~ 164 (442)
T TIGR00800 90 GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYL--H--LGNG-MTTLELICFIIFWALVLVFLFFFGYKIRHL 164 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccc--c--cCCc-ccHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 9999999999888888777777777666444322111000 0 0000 011122222222333444344444454555
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCC-CccCCCCCcchhhhHHHHhhhhHh-HHHhhhhchHHHHHhccCCCchh
Q 012508 199 TSALSVALAVAFVVITVGISIVKLISGGLGM-PRILPDVTDFTSLINLFTVVPVLV-TAFICHYNVHSIDNELEDSTHIK 276 (462)
Q Consensus 199 ~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~~m~~~~~~~ 276 (462)
....+.....+.+...+ ....+ .++..+ ....+..+.......+..+++..+ +.-..-.+.+...|.+|++++-.
T Consensus 165 ~~~~a~~~~~~~~~~~~-~~~~~--~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~ 241 (442)
T TIGR00800 165 FEWLAVVPPFAAFGMLI-WALSK--AHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAI 241 (442)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHH--cCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchH
Confidence 55555432222211111 11111 111111 111111122234455666665533 33345567899999999988766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh----cCCC
Q 012508 277 GVVRTSLALCSTVYIMTSIFGFLL----FGDA 304 (462)
Q Consensus 277 ~~~~~s~~i~~~~y~~~g~~gy~~----fg~~ 304 (462)
+....++.........+|+++... +|+.
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 242 WGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 667777777777777787777765 7654
No 57
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.50 E-value=2.3e-05 Score=77.83 Aligned_cols=63 Identities=8% Similarity=-0.123 Sum_probs=50.1
Q ss_pred hhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012508 241 SLINLFTVVPVLVTAFICHYNVHSIDNELEDST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGD 303 (462)
Q Consensus 241 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~ 303 (462)
+.+.+..++-...+++.|-.....+.+|.||++ +.+|.+..+..+..++=..+-+.-...-++
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456666777777899999999999999999999 678988888888887777666666666664
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.49 E-value=0.0011 Score=67.89 Aligned_cols=153 Identities=13% Similarity=0.025 Sum_probs=92.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHhh-hhchHHHHHHHhcHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 012508 39 GEVNGASFTGAVFNLSTTIVGA-GIMALPATMKVLGLVLGIAL---IIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEA 114 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~---l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~ 114 (462)
..+|+.+.+...+.+..+.+|+ ..+..|....+.|+...... .....+...+-...+.+..++.+..|..|..++-
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~R 117 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRAR 117 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 4567788888888887777665 56668876666776321111 1111112222334455566788899999999999
Q ss_pred hChh-HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccc
Q 012508 115 FGKW-GKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRI 193 (462)
Q Consensus 115 ~Gk~-~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 193 (462)
||++ .+.+..+...+..+......+...+..++.++ + -.....+++..+++.-+..+..+
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------------g-----i~~~~~iii~~~iv~iYt~~GGl 178 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------------G-----ISYETGLLIFGITVALYTAFGGF 178 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C-----CCHHHHHHHHHHHHHHHHHhccH
Confidence 9965 45555555555555555555666665553321 1 11222233334455667888899
Q ss_pred cchhhhhHHHHHHHHHH
Q 012508 194 DSLSFTSALSVALAVAF 210 (462)
Q Consensus 194 ~~l~~~s~~~~~~~~~~ 210 (462)
+...+...+..++.++.
T Consensus 179 ~av~~TD~iQ~~i~~~~ 195 (483)
T PRK09442 179 RAVVLTDALQGIVMLVG 195 (483)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888887543333
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.46 E-value=0.00095 Score=68.27 Aligned_cols=152 Identities=12% Similarity=0.056 Sum_probs=95.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhc-hHHHHHHHhcHHHHHHHHH--HHHH-HHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIM-ALPATMKVLGLVLGIALII--FMAF-LTDASIELLLRFSRAGKSVSYGGLMGEA 114 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~--~~~~-~~~~t~~~l~~~~~~~~~~sy~~l~~~~ 114 (462)
...|+.+++...+.+..+.+|++.+ ..|-...+.|+........ ..+. ....-...+.+..++.+..|.+|.-++-
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~R 116 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKAR 116 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 4567789999999999998887654 5777777777632111110 0111 1111233344556778899999999999
Q ss_pred hChh-HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccc
Q 012508 115 FGKW-GKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRI 193 (462)
Q Consensus 115 ~Gk~-~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 193 (462)
||++ .+.+..++..+.+++...+-+...+..+++++ + -..+..+++..+++.-......+
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~--------------g-----i~~~~~iii~~~iv~iYt~~GG~ 177 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT--------------G-----LSYLTALFIFSSSVLIYTTFGGF 177 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------C-----CCHHHHHHHHHHHHHHHHHhhhH
Confidence 9955 46777777777777666666666665553321 1 11223333344455667888889
Q ss_pred cchhhhhHHHHHHHHH
Q 012508 194 DSLSFTSALSVALAVA 209 (462)
Q Consensus 194 ~~l~~~s~~~~~~~~~ 209 (462)
+...+...+..+..++
T Consensus 178 ~av~~td~iQ~~v~~~ 193 (471)
T TIGR02119 178 RAVALTDAIQGIVMFT 193 (471)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888753333
No 60
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.42 E-value=0.00075 Score=66.69 Aligned_cols=277 Identities=13% Similarity=0.111 Sum_probs=147.4
Q ss_pred HhhcCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHH
Q 012508 99 SRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLV 178 (462)
Q Consensus 99 ~~~~~~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (462)
..+++..+. .++++-||++|.++..+.+.+.+.|=...-.+..++...+. + ....++.++
T Consensus 76 Ga~~Glpqm-i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~------------------~~~~~~~il 135 (442)
T COG1457 76 GARTGLPQM-ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T------------------GLPVWAGIL 135 (442)
T ss_pred ccccCCChh-eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C------------------CCcHHHHHH
Confidence 344444444 66899999999999999999999999888888888753110 0 011222222
Q ss_pred HHHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHH-h
Q 012508 179 TTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAF-I 257 (462)
Q Consensus 179 ~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~ 257 (462)
...+++...+.. ..|.++.++..+.......... ..+............+ ...+++..++..+++...-.+ .
T Consensus 136 i~g~l~~l~~if-G~r~l~~l~~~a~~~~~~lf~~----l~~~~~~~~~~~~~~~--~~~~~~~~~fl~a~slv~g~~~s 208 (442)
T COG1457 136 IIGVLMTLVTIF-GYRALHKLERIAVPLLLLLFLY----LLALLFRSKGGLDALW--VKGPTSPLSFLSALSLVIGSFAS 208 (442)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcccccceee--ccCCCcchhHHHHHHHHHHHHHh
Confidence 122122222222 2455555555555322222211 1222222111111111 111234445555555433333 3
Q ss_pred hhhchHHHHHhccCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHhhCCCCCCCCCchhHHHHHHHHHHH
Q 012508 258 CHYNVHSIDNELEDST--HIKGVVRTSLALCSTVYIMTSIFGFLLFGDAT-LDDVLANFDADLGIPFGSVLSDVVRVSYA 334 (462)
Q Consensus 258 ~~~~~~~i~~~m~~~~--~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~-~~~il~n~~~~~~~~~~~~~~~~~~~~~~ 334 (462)
.........|.+|+|+ |.-.....+..+...+-+++|.+...+-|+.. ..+....+. .+...+.+...
T Consensus 209 w~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G---------~~g~~~~lil~ 279 (442)
T COG1457 209 WGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG---------GFGLPAILILV 279 (442)
T ss_pred hhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc---------cHHHHHHHHHH
Confidence 4555778999999998 55555566677777777888999888888766 333333332 13344445555
Q ss_pred HHHHHHhhhhhhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHH--hcCCHHHHHHhhchhhhhHHHHHhhh
Q 012508 335 AHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGAN--FIPSIWDAFQFTGATAAVCLGFIFPA 412 (462)
Q Consensus 335 i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~ii~l~G~~~~~~l~~ilP~ 412 (462)
+....+--..++...-.+.+...+-+ +..|.+...+. ....+.+.. +..+++..+.+.|..........+-=
T Consensus 280 l~~~ttN~~nlYsa~ls~~~i~~~l~-----k~~~~v~~~v~-igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad 353 (442)
T COG1457 280 LGTVTTNANNLYSAGLSFANIIPKLS-----KVTRVVIAGVG-IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIAD 353 (442)
T ss_pred HHHHhcCcHHHHHHHHHHHHhhhhhh-----hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666665543211 11122222211 222222222 45678888888888777666555555
Q ss_pred HHHHH
Q 012508 413 AITLR 417 (462)
Q Consensus 413 ~~~~~ 417 (462)
.+-.|
T Consensus 354 ~~~~r 358 (442)
T COG1457 354 YFIVR 358 (442)
T ss_pred HHHHh
Confidence 44444
No 61
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.41 E-value=0.00026 Score=70.95 Aligned_cols=154 Identities=13% Similarity=0.110 Sum_probs=88.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhh-hchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChh
Q 012508 40 EVNGASFTGAVFNLSTTIVGAG-IMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKW 118 (462)
Q Consensus 40 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~ 118 (462)
..|+.+++...+.+..+.+|++ .+..|....+.|+.. ....+............+.+-.++.+..|.+|.-++-+|++
T Consensus 4 agr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 4 AGRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSK 82 (406)
T ss_dssp --S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCc
Confidence 3567888888899988888764 556888888888643 22223333333444455666666888999999999999998
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 119 G--KVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 119 ~--~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
. +.+..+...+.........+...+..++.+. + . ......++..+++.-......++..
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~--------------g---i--~~~~~~~i~~~i~~iYt~~GGl~av 143 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF--------------G---I--PYNTAILIVGVIVIIYTFFGGLRAV 143 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------T-------HHHHHHHHHHHHHHTTCTT-----
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhcc--------------c---h--hhhHHHHHHHHHHHHhhhhhhHhhh
Confidence 8 6666666666666666777777776663322 1 1 1122223334455557888899999
Q ss_pred hhhhHHHHHHHHHHHHH
Q 012508 197 SFTSALSVALAVAFVVI 213 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~~~ 213 (462)
.+...+..++.++...+
T Consensus 144 ~~td~iQ~~i~~~~~~~ 160 (406)
T PF00474_consen 144 AWTDFIQGVIMIIGAIV 160 (406)
T ss_dssp -SHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 98888887544444333
No 62
>PRK12488 acetate permease; Provisional
Probab=98.41 E-value=0.0028 Score=65.96 Aligned_cols=152 Identities=10% Similarity=0.046 Sum_probs=96.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhh-chHHHHHHHhcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCcHHHHHHHHh
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGAGI-MALPATMKVLGLVLGIALIIFMAFLTD-ASIELLLRFSRAGKSVSYGGLMGEAF 115 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~sy~~l~~~~~ 115 (462)
.-..|+.+++...+.+..+.++++. +..|-...+.|+-. .. ..+...+.. .....+.+-.++.+..|.+|.-++-|
T Consensus 63 ~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~-~~~g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf 140 (549)
T PRK12488 63 YTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LL-YALGVLAGWPIILFLIAERLRNLGKYTFADVVSYRL 140 (549)
T ss_pred eeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HH-HHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHc
Confidence 3457889999999999998887664 66888777778642 11 111111111 12234455556777899999999888
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhccccccccc
Q 012508 116 G-KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRID 194 (462)
Q Consensus 116 G-k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 194 (462)
| |+.|.+..+...+....-....+...+..++.++ + -.++..+++..+++.-.+....++
T Consensus 141 ~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~--------------g-----i~~~~~iii~~~i~~~Yt~~GGm~ 201 (549)
T PRK12488 141 AQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF--------------G-----ISYLYAVVIVGALMVLYVTFGGML 201 (549)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C-----CCHHHHHHHHHHHHHHHHhccchh
Confidence 8 6688877777766666656666666665553221 1 112233333444566678888999
Q ss_pred chhhhhHHHHHHHHHH
Q 012508 195 SLSFTSALSVALAVAF 210 (462)
Q Consensus 195 ~l~~~s~~~~~~~~~~ 210 (462)
...+.+.+..++.+..
T Consensus 202 av~~td~iQ~~im~~~ 217 (549)
T PRK12488 202 ATTWVQIIKAVLLLSG 217 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998887544333
No 63
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.33 E-value=0.0023 Score=65.52 Aligned_cols=147 Identities=13% Similarity=0.030 Sum_probs=102.8
Q ss_pred CCCCCcHHHHHHHHHHHHHh-hhhchHHHHHHHhcHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 012508 40 EVNGASFTGAVFNLSTTIVG-AGIMALPATMKVLGLVLGIALII---FMAFLTDASIELLLRFSRAGKSVSYGGLMGEAF 115 (462)
Q Consensus 40 ~~~~~s~~~~~~~l~~~~iG-~GiL~LP~af~~~G~~~g~i~l~---~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~ 115 (462)
.+|+.+.+-.......+..+ ...+.+|-...+.|+....+... ...+.-.+-...+.+..++++..|.+|.-++-|
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf 115 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARF 115 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHc
Confidence 44555555666666666666 88999999999888665444433 444444555566666666678899999999999
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhccccccccc
Q 012508 116 G-KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRID 194 (462)
Q Consensus 116 G-k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 194 (462)
| |+.|.+..+...+....-+..-+...+..++.... ..+....+....++.....+..++
T Consensus 116 ~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-------------------i~~~~~~~~~~~~v~~Yt~~gG~~ 176 (493)
T COG0591 116 GSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-------------------ISYVTGILIGALIVALYTFLGGLR 176 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------------------CCHHHHHHHHHHHHHHHHHHcChh
Confidence 9 99999999999999999999999999987732221 112222222334556667778888
Q ss_pred chhhhhHHHHH
Q 012508 195 SLSFTSALSVA 205 (462)
Q Consensus 195 ~l~~~s~~~~~ 205 (462)
...+...+.-.
