Query 012511
Match_columns 462
No_of_seqs 354 out of 2106
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09243 Rsm22: Mitochondrial 100.0 6.7E-74 1.5E-78 565.8 26.6 272 61-461 2-274 (274)
2 COG5459 Predicted rRNA methyla 100.0 5.9E-68 1.3E-72 515.5 12.7 318 56-462 77-403 (484)
3 KOG2539 Mitochondrial/chloropl 100.0 4.1E-52 9E-57 420.6 13.3 300 47-462 154-466 (491)
4 KOG2539 Mitochondrial/chloropl 99.7 2.1E-18 4.5E-23 175.9 -2.6 351 2-460 41-400 (491)
5 PF01209 Ubie_methyltran: ubiE 99.5 6E-14 1.3E-18 135.7 8.9 149 46-211 9-160 (233)
6 COG2226 UbiE Methylase involve 99.5 1.1E-12 2.3E-17 126.5 17.1 151 45-213 12-165 (238)
7 PRK06202 hypothetical protein; 99.4 2.5E-12 5.5E-17 124.1 15.6 162 21-208 7-170 (232)
8 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.1E-11 2.5E-16 120.8 16.1 144 57-210 20-170 (247)
9 PF12847 Methyltransf_18: Meth 99.4 4.2E-12 9E-17 107.7 10.6 105 93-205 2-112 (112)
10 PLN02233 ubiquinone biosynthes 99.4 2.6E-11 5.7E-16 119.3 17.2 121 92-221 73-198 (261)
11 TIGR00740 methyltransferase, p 99.3 4.1E-11 9E-16 116.1 17.1 143 56-208 16-165 (239)
12 PRK11036 putative S-adenosyl-L 99.3 2.5E-11 5.4E-16 118.9 13.4 122 74-206 27-151 (255)
13 TIGR03587 Pse_Me-ase pseudamin 99.3 7.2E-11 1.6E-15 112.0 14.1 106 92-210 43-148 (204)
14 TIGR02752 MenG_heptapren 2-hep 99.3 7.5E-11 1.6E-15 113.4 14.2 111 92-210 45-157 (231)
15 PRK14103 trans-aconitate 2-met 99.3 8.4E-11 1.8E-15 115.1 14.4 110 83-207 20-129 (255)
16 PRK05785 hypothetical protein; 99.2 7.6E-11 1.7E-15 113.6 13.2 112 80-211 41-152 (226)
17 PF13847 Methyltransf_31: Meth 99.2 6.1E-11 1.3E-15 106.8 9.6 106 92-206 3-112 (152)
18 PRK11207 tellurite resistance 99.2 2.6E-10 5.6E-15 107.6 13.1 102 91-204 29-134 (197)
19 PLN02244 tocopherol O-methyltr 99.2 2.6E-10 5.7E-15 116.5 14.1 118 79-206 100-225 (340)
20 COG2227 UbiG 2-polyprenyl-3-me 99.2 1.1E-10 2.4E-15 111.3 10.2 104 91-205 58-162 (243)
21 PF08241 Methyltransf_11: Meth 99.2 8.3E-11 1.8E-15 95.9 8.2 95 97-202 1-95 (95)
22 PLN02396 hexaprenyldihydroxybe 99.2 1.4E-10 3E-15 117.2 11.3 104 92-206 131-237 (322)
23 TIGR00477 tehB tellurite resis 99.2 3.2E-10 7E-15 106.8 12.6 104 90-204 28-133 (195)
24 PRK10258 biotin biosynthesis p 99.2 1E-09 2.3E-14 107.0 16.4 111 83-207 33-143 (251)
25 PF08242 Methyltransf_12: Meth 99.1 5.1E-12 1.1E-16 105.3 -0.4 99 97-200 1-99 (99)
26 TIGR02072 BioC biotin biosynth 99.1 8.2E-10 1.8E-14 105.8 14.4 107 91-208 33-139 (240)
27 PF13489 Methyltransf_23: Meth 99.1 1E-10 2.2E-15 105.0 7.3 100 91-209 21-120 (161)
28 KOG4300 Predicted methyltransf 99.1 2.8E-10 6.1E-15 105.5 10.0 133 80-222 64-199 (252)
29 PRK01683 trans-aconitate 2-met 99.1 1E-09 2.2E-14 107.4 14.7 112 83-207 22-133 (258)
30 PTZ00098 phosphoethanolamine N 99.1 1.4E-09 3E-14 107.2 15.2 125 70-208 34-160 (263)
31 COG4106 Tam Trans-aconitate me 99.1 3.6E-10 7.8E-15 105.6 9.6 114 81-209 19-134 (257)
32 PRK08317 hypothetical protein; 99.1 2.1E-09 4.6E-14 102.8 15.0 112 87-206 14-126 (241)
33 PF05401 NodS: Nodulation prot 99.1 6.2E-10 1.3E-14 103.5 10.4 116 88-214 39-164 (201)
34 PRK00216 ubiE ubiquinone/menaq 99.1 2.9E-09 6.4E-14 102.1 15.7 111 92-210 51-164 (239)
35 PRK12335 tellurite resistance 99.1 1.1E-09 2.3E-14 109.4 12.7 102 92-205 120-224 (287)
36 PLN02490 MPBQ/MSBQ methyltrans 99.1 1.4E-09 3E-14 110.5 12.7 107 93-209 114-220 (340)
37 PLN02585 magnesium protoporphy 99.1 3.6E-09 7.8E-14 106.7 15.5 102 92-204 144-249 (315)
38 PF13649 Methyltransf_25: Meth 99.0 5.6E-10 1.2E-14 93.5 7.1 93 96-195 1-96 (101)
39 KOG1270 Methyltransferases [Co 99.0 7.1E-10 1.5E-14 106.6 8.6 100 94-203 91-194 (282)
40 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 5.5E-09 1.2E-13 99.1 14.8 111 92-210 39-149 (223)
41 smart00138 MeTrc Methyltransfe 99.0 1.5E-09 3.3E-14 107.0 10.8 131 71-203 77-241 (264)
42 TIGR00452 methyltransferase, p 99.0 3.5E-09 7.5E-14 106.8 12.3 109 85-204 114-225 (314)
43 PRK15068 tRNA mo(5)U34 methylt 99.0 3.9E-09 8.5E-14 107.0 12.7 106 87-203 117-225 (322)
44 PRK07580 Mg-protoporphyrin IX 99.0 9E-09 2E-13 98.6 13.8 101 91-205 62-166 (230)
45 PRK11088 rrmA 23S rRNA methylt 99.0 1.4E-08 3.1E-13 100.4 15.6 128 72-221 65-194 (272)
46 PLN03075 nicotianamine synthas 99.0 1E-08 2.3E-13 101.8 14.2 122 71-202 102-231 (296)
47 PF03848 TehB: Tellurite resis 99.0 5.1E-09 1.1E-13 98.0 11.3 112 83-205 21-134 (192)
48 PRK11873 arsM arsenite S-adeno 99.0 6.6E-09 1.4E-13 102.6 12.6 107 92-206 77-185 (272)
49 PLN02336 phosphoethanolamine N 99.0 8.2E-09 1.8E-13 110.0 14.0 106 92-207 266-372 (475)
50 KOG3010 Methyltransferase [Gen 98.9 3.3E-09 7.2E-14 100.8 9.0 129 59-202 6-135 (261)
51 smart00828 PKS_MT Methyltransf 98.9 6.5E-09 1.4E-13 99.5 11.2 103 94-206 1-106 (224)
52 PRK00107 gidB 16S rRNA methylt 98.9 9.2E-09 2E-13 96.3 11.5 100 93-206 46-147 (187)
53 TIGR02021 BchM-ChlM magnesium 98.9 1.9E-08 4E-13 96.2 13.8 91 91-195 54-147 (219)
54 PLN02336 phosphoethanolamine N 98.9 1E-08 2.3E-13 109.2 12.2 106 91-206 36-144 (475)
55 TIGR00138 gidB 16S rRNA methyl 98.9 3E-08 6.6E-13 92.4 12.8 99 92-204 42-142 (181)
56 PRK05134 bifunctional 3-demeth 98.8 4.9E-08 1.1E-12 94.0 14.0 107 90-206 46-153 (233)
57 KOG1540 Ubiquinone biosynthesi 98.8 1.7E-08 3.6E-13 96.7 10.3 113 91-207 99-217 (296)
58 TIGR00537 hemK_rel_arch HemK-r 98.8 5.9E-08 1.3E-12 89.9 13.6 105 92-209 19-145 (179)
59 TIGR02469 CbiT precorrin-6Y C5 98.8 4.3E-08 9.4E-13 84.1 11.8 100 92-202 19-120 (124)
60 TIGR01983 UbiG ubiquinone bios 98.8 6.6E-08 1.4E-12 92.3 14.0 106 91-206 44-151 (224)
61 PRK06922 hypothetical protein; 98.8 3.6E-08 7.9E-13 106.6 13.1 107 92-206 418-539 (677)
62 PRK11705 cyclopropane fatty ac 98.8 7.5E-08 1.6E-12 99.9 14.6 115 80-208 155-271 (383)
63 PRK00121 trmB tRNA (guanine-N( 98.8 6.4E-08 1.4E-12 91.7 12.9 121 92-222 40-170 (202)
64 TIGR03840 TMPT_Se_Te thiopurin 98.8 4.6E-08 9.9E-13 93.5 11.6 113 80-203 22-151 (213)
65 TIGR02716 C20_methyl_CrtF C-20 98.8 1.2E-07 2.6E-12 95.4 14.0 105 92-205 149-255 (306)
66 TIGR02081 metW methionine bios 98.8 8.7E-08 1.9E-12 89.9 12.2 103 81-202 4-107 (194)
67 PRK13944 protein-L-isoaspartat 98.8 8.3E-08 1.8E-12 91.1 12.0 99 92-204 72-173 (205)
68 COG2230 Cfa Cyclopropane fatty 98.7 1.7E-07 3.7E-12 92.4 13.6 121 80-210 60-182 (283)
69 PF05175 MTS: Methyltransferas 98.7 1.9E-07 4E-12 86.0 12.6 113 92-214 31-149 (170)
70 PRK08287 cobalt-precorrin-6Y C 98.7 2.9E-07 6.3E-12 85.8 13.6 100 92-205 31-132 (187)
71 PRK13942 protein-L-isoaspartat 98.7 2.3E-07 5E-12 88.5 12.9 99 92-204 76-176 (212)
72 TIGR00406 prmA ribosomal prote 98.7 2.2E-07 4.7E-12 92.9 13.0 103 92-206 159-261 (288)
73 TIGR00080 pimt protein-L-isoas 98.7 2.4E-07 5.2E-12 88.5 12.7 99 92-204 77-177 (215)
74 PRK09489 rsmC 16S ribosomal RN 98.7 3.6E-07 7.8E-12 93.4 14.6 112 93-214 197-312 (342)
75 PRK04266 fibrillarin; Provisio 98.7 3.5E-07 7.5E-12 88.2 13.4 102 88-202 68-174 (226)
76 PRK00517 prmA ribosomal protei 98.6 6.6E-07 1.4E-11 87.5 15.1 112 74-205 103-214 (250)
77 PF08003 Methyltransf_9: Prote 98.6 3E-07 6.4E-12 91.0 12.3 104 88-202 111-217 (315)
78 KOG1541 Predicted protein carb 98.6 9.1E-08 2E-12 89.9 8.1 133 55-202 13-158 (270)
79 PF07021 MetW: Methionine bios 98.6 2.4E-07 5.1E-12 86.2 10.7 108 93-222 14-122 (193)
80 TIGR03438 probable methyltrans 98.6 2.6E-07 5.7E-12 92.9 12.0 112 82-202 55-175 (301)
81 PRK00377 cbiT cobalt-precorrin 98.6 5.6E-07 1.2E-11 84.8 13.3 116 92-221 40-158 (198)
82 PRK15001 SAM-dependent 23S rib 98.6 2.9E-07 6.3E-12 95.0 12.2 113 93-212 229-347 (378)
83 PRK11188 rrmJ 23S rRNA methylt 98.6 8.3E-07 1.8E-11 84.6 13.7 129 81-222 39-183 (209)
84 COG4976 Predicted methyltransf 98.6 6.4E-08 1.4E-12 91.4 5.4 97 93-202 126-223 (287)
85 PF02353 CMAS: Mycolic acid cy 98.6 4.3E-07 9.3E-12 90.0 11.6 120 80-209 50-171 (273)
86 PRK13255 thiopurine S-methyltr 98.5 5.7E-07 1.2E-11 86.3 11.3 102 93-202 38-153 (218)
87 PRK14967 putative methyltransf 98.5 1.9E-06 4E-11 82.8 14.9 71 93-173 37-108 (223)
88 COG2264 PrmA Ribosomal protein 98.5 6.4E-07 1.4E-11 89.0 11.2 99 92-202 162-261 (300)
89 PF00891 Methyltransf_2: O-met 98.5 8.1E-07 1.8E-11 86.1 11.5 101 89-206 96-201 (241)
90 TIGR00091 tRNA (guanine-N(7)-) 98.5 1.3E-06 2.9E-11 82.1 12.0 107 93-205 17-133 (194)
91 PRK04457 spermidine synthase; 98.5 1.3E-06 2.8E-11 86.1 12.2 108 92-207 66-180 (262)
92 cd02440 AdoMet_MTases S-adenos 98.5 1.4E-06 3.1E-11 70.4 10.1 100 95-203 1-103 (107)
93 PF13659 Methyltransf_26: Meth 98.5 8.3E-07 1.8E-11 75.7 8.9 105 94-205 2-116 (117)
94 PF06325 PrmA: Ribosomal prote 98.5 9.2E-07 2E-11 88.4 10.4 114 73-202 144-257 (295)
95 PRK00312 pcm protein-L-isoaspa 98.5 1.6E-06 3.6E-11 82.4 11.8 97 92-205 78-176 (212)
96 KOG2361 Predicted methyltransf 98.4 1E-06 2.2E-11 84.0 9.6 110 92-207 71-186 (264)
97 TIGR03534 RF_mod_PrmC protein- 98.4 3.8E-06 8.2E-11 81.4 13.3 73 92-173 87-161 (251)
98 TIGR00438 rrmJ cell division p 98.4 2.5E-06 5.3E-11 79.7 11.1 38 92-130 32-69 (188)
99 PRK09328 N5-glutamine S-adenos 98.4 3.6E-06 7.8E-11 82.9 12.7 73 92-173 108-182 (275)
100 PRK00811 spermidine synthase; 98.4 4.2E-06 9.1E-11 83.5 13.1 111 92-208 76-194 (283)
101 smart00650 rADc Ribosomal RNA 98.4 2.8E-06 6.2E-11 77.9 10.8 74 92-175 13-86 (169)
102 PF01739 CheR: CheR methyltran 98.4 2.1E-06 4.6E-11 80.9 9.9 130 71-202 9-173 (196)
103 PF01135 PCMT: Protein-L-isoas 98.4 1.9E-06 4E-11 82.1 9.3 114 71-205 58-173 (209)
104 PRK07402 precorrin-6B methylas 98.4 1.4E-05 3.1E-10 75.1 15.2 113 92-220 40-154 (196)
105 PRK13943 protein-L-isoaspartat 98.3 4.9E-06 1.1E-10 84.3 12.1 99 92-204 80-180 (322)
106 PRK14968 putative methyltransf 98.3 1.3E-05 2.8E-10 74.0 13.3 104 92-206 23-150 (188)
107 PRK14966 unknown domain/N5-glu 98.3 1.3E-05 2.9E-10 83.3 14.6 75 93-174 252-327 (423)
108 COG2890 HemK Methylase of poly 98.3 1.1E-05 2.3E-10 80.4 13.5 76 95-178 113-190 (280)
109 COG4123 Predicted O-methyltran 98.3 8.5E-06 1.8E-10 79.1 12.2 108 93-205 45-171 (248)
110 COG2518 Pcm Protein-L-isoaspar 98.3 4.5E-06 9.6E-11 78.8 9.8 97 92-205 72-170 (209)
111 TIGR00417 speE spermidine synt 98.3 1.1E-05 2.3E-10 80.0 13.0 107 92-203 72-185 (270)
112 PTZ00146 fibrillarin; Provisio 98.3 8.3E-06 1.8E-10 81.1 12.1 106 92-205 132-238 (293)
113 TIGR03533 L3_gln_methyl protei 98.3 1.1E-05 2.4E-10 80.5 12.9 73 92-173 121-196 (284)
114 PLN02232 ubiquinone biosynthes 98.3 3.1E-06 6.8E-11 77.1 8.0 82 122-210 1-87 (160)
115 TIGR03704 PrmC_rel_meth putati 98.2 2.2E-05 4.9E-10 76.9 14.5 73 93-173 87-160 (251)
116 PRK01581 speE spermidine synth 98.2 1.3E-05 2.9E-10 81.8 12.8 107 92-204 150-268 (374)
117 PRK11805 N5-glutamine S-adenos 98.2 1.3E-05 2.8E-10 80.9 12.5 72 93-173 134-208 (307)
118 KOG2899 Predicted methyltransf 98.2 9.5E-06 2.1E-10 77.5 10.5 126 90-221 56-222 (288)
119 TIGR00536 hemK_fam HemK family 98.2 2.8E-05 6.1E-10 77.5 14.4 71 94-173 116-189 (284)
120 COG2813 RsmC 16S RNA G1207 met 98.2 2.9E-05 6.3E-10 77.0 13.9 112 87-208 153-270 (300)
121 COG2242 CobL Precorrin-6B meth 98.2 1.6E-05 3.4E-10 73.7 10.8 96 92-202 34-133 (187)
122 PF10294 Methyltransf_16: Puta 98.2 2.1E-05 4.6E-10 72.7 11.7 111 90-205 43-158 (173)
123 PF05219 DREV: DREV methyltran 98.2 2E-05 4.3E-10 76.5 11.8 95 90-202 92-186 (265)
124 PLN02781 Probable caffeoyl-CoA 98.1 2.7E-05 6E-10 75.5 12.1 105 92-202 68-176 (234)
125 PRK01544 bifunctional N5-gluta 98.1 2.8E-05 6.2E-10 83.6 12.9 72 93-173 139-213 (506)
126 PRK14121 tRNA (guanine-N(7)-)- 98.1 3.7E-05 8E-10 79.5 12.9 120 92-222 122-249 (390)
127 PHA03411 putative methyltransf 98.1 3.5E-05 7.6E-10 76.0 11.9 76 93-180 65-140 (279)
128 TIGR01177 conserved hypothetic 98.1 6E-05 1.3E-09 76.7 14.1 105 93-207 183-297 (329)
129 PF03291 Pox_MCEL: mRNA cappin 98.1 5.6E-06 1.2E-10 84.2 6.3 122 92-219 62-198 (331)
130 PRK13168 rumA 23S rRNA m(5)U19 98.1 3.9E-05 8.5E-10 81.3 12.9 89 79-173 284-374 (443)
131 PRK03522 rumB 23S rRNA methylu 98.1 4.1E-05 9E-10 77.5 12.5 93 72-173 153-247 (315)
132 PF05891 Methyltransf_PK: AdoM 98.0 1.4E-05 2.9E-10 75.9 7.9 109 93-211 56-168 (218)
133 PHA03412 putative methyltransf 98.0 4.3E-05 9.3E-10 73.7 11.1 108 93-212 50-168 (241)
134 KOG1271 Methyltransferases [Ge 98.0 1.6E-05 3.5E-10 73.0 7.7 103 94-203 69-180 (227)
135 PLN02366 spermidine synthase 98.0 6.8E-05 1.5E-09 75.6 13.0 107 92-203 91-205 (308)
136 COG2263 Predicted RNA methylas 98.0 3.3E-05 7.2E-10 71.5 9.6 103 88-204 41-144 (198)
137 PLN02476 O-methyltransferase 98.0 0.00015 3.2E-09 72.0 14.3 110 92-210 118-233 (278)
138 PRK14901 16S rRNA methyltransf 98.0 6.6E-05 1.4E-09 79.4 12.3 110 92-204 252-384 (434)
139 TIGR00563 rsmB ribosomal RNA s 98.0 7.6E-05 1.6E-09 78.7 12.6 109 92-205 238-369 (426)
140 PRK14896 ksgA 16S ribosomal RN 97.9 3.6E-05 7.8E-10 75.7 9.1 86 79-176 16-101 (258)
141 PRK13256 thiopurine S-methyltr 97.9 9.1E-05 2E-09 71.3 11.6 102 92-204 43-163 (226)
142 PRK03612 spermidine synthase; 97.9 0.0001 2.3E-09 79.6 13.3 107 92-203 297-414 (521)
143 COG1352 CheR Methylase of chem 97.9 0.00012 2.5E-09 72.3 12.4 129 71-202 75-239 (268)
144 TIGR00446 nop2p NOL1/NOP2/sun 97.9 0.0001 2.3E-09 72.7 11.6 50 92-142 71-120 (264)
145 PRK14903 16S rRNA methyltransf 97.9 9.2E-05 2E-09 78.2 11.7 49 92-141 237-285 (431)
146 PF05724 TPMT: Thiopurine S-me 97.9 2E-05 4.4E-10 75.5 5.9 129 70-204 15-157 (218)
147 COG4122 Predicted O-methyltran 97.9 0.00022 4.8E-09 68.2 12.8 129 70-210 40-171 (219)
148 PRK10901 16S rRNA methyltransf 97.9 0.00016 3.5E-09 76.3 13.1 48 92-141 244-291 (427)
149 PRK15128 23S rRNA m(5)C1962 me 97.9 8.3E-05 1.8E-09 77.6 10.6 121 92-222 220-354 (396)
150 TIGR00478 tly hemolysin TlyA f 97.8 0.00011 2.4E-09 71.0 10.4 99 90-207 73-175 (228)
151 KOG2904 Predicted methyltransf 97.8 6.5E-05 1.4E-09 73.1 8.7 94 76-173 133-229 (328)
152 TIGR02085 meth_trns_rumB 23S r 97.8 0.00018 3.9E-09 74.6 12.7 128 75-222 216-345 (374)
153 PF12147 Methyltransf_20: Puta 97.8 0.00045 9.8E-09 68.1 14.5 110 91-203 134-248 (311)
154 TIGR00755 ksgA dimethyladenosi 97.8 0.00011 2.3E-09 72.0 10.2 61 80-144 17-77 (253)
155 PRK10909 rsmD 16S rRNA m(2)G96 97.8 0.00025 5.3E-09 67.1 11.5 103 93-207 54-161 (199)
156 PRK00274 ksgA 16S ribosomal RN 97.8 8.9E-05 1.9E-09 73.5 8.9 45 92-140 42-86 (272)
157 PRK11783 rlmL 23S rRNA m(2)G24 97.8 6E-05 1.3E-09 84.3 8.5 73 93-173 539-615 (702)
158 TIGR00479 rumA 23S rRNA (uraci 97.8 0.00034 7.3E-09 73.9 13.7 92 77-174 277-370 (431)
159 PRK11727 23S rRNA mA1618 methy 97.8 0.00011 2.5E-09 74.3 9.6 84 92-177 114-200 (321)
160 PRK14904 16S rRNA methyltransf 97.8 0.00017 3.8E-09 76.4 11.3 107 92-204 250-377 (445)
161 PRK14902 16S rRNA methyltransf 97.8 0.00017 3.8E-09 76.4 11.3 76 92-173 250-327 (444)
162 PF01596 Methyltransf_3: O-met 97.7 0.00029 6.2E-09 67.0 11.2 112 92-210 45-160 (205)
163 PRK10611 chemotaxis methyltran 97.7 9.9E-05 2.2E-09 73.6 8.4 110 92-202 115-260 (287)
164 KOG2940 Predicted methyltransf 97.7 5.5E-05 1.2E-09 71.8 6.1 114 94-221 74-187 (325)
165 COG2519 GCD14 tRNA(1-methylade 97.7 0.00039 8.5E-09 67.3 11.6 111 85-206 87-197 (256)
166 PTZ00338 dimethyladenosine tra 97.7 0.00017 3.8E-09 72.3 9.3 56 81-140 25-80 (294)
167 KOG1975 mRNA cap methyltransfe 97.7 0.00028 6.1E-09 70.2 10.3 122 93-220 118-250 (389)
168 PLN02672 methionine S-methyltr 97.7 9.6E-05 2.1E-09 85.1 8.0 48 91-140 117-164 (1082)
169 PRK04148 hypothetical protein; 97.6 0.00038 8.3E-09 61.5 9.2 99 84-202 8-107 (134)
170 PLN02823 spermine synthase 97.6 0.00046 9.9E-09 70.4 10.9 105 92-202 103-218 (336)
171 COG3963 Phospholipid N-methylt 97.6 0.00098 2.1E-08 60.6 11.5 108 92-206 48-158 (194)
172 KOG3178 Hydroxyindole-O-methyl 97.6 0.0011 2.4E-08 66.9 13.0 126 68-209 147-280 (342)
173 PF06080 DUF938: Protein of un 97.5 0.00079 1.7E-08 63.6 10.8 127 75-210 12-147 (204)
174 PLN02589 caffeoyl-CoA O-methyl 97.5 0.0011 2.4E-08 64.8 12.0 91 79-174 69-164 (247)
175 TIGR00095 RNA methyltransferas 97.5 0.003 6.6E-08 59.2 14.1 110 92-207 49-161 (189)
176 PRK00050 16S rRNA m(4)C1402 me 97.4 0.00077 1.7E-08 67.5 9.9 94 81-177 8-101 (296)
177 PF08704 GCD14: tRNA methyltra 97.3 0.0012 2.5E-08 64.6 9.1 109 91-207 39-149 (247)
178 TIGR03439 methyl_EasF probable 97.2 0.0084 1.8E-07 60.8 14.8 116 81-202 67-195 (319)
179 PF03141 Methyltransf_29: Puta 97.1 0.0004 8.7E-09 73.1 3.8 98 92-205 117-220 (506)
180 COG3897 Predicted methyltransf 97.1 0.0017 3.7E-08 60.5 7.3 104 92-208 79-183 (218)
181 KOG1500 Protein arginine N-met 97.1 0.0051 1.1E-07 61.6 10.8 80 86-173 171-250 (517)
182 KOG3191 Predicted N6-DNA-methy 97.0 0.01 2.2E-07 54.8 12.0 79 93-179 44-125 (209)
183 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.0 0.0017 3.7E-08 63.6 7.2 144 61-207 17-202 (256)
184 KOG1499 Protein arginine N-met 97.0 0.0035 7.6E-08 63.4 9.5 78 90-175 58-136 (346)
185 PF11968 DUF3321: Putative met 97.0 0.0028 6E-08 60.3 7.8 92 93-206 52-151 (219)
186 KOG3420 Predicted RNA methylas 97.0 0.0021 4.6E-08 57.1 6.5 88 81-177 37-125 (185)
187 KOG1661 Protein-L-isoaspartate 96.9 0.0052 1.1E-07 58.0 9.4 120 70-202 65-191 (237)
188 PF13679 Methyltransf_32: Meth 96.9 0.012 2.6E-07 52.3 11.4 86 91-180 24-113 (141)
189 PF05185 PRMT5: PRMT5 arginine 96.9 0.0042 9E-08 65.9 9.5 131 57-198 145-291 (448)
190 TIGR02143 trmA_only tRNA (urac 96.9 0.0029 6.2E-08 65.2 7.9 63 73-140 179-241 (353)
191 PF01728 FtsJ: FtsJ-like methy 96.9 0.0059 1.3E-07 56.4 9.3 48 81-129 9-59 (181)
192 KOG3987 Uncharacterized conser 96.8 0.00051 1.1E-08 64.4 1.5 94 92-202 112-205 (288)
193 COG0421 SpeE Spermidine syntha 96.8 0.0076 1.6E-07 60.0 9.8 114 92-211 76-196 (282)
194 COG0030 KsgA Dimethyladenosine 96.8 0.0066 1.4E-07 59.6 8.9 68 78-149 16-83 (259)
195 KOG0820 Ribosomal RNA adenine 96.7 0.0079 1.7E-07 58.9 9.1 59 80-142 46-104 (315)
196 PF01564 Spermine_synth: Sperm 96.7 0.0042 9.2E-08 60.7 7.5 106 92-204 76-191 (246)
197 PRK00536 speE spermidine synth 96.7 0.0092 2E-07 58.8 9.6 95 92-202 72-169 (262)
198 PRK05031 tRNA (uracil-5-)-meth 96.7 0.0054 1.2E-07 63.4 8.0 63 73-140 188-250 (362)
199 TIGR02987 met_A_Alw26 type II 96.5 0.012 2.5E-07 63.9 9.9 51 92-142 31-87 (524)
200 COG0500 SmtA SAM-dependent met 96.4 0.038 8.3E-07 46.4 10.4 105 96-210 52-161 (257)
201 PRK11933 yebU rRNA (cytosine-C 96.4 0.027 5.9E-07 60.1 11.2 50 92-142 113-162 (470)
202 PF08123 DOT1: Histone methyla 96.3 0.037 8.1E-07 52.6 10.8 45 93-139 43-87 (205)
203 KOG3201 Uncharacterized conser 96.3 0.0063 1.4E-07 55.1 5.1 109 93-205 30-141 (201)
204 PF07942 N2227: N2227-like pro 96.2 0.065 1.4E-06 53.0 11.9 121 80-205 40-203 (270)
205 PF09445 Methyltransf_15: RNA 96.1 0.013 2.7E-07 53.7 6.3 44 95-142 2-45 (163)
206 PRK04338 N(2),N(2)-dimethylgua 96.1 0.056 1.2E-06 56.3 11.6 96 94-203 59-157 (382)
207 PF04672 Methyltransf_19: S-ad 96.1 0.064 1.4E-06 52.9 11.2 157 60-220 32-206 (267)
208 PF02384 N6_Mtase: N-6 DNA Met 96.1 0.021 4.5E-07 57.5 8.1 128 92-223 46-203 (311)
209 COG2265 TrmA SAM-dependent met 95.9 0.039 8.5E-07 58.3 9.4 114 70-195 271-386 (432)
210 KOG1663 O-methyltransferase [S 95.8 0.091 2E-06 50.4 10.6 81 91-173 72-156 (237)
211 PF03602 Cons_hypoth95: Conser 95.8 0.024 5.3E-07 52.9 6.5 107 92-208 42-156 (183)
212 PF02527 GidB: rRNA small subu 95.7 0.045 9.7E-07 51.2 8.1 110 95-220 51-162 (184)
213 PF03059 NAS: Nicotianamine sy 95.6 0.056 1.2E-06 53.7 8.8 103 92-204 120-229 (276)
214 TIGR01444 fkbM_fam methyltrans 95.6 0.023 5E-07 49.9 5.5 44 95-140 1-44 (143)
215 PF05958 tRNA_U5-meth_tr: tRNA 95.5 0.03 6.5E-07 57.6 6.9 64 72-140 177-240 (352)
216 PF00398 RrnaAD: Ribosomal RNA 95.5 0.036 7.8E-07 54.6 7.1 64 81-148 19-82 (262)
217 PF01170 UPF0020: Putative RNA 95.4 0.043 9.3E-07 50.9 6.6 83 93-178 29-118 (179)
218 COG0220 Predicted S-adenosylme 95.3 0.17 3.6E-06 48.9 10.6 105 94-204 50-164 (227)
219 PF05148 Methyltransf_8: Hypot 95.2 0.068 1.5E-06 50.7 7.4 90 93-208 73-162 (219)
220 PRK11760 putative 23S rRNA C24 94.9 0.73 1.6E-05 47.1 14.4 111 92-221 211-323 (357)
221 PRK11783 rlmL 23S rRNA m(2)G24 94.9 0.16 3.4E-06 57.2 10.6 79 93-173 191-310 (702)
222 PF02390 Methyltransf_4: Putat 94.8 0.062 1.3E-06 50.7 6.2 105 95-205 20-134 (195)
223 PF10672 Methyltrans_SAM: S-ad 94.8 0.27 5.8E-06 49.2 10.7 115 92-212 123-246 (286)
224 TIGR00308 TRM1 tRNA(guanine-26 94.6 0.42 9.1E-06 49.7 12.1 98 93-203 45-146 (374)
225 PF07091 FmrO: Ribosomal RNA m 94.4 0.051 1.1E-06 52.9 4.4 108 92-211 105-215 (251)
226 PF01269 Fibrillarin: Fibrilla 94.2 0.29 6.4E-06 46.9 9.0 102 92-204 73-178 (229)
227 KOG1331 Predicted methyltransf 94.2 0.061 1.3E-06 53.1 4.5 96 93-204 46-143 (293)
228 KOG2793 Putative N2,N2-dimethy 94.1 0.17 3.7E-06 49.4 7.6 109 87-202 79-197 (248)
229 PF11312 DUF3115: Protein of u 94.1 0.21 4.6E-06 50.2 8.3 119 94-214 88-250 (315)
230 COG1092 Predicted SAM-dependen 94.1 0.9 2E-05 47.4 13.3 113 92-210 217-342 (393)
231 COG1041 Predicted DNA modifica 94.1 0.25 5.5E-06 50.3 8.8 103 93-205 198-311 (347)
232 COG0357 GidB Predicted S-adeno 93.9 0.24 5.3E-06 47.4 8.0 96 93-202 68-166 (215)
233 COG4301 Uncharacterized conser 93.8 1.8 3.8E-05 42.3 13.5 133 67-207 50-197 (321)
234 PRK01544 bifunctional N5-gluta 93.7 0.61 1.3E-05 50.4 11.5 108 90-204 345-462 (506)
235 COG4262 Predicted spermidine s 93.5 0.4 8.6E-06 49.1 9.0 74 94-173 291-372 (508)
236 KOG3045 Predicted RNA methylas 93.4 0.59 1.3E-05 45.8 9.7 100 77-207 168-267 (325)
237 COG4076 Predicted RNA methylas 93.4 0.23 5.1E-06 46.3 6.7 41 94-138 34-74 (252)
238 COG0293 FtsJ 23S rRNA methylas 93.4 1.2 2.6E-05 42.3 11.5 47 81-128 33-80 (205)
239 COG0742 N6-adenine-specific me 92.6 2.4 5.2E-05 39.7 12.2 111 91-208 42-157 (187)
240 PF04816 DUF633: Family of unk 92.5 2 4.2E-05 40.9 11.9 111 96-223 1-114 (205)
241 PF02636 Methyltransf_28: Puta 92.1 0.6 1.3E-05 45.6 8.1 81 92-180 18-109 (252)
242 COG0144 Sun tRNA and rRNA cyto 92.0 1.2 2.7E-05 45.9 10.6 51 92-142 156-206 (355)
243 PF06962 rRNA_methylase: Putat 92.0 0.81 1.8E-05 40.8 7.9 97 120-222 1-111 (140)
244 COG1565 Uncharacterized conser 91.7 1.1 2.4E-05 46.0 9.5 58 85-142 70-133 (370)
245 KOG0024 Sorbitol dehydrogenase 91.3 2 4.4E-05 43.4 10.7 109 93-212 170-282 (354)
246 KOG2187 tRNA uracil-5-methyltr 90.6 0.34 7.3E-06 51.6 4.8 44 93-140 384-427 (534)
247 COG0116 Predicted N6-adenine-s 90.6 0.84 1.8E-05 47.2 7.5 82 89-173 187-306 (381)
248 KOG2651 rRNA adenine N-6-methy 90.5 1.2 2.5E-05 46.0 8.3 64 71-137 131-195 (476)
249 PF02475 Met_10: Met-10+ like- 90.3 0.62 1.3E-05 44.1 5.9 76 93-174 102-177 (200)
250 TIGR00006 S-adenosyl-methyltra 90.2 2.3 4.9E-05 43.0 10.1 67 81-149 9-76 (305)
251 PF03141 Methyltransf_29: Puta 89.8 0.84 1.8E-05 48.6 6.9 112 93-222 366-480 (506)
252 PF05971 Methyltransf_10: Prot 89.4 1 2.3E-05 45.2 7.0 83 93-179 103-190 (299)
253 cd08283 FDH_like_1 Glutathione 88.3 7.1 0.00015 40.3 12.6 44 92-137 184-228 (386)
254 KOG1501 Arginine N-methyltrans 87.9 0.83 1.8E-05 47.8 5.2 65 74-142 49-113 (636)
255 PHA01634 hypothetical protein 87.9 1.1 2.3E-05 39.4 5.1 48 90-140 26-73 (156)
256 KOG4589 Cell division protein 87.4 1.5 3.2E-05 41.1 6.0 43 83-126 59-102 (232)
257 PF11599 AviRa: RRNA methyltra 87.3 1.4 3E-05 42.1 5.9 63 77-139 32-98 (246)
258 KOG4058 Uncharacterized conser 87.2 0.65 1.4E-05 41.7 3.4 59 71-136 55-113 (199)
259 COG2384 Predicted SAM-dependen 87.1 7.3 0.00016 37.4 10.7 111 94-222 18-132 (226)
260 COG1063 Tdh Threonine dehydrog 86.9 9.9 0.00021 39.0 12.6 45 93-139 169-214 (350)
261 PRK10742 putative methyltransf 86.9 2.5 5.4E-05 41.4 7.6 42 95-140 91-132 (250)
262 KOG1269 SAM-dependent methyltr 86.7 1.2 2.7E-05 46.0 5.7 105 91-204 109-215 (364)
263 COG1889 NOP1 Fibrillarin-like 86.2 7.4 0.00016 37.0 10.0 58 88-147 72-130 (231)
264 PF01555 N6_N4_Mtase: DNA meth 85.6 2.7 6E-05 39.2 7.2 41 92-136 191-231 (231)
265 PF01189 Nol1_Nop2_Fmu: NOL1/N 84.3 3.4 7.5E-05 41.2 7.5 50 92-142 85-134 (283)
266 KOG2915 tRNA(1-methyladenosine 83.9 9.8 0.00021 37.8 10.0 103 93-206 106-212 (314)
267 PF13578 Methyltransf_24: Meth 83.9 0.66 1.4E-05 38.5 1.9 97 97-202 1-103 (106)
268 COG0275 Predicted S-adenosylme 83.8 5.6 0.00012 40.0 8.5 70 80-150 11-81 (314)
269 PRK09424 pntA NAD(P) transhydr 83.5 13 0.00028 40.3 11.9 62 73-137 138-207 (509)
270 COG2520 Predicted methyltransf 83.4 8.4 0.00018 39.5 9.9 125 67-208 169-293 (341)
271 COG1189 Predicted rRNA methyla 82.9 3 6.5E-05 40.5 6.1 126 72-212 62-187 (245)
272 PF07757 AdoMet_MTase: Predict 82.1 1.2 2.7E-05 37.8 2.7 43 56-112 36-78 (112)
273 PRK11524 putative methyltransf 82.0 4.7 0.0001 40.1 7.5 56 80-140 197-252 (284)
274 KOG2352 Predicted spermine/spe 80.9 14 0.00031 39.4 10.7 104 94-206 50-163 (482)
275 PF01795 Methyltransf_5: MraW 78.4 8.7 0.00019 38.9 7.9 48 92-141 20-67 (310)
276 KOG2730 Methylase [General fun 77.2 3.5 7.7E-05 39.6 4.4 47 92-142 94-140 (263)
277 KOG1709 Guanidinoacetate methy 76.9 24 0.00052 34.0 9.8 101 92-203 101-205 (271)
278 cd00315 Cyt_C5_DNA_methylase C 76.0 8.3 0.00018 38.2 7.0 73 95-179 2-75 (275)
279 KOG3115 Methyltransferase-like 73.0 2.8 6.1E-05 39.8 2.6 44 94-139 62-105 (249)
280 PRK13699 putative methylase; P 72.5 14 0.00029 35.7 7.3 45 92-140 163-207 (227)
281 KOG2798 Putative trehalase [Ca 71.1 26 0.00057 35.5 9.0 121 80-205 134-297 (369)
282 PRK01747 mnmC bifunctional tRN 69.9 22 0.00047 39.8 9.3 36 92-127 57-102 (662)
283 PF01488 Shikimate_DH: Shikima 69.8 10 0.00022 33.2 5.4 104 88-211 7-114 (135)
284 COG2521 Predicted archaeal met 69.5 11 0.00025 36.6 5.8 42 92-136 134-175 (287)
285 COG1064 AdhP Zn-dependent alco 69.1 33 0.00071 35.2 9.5 93 92-205 166-260 (339)
286 TIGR00027 mthyl_TIGR00027 meth 68.9 67 0.0014 31.6 11.5 128 75-208 64-200 (260)
287 cd05213 NAD_bind_Glutamyl_tRNA 67.7 1.1E+02 0.0024 30.8 13.1 106 85-211 170-278 (311)
288 cd05188 MDR Medium chain reduc 67.1 95 0.0021 29.2 12.1 62 70-137 115-177 (271)
289 PF05206 TRM13: Methyltransfer 66.4 15 0.00032 36.3 6.2 49 80-129 6-58 (259)
290 PF04989 CmcI: Cephalosporin h 64.2 30 0.00065 32.9 7.6 54 69-130 16-72 (206)
291 KOG2918 Carboxymethyl transfer 62.4 80 0.0017 32.1 10.4 120 93-214 88-237 (335)
292 COG0286 HsdM Type I restrictio 61.7 27 0.00058 37.7 7.7 45 94-138 188-234 (489)
293 PF03514 GRAS: GRAS domain fam 59.2 1.5E+02 0.0031 30.9 12.4 133 90-222 108-262 (374)
294 KOG1562 Spermidine synthase [A 58.7 47 0.001 33.5 8.0 124 92-221 121-253 (337)
295 PF01861 DUF43: Protein of unk 58.6 46 0.001 32.5 7.9 78 89-173 41-119 (243)
296 KOG2920 Predicted methyltransf 56.9 15 0.00032 36.6 4.2 39 90-131 114-152 (282)
297 COG0373 HemA Glutamyl-tRNA red 55.3 1.4E+02 0.0029 31.7 11.3 106 87-212 172-280 (414)
298 COG4017 Uncharacterized protei 54.2 1.4E+02 0.0031 28.3 9.9 102 90-220 42-145 (254)
299 TIGR01035 hemA glutamyl-tRNA r 54.0 1.7E+02 0.0037 30.8 12.1 108 86-212 173-283 (417)
300 KOG0821 Predicted ribosomal RN 52.8 31 0.00067 33.3 5.5 69 68-139 26-94 (326)
301 TIGR02356 adenyl_thiF thiazole 51.9 1.4E+02 0.0031 27.9 10.0 32 93-127 21-54 (202)
302 COG3129 Predicted SAM-dependen 51.6 34 0.00075 33.3 5.6 85 92-179 78-166 (292)
303 PRK00045 hemA glutamyl-tRNA re 51.1 2.8E+02 0.006 29.2 13.1 104 89-211 178-285 (423)
304 PLN02668 indole-3-acetate carb 50.4 21 0.00046 37.3 4.4 20 162-181 158-177 (386)
305 PRK12749 quinate/shikimate deh 49.7 65 0.0014 32.2 7.7 86 91-180 122-210 (288)
306 KOG1596 Fibrillarin and relate 47.8 47 0.001 32.6 5.9 36 93-129 157-192 (317)
307 PF05050 Methyltransf_21: Meth 47.0 34 0.00073 30.0 4.7 38 98-137 1-42 (167)
308 cd00401 AdoHcyase S-adenosyl-L 45.8 73 0.0016 33.7 7.6 70 64-136 172-243 (413)
309 KOG1098 Putative SAM-dependent 45.6 39 0.00084 37.3 5.5 45 83-128 34-79 (780)
310 PF03492 Methyltransf_7: SAM d 45.3 23 0.0005 36.2 3.7 97 80-180 4-121 (334)
311 COG3510 CmcI Cephalosporin hyd 43.9 59 0.0013 30.8 5.7 42 92-134 69-113 (237)
312 TIGR00561 pntA NAD(P) transhyd 43.8 1.2E+02 0.0025 33.1 8.9 62 72-136 136-205 (511)
313 COG3315 O-Methyltransferase in 43.5 93 0.002 31.3 7.7 129 73-206 73-210 (297)
314 PHA03108 poly(A) polymerase sm 42.1 47 0.001 33.1 5.1 38 93-130 61-100 (300)
315 PLN00203 glutamyl-tRNA reducta 40.7 2.8E+02 0.0061 30.3 11.3 106 91-211 264-374 (519)
316 TIGR01809 Shik-DH-AROM shikima 39.3 91 0.002 30.9 6.9 78 91-178 123-202 (282)
317 PRK08644 thiamine biosynthesis 39.2 2E+02 0.0043 27.3 8.9 33 93-127 28-61 (212)
318 COG4627 Uncharacterized protei 38.3 12 0.00025 34.2 0.3 44 161-205 42-87 (185)
319 PRK09880 L-idonate 5-dehydroge 36.6 1.9E+02 0.0041 29.0 8.9 44 92-137 169-213 (343)
320 PRK13940 glutamyl-tRNA reducta 34.0 1.5E+02 0.0033 31.2 7.9 100 88-211 176-278 (414)
321 PF06859 Bin3: Bicoid-interact 33.1 16 0.00035 31.2 0.3 40 166-206 1-45 (110)
322 PF04072 LCM: Leucine carboxyl 33.1 2.7E+02 0.0059 25.4 8.6 95 94-192 80-182 (183)
323 TIGR03366 HpnZ_proposed putati 33.0 1.5E+02 0.0032 28.9 7.2 44 92-137 120-164 (280)
324 TIGR02818 adh_III_F_hyde S-(hy 30.9 2.4E+02 0.0051 28.7 8.6 44 92-137 185-229 (368)
325 PF12692 Methyltransf_17: S-ad 29.1 2.2E+02 0.0047 25.9 6.7 45 80-127 17-61 (160)
326 COG1179 Dinucleotide-utilizing 29.0 50 0.0011 32.3 2.9 35 93-128 30-64 (263)
327 PF10354 DUF2431: Domain of un 28.9 3E+02 0.0065 25.1 8.0 121 98-219 2-142 (166)
328 PRK00258 aroE shikimate 5-dehy 27.3 3.9E+02 0.0084 26.3 9.1 77 90-179 120-198 (278)
329 PF01358 PARP_regulatory: Poly 27.3 84 0.0018 31.5 4.2 39 92-130 58-98 (294)
330 cd08237 ribitol-5-phosphate_DH 26.9 3.6E+02 0.0077 27.1 9.0 43 92-136 163-207 (341)
331 PRK12549 shikimate 5-dehydroge 26.5 2.4E+02 0.0053 27.9 7.5 38 90-130 124-163 (284)
332 COG4798 Predicted methyltransf 26.3 2.4E+02 0.0051 27.0 6.7 36 92-128 48-83 (238)
333 PLN02740 Alcohol dehydrogenase 26.3 2.3E+02 0.0049 29.0 7.5 44 92-137 198-242 (381)
334 PF12242 Eno-Rase_NADH_b: NAD( 25.6 3.1E+02 0.0068 21.9 6.3 47 79-126 25-72 (78)
335 TIGR03201 dearomat_had 6-hydro 25.4 3.5E+02 0.0075 27.2 8.6 43 92-137 166-209 (349)
336 KOG2015 NEDD8-activating compl 25.3 3.2E+02 0.007 28.1 7.9 10 94-103 41-50 (422)
337 cd08254 hydroxyacyl_CoA_DH 6-h 24.9 2.5E+02 0.0054 27.5 7.4 41 93-136 166-207 (338)
338 COG0677 WecC UDP-N-acetyl-D-ma 24.9 61 0.0013 34.0 2.9 23 187-211 112-134 (436)
339 PLN02827 Alcohol dehydrogenase 23.9 3.4E+02 0.0074 27.8 8.3 44 92-137 193-237 (378)
340 COG1867 TRM1 N2,N2-dimethylgua 23.9 2.2E+02 0.0048 29.7 6.6 46 93-141 53-99 (380)
341 KOG2018 Predicted dinucleotide 23.6 71 0.0015 32.5 2.9 37 93-130 74-110 (430)
342 TIGR01627 A_thal_3515 uncharac 23.5 3.2E+02 0.007 26.3 7.1 43 92-138 39-81 (225)
343 cd01065 NAD_bind_Shikimate_DH 23.4 4.7E+02 0.01 22.5 8.1 41 90-133 16-58 (155)
344 TIGR03451 mycoS_dep_FDH mycoth 23.3 3E+02 0.0065 27.7 7.7 44 92-137 176-220 (358)
345 COG5379 BtaA S-adenosylmethion 22.9 1.3E+02 0.0028 30.5 4.5 50 92-145 63-112 (414)
346 cd08239 THR_DH_like L-threonin 22.4 4.4E+02 0.0095 26.1 8.6 44 92-137 163-207 (339)
347 KOG2811 Uncharacterized conser 21.7 6.3E+02 0.014 26.5 9.2 130 7-139 86-230 (420)
348 KOG2198 tRNA cytosine-5-methyl 21.6 50 0.0011 34.2 1.5 15 413-433 154-168 (375)
349 PRK06153 hypothetical protein; 21.6 1.2E+02 0.0026 31.8 4.3 34 93-128 176-210 (393)
350 PF04445 SAM_MT: Putative SAM- 21.4 1.6E+02 0.0034 28.7 4.8 41 94-138 77-117 (234)
351 TIGR00675 dcm DNA-methyltransf 21.1 2.5E+02 0.0055 28.3 6.5 41 96-139 1-41 (315)
352 TIGR00936 ahcY adenosylhomocys 20.6 3.2E+02 0.0069 28.8 7.3 62 67-131 168-231 (406)
353 COG0686 Ald Alanine dehydrogen 20.4 6.5E+02 0.014 25.9 8.9 100 90-202 165-266 (371)
354 cd08281 liver_ADH_like1 Zinc-d 20.3 4.5E+02 0.0097 26.6 8.3 44 92-137 191-235 (371)
No 1
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=100.00 E-value=6.7e-74 Score=565.77 Aligned_cols=272 Identities=47% Similarity=0.856 Sum_probs=237.6
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 61 ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 61 e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+++||++++||++|+++++||.||++++|+|.|.+|||+|||||+++||++++|+ ...++++||.|+.|+++++.++++
T Consensus 2 ~a~aY~~~r~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 2 EALAYLAARMPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999999 788999999999999999999987
Q ss_pred CCCCCceecchhHhh-hhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHH
Q 012511 141 PKDLPLIHSYNSIQA-LNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRS 219 (462)
Q Consensus 141 ~~~~~~i~~~~~~~~-l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~ 219 (462)
........ .... ..... ...+.||||++|+|+||++ +.|..++++||+++.++|||||||||.||+.|++||+
T Consensus 81 ~~~~~~~~---~~~~~~~~~~--~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~ 154 (274)
T PF09243_consen 81 GPNNRNAE---WRRVLYRDFL--PFPPDDLVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARD 154 (274)
T ss_pred ccccccch---hhhhhhcccc--cCCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHH
Confidence 54322110 0011 11111 2234599999999999997 8999999999999888999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCCCCcceeeEeeccChhHHHhhhcCCCCC
Q 012511 220 HILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPL 299 (462)
Q Consensus 220 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~~~~ChF~qr~~rp~~~r~~k~~~g~~~ 299 (462)
+|+ +.++||+|||||++.|||..+.+||||+||++|+++++..| ++.
T Consensus 155 ~l~-----------------------------~~~~~v~APCph~~~CP~~~~~~wChf~~r~~~~~~~~~~k---~~~- 201 (274)
T PF09243_consen 155 QLL-----------------------------EKGAHVVAPCPHDGPCPLLASEDWCHFSQRVERSPFHRLAK---SAG- 201 (274)
T ss_pred HHh-----------------------------hCCCceECCCccCCCCCCCCCCCcccceeeeccchhhhhcc---ccc-
Confidence 985 45899999999999999998779999999999999988776 222
Q ss_pred CCcccceeEEEEEEeCCCCCCCCCCCCCcchhhhhhhccCCCCccchhHHHHHHhhhhcccccccccccccccccccccC
Q 012511 300 RGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDD 379 (462)
Q Consensus 300 ~~~ed~kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (462)
.++||+|||||+.+|+++.
T Consensus 202 ~~~e~ekfSYl~~~~~~~~------------------------------------------------------------- 220 (274)
T PF09243_consen 202 LPYEDEKFSYLAKGRGPRA------------------------------------------------------------- 220 (274)
T ss_pred CCccccceeeeeecccccc-------------------------------------------------------------
Confidence 4899999999666554321
Q ss_pred cCCCcccccccccccCcccCCCCccccccCceeeCCcEEEeeccCCCCCCCCCceeEEEEeccCCchhhhhhhhcCCCCC
Q 012511 380 TVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDL 459 (462)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~wpRii~~P~kr~ghV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~~Y~~ARks~wGDl 459 (462)
..|||||+||+||+|||+|||||| +|+|+|+|||||+| ++|++|||+.|||+
T Consensus 221 ---------------------~~~~Rii~~p~~~~~hv~~~~C~~------~G~l~~~~v~K~~g-~~y~~aRk~~wGD~ 272 (274)
T PF09243_consen 221 ---------------------PAWPRIIRPPLKRKGHVICDLCTP------DGQLERVVVTKRHG-ELYRCARKSKWGDL 272 (274)
T ss_pred ---------------------cccchhcchhhccCCcEEEEEECC------CCCEEEEEEcccch-HHHHHHHhccccCC
Confidence 139999999999999999999998 99999999999888 89999999999999
Q ss_pred CC
Q 012511 460 WP 461 (462)
Q Consensus 460 wp 461 (462)
||
T Consensus 273 ~p 274 (274)
T PF09243_consen 273 WP 274 (274)
T ss_pred CC
Confidence 98
No 2
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-68 Score=515.47 Aligned_cols=318 Identities=29% Similarity=0.523 Sum_probs=243.9
Q ss_pred ccCHHHHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHH
Q 012511 56 KYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQ 135 (462)
Q Consensus 56 ~y~~~e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak 135 (462)
..+++++.||++.+||.+|++++++|.+|.++.|+|.|++|||+|.|||+++||++.+||+ ...++.++.|+.+.+++-
T Consensus 77 ~~tdm~V~Ayias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pd-l~sa~ile~sp~lrkV~~ 155 (484)
T COG5459 77 CRTDMAVKAYIASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPD-LKSAVILEASPALRKVGD 155 (484)
T ss_pred ecchHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCC-chhhhhhccCHHHHHHHH
Confidence 3588899999999999999999999999999999999999999999999999999999995 778999999999999988
Q ss_pred HhhcCCCC--CCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 136 SLMQGPKD--LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 136 ~ll~~~~~--~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
.+..+..- .++.... ++.-.-.++ ....|+|||+.+-|.+..+.......|++||+. +||.|||||+|||.||
T Consensus 156 tl~~nv~t~~td~r~s~--vt~dRl~lp-~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 156 TLAENVSTEKTDWRASD--VTEDRLSLP-AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred HHHhhcccccCCCCCCc--cchhccCCC-ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 87765321 1111111 110011222 234677777777676666666677799999997 7899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCC----CCcceeeEeeccChh
Q 012511 212 SIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENS----GKYCHFVQRLQRTTS 287 (462)
Q Consensus 212 ~~I~~aR~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~----~~~ChF~qr~~rp~~ 287 (462)
++|.+||+++|..++.. ++ ....+||+|||||+++||+... .+||||+|++.||+|
T Consensus 233 ~~I~rAR~~ll~~~~~~---------------~e-----~~~~ahiiAPCPH~~~CPl~v~ng~~~~~C~F~q~v~rs~f 292 (484)
T COG5459 233 ERILRARQILLAPGNFP---------------DE-----FNYFAHIIAPCPHQRKCPLQVPNGKDLDWCHFSQRVARSKF 292 (484)
T ss_pred HHHHHHHHHHhcCCCCc---------------cc-----cccceeeeccCCCCCCCCccCCCCccccccchhHhhccCcc
Confidence 99999999999643210 11 2456999999999999999764 389999999999998
Q ss_pred HHHhhhcCCCCCCCcccceeEEEEEEeCCCCCCCCCCCCCcchhhhhhhccCCCCccchhHHHH-HHhhhhccccccccc
Q 012511 288 QRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDL-LRLQAEAEVEPCKKE 366 (462)
Q Consensus 288 ~r~~k~~~g~~~~~~ed~kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 366 (462)
-+.++.-.- ....+...|+|++++|+... +| +.+ .|+.+|++.+.
T Consensus 293 s~~~~~Rlh--r~s~D~s~~~~~~lkr~~~r--p~--------------------------e~~~er~~~DE~~l~---- 338 (484)
T COG5459 293 SIELKKRLH--RTSKDGSQGNASRLKRRAGR--PW--------------------------EILFERSHKDEKFLK---- 338 (484)
T ss_pred hhHHHHHHH--hhhccccccchhhhhhccCC--Ch--------------------------hhhhhhccchHHHHH----
Confidence 877763110 02345678999999987532 22 111 12222322110
Q ss_pred ccccccccccccCcCCCcccccccccccCcccCCCCccccccCceeeCCcEEEeeccCCCCCCCCCceeEEEEeccCCch
Q 012511 367 DLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPT 446 (462)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRii~~P~kr~ghV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~ 446 (462)
+...+.+-..+|||||.||+||+|||+||+|.| +|++|+|+||||+||+
T Consensus 339 -------------------------~~~v~~pt~~~wpRII~pP~kr~GhV~idlC~~------dg~le~~lvtKs~gk~ 387 (484)
T COG5459 339 -------------------------EAAVRRPTANSWPRIIAPPVKRKGHVMIDLCAP------DGELEEWLVTKSDGKQ 387 (484)
T ss_pred -------------------------HHHhcCccccccchhcCCccCCCCeEEEeecCC------cchhhhhcccccccHH
Confidence 000001113589999999999999999999998 9999999999999999
Q ss_pred hhhhhhhcCCCCCCCC
Q 012511 447 LHRLAKKSLWGDLWPF 462 (462)
Q Consensus 447 ~Y~~ARks~wGDlwp~ 462 (462)
+||+||||.||||||.
T Consensus 388 ~yrlARks~wGDlfas 403 (484)
T COG5459 388 IYRLARKSDWGDLFAS 403 (484)
T ss_pred HHHHHHhhccchhhhh
Confidence 9999999999999984
No 3
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-52 Score=420.58 Aligned_cols=300 Identities=29% Similarity=0.533 Sum_probs=246.7
Q ss_pred cccccCcccccCHHHH-HHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEe
Q 012511 47 KSAYGDIGLKYRDDET-IAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVE 125 (462)
Q Consensus 47 ~~~y~~~~~~y~~~e~-~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD 125 (462)
.++|.|..+.|+..+. .+|...++..+|+.+.+++.|+..+-|.|+|..++|||+|.|+..|++...|+.....|++||
T Consensus 154 ~~iy~s~~~~~t~~~s~~~~~~arld~gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vd 233 (491)
T KOG2539|consen 154 KNIYPSQSLEYTSPESLNVYPLARLDHGYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVD 233 (491)
T ss_pred ccccccccccccCccccccccccccccchHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeec
Confidence 4799999999988865 899999999999999999999999999999999999999999999999999998788999999
Q ss_pred CCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCC-CCcccEEEecccccCCCCHHHHHHHHHHHHhc---CCCE
Q 012511 126 PSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKS-EREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDV 199 (462)
Q Consensus 126 ~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~-~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~---~gG~ 199 (462)
.|..|+......+++. .+.+.++.. -...+.+|.. ...||+||++|.|+++.+...|..+++++|+. +|++
T Consensus 234 rs~~~~~~~e~~lr~~~~~g~~~v~~~---~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~ 310 (491)
T KOG2539|consen 234 RSRAMLKQSEKNLRDGSHIGEPIVRKL---VFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYF 310 (491)
T ss_pred cchHHHHHHHHhhcChhhcCchhcccc---chhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCce
Confidence 9999999999888872 233444331 1123334433 44599999999999999999999999999998 4679
Q ss_pred EEEEecCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCCCC---cc
Q 012511 200 LVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGK---YC 276 (462)
Q Consensus 200 LVlVEpGtp~Gf~~I~~aR~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~~~---~C 276 (462)
+||||+|++.||+.+++||+.+|..+.. .. . ....++|||||||+..||+...+. .|
T Consensus 311 lViIe~g~~~g~e~l~eaR~~~l~~~~~----------------vd--~--~~~~~~vlapcPh~l~cPl~~d~~~~~~C 370 (491)
T KOG2539|consen 311 LVIIEKGTTMGLELLTEARQNLLDQEEE----------------VD--Y--EDVTGPVLAPCPHDLRCPLLRDSAVIIVC 370 (491)
T ss_pred EEEEecCCccchhhHHHHHHhcccchhc----------------CC--c--cccccceecCCCcccCCccccCCCccccc
Confidence 9999999999999999999999863310 00 0 124589999999999999976543 69
Q ss_pred eeeEeeccChhHHHhhhcCCCCCCCccc--ceeEEEEEEeCCCCCCCCCCCCCcchhhhhhhccCCCCccchhHHHHHHh
Q 012511 277 HFVQRLQRTTSQRAYKRSKSEPLRGFED--EKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRL 354 (462)
Q Consensus 277 hF~qr~~rp~~~r~~k~~~g~~~~~~ed--~kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (462)
+|+++++|-+. .|..+...++ .+|||+|+.||.+..
T Consensus 371 ~f~~~~~~l~~-------s~~~~~~e~~r~~~~sy~I~e~s~~~~----------------------------------- 408 (491)
T KOG2539|consen 371 TFDARYRPLPK-------SGGKLEDEEDRKSAYSYLILEESSRQS----------------------------------- 408 (491)
T ss_pred ccchhcccccc-------CCCcCchhhhhhhhhHHHHHhhccccc-----------------------------------
Confidence 99999998441 1222211222 248888877766420
Q ss_pred hhhcccccccccccccccccccccCcCCCcccccccccccCcccCCCCccccccCceeeCCcEEEeeccCCCCCCCCCce
Q 012511 355 QAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSF 434 (462)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRii~~P~kr~ghV~ld~Ct~~~~~~~~G~l 434 (462)
+.+|||||+||+||+|||+||+||| +|.+
T Consensus 409 ---------------------------------------------~~~wpRIi~p~~kr~~hv~~dlC~p------~g~~ 437 (491)
T KOG2539|consen 409 ---------------------------------------------TSSWPRIIKPPLKRGGHVTCDLCTP------NGPL 437 (491)
T ss_pred ---------------------------------------------cCCCcccccCccccCCeeEEecCCC------CCCe
Confidence 2479999999999999999999998 8999
Q ss_pred eEEEEeccCCc-hhhhhhhhcCCCCCCCC
Q 012511 435 QHLVFTRSKNP-TLHRLAKKSLWGDLWPF 462 (462)
Q Consensus 435 er~~v~ks~~~-~~Y~~ARks~wGDlwp~ 462 (462)
+|||+|||+++ .+|.+|||+.|||||||
T Consensus 438 q~~~~Tkskhg~dlys~ar~s~wgdl~pl 466 (491)
T KOG2539|consen 438 QRRVLTKSKHGKDLYSCARKSRWGDLLPL 466 (491)
T ss_pred eEEEEecccccHHHHHHhhhhhccccccc
Confidence 99999999887 69999999999999996
No 4
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.1e-18 Score=175.94 Aligned_cols=351 Identities=19% Similarity=0.165 Sum_probs=208.6
Q ss_pred ccceeeecccccccccccceeccccchhhhcCCcccHHhhhhhhhcccccCcccccCHHHHHHHHHhcCchhHHHHHHHH
Q 012511 2 KRKVLRLSESFNAIKGVNLTLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDDETIAYVASRMPAVYSACYRVL 81 (462)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~~~~~~w~~~~~y~~~~~~y~~~e~~AYla~r~p~~Ya~~~~vL 81 (462)
|.+|...+..|+-++..++++..+++..+=+.. .+. +...|+.+.-+. .|.+....+|-...||.......+.+
T Consensus 41 ~~q~~k~~~~~~~~~~~e~qLP~~a~~sl~~~~-~~~-~~~~~~~~~q~~----~l~~~~s~~~~~~~~pe~i~~~~r~v 114 (491)
T KOG2539|consen 41 KGQIRKFREHVGKDKRTEVQLPQQAANSLESTR-LSL-EPQVKKYQHQSQ----QLASYLSSRTHLPIMPEEISNKSRHV 114 (491)
T ss_pred hhhcccchhcccccccccccCchhhhhhhhhhh-hhc-ccchhhHHHHHH----HhhhhhhhhhcCCcChHHHhHHHHHH
Confidence 567889999999999999999988877543322 232 355666655544 37777777888888999998888888
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~ 161 (462)
.+..++ |++.+...||+|.|+++.+|+-..+|+-....+--+-.|..|.-.+...+..+...+
T Consensus 115 ~~~~~~-~~i~e~~sld~~~~~~s~~~~~~~~~~i~~~~~~~iy~s~~~~~t~~~s~~~~~~ar---------------- 177 (491)
T KOG2539|consen 115 IEKGKG-PGIDELASLDVFPGTVSKVEENKFLKEIIYDLHKNIYPSQSLEYTSPESLNVYPLAR---------------- 177 (491)
T ss_pred HHHhcC-CCCCCccccccCCCchhhhhhhhHHHHHHHHHhccccccccccccCccccccccccc----------------
Confidence 877776 788889999999888888887554443111122233444444322221111111111
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc---CCCEEEEEecCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSK 238 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~---~gG~LVlVEpGtp~Gf~~I~~aR~~lL~~~~~~~~~~~~~~~~ 238 (462)
....|-+|+.++.+....+++.+-+++..+|.- .++.++++.++|..+|..|-+.|.++...+.- .+
T Consensus 178 -ld~gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~--lr------- 247 (491)
T KOG2539|consen 178 -LDHGYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKN--LR------- 247 (491)
T ss_pred -cccchHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHh--hc-------
Confidence 122333444444444433333333344444432 12344444555555555555555555432110 00
Q ss_pred cccccccchhhhccCCcEEEcc-CCCCCCCCCCCCC----CcceeeEeeccChhHHHhhhcCCCCC-CCcccceeEEEEE
Q 012511 239 DTNKETSKDLVTLRSGVHIVAP-CPHEGRCPLENSG----KYCHFVQRLQRTTSQRAYKRSKSEPL-RGFEDEKFSFVAF 312 (462)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~vvAP-CpH~~~CPl~~~~----~~ChF~qr~~rp~~~r~~k~~~g~~~-~~~ed~kfSYvvl 312 (462)
+ ....|.+++++ |+|.+.||...+. ..|+|.+-..-.++.|..-.. .+ +......|+||++
T Consensus 248 -----~-----~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~---s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 248 -----D-----GSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPE---SLWRKTDRSGYFLVII 314 (491)
T ss_pred -----C-----hhhcCchhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhH---HHHHhccCCCceEEEE
Confidence 0 02457899999 9999999987653 378888765433333221100 00 0011224667777
Q ss_pred EeCCCCCCCCCCCCCcchhhhhhhccCCCCccchhHHHHHHhhhhcccccccccccccccccccccCcCCCccccccccc
Q 012511 313 RRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEE 392 (462)
Q Consensus 313 rkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (462)
.+|. +|+++.+.++..-.-+++.++||++. .
T Consensus 315 e~g~---------~~g~e~l~eaR~~~l~~~~~vd~~~~--------------------~-------------------- 345 (491)
T KOG2539|consen 315 EKGT---------TMGLELLTEARQNLLDQEEEVDYEDV--------------------T-------------------- 345 (491)
T ss_pred ecCC---------ccchhhHHHHHHhcccchhcCCcccc--------------------c--------------------
Confidence 6665 46677777532222222222332111 0
Q ss_pred ccCcccCCCCccccccCceeeCCcEEEeeccCCCCCCCCCceeEEEEeccCCchhhhhhhhcCCCCCC
Q 012511 393 ETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLW 460 (462)
Q Consensus 393 ~~~~~~~~~~wpRii~~P~kr~ghV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~~Y~~ARks~wGDlw 460 (462)
.... -.||+.+..|+++.+||+. +|+- +-.+++ +|+|.++.+|+.+|||.|+++.
T Consensus 346 ~~vl----apcPh~l~cPl~~d~~~~~-~C~f------~~~~~~--l~~s~~~~~~e~~r~~~~sy~I 400 (491)
T KOG2539|consen 346 GPVL----APCPHDLRCPLLRDSAVII-VCTF------DARYRP--LPKSGGKLEDEEDRKSAYSYLI 400 (491)
T ss_pred ccee----cCCCcccCCccccCCCccc-cccc------chhccc--cccCCCcCchhhhhhhhhHHHH
Confidence 0111 2599999999999999999 9996 777888 9999999999999999999875
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.49 E-value=6e-14 Score=135.67 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=79.7
Q ss_pred hcccccCcccccCHH-HHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEE
Q 012511 46 IKSAYGDIGLKYRDD-ETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLV 124 (462)
Q Consensus 46 ~~~~y~~~~~~y~~~-e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~V 124 (462)
++.+|..++..|+-. ....+-..+.... .++.. +....+.+|||+|||||..+..++...+ ...+|+++
T Consensus 9 v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~-----~~~~~----~~~~~g~~vLDv~~GtG~~~~~l~~~~~-~~~~v~~v 78 (233)
T PF01209_consen 9 VRKMFDRIAPRYDRMNDLLSFGQDRRWRR-----KLIKL----LGLRPGDRVLDVACGTGDVTRELARRVG-PNGKVVGV 78 (233)
T ss_dssp ----------------------------S-----HHHHH----HT--S--EEEEET-TTSHHHHHHGGGSS----EEEEE
T ss_pred HHHHHHHHHHHhCCCccccCCcHHHHHHH-----HHHhc----cCCCCCCEEEEeCCChHHHHHHHHHHCC-CccEEEEe
Confidence 667888888888765 2333332222111 12221 1223467999999999999988877654 34699999
Q ss_pred eCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 125 EPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 125 D~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|+|+.|++.|++.+.... ++.++.. ....+|..+++||+|++++.|+++++....+.-+.++++ |||.|+|
T Consensus 79 D~s~~ML~~a~~k~~~~~~~~i~~v~~------da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~i 151 (233)
T PF01209_consen 79 DISPGMLEVARKKLKREGLQNIEFVQG------DAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK-PGGRLVI 151 (233)
T ss_dssp ES-HHHHHHHHHHHHHTT--SEEEEE-------BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE-EEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhCCCCeeEEEc------CHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEE
Confidence 999999999999876532 3333322 123466778999999999999999987776767777775 7999999
Q ss_pred EecCCCCch
Q 012511 203 VEPGTPQGS 211 (462)
Q Consensus 203 VEpGtp~Gf 211 (462)
+|.+.|...
T Consensus 152 le~~~p~~~ 160 (233)
T PF01209_consen 152 LEFSKPRNP 160 (233)
T ss_dssp EEEEB-SSH
T ss_pred eeccCCCCc
Confidence 999999874
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=1.1e-12 Score=126.50 Aligned_cols=151 Identities=16% Similarity=0.207 Sum_probs=109.9
Q ss_pred hhcccccCcccccCHHH-HHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEE
Q 012511 45 KIKSAYGDIGLKYRDDE-TIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNL 123 (462)
Q Consensus 45 ~~~~~y~~~~~~y~~~e-~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~ 123 (462)
.++.+|..+...|+-.. ...+ ..-...-.++...+...++.+|||+|||||..+..+++..+ ..+|++
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~---------g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g--~g~v~~ 80 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSF---------GLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG--TGEVVG 80 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccC---------cchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC--CceEEE
Confidence 45666777776776553 1111 11112223333333323578999999999999999998776 579999
Q ss_pred EeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEE
Q 012511 124 VEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLV 201 (462)
Q Consensus 124 VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LV 201 (462)
+|+|+.|++.|++.+.+.. ++.++..+ ...+|+++++||+|+++|.|.++++.+..+.-+.++++ |||.++
T Consensus 81 ~D~s~~ML~~a~~k~~~~~~~~i~fv~~d------Ae~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK-pgG~~~ 153 (238)
T COG2226 81 LDISESMLEVAREKLKKKGVQNVEFVVGD------AENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK-PGGRLL 153 (238)
T ss_pred EECCHHHHHHHHHHhhccCccceEEEEec------hhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc-CCeEEE
Confidence 9999999999999987643 23334322 23578899999999999999999988887777777776 799999
Q ss_pred EEecCCCCchHH
Q 012511 202 LVEPGTPQGSSI 213 (462)
Q Consensus 202 lVEpGtp~Gf~~ 213 (462)
++|.+.|.....
T Consensus 154 vle~~~p~~~~~ 165 (238)
T COG2226 154 VLEFSKPDNPVL 165 (238)
T ss_pred EEEcCCCCchhh
Confidence 999999876443
No 7
>PRK06202 hypothetical protein; Provisional
Probab=99.44 E-value=2.5e-12 Score=124.05 Aligned_cols=162 Identities=15% Similarity=0.217 Sum_probs=101.9
Q ss_pred eeccccchhhhcCCcccHHhhhhhhhcccccCcccccCHHHHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEEC
Q 012511 21 TLTESTSKELFEDPLKSVEQSKRWKIKSAYGDIGLKYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFG 100 (462)
Q Consensus 21 ~~~~~~~~~l~~d~~~~~~~~~~w~~~~~y~~~~~~y~~~e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG 100 (462)
...|++..||||++..+.+.+.. .|........+...+...+... +..+ +...++.+|||+|
T Consensus 7 ~~~r~~~~e~~d~~~~~~~~~~~------------~~~~~~~~n~~~~~~~~~~~~~---~~~~---l~~~~~~~iLDlG 68 (232)
T PRK06202 7 SRRRDRQPEVMDDPGCDPARLDR------------TYAGFRRVNRIVAGWRGLYRRL---LRPA---LSADRPLTLLDIG 68 (232)
T ss_pred hccccCChhhccCCCcCHHHHHH------------HHHHHHHHHHHhcccHHHHHHH---HHHh---cCCCCCcEEEEec
Confidence 46799999999998776555544 3333322212222222222222 2111 1123467999999
Q ss_pred CchhHHHHHHHHhCCC--CccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEecccccC
Q 012511 101 AGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGE 178 (462)
Q Consensus 101 ~G~G~~~~al~~~~~~--~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~e 178 (462)
||+|..+..++...+. ...+|+++|+|+.|++.|++..... ++.+.... . ..++..+++||+|+++++|+|
T Consensus 69 cG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~-----~-~~l~~~~~~fD~V~~~~~lhh 141 (232)
T PRK06202 69 CGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-GVTFRQAV-----S-DELVAEGERFDVVTSNHFLHH 141 (232)
T ss_pred cCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-CCeEEEEe-----c-ccccccCCCccEEEECCeeec
Confidence 9999988777654321 1248999999999999998865432 23222111 1 112334578999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 179 VPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 179 l~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+++ .+...+++.+.+...|.+++.+...+
T Consensus 142 ~~d-~~~~~~l~~~~r~~~~~~~i~dl~~~ 170 (232)
T PRK06202 142 LDD-AEVVRLLADSAALARRLVLHNDLIRS 170 (232)
T ss_pred CCh-HHHHHHHHHHHHhcCeeEEEeccccC
Confidence 974 44567888888776677777776555
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.38 E-value=1.1e-11 Score=120.83 Aligned_cols=144 Identities=17% Similarity=0.257 Sum_probs=99.6
Q ss_pred cCHHHHHHH--HHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHH
Q 012511 57 YRDDETIAY--VASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAG 134 (462)
Q Consensus 57 y~~~e~~AY--la~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~A 134 (462)
+++..+..| ...++-+.|..+..++..+..+... ...+|||+|||+|..+..++........+++++|+|+.|++.|
T Consensus 20 f~~~~a~~yd~~~~~~~p~y~~~~~~~~~~~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A 98 (247)
T PRK15451 20 FDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC 98 (247)
T ss_pred cChHHHHhhhhHHHhcCCChHHHHHHHHHHHHHhCC-CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH
Confidence 444334344 2456678999998888877665432 3579999999999988777764322346899999999999999
Q ss_pred HHhhcCCC---CCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 135 QSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 135 k~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
+..+.... ++.++.. ++. .++ ...+|+|+++++|++++ ..++..+++++.+. +||.|++.|.-.+.
T Consensus 99 ~~~~~~~~~~~~v~~~~~-----d~~-~~~--~~~~D~vv~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~ 169 (247)
T PRK15451 99 RRHIDAYKAPTPVDVIEG-----DIR-DIA--IENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKFSFE 169 (247)
T ss_pred HHHHHhcCCCCCeEEEeC-----Chh-hCC--CCCCCEEehhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 99886532 2222221 122 122 23589999999999997 55566666666664 79999999965544
Q ss_pred c
Q 012511 210 G 210 (462)
Q Consensus 210 G 210 (462)
+
T Consensus 170 ~ 170 (247)
T PRK15451 170 D 170 (247)
T ss_pred c
Confidence 4
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.37 E-value=4.2e-12 Score=107.74 Aligned_cols=105 Identities=24% Similarity=0.266 Sum_probs=75.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC---CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~---~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+|||+|||+|..+..+++.++ ..++++||.|++|++.|++.+... .++.+++.. + ........+||+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d-----~-~~~~~~~~~~D~ 73 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFP--GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGD-----A-EFDPDFLEPFDL 73 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESC-----C-HGGTTTSSCEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECc-----c-ccCcccCCCCCE
Confidence 47999999999999998888654 468999999999999999988321 233333322 2 111223457999
Q ss_pred EEecc-cccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 170 VIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 170 Vias~-vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
|++.. +++++...+++..+++++++. |||.|||-++
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999 677665455666667766664 7999998653
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.36 E-value=2.6e-11 Score=119.32 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=86.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC-----CCCCCceecchhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG-----PKDLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~-----~~~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
++.+|||+|||+|..+..+.+.++ ...+|+++|+|++|++.|++.... ..++.++.. +. ..++..+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~-~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~-----d~-~~lp~~~~s 145 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVG-SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG-----DA-TDLPFDDCY 145 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc-----cc-ccCCCCCCC
Confidence 457999999999998877777554 235899999999999999876431 112222221 12 234556778
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
||+|+++++|+++++....+.-+.++++ |||.|+++|...+... .+....+++
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~d~~~~~~~-~~~~~~~~~ 198 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSILDFNKSTQP-FTTSMQEWM 198 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcC-cCcEEEEEECCCCCcH-HHHHHHHHH
Confidence 9999999999999987776666666665 7999999999887652 233334443
No 11
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.34 E-value=4.1e-11 Score=116.13 Aligned_cols=143 Identities=18% Similarity=0.283 Sum_probs=98.1
Q ss_pred ccCHHHHHHHHH--hcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHH
Q 012511 56 KYRDDETIAYVA--SRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRA 133 (462)
Q Consensus 56 ~y~~~e~~AYla--~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~ 133 (462)
.|++..+..|-. .+.-+.|..+...+..+..+... ...+|||+|||+|..+..+++.+.....+++++|+|+.|++.
T Consensus 16 ~~~~~~a~~y~~~~~~~~p~y~~~~~~~~~l~~~~~~-~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~ 94 (239)
T TIGR00740 16 IFDENVAEVFPDMIQRSVPGYSNIITAIGMLAERFVT-PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER 94 (239)
T ss_pred ccChHHHHhCcchhhccCCCHHHHHHHHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence 344444444542 23345687888877777765532 446999999999999888887653235689999999999999
Q ss_pred HHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 134 GQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 134 Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
|++.+..... +.++.. ++. .++ ...+|+|+++++|++++ +.++..+++++.+. +||.|++.|+..+
T Consensus 95 a~~~~~~~~~~~~v~~~~~-----d~~-~~~--~~~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 95 CRQHIAAYHSEIPVEILCN-----DIR-HVE--IKNASMVILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred HHHHHHhcCCCCCeEEEEC-----Chh-hCC--CCCCCEEeeecchhhCC-HHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 9988765321 222221 222 122 23589999999999996 55566666666654 7999999997543
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=2.5e-11 Score=118.91 Aligned_cols=122 Identities=22% Similarity=0.270 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecc
Q 012511 74 YSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSY 150 (462)
Q Consensus 74 Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~ 150 (462)
++.+.+.+.++...++ ..+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.+...+ ++.++...
T Consensus 27 ~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~----g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d 101 (255)
T PRK11036 27 QAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL----GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCA 101 (255)
T ss_pred HHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcC
Confidence 3445555666666665 35689999999999988887763 4689999999999999998876532 22222211
Q ss_pred hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 151 NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 151 ~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
..++. +...++||+|++..+|++++++...+..+.++++ |||.|+++...
T Consensus 102 --~~~l~---~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~n 151 (255)
T PRK11036 102 --AQDIA---QHLETPVDLILFHAVLEWVADPKSVLQTLWSVLR-PGGALSLMFYN 151 (255)
T ss_pred --HHHHh---hhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcC-CCeEEEEEEEC
Confidence 12221 1235689999999999999888776666777765 79999987654
No 13
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.27 E-value=7.2e-11 Score=112.03 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=81.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..+...++ ..++++||+|+.|++.|++.+.+ ..++.. ++.. +...++||+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~--~~~v~giDiS~~~l~~A~~~~~~---~~~~~~-----d~~~--~~~~~sfD~V~ 110 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLP--FKHIYGVEINEYAVEKAKAYLPN---INIIQG-----SLFD--PFKDNFFDLVL 110 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHhhCCC---CcEEEe-----eccC--CCCCCCEEEEE
Confidence 457999999999999888887654 35899999999999999875432 222221 1221 34567999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
++++|+|++ ++....+++++.+..+++++|.|.-.|..
T Consensus 111 ~~~vL~hl~-p~~~~~~l~el~r~~~~~v~i~e~~~~~~ 148 (204)
T TIGR03587 111 TKGVLIHIN-PDNLPTAYRELYRCSNRYILIAEYYNPSP 148 (204)
T ss_pred ECChhhhCC-HHHHHHHHHHHHhhcCcEEEEEEeeCCCc
Confidence 999999996 77888899999988888999988655443
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.26 E-value=7.5e-11 Score=113.38 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=81.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++.++. ..+|+++|+|+.|++.|+..+.... ++.++.. +.. .++...++||+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~-~~~~~~~~fD~ 117 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGP-EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG-----NAM-ELPFDDNSFDY 117 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe-----chh-cCCCCCCCccE
Confidence 4579999999999999988877642 4589999999999999998875432 2222221 111 13334578999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
|+++++++++++....+..+.++++ +||.++++|++.+.-
T Consensus 118 V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 118 VTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCLETSQPTI 157 (231)
T ss_pred EEEecccccCCCHHHHHHHHHHHcC-cCeEEEEEECCCCCC
Confidence 9999999999877665555555554 799999999887653
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.26 E-value=8.4e-11 Score=115.15 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=80.9
Q ss_pred HHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 83 EVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 83 eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
.+...++...+.+|||+|||+|..+..+...++ ..+|+++|+|+.|++.|+.. ++.++.. ++. .++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p--~~~v~gvD~s~~~~~~a~~~-----~~~~~~~-----d~~-~~~- 85 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWP--GAVIEALDSSPEMVAAARER-----GVDARTG-----DVR-DWK- 85 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHhc-----CCcEEEc-----Chh-hCC-
Confidence 344445444568999999999999998888775 35899999999999999752 2333322 222 122
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
..++||+|+++++|+++++....+..+.++++ |||.|++..++.
T Consensus 86 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~ 129 (255)
T PRK14103 86 PKPDTDVVVSNAALQWVPEHADLLVRWVDELA-PGSWIAVQVPGN 129 (255)
T ss_pred CCCCceEEEEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEEcCCC
Confidence 34689999999999999977766666666665 799999987764
No 16
>PRK05785 hypothetical protein; Provisional
Probab=99.25 E-value=7.6e-11 Score=113.62 Aligned_cols=112 Identities=16% Similarity=0.288 Sum_probs=81.8
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
++..+....+ .+.+|||+|||||..+..+.+.. ..+|+++|+|++|++.|+... ..+.. +. ..
T Consensus 41 ~~~~l~~~~~--~~~~VLDlGcGtG~~~~~l~~~~---~~~v~gvD~S~~Ml~~a~~~~------~~~~~-----d~-~~ 103 (226)
T PRK05785 41 LVKTILKYCG--RPKKVLDVAAGKGELSYHFKKVF---KYYVVALDYAENMLKMNLVAD------DKVVG-----SF-EA 103 (226)
T ss_pred HHHHHHHhcC--CCCeEEEEcCCCCHHHHHHHHhc---CCEEEEECCCHHHHHHHHhcc------ceEEe-----ch-hh
Confidence 4444444333 25799999999999988887754 248999999999999998631 12221 12 13
Q ss_pred cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
+|..+++||+|+++++|+++++....+..+.++++ + .++++|.++|.+.
T Consensus 104 lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLk-p--~~~ile~~~p~~~ 152 (226)
T PRK05785 104 LPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR-K--QVGFIAMGKPDNV 152 (226)
T ss_pred CCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhc-C--ceEEEEeCCCCcH
Confidence 56677899999999999999988877777777776 3 4667888888764
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.21 E-value=6.1e-11 Score=106.83 Aligned_cols=106 Identities=21% Similarity=0.354 Sum_probs=78.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccC--CCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDIS--KSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~--~~~~~f 167 (462)
+..+|||+|||+|..+..+++... ...++++||.|++|++.|+.+++... ++.++.. ++.. ++ .. .+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~-~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~-----d~~~-l~~~~~-~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN-PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQG-----DIED-LPQELE-EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST-TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEES-----BTTC-GCGCSS-TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC-CCCEEEEEECcHHHHHHhhcccccccccccceEEe-----ehhc-cccccC-CCe
Confidence 357999999999999999885433 25689999999999999999876432 2333322 2222 32 12 689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|+|++..+++++.+....+..+.++++ ++|.+++.++.
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 999999999999877666666666665 59999999887
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.18 E-value=2.6e-10 Score=107.59 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=71.4
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
..+.+|||+|||+|..+..+++ ...+|+++|.|+.|++.+++++.... ++..+. .++.. .+. ..+||
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~----~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~-----~d~~~-~~~-~~~fD 97 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAA----NGFDVTAWDKNPMSIANLERIKAAENLDNLHTAV-----VDLNN-LTF-DGEYD 97 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHH----CCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEe-----cChhh-CCc-CCCcC
Confidence 3468999999999998887776 24589999999999999998775432 121111 12221 222 35799
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEe
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
+|++++++++++ ...+..+++++.+. +||++++++
T Consensus 98 ~I~~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 98 FILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EEEEecchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999886 55555555555443 799987765
No 19
>PLN02244 tocopherol O-methyltransferase
Probab=99.18 E-value=2.6e-10 Score=116.46 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=85.6
Q ss_pred HHHHHHHHHCCC-----CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecc
Q 012511 79 RVLCEVRRRLPG-----FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSY 150 (462)
Q Consensus 79 ~vL~eL~~rlp~-----~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~ 150 (462)
+.+.++...++. ..+.+|||+|||+|..+..+++.++ .+|++||+|+.|++.|+++.+... ++.++..
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g---~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~- 175 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG---ANVKGITLSPVQAARANALAAAQGLSDKVSFQVA- 175 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc-
Confidence 345555554432 3568999999999999888887553 489999999999999998875432 1222211
Q ss_pred hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 151 NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 151 ~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+.. .++...++||+|++..+++|+++....+..+.++++ +||.|+|++..
T Consensus 176 ----D~~-~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~ 225 (340)
T PLN02244 176 ----DAL-NQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTWC 225 (340)
T ss_pred ----Ccc-cCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEec
Confidence 221 244556799999999999999987766666666665 79999998754
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.18 E-value=1.1e-10 Score=111.31 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=77.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+...+|||+|||.|..+..++. ....|+++|.|+.+++.|+....... .+.+.. ...+++. ...++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr----~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~--~~~edl~----~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLAR----LGASVTGIDASEKPIEVAKLHALESGVNIDYRQ--ATVEDLA----SAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHH----CCCeeEEecCChHHHHHHHHhhhhccccccchh--hhHHHHH----hcCCCccE
Confidence 4568999999999988887776 35799999999999999997655432 222221 1122332 23379999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+|..||.|+++++..+..+.+|.+ |||.+++-.+
T Consensus 128 V~cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STi 162 (243)
T COG2227 128 VTCMEVLEHVPDPESFLRACAKLVK-PGGILFLSTI 162 (243)
T ss_pred EEEhhHHHccCCHHHHHHHHHHHcC-CCcEEEEecc
Confidence 9999999999999986666777765 7999998544
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.18 E-value=8.3e-11 Score=95.85 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=68.8
Q ss_pred EEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEecccc
Q 012511 97 LDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 176 (462)
Q Consensus 97 LDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL 176 (462)
||+|||+|..+..+.+. ...+|+++|+|++|++.+++...... ..++.. +.. .++.++++||+|++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~~~~~~~~~~-~~~~~~-----d~~-~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR---GGASVTGIDISEEMLEQARKRLKNEG-VSFRQG-----DAE-DLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT---TTCEEEEEES-HHHHHHHHHHTTTST-EEEEES-----BTT-SSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc---cCCEEEEEeCCHHHHHHHHhcccccC-chheee-----hHH-hCccccccccccccccce
Confidence 89999999999888885 25799999999999999999876532 222221 122 356678899999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 177 GEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 177 ~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+++++....+..+.++++ +||.++|
T Consensus 71 ~~~~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp GGSSHHHHHHHHHHHHEE-EEEEEEE
T ss_pred eeccCHHHHHHHHHHHcC-cCeEEeC
Confidence 999655555566666665 6999986
No 22
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.17 E-value=1.4e-10 Score=117.22 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=78.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+..++. ...+|++||+|++|++.|+...+... ++.++... .. .++...++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~----~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~d-----ae-~l~~~~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR----MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTT-----AE-KLADEGRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecC-----HH-HhhhccCCCC
Confidence 456999999999998877765 24589999999999999997654221 23233221 11 2333457899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+|++.++|+|++++...+..+.++++ |||.++|....
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~n 237 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTI-PNGATVLSTIN 237 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 99999999999999888888888886 79999998764
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.16 E-value=3.2e-10 Score=106.75 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=70.3
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccE
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+.+|||+|||+|..+..+++. ..+|+++|.|+.|++.++++.... ++. +... ..++. ..+ ...+||+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~----g~~V~~iD~s~~~l~~a~~~~~~~-~~~-v~~~--~~d~~-~~~-~~~~fD~ 97 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA----GYDVRAWDHNPASIASVLDMKARE-NLP-LRTD--AYDIN-AAA-LNEDYDF 97 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHHh-CCC-ceeE--eccch-hcc-ccCCCCE
Confidence 345689999999999988877762 358999999999999998876532 222 1100 11121 112 2357999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHh--cCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~--~~gG~LVlVE 204 (462)
|+++.++++++ ...+..+++++.+ ++||++++++
T Consensus 98 I~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 98 IFSTVVFMFLQ-AGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred EEEecccccCC-HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99999999985 4444444554444 2799977765
No 24
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.16 E-value=1e-09 Score=106.99 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=80.8
Q ss_pred HHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 83 EVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 83 eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
.|...++...+.+|||+|||+|..+..+.. ...+++++|+|+.|++.|+..... ..++.. ++. .++.
T Consensus 33 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~~D~s~~~l~~a~~~~~~---~~~~~~-----d~~-~~~~ 99 (251)
T PRK10258 33 ALLAMLPQRKFTHVLDAGCGPGWMSRYWRE----RGSQVTALDLSPPMLAQARQKDAA---DHYLAG-----DIE-SLPL 99 (251)
T ss_pred HHHHhcCccCCCeEEEeeCCCCHHHHHHHH----cCCeEEEEECCHHHHHHHHhhCCC---CCEEEc-----Ccc-cCcC
Confidence 344455544567999999999988777665 246899999999999999876532 122221 222 2344
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.+.+||+|+++.+++++++....+..+.++++ +||.|++..++.
T Consensus 100 ~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~ 143 (251)
T PRK10258 100 ATATFDLAWSNLAVQWCGNLSTALRELYRVVR-PGGVVAFTTLVQ 143 (251)
T ss_pred CCCcEEEEEECchhhhcCCHHHHHHHHHHHcC-CCeEEEEEeCCC
Confidence 56789999999999999887776666666665 699999988764
No 25
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.15 E-value=5.1e-12 Score=105.26 Aligned_cols=99 Identities=24% Similarity=0.265 Sum_probs=55.1
Q ss_pred EEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEecccc
Q 012511 97 LDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 176 (462)
Q Consensus 97 LDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL 176 (462)
||+|||+|..+..+.+.++ ..+|+++|+|+.|++.|++.+............ ............++||+|+++++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~--~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP--DARYTGVDISPSMLERARERLAELGNDNFERLR--FDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE----SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEE--eecCChhhcccccccceehhhhhH
Confidence 8999999999988888764 579999999999998877766543321111100 000110001123599999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEE
Q 012511 177 GEVPSLQDRITIVRQLWDLTRDVL 200 (462)
Q Consensus 177 ~el~~~~~r~~~i~~Lw~~~gG~L 200 (462)
+++++....+..+.++++ |||.|
T Consensus 77 ~~l~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-T-SS-EE
T ss_pred hhhhhHHHHHHHHHHHcC-CCCCC
Confidence 999766655555555554 68876
No 26
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.14 E-value=8.2e-10 Score=105.81 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=81.2
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+.+|||+|||+|..+..++...+ ..+++++|+|+.|++.++..+.. ++.++.. ++. ..+...++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~--~~~~~~~-----d~~-~~~~~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP--QAEFIALDISAGMLAQAKTKLSE--NVQFICG-----DAE-KLPLEDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC--CCcEEEEeChHHHHHHHHHhcCC--CCeEEec-----chh-hCCCCCCceeEE
Confidence 4568999999999998888887664 35699999999999999876642 2333322 222 123345689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+++++|+++.+....+..+.++++ +||.|++.+++..
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~~~~~ 139 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLK-PGGLLAFSTFGPG 139 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEeCCcc
Confidence 999999999888777777777776 6999999887654
No 27
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.13 E-value=1e-10 Score=105.04 Aligned_cols=100 Identities=25% Similarity=0.323 Sum_probs=71.7
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+.+|||+|||+|..+..+.+ + ..+++++|+|+.|++. . ...... .. .. ......++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~-~---~~~~~g~D~~~~~~~~-----~---~~~~~~--~~---~~-~~~~~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAK-R---GFEVTGVDISPQMIEK-----R---NVVFDN--FD---AQ-DPPFPDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHH-T---TSEEEEEESSHHHHHH-----T---TSEEEE--EE---CH-THHCHSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHH-h---CCEEEEEECCHHHHhh-----h---hhhhhh--hh---hh-hhhccccchhhH
Confidence 4568999999999998888866 3 2389999999999987 1 111110 00 00 112346799999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+++++|+++++....+..+.++++ |||++++..+....
T Consensus 83 ~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 83 ICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNRDD 120 (161)
T ss_dssp EEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBTTS
T ss_pred hhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCCcc
Confidence 999999999976665555555554 69999999987644
No 28
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=2.8e-10 Score=105.54 Aligned_cols=133 Identities=18% Similarity=0.321 Sum_probs=91.8
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCC-CccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPR-SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 158 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~-~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~ 158 (462)
+|+.+..-++...-..||++|||||+.. .+++. ...+||++|+|+.|.+++.+.+.......+.. +-.. ...
T Consensus 64 lFs~i~~~~gk~~K~~vLEvgcGtG~Nf----kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~--fvva-~ge 136 (252)
T KOG4300|consen 64 LFSGIYYFLGKSGKGDVLEVGCGTGANF----KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVER--FVVA-DGE 136 (252)
T ss_pred HHhhhHHHhcccCccceEEecccCCCCc----ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEE--EEee-chh
Confidence 4444443333222357899999999976 33331 46799999999999999988776543221110 0011 122
Q ss_pred ccC-CCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC-CCchHHHHHHHHHHH
Q 012511 159 DIS-KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT-PQGSSIISQMRSHIL 222 (462)
Q Consensus 159 ~l~-~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt-p~Gf~~I~~aR~~lL 222 (462)
+++ ..+.+||.||++++|-...++.+.+..++++++ |||.++++|++. +.|| +..+-|..+
T Consensus 137 ~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifiEHva~~y~~--~n~i~q~v~ 199 (252)
T KOG4300|consen 137 NLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGEYGF--WNRILQQVA 199 (252)
T ss_pred cCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEEecccccchH--HHHHHHHHh
Confidence 344 357899999999999999999999999999997 799999999976 3343 555555544
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.12 E-value=1e-09 Score=107.39 Aligned_cols=112 Identities=21% Similarity=0.360 Sum_probs=79.6
Q ss_pred HHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 83 EVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 83 eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
++...++...+.+|||+|||+|..+..++..++ ..++++||+|+.|++.|++.+.+ +.++.. ++.. +.
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~~v~gvD~s~~~i~~a~~~~~~---~~~~~~-----d~~~-~~- 89 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWP--AARITGIDSSPAMLAEARSRLPD---CQFVEA-----DIAS-WQ- 89 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhCCC---CeEEEC-----chhc-cC-
Confidence 333444434568999999999999888887664 35899999999999999876533 222221 1211 11
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
...+||+|+++++|+++++....+.-+.++++ +||.+++.-+++
T Consensus 90 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~~~~ 133 (258)
T PRK01683 90 PPQALDLIFANASLQWLPDHLELFPRLVSLLA-PGGVLAVQMPDN 133 (258)
T ss_pred CCCCccEEEEccChhhCCCHHHHHHHHHHhcC-CCcEEEEECCCC
Confidence 23589999999999999877665566666665 699998865554
No 30
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.11 E-value=1.4e-09 Score=107.24 Aligned_cols=125 Identities=14% Similarity=0.204 Sum_probs=83.1
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
.|+....+..++..+ +..++.+|||+|||+|..+..++..+ ..+|+++|+|+.|++.|+..+....++.++..
T Consensus 34 ~~gg~~~~~~~l~~l----~l~~~~~VLDiGcG~G~~a~~la~~~---~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~ 106 (263)
T PTZ00098 34 SSGGIEATTKILSDI----ELNENSKVLDIGSGLGGGCKYINEKY---GAHVHGVDICEKMVNIAKLRNSDKNKIEFEAN 106 (263)
T ss_pred CCCchHHHHHHHHhC----CCCCCCEEEEEcCCCChhhHHHHhhc---CCEEEEEECCHHHHHHHHHHcCcCCceEEEEC
Confidence 355555555555443 22345799999999998877766543 24899999999999999987654222322221
Q ss_pred chhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 150 YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 150 ~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
++. ..+...++||+|++..+++|++ ..++..+++++.+. |||.|++.+....
T Consensus 107 -----D~~-~~~~~~~~FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 107 -----DIL-KKDFPENTFDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred -----Ccc-cCCCCCCCeEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 121 2334567899999999998885 33444455544442 7999999987543
No 31
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.10 E-value=3.6e-10 Score=105.61 Aligned_cols=114 Identities=23% Similarity=0.369 Sum_probs=86.4
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
..+|..++|...+.+|.|+|||||..+-.+.+.||. ..++|+|.|++|++.|+..+-+.. +.. .++.. .
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~---f~~-----aDl~~-w 87 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDAT---FEE-----ADLRT-W 87 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCc---eec-----ccHhh-c
Confidence 346666778778899999999999999999999984 689999999999999987765532 211 12322 1
Q ss_pred CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
.+....||++++-+|++|++-.+ ++.+|+.. |||+|.+-=|++-.
T Consensus 88 -~p~~~~dllfaNAvlqWlpdH~~---ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 88 -KPEQPTDLLFANAVLQWLPDHPE---LLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred -CCCCccchhhhhhhhhhccccHH---HHHHHHHhhCCCceEEEECCCccC
Confidence 24567899999999999997655 45555554 89999987776643
No 32
>PRK08317 hypothetical protein; Provisional
Probab=99.09 E-value=2.1e-09 Score=102.76 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=81.7
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-CCCCceecchhHhhhhhccCCCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+....+.+|||+|||+|..+..++..++ ...+++++|.|+.+++.++...... .++.++.. +.. ..+....
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~~~~~~ 86 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVG-PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG-----DAD-GLPFPDG 86 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec-----ccc-cCCCCCC
Confidence 33334568999999999999988888763 2468999999999999998863221 12222211 111 1233457
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+||+|++.++++++++....+..+.++++ +||.|+++++.
T Consensus 87 ~~D~v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~ 126 (241)
T PRK08317 87 SFDAVRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLDTD 126 (241)
T ss_pred CceEEEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEecC
Confidence 89999999999999988877777777776 69999999974
No 33
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.08 E-value=6.2e-10 Score=103.47 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=80.5
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcc
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
+|...-.++||+|||.|.++..++. ...+++++|.|+..++.|++.+.+..++.++.. ++... .+.++|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~----rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~-----dvp~~--~P~~~F 107 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAP----RCDRLLAVDISPRALARARERLAGLPHVEWIQA-----DVPEF--WPEGRF 107 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGG----GEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES------TTT-----SS-E
T ss_pred cCccccceeEecCCCccHHHHHHHH----hhCceEEEeCCHHHHHHHHHhcCCCCCeEEEEC-----cCCCC--CCCCCe
Confidence 3433336999999999999998886 457999999999999999999987665544332 23221 356799
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec--------CCCCchHHH
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP--------GTPQGSSII 214 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp--------Gtp~Gf~~I 214 (462)
||||++-++.+|.+.++...++.++... |||.||+-.. |.+.|-+.|
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv 164 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETV 164 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHH
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHH
Confidence 9999999999998767777777877775 8999999753 456666665
No 34
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.08 E-value=2.9e-09 Score=102.11 Aligned_cols=111 Identities=20% Similarity=0.306 Sum_probs=81.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
++.+|||+|||+|..+..+....+ ...+++++|.|+.|++.+++.+.... ++.++.. +.. ..+...+.||
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~~D 123 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVG-KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQG-----DAE-ALPFPDNSFD 123 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEec-----ccc-cCCCCCCCcc
Confidence 457999999999999888877665 24689999999999999998875421 1222211 111 1223456899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
+|+++++|+++.+....+..+..+++ +||.++++|...+..
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~~~~~ 164 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRVLK-PGGRLVILEFSKPTN 164 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHhcc-CCcEEEEEEecCCCc
Confidence 99999999999887776666666665 699999999877644
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.08 E-value=1.1e-09 Score=109.39 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=72.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|..+..++. ...+|+++|.|+.|++.+++++.... ++.... .++.. .. ..++||+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~----~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~-----~D~~~-~~-~~~~fD~I 188 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLAL----LGFDVTAVDINQQSLENLQEIAEKENLNIRTGL-----YDINS-AS-IQEEYDFI 188 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHcCCceEEEE-----echhc-cc-ccCCccEE
Confidence 457999999999998888776 24589999999999999988775422 111111 12221 11 25689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
+++.+|+++. .+.+..+++++.+. +||++++++.
T Consensus 189 ~~~~vl~~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 189 LSTVVLMFLN-RERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred EEcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999995 55555666666553 7999888764
No 36
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.06 E-value=1.4e-09 Score=110.52 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=80.5
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+.+|||+|||+|..+..+.+..+ ..+|+++|.|++|++.|++.... .++.++.. +.. .++...+.||+|++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~--~~~VtgVD~S~~mL~~A~~k~~~-~~i~~i~g-----D~e-~lp~~~~sFDvVIs 184 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPL-KECKIIEG-----DAE-DLPFPTDYADRYVS 184 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhhhc-cCCeEEec-----cHH-hCCCCCCceeEEEE
Confidence 47999999999998887777654 25899999999999999886532 23333322 222 23445678999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+++|+++++....++.+.++++ +||.|+++++..+.
T Consensus 185 ~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~ 220 (340)
T PLN02490 185 AGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPT 220 (340)
T ss_pred cChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcc
Confidence 9999999988776666777765 69999999876554
No 37
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.06 E-value=3.6e-09 Score=106.72 Aligned_cols=102 Identities=21% Similarity=0.129 Sum_probs=69.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.+|||+|||+|..+..+... ..+|+++|+|+.|++.|++++.... ....+. ....++ +...++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~----g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~--f~~~Dl----~~l~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE----GAIVSASDISAAMVAEAERRAKEALAALPPEVLPK--FEANDL----ESLSGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcccccccccceE--EEEcch----hhcCCCc
Confidence 4679999999999988887762 3589999999999999998875421 000110 000112 1224689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+|++..+|+|+++ +....+++.+.+..+|.++|.-
T Consensus 214 D~Vv~~~vL~H~p~-~~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 214 DTVTCLDVLIHYPQ-DKADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred CEEEEcCEEEecCH-HHHHHHHHHHHhhcCCEEEEEe
Confidence 99999999999874 3444566766665555555543
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.03 E-value=5.6e-10 Score=93.45 Aligned_cols=93 Identities=23% Similarity=0.334 Sum_probs=64.3
Q ss_pred EEEECCchhHHHHHHHHhCCCC-ccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEEec
Q 012511 96 VLDFGAGTGSAFWALREVWPRS-LEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 96 VLDvG~G~G~~~~al~~~~~~~-~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVias 173 (462)
|||+|||+|..+.++.+.++.. ..++++||+|++|++.+++.....+ ...++.. ++. .++...++||+|+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~-----D~~-~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQA-----DAR-DLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEES-----CTT-CHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEEC-----CHh-HCcccCCCeeEEEEc
Confidence 7999999999999999887321 2799999999999999999875422 2222222 222 133346699999996
Q ss_pred cc-ccCCCCHHHHHHHHHHHHhc
Q 012511 174 YV-LGEVPSLQDRITIVRQLWDL 195 (462)
Q Consensus 174 ~v-L~el~~~~~r~~~i~~Lw~~ 195 (462)
+. ++++. +++...+++++.+.
T Consensus 75 ~~~~~~~~-~~~~~~ll~~~~~~ 96 (101)
T PF13649_consen 75 GLSLHHLS-PEELEALLRRIARL 96 (101)
T ss_dssp TTGGGGSS-HHHHHHHHHHHHHT
T ss_pred CCccCCCC-HHHHHHHHHHHHHH
Confidence 55 99985 88888888888775
No 39
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.03 E-value=7.1e-10 Score=106.61 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=71.4
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC----CCceecchhHhhhhhccCCCCCcccE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD----LPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~----~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++|||+|||+|..+..++. ....|+|||.|+.|++.|++.....+- +.+.-. ..........++||.
T Consensus 91 ~~ilDvGCGgGLLSepLAr----lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~-----~~~~~~E~~~~~fDa 161 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR----LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE-----YEDTDVEGLTGKFDA 161 (282)
T ss_pred ceEEEeccCccccchhhHh----hCCeeEeecccHHHHHHHHHhhhcCchhccccceeee-----hhhcchhhcccccce
Confidence 6799999999999988886 357999999999999999987332111 111100 111122233456999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
|||+-+|.|+.++.+.+.-+-++++ |+|.|+|-
T Consensus 162 VvcsevleHV~dp~~~l~~l~~~lk-P~G~lfit 194 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQEFLNCLSALLK-PNGRLFIT 194 (282)
T ss_pred eeeHHHHHHHhCHHHHHHHHHHHhC-CCCceEee
Confidence 9999999999988876555555554 79999984
No 40
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.03 E-value=5.5e-09 Score=99.14 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=80.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+..+....+. ..+++++|+|+.+++.++..+....++.++.. ++.. .+...++||+|+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~-----d~~~-~~~~~~~~D~i~ 111 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQA-----DAEA-LPFEDNSFDAVT 111 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEec-----chhc-CCCCCCcEEEEE
Confidence 5689999999999988888776652 35899999999999999887652122222221 2221 223456899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
++++++++++....++.+..+++ +||.+++++...+..
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~~ 149 (223)
T TIGR01934 112 IAFGLRNVTDIQKALREMYRVLK-PGGRLVILEFSKPAN 149 (223)
T ss_pred EeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEEecCCCc
Confidence 99999999877666666666664 799999999866544
No 41
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.02 E-value=1.5e-09 Score=107.01 Aligned_cols=131 Identities=16% Similarity=0.108 Sum_probs=78.3
Q ss_pred chhHHHHHH-HHHHHHHHCCCCCCCeEEEECCchhH----HHHHHHHhCCC---CccEEEEEeCCHHHHHHHHHhhcCC-
Q 012511 71 PAVYSACYR-VLCEVRRRLPGFSPAKVLDFGAGTGS----AFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQGP- 141 (462)
Q Consensus 71 p~~Ya~~~~-vL~eL~~rlp~~~p~rVLDvG~G~G~----~~~al~~~~~~---~~~~v~~VD~S~~ml~~Ak~ll~~~- 141 (462)
|..+..+.. ++.++..+.+...+.+|||+|||+|. .+..+.+.++. ...+|+|+|+|+.|++.|++..-..
T Consensus 77 ~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~ 156 (264)
T smart00138 77 SKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPER 156 (264)
T ss_pred cHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHH
Confidence 344444433 44555444333346899999999995 33345554432 1358999999999999998753110
Q ss_pred --CCCCc---------------e----e--cchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--C
Q 012511 142 --KDLPL---------------I----H--SYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--T 196 (462)
Q Consensus 142 --~~~~~---------------i----~--~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~ 196 (462)
.++|. + . ..+...++.. .+...++||+|+|.++|++++ ...+..+++++.+. +
T Consensus 157 ~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~-~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~p 234 (264)
T smart00138 157 ELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA-ESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKP 234 (264)
T ss_pred HHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC-CCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCC
Confidence 01110 0 0 0000112221 122367899999999999996 55555566555553 7
Q ss_pred CCEEEEE
Q 012511 197 RDVLVLV 203 (462)
Q Consensus 197 gG~LVlV 203 (462)
||+|+|-
T Consensus 235 GG~L~lg 241 (264)
T smart00138 235 GGYLFLG 241 (264)
T ss_pred CeEEEEE
Confidence 9999984
No 42
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.99 E-value=3.5e-09 Score=106.75 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=74.9
Q ss_pred HHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh---hcCCCCCCceecchhHhhhhhccC
Q 012511 85 RRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL---MQGPKDLPLIHSYNSIQALNKDIS 161 (462)
Q Consensus 85 ~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l---l~~~~~~~~i~~~~~~~~l~~~l~ 161 (462)
...+....+.+|||+|||+|..++.+.... ...|+|||+|+.|+..++.. +.......+... ++. .++
T Consensus 114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g---~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~-----~ie-~lp 184 (314)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHMWRMLGHG---AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL-----GIE-QLH 184 (314)
T ss_pred HHhcCCCCCCEEEEeccCCcHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC-----CHH-HCC
Confidence 333444567899999999999888877642 24799999999998765432 222112222211 121 133
Q ss_pred CCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 162 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
. ...||+|++..+|+|++++...+..+.++++ +||.|||-.
T Consensus 185 ~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvlet 225 (314)
T TIGR00452 185 E-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLET 225 (314)
T ss_pred C-CCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEE
Confidence 2 3479999999999999988887777777776 699999854
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.99 E-value=3.9e-09 Score=107.00 Aligned_cols=106 Identities=21% Similarity=0.238 Sum_probs=74.6
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC---CCCCCceecchhHhhhhhccCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPLIHSYNSIQALNKDISKS 163 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~---~~~~~~i~~~~~~~~l~~~l~~~ 163 (462)
.++...+.+|||+|||+|..++.++...+ ..|+++|+|+.|+..++..... ..++.++.. ++. .++.
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~---~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~-----d~e-~lp~- 186 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGA---KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPL-----GIE-QLPA- 186 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCC---CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeC-----CHH-HCCC-
Confidence 33445668999999999999998887533 3699999999998765443221 122322221 122 2343
Q ss_pred CCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 164 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 164 ~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
.++||+|++..+|+|+.++...+..+.+.++ +||.||+-
T Consensus 187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~ 225 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLE 225 (322)
T ss_pred cCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 5789999999999999888776676777765 69999874
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.97 E-value=9e-09 Score=98.62 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=69.5
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.++.+|||+|||+|..+..+++. ...|+++|+|+.|++.|++.+..... +.+.. .+ ++...++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~----~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~-----~d----~~~~~~~f 128 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR----GAKVVASDISPQMVEEARERAPEAGLAGNITFEV-----GD----LESLLGRF 128 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEE-----cC----chhccCCc
Confidence 34579999999999988877763 34699999999999999988754321 22211 11 22234689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcC-CCEEEEEec
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLT-RDVLVLVEP 205 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~-gG~LVlVEp 205 (462)
|+|++.++|++++ ......+++.+.+.. +|.++...+
T Consensus 129 D~v~~~~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 129 DTVVCLDVLIHYP-QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CEEEEcchhhcCC-HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 9999999999986 444556666666553 444444443
No 45
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.97 E-value=1.4e-08 Score=100.41 Aligned_cols=128 Identities=15% Similarity=0.242 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHH-HHHCCCCCCCeEEEECCchhHHHHHHHHhCCCC-ccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 72 AVYSACYRVLCEV-RRRLPGFSPAKVLDFGAGTGSAFWALREVWPRS-LEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 72 ~~Ya~~~~vL~eL-~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~-~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
+.|..+...+.++ ...++ ..+.+|||+|||+|..+..+.+..+.. ...++++|+|+.|++.|++... ++.++..
T Consensus 65 g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~---~~~~~~~ 140 (272)
T PRK11088 65 GHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP---QVTFCVA 140 (272)
T ss_pred CChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC---CCeEEEe
Confidence 4566665555333 33333 245789999999999888887766532 2379999999999999986542 2322221
Q ss_pred chhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 150 YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 150 ~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
+.. .++..+++||+|++.++... ...+.++++ +||.|+++.|+.. .+.++|+.+
T Consensus 141 -----d~~-~lp~~~~sfD~I~~~~~~~~-------~~e~~rvLk-pgG~li~~~p~~~----~l~el~~~~ 194 (272)
T PRK11088 141 -----SSH-RLPFADQSLDAIIRIYAPCK-------AEELARVVK-PGGIVITVTPGPR----HLFELKGLI 194 (272)
T ss_pred -----ecc-cCCCcCCceeEEEEecCCCC-------HHHHHhhcc-CCCEEEEEeCCCc----chHHHHHHh
Confidence 121 24556679999998765221 234555665 7999999998753 344556654
No 46
>PLN03075 nicotianamine synthase; Provisional
Probab=98.96 E-value=1e-08 Score=101.84 Aligned_cols=122 Identities=14% Similarity=0.188 Sum_probs=80.6
Q ss_pred chhHHHHHHHHHHHHHHCCCCCCCeEEEECCchh--HHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CC
Q 012511 71 PAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTG--SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DL 144 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G--~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~ 144 (462)
-.+|-.+.+.=-++...+..-.|.+|||+|||+| +.++.++..+++ .+++++|.+++|++.|++.++... .+
T Consensus 102 ~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~--~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV 179 (296)
T PLN03075 102 YNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPT--TSFHNFDIDPSANDVARRLVSSDPDLSKRM 179 (296)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHhhhccCccCCc
Confidence 3677766654434333333337899999999999 777777777763 589999999999999999985311 12
Q ss_pred CceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 145 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 145 ~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
.+.. .++.. .....+.||+|++. +|+++. .+...++++++.+. +||.|++
T Consensus 180 ~F~~-----~Da~~-~~~~l~~FDlVF~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 180 FFHT-----ADVMD-VTESLKEYDVVFLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred EEEE-----Cchhh-cccccCCcCEEEEe-cccccc-cccHHHHHHHHHHhcCCCcEEEE
Confidence 2222 12222 11124689999999 999883 23334455555543 7999987
No 47
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.96 E-value=5.1e-09 Score=98.00 Aligned_cols=112 Identities=23% Similarity=0.264 Sum_probs=76.6
Q ss_pred HHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 83 EVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 83 eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
++...++..++.++||+|||.|..+..++. ...+|+++|.|+..++.++.+++.. +++ +.. ...++.. ..
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~----~G~~VtAvD~s~~al~~l~~~a~~~-~l~-i~~--~~~Dl~~-~~- 90 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLAS----QGFDVTAVDISPVALEKLQRLAEEE-GLD-IRT--RVADLND-FD- 90 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHH----TT-EEEEEESSHHHHHHHHHHHHHT-T-T-EEE--EE-BGCC-BS-
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHhhc-Cce-eEE--EEecchh-cc-
Confidence 334444556789999999999998888887 4678999999999999888877542 233 211 1123332 11
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
....||+|+++.++++|. .+.+..++.+|-+. +||+++++..
T Consensus 91 ~~~~yD~I~st~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 91 FPEEYDFIVSTVVFMFLQ-RELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -TTTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCcCEEEEEEEeccCC-HHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 236899999999999996 66677777777654 7999888653
No 48
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.95 E-value=6.6e-09 Score=102.63 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=76.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..++...+ ...+++++|+|+.|++.|++...... ++.++. .++. .++...+.||+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g-~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~-----~d~~-~l~~~~~~fD~ 149 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVG-PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL-----GEIE-ALPVADNSVDV 149 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE-----cchh-hCCCCCCceeE
Confidence 357999999999987766665544 23589999999999999998765432 222221 1222 23444568999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
|+++.+++++++....+..+.++++ +||.|++.+..
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~ 185 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVV 185 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEee
Confidence 9999999999877666666666665 79999998753
No 49
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.95 E-value=8.2e-09 Score=110.03 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=78.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+|||+|||+|..+..++..++ .+++++|+|+.|++.|+....... .+.+.. .++. ..+.+.++||+|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~-----~d~~-~~~~~~~~fD~I 336 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFD---VHVVGIDLSVNMISFALERAIGRKCSVEFEV-----ADCT-KKTYPDNSFDVI 336 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhhcCCCceEEEE-----cCcc-cCCCCCCCEEEE
Confidence 457999999999988877776543 489999999999999987664322 122221 1222 123345689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
++..++.|++++...+..+.++++ |||.|+|.+...
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~ 372 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYCR 372 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEecc
Confidence 999999999988776777777775 799999988654
No 50
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.93 E-value=3.3e-09 Score=100.81 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhh
Q 012511 59 DDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 138 (462)
Q Consensus 59 ~~e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll 138 (462)
+.++..|+.+| +.|- ...+..+..+... ...++|+|||+|-++..+++.+ ++|+++|.|++|+++|++..
T Consensus 6 ~~~a~~Y~~AR--P~YP--tdw~~~ia~~~~~--h~~a~DvG~G~Gqa~~~iae~~----k~VIatD~s~~mL~~a~k~~ 75 (261)
T KOG3010|consen 6 DKQAADYLNAR--PSYP--TDWFKKIASRTEG--HRLAWDVGTGNGQAARGIAEHY----KEVIATDVSEAMLKVAKKHP 75 (261)
T ss_pred cccHHHHhhcC--CCCc--HHHHHHHHhhCCC--cceEEEeccCCCcchHHHHHhh----hhheeecCCHHHHHHhhcCC
Confidence 44677888877 4554 4567777776543 2489999999998888888864 57999999999999998755
Q ss_pred cCCC-CCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 139 QGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 139 ~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
.... +.|..-.. .++ ..+...+++.|||+|+-++|++. .+.....+.++++++||.+.+
T Consensus 76 ~~~y~~t~~~ms~---~~~-v~L~g~e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 76 PVTYCHTPSTMSS---DEM-VDLLGGEESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred CcccccCCccccc---ccc-ccccCCCcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEE
Confidence 4321 11110000 001 11223478999999999999995 777788899999988877665
No 51
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.93 E-value=6.5e-09 Score=99.46 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=76.0
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
++|||+|||+|..+..+++.++ ..+++++|+|+.|++.++..+...+ .+.++. .++.. .+. .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~-----~d~~~-~~~-~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP--HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFY-----RDSAK-DPF-PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEe-----ccccc-CCC-CCCCCEe
Confidence 3799999999998888877664 2589999999999999998875432 112221 12211 122 3589999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
++..+++++++....+..+.++++ |||.+++.+..
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLK-DGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcc
Confidence 999999999877666666777765 79999998864
No 52
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.92 E-value=9.2e-09 Score=96.31 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
+.+|||+|||+|..+.+++..++ ..+|+++|.|+.|++.|++.++... ++.++.. +... ++. .++||+|
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~--~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~-----d~~~-~~~-~~~fDlV 116 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP--ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG-----RAEE-FGQ-EEKFDVV 116 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC--CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec-----cHhh-CCC-CCCccEE
Confidence 58999999999998888777665 4689999999999999998876543 2222221 1221 233 5689999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
++.. +.+.......+.++++ +||.+++++..
T Consensus 117 ~~~~----~~~~~~~l~~~~~~Lk-pGG~lv~~~~~ 147 (187)
T PRK00107 117 TSRA----VASLSDLVELCLPLLK-PGGRFLALKGR 147 (187)
T ss_pred EEcc----ccCHHHHHHHHHHhcC-CCeEEEEEeCC
Confidence 9875 2334454555555554 79999999754
No 53
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.92 E-value=1.9e-08 Score=96.20 Aligned_cols=91 Identities=26% Similarity=0.291 Sum_probs=64.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.++.+|||+|||+|..+..++.. ..+++++|+|++|++.|++.+.... ++.+... ++.. + .++|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~----~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~-----d~~~-~---~~~f 120 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR----GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVN-----DLLS-L---CGEF 120 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-----Chhh-C---CCCc
Confidence 45689999999999988877762 3589999999999999998775422 2222211 1211 1 2689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL 195 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~ 195 (462)
|+|++++++.+++ ......++.++.+.
T Consensus 121 D~ii~~~~l~~~~-~~~~~~~l~~i~~~ 147 (219)
T TIGR02021 121 DIVVCMDVLIHYP-ASDMAKALGHLASL 147 (219)
T ss_pred CEEEEhhHHHhCC-HHHHHHHHHHHHHH
Confidence 9999999999986 44455566666554
No 54
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.89 E-value=1e-08 Score=109.22 Aligned_cols=106 Identities=16% Similarity=0.266 Sum_probs=73.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhh-hccCCCCCcccE
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDISKSEREHDL 169 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~-~~l~~~~~~fDL 169 (462)
....+|||+|||+|..+..+++. ..++++||.|+.|++.++.......++.++.. ++. ..++....+||+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~----~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~-----d~~~~~~~~~~~~fD~ 106 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK----AGQVIALDFIESVIKKNESINGHYKNVKFMCA-----DVTSPDLNISDGSVDL 106 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHhccCCceEEEEe-----cccccccCCCCCCEEE
Confidence 34579999999999999888874 34899999999999988764433233333322 121 123345578999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
|+++++|+++++ .+...+++++.+. +||.|++.|..
T Consensus 107 I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 107 IFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred EehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999999999974 3444444444432 79999998854
No 55
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.86 E-value=3e-08 Score=92.35 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=67.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..++...+ ..+|++||.|+.|++.+++.++... ++.++.. +... +. ..++||+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~--~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~-----d~~~-~~-~~~~fD~ 112 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP--ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG-----RAED-FQ-HEEQFDV 112 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC--CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec-----chhh-cc-ccCCccE
Confidence 468999999999988777766554 3579999999999999988765432 2333322 1221 22 2468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|++.. +++ .....+.+.++++ +||.+++..
T Consensus 113 I~s~~-~~~---~~~~~~~~~~~Lk-pgG~lvi~~ 142 (181)
T TIGR00138 113 ITSRA-LAS---LNVLLELTLNLLK-VGGYFLAYK 142 (181)
T ss_pred EEehh-hhC---HHHHHHHHHHhcC-CCCEEEEEc
Confidence 98865 433 3344455566665 799998774
No 56
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.85 E-value=4.9e-08 Score=94.03 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=76.3
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCccc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
..+..+|||+|||+|..+..+... ..+++++|+|+.+++.++..+.... .+.++.. +.........++||
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~fD 116 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL----GADVTGIDASEENIEVARLHALESGLKIDYRQT-----TAEELAAEHPGQFD 116 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc----CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEec-----CHHHhhhhcCCCcc
Confidence 345689999999999988777652 3579999999999999987664322 1112111 11111112346899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+|+++++++++++....+..+.++++ +||.+++..++
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~ 153 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLN 153 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecC
Confidence 99999999999988777777777775 69999987764
No 57
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.84 E-value=1.7e-08 Score=96.74 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=83.8
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCC----CccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCC
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPR----SLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~----~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
....+|||++||||..+..+.+..+. ...+|+++|+|++|++.|++.....+ ..+.+ .++..-...+|+++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~---~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRV---EWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCce---EEEeCCcccCCCCC
Confidence 34589999999999988877766442 24799999999999999998875422 11111 11111233577888
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.+||+.++++.+...++.+..+...-++++ |||.+.++|...
T Consensus 176 ~s~D~yTiafGIRN~th~~k~l~EAYRVLK-pGGrf~cLeFsk 217 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTHIQKALREAYRVLK-PGGRFSCLEFSK 217 (296)
T ss_pred CcceeEEEecceecCCCHHHHHHHHHHhcC-CCcEEEEEEccc
Confidence 999999999999999988876666666665 799999999754
No 58
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.83 E-value=5.9e-08 Score=89.86 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=70.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
++.+|||+|||+|..+..++... .+++++|.|+.|++.++..+.... +..++.. ++.. ...++||+|
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~~---~~~~~fD~V 86 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG----KCILTTDINPFAVKELRENAKLNNVGLDVVMT-----DLFK---GVRGKFDVI 86 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC----CEEEEEECCHHHHHHHHHHHHHcCCceEEEEc-----cccc---ccCCcccEE
Confidence 45789999999999988888642 289999999999999998775432 1111111 1111 123589999
Q ss_pred EecccccCCCCHH---------------------HHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 171 IASYVLGEVPSLQ---------------------DRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 171 ias~vL~el~~~~---------------------~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+++..+++.+... ..+..+.++++ +||.++++.++...
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~~~ 145 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSLNG 145 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEeccCC
Confidence 9998877665321 11223334443 79999999976653
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.83 E-value=4.3e-08 Score=84.06 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=66.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+|||+|||+|..++.++..++. .+|+++|.|+.|++.++..++... +..++.. +....++....+||+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~D~ 91 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEG-----DAPEALEDSLPEPDR 91 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEec-----cccccChhhcCCCCE
Confidence 3469999999999999998887763 689999999999999988775432 2211111 111111222358999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|++......+ .+.+..+.++++ +||.|++
T Consensus 92 v~~~~~~~~~---~~~l~~~~~~Lk-~gG~li~ 120 (124)
T TIGR02469 92 VFIGGSGGLL---QEILEAIWRRLR-PGGRIVL 120 (124)
T ss_pred EEECCcchhH---HHHHHHHHHHcC-CCCEEEE
Confidence 9997654332 233444444444 6999887
No 60
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.82 E-value=6.6e-08 Score=92.32 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=75.6
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.++.+|||+|||+|..+..+... ..+++++|.|+.|++.++..+.... ++.+... +..........+||
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~D 114 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL----GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCT-----SVEDLAEKGAKSFD 114 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC-----CHHHhhcCCCCCcc
Confidence 35689999999999988777653 3469999999999999988765422 1222211 11111111236899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
+|+++++++++.+....+..+.++++ +||.+++....
T Consensus 115 ~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~~~ 151 (224)
T TIGR01983 115 VVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFSTIN 151 (224)
T ss_pred EEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEecC
Confidence 99999999999988877777777765 69998887654
No 61
>PRK06922 hypothetical protein; Provisional
Probab=98.82 E-value=3.6e-08 Score=106.61 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=74.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccC--CCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDIS--KSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~--~~~~~fD 168 (462)
++.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+..+.... +..++.. +.. .++ ..+++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~g-----Da~-dLp~~fedeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKG-----DAI-NLSSSFEKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEc-----chH-hCccccCCCCEE
Confidence 458999999999998888877665 4699999999999999987654321 1112221 111 122 3456899
Q ss_pred EEEecccccCCCC----------HHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 169 LVIASYVLGEVPS----------LQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~----------~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
+|++++++|++.+ ......+++++.+. +||.++|+|.-
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9999999987631 23444555555543 79999999863
No 62
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.80 E-value=7.5e-08 Score=99.92 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=78.8
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
.+..+.+.++...+.+|||+|||+|..+..+++..+ .+|+++|+|++|++.|++.+.+.. +.+.. .+.. .
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g---~~V~giDlS~~~l~~A~~~~~~l~-v~~~~-----~D~~-~ 224 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG---VSVVGVTISAEQQKLAQERCAGLP-VEIRL-----QDYR-D 224 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhccCe-EEEEE-----Cchh-h
Confidence 444455555444557999999999998887776543 489999999999999998875421 11111 1121 1
Q ss_pred cCCCCCcccEEEecccccCCCCH--HHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 160 ISKSEREHDLVIASYVLGEVPSL--QDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~--~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+ .++||+|++..+++++... ...+..+.++++ |||.+++...+.+
T Consensus 225 l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~i~~~ 271 (383)
T PRK11705 225 L---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLK-PDGLFLLHTIGSN 271 (383)
T ss_pred c---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 1 3689999999999998532 334455556664 7999999876544
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.80 E-value=6.4e-08 Score=91.67 Aligned_cols=121 Identities=9% Similarity=0.038 Sum_probs=76.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+|||+|||+|..+..++..++ ..+|++||+|+.|++.|++.+.... ++.++.... ...+... ....+||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p--~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~-~~~l~~~--~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP--DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDA-VEVLLDM--FPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC--CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCH-HHHHHHH--cCccccce
Confidence 457999999999999998887765 3579999999999999998775432 222332211 0112111 23568999
Q ss_pred EEecccccCCCC--------HHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 170 VIASYVLGEVPS--------LQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 170 Vias~vL~el~~--------~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
|++.+...+... ....+..+.++++ +||.|+|+.+ ....+..+.+.+.
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~----~~~~~~~~~~~~~ 170 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATD----WEGYAEYMLEVLS 170 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcC----CHHHHHHHHHHHH
Confidence 998876533221 1223344444444 7999999654 3455555555543
No 64
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.79 E-value=4.6e-08 Score=93.50 Aligned_cols=113 Identities=17% Similarity=0.027 Sum_probs=71.5
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--------------CCCC
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--------------KDLP 145 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--------------~~~~ 145 (462)
.|.++..+++...+.+|||+|||.|..+..+++ ...+|++||+|+.+++.+.....-. .++.
T Consensus 22 ~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~----~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 22 LLVKHWPALGLPAGARVFVPLCGKSLDLAWLAE----QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred HHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHh----CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 343443343222346999999999988877776 4668999999999999753311100 0111
Q ss_pred ceecchhHhhhhhccCC-CCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEE
Q 012511 146 LIHSYNSIQALNKDISK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 203 (462)
Q Consensus 146 ~i~~~~~~~~l~~~l~~-~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlV 203 (462)
++ ..++.. ++. ..++||+|+...++++++ ++.|..++.++.+. |||.++++
T Consensus 98 ~~-----~~D~~~-~~~~~~~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 98 IF-----CGDFFA-LTAADLGPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EE-----EccCCC-CCcccCCCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 11 112211 111 135799999999999996 77777666666554 79986665
No 65
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.76 E-value=1.2e-07 Score=95.43 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=72.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
+..+|||+|||+|..+.++.+.+|. .+++++|. +.|++.+++.+...+-...+... ..++.. .+ ...+|+|+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~--~~d~~~-~~--~~~~D~v~ 220 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNL-PGAIDLVNENAAEKGVADRMRGI--AVDIYK-ES--YPEADAVL 220 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCC--CEEEEEec-HHHHHHHHHHHHhCCccceEEEE--ecCccC-CC--CCCCCEEE
Confidence 3479999999999999998888873 58999997 78999998876643211111110 011111 11 12479999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEec
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
++++||... .+....+++++.+. |||.|+|+|.
T Consensus 221 ~~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 221 FCRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred eEhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999999885 45545566666553 7999999986
No 66
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.76 E-value=8.7e-08 Score=89.95 Aligned_cols=103 Identities=20% Similarity=0.279 Sum_probs=68.5
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
|.++...++ .+.+|||+|||+|..+.++.+.. ...++++|+|++|++.++.. ++.++... +...+
T Consensus 4 ~~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~---~~~~~giD~s~~~i~~a~~~-----~~~~~~~d-----~~~~l 68 (194)
T TIGR02081 4 LESILNLIP--PGSRVLDLGCGDGELLALLRDEK---QVRGYGIEIDQDGVLACVAR-----GVNVIQGD-----LDEGL 68 (194)
T ss_pred HHHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc---CCcEEEEeCCHHHHHHHHHc-----CCeEEEEE-----hhhcc
Confidence 344554443 34699999999999887776532 24679999999999988641 22233221 22112
Q ss_pred -CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 161 -SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 161 -~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+...++||+|+++++|+++++... +++++.+. ++.+++
T Consensus 69 ~~~~~~sfD~Vi~~~~l~~~~d~~~---~l~e~~r~-~~~~ii 107 (194)
T TIGR02081 69 EAFPDKSFDYVILSQTLQATRNPEE---ILDEMLRV-GRHAIV 107 (194)
T ss_pred cccCCCCcCEEEEhhHhHcCcCHHH---HHHHHHHh-CCeEEE
Confidence 234578999999999999987554 56666664 555544
No 67
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.75 E-value=8.3e-08 Score=91.06 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=68.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
...+|||+|||+|..+..+++..+ ...+|+++|.+++|++.|++.+..... +.++.. +....++ ...+||
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~-~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~-----d~~~~~~-~~~~fD 144 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIE-RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG-----DGKRGLE-KHAPFD 144 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC-----CcccCCc-cCCCcc
Confidence 347999999999998877777654 235899999999999999987764321 222221 2222222 346899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+|+++.++.+++. ++++ .++ +||.|++.-
T Consensus 145 ~Ii~~~~~~~~~~-----~l~~-~L~-~gG~lvi~~ 173 (205)
T PRK13944 145 AIIVTAAASTIPS-----ALVR-QLK-DGGVLVIPV 173 (205)
T ss_pred EEEEccCcchhhH-----HHHH-hcC-cCcEEEEEE
Confidence 9999999888862 2333 343 799998854
No 68
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.73 E-value=1.7e-07 Score=92.36 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=83.6
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
.++.+.+.+...++++|||||||-|..+..+++.++ .+|++|+.|+++.+.+++.++..+-...++.. .+++.
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~---v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~--l~d~r-- 132 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG---VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR--LQDYR-- 132 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC---CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE--ecccc--
Confidence 445555555555678999999999988887777653 58999999999999999977654321111110 12222
Q ss_pred cCCCCCcccEEEecccccCCCC--HHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 160 ISKSEREHDLVIASYVLGEVPS--LQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~--~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
...++||-||+--++.|+.. ...-...+.++++ +||.+++-.-+.+..
T Consensus 133 --d~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~~~~ 182 (283)
T COG2230 133 --DFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITGPDQ 182 (283)
T ss_pred --ccccccceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecCCCc
Confidence 23345999999999999974 3344455566654 699999988777663
No 69
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.71 E-value=1.9e-07 Score=86.02 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=72.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC--CCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~--~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+|||+|||+|..+..++...+ ..+++++|.|+.+++.++..++...- +..+. .++...+ ...+||+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~--~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~-----~d~~~~~--~~~~fD~ 101 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP--DAKVTAVDINPDALELAKRNAERNGLENVEVVQ-----SDLFEAL--PDGKFDL 101 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST--CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEE-----SSTTTTC--CTTCEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCC--CCEEEEEcCCHHHHHHHHHHHHhcCcccccccc-----ccccccc--cccceeE
Confidence 347999999999999999888765 34699999999999999988765331 11221 1222222 3579999
Q ss_pred EEecccccCCCC-H-HHHHHHHHHHHhc--CCCEEEEEecCCCCchHHH
Q 012511 170 VIASYVLGEVPS-L-QDRITIVRQLWDL--TRDVLVLVEPGTPQGSSII 214 (462)
Q Consensus 170 Vias~vL~el~~-~-~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I 214 (462)
|+++--++.-.. . .-...++.+..+. +||.|++|-. +..+++.+
T Consensus 102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~-~~~~~~~~ 149 (170)
T PF05175_consen 102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN-SHLGYERL 149 (170)
T ss_dssp EEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE-TTSCHHHH
T ss_pred EEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee-cCCChHHH
Confidence 999876655532 1 1223344443332 7999987765 45566555
No 70
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.69 E-value=2.9e-07 Score=85.84 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=67.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..++...+ ..+++++|.|+.|++.|++.+.... ++.++.. +... + ...+||+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~-----d~~~--~-~~~~~D~ 100 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFP--SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG-----EAPI--E-LPGKADA 100 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec-----Cchh--h-cCcCCCE
Confidence 457999999999999988887664 3689999999999999988765432 2222211 1111 1 2357999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+++.....+ ......+.++++ +||.+++...
T Consensus 101 v~~~~~~~~~---~~~l~~~~~~Lk-~gG~lv~~~~ 132 (187)
T PRK08287 101 IFIGGSGGNL---TAIIDWSLAHLH-PGGRLVLTFI 132 (187)
T ss_pred EEECCCccCH---HHHHHHHHHhcC-CCeEEEEEEe
Confidence 9998765443 233334444444 7999988654
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.69 E-value=2.3e-07 Score=88.54 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=68.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..++...+ ...+|+++|.+++|++.|++.++... ++.++.. +..... ....+||+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~-~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g-----d~~~~~-~~~~~fD~ 148 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVG-KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG-----DGTLGY-EENAPYDR 148 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC-----CcccCC-CcCCCcCE
Confidence 457999999999998877777654 24689999999999999999886532 2222221 111111 23468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+++..+.+++. .+.+ .++ +||.||+..
T Consensus 149 I~~~~~~~~~~~-----~l~~-~Lk-pgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGPDIPK-----PLIE-QLK-DGGIMVIPV 176 (212)
T ss_pred EEECCCcccchH-----HHHH-hhC-CCcEEEEEE
Confidence 999988777641 2333 343 799998865
No 72
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.68 E-value=2.2e-07 Score=92.87 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=65.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
++.+|||+|||+|..+.+++. .+ ..+++++|.|+.|++.|++.+....-...+... ..+. .....++||+|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~-~g--~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~--~~~~---~~~~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK-LG--AAKVVGIDIDPLAVESARKNAELNQVSDRLQVK--LIYL---EQPIEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH-cC--CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEE--eccc---ccccCCCceEEE
Confidence 458999999999988877765 33 358999999999999999887643211111110 0011 122356899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
++.+...+ ...+..+.++++ +||+|++....
T Consensus 231 an~~~~~l---~~ll~~~~~~Lk-pgG~li~sgi~ 261 (288)
T TIGR00406 231 ANILAEVI---KELYPQFSRLVK-PGGWLILSGIL 261 (288)
T ss_pred EecCHHHH---HHHHHHHHHHcC-CCcEEEEEeCc
Confidence 97654332 122334445554 79999997654
No 73
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.68 E-value=2.4e-07 Score=88.47 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++..+ ...+|++||.+++|++.|++.++... ++.++.. +..... ....+||+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~-~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~-----d~~~~~-~~~~~fD~ 149 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVG-RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG-----DGTQGW-EPLAPYDR 149 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC-----CcccCC-cccCCCCE
Confidence 457999999999999988887654 23579999999999999998886543 2222221 121111 23458999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|++.....+++. .+.+.++ +||.||+.-
T Consensus 150 Ii~~~~~~~~~~------~~~~~L~-~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPKIPE------ALIDQLK-EGGILVMPV 177 (215)
T ss_pred EEEcCCcccccH------HHHHhcC-cCcEEEEEE
Confidence 999988777651 2333444 799998853
No 74
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.67 E-value=3.6e-07 Score=93.39 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=74.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
..+|||+|||+|..+..+....+ ..+++++|.|+.|++.|+..++... +... .. ..+. +....++||+||+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p--~~~v~~vDis~~Al~~A~~nl~~n~-l~~~-~~--~~D~---~~~~~~~fDlIvs 267 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP--KIRLTLSDVSAAALESSRATLAANG-LEGE-VF--ASNV---FSDIKGRFDMIIS 267 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcC-CCCE-EE--Eccc---ccccCCCccEEEE
Confidence 46899999999999888887665 3579999999999999998776532 2110 00 0111 1123468999999
Q ss_pred cccccCCCC--HHHHHHHHHHHHhc--CCCEEEEEecCCCCchHHH
Q 012511 173 SYVLGEVPS--LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSII 214 (462)
Q Consensus 173 s~vL~el~~--~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I 214 (462)
+..+|.... ......++++..+. +||.|+||-.. ...|+.+
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~-~l~y~~~ 312 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA-FLPYPDL 312 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC-CCChHHH
Confidence 988876422 23334455554443 79999998764 4556544
No 75
>PRK04266 fibrillarin; Provisional
Probab=98.66 E-value=3.5e-07 Score=88.22 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=64.4
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc--cCCCCC
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD--ISKSER 165 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~--l~~~~~ 165 (462)
++-.+..+|||+|||+|..+..+++..+ ..+|+++|.|++|++.+.+.++...++..+... .... ......
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~--~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D-----~~~~~~~~~l~~ 140 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE--EGVVYAVEFAPRPMRELLEVAEERKNIIPILAD-----ARKPERYAHVVE 140 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECC-----CCCcchhhhccc
Confidence 3333457999999999999888888664 358999999999999776665543444333221 1100 001124
Q ss_pred cccEEEecccccCCCCHHHH---HHHHHHHHhcCCCEEEE
Q 012511 166 EHDLVIASYVLGEVPSLQDR---ITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r---~~~i~~Lw~~~gG~LVl 202 (462)
+||+|++. ++++... +..+.++++ +||.|+|
T Consensus 141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LK-pGG~lvI 174 (226)
T PRK04266 141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLK-DGGYLLL 174 (226)
T ss_pred cCCEEEEC-----CCChhHHHHHHHHHHHhcC-CCcEEEE
Confidence 69999853 3333322 344555554 7999999
No 76
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.65 E-value=6.6e-07 Score=87.52 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhH
Q 012511 74 YSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSI 153 (462)
Q Consensus 74 Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~ 153 (462)
.......+..+.... ..+.+|||+|||+|..+.++... + ..+++++|+|+.|++.|++++....-...+.
T Consensus 103 h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~-g--~~~v~giDis~~~l~~A~~n~~~~~~~~~~~----- 172 (250)
T PRK00517 103 HPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKL-G--AKKVLAVDIDPQAVEAARENAELNGVELNVY----- 172 (250)
T ss_pred CHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHcCCCceEE-----
Confidence 333444455554432 24589999999999888777653 2 2369999999999999998775432101110
Q ss_pred hhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 154 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 154 ~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
+.....+||+|+++...+.+ ......+.++++ +||.||+...
T Consensus 173 ------~~~~~~~fD~Vvani~~~~~---~~l~~~~~~~Lk-pgG~lilsgi 214 (250)
T PRK00517 173 ------LPQGDLKADVIVANILANPL---LELAPDLARLLK-PGGRLILSGI 214 (250)
T ss_pred ------EccCCCCcCEEEEcCcHHHH---HHHHHHHHHhcC-CCcEEEEEEC
Confidence 11122279999987532221 122223333443 7999999654
No 77
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.64 E-value=3e-07 Score=91.00 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHH---HHhhcCCCCCCceecchhHhhhhhccCCCC
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAG---QSLMQGPKDLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~A---k~ll~~~~~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
+++.++++|||||||.|..+|.+... ....|+|+|++....-.. +..+........+. ..+. .++. .
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~---GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp--lgvE----~Lp~-~ 180 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGR---GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP--LGVE----DLPN-L 180 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhc---CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC--cchh----hccc-c
Confidence 34667899999999999999987763 346899999999765443 33332111111110 0111 2344 5
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+.||+|+|--||-|..++-..+..+++.++ +||.|||
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvL 217 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVL 217 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEE
Confidence 789999999999999999888888888776 5999987
No 78
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.63 E-value=9.1e-08 Score=89.89 Aligned_cols=133 Identities=24% Similarity=0.261 Sum_probs=81.7
Q ss_pred cccCHHHHHHHHHhcCchhHHH--HHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHH
Q 012511 55 LKYRDDETIAYVASRMPAVYSA--CYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQR 132 (462)
Q Consensus 55 ~~y~~~e~~AYla~r~p~~Ya~--~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~ 132 (462)
+-|++.+|.-|..+.--..+.+ ..+.|.-| .+|+..+.-|||||||+|...-.+.+ ....+++||+|+.|++
T Consensus 13 lfYnd~eA~kYt~nsri~~IQ~em~eRaLELL--alp~~~~~~iLDIGCGsGLSg~vL~~----~Gh~wiGvDiSpsML~ 86 (270)
T KOG1541|consen 13 LFYNDTEAPKYTQNSRIVLIQAEMAERALELL--ALPGPKSGLILDIGCGSGLSGSVLSD----SGHQWIGVDISPSMLE 86 (270)
T ss_pred eeechhhhhhccccceeeeehHHHHHHHHHHh--hCCCCCCcEEEEeccCCCcchheecc----CCceEEeecCCHHHHH
Confidence 4566666666654322222221 12333332 24555778999999999976644443 5678999999999999
Q ss_pred HHHH-hhcCCCCCCceecchhHhhhhhccCCCCCcccEEEecccccCCCC-------HHHHH-HHHHHHHhc--CCCEEE
Q 012511 133 AGQS-LMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPS-------LQDRI-TIVRQLWDL--TRDVLV 201 (462)
Q Consensus 133 ~Ak~-ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~-------~~~r~-~~i~~Lw~~--~gG~LV 201 (462)
.|.+ .++ ++ ++ ..++...+|+.+++||-||+-..+.+|-+ +..|+ .++..|... .|+..|
T Consensus 87 ~a~~~e~e--gd--li-----l~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV 157 (270)
T KOG1541|consen 87 QAVERELE--GD--LI-----LCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAV 157 (270)
T ss_pred HHHHhhhh--cC--ee-----eeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeE
Confidence 9985 222 12 12 23466678888999999998777776643 33443 344445443 355555
Q ss_pred E
Q 012511 202 L 202 (462)
Q Consensus 202 l 202 (462)
+
T Consensus 158 ~ 158 (270)
T KOG1541|consen 158 L 158 (270)
T ss_pred E
Confidence 5
No 79
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.63 E-value=2.4e-07 Score=86.17 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=75.8
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC-CCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~-~~~~~fDLVi 171 (462)
..+|||+|||.|..+-.+.+. ...+..|||++++.+..+.. + .++.++. ++...+. +++++||.||
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~---k~v~g~GvEid~~~v~~cv~--r---Gv~Viq~-----Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE---KQVDGYGVEIDPDNVAACVA--R---GVSVIQG-----DLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh---cCCeEEEEecCHHHHHHHHH--c---CCCEEEC-----CHHHhHhhCCCCCccEEe
Confidence 479999999999988877774 35688999999998766543 2 2445543 3444453 6788999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
.+.+|.++..++. ++++|++- |...|+ +-..|... +.|-.++
T Consensus 81 lsqtLQ~~~~P~~---vL~EmlRV-gr~~IV----sFPNFg~W-~~R~~l~ 122 (193)
T PF07021_consen 81 LSQTLQAVRRPDE---VLEEMLRV-GRRAIV----SFPNFGHW-RNRLQLL 122 (193)
T ss_pred hHhHHHhHhHHHH---HHHHHHHh-cCeEEE----EecChHHH-HHHHHHH
Confidence 9999999986665 67788875 555555 22234433 3455555
No 80
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.63 E-value=2.6e-07 Score=92.85 Aligned_cols=112 Identities=10% Similarity=0.207 Sum_probs=72.0
Q ss_pred HHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-CCCCc--eecchhHhhhhh
Q 012511 82 CEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPL--IHSYNSIQALNK 158 (462)
Q Consensus 82 ~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-~~~~~--i~~~~~~~~l~~ 158 (462)
.+|...++ .+.+|||+|||+|..+..+.+.++. ..+|++||+|++|++.+++.+... +.+.. +.. ++..
T Consensus 55 ~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g-----D~~~ 126 (301)
T TIGR03438 55 DEIAAATG--AGCELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICA-----DFTQ 126 (301)
T ss_pred HHHHHhhC--CCCeEEecCCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE-----cccc
Confidence 34444443 3478999999999999888876642 468999999999999998776542 22221 221 2221
Q ss_pred c--cCCC--CCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 159 D--ISKS--EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 159 ~--l~~~--~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
. ++.. .....+++++.++++++ +++...+++++.+. +||.|+|
T Consensus 127 ~~~~~~~~~~~~~~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 127 PLALPPEPAAGRRLGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred hhhhhcccccCCeEEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 1111 11233555667888886 76666777776654 7888876
No 81
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.62 E-value=5.6e-07 Score=84.82 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=72.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
...+|||+|||+|..+..++..++ ...+++++|.|+.|++.+++.++..+ ++.++.. +....++.....||
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~-~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~-----d~~~~l~~~~~~~D 113 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVG-ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG-----EAPEILFTINEKFD 113 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe-----chhhhHhhcCCCCC
Confidence 457999999999999888776554 24589999999999999998776433 2222221 11111222235799
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
+|++.... ......+..+.++++ +||.+|+ +.- -++.+.++.+.+
T Consensus 114 ~V~~~~~~---~~~~~~l~~~~~~Lk-pgG~lv~-~~~---~~~~~~~~~~~l 158 (198)
T PRK00377 114 RIFIGGGS---EKLKEIISASWEIIK-KGGRIVI-DAI---LLETVNNALSAL 158 (198)
T ss_pred EEEECCCc---ccHHHHHHHHHHHcC-CCcEEEE-Eee---cHHHHHHHHHHH
Confidence 99986422 223344444445554 7999986 332 334455555554
No 82
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.62 E-value=2.9e-07 Score=95.02 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=70.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-C-CCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-D-LPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~-~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+|||+|||+|.....++...| ..+|++||.|+.|++.|+..++... . ...+... ..+....+ ...+||+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P--~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~--~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP--QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGV--EPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccC--CCCCEEEE
Confidence 46999999999999988888766 3589999999999999998775322 1 1111110 11111111 23589999
Q ss_pred EecccccCC--CCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchH
Q 012511 171 IASYVLGEV--PSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 171 ias~vL~el--~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~ 212 (462)
+++--+|.. .+......++....+. +||.|+||-. ...+|.
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n-r~l~y~ 347 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN-RHLDYF 347 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe-cCcCHH
Confidence 997554432 1233334455444432 7999998842 334443
No 83
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.59 E-value=8.3e-07 Score=84.59 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=74.7
Q ss_pred HHHHHHHCCC-CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchh----Hhh
Q 012511 81 LCEVRRRLPG-FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS----IQA 155 (462)
Q Consensus 81 L~eL~~rlp~-~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~----~~~ 155 (462)
|.++..+... .++.+|||+|||||..+..+++..+. ...|++||+++ |. ...++.+++.... .+.
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~-~~~V~aVDi~~-~~--------~~~~v~~i~~D~~~~~~~~~ 108 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGD-KGRVIACDILP-MD--------PIVGVDFLQGDFRDELVLKA 108 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCC-CceEEEEeccc-cc--------CCCCcEEEecCCCChHHHHH
Confidence 3344444432 23569999999999988888877652 45899999998 32 1122322222100 011
Q ss_pred hhhccCCCCCcccEEEecccccCCCCH-----------HHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 156 LNKDISKSEREHDLVIASYVLGEVPSL-----------QDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 156 l~~~l~~~~~~fDLVias~vL~el~~~-----------~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
+... ...++||+|+++.+.+...+. ...+..+.++++ +||.|++.......=-+.+.++|..+.
T Consensus 109 i~~~--~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~~~~~~~~l~~l~~~f~ 183 (209)
T PRK11188 109 LLER--VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQGEGFDEYLREIRSLFT 183 (209)
T ss_pred HHHH--hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEecCcCHHHHHHHHHhCce
Confidence 1111 235689999998776655332 122344444444 799999977655443455666665544
No 84
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.58 E-value=6.4e-08 Score=91.41 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=69.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC-CCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~-~~~~~fDLVi 171 (462)
-.+|||+|||||...-++.+ ...++++||+|+.|+++|.+. +..+ .+.+ .++...++ ....+||||+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~----~a~~ltGvDiS~nMl~kA~eK--g~YD-~L~~-----Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRD----MADRLTGVDISENMLAKAHEK--GLYD-TLYV-----AEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred cceeeecccCcCcccHhHHH----HHhhccCCchhHHHHHHHHhc--cchH-HHHH-----HHHHHHhhhccCCcccchh
Confidence 37999999999988777776 345799999999999998752 2111 0111 11111122 2457899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+.-||.++.+.+.....+..+++ +||.|.+
T Consensus 194 AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaF 223 (287)
T COG4976 194 AADVLPYLGALEGLFAGAAGLLA-PGGLFAF 223 (287)
T ss_pred hhhHHHhhcchhhHHHHHHHhcC-CCceEEE
Confidence 99999999888887777778876 6898877
No 85
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.58 E-value=4.3e-07 Score=90.02 Aligned_cols=120 Identities=15% Similarity=0.105 Sum_probs=73.9
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 159 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~ 159 (462)
-+..+..++....+.+|||+|||-|..+..+++.++ .+|++|..|++..+.+++.+++.+....+... ..++.+
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g---~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~--~~D~~~- 123 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG---CHVTGITLSEEQAEYARERIREAGLEDRVEVR--LQDYRD- 123 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEE--ES-GGG-
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC---cEEEEEECCHHHHHHHHHHHHhcCCCCceEEE--Eeeccc-
Confidence 444555555444568999999999988888777653 58999999999999999988765422222111 122321
Q ss_pred cCCCCCcccEEEecccccCCCC--HHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 012511 160 ISKSEREHDLVIASYVLGEVPS--LQDRITIVRQLWDLTRDVLVLVEPGTPQ 209 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~--~~~r~~~i~~Lw~~~gG~LVlVEpGtp~ 209 (462)
+ ..+||-||+--++.|+.. ...-...+.++++ |||.+++-....+.
T Consensus 124 ~---~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 124 L---PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVLQTITHRD 171 (273)
T ss_dssp ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEEEEEEE--
T ss_pred c---CCCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEEEeccccc
Confidence 2 339999999999999952 2344555666664 79999875544443
No 86
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.55 E-value=5.7e-07 Score=86.26 Aligned_cols=102 Identities=21% Similarity=-0.003 Sum_probs=65.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC------------CCceecchhHhhhhhcc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD------------LPLIHSYNSIQALNKDI 160 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~------------~~~i~~~~~~~~l~~~l 160 (462)
..+|||+|||.|..+..+++ ...+|++||+|+.+++.+.... +... ...+. ....++....
T Consensus 38 ~~rvL~~gCG~G~da~~LA~----~G~~V~avD~s~~Ai~~~~~~~-~l~~~~~~~~~~~~~~~~~v~--~~~~D~~~l~ 110 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE----QGHEVLGVELSELAVEQFFAEN-GLTPQTRQSGEFEHYQAGEIT--IYCGDFFALT 110 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh----CCCeEEEEccCHHHHHHHHHHc-CCCccccccccccccccCceE--EEECcccCCC
Confidence 46999999999988877776 4568999999999999764211 0000 00010 0011221111
Q ss_pred CCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
+.....||+|+..-++++++ ++.|..++..+.+. |||.+++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 111 AADLADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cccCCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 11235899999999999996 77777766666554 7886554
No 87
>PRK14967 putative methyltransferase; Provisional
Probab=98.55 E-value=1.9e-06 Score=82.80 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=49.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
..+|||+|||+|..+..++.. + ..+++++|.|+.|++.++..+.... +..++.. ++...+ ...+||+|+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~-----d~~~~~--~~~~fD~Vi 106 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-G--AGSVTAVDISRRAVRSARLNALLAGVDVDVRRG-----DWARAV--EFRPFDVVV 106 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC-----chhhhc--cCCCeeEEE
Confidence 469999999999988777653 2 3489999999999999988775432 1212211 222112 346899999
Q ss_pred ec
Q 012511 172 AS 173 (462)
Q Consensus 172 as 173 (462)
++
T Consensus 107 ~n 108 (223)
T PRK14967 107 SN 108 (223)
T ss_pred EC
Confidence 86
No 88
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=6.4e-07 Score=89.02 Aligned_cols=99 Identities=22% Similarity=0.281 Sum_probs=65.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCc-eecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL-IHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~-i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
++.+|||+|||+|.++.|++.. ...+++++|+.+-.++.|+++++... ++. ++. . ....... ...++||+|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL---GA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~--~-~~~~~~~-~~~~~~DvI 233 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL---GAKKVVGVDIDPQAVEAARENARLNG-VELLVQA--K-GFLLLEV-PENGPFDVI 233 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc---CCceEEEecCCHHHHHHHHHHHHHcC-Cchhhhc--c-cccchhh-cccCcccEE
Confidence 6789999999999999998873 34689999999999999999876432 221 110 0 0010001 134699999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|++- |-+. ......-+..+++ |||+||+
T Consensus 234 VANI-LA~v--l~~La~~~~~~lk-pgg~lIl 261 (300)
T COG2264 234 VANI-LAEV--LVELAPDIKRLLK-PGGRLIL 261 (300)
T ss_pred Eehh-hHHH--HHHHHHHHHHHcC-CCceEEE
Confidence 9886 3322 1122334455554 6999998
No 89
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.51 E-value=8.1e-07 Score=86.13 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=73.8
Q ss_pred CCCC-CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcc
Q 012511 89 PGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 89 p~~~-p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+|+ ..+|||||+|.|..+.++...+|. .++++.|. ++.++.++. ...+.++.. ++-..+| . +
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dl-p~v~~~~~~----~~rv~~~~g-----d~f~~~P---~-~ 159 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPN--LRATVFDL-PEVIEQAKE----ADRVEFVPG-----DFFDPLP---V-A 159 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTT--SEEEEEE--HHHHCCHHH----TTTEEEEES------TTTCCS---S-E
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCC--Ccceeecc-Hhhhhcccc----ccccccccc-----cHHhhhc---c-c
Confidence 3454 468999999999999999999984 48999998 888888877 223333332 2222232 2 9
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CC--CEEEEEecC
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TR--DVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~g--G~LVlVEpG 206 (462)
|+|+.+++||..+ +++...+++++.+. || |.|+|+|.-
T Consensus 160 D~~~l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 160 DVYLLRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cceeeehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9999999999997 77778888888775 67 999999974
No 90
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.49 E-value=1.3e-06 Score=82.06 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=69.7
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+|||+|||+|..+.+++..+|+ ..+++||+|..|++.|+..+... .++.++... ...+.... ...+.+|.|
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d--~~~~~~~~-~~~~~~d~v 91 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGD--ANELLDKF-FPDGSLSKV 91 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccC--HHHHHHhh-CCCCceeEE
Confidence 469999999999999988887763 58999999999999998776542 233333221 11111111 234589999
Q ss_pred EecccccCCCCH--------HHHHHHHHHHHhcCCCEEEEEec
Q 012511 171 IASYVLGEVPSL--------QDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 171 ias~vL~el~~~--------~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
++++...+.... ...+..+.++++ +||.|++.-.
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lk-pgG~l~~~td 133 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLK-KGGVIHFKTD 133 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhC-CCCEEEEEeC
Confidence 988754433211 233445555554 6999988653
No 91
>PRK04457 spermidine synthase; Provisional
Probab=98.48 E-value=1.3e-06 Score=86.13 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=68.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|.+|||+|||+|+.+..++..+| ..++++||+++++++.|++.+.... ++.++.. +....+.....+||
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~-----Da~~~l~~~~~~yD 138 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP--DTRQTAVEINPQVIAVARNHFELPENGERFEVIEA-----DGAEYIAVHRHSTD 138 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC-----CHHHHHHhCCCCCC
Confidence 468999999999999988888776 3589999999999999998775322 2222221 11111222245899
Q ss_pred EEEecccc-cCCCC---HHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 169 LVIASYVL-GEVPS---LQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 169 LVias~vL-~el~~---~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
+|++...- ...+. ..+-.+.+.++++ +||.|++--.+.
T Consensus 139 ~I~~D~~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvin~~~~ 180 (262)
T PRK04457 139 VILVDGFDGEGIIDALCTQPFFDDCRNALS-SDGIFVVNLWSR 180 (262)
T ss_pred EEEEeCCCCCCCccccCcHHHHHHHHHhcC-CCcEEEEEcCCC
Confidence 99975311 12211 1233444445554 799998843333
No 92
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.46 E-value=1.4e-06 Score=70.40 Aligned_cols=100 Identities=22% Similarity=0.286 Sum_probs=64.5
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+|||+|||+|..+..+.. . ...+++++|.++.+++.+++..... ....++.. +..........+||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G--PGARVTGVDISPVALELARKAAAALLADNVEVLKG-----DAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEc-----ChhhhccccCCceEEEEE
Confidence 589999999998887776 2 3569999999999999888433221 12222221 111111113468999999
Q ss_pred cccccCC-CCHHHHHHHHHHHHhcCCCEEEEE
Q 012511 173 SYVLGEV-PSLQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 173 s~vL~el-~~~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
..+++++ ......+..+..+++ ++|.+++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 9999884 333343444444443 68988875
No 93
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.46 E-value=8.3e-07 Score=75.68 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=65.5
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+|||+|||+|+.+.++.+.. ..+++++|+++..++.|+..+..... ..++... ..++.. ....++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~---~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D--~~~~~~--~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG---AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGD--ARDLPE--PLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC---TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESH--HHHHHH--TCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC---CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECc--hhhchh--hccCceeEEE
Confidence 589999999999999988865 36899999999999999988765421 1222211 112221 1346789999
Q ss_pred EecccccCCCCHH-----HHHHHHHHHHhc--CCCEEEEEec
Q 012511 171 IASYVLGEVPSLQ-----DRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 171 ias~vL~el~~~~-----~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
+++--........ .-..+++++.+. +||.++++-+
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9975554321111 112344444443 6999988754
No 94
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.46 E-value=9.2e-07 Score=88.40 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchh
Q 012511 73 VYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS 152 (462)
Q Consensus 73 ~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~ 152 (462)
+...+.-.|..|.+.. .++.+|||+|||+|.++.+++.. + ..+|+++|+++.+++.|++++...+-...+...
T Consensus 144 ~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~kl-G--A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-- 216 (295)
T PF06325_consen 144 HHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKL-G--AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-- 216 (295)
T ss_dssp HCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHT-T--BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--
T ss_pred CCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHc-C--CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--
Confidence 3444444555555442 34579999999999999988874 3 468999999999999999987543211112110
Q ss_pred HhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 153 IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 153 ~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
.. ......+||||+++-..+-|- .....+.++++ +||+||+
T Consensus 217 ---~~--~~~~~~~~dlvvANI~~~vL~---~l~~~~~~~l~-~~G~lIl 257 (295)
T PF06325_consen 217 ---LS--EDLVEGKFDLVVANILADVLL---ELAPDIASLLK-PGGYLIL 257 (295)
T ss_dssp ---CT--SCTCCS-EEEEEEES-HHHHH---HHHHHCHHHEE-EEEEEEE
T ss_pred ---Ee--cccccccCCEEEECCCHHHHH---HHHHHHHHhhC-CCCEEEE
Confidence 11 112347999999886544331 11223344443 6899998
No 95
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.46 E-value=1.6e-06 Score=82.38 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..++... .+++++|.+++|++.+++.+.... ++.++.. +....++ ..++||+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~-~~~~fD~ 147 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV----RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG-----DGWKGWP-AYAPFDR 147 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh----CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC-----CcccCCC-cCCCcCE
Confidence 45799999999998776666542 379999999999999998876532 2222221 1111122 2468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|++...+.+++. .+..+++ +||.|++.-.
T Consensus 148 I~~~~~~~~~~~------~l~~~L~-~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPEIPR------ALLEQLK-EGGILVAPVG 176 (212)
T ss_pred EEEccCchhhhH------HHHHhcC-CCcEEEEEEc
Confidence 999988777641 2334444 6999988654
No 96
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=1e-06 Score=84.04 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh---ccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK---DISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~---~l~~~~~~fD 168 (462)
.+.+||++|||.|..+|-+.+.-++....+.++|.|+.+++..++...-. ....+.. +-+++. .-+...++.|
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~--e~~~~af--v~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD--ESRVEAF--VWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc--hhhhccc--ceeccchhccCCCCcCccc
Confidence 44589999999999999998887766689999999999999888654321 1111111 112211 1123568999
Q ss_pred EEEecccccCCCCHHHH---HHHHHHHHhcCCCEEEEEecCC
Q 012511 169 LVIASYVLGEVPSLQDR---ITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 169 LVias~vL~el~~~~~r---~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
+|++-++|..++ ++.- +..+..|++ |||.|++-+-|.
T Consensus 147 ~it~IFvLSAi~-pek~~~a~~nl~~llK-PGG~llfrDYg~ 186 (264)
T KOG2361|consen 147 IITLIFVLSAIH-PEKMQSVIKNLRTLLK-PGGSLLFRDYGR 186 (264)
T ss_pred eEEEEEEEeccC-hHHHHHHHHHHHHHhC-CCcEEEEeeccc
Confidence 999999999997 5443 445555555 899999977654
No 97
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.41 E-value=3.8e-06 Score=81.43 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=52.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+..+.... ++.++.. ++... ....+||+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----d~~~~--~~~~~fD~ 157 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP--DARVTAVDISPEALAVARKNAARLGLDNVTFLQS-----DWFEP--LPGGKFDL 157 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC-----chhcc--CcCCceeE
Confidence 346999999999999999998775 3589999999999999998875432 2222221 22111 23568999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
|+++
T Consensus 158 Vi~n 161 (251)
T TIGR03534 158 IVSN 161 (251)
T ss_pred EEEC
Confidence 9985
No 98
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.40 E-value=2.5e-06 Score=79.69 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=30.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHH
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSM 130 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~m 130 (462)
++.+|||+|||||..+.++...+. ...+++++|+|+.|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~-~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVG-GKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhC-CCceEEEEeccccc
Confidence 357999999999998887777653 23579999999865
No 99
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.39 E-value=3.6e-06 Score=82.95 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=52.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc-CC-CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ-GP-KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~-~~-~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+.+++..++ ..+++++|+|+.|++.|+..+. .. .++.++.. ++...+ ...+||+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~--~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~-----d~~~~~--~~~~fD~ 178 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP--DAEVTAVDISPEALAVARRNAKHGLGARVEFLQG-----DWFEPL--PGGRFDL 178 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEc-----cccCcC--CCCceeE
Confidence 457999999999999988888765 3589999999999999998876 21 12222221 121111 2468999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
||++
T Consensus 179 Iv~n 182 (275)
T PRK09328 179 IVSN 182 (275)
T ss_pred EEEC
Confidence 9985
No 100
>PRK00811 spermidine synthase; Provisional
Probab=98.38 E-value=4.2e-06 Score=83.47 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=67.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.|.+||++|||.|..+..+.... ...+|++||+++.|++.|++.+.... ..+.+... ..+....+....++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~--~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~--~~Da~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP--SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV--IGDGIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC--CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE--ECchHHHHhhCCCcc
Confidence 47899999999999888777632 35689999999999999998775321 11222110 111111122235689
Q ss_pred cEEEecccccCCCCH----HHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 168 DLVIASYVLGEVPSL----QDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 168 DLVias~vL~el~~~----~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
|+||+...-...+.. .+-.+.++++++ +||.+|+ -.+++
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~-~~~~~ 194 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVA-QSGSP 194 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEE-eCCCc
Confidence 999986433222211 233345556664 6998876 34444
No 101
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.37 E-value=2.8e-06 Score=77.93 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=51.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
...+|||+|||+|..+..+++. ..+++++|.++.|++.+++.+....++.+++.. ... ++.....||+|+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~----~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D-----~~~-~~~~~~~~d~vi 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER----AARVTAIEIDPRLAPRLREKFAAADNLTVIHGD-----ALK-FDLPKLQPYKVV 82 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc----CCeEEEEECCHHHHHHHHHHhccCCCEEEEECc-----hhc-CCccccCCCEEE
Confidence 3469999999999999888763 358999999999999999887653334333321 211 222334689988
Q ss_pred eccc
Q 012511 172 ASYV 175 (462)
Q Consensus 172 as~v 175 (462)
++--
T Consensus 83 ~n~P 86 (169)
T smart00650 83 GNLP 86 (169)
T ss_pred ECCC
Confidence 7643
No 102
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.37 E-value=2.1e-06 Score=80.94 Aligned_cols=130 Identities=19% Similarity=0.162 Sum_probs=69.6
Q ss_pred chhHHHHHH-HHHHHHHHCCCCCCCeEEEECCchhHH----HHHHHHhCCC---CccEEEEEeCCHHHHHHHHHhh-c--
Q 012511 71 PAVYSACYR-VLCEVRRRLPGFSPAKVLDFGAGTGSA----FWALREVWPR---SLEKVNLVEPSQSMQRAGQSLM-Q-- 139 (462)
Q Consensus 71 p~~Ya~~~~-vL~eL~~rlp~~~p~rVLDvG~G~G~~----~~al~~~~~~---~~~~v~~VD~S~~ml~~Ak~ll-~-- 139 (462)
|..+..+.. ++.++..+.....+.+|+-+||++|.- +..+.+..+. ...+++++|+|+.+++.|+.-. .
T Consensus 9 ~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~ 88 (196)
T PF01739_consen 9 PEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPER 88 (196)
T ss_dssp TTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGG
T ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHH
Confidence 445555544 332444333333678999999999943 3334443222 2469999999999999998643 1
Q ss_pred CCCCCCc------e-ec---c------------hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--
Q 012511 140 GPKDLPL------I-HS---Y------------NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-- 195 (462)
Q Consensus 140 ~~~~~~~------i-~~---~------------~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~-- 195 (462)
...++|. . .. . +...++.. .+...+.||+|+|-|||.++. .+.+..+++.+.+.
T Consensus 89 ~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~L~ 166 (196)
T PF01739_consen 89 SLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRLHRSLK 166 (196)
T ss_dssp GGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEE
T ss_pred HHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHHHHHHcC
Confidence 1112210 0 00 0 00112222 123467899999999999995 88888899988886
Q ss_pred CCCEEEE
Q 012511 196 TRDVLVL 202 (462)
Q Consensus 196 ~gG~LVl 202 (462)
+||+|+|
T Consensus 167 pgG~L~l 173 (196)
T PF01739_consen 167 PGGYLFL 173 (196)
T ss_dssp EEEEEEE
T ss_pred CCCEEEE
Confidence 7999998
No 103
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.35 E-value=1.9e-06 Score=82.14 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=73.9
Q ss_pred chhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCcee
Q 012511 71 PAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIH 148 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~ 148 (462)
|..++.+...|. -.+..+|||+|||+|..+-.++...+ ....|++||..+.+.+.|++.+.... ++.+++
T Consensus 58 P~~~a~~l~~L~-------l~pg~~VLeIGtGsGY~aAlla~lvg-~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALD-------LKPGDRVLEIGTGSGYQAALLAHLVG-PVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTT-------C-TT-EEEEES-TTSHHHHHHHHHHS-TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHh-------cCCCCEEEEecCCCcHHHHHHHHhcC-ccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 455555554443 11347999999999988877777665 35689999999999999999987532 333333
Q ss_pred cchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 149 SYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 149 ~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
. +.....+ ...+||.|+++..+.++|. .++++| ++||.||+.-.
T Consensus 130 g-----dg~~g~~-~~apfD~I~v~~a~~~ip~-----~l~~qL--~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 G-----DGSEGWP-EEAPFDRIIVTAAVPEIPE-----ALLEQL--KPGGRLVAPIG 173 (209)
T ss_dssp S------GGGTTG-GG-SEEEEEESSBBSS--H-----HHHHTE--EEEEEEEEEES
T ss_pred c-----chhhccc-cCCCcCEEEEeeccchHHH-----HHHHhc--CCCcEEEEEEc
Confidence 2 1222222 3468999999999988862 255555 36999998554
No 104
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.35 E-value=1.4e-05 Score=75.06 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=67.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
...+|||+|||+|..+..++...+ ..+++++|.|+.|++.+++.++... ++.++... ....++.....+|.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~--~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d-----~~~~~~~~~~~~d~ 112 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCP--KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS-----APECLAQLAPAPDR 112 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc-----hHHHHhhCCCCCCE
Confidence 347999999999998877766543 3689999999999999998775432 22222211 11111111224566
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHH
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSH 220 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~ 220 (462)
|+... .......+..+.++++ +||.+++..+. ++.+..+.+.
T Consensus 113 v~~~~----~~~~~~~l~~~~~~Lk-pgG~li~~~~~----~~~~~~~~~~ 154 (196)
T PRK07402 113 VCIEG----GRPIKEILQAVWQYLK-PGGRLVATASS----LEGLYAISEG 154 (196)
T ss_pred EEEEC----CcCHHHHHHHHHHhcC-CCeEEEEEeec----HHHHHHHHHH
Confidence 65432 1122333444444443 79999987653 4444445554
No 105
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.32 E-value=4.9e-06 Score=84.33 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=66.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..+++..+. ...|++||.+++|++.|++.++..+ ++.++.. +..... ....+||+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~-~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g-----D~~~~~-~~~~~fD~ 152 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGE-KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG-----DGYYGV-PEFAPYDV 152 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC-----Chhhcc-cccCCccE
Confidence 3479999999999988887776542 3469999999999999998776432 2222221 222112 22357999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|+++..+.+++. .+++ .++ +||.+++..
T Consensus 153 Ii~~~g~~~ip~-----~~~~-~Lk-pgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVDEVPE-----TWFT-QLK-EGGRVIVPI 180 (322)
T ss_pred EEECCchHHhHH-----HHHH-hcC-CCCEEEEEe
Confidence 999987776642 1233 333 699988754
No 106
>PRK14968 putative methyltransferase; Provisional
Probab=98.29 E-value=1.3e-05 Score=74.00 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=65.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--C--CCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D--LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~--~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
++.+|||+|||+|..+..++.. ..+++++|.|+.|++.+++.+.... + +.++.. ++...+ ...+|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-----d~~~~~--~~~~~ 91 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN----GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRS-----DLFEPF--