Query 012508
Match_columns 462
No_of_seqs 126 out of 1187
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 9.8E-16 3.4E-20 153.9 29.2 358 39-421 5-378 (445)
2 3gia_A Uncharacterized protein 99.6 1.7E-12 5.8E-17 130.2 32.5 347 40-421 4-368 (444)
3 4djk_A Probable glutamate/gamm 99.5 1.2E-10 4E-15 119.0 32.9 293 39-352 8-316 (511)
4 2jln_A MHP1; hydantoin, transp 98.8 4.1E-06 1.4E-10 84.7 28.9 334 41-410 24-378 (501)
5 3dh4_A Sodium/glucose cotransp 98.3 0.0045 1.5E-07 62.8 34.4 150 40-209 18-169 (530)
6 2xq2_A Sodium/glucose cotransp 97.8 0.019 6.6E-07 59.0 28.6 153 39-211 46-200 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.0 0.37 1.3E-05 48.2 29.1 238 44-285 9-285 (519)
8 3l1l_A Arginine/agmatine antip 61.1 53 0.0018 31.5 10.9 45 104-148 259-303 (445)
9 4djk_A Probable glutamate/gamm 48.7 1.9E+02 0.0066 28.0 12.8 32 117-148 287-318 (511)
10 3gia_A Uncharacterized protein 40.9 88 0.003 29.8 8.7 44 104-147 257-300 (444)
11 4ain_A Glycine betaine transpo 32.7 39 0.0013 33.6 4.4 105 39-143 91-219 (539)
12 2wsw_A BCCT family betaine/car 28.0 1.9E+02 0.0064 28.5 8.4 164 40-215 87-279 (509)
13 3tx3_A Uncharacterized protein 27.9 3.1E+02 0.011 24.0 11.8 36 266-302 21-56 (249)
14 4b4a_A TATC, SEC-independent p 22.0 4E+02 0.014 23.3 12.3 94 323-420 59-176 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.74 E-value=9.8e-16 Score=153.94 Aligned_cols=358 Identities=11% Similarity=-0.001 Sum_probs=213.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHhCh
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAG-KSVSYGGLMGEAFGK 117 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~sy~~l~~~~~Gk 117 (462)
+.+|+.+.++.++..+++++|+|++.+|....+.|.. +++..++.++........+.|...+. +.....+..++.+||
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 83 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGP 83 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCC
Confidence 3567899999999999999999999999998888864 77888888888888888888877654 455777888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchh
Q 012508 118 WGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLS 197 (462)
Q Consensus 118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 197 (462)
+.+++..+..++........+....++.+..+++.. ++. ...+. ....++++.-+...+..|...
T Consensus 84 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~-~~~~~~~~~~~in~~g~~~~~ 148 (445)
T 3l1l_A 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------KDP---WVLTI-TCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----------GSH---HHHHH-HHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----------ccc---HHHHH-HHHHHHHHHHHHHHhchHHHH
Confidence 999999999999888888888888888875543310 000 11111 121222222334445566666
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-chh
Q 012508 198 FTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-HIK 276 (462)
Q Consensus 198 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~ 276 (462)
.++.+.....++.+++.++........++.. +...| ....++.++..++....|+|.|.+......+|+|||+ +.+
T Consensus 149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip 225 (445)
T 3l1l_A 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYM-AAWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVP 225 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCC-CC-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhcc-cccCc--cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccc
Confidence 6665555433333332222222111111110 01111 1112355678889999999999999999999999996 789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCch----hHHhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 012508 277 GVVRTSLALCSTVYIMTSIFGFLLFGDATL----DDVLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFPVIFYPLRLNL 352 (462)
Q Consensus 277 ~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~----~~il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 352 (462)
|....+..++.++|...........+.+.. .....-+.+.. .++...+..+...+..+.+.....+...+.+
T Consensus 226 ~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 301 (445)
T 3l1l_A 226 IATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH----CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877776654211 01110000000 0233445555666666666666656655554
Q ss_pred hhhc----CCCCCCCCCCCceehhhHHHHHHHHHHHHHh--c----CCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCc
Q 012508 353 DGLL----FPSARPLGSSNTRFAFISSGLLIIIFLGANF--I----PSIWDAFQFTGATAAVCLGFIFPAAITLRDRHN 421 (462)
Q Consensus 353 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~----~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~ 421 (462)
..+- .|+.-.+..++.......++..+++.++.+. . ..++.+.++.+ ....+.|.++.+.+++.+++
T Consensus 302 ~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~ 378 (445)
T 3l1l_A 302 KAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHG 378 (445)
T ss_dssp HHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 4432 1211000011111111111112222222222 1 34566666654 34477888999888886554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.60 E-value=1.7e-12 Score=130.21 Aligned_cols=347 Identities=9% Similarity=0.027 Sum_probs=203.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhchHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHhCh
Q 012508 40 EVNGASFTGAVFNLSTTIVGAGIMALPA-TMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAG-KSVSYGGLMGEAFGK 117 (462)
Q Consensus 40 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~sy~~l~~~~~Gk 117 (462)
++|+.+.++.++..+++++|+|++.+|. +...+|- .+++..++.+++...+...+.|...+. +.....+..++.+||
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 4678999999999999999999999775 4556676 677788888888888889999887654 445566788999998
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhH-HHHHHHHHHhhcccccccccc
Q 012508 118 WG-KVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTF-VLLVTTLGIFSPLACFKRIDS 195 (462)
Q Consensus 118 ~~-~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~l~~ 195 (462)
+. ........++........+....++.+...++. . ....+ ......+.++.-+...+..|.
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~in~~g~~~ 146 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLINA--------------P--INTFNIAITEIGIVAFFTALNFFGSKA 146 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------C--CCHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------C--CchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 62 223345666666666777777777777443321 0 01111 111112222233344556666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhccCCC-c
Q 012508 196 LSFTSALSVALAVAFVVITVGISIVKLISGGLGMPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNELEDST-H 274 (462)
Q Consensus 196 l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~ 274 (462)
...++.+.....+..++..++..+.....+ +..|.. .+.++.+++.++....|+|.|.+......+|+|||+ +
T Consensus 147 ~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~-----~~~~~~-~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ 220 (444)
T 3gia_A 147 VGRAEFFIVLVKLLILGLFIFAGLITIHPS-----YVIPDL-APSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKN 220 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCGG-----GTSCCC-SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChh-----hcCCCC-CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccc
Confidence 666666655444444333333333322111 122222 224456788888889999999999999999999998 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhCCCCCCCCCc--------hhHHHHHHHHHHHHHHHHHhhhhhh
Q 012508 275 IKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLANFDADLGIPF--------GSVLSDVVRVSYAAHLMLVFPVIFY 346 (462)
Q Consensus 275 ~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~p~~~~ 346 (462)
.+|....+..++.++|...........+.+ ++..+ .+ .|. +++...+..+...+..+.+.....+
T Consensus 221 ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~---~l~~~-~~---~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~ 293 (444)
T 3gia_A 221 VPRAIFISILIVMFVYVGVAISAIGNLPID---ELIKA-SE---NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIY 293 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCHH---HHHHT-GG---GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHhcc-cc---hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887766555421 11110 00 000 0122234444445555555544444
Q ss_pred HHHHHHhhh----cCCCCCCCCCCCceehhhHHH-HHHHHHHHHHhcCCHHHHHHhhchhhhhHHHHHhhhHHHHHhcCc
Q 012508 347 PLRLNLDGL----LFPSARPLGSSNTRFAFISSG-LLIIIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRHN 421 (462)
Q Consensus 347 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~ii~l~G~~~~~~l~~ilP~~~~~~~~~~ 421 (462)
...+.+..+ ..|+.-.+ .+ ++.-...+. ...++.+++. ..+++.+.++.+. +..+.|.++.+-+++.+++
T Consensus 294 ~~sR~l~a~a~dg~lP~~f~~-~~-~~~P~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~r~~ 368 (444)
T 3gia_A 294 GGANVAYSLAKDGELPEFFER-KV-WFKSTEGLYITSALGVLFAL-LFNMEGVASITSA--VFMVIYLFVILSHYILIDE 368 (444)
T ss_dssp TTHHHHHHHHHHSSCCSSCCT-TS-CCSCTHHHHHHHHHHHHHHH-HSCHHHHHHHHHH--HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCCCCCHHHhC-CC-CCCCcHHHHHHHHHHHHHHH-HcCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhc
Confidence 444433322 12221111 11 111111222 2222222222 3467777777443 3467788888888875544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.46 E-value=1.2e-10 Score=119.00 Aligned_cols=293 Identities=8% Similarity=0.030 Sum_probs=163.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchHHHHHHHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHh--hcCCCcHHHHHHHHh
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIALIIFMAFLT-DASIELLLRFSR--AGKSVSYGGLMGEAF 115 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~--~~~~~sy~~l~~~~~ 115 (462)
+.+|+.+.++.++..++.++| +..+|. ....|.. +++..++.+++. ..+...+.|... +.+.......+++.+
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P~GG~y~~~~~~~ 83 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTL 83 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC---CHHHHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCCCCChhhhHHhhc
Confidence 456789999999999999996 567775 4566653 333333333332 236666777665 433666777889999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccc
Q 012508 116 GKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDS 195 (462)
Q Consensus 116 Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 195 (462)
||+.+++..+..++.......++....++.+...+. . ++. .+.. ...+.+ ...++++.-+...+..|.
T Consensus 84 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----p~~-~~~~--~~~~~~-~~~~~~~~~~in~~g~~~ 151 (511)
T 4djk_A 84 GPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----W----PAL-NEDP--ITKTIA-ALIILWALALTQFGGTKY 151 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----C----GGG-TSCS--SHHHHH-HHHHHHHHHHHHHTCSSS
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C----ccc-ccCc--HHHHHH-HHHHHHHHHHHHHhChHH
Confidence 999999999888888777666666666665533211 0 111 1111 112221 212222233345556777
Q ss_pred hhhhhHHHHHHHHHH-HHHHHHHhhhhhccCCCC-----CCccCCCCCcchhhhHHHHhhhhHhHHHhhhhchHHHHHhc
Q 012508 196 LSFTSALSVALAVAF-VVITVGISIVKLISGGLG-----MPRILPDVTDFTSLINLFTVVPVLVTAFICHYNVHSIDNEL 269 (462)
Q Consensus 196 l~~~s~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 269 (462)
...++.+..++.++. +++.++..+.....++.. .....|+... .+...++...+|+|.|.+......+|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~G~e~~~~~a~E~ 227 (511)
T 4djk_A 152 TARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSK----VGTLVVFVAFILSYMGVEASATHVNEM 227 (511)
T ss_dssp HHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTS----TTTTTTHHHHHHHHTTGGGGTGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCccc----chHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 777776654332222 222222222222222211 0111222111 123345677899999999999999999
Q ss_pred cCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCch---hH---HhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHhh
Q 012508 270 EDST-HIKGVVRTSLALCSTVYIMTSIFGFLLFGDATL---DD---VLANFDADLGIPFGSVLSDVVRVSYAAHLMLVFP 342 (462)
Q Consensus 270 ~~~~-~~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~---~~---il~n~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 342 (462)
|||+ +.+|.+..+..++.++|...........++... +. ......+..+ +...+...+..+...+..+.+..
T Consensus 228 k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
T 4djk_A 228 SNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVA-PEIEWTVRVISALLLLGVLAEIA 306 (511)
T ss_dssp SCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSC-SSCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHHHH
Confidence 9998 689999999999999999998877766654321 11 1111111111 00134555666666777766665
Q ss_pred hhhhHHHHHH
Q 012508 343 VIFYPLRLNL 352 (462)
Q Consensus 343 ~~~~~~~~~~ 352 (462)
.......+.+
T Consensus 307 ~~~~~~sR~l 316 (511)
T 4djk_A 307 SWIVGPSRGM 316 (511)
T ss_dssp HHTTHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.81 E-value=4.1e-06 Score=84.66 Aligned_cols=334 Identities=9% Similarity=-0.015 Sum_probs=172.8
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhchHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChhH
Q 012508 41 VNGASFTGAVFNLSTTIVGAGIMALPATMKV-LGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKWG 119 (462)
Q Consensus 41 ~~~~s~~~~~~~l~~~~iG~GiL~LP~af~~-~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~~ 119 (462)
+|+.+.++.+..-++..++.+-+.+.-.+.. .++..+++.+++..++...-..+......+.+.. +.++.+..||+++
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~-~~v~~R~~FG~~G 102 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN-FTVAARMPFGIRG 102 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC-HHHHTTTTSCTTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC-hhhhhHhhcchhH
Confidence 3456777777777777776666655544433 3456666666666666555555556666666555 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchhhh
Q 012508 120 KVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLSFT 199 (462)
Q Consensus 120 ~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~ 199 (462)
..+..+...+.++|-...-....++.+..++. ..++ . ...+...++..++.+++.+ ..++.++++
T Consensus 103 s~i~~ll~~i~~igw~~v~~~~gg~al~~~~~----------~~~g---~-~~~~v~~~i~~~l~~~~~~-~G~~~i~~~ 167 (501)
T 2jln_A 103 SLIPITLKALLSLFWFGFQTWLGALALDEITR----------LLTG---F-TNLPLWIVIFGAIQVVTTF-YGITFIRWM 167 (501)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHC---C-CCHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcC---c-chHHHHHHHHHHHHHHHHH-hCHHHHHHH
Confidence 99999999888888777777777776643321 0001 0 1122222323334444443 346777777
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCC--CCCccCCCCCcchhhhHHHHhhhh-HhHHHhhhhchHHHHHhccCCCc--
Q 012508 200 SALSVALAVAFVVITVGISIVKLISGGL--GMPRILPDVTDFTSLINLFTVVPV-LVTAFICHYNVHSIDNELEDSTH-- 274 (462)
Q Consensus 200 s~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~faf~~~~~~~~i~~~m~~~~~-- 274 (462)
+.+.....++..+...+..... .+. ......+.. ...+.+..++.. ..+.-....+.+...+.+|++++
T Consensus 168 ~~~~~p~~~i~~i~~~~~~l~~---~g~~~~~~~~~~~~---~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~ 241 (501)
T 2jln_A 168 NVFASPVLLAMGVYMVYLMLDG---ADVSLGEVMSMGGE---NPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNAS 241 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HTCCHHHHTTCCCS---SCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCcchhhhccCCc---cchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcccc
Confidence 7776643333332222222211 111 000000100 112223333332 22333455778999999998887
Q ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHhhC-CCCCCCCCchhHHHHHHH-HHHHHHHHHHhh
Q 012508 275 ----------IKGVVRTSLALCSTVYIMTSIFGFLLFGDATLDDVLAN-FDADLGIPFGSVLSDVVR-VSYAAHLMLVFP 342 (462)
Q Consensus 275 ----------~~~~~~~s~~i~~~~y~~~g~~gy~~fg~~~~~~il~n-~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p 342 (462)
.......+..+...+...+|.......++....+++.. ++.. ..+..+.- +...+..+.+--
T Consensus 242 ~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~------~~~~~~~~~~~~~la~i~tn~ 315 (501)
T 2jln_A 242 REGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGV------SIPMAILFQVFVLLATWSTNP 315 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCC------CHHHHHHHHHHHHHHHHTTHH
T ss_pred ccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555555555666654434444333444433 2211 12123333 444444443333
Q ss_pred -hhhhHHHHHHhhhcCCCCCCCCCCCceehhhHHHHHHHHHHHHHhc--CCHHHHHHhhchhhhhHHHHHh
Q 012508 343 -VIFYPLRLNLDGLLFPSARPLGSSNTRFAFISSGLLIIIFLGANFI--PSIWDAFQFTGATAAVCLGFIF 410 (462)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~~~ii~l~G~~~~~~l~~il 410 (462)
-..++....+.+.. ++. .+ |+. .+++..++.++++... ..+.+.+++.|.+.......++
T Consensus 316 ~~n~ys~~~~l~~~~-~~~----i~--~~~-~~~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P~~gI~l 378 (501)
T 2jln_A 316 AANLLSPAYTLCSTF-PRV----FT--FKT-GVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMI 378 (501)
T ss_dssp HHHTHHHHHHHHHHS-TTT----CC--HHH-HHHHHHHHHHHTCGGGTHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HhhHHHHHHHHHHhC-ccc----cc--hhH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777763 321 11 111 1222223333333332 3466677777777766555443
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.27 E-value=0.0045 Score=62.81 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=82.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhh-hchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhChh
Q 012508 40 EVNGASFTGAVFNLSTTIVGAG-IMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGKW 118 (462)
Q Consensus 40 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk~ 118 (462)
..|+.+++...+.+..+.+++. .+.+|-...+.|+........ .++........+..-.++.+..|..|.-++-||++
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~~~~T~~e~l~~Rfg~~ 96 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKK 96 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHTTCCSHHHHHHHHTCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCcH
Confidence 4567888888888887777654 566888777778642211111 11111122333444556778999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccchh
Q 012508 119 GKVLLQLSVLIN-NVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSLS 197 (462)
Q Consensus 119 ~~~~~~~~~~l~-~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 197 (462)
.+.+..+...+. .+..+.+-+...+..++.+ ++ -..+..+++..+++........++...
T Consensus 97 ~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~--------------~G-----i~~~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 97 LKTILAVFWISLYIFVNLTSVLYLGGLALETI--------------LG-----IPLMYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH--------------TT-----CCHHHHHHHHHHHHHHTTC------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hC-----CCHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 887776654432 2222222222223223111 11 123333444444556778888999999
Q ss_pred hhhHHHHHHHHH
Q 012508 198 FTSALSVALAVA 209 (462)
Q Consensus 198 ~~s~~~~~~~~~ 209 (462)
+...+..++.++
T Consensus 158 ~TD~iQ~~im~~ 169 (530)
T 3dh4_A 158 WTDVIQVFFLVL 169 (530)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888754443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.79 E-value=0.019 Score=58.98 Aligned_cols=153 Identities=11% Similarity=0.020 Sum_probs=80.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhh-hchHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhCh
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAG-IMALPATMKVLGLVLGIALIIFMAFLTDASIELLLRFSRAGKSVSYGGLMGEAFGK 117 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~sy~~l~~~~~Gk 117 (462)
-..|+.+++...+.+..+.+++. .+..|-...+.|+........ .++........+..-.++.+..|..|.-++-||+
T Consensus 46 laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 46 LAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNK 124 (593)
T ss_dssp -----CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCH
T ss_pred cCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccC
Confidence 34567888888888877666654 456887777777632211111 1111112223344445677899999999999999
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHhhcccccccCCCCccccccccccccCccccchhHHHHHHHHHHhhcccccccccch
Q 012508 118 WGKVLLQLSVLI-NNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNGRTFVLLVTTLGIFSPLACFKRIDSL 196 (462)
Q Consensus 118 ~~~~~~~~~~~l-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 196 (462)
+.+.+..+...+ +.+.....-+...+..++.+ ++ -..+...++..+++..+.....++..
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~--------------~G-----i~~~~~i~i~~~i~~~Yt~~GGl~av 185 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETI--------------LG-----IPLMYSILGLALFALVYSIYGGLSAV 185 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH--------------HC-----CCHHHHHHHHHHHHHHHHHTTC---C
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------cC-----ccHHHHHHHHHHHHHHHHHhcchHHH
Confidence 888776655433 22222222222233333211 11 11223333344455667788888988
Q ss_pred hhhhHHHHHHHHHHH
Q 012508 197 SFTSALSVALAVAFV 211 (462)
Q Consensus 197 ~~~s~~~~~~~~~~~ 211 (462)
.+...+..++.++..
T Consensus 186 ~~TD~iQ~iiml~~~ 200 (593)
T 2xq2_A 186 VWTDVIQVFFLVLGG 200 (593)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887775444333
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=96.96 E-value=0.37 Score=48.17 Aligned_cols=238 Identities=12% Similarity=0.066 Sum_probs=109.8
Q ss_pred CcHHHHHHHHHHHHHhhh-hchHHHHHHHhc----HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCcHHHHHHHHhCh
Q 012508 44 ASFTGAVFNLSTTIVGAG-IMALPATMKVLG----LVLGIALIIFMAFLTDASIELLLRFSR-AGKSVSYGGLMGEAFGK 117 (462)
Q Consensus 44 ~s~~~~~~~l~~~~iG~G-iL~LP~af~~~G----~~~g~i~l~~~~~~~~~t~~~l~~~~~-~~~~~sy~~l~~~~~Gk 117 (462)
.|-.+-++..+++.+|.| +.-.||-..+-| +++=+++++++++=-.+.-..+.|-.. +.+... .+..++...+
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~-i~a~~~l~~~ 87 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTT-PAIFYLLWRN 87 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSH-HHHHHHHSCS
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCH-HHHHHHhcCC
Confidence 667888999999999999 677999776665 555555566666555555555556333 232222 2222333222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cccCC---CCccc-cc-------cccccccC----ccccc--hh
Q 012508 118 WGKVLLQLSVLINNVGVLIVYMIIIGDVL-------SGTSS---SGVHH-AG-------VLEGWFGD----HWWNG--RT 173 (462)
Q Consensus 118 ~~~~~~~~~~~l~~~g~~~~y~i~~~~~l-------~~~~~---~~~~~-~~-------~~~~~~~~----~~~~~--~~ 173 (462)
+....+.....+..+..++-|.+..+-.+ ++-++ +...+ .+ .+.+..+. ..... ..
T Consensus 88 ~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~ 167 (519)
T 2a65_A 88 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLF 167 (519)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHH
Confidence 11111222223333333333333322211 11111 00000 00 00000000 00000 11
Q ss_pred HHHHHHHHHHhhcccccccc-cchhhhhHHHHHHHHHHHHHHHHHhhhhhccCC----CCCC---ccCCCCCcchhhhHH
Q 012508 174 FVLLVTTLGIFSPLACFKRI-DSLSFTSALSVALAVAFVVITVGISIVKLISGG----LGMP---RILPDVTDFTSLINL 245 (462)
Q Consensus 174 ~~~~~~~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~ 245 (462)
.........++.-++..|.. +....++.+...+-.+.+++.++ +...-++ ..+. ...|+++...+..-+
T Consensus 168 ~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~i---r~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw 244 (519)
T 2a65_A 168 AYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVI---RVFLLETPNGTAADGLNFLWTPDFEKLKDPGVW 244 (519)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHH---HHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHH
Confidence 11111122233335677777 55777776665433333322222 2221111 0000 113545443333446
Q ss_pred HHhhhhHhHHHh-hhhchHHHHHhccCCCchhhHHHHHHHH
Q 012508 246 FTVVPVLVTAFI-CHYNVHSIDNELEDSTHIKGVVRTSLAL 285 (462)
Q Consensus 246 ~~~~~~~~faf~-~~~~~~~i~~~m~~~~~~~~~~~~s~~i 285 (462)
..+++...|+.+ |...+...-+.+|++++..+.......+
T Consensus 245 ~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~ 285 (519)
T 2a65_A 245 IAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATL 285 (519)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHH
Confidence 788999999998 5566777777777777776655444333
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=61.13 E-value=53 Score=31.46 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=38.2
Q ss_pred CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012508 104 SVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSG 148 (462)
Q Consensus 104 ~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~ 148 (462)
.....++.+..+|+++..++.+...+..+++..++....+..+..
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~ 303 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKA 303 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999998888877776643
No 9
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=48.67 E-value=1.9e+02 Score=28.00 Aligned_cols=32 Identities=6% Similarity=0.182 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012508 117 KWGKVLLQLSVLINNVGVLIVYMIIIGDVLSG 148 (462)
Q Consensus 117 k~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~ 148 (462)
++...+..+...+..+++..+++...+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 318 (511)
T 4djk_A 287 EWTVRVISALLLLGVLAEIASWIVGPSRGMYV 318 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888777777766666643
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=40.87 E-value=88 Score=29.83 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012508 104 SVSYGGLMGEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLS 147 (462)
Q Consensus 104 ~~sy~~l~~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~ 147 (462)
.....++.+..+|+++..++.+...+..+++..+.....+..+.
T Consensus 257 ~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~ 300 (444)
T 3gia_A 257 ENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAY 300 (444)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999888888888887766655553
No 11
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=32.72 E-value=39 Score=33.57 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=57.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhchH----HHHHHH--------hcHHHHHHHHHHHHHHHHHHHHHHHHHH------h
Q 012508 39 GEVNGASFTGAVFNLSTTIVGAGIMAL----PATMKV--------LGLVLGIALIIFMAFLTDASIELLLRFS------R 100 (462)
Q Consensus 39 ~~~~~~s~~~~~~~l~~~~iG~GiL~L----P~af~~--------~G~~~g~i~l~~~~~~~~~t~~~l~~~~------~ 100 (462)
+++++-|..+-+.-++.+-+|+|++.- |....+ .-.-.+.....+=+.+.-|+.+.+.-.. +
T Consensus 91 d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yr 170 (539)
T 4ain_A 91 DEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFR 170 (539)
T ss_dssp TCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhc
Confidence 445668889999999999999998742 111111 0122333444444444455555544332 1
Q ss_pred hcC-----CCcHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012508 101 AGK-----SVSYGGLMGE-AFGKWGKVLLQLSVLINNVGVLIVYMIIIG 143 (462)
Q Consensus 101 ~~~-----~~sy~~l~~~-~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~ 143 (462)
|.. ..=|+=++++ .-|+.|+.+=.++++-..+|...+.-....
T Consensus 171 k~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~ 219 (539)
T 4ain_A 171 VGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGAL 219 (539)
T ss_dssp TCCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHH
Confidence 211 1125666666 677777655555555566666655544443
No 12
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=28.04 E-value=1.9e+02 Score=28.51 Aligned_cols=164 Identities=10% Similarity=-0.003 Sum_probs=82.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhchH----HHHHHHh-------c----HHHHHHHHHHHHHHHHHHHHHHHHH---H--
Q 012508 40 EVNGASFTGAVFNLSTTIVGAGIMAL----PATMKVL-------G----LVLGIALIIFMAFLTDASIELLLRF---S-- 99 (462)
Q Consensus 40 ~~~~~s~~~~~~~l~~~~iG~GiL~L----P~af~~~-------G----~~~g~i~l~~~~~~~~~t~~~l~~~---~-- 99 (462)
++++-|..+-+.-++.+-+|.|++.- |....+. | .-.+.....+=+.+.-|+.+.+.-. .
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~ 166 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFF 166 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 45568888999999999999998774 2221111 1 1122222222233333333333221 1
Q ss_pred h-hc-C-----CCcHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccccccCccccc
Q 012508 100 R-AG-K-----SVSYGGLM-GEAFGKWGKVLLQLSVLINNVGVLIVYMIIIGDVLSGTSSSGVHHAGVLEGWFGDHWWNG 171 (462)
Q Consensus 100 ~-~~-~-----~~sy~~l~-~~~~Gk~~~~~~~~~~~l~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (462)
. |. + ..=|+-++ ++.-|+.|+.+=.+.++-..+|...+.-....+.-..+ +..++-.. +.
T Consensus 167 y~r~~~pl~iss~l~PllG~~r~~G~~G~~IDilav~at~~G~atsLGlg~~qi~~Gl-----------~~lfGi~~-~~ 234 (509)
T 2wsw_A 167 FVRKMEVIRPSSTLVPLVGEKHVNGLFGTVVDNFYLVALILAMGTSLGLATPLVTECI-----------QYLFGIPH-TL 234 (509)
T ss_dssp HTSCCCCCSGGGGCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHCCCC-CH
T ss_pred HHcCCCCcchHHHhHhhcCCcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHcCCCC-cc
Confidence 1 21 1 12366677 77888888866666666667776665444433322110 11222110 11
Q ss_pred hhHHHHHHHHHHhhcccccccc-cchhhhhHHHHHHHHHHHHHHH
Q 012508 172 RTFVLLVTTLGIFSPLACFKRI-DSLSFTSALSVALAVAFVVITV 215 (462)
Q Consensus 172 ~~~~~~~~~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~v 215 (462)
.....++....++.-++....+ |..+++|.+.+.+++.+++.++
T Consensus 235 ~~qi~ii~vit~~~~~Sa~sGl~kGIk~LS~~N~~la~~Ll~fvl 279 (509)
T 2wsw_A 235 QLDAIIISCWILLNAICVAFGLQKGVKIASDVRTYLSFLMLGWVF 279 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223333344445666666 6688888887766655544333
No 13
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=27.91 E-value=3.1e+02 Score=24.03 Aligned_cols=36 Identities=3% Similarity=-0.003 Sum_probs=23.2
Q ss_pred HHhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012508 266 DNELEDSTHIKGVVRTSLALCSTVYIMTSIFGFLLFG 302 (462)
Q Consensus 266 ~~~m~~~~~~~~~~~~s~~i~~~~y~~~g~~gy~~fg 302 (462)
.+.+.+| ++++.+.....+..++|..........++
T Consensus 21 ~~~i~~p-~lr~~vl~Pllinl~L~~~~~~~~~~~~~ 56 (249)
T 3tx3_A 21 LELIRTK-GLRRYVVVPILTNLILFSLAFTWLYGEVD 56 (249)
T ss_dssp HHHHTST-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666 68888888888888876665444433333
No 14
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=22.04 E-value=4e+02 Score=23.29 Aligned_cols=94 Identities=21% Similarity=0.271 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCCCCCCCCCCCc-eehhhHHHHHHHHHHHHHhc-------------
Q 012508 323 SVLSDVVRVSYAAHLMLVFPVIFYPLRLNLDGLLFPSARPLGSSNT-RFAFISSGLLIIIFLGANFI------------- 388 (462)
Q Consensus 323 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~------------- 388 (462)
+.+..-.++.....++.+.|...+=.-.-+..-+.++ +.+.. ..+.....+.......+.++
T Consensus 59 e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~----Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~ 134 (249)
T 4b4a_A 59 EPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSH----EKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLG 134 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCC----CTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778888999999999999998776654443322222 12222 22222222222332333211
Q ss_pred -------C--CHHHHHHhhchh-hhhHHHHHhhhHHHHHhcC
Q 012508 389 -------P--SIWDAFQFTGAT-AAVCLGFIFPAAITLRDRH 420 (462)
Q Consensus 389 -------~--~~~~ii~l~G~~-~~~~l~~ilP~~~~~~~~~ 420 (462)
+ ++++.++++-.+ ....++|-+|.++.+..+-
T Consensus 135 ~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~ 176 (249)
T 4b4a_A 135 FTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKA 176 (249)
T ss_dssp STTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred hhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4 556666665544 3345677799998887544
Done!