T Consensus 177 av~~Td~iqg~ 187 (493)
T COG0591 177 AVVWTDFIQGL 187 (493)
T ss_pred HHHHHHHHHHH
Confidence 88888777664
No 64
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.32 E-value=0.0036 Score=65.14 Aligned_cols=149 Identities=11% Similarity=0.023 Sum_probs=90.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHh-hhhchHHHHHHHhcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCcHHHHHHHHh
Q 012508 38 GGEVNGASFTGAVFNLSTTIVG-AGIMALPATMKVLGLVLGIALIIFMAFLTD-ASIELLLRFSRAGKSVSYGGLMGEAF 115 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG-~GiL~LP~af~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~sy~~l~~~~~ 115 (462)
.-..|+.+++...+.+..+.++ ...+..|-...+.|+-. ....+ ...+.. .....+.+-.++.+..|.+|..++-|
T Consensus 63 ~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf 140 (549)
T TIGR02711 63 YTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRL 140 (549)
T ss_pred eeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHc
Confidence 3456788888877777777666 45677887777777532 11111 111111 22344555556777899999999888
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhccccccccc
Q 012508 116 G-KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRID 194 (462)
Q Consensus 116 G-k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 194 (462)
| |..+.+..+...+.+..-....+...+..++.++ + -.++..+++..+++........++
T Consensus 141 ~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~--------------g-----i~~~~~iii~~~i~~~Yt~~GGm~ 201 (549)
T TIGR02711 141 KQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF--------------G-----LNYHVAVVLVGILMVMYVLFGGML 201 (549)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------C-----CCHHHHHHHHHHHHHHHHHhhhhH
Confidence 7 5567666665555555545555555555553221 1 112233334444566678888899
Q ss_pred chhhhhHHHHHHH
Q 012508 195 SLSFTSALSVALA 207 (462)
Q Consensus 195 ~l~~~s~~~~~~~ 207 (462)
...+...+..++.
T Consensus 202 av~~td~iQ~~im 214 (549)
T TIGR02711 202 ATTWVQIIKAVLL 214 (549)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887543
No 65
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.27 E-value=0.0024 Score=63.37 Aligned_cols=296 Identities=15% Similarity=0.103 Sum_probs=152.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 012508 72 LGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSS 151 (462)
Q Consensus 72 ~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~ 151 (462)
.++..+++..++..++...-.-+......++ ..++.-+.|..||++|..+..+...+...|=-..-....++.+..+++
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~ 104 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-GLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGG 104 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333333344444 456778899999999999999988888877666666666776654432
Q ss_pred CCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCc
Q 012508 152 SGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPR 231 (462)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 231 (462)
.. ++.. .......+ ..++..+.+. ...+.+++++.++..+..+..+...+.... +.+.....
T Consensus 105 ~~----------~~~~---~~~~~~~i-~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~ 166 (386)
T TIGR02358 105 RL----------FGEE---SPMLWILI-VGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFS---KADLSELW 166 (386)
T ss_pred Hh----------cCCC---chHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhhhc
Confidence 10 0100 11112222 2223333333 346777777777765333333222211221 11111110
Q ss_pred cCCCCCcchhhhHHHHhhhhHh-HHHhhhhchHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHh
Q 012508 232 ILPDVTDFTSLINLFTVVPVLV-TAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVL 310 (462)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~~m~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il 310 (462)
..| .+ ..+..+++... +.-......++..|..|+++|..+....+..+...+-..+|.....+.++....+++
T Consensus 167 ~~~-----~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~ 240 (386)
T TIGR02358 167 NRA-----GD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISIL 240 (386)
T ss_pred CCC-----CC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 011 11 22222332211 112233457899999998888877888888888888889998887777764333333
Q ss_pred hCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHh--c
Q 012508 311 ANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANF--I 388 (462)
Q Consensus 311 ~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~ 388 (462)
.... .....-+...+....+-....++....+.+.. ++.+ ++|.. .+..++..+++.. .
T Consensus 241 ~~~g----------~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~-~~~~-----~~~~~---~i~~ii~~~l~~~~~~ 301 (386)
T TIGR02358 241 AGAG----------LGIPALLIILLSTVTTTFMDIYSAAISTGNLL-PRLK-----VKHLA---IGVGVLGTLIALLFPV 301 (386)
T ss_pred Hhcc----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-Hhhc-----chHHH---HHHHHHHHHHHHHHHH
Confidence 2211 11223344455555556667777777777665 2211 11221 1122222232222 3
Q ss_pred CCHHHHHHhhchhhhhHHHHHhh
Q 012508 389 PSIWDAFQFTGATAAVCLGFIFP 411 (462)
Q Consensus 389 ~~~~~ii~l~G~~~~~~l~~ilP 411 (462)
+.+.+.+++.|....+.....+-
T Consensus 302 ~~f~~FL~~lg~~~~P~~gI~i~ 324 (386)
T TIGR02358 302 DKYENFLLLIGSVFAPLYAVVFV 324 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777776655554443
No 66
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.20 E-value=0.0033 Score=62.98 Aligned_cols=147 Identities=12% Similarity=0.064 Sum_probs=96.1
Q ss_pred CCCCcHHHHHHHHHHHHHhh-hhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhCh-h
Q 012508 41 VNGASFTGAVFNLSTTIVGA-GIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGK-W 118 (462)
Q Consensus 41 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk-~ 118 (462)
.|+.+++...+.+..+.+|+ ..+..|....+.|+.. ....+..............+..++.+..|..|..+.-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence 46677788888887777765 4556888777777532 2222222233334455555666677899999999999998 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhh
Q 012508 119 GKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSF 198 (462)
Q Consensus 119 ~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 198 (462)
.+.+..+...+..+......+...+..++.+.. -..+...++..+++.-+.....++...+
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-------------------i~~~~~~ii~~~i~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITG-------------------LDLYLSLLLLGAITILYTVFGGLKAVVW 141 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------------chHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 677767777777777777777777766643221 1122333334445556788888999999
Q ss_pred hhHHHHHHH
Q 012508 199 TSALSVALA 207 (462)
Q Consensus 199 ~s~~~~~~~ 207 (462)
...+..++.
T Consensus 142 Td~iQ~~i~ 150 (407)
T TIGR00813 142 TDTIQAVIM 150 (407)
T ss_pred HHHHHHHHH
Confidence 998887543
No 67
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.05 E-value=0.014 Score=58.11 Aligned_cols=218 Identities=16% Similarity=0.145 Sum_probs=102.9
Q ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCC-C-CCcchhhhHHHHhhhhHhHHHh-hhhchH
Q 012508 187 LACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILP-D-VTDFTSLINLFTVVPVLVTAFI-CHYNVH 263 (462)
Q Consensus 187 l~~~~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~faf~-~~~~~~ 263 (462)
++..+.++++++...++-.+..+.+...++....+. ++.+.....| . .+.....+.+.......+--|. ..-|+|
T Consensus 184 l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a--~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~ 261 (497)
T COG1953 184 LVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKA--GGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIP 261 (497)
T ss_pred HHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhc--CCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 455666888888887777544444433332222221 2211111222 1 2222333444333322222222 456788
Q ss_pred HHHHhccCCCchhhHHHHHHHHHHHHHH----HHHHHHHHhcCCC--chhHHhhCCCCCCCCCchhHHHHHHHHHHHHHH
Q 012508 264 SIDNELEDSTHIKGVVRTSLALCSTVYI----MTSIFGFLLFGDA--TLDDVLANFDADLGIPFGSVLSDVVRVSYAAHL 337 (462)
Q Consensus 264 ~i~~~m~~~~~~~~~~~~s~~i~~~~y~----~~g~~gy~~fg~~--~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~ 337 (462)
...|.-|+|++-.+.-.++..+.+.+.- .++..++..||+. ...++..++.+. .....++-+.+.+.-
T Consensus 262 DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~------~~~~fl~~l~~~iat 335 (497)
T COG1953 262 DFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSG------FYAAFLAGLTFAVAT 335 (497)
T ss_pred hhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccc------hHHHHHHHHHHHHHH
Confidence 9999999887444434444444444444 4455678889987 456888888754 112112222222222
Q ss_pred -HHHhhhhhhHHHHHHhhhcCCCCCCCCCCCceehhhH--HHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHH
Q 012508 338 -MLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFIS--SGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAI 414 (462)
Q Consensus 338 -~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~ 414 (462)
-+..--...+...-+.+++ |+. .+.+|-.... +.+..+++-.--....+...++..|++.+++...++--.+
T Consensus 336 i~~Ni~aN~vsp~~D~s~l~-Pk~----in~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaDyf 410 (497)
T COG1953 336 ISTNIAANIVSPGYDLSALF-PKY----INIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIADYF 410 (497)
T ss_pred HhhhHHhccCChHHHHHHhc-ccc----cchhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222333333333332 322 2222222111 1111122222222334777777777888877777665555
Q ss_pred HHH
Q 012508 415 TLR 417 (462)
Q Consensus 415 ~~~ 417 (462)
-.+
T Consensus 411 lir 413 (497)
T COG1953 411 LVR 413 (497)
T ss_pred hhh
Confidence 444
No 68
>PRK09395 actP acetate permease; Provisional
Probab=98.04 E-value=0.026 Score=58.90 Aligned_cols=149 Identities=13% Similarity=0.018 Sum_probs=89.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhh-hchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhC-
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAG-IMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFG- 116 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~G- 116 (462)
...|+.+++...+.+..+.++++ .+..|-...+.|+.... ..+...+........+.+-.++.+..|++|..+.-||
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs 144 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLI-YSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQ 144 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCC
Confidence 45677888888888888877754 56688777777864211 1111111111223334555567778999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
|+.+.+..+...+.........+...+..++.++ + -..+..+++..+++.-.+....++..
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~--------------g-----i~~~~~ili~~~i~~iYt~~GGm~av 205 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF--------------G-----LNYHVAVVLVGVLMMVYVLFGGMLAT 205 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C-----CCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 5577776666655555444444555554442221 1 11223333444456667888889998
Q ss_pred hhhhHHHHHHH
Q 012508 197 SFTSALSVALA 207 (462)
Q Consensus 197 ~~~s~~~~~~~ 207 (462)
.+...+..++.
T Consensus 206 ~~TD~iQ~iim 216 (551)
T PRK09395 206 TWVQIIKAVLL 216 (551)
T ss_pred HHHHHHHHHHH
Confidence 88888776433
No 69
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.95 E-value=0.033 Score=58.15 Aligned_cols=149 Identities=11% Similarity=0.013 Sum_probs=92.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhh-hhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhC
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGA-GIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFG 116 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~G 116 (462)
....|+.+++...+.+..+.+++ ..++.|-...+.|+-.-...+ ............+.+-.++.+..|-.|.-++-||
T Consensus 28 ~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~ 106 (552)
T TIGR03648 28 YVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRKFGKYTVPDFIGDRYY 106 (552)
T ss_pred eeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHhC
Confidence 45678899999999888888865 466688766667753211111 1111112234556666678888899999999998
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccc
Q 012508 117 KW-GKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDS 195 (462)
Q Consensus 117 k~-~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 195 (462)
++ .+.+..+...+....-....+...+..++.++ + -..+..+++..+++.-.+....++.
T Consensus 107 s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~--------------g-----i~~~~~iii~~~i~~iYt~~GG~~a 167 (552)
T TIGR03648 107 SNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL--------------E-----VDFETGVFIGMAIVFFYAVLGGMKG 167 (552)
T ss_pred CCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------C-----CCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 54 57766666666555555555555555553221 1 1122233334445666788888999
Q ss_pred hhhhhHHHHHH
Q 012508 196 LSFTSALSVAL 206 (462)
Q Consensus 196 l~~~s~~~~~~ 206 (462)
..+...+..+.
T Consensus 168 V~~TD~iQ~ii 178 (552)
T TIGR03648 168 VTWTQVAQYIV 178 (552)
T ss_pred HHHHHHHHHHH
Confidence 99888888643
No 70
>PRK11017 codB cytosine permease; Provisional
Probab=97.85 E-value=0.041 Score=55.03 Aligned_cols=206 Identities=15% Similarity=0.120 Sum_probs=102.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 012508 72 LGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSS 151 (462)
Q Consensus 72 ~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~ 151 (462)
.++..+++..++..++...-..+......|+ ..++.-++|..||.+|..+..+...+...|=...-....++.+.+..
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~k~-G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~- 116 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGAKT-GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT- 116 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-
Confidence 3444455444444443333333333444444 55777889999999999988888777766544444444444332211
Q ss_pred CCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCc
Q 012508 152 SGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGMPR 231 (462)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 231 (462)
+. ....... + ..++..+..... .+.+++++.++.....+..+...+....+ .++.+...
T Consensus 117 -------------~~---~~~~~~~-i-~~~l~~~~~~~G-~~~i~~~~~~~~p~~~~~~~~~~~~~~~~--~~g~~~~~ 175 (404)
T PRK11017 117 -------------GL---DINLLIV-L-SGLLMTVTAYFG-ISALTILSRIAVPAIALLGGYSVWLAVND--VGGLDGLK 175 (404)
T ss_pred -------------CC---CHHHHHH-H-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhhh
Confidence 10 1111222 1 222333333333 45566666655532222222111111111 11111110
Q ss_pred cCCCCCcchhhhHHHHhhhhHhHH-HhhhhchHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012508 232 ILPDVTDFTSLINLFTVVPVLVTA-FICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDA 304 (462)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~ 304 (462)
..+.. ....+..++...+-. -..-.+.+...|..|++++.......++.+...+-..+|.......|+.
T Consensus 176 ~~~~~----~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 176 AIVPA----EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred cCCCC----CcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 11111 112344444433333 3345678899999988876555566666677777777777776777753
No 71
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.84 E-value=0.037 Score=54.36 Aligned_cols=317 Identities=16% Similarity=0.145 Sum_probs=150.5
Q ss_pred HHHHHHHHhhhhchHHHHHHH-hc--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhHHHHHHHHH
Q 012508 51 FNLSTTIVGAGIMALPATMKV-LG--LVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSV 127 (462)
Q Consensus 51 ~~l~~~~iG~GiL~LP~af~~-~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~~~~~~~~ 127 (462)
+.++.-.+|+|.|-.|-...+ +| |..+.+..++.++..-..... +..+.+ .+|.++.+ ..||+...+....+
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~g-G~~~~l~~-~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVG-GGYDSLSA-RIGKVFGILFTVIL 76 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecC-CCHHHHHH-HhChHHHHHHHHHH
Confidence 356778899999999987764 33 667776666666655444333 223333 68888855 45677776666655
Q ss_pred HHHHHH-------HHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhh
Q 012508 128 LINNVG-------VLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTS 200 (462)
Q Consensus 128 ~l~~~g-------~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 200 (462)
.+...- ..++|-..+...+ ++ +. .........+ +.+-+++.=+++.-+...
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~i~p~~----~~-------------~~-~~~~l~i~si----iff~i~~~l~~~~~k~~~ 134 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMGIAPLL----HS-------------PT-SLLALFIFSL----IFFAVVLLLSLNPSKLID 134 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHHHHhcc----Cc-------------cc-chHHHHHHHH----HHHHHHHHHHcCcccHHH
Confidence 544432 2334444433222 10 00 0011111111 111121111233445555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc--CCCCCCccCCCCCcchhhhHHHHhhhhHhHHHh-------hhhchHHHHH-hcc
Q 012508 201 ALSVALAVAFVVITVGISIVKLIS--GGLGMPRILPDVTDFTSLINLFTVVPVLVTAFI-------CHYNVHSIDN-ELE 270 (462)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-------~~~~~~~i~~-~m~ 270 (462)
.++-+++-..++.++......+.. ++.+.+. .+ ..+.+ .+.+++----+++. +...+-.+.+ |+|
T Consensus 135 ~iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~~-~~-~~~~~---~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~ 209 (378)
T TIGR00796 135 RVGKFLTPALLVTLLALIIKALLWPAGPILAAS-GA-YASQQ---AFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVT 209 (378)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCCCCcCCcc-cc-ccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 555544333333332222222222 2111110 11 10001 12222222223333 5555666666 999
Q ss_pred CCCch-hhHHHHHH---HHHHHHHHHHHHHHHHhcC---CC-chhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhh
Q 012508 271 DSTHI-KGVVRTSL---ALCSTVYIMTSIFGFLLFG---DA-TLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFP 342 (462)
Q Consensus 271 ~~~~~-~~~~~~s~---~i~~~~y~~~g~~gy~~fg---~~-~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 342 (462)
||++. ++....+. .....+|...+..|...-+ +. ..+.++.+..+..- ++.-..+..+...++++.+-.
T Consensus 210 ~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~---G~~G~~ll~i~v~lACLtT~i 286 (378)
T TIGR00796 210 KPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLF---GSLGSFLLGLIITLACLTTAV 286 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHc---chhHHHHHHHHHHHHHHHHHH
Confidence 88844 44444443 4445556555555554322 11 12333333322211 123345666677778887777
Q ss_pred hhhhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHH
Q 012508 343 VIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLR 417 (462)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~ 417 (462)
-......+.+.++. ++ .+.+.+ .+.....++.++. -.+++++++ ....+.++.|..+-+.
T Consensus 287 Gli~~~a~~f~~~~-~k-----~~y~~~---v~~~~l~s~~ia~--~Gl~~Ii~~----~~PvL~~~YP~~i~li 346 (378)
T TIGR00796 287 GLTTACSEYFHKLV-PK-----LSYKTW---VIVFTLFSFIVAN--LGLTQIISI----SIPVLMIIYPLAIVLI 346 (378)
T ss_pred HHHHHHHHHHHHhc-CC-----CCHHHH---HHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 77777777777663 21 111111 1222233334433 377888876 5566667778776554
No 72
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.71 E-value=0.072 Score=53.67 Aligned_cols=43 Identities=7% Similarity=-0.046 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012508 104 SVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 104 ~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
..+..|+.++-+||+..++..+...+...+...+-....+--+
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al 135 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIAL 135 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999998887777777776666666665555333
No 73
>PRK10484 putative transporter; Provisional
Probab=97.65 E-value=0.1 Score=54.03 Aligned_cols=162 Identities=11% Similarity=0.017 Sum_probs=83.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhh-hchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhC
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGAG-IMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFG 116 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~G 116 (462)
.-..|+.+++-..+.+..+.++++ .+..|-...+.|+....- .....+........+..-.++.+..|.+|.-++-||
T Consensus 34 flagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg 112 (523)
T PRK10484 34 FLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAW-EVTAAIALIILALIFLPRYLKSGITTIPDFLEERYD 112 (523)
T ss_pred eecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcC
Confidence 345677888888888877766655 455887666677543111 111111111233334444456778899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-hhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccc
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMI-IIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDS 195 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 195 (462)
++.+.+......+........... ..+..+.+++. . ....+-.. ....+...+...+++........++.
T Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~-------~-~~~~gi~~-~~~~~~~~~~~~~i~~~Yt~~GGl~a 183 (523)
T PRK10484 113 KTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFH-------V-SELLGISY-GAAIWLLVWLIGIIGAIYAVFGGLKA 183 (523)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c-hhhcCCcH-HHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 888776665544433332221111 11111111110 0 00011000 00111111222234466788889999
Q ss_pred hhhhhHHHHHHHHH
Q 012508 196 LSFTSALSVALAVA 209 (462)
Q Consensus 196 l~~~s~~~~~~~~~ 209 (462)
..+...+..++.++
T Consensus 184 V~~TD~iQ~vim~i 197 (523)
T PRK10484 184 VAVSDTINGIGLLI 197 (523)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888754333
No 74
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.63 E-value=0.11 Score=53.61 Aligned_cols=151 Identities=9% Similarity=0.013 Sum_probs=84.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhhc-hHHHHHHHhcHHHHHHHHHHHHHHH-HHHHHHHH-----HHHhhcCCCcHHHH
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGAGIM-ALPATMKVLGLVLGIALIIFMAFLT-DASIELLL-----RFSRAGKSVSYGGL 110 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~~~-~~t~~~l~-----~~~~~~~~~sy~~l 110 (462)
.-..|+.+++...+.+..+.+++..+ +.|-...+.|+-.-.. .+...+. ......+. ...++.+..|.+|.
T Consensus 36 ~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~--~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~ 113 (502)
T PRK15419 36 ILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWI--AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDY 113 (502)
T ss_pred eeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHH
Confidence 34577888888888888877776654 4888777888643111 1111111 11112211 22234578899999
Q ss_pred HHHHhChhH---HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcc
Q 012508 111 MGEAFGKWG---KVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPL 187 (462)
Q Consensus 111 ~~~~~Gk~~---~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 187 (462)
-++-||++. +.+..+...+....-+..-+...+..++.++ + -.....+++..+++...
T Consensus 114 l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------------g-----i~~~~~iii~~~iv~iY 174 (502)
T PRK15419 114 FTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF--------------G-----MSYETALWAGAAATILY 174 (502)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C-----CCHHHHHHHHHHHHHHH
Confidence 999998643 3344444444433333333344444442211 1 11223334444466777
Q ss_pred cccccccchhhhhHHHHHHHHH
Q 012508 188 ACFKRIDSLSFTSALSVALAVA 209 (462)
Q Consensus 188 ~~~~~l~~l~~~s~~~~~~~~~ 209 (462)
.....++...+...+..++.++
T Consensus 175 t~~GGl~aV~~TD~iQ~~imi~ 196 (502)
T PRK15419 175 TFIGGFLAVSWTDTVQASLMIF 196 (502)
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 8889999999999888754333
No 75
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.60 E-value=0.12 Score=53.19 Aligned_cols=149 Identities=14% Similarity=0.087 Sum_probs=81.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhh-hchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH----HHh-hcCCCcHHHHHH
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAG-IMALPATMKVLGLVLGIALIIFMAFLTDASIELLLR----FSR-AGKSVSYGGLMG 112 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~----~~~-~~~~~sy~~l~~ 112 (462)
-..|+.+++...+.+..+.+++. .+..|-...+.|+...... ....+........+.+ ..+ +.+..|.+|.-+
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIA-IGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 35677888888888888777654 4558876667786432221 1111111222233332 222 567888999999
Q ss_pred HHhChhH---HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccc
Q 012508 113 EAFGKWG---KVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLAC 189 (462)
Q Consensus 113 ~~~Gk~~---~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 189 (462)
+-||++. +.+..+...+....-...-+...+..++.++ + -..+..+++..+++.-...
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------------g-----i~~~~~iii~~~i~~~Yt~ 172 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------------G-----LDYKTGLLIGALIIVIYTF 172 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C-----ccHHHHHHHHHHHHHHHHH
Confidence 9999543 3333333333333223333333443332211 1 1122333334445666788
Q ss_pred cccccchhhhhHHHHHHH
Q 012508 190 FKRIDSLSFTSALSVALA 207 (462)
Q Consensus 190 ~~~l~~l~~~s~~~~~~~ 207 (462)
...++...+...+..++.
T Consensus 173 ~GGl~av~~TD~iQ~~i~ 190 (487)
T TIGR02121 173 FGGFLAVSWTDFVQGLLM 190 (487)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 888999999888887533
No 76
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.44 E-value=0.022 Score=55.98 Aligned_cols=300 Identities=14% Similarity=0.132 Sum_probs=139.3
Q ss_pred CcHHHHHHHHHHHHHhhh-hchHHHHHHHhc----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChh
Q 012508 44 ASFTGAVFNLSTTIVGAG-IMALPATMKVLG----LVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKW 118 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G----~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~ 118 (462)
.|-..-+....++.+|-| +.-.||...+-| +++=.+.++..++-....-..+.|-.++....+|.++.. +|+
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~~~ 85 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---KKK 85 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---Ccc
Confidence 566777888889999987 445899666555 222223333333333333344444445555667777765 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCC---ccc-cccccccccCccccchhHHHHHHHHHHhhccccccccc
Q 012508 119 GKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSG---VHH-AGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRID 194 (462)
Q Consensus 119 ~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 194 (462)
++ .......+..+..+.-|.+..+=.+..+.... ..+ .+...+.+..................++.-+...|..+
T Consensus 86 ~~-~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~ 164 (439)
T COG0733 86 WE-WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVK 164 (439)
T ss_pred ch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHH
Confidence 33 23333334444444445554443332211100 000 00001111111110010011111111222223344444
Q ss_pred c-hhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCC---ccCCCCCcchhhhHHHHhhhhHhHHHh-hhhchHHHHHhc
Q 012508 195 S-LSFTSALSVALAVAFVVITVGISIVKLISGGLGMP---RILPDVTDFTSLINLFTVVPVLVTAFI-CHYNVHSIDNEL 269 (462)
Q Consensus 195 ~-l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m 269 (462)
+ ....+.+-+-.-++..++.+ ++....++..+. -..|+++...+...+..++|...|+.. |-..+...-+.+
T Consensus 165 ~GIEk~~kimMP~Lfvl~i~Lv---i~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL 241 (439)
T COG0733 165 KGIEKANKIMMPLLFVLFIILV---IRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYL 241 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4 66666655533333333333 333222222111 124666555555667888999889887 666677788888
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHH---hcCCC----------chhHHhhCCCCCCCCCchhHHHHHHHHHHHHH
Q 012508 270 EDSTHIKGVVRTSLALCSTVYIMTSIFGFL---LFGDA----------TLDDVLANFDADLGIPFGSVLSDVVRVSYAAH 336 (462)
Q Consensus 270 ~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~---~fg~~----------~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~ 336 (462)
+|+++..+........-+.+=++.|+.... .+|.+ +-+++.+.+| .+..+..+.-++..++
T Consensus 242 ~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp------~G~~~~~lFFl~l~fA 315 (439)
T COG0733 242 SKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMP------LGTLFGILFFLLLLFA 315 (439)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCc------hhHHHHHHHHHHHHHH
Confidence 888887765554444444333333332211 12211 2234444444 1244444444455555
Q ss_pred HHHHhhhhhhHHHHHHhhhc
Q 012508 337 LMLVFPVIFYPLRLNLDGLL 356 (462)
Q Consensus 337 ~~~~~p~~~~~~~~~~~~~~ 356 (462)
-++|.--...+....+.+.+
T Consensus 316 alTS~iSmlE~~va~l~~~~ 335 (439)
T COG0733 316 ALTSAISMLEVLVAALIDKF 335 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 77
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.42 E-value=0.014 Score=56.02 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=90.1
Q ss_pred CcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcHHHHHHHHhChhHHHH
Q 012508 44 ASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLR-FSRAGKSVSYGGLMGEAFGKWGKVL 122 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~sy~~l~~~~~Gk~~~~~ 122 (462)
.+-+-.+.+=+.++-|+|...=|-.-.+-||+++.+.+++-+++.---.-+..- ++-|++.+|.+|++++..||+++.+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 455667888899999999999999889999999999988888887777666664 3457889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 012508 123 LQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 123 ~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
..+..++.+.....++....++.+
T Consensus 132 f~~f~~~~lilV~avF~~v~a~~~ 155 (376)
T PF02554_consen 132 FLIFIFFLLILVIAVFADVVANTF 155 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888777
No 78
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.20 E-value=0.29 Score=48.76 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHHHHHhhh-hchHHHHHHHhcHHHHHHHHHHHHHHHH---HH-HHHHHHHHhhcCCCcH-----HHHH
Q 012508 42 NGASFTGAVFNLSTTIVGAG-IMALPATMKVLGLVLGIALIIFMAFLTD---AS-IELLLRFSRAGKSVSY-----GGLM 111 (462)
Q Consensus 42 ~~~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~---~t-~~~l~~~~~~~~~~sy-----~~l~ 111 (462)
++.|.+|+.+..+.+.+|+| ++.+|-+...+| -.++..+.+.+++.. +. ..+..+..+++++.+| .++-
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 45999999999999999998 999999977766 334333333333332 22 2222233334444447 6887
Q ss_pred HHHhChhHHHHHHHH
Q 012508 112 GEAFGKWGKVLLQLS 126 (462)
Q Consensus 112 ~~~~Gk~~~~~~~~~ 126 (462)
+...|||...+..++
T Consensus 124 ~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF 138 (425)
T ss_pred HHhCccHHHHHHHHH
Confidence 777788877776666
No 79
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.19 E-value=0.007 Score=61.34 Aligned_cols=111 Identities=16% Similarity=0.076 Sum_probs=65.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhchHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhCh
Q 012508 40 EVNGASFTGAVFNLSTTIVGAGIMALPATMKV--LGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGK 117 (462)
Q Consensus 40 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~--~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk 117 (462)
++|+.+.++.+..-.+..+....+.+-..... .++..+++..++..++...-.........|+ ..+...++|..||+
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-Gl~~~v~sR~~FG~ 83 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-GLPTMVLSRASFGY 83 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----HHHHTTTTS-T
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCchhcchhccCc
Confidence 45566677777666666665555444443322 2445555555555555444444445555555 44555788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 012508 118 WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSS 151 (462)
Q Consensus 118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~ 151 (462)
+|..+..+...+...|=...-....++.+..+++
T Consensus 84 ~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~ 117 (440)
T PF02133_consen 84 RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLG 117 (440)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998888888777777777777755443
No 80
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.34 Score=48.10 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=37.1
Q ss_pred CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012508 104 SVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 104 ~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
..+..|..++.++|+..++.-+...+....++++-.+..+--+
T Consensus 76 G~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial 118 (416)
T COG1914 76 GKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIAL 118 (416)
T ss_pred CCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999999998888888877555
No 81
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.03 E-value=0.091 Score=53.95 Aligned_cols=94 Identities=9% Similarity=0.058 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHHhChhHHHHHHH
Q 012508 49 AVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA---GKSVSYGGLMGEAFGKWGKVLLQL 125 (462)
Q Consensus 49 ~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~---~~~~sy~~l~~~~~Gk~~~~~~~~ 125 (462)
++.+.++..+ .|-+++...|+|+...++++++...+..+|..-+...+.. .+..-|..+.+ .+|+-.+--...
T Consensus 77 taLsmfSiLl---FLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISR-sLGpEfGGSIGl 152 (945)
T KOG1288|consen 77 TALSMFSILL---FLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISR-SLGPEFGGSIGL 152 (945)
T ss_pred hHHHHHHHHH---HHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEc-ccCcccCCeeee
Confidence 3444444433 4568889999999999988888877777776655544432 33445544433 233333223444
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 012508 126 SVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 126 ~~~l~~~g~~~~y~i~~~~~l 146 (462)
+.++.+...|..++.-+-|-+
T Consensus 153 lFf~anV~~~am~isG~vE~i 173 (945)
T KOG1288|consen 153 LFFVANVFNCAMNISGFVEPI 173 (945)
T ss_pred hhhHHHHhcchhhhhhhhHHH
Confidence 445555555666666655544
No 82
>PRK15015 carbon starvation protein A; Provisional
Probab=96.79 E-value=0.025 Score=58.00 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcHHHHHHHHhChhHHHHHHH
Q 012508 47 TGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLR-FSRAGKSVSYGGLMGEAFGKWGKVLLQL 125 (462)
Q Consensus 47 ~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~sy~~l~~~~~Gk~~~~~~~~ 125 (462)
+-.+-+=+.++-|+|.+.=|..-.+-||.++.+.+++-.++..--.-+..- ++-|++.+|.+|++++..||+++.+..+
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lfli 165 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALV 165 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHHHH
Confidence 345677888999999999999999999999999888777776655555543 3457789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 012508 126 SVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 126 ~~~l~~~g~~~~y~i~~~~~l 146 (462)
..++.+.....++...+.+.+
T Consensus 166 ~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 166 ACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888887666
No 83
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.74 E-value=0.33 Score=47.70 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012508 104 SVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 104 ~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
.++..|..++-+||+..+..-+...+.......+-....+.-+
T Consensus 41 g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al 83 (358)
T PF01566_consen 41 GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIAL 83 (358)
T ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788899999999999888888888888777777666555
No 84
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0062 Score=61.25 Aligned_cols=222 Identities=12% Similarity=0.146 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHHhChhHHHH
Q 012508 46 FTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA---GKSVSYGGLMGEAFGKWGKVL 122 (462)
Q Consensus 46 ~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~---~~~~sy~~l~~~~~Gk~~~~~ 122 (462)
......|+++-|+ .|-++|...|+|+..+++++.++..++..|..--....++ .+...|.-+ .+.+|+..+-.
T Consensus 37 ~~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yfli-s~slg~efggs 112 (643)
T KOG2083|consen 37 FVRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLI-SRSLGPEFGGS 112 (643)
T ss_pred hhhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEE-Eecccccccch
Confidence 3444556666555 5679999999999999988887777766665443333332 233455433 45566666667
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhhhHH
Q 012508 123 LQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFTSAL 202 (462)
Q Consensus 123 ~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 202 (462)
..+...+.+.-.|..|.+..+|++..++... +...... +-.++++++..++..+ .+.-+.++.+
T Consensus 113 igiIy~f~~aVa~am~~vgfaEsv~~l~~~~-----------s~~~i~g----i~~vt~~ill~i~~ag-~~w~~k~q~~ 176 (643)
T KOG2083|consen 113 IGIIYAFANAVATAMYVVGFAESVAHLFETE-----------SKEMIDG----IGSVTVLILLAINVAG-VEWEAKLQIV 176 (643)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc-----------cHHHhcc----hhHHHHHHHHHhhhcc-chhHHHHHHH
Confidence 7777888888889999999999997665421 0000011 1122222333333333 3444444433
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCC-CC-----------CCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhcc
Q 012508 203 SVALAVAFVVITVGISIVKLISGG-LG-----------MPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELE 270 (462)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 270 (462)
-+ ++.++.+.-..+-.++..+ .. ..+.+|+.++. ..++..|+++.=+..|.-.=..+..++|
T Consensus 177 ll---~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgilaG~nisGdL~ 250 (643)
T KOG2083|consen 177 LL---LILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGILAGANISGDLK 250 (643)
T ss_pred HH---HHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhhhccccccCCCC
Confidence 22 2222211111111111111 00 11223333311 3455666766667766666677889999
Q ss_pred CCC-chhhHHHHHHHHHHHHHHHH
Q 012508 271 DST-HIKGVVRTSLALCSTVYIMT 293 (462)
Q Consensus 271 ~~~-~~~~~~~~s~~i~~~~y~~~ 293 (462)
+|+ ..++....+..+.+.+|+.+
T Consensus 251 ~Pq~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 251 DPQKAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred Cchhhcccchhhhhhhhhhhhhhh
Confidence 998 68899999999999999655
No 85
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.67 Score=48.35 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=73.2
Q ss_pred CcHHHHHHHHHHHHHhhhhc-hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHHhChhH
Q 012508 44 ASFTGAVFNLSTTIVGAGIM-ALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA---GKSVSYGGLMGEAFGKWG 119 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~---~~~~sy~~l~~~~~Gk~~ 119 (462)
++......-.+..+.|.-.+ -|-|....+|...+.++.+++++.+..|..-+...... +...+|--+ .+.+|+-.
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmI-SRsLGPEF 193 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMI-SRSLGPEF 193 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEE-ecccCccc
Confidence 44444455556666665543 38889999999999999999999888887776655543 456778666 44566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012508 120 KVLLQLSVLINNVGVLIVYMIIIGDVLS 147 (462)
Q Consensus 120 ~~~~~~~~~l~~~g~~~~y~i~~~~~l~ 147 (462)
+-.+.+|..+-...+...|++-.-+.+-
T Consensus 194 GgAVGlcFYLgtT~AaaMYIlGaVEi~L 221 (1075)
T KOG2082|consen 194 GGAVGLCFYLGTTVAAAMYILGAVEIFL 221 (1075)
T ss_pred cceeeehhhhhhHHHHHHHHHhHHHHHH
Confidence 6677888888777777788777666553
No 86
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.41 E-value=1.2 Score=44.40 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=101.6
Q ss_pred HHHHHHhhcCCCcHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccch
Q 012508 94 LLLRFSRAGKSVSYGGLMGEAFG-KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGR 172 (462)
Q Consensus 94 ~l~~~~~~~~~~sy~~l~~~~~G-k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (462)
++.+-.|+.+..|.+|...+-++ ++.|++..+...+..+.-.++.+.-.+..+.-++ + ..
T Consensus 93 L~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~--------------g-----v~ 153 (529)
T COG4147 93 LIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLL--------------G-----VP 153 (529)
T ss_pred HHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh--------------C-----CC
Confidence 34455677888999988766665 7777777776666666666666666666553322 1 11
Q ss_pred hHHHHHHHHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCC-------------Ccc--CCCCC
Q 012508 173 TFVLLVTTLGIFSPLACFKRIDSLSFTSALSVALAVAFVVITVGISIVKLISGGLGM-------------PRI--LPDVT 237 (462)
Q Consensus 173 ~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------------~~~--~~~~~ 237 (462)
+..-+++..+++.....+..++...|.+.+--++.+....+..+....+.. ++..+ +.. .|...
T Consensus 154 ~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~pGl~ 232 (529)
T COG4147 154 YHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLG-GNPNPLFAEAVTVHPKDDGSDIMEPGLL 232 (529)
T ss_pred ceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcchHHHHHhhcCcccCcccccCCCCc
Confidence 111122333355566788889999999988775444444433333333322 11110 000 11111
Q ss_pred cchhhhHHHHhhhhHhHHHhhhhchHHHHHh-ccCCC--chhhHHHHHHHHHHHHHHHHHHHHHH
Q 012508 238 DFTSLINLFTVVPVLVTAFICHYNVHSIDNE-LEDST--HIKGVVRTSLALCSTVYIMTSIFGFL 299 (462)
Q Consensus 238 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~-m~~~~--~~~~~~~~s~~i~~~~y~~~g~~gy~ 299 (462)
..+..+.++...--..|...+|.+.-. -.-|+ +-|+.+.++...+..+|+..-..|+.
T Consensus 233 ----~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 233 ----YKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred ----ccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233343322223355666765322 22233 67888999999999999987777665
No 87
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.07 E-value=0.56 Score=46.55 Aligned_cols=267 Identities=13% Similarity=0.050 Sum_probs=128.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHH
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLG--LVLGIALIIFMAFLTDASIELLLRFSRA--GKSVSYGGLMGEA 114 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~--~~~~sy~~l~~~~ 114 (462)
..+|.=++++-+..=....++.+.....-+..+.| |.-+++...+.-.+ +...++-..+. .-+.+++-..|..
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~---~~~f~~lns~~G~~yhIsFpv~sR~s 127 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLF---TAIFLVLNSRPGSDYHISFPVLSRSS 127 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHH---HHHHHHHccCCCcccccceeeeeeee
Confidence 45667788888887777788888777777777777 55555543332222 11222222221 1134555666666
Q ss_pred hChhHH---HHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccc
Q 012508 115 FGKWGK---VLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFK 191 (462)
Q Consensus 115 ~Gk~~~---~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 191 (462)
||-++. .+..+...+.-+|+.. -+-++.++-+++..+++....++.++....+..+++.-++.=++-.|..+.|
T Consensus 128 FGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~ 204 (572)
T KOG2466|consen 128 FGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFP 204 (572)
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeecc
Confidence 665543 4444444444444322 1112222212221122222223334433333444444333333555655555
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHhhhhhccC-CCCCCccCC-CCCcchhhhHHHHhhhhHhHHHh-hhhchHHHHHh
Q 012508 192 RIDSLSFTSALSVALAVAFVVITVGISIVKLISG-GLGMPRILP-DVTDFTSLINLFTVVPVLVTAFI-CHYNVHSIDNE 268 (462)
Q Consensus 192 ~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~ 268 (462)
.++++++-....+.........+ ++.+.+. +..+-.+.| +.+.....|.+..++...+-.|. ...|.|...|-
T Consensus 205 -p~~ir~lf~~ka~~t~fA~~g~L---Iw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF 280 (572)
T KOG2466|consen 205 -PYKIRHLFTWKAVLTPFAAFGFL---IWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRF 280 (572)
T ss_pred -HHHhhhHHHHHHhhhHHHHHHHH---HHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhh
Confidence 67777766666543333333333 2322221 111111111 12222233444444432222222 45667888888
Q ss_pred ccCCCchhhHHHH----HHHHHHHHHHHHHHHHHHhcCCCc--hhHHhhCCCC
Q 012508 269 LEDSTHIKGVVRT----SLALCSTVYIMTSIFGFLLFGDAT--LDDVLANFDA 315 (462)
Q Consensus 269 m~~~~~~~~~~~~----s~~i~~~~y~~~g~~gy~~fg~~~--~~~il~n~~~ 315 (462)
-|+|.+....... .+.+...+=.+.+..++..||.+. +-+++.++-+
T Consensus 281 ~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~ 333 (572)
T KOG2466|consen 281 AKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLD 333 (572)
T ss_pred cCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhc
Confidence 8888754443333 344444444555667888999763 3355655543
No 88
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.96 E-value=0.78 Score=46.41 Aligned_cols=103 Identities=22% Similarity=0.229 Sum_probs=86.5
Q ss_pred CcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcHHHHHHHHhChhHHHH
Q 012508 44 ASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLR-FSRAGKSVSYGGLMGEAFGKWGKVL 122 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~sy~~l~~~~~Gk~~~~~ 122 (462)
.+.+-.+-+=+.++-|+|.+.=|---.|.||.++.+.+++-+++..--.-+++- .+-|++..|.+|++++.+|+..+.+
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 455666778888999999999999999999999999888877776666655554 3456788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 012508 123 LQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 123 ~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
..+...+........+.......+
T Consensus 132 ~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 132 FLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888887777666
No 89
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.40 E-value=4 Score=42.37 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHHHhhh-hchHHHHHHHh-c---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 012508 44 ASFTGAVFNLSTTIVGAG-IMALPATMKVL-G---LVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEA 114 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~G-iL~LP~af~~~-G---~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~ 114 (462)
.|-.+-+...++..+|.| +.-.|+-..+- | +++=.+++++.++=..+.-..+.|..++.....|.+++...
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~ 80 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIF 80 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456777888999999998 77899976554 4 23333444444444445555555555555555565665443
No 90
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=94.07 E-value=7 Score=38.94 Aligned_cols=88 Identities=23% Similarity=0.245 Sum_probs=51.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhhch-HHHHHHHhcHHHHHHHHHHHHHHHHHHHH---HHHHHHh-hcCCCcH----H
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGAGIMA-LPATMKVLGLVLGIALIIFMAFLTDASIE---LLLRFSR-AGKSVSY----G 108 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~~~~~t~~---~l~~~~~-~~~~~sy----~ 108 (462)
++++++.|.+|+.+.-+.+.+|+|-.. ..-|..-.| -.++..+.+.+++..-+-+ .|..-.+ +.++.+| .
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 345668999999999999999999765 777776555 3344455555554444333 3333222 2223233 2
Q ss_pred HHHHHHhC-hhHHHHHHHH
Q 012508 109 GLMGEAFG-KWGKVLLQLS 126 (462)
Q Consensus 109 ~l~~~~~G-k~~~~~~~~~ 126 (462)
...++.+| ||.+.+..++
T Consensus 92 yyi~~gl~~k~la~~fai~ 110 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIF 110 (416)
T ss_pred HHHHHHhccchHHHHHHHH
Confidence 34566666 5545444444
No 91
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=93.99 E-value=7.5 Score=38.98 Aligned_cols=329 Identities=13% Similarity=0.056 Sum_probs=151.3
Q ss_pred CcHHHHHHHHHHHHHhhhhchHHHHHHH-hc--HHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcHHHHHHHHhChhH
Q 012508 44 ASFTGAVFNLSTTIVGAGIMALPATMKV-LG--LVLGIALIIFMAFLTDASIELLLR-FSRAGKSVSYGGLMGEAFGKWG 119 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~GiL~LP~af~~-~G--~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~sy~~l~~~~~Gk~~ 119 (462)
......-+.++.-..|+|=|-.|-...+ +| |+.+.+..++.++. .=++.- +..+.+ .++.+++++.- |+.
T Consensus 8 ~~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vg----lPlLgiiava~~~-g~~~~l~~rv~-~~f 81 (439)
T PRK15433 8 RDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVG----LPVLTVVALAKVG-GGVDSLSTPIG-KVA 81 (439)
T ss_pred hHHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHH----HHHHHHHHHhhcC-CCHHHHhhhcc-hHH
Confidence 3567788899999999999999998774 34 77777666555443 222221 122232 58888877765 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhh
Q 012508 120 KVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFT 199 (462)
Q Consensus 120 ~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~ 199 (462)
..+....+.+..- =+..+-..-.. ....+. .+..++ . ....+...++...+..-++ +|.-+.+
T Consensus 82 ~~~f~~~i~l~IG-----P~~aiPRtaav-----sfEm~i-~p~~~~-~-~~~~~ifs~iFF~i~~~l~----l~p~klv 144 (439)
T PRK15433 82 GVLLATVCYLAVG-----PLFATPRTATV-----SFEVGI-APLTGD-S-ALPLFIYSLVYFAIVILVS----LYPGKLL 144 (439)
T ss_pred HHHHHHHHHHHHh-----hccccCCcccc-----chhhee-eccCCc-c-cHHHHHHHHHHHHHHHHHH----cChhhHH
Confidence 4333322222111 11111111100 000011 111111 0 1112222222222223233 3445556
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcc--CCCCCC-ccC---CCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHH-hccCC
Q 012508 200 SALSVALAVAFVVITVGISIVKLIS--GGLGMP-RIL---PDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDN-ELEDS 272 (462)
Q Consensus 200 s~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~-~m~~~ 272 (462)
..+|-+++=+.++..+...+....+ +....+ ..+ |-.....+-.+-..+++...|+- ..+-.+.+ ..+++
T Consensus 145 d~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~---iii~~i~~~G~~~~ 221 (439)
T PRK15433 145 DTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGI---VIVNAARSRGVTEA 221 (439)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHcCCCCH
Confidence 6666544333333222222222221 221111 111 10111122233344555444443 23333333 35566
Q ss_pred Cchhh----HHHHHHHHHHHHHHHHHHHHHHh---cCCC-chhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhh
Q 012508 273 THIKG----VVRTSLALCSTVYIMTSIFGFLL---FGDA-TLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVI 344 (462)
Q Consensus 273 ~~~~~----~~~~s~~i~~~~y~~~g~~gy~~---fg~~-~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 344 (462)
++..| .-.++.....++|...+..|... +++. ..+.++....... .+++...+..+...++++.+---.
T Consensus 222 ~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~---~G~~G~~ll~iiv~lACLTTaIGL 298 (439)
T PRK15433 222 RLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHT---FGGGGSFLLAALIFIACLVTAVGL 298 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 33455666677888888877754 3322 2344444333221 113445566666777777777777
Q ss_pred hhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHH
Q 012508 345 FYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLR 417 (462)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~ 417 (462)
...+.+.+++... . + .|. ..++...+++.+| .-.+++++++ ....+.++.|...-+.
T Consensus 299 i~a~a~~f~~~~~---i----s-Y~~--~v~i~~l~S~~lS--n~G~~~II~~----s~PiL~~iYP~~IvLi 355 (439)
T PRK15433 299 TCACAEFFAQYVP---L----S-YRT--LVFILGGFSMVVS--NLGLSQLIQI----SVPVLTAIYPPCIALV 355 (439)
T ss_pred HHHHHHHHHhhcC---C----c-HHH--HHHHHHHHHHHHH--HhHHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 7777777666531 1 1 111 1122222333332 2246666665 5677778888876665
No 92
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.62 E-value=1.8 Score=42.65 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=54.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012508 72 LGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGT 149 (462)
Q Consensus 72 ~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~ 149 (462)
+|.+.++.+..+...+.+.+..--.+..+. ++..-..+++++.+|+.|+.+..+...+.|+.++++.....+|.+.++
T Consensus 221 ~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~ 299 (378)
T TIGR00796 221 AGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKL 299 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555444444444443222221111 345557899999999999999999999999999999999999988554
No 93
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=91.63 E-value=14 Score=35.90 Aligned_cols=368 Identities=14% Similarity=0.147 Sum_probs=174.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhh-hchHHHHHHHhcHHHHHHHHHHHHH-HHHHHHHHH----HHHHhhcCCCcHHHHHHH
Q 012508 40 EVNGASFTGAVFNLSTTIVGAG-IMALPATMKVLGLVLGIALIIFMAF-LTDASIELL----LRFSRAGKSVSYGGLMGE 113 (462)
Q Consensus 40 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~-~~~~t~~~l----~~~~~~~~~~sy~~l~~~ 113 (462)
..|+.+..-..+....+-+++. .++=|-+-.+.|+.+ +++...=+ ....+...+ .+-+++.+.-+..|+-++
T Consensus 37 gnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~ 114 (473)
T COG4145 37 GNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFA 114 (473)
T ss_pred ccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHH
Confidence 3455665555666666666543 334566666776543 33322222 223333333 334566778888888877
Q ss_pred Hh-ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhccccccc
Q 012508 114 AF-GKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKR 192 (462)
Q Consensus 114 ~~-Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 192 (462)
-+ ++...++..+.+.+...+...+-.+-.+..++. ..+.+ ...- +.+....+........
T Consensus 115 RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~--------------~~gid---Y~tg--L~ifa~~V~iYt~fGG 175 (473)
T COG4145 115 RYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLET--------------ALGID---YTTG--LLIFAVSVAIYTAFGG 175 (473)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------HHCCC---chhh--HHHHHHHHHHHHhhcc
Confidence 74 688889999999999999888888888876632 22211 1111 1222334445566677
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCC---------CCcc-CCCCCcchhhhHHHHhhhhHhHHHhhhhch
Q 012508 193 IDSLSFTSALSVALAVAFVVITVGISIVKLISGGLG---------MPRI-LPDVTDFTSLINLFTVVPVLVTAFICHYNV 262 (462)
Q Consensus 193 l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~ 262 (462)
.|...+.-.+.-...++-.++..+..++. .|+.+ +++. .|.-.+..-...+..++=+ .-++ ++-..
T Consensus 176 FRAvvltD~IQG~vmligtv~Lf~~~i~~--~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwi-lv~~-gvlgl 251 (473)
T COG4145 176 FRAVVLTDTIQGLVMLIGTVVLFVGVIYA--GGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWI-LVCF-GVLGL 251 (473)
T ss_pred eeeeehHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHH-HHHH-HHhcC
Confidence 77766655544422222222222222222 12111 1111 1211111012233333322 1122 33334
Q ss_pred HHH-HH--hccCCCchhhHHHHHHHHHHHHHH---HHHHHHHHhcCCCch-hHHh-----hCCCCCCCCCchhHHHHHHH
Q 012508 263 HSI-DN--ELEDSTHIKGVVRTSLALCSTVYI---MTSIFGFLLFGDATL-DDVL-----ANFDADLGIPFGSVLSDVVR 330 (462)
Q Consensus 263 ~~i-~~--~m~~~~~~~~~~~~s~~i~~~~y~---~~g~~gy~~fg~~~~-~~il-----~n~~~~~~~~~~~~~~~~~~ 330 (462)
|+. .| .-||.+...+...++..++.++-+ ..|.+|.....|-+. |.+. .++|+- .. .+.-
T Consensus 252 P~t~vr~ia~kDskaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~-----~a---gifl 323 (473)
T COG4145 252 PHTAVRCIAFKDSKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPF-----AA---GIFL 323 (473)
T ss_pred cHHHHHHHhccchhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchH-----HH---HHHH
Confidence 442 33 335555555555555554444433 457777777776543 2222 244421 11 1111
Q ss_pred HHHHHHHHHHhhhhhhHHHHH-HhhhcC--CCCCCCCCCCceeh-hhHHHHHHHHHHHHHhcCCH---HHHHHhhchhhh
Q 012508 331 VSYAAHLMLVFPVIFYPLRLN-LDGLLF--PSARPLGSSNTRFA-FISSGLLIIIFLGANFIPSI---WDAFQFTGATAA 403 (462)
Q Consensus 331 ~~~~i~~~~~~p~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~---~~ii~l~G~~~~ 403 (462)
....-+.+.+...+..-.... +.++.. +++.+.+.+.+|.- ..++++..+..+.|+..|++ .+++++ ++
T Consensus 324 ~apmaAiMSTIds~L~~~sstliKdLy~~~~~~~~~E~ki~~is~~~t~i~~~l~~i~al~Pp~~iiwlnlfAf----gg 399 (473)
T COG4145 324 AAPMAAIMSTINSQLLQSSSTLIKDLYLNVRDKLKNERKIKRISMIATLIFGALLLIAALNPPEMIIWLNLFAF----GG 399 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCcceeeeeehhhh----cc
Confidence 122223333333332222222 222221 11222122222322 33455566666777778874 344444 33
Q ss_pred hHHHHHhhhHHHHHhcCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012508 404 VCLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYSD 449 (462)
Q Consensus 404 ~~l~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~s 449 (462)
.-..|..|.++=+.+.+ .++.....-++.|+.+.+.-+...
T Consensus 400 le~~Fl~plvlgLYw~k-----aNa~ga~aSMi~g~~~y~~l~~~~ 440 (473)
T COG4145 400 LEAVFLWPLVLGLYWEK-----ANAAGALASMIVGLVLYVLLAFLG 440 (473)
T ss_pred hhhHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 33446667776666433 334555566666766665554443
No 94
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=90.76 E-value=19 Score=35.81 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHHhChhHHHHHHHHH
Q 012508 51 FNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA---GKSVSYGGLMGEAFGKWGKVLLQLSV 127 (462)
Q Consensus 51 ~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~---~~~~sy~~l~~~~~Gk~~~~~~~~~~ 127 (462)
+....+.+|.|-+. +..++|--.|--++-...+.+. ....+-+...| -...+..|++++.++|+.++...+..
T Consensus 11 ~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~-~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~~~~~~~ 86 (390)
T TIGR01197 11 FLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNI-MALLLQRLCARLGVVTGLDLAEVCREHYPKVPRITLWILA 86 (390)
T ss_pred HHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHHheeecCCCHHHHHHHHCCCchHHHHHHHH
Confidence 33444556666555 3345554444433322222222 22222222222 23678899999999988776555555
Q ss_pred HHHHHHHHHHHHHhhc
Q 012508 128 LINNVGVLIVYMIIIG 143 (462)
Q Consensus 128 ~l~~~g~~~~y~i~~~ 143 (462)
.+...+....-....+
T Consensus 87 ~l~ii~~~~~e~~G~a 102 (390)
T TIGR01197 87 ELAIIATDMAEVIGTA 102 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5544555544444433
No 95
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=90.24 E-value=22 Score=35.71 Aligned_cols=324 Identities=14% Similarity=0.097 Sum_probs=151.0
Q ss_pred CCcHHHHHHHHHHHHHhhhhchHHHHHHHh-c--HHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcHHHHHHHHhChh
Q 012508 43 GASFTGAVFNLSTTIVGAGIMALPATMKVL-G--LVLGIALIIFMAFLTDASIELLLR-FSRAGKSVSYGGLMGEAFGKW 118 (462)
Q Consensus 43 ~~s~~~~~~~l~~~~iG~GiL~LP~af~~~-G--~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~sy~~l~~~~~Gk~ 118 (462)
|......-+.++.-..|+|=|-.|-...+. | |+.+.+..++.++.-- ++.- +..+.+. ++.+++++.- |+
T Consensus 2 ~k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP----~Lgvia~~~~~~-~~~~l~~~v~-~~ 75 (427)
T PF05525_consen 2 KKDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLP----LLGVIAVAKSGG-GIEDLASRVG-PK 75 (427)
T ss_pred cchhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHHhhcCC-CHHHHhcccC-cH
Confidence 345566778899999999999999987743 4 7777777666655422 2222 2222323 8888877765 44
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccc
Q 012508 119 GKVLLQLSVLINNVG-------VLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFK 191 (462)
Q Consensus 119 ~~~~~~~~~~l~~~g-------~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 191 (462)
...+....+.+..-- ..++|-+.+...+ +. +... ......++...+..-+++
T Consensus 76 f~~if~~~i~l~IGP~~aiPRtaa~sfe~~i~p~~--------------~~---~~~~--~~~ifs~iFF~i~~~l~~-- 134 (427)
T PF05525_consen 76 FALIFTILIYLSIGPLFAIPRTAAVSFEMGIAPFF--------------PE---NSNI--SLLIFSIIFFAITYLLSL-- 134 (427)
T ss_pred HHHHHHHHHHHHHHhcccCcchhhhhHHHhhhccC--------------Cc---cccc--chhhhhHHHHHHHHHHHh--
Confidence 443333332221110 1122222222222 10 1111 111111222222222333
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHhhhhhcc--CCCCCCc-cCCC---CCcchhhhHHHHhhhhHhHHHhhhhchHHH
Q 012508 192 RIDSLSFTSALSVALAVAFVVITVGISIVKLIS--GGLGMPR-ILPD---VTDFTSLINLFTVVPVLVTAFICHYNVHSI 265 (462)
Q Consensus 192 ~l~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 265 (462)
+.-+.+..+|-+++=+.++..++..+....+ ++...+. .+.+ .....+-.+-..+++.+.|+ ..+..-
T Consensus 135 --~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg----~iIi~~ 208 (427)
T PF05525_consen 135 --NPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFG----IIIINA 208 (427)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHH----HHHHHH
Confidence 3445555555443333332222222222222 2211111 0110 00111122222333322222 233333
Q ss_pred HHhc--cCCCchh----hHHHHHHHHHHHHHHHHHHHHHHhcC---CCch-hHHhhCCCCCCCCCchhHHHHHHHHHHHH
Q 012508 266 DNEL--EDSTHIK----GVVRTSLALCSTVYIMTSIFGFLLFG---DATL-DDVLANFDADLGIPFGSVLSDVVRVSYAA 335 (462)
Q Consensus 266 ~~~m--~~~~~~~----~~~~~s~~i~~~~y~~~g~~gy~~fg---~~~~-~~il~n~~~~~~~~~~~~~~~~~~~~~~i 335 (462)
.++. +++++.. +.-.++.....++|...+..|...-+ +..+ +.++.+..+..- ++.-..+..+...+
T Consensus 209 i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~---G~~G~~ll~iiv~l 285 (427)
T PF05525_consen 209 IRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLF---GSAGQILLGIIVFL 285 (427)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHc---ChhHHHHHHHHHHH
Confidence 3333 3334333 33445556666777777777766543 2333 445444433211 12334566677777
Q ss_pred HHHHHhhhhhhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHH
Q 012508 336 HLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAIT 415 (462)
Q Consensus 336 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~ 415 (462)
+++.+---....+.+.+++... + .+.++++ +.....++++| .-.+++++++ ....+.++.|...-
T Consensus 286 ACLTTaIGL~~a~a~yf~~~~~--k----isY~~~v---~i~~i~S~~ia--n~Gl~~Ii~~----s~PiL~~iYP~~Iv 350 (427)
T PF05525_consen 286 ACLTTAIGLISACAEYFSELFP--K----ISYKVWV---IIFTIFSFIIA--NLGLDQIIKI----SVPILMFIYPVAIV 350 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--c----cChHHHH---HHHHHHHHHHH--HhCHHHHHHH----HHHHHHHHhHHHHH
Confidence 8887777777788888887653 1 1112221 12223333333 2346677766 56677788898876
Q ss_pred HH
Q 012508 416 LR 417 (462)
Q Consensus 416 ~~ 417 (462)
+.
T Consensus 351 LI 352 (427)
T PF05525_consen 351 LI 352 (427)
T ss_pred HH
Confidence 65
No 96
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=89.95 E-value=26 Score=36.23 Aligned_cols=88 Identities=16% Similarity=0.055 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHHHHhhhh-chHHH-HHHHhcH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChh
Q 012508 44 ASFTGAVFNLSTTIVGAGI-MALPA-TMKVLGL---VLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKW 118 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~Gi-L~LP~-af~~~G~---~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~ 118 (462)
.+-.+.....++..++.|- --.|| .+.+.|+ ++=.+++++.++=..|.-..+.+-++.....-+..++-..-| .
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l~G-i 160 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPALKG-I 160 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHhcC-C
Confidence 4556677777888877664 34787 4555553 566778888888888888888888888777777777776666 3
Q ss_pred HHHHHHHHHHHHHH
Q 012508 119 GKVLLQLSVLINNV 132 (462)
Q Consensus 119 ~~~~~~~~~~l~~~ 132 (462)
|.-++.++++...+
T Consensus 161 gy~i~~i~~~~~~y 174 (629)
T KOG3659|consen 161 GYAICLIAFFVGLY 174 (629)
T ss_pred chhhhHHHHHHHHH
Confidence 44444444444444
No 97
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=89.61 E-value=13 Score=37.35 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=64.6
Q ss_pred HHHHHHHhhhhc---hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCcHHHHHHHHhChhHHHHHHHHH
Q 012508 52 NLSTTIVGAGIM---ALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFS-RAGKSVSYGGLMGEAFGKWGKVLLQLSV 127 (462)
Q Consensus 52 ~l~~~~iG~GiL---~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-~~~~~~sy~~l~~~~~Gk~~~~~~~~~~ 127 (462)
.++++.-.-|.- ..-....++|++.+..+.++-..+.+.+...-.... +.++..-..+++++.+|+.|..+..+..
T Consensus 204 iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv 283 (427)
T PF05525_consen 204 IIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIV 283 (427)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 344444444444 234444556666666555554444444332222211 1223344678899999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccC
Q 012508 128 LINNVGVLIVYMIIIGDVLSGTS 150 (462)
Q Consensus 128 ~l~~~g~~~~y~i~~~~~l~~~~ 150 (462)
.+.|+-++++....++|..+++.
T Consensus 284 ~lACLTTaIGL~~a~a~yf~~~~ 306 (427)
T PF05525_consen 284 FLACLTTAIGLISACAEYFSELF 306 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999995544
No 98
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=85.30 E-value=13 Score=38.63 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=53.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhh-hchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhC
Q 012508 38 GGEVNGASFTGAVFNLSTTIVGAG-IMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFG 116 (462)
Q Consensus 38 ~~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~G 116 (462)
....|+..++...+.++.+.+|++ ++++|--..+.|.-.....+......- ...+...-...+.+..+-.|.-++-||
T Consensus 41 ~l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~-~~~~~f~Pvf~~~~v~~~~eYl~~Rf~ 119 (585)
T KOG2349|consen 41 FLGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVL-LLGWIFIPVFYRLGVTTMYEYLEKRFG 119 (585)
T ss_pred hhcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHH-hhheEEEEEEEecCeeehhHHHHHHhc
Confidence 356678888888888888888765 567888777777543322211111110 001111111123445555566688888
Q ss_pred hhHHHHHHHHHHHHHH
Q 012508 117 KWGKVLLQLSVLINNV 132 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~ 132 (462)
++.+....+...++.+
T Consensus 120 ~~~r~l~~l~f~l~~~ 135 (585)
T KOG2349|consen 120 GRVRYLATLSFILMIF 135 (585)
T ss_pred ccchhhHHHHHHHHHH
Confidence 8877666666555554
No 99
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=80.81 E-value=14 Score=37.08 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=55.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012508 68 TMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA-GKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 68 af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
...++|.+.++.+.++-..+.+.+..--....+. ++..=.....++.+|++++.+..+.+.+.|+-++++-...++|.+
T Consensus 227 ~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f 306 (439)
T PRK15433 227 YTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFF 306 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666555555555543211110001 222234567888999999999999999999999999999999988
Q ss_pred ccc
Q 012508 147 SGT 149 (462)
Q Consensus 147 ~~~ 149 (462)
++.
T Consensus 307 ~~~ 309 (439)
T PRK15433 307 AQY 309 (439)
T ss_pred Hhh
Confidence 443
No 100
>PLN02351 cytochromes b561 family protein
Probab=79.20 E-value=51 Score=30.11 Aligned_cols=96 Identities=19% Similarity=0.112 Sum_probs=60.6
Q ss_pred hhhHHHHhhhhHhHHHhhhhchHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCC
Q 012508 241 SLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIP 320 (462)
Q Consensus 241 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~ 320 (462)
++..++...| |.|..-+. .=+|+..+.+++.+|.+....-...++..++|+.. .|-+. ++...|+-+.
T Consensus 52 n~HP~lMviG---fi~L~geA-ILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nlySL---- 119 (242)
T PLN02351 52 VLHPLLMVIG---FILISGEA-ILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFYSL---- 119 (242)
T ss_pred cccHHHHHHH---HHHHHHHH-HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchhHH----
Confidence 3445555554 33322222 22366677666678888888877777777777777 44322 2233444432
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 012508 321 FGSVLSDVVRVSYAAHLMLVFPVIFYPLR 349 (462)
Q Consensus 321 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~ 349 (462)
++|+-..+-+++.++.+..+....+|..
T Consensus 120 -HSWlGl~tv~Lf~lQwv~Gf~~F~~P~~ 147 (242)
T PLN02351 120 -HSWMGLICVSLFGAQWLTGFMSFWHRGE 147 (242)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4788888888899998888887766643
No 101
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=77.32 E-value=14 Score=36.51 Aligned_cols=103 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHh
Q 012508 65 LPATMKVLGLVLGIALIIFMAFLTDAS---IELLLRFSRAGKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMII 141 (462)
Q Consensus 65 LP~af~~~G~~~g~i~l~~~~~~~~~t---~~~l~~~~~~~~~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~ 141 (462)
.......+|++.++.+.++...+.+.+ ........+ +..=..+..++.||+.|..+...++.+.|.-++++....
T Consensus 222 ~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~n--G~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a 299 (431)
T COG1114 222 IIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAAN--GGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVA 299 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccc--hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhh
Q 012508 142 IGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFS 185 (462)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (462)
++|...+++|+ .+++.|..++...-.++
T Consensus 300 ~aefF~~~~p~----------------~SY~~~v~if~i~sflv 327 (431)
T COG1114 300 CAEFFSKLVPK----------------LSYKTWVIIFTLISFLV 327 (431)
T ss_pred HHHHHHHhccc----------------ccHHHHHHHHHHHHHHH
No 102
>PLN02680 carbon-monoxide oxygenase
Probab=77.00 E-value=48 Score=30.15 Aligned_cols=96 Identities=14% Similarity=0.240 Sum_probs=64.3
Q ss_pred hhhHHHHhhhhHhHHHhhhhchHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCC
Q 012508 241 SLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIP 320 (462)
Q Consensus 241 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~ 320 (462)
++..++...|.+. +.++..+. ++..+.+++.+|.+....-...++..++|+.....+-+.. ++ .|+.+
T Consensus 48 n~HPlLM~~Gfi~--l~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~-~nfyS----- 115 (232)
T PLN02680 48 NVHPVLMVIGLVL--LNGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GI-DNFYS----- 115 (232)
T ss_pred echHHHHHHHHHH--HHHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cc-ccccc-----
Confidence 4555666666433 22333322 5666666778888988888888888888887655554432 22 34433
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012508 321 FGSVLSDVVRVSYAAHLMLVFPVIFYPL 348 (462)
Q Consensus 321 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 348 (462)
.++|+-...-+++.++.+..+..+.+|.
T Consensus 116 lHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 116 LHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3578888888999999999888877774
No 103
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=72.34 E-value=64 Score=33.19 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=39.6
Q ss_pred cCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012508 102 GKSVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGT 149 (462)
Q Consensus 102 ~~~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~ 149 (462)
+......++-....||++......+.++..+..+++-++..+.....+
T Consensus 322 ~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~af 369 (550)
T KOG1289|consen 322 SLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAF 369 (550)
T ss_pred CCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 334567788899999999999999999999999999888888777543
No 104
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=69.25 E-value=1.6e+02 Score=31.29 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHHHhhhhch-HHHHHH-Hhc---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhC
Q 012508 44 ASFTGAVFNLSTTIVGAGIMA-LPATMK-VLG---LVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFG 116 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~GiL~-LP~af~-~~G---~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~G 116 (462)
.+.....+..++..+|-|=.- +|+..- ++| +++=+++++++++=..+--..+.+-..+.+...+..++-..=|
T Consensus 38 ~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pif~G 115 (629)
T KOG3660|consen 38 KSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPIFKG 115 (629)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhChHhcC
Confidence 578888999999999988666 999554 445 4555566666665555555555555555555555444444434
No 105
>TIGR00909 2A0306 amino acid transporter.
Probab=63.64 E-value=1.6e+02 Score=29.34 Aligned_cols=45 Identities=11% Similarity=0.035 Sum_probs=37.8
Q ss_pred CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012508 105 VSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGT 149 (462)
Q Consensus 105 ~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~ 149 (462)
....++.+...|+++..+..+...+..++++.+.....+..+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677788889999999999999999999999988888877544
No 106
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=60.78 E-value=1.3e+02 Score=27.33 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=65.2
Q ss_pred hhhHHHHhhhhHhHHHhhhhchHHHHHhccC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCC
Q 012508 241 SLINLFTVVPVLVTAFICHYNVHSIDNELED-STHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGI 319 (462)
Q Consensus 241 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~ 319 (462)
++..++..+| |-|. ++...=+||--++ .++.+|.+....=++.+...++|+..-+.+-+... ..|+-+
T Consensus 56 nlHP~lMviG---fI~l-~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~NfyS---- 124 (245)
T KOG1619|consen 56 NLHPVLMVIG---FIYL-QGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFYS---- 124 (245)
T ss_pred CcchHHHHHH---HHHh-ccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ccceee----
Confidence 3445555554 3332 2333334555444 34789999999888888888999988887765443 344443
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012508 320 PFGSVLSDVVRVSYAAHLMLVFPVIFYPL 348 (462)
Q Consensus 320 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 348 (462)
.++|+-..+-..|.++....+-.+.+|.
T Consensus 125 -LHSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 125 -LHSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2578888888999999999888877765
No 107
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=58.29 E-value=2.4e+02 Score=29.54 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=28.3
Q ss_pred CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012508 105 VSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSG 148 (462)
Q Consensus 105 ~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~ 148 (462)
..+.+..+...+++++.++.+......+++..+.+...+..+..
T Consensus 299 ~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~a 342 (557)
T TIGR00906 299 APFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYA 342 (557)
T ss_pred cHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445444444477777777777777777777777666665543
No 108
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=57.89 E-value=2.2e+02 Score=28.88 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012508 104 SVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 104 ~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
.....|++++-+.||.+++..++.=+...++-+.-.+..+-.+
T Consensus 88 G~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAl 130 (503)
T KOG1291|consen 88 GKHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIAL 130 (503)
T ss_pred cHHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567889999999999988887777777666665555544333
No 109
>PLN02810 carbon-monoxide oxygenase
Probab=54.72 E-value=1.7e+02 Score=26.61 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=64.3
Q ss_pred hhhHHHHhhhhHhHHHhhhhchHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCC
Q 012508 241 SLINLFTVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIP 320 (462)
Q Consensus 241 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~ 320 (462)
++..++...| |.|..-+.+. .|+..+.+++.+|.+....=...++..++|+...+.+-+.. . ..|+- +
T Consensus 48 N~HPvlMv~G---fi~l~geAIL-~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~-i~nly-----S 115 (231)
T PLN02810 48 NLHPVLMLIG---LIIIGGEAIM-SYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES--G-IANLY-----S 115 (231)
T ss_pred eehHHHHHHH---HHHHhhHHHH-HhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--C-CCcee-----e
Confidence 4555655555 3343333322 33555656678899998888888888888888877775543 2 24443 3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012508 321 FGSVLSDVVRVSYAAHLMLVFPVIFYPL 348 (462)
Q Consensus 321 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 348 (462)
.++|+-..+-..+.++-+..+-...+|.
T Consensus 116 LHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 116 LHSWLGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3588888888899999998887777764
No 110
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=53.93 E-value=41 Score=29.61 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=48.6
Q ss_pred HHHHhhchhhhhHHHHHhhhHHHHHhcCcc----------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012508 393 DAFQFTGATAAVCLGFIFPAAITLRDRHNI----------ATKKDKILCIFMIVLAVFSNVVAIYSDAFALFKK 456 (462)
Q Consensus 393 ~ii~l~G~~~~~~l~~ilP~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~v~g~~~si~~i~~~ 456 (462)
..+-+.|++.+.-+..++|+...+..+++. .+|...+...+.-++|+++.+++...|..++.+.
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEG 118 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 334456777777888889999888866541 3455667888888999999999999998888753
No 111
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=53.53 E-value=1.2e+02 Score=24.54 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=38.4
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcH
Q 012508 41 VNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLV-LGIALIIFMAFLTDASIELLLRFSRAGKSVSY 107 (462)
Q Consensus 41 ~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy 107 (462)
-+..|.-.......-+.+-.-++++|.++- .||+ .+..+.++..+++.+-.--+++-..+.+-.+|
T Consensus 18 ~rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~rlKRGKP~~y 84 (121)
T PF11990_consen 18 FRGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKLLARLKRGKPEGY 84 (121)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCchhH
Confidence 455666655555555555557788998887 6666 56666666666665555444444443333333
No 112
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=49.73 E-value=3e+02 Score=28.05 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=34.2
Q ss_pred CcHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012508 105 VSYGGLMGEAFGK-WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGT 149 (462)
Q Consensus 105 ~sy~~l~~~~~Gk-~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~ 149 (462)
..+.++.+..+|. ++..+..+...+..+++..+++...+..+...
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 334 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAF 334 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888887 77777888888888888888887777776443
No 113
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.67 E-value=1.4e+02 Score=23.78 Aligned_cols=67 Identities=13% Similarity=0.028 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcH
Q 012508 41 VNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSY 107 (462)
Q Consensus 41 ~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy 107 (462)
-+..|.-.......-+....-++++|.+....+|.....+.++..+++.+-.--+++-..+.+-.+|
T Consensus 15 ~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~y 81 (111)
T TIGR03750 15 FRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGY 81 (111)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchH
Confidence 3555555555554444444456778887777788888777776666666555554444444333333
No 114
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=44.88 E-value=2.5e+02 Score=28.51 Aligned_cols=44 Identities=18% Similarity=0.478 Sum_probs=38.4
Q ss_pred cHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012508 106 SYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGT 149 (462)
Q Consensus 106 sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~ 149 (462)
...++.+..+|+++..++.+...+..+++..++....++.+...
T Consensus 265 ~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ 308 (468)
T TIGR03810 265 SMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLM 308 (468)
T ss_pred hHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999999999999999999999999999988887544
No 115
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=44.33 E-value=1.6e+02 Score=30.04 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=29.7
Q ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012508 108 GGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 108 ~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
.+.+++.+|.+. +.+.++..+..+|..-+.+-..+..+
T Consensus 276 v~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~ 313 (479)
T KOG1287|consen 276 VTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLF 313 (479)
T ss_pred HHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 467888999998 99999999999997766555554444
No 116
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=42.54 E-value=2.5e+02 Score=27.88 Aligned_cols=43 Identities=12% Similarity=0.353 Sum_probs=37.3
Q ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012508 107 YGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGT 149 (462)
Q Consensus 107 y~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~ 149 (462)
...+.+...|+++.+++.+...+..+++..+.....+..+..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 302 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAM 302 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhccccc
Confidence 5677788888999999999999999999999998888877554
No 117
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=41.58 E-value=67 Score=26.48 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhCh
Q 012508 45 SFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGK 117 (462)
Q Consensus 45 s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk 117 (462)
|..-+.+.++.+..| ++-.|- .-.++.+..-++..+|++..++-+.+.+...+ +++++-+|+
T Consensus 118 s~rat~~aLi~s~F~--IfDvPV--------fwPILvvYfi~l~f~t~rRqIqHM~KYrY~Pf-digKkky~s 179 (180)
T COG5249 118 STRATGMALIGSYFG--IFDVPV--------FWPILVVYFIFLVFYTARRQIQHMKKYRYNPF-DIGKKKYKS 179 (180)
T ss_pred HHHHHHHHHHHHHHh--hhcchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhhhhcc
Confidence 344455555555554 555553 24556677778889999999888877655554 556655543
No 118
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=39.13 E-value=1.3e+02 Score=32.08 Aligned_cols=60 Identities=13% Similarity=-0.025 Sum_probs=40.7
Q ss_pred HHHhhhhchHHHHH--HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhC
Q 012508 56 TIVGAGIMALPATM--KVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFG 116 (462)
Q Consensus 56 ~~iG~GiL~LP~af--~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~G 116 (462)
.....++......+ .+..++..++.+++..+++..+.+...+... ++...+..+.+..+|
T Consensus 365 ~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~-~P~~~~~~~sqli~g 426 (624)
T PF03169_consen 365 VSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI-NPVSGLNILSQLIFG 426 (624)
T ss_pred HHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC-CcchhhhHHHHHHHH
Confidence 34445566777777 4566777777777777777777777666655 446666777777766
No 119
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=38.43 E-value=4.4e+02 Score=26.68 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=82.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhch-HHHHHHHhcHHHHHHHHHHHHH---HHHHHHHHHHHHHhh-cCCCcHH----H
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMA-LPATMKVLGLVLGIALIIFMAF---LTDASIELLLRFSRA-GKSVSYG----G 109 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~---~~~~t~~~l~~~~~~-~~~~sy~----~ 109 (462)
+++++.|.+|+.+.-+.+.+|+|=.. ..-|..-.| -.++-.+-+.++ .+-|.-..|.+-.++ .+...|. .
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 45678999999999999999999766 777777665 223333333333 444444444444432 2233442 2
Q ss_pred HHHHHhC-hhHHHHHHHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcc
Q 012508 110 LMGEAFG-KWGKVLLQLSVLINNVG-VLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPL 187 (462)
Q Consensus 110 l~~~~~G-k~~~~~~~~~~~l~~~g-~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 187 (462)
..++-+| ||...+..+.+.+.+.. .+......+++.+ ++.+ ....+..-+.. .++.-+
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~--------------~~af-----~~~~~~~gi~l-a~l~~~ 196 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASAL--------------ANAF-----GIPPLVTGIVL-ALLVAL 196 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHH--------------HHhc-----CCcHHHHHHHH-HHHHHH
Confidence 3455555 55555555333333321 3334444444444 2111 12233333322 234445
Q ss_pred cccccccchhhhhHHHH-HHHHHHHHHHHHHh
Q 012508 188 ACFKRIDSLSFTSALSV-ALAVAFVVITVGIS 218 (462)
Q Consensus 188 ~~~~~l~~l~~~s~~~~-~~~~~~~~~~v~~~ 218 (462)
..+..++..+.++..-+ .+++.++...+++.
T Consensus 197 VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii 228 (452)
T COG1115 197 VIFGGIKRIAKVSSKVVPFMAILYVLVALVII 228 (452)
T ss_pred HHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777766664443 35555555444333
No 120
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=37.63 E-value=2.8e+02 Score=24.18 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=50.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012508 272 STHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPL 348 (462)
Q Consensus 272 ~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 348 (462)
+++.+|.+....-...++..++|+.....+-+.. . ..|+- +.++|+-...-..+.++.+..+....+|.
T Consensus 66 ~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~-~~nly-----SlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 66 PKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--H-TANLY-----SLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--C-ccchh-----hHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566788888888888888888888877775543 2 23332 23578888888899999998888877664
No 121
>PHA03048 IMV membrane protein; Provisional
Probab=37.57 E-value=1.4e+02 Score=22.49 Aligned_cols=60 Identities=5% Similarity=0.144 Sum_probs=36.1
Q ss_pred HhhhhHhHHHhhhhchHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Q 012508 247 TVVPVLVTAFICHYNVHSIDNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDD 308 (462)
Q Consensus 247 ~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~ 308 (462)
...|+...+-.|...+.+..+. |++...+|++.+.-. +..+-+.+|++-|..||....++
T Consensus 15 li~GIiLL~~aCIfAfidfsK~-k~~~~~wRalsii~F-Ilgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 15 LIGGIILLAASCIFAFVDFSKN-KATVTVWRALSGIAF-VLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHHhhhhhhcC-CCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCC
Confidence 3456666666677777888777 444444454443322 23334678899999998555443
No 122
>PRK10263 DNA translocase FtsK; Provisional
Probab=37.33 E-value=7.4e+02 Score=29.01 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012508 280 RTSLALCSTVYIMTSIFGFLL 300 (462)
Q Consensus 280 ~~s~~i~~~~y~~~g~~gy~~ 300 (462)
....++.+.+|+.++++.|-.
T Consensus 26 ~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 26 LLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHhCCc
Confidence 344566677788888888754
No 123
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=34.90 E-value=1.1e+02 Score=22.47 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=26.8
Q ss_pred cCCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCc--cccchhhHHHHH
Q 012508 388 IPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHN--IATKKDKILCIF 433 (462)
Q Consensus 388 ~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~--~~~~~~~~~~~~ 433 (462)
..+...+...-+++++.-+ .++|.++|..++++ ..++.++..-+.
T Consensus 11 ~~~~l~vl~~y~~l~~~YL-lVvP~~l~~wm~~RWy~~~~~Er~~~y~ 57 (81)
T PF10716_consen 11 PSDTLLVLLAYAALAGLYL-LVVPLILYFWMNKRWYVMSSFERLFMYF 57 (81)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666544 78899887775544 344556554433
No 124
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=33.46 E-value=3.4e+02 Score=27.62 Aligned_cols=43 Identities=26% Similarity=0.604 Sum_probs=37.1
Q ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012508 107 YGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGT 149 (462)
Q Consensus 107 y~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~ 149 (462)
..++.+..+|+++..++.+...+..+++..++....+..+...
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~am 312 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSA 312 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999988888777544
No 125
>TIGR00930 2a30 K-Cl cotransporter.
Probab=33.04 E-value=7.7e+02 Score=27.94 Aligned_cols=31 Identities=3% Similarity=0.083 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012508 119 GKVLLQLSVLINNVGVLIVYMIIIGDVLSGT 149 (462)
Q Consensus 119 ~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~ 149 (462)
+..++.+..++..+++..+.+...+..+..+
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~Am 416 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQAL 416 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888777544
No 126
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=32.83 E-value=5.7e+02 Score=26.33 Aligned_cols=27 Identities=22% Similarity=0.036 Sum_probs=20.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchH
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMAL 65 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~L 65 (462)
+++++-|..+-...++.+.+|+|++.-
T Consensus 70 d~kPefS~~sW~aMlf~aGig~Givfw 96 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVFW 96 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhcc
Confidence 456668889999999999999998754
No 127
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=32.75 E-value=2.8e+02 Score=28.05 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHhcCC-----HHHHHHhhchhhhhHHHHHhh
Q 012508 372 FISSGLLIIIFLGANFIPS-----IWDAFQFTGATAAVCLGFIFP 411 (462)
Q Consensus 372 ~~~~~~~~~~~~~a~~~~~-----~~~ii~l~G~~~~~~l~~ilP 411 (462)
...+++++...+.++++|+ ....++.+|+.....+..++=
T Consensus 113 ~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~FiliQlIlL 157 (429)
T PF03348_consen 113 FLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIFILIQLILL 157 (429)
T ss_pred HHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999 334456666665555555443
No 128
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=32.68 E-value=3.4e+02 Score=27.29 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=32.4
Q ss_pred CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012508 104 SVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVL 146 (462)
Q Consensus 104 ~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l 146 (462)
...+.++.+..+|+++..++.+...+..+++..++....+..+
T Consensus 259 ~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~ 301 (445)
T PRK10644 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_pred CChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999888888777777777666666555544
No 129
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=30.89 E-value=83 Score=28.51 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhh---------chhhhhHHHHHhhhHHHHHhcC--cc-ccc--hhhHHHHHHHHHHHH
Q 012508 375 SGLLIIIFLGANFIPSIWDAFQFT---------GATAAVCLGFIFPAAITLRDRH--NI-ATK--KDKILCIFMIVLAVF 440 (462)
Q Consensus 375 ~~~~~~~~~~a~~~~~~~~ii~l~---------G~~~~~~l~~ilP~~~~~~~~~--~~-~~~--~~~~~~~~~~~~g~~ 440 (462)
...++..+++|+..+.++-++.++ |+.++..+.++= |....+ ++ ... ..+++.|+++++|.+
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~l 235 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLL 235 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHH
Confidence 344556667777777666666543 666665555543 222111 11 111 247888999999999
Q ss_pred HHHHHHH--HHHHHHHhcCCCC
Q 012508 441 SNVVAIY--SDAFALFKKNASP 460 (462)
Q Consensus 441 ~~v~g~~--~si~~i~~~~~~~ 460 (462)
.++-+++ -.||..-+++++.
T Consensus 236 l~lr~~i~YikVrrm~~~~s~~ 257 (262)
T KOG4812|consen 236 LFLRGFINYIKVRRMEEKYSNQ 257 (262)
T ss_pred HHHHHHHhHHHHhhHHHHHhcc
Confidence 9998886 4566666655543
No 130
>PRK11387 S-methylmethionine transporter; Provisional
Probab=29.87 E-value=4.4e+02 Score=26.78 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=37.5
Q ss_pred CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012508 104 SVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGT 149 (462)
Q Consensus 104 ~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~ 149 (462)
...+.++.+...|+++..++.+...+..+++..+.+...+..+..+
T Consensus 274 ~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ 319 (471)
T PRK11387 274 KSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSL 319 (471)
T ss_pred CChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4567888888888999999999999999998888887777766444
No 131
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=29.76 E-value=2.4e+02 Score=26.18 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 012508 77 GIALIIFMAFLTDASI 92 (462)
Q Consensus 77 g~i~l~~~~~~~~~t~ 92 (462)
|+++-++.+++-..+.
T Consensus 184 G~~LAv~aGvlyGs~f 199 (254)
T PF07857_consen 184 GIILAVFAGVLYGSNF 199 (254)
T ss_pred hHHHHHHHHHHHhccc
Confidence 4445555565544443
No 132
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=29.72 E-value=4.2e+02 Score=26.21 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHhcCC-----HHHHHHhhchhhh
Q 012508 372 FISSGLLIIIFLGANFIPS-----IWDAFQFTGATAA 403 (462)
Q Consensus 372 ~~~~~~~~~~~~~a~~~~~-----~~~ii~l~G~~~~ 403 (462)
...++++....+.++++|+ +...++..|+...
T Consensus 115 ~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~Ga~~F 151 (426)
T KOG2592|consen 115 FFKFILWFGLIVGSFFIPNGFFISFWFYVSVFGAALF 151 (426)
T ss_pred HHHHHHHHHHHHheEEcCCccchhHHHHHHHHhHHHH
Confidence 3466777777888899998 4555555555553
No 133
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=29.60 E-value=3.4e+02 Score=22.71 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=52.4
Q ss_pred HhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q 012508 267 NELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFY 346 (462)
Q Consensus 267 ~~m~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 346 (462)
+..+.+++.+|.+....-...++..++|+..-..+-|... ..|+.+ .++|+-...-+++.++.+..+....+
T Consensus 31 r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~---~~~~~S-----lHSwlGl~t~~L~~lQ~~~G~~~f~~ 102 (144)
T cd08766 31 KTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVG---IPNLYS-----LHSWLGIGTISLFGLQWLFGFVTFWF 102 (144)
T ss_pred hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---cccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455556777888888888888888888866655554321 123332 35788888888899999888877777
Q ss_pred HH
Q 012508 347 PL 348 (462)
Q Consensus 347 ~~ 348 (462)
|.
T Consensus 103 P~ 104 (144)
T cd08766 103 PG 104 (144)
T ss_pred CC
Confidence 75
No 134
>PRK10655 potE putrescine transporter; Provisional
Probab=29.02 E-value=5.4e+02 Score=25.72 Aligned_cols=44 Identities=14% Similarity=0.275 Sum_probs=34.8
Q ss_pred CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012508 105 VSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSG 148 (462)
Q Consensus 105 ~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~ 148 (462)
....+..+..+|+++..++.....+..+++..++....+..+..
T Consensus 258 ~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~ 301 (438)
T PRK10655 258 APFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKS 301 (438)
T ss_pred chHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999888888888888888888887777766543
No 135
>PRK11021 putative transporter; Provisional
Probab=28.79 E-value=4.3e+02 Score=26.17 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=32.7
Q ss_pred CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012508 105 VSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSG 148 (462)
Q Consensus 105 ~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~ 148 (462)
....++.+..+|+++..++.+...+..+++..++....+..+..
T Consensus 246 ~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a 289 (410)
T PRK11021 246 ASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWS 289 (410)
T ss_pred ccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778889998888888877888888777777666666644
No 136
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=28.62 E-value=3.1e+02 Score=21.95 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHHHHhhhhchHHHHHHHh--------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHH
Q 012508 43 GASFTGAVFNLSTTIVGAGIMALPATMKVL--------GLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGL 110 (462)
Q Consensus 43 ~~s~~~~~~~l~~~~iG~GiL~LP~af~~~--------G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l 110 (462)
+..++..+..+.-..+|+..+.+....... ||. -+++-+++.+=..|-..++..+.+..+..+|.++
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~-llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf~~I 112 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWA-LLILGILCFIPGFYHTRIAYYAWRGYKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccch-HHHHHHHHHhccHHHHHHHHHHHcCCCCCCHhhC
Confidence 345666666777777777776666544322 222 1222223334456677777778888888888765
No 137
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=28.59 E-value=1.5e+02 Score=24.96 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=36.7
Q ss_pred hchhhhhHHHHHhhhHHHHHhcC-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012508 398 TGATAAVCLGFIFPAAITLRDRH-NIATKKDKILCIFMIVLAVFSNVVAIYSDAFALFKK 456 (462)
Q Consensus 398 ~G~~~~~~l~~ilP~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~i~~~ 456 (462)
.|+-++....|+.|.+.+....+ .+..+..+--..+.+++|+..++.++..+-+..+++
T Consensus 35 ~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~k 94 (152)
T PF07954_consen 35 LGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYNK 94 (152)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667778889887765111 111111113344568899999999998888777754
No 138
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=28.35 E-value=87 Score=23.54 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=23.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHH
Q 012508 20 VDENSPLLPTRREGDAGYGGEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLV 75 (462)
Q Consensus 20 ~~e~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~ 75 (462)
++|+.+..++..+..+.+++..+| .+.++.+.+-+..+=+.....|++
T Consensus 29 q~E~g~vv~Gt~~sAP~~~~l~rk--------~~~TTiiaavi~~~~~~~~~~g~i 76 (85)
T PF07330_consen 29 QDEAGEVVPGTDPSAPANPRLKRK--------ALITTIIAAVIFAIIYLIIVSGWI 76 (85)
T ss_pred cCcCCCcCCCCCCCCCCCchHHHH--------HHHHHHHHHHHHHHHHHHHHhccc
Confidence 333344445555444433444444 344455555555555555555543
No 139
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=28.03 E-value=3.7e+02 Score=22.73 Aligned_cols=68 Identities=16% Similarity=0.315 Sum_probs=50.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012508 273 THIKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPL 348 (462)
Q Consensus 273 ~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 348 (462)
++.+|.+....-...++..++|+..-..+-+..+ ..|+.+ .++|+-....+++.++.+..+..+.+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~---~~~fyS-----lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAKN---IPNMYS-----LHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHccccC---CCcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4677888888888888888888887766654321 134433 3578888888999999999999888885
No 140
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=27.58 E-value=2.7e+02 Score=28.78 Aligned_cols=100 Identities=18% Similarity=0.117 Sum_probs=52.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHH----HHHHh---c--------HHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPA----TMKVL---G--------LVLGIALIIFMAFLTDASIELLLRFSR--- 100 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~----af~~~---G--------~~~g~i~l~~~~~~~~~t~~~l~~~~~--- 100 (462)
+++++-+..+-++-++.+-+|.|++..+- ...+. | .-.+....++-+.+..++.+.+.-..-
T Consensus 83 ~~~PEfs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf 162 (537)
T COG1292 83 DEKPEFSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYF 162 (537)
T ss_pred CCCCCcchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhee
Confidence 34455777788888899999998875421 11110 1 112344444555555555555554321
Q ss_pred ---hcCCCc-----HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q 012508 101 ---AGKSVS-----YGGLMGEAFGKWGKVLLQLSVLINNVGVLIVY 138 (462)
Q Consensus 101 ---~~~~~s-----y~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y 138 (462)
|..... |+-+.++.-|+.|+.+=.+.++-+.+|..++.
T Consensus 163 ~~rk~~pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsL 208 (537)
T COG1292 163 HYRKGLPLLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSL 208 (537)
T ss_pred eEecCCCchhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHH
Confidence 222222 45555555566666555555555555544433
No 141
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=27.46 E-value=2.7e+02 Score=20.91 Aligned_cols=57 Identities=11% Similarity=0.251 Sum_probs=33.8
Q ss_pred hhhhHhHHHhhhhchHHHHHhccCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 012508 248 VVPVLVTAFICHYNVHSIDNELEDST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGDAT 305 (462)
Q Consensus 248 ~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~ 305 (462)
..|+...+-.|...+.+..+.-.+|. +.+|++.+.-. +..+-+.+|++.|..||-..
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~F-IlG~vl~lGilifs~y~~C~ 73 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCF-IVGAVLLLGLFVFSMYRKCS 73 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHH-HHHHHHHHHHHHHHHhcccC
Confidence 34555666666666677777665555 44454443222 23333677899999998433
No 142
>PF14256 YwiC: YwiC-like protein
Probab=25.01 E-value=3.8e+02 Score=21.85 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=23.5
Q ss_pred HhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCc
Q 012508 386 NFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHN 421 (462)
Q Consensus 386 ~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~ 421 (462)
..-|....+.-+.+-++.-. .-.|...++|.+++
T Consensus 20 ~~~~~w~~~~L~~aw~~~yl--~~~p~~~~~k~r~~ 53 (129)
T PF14256_consen 20 AGGPSWAHLPLLLAWLFGYL--AFYPFLLWLKQRRR 53 (129)
T ss_pred HhcccHHHHHHHHHHHHHHH--HHHHHHHHHhcccc
Confidence 55677777777766666433 44699999997663
No 143
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=24.84 E-value=4.3e+02 Score=22.34 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=18.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 012508 274 HIKGVVRTSLALCSTVYIMTSIFGF 298 (462)
Q Consensus 274 ~~~~~~~~s~~i~~~~y~~~g~~gy 298 (462)
|.++-+.........+|+.+++..|
T Consensus 2 r~~~~i~~~~l~~~~~fl~~al~sy 26 (171)
T PF13491_consen 2 RRKREILGIALLLLALFLLLALISY 26 (171)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566666667777788888888888
No 144
>PHA03048 IMV membrane protein; Provisional
Probab=23.88 E-value=3.2e+02 Score=20.60 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=30.2
Q ss_pred chhhhhHHHHHhhhHHHHHhcCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012508 399 GATAAVCLGFIFPAAITLRDRHNIA--TKKDKILCIFMIVLAVFSNVVAIYSDAFA 452 (462)
Q Consensus 399 G~~~~~~l~~ilP~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~v~g~~~si~~ 452 (462)
|.+.+.++..+.-++|.+..+.|.+ ....|..+.+..++|.+..+--...+.+.
T Consensus 13 ~vli~GIiLL~~aCIfAfidfsK~k~~~~~wRalsii~FIlgivl~lG~~ifsmy~ 68 (93)
T PHA03048 13 TALIGGIILLAASCIFAFVDFSKNKATVTVWRALSGIAFVLGIVMTIGMLIYSMWG 68 (93)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666677777766443321 23345666666666766665555555544
No 145
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.71 E-value=3.2e+02 Score=20.52 Aligned_cols=56 Identities=7% Similarity=0.042 Sum_probs=33.3
Q ss_pred hhchhhhhHHHHHhhhHHHHHhcCccc----cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012508 397 FTGATAAVCLGFIFPAAITLRDRHNIA----TKKDKILCIFMIVLAVFSNVVAIYSDAFA 452 (462)
Q Consensus 397 l~G~~~~~~l~~ilP~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~v~g~~~si~~ 452 (462)
+.|.+.+.++..+.-++|.+..+.|.. .+..|..+++..++|.+..+--...+.+.
T Consensus 11 ~s~vli~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 11 YSGVLICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666667777888777443321 23445666666777777665555555444
No 146
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=23.58 E-value=3.7e+02 Score=21.25 Aligned_cols=44 Identities=7% Similarity=0.088 Sum_probs=20.4
Q ss_pred HHHHHhhhHHHHHhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012508 405 CLGFIFPAAITLRDRHNIATKKDKILCIFMIVLAVFSNVVAIYSDAFA 452 (462)
Q Consensus 405 ~l~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~ 452 (462)
....++=..+.+....++..||+ ...++++++..+.-+..|++=
T Consensus 55 ~vQi~VqL~~FLHl~~~~~~~wn----~~al~Ft~~i~~iiv~GSlWI 98 (109)
T PRK10582 55 VVQILVHLVCFLHMNTKSDEGWN----MTAFVFTVLIIAILVVGSIWI 98 (109)
T ss_pred HHHHHHHHHHHhcccCCcccchH----HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433334444 344555555555555555543
No 147
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=23.09 E-value=78 Score=32.33 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=38.8
Q ss_pred cHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 012508 106 SYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTS 150 (462)
Q Consensus 106 sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~ 150 (462)
.+.+..+...+++...++++......+++..+.+...+..+..+.
T Consensus 275 p~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama 319 (478)
T PF00324_consen 275 PFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMA 319 (478)
T ss_pred chhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhh
Confidence 567778888889999999999999999999999999888886653
No 148
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=22.96 E-value=2.8e+02 Score=28.62 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=26.6
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012508 64 ALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRA 101 (462)
Q Consensus 64 ~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~ 101 (462)
+.|.+- +.=|+...+++++++++++++...+-++.+.
T Consensus 472 s~pKan-K~LWIsvAliVLLAaLlSfLtg~~fq~~vda 508 (538)
T PF05781_consen 472 SFPKAN-KVLWISVALIVLLAALLSFLTGLFFQRCVDA 508 (538)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccchhcc
Confidence 356555 4446667788889999999998777777653
No 149
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=20.93 E-value=3.2e+02 Score=22.15 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHhcHHH
Q 012508 46 FTGAVFNLSTTIVGAGIMALPATMKVLGLVL 76 (462)
Q Consensus 46 ~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~ 76 (462)
..+-....+++.+=.+-+++|-.++++|.+.
T Consensus 65 ~~idlA~FlTg~~vvs~falPiVl~ha~lI~ 95 (131)
T KOG2174|consen 65 ACIDLAKFLTGAIVVSAFALPIVLAHAGLIG 95 (131)
T ss_pred HHHHHHHHHhcchhhhhhhhHHHHHHhhHhh
Confidence 5555666667777788899999999999774
No 150
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=20.84 E-value=3.3e+02 Score=24.23 Aligned_cols=30 Identities=0% Similarity=-0.204 Sum_probs=15.7
Q ss_pred CCCCCCCcCCCCCccccCCCCCCCCCCCCC
Q 012508 4 GSITPKDKHSRRGKKVVDENSPLLPTRREG 33 (462)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 33 (462)
+.+++-+.++.|..-.-+++.+.-++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (200)
T PF05473_consen 3 TPDQQAPLKPTKSSLSFTVQEITEDEPNLD 32 (200)
T ss_pred CccccCccccccccccccccCCCCCCcccc
Confidence 345555556666655555555554444333
No 151
>COG4709 Predicted membrane protein [Function unknown]
Probab=20.24 E-value=6e+02 Score=22.33 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHHHHHhhhhchHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012508 42 NGASFTGAVFNLSTTIVGAGIMALPATMKV-LGLVLGIALIIFMAFLTDASIELLLRFSR 100 (462)
Q Consensus 42 ~~~s~~~~~~~l~~~~iG~GiL~LP~af~~-~G~~~g~i~l~~~~~~~~~t~~~l~~~~~ 100 (462)
...+..+++.++. |.|++..|...-- .|.+..++.+++.++.-.++.+.+.-+.-
T Consensus 74 ~~~n~~~aii~~~----~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~agi 129 (195)
T COG4709 74 TQKNVRRAIIALI----GLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAGI 129 (195)
T ss_pred cccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666554 4555555554321 12333333333334444444555554443
No 152
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=20.00 E-value=7.5e+02 Score=24.79 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=74.7
Q ss_pred hHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHH
Q 012508 307 DDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGAN 386 (462)
Q Consensus 307 ~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 386 (462)
++.+.+++.. ......+........+..+|+... +++.+.+...++......+..-....-........+---
T Consensus 271 ~~~l~~~~~~------~vr~~~~~~~~l~~pi~~fPlr~~-l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p 343 (411)
T KOG1305|consen 271 NNLLRSFPLL------CVRLRIAVAVLLTFPIVLFPLRMN-LDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVP 343 (411)
T ss_pred chhHhhhhHH------HHHHHHHHHHHHHHHHHhchHHHH-HHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhc
Confidence 4445555543 455566667777888999999988 666666665543222223332222222223333444445
Q ss_pred hcCCHHHHHHhhchhhhhHHHHHhhhHHHHH--hcCccccchhhHHHHHHHHHHHHHHHHHHH
Q 012508 387 FIPSIWDAFQFTGATAAVCLGFIFPAAITLR--DRHNIATKKDKILCIFMIVLAVFSNVVAIY 447 (462)
Q Consensus 387 ~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~ 447 (462)
.+.++-.+++.+++....++.--.=.+.-.| .+++...+..+++...+.++|+...+....
T Consensus 344 ~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 406 (411)
T KOG1305|consen 344 SIGTIFGFVGATSSTSISFILPALYYLKASKKKSREPLGALIFLILGVLLSIIGVAVMIYDLL 406 (411)
T ss_pred cHHHHHHHhhhhhhhhhHHHHHHHhhheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666677777665555544444444444 333333445566777777777777665443
Done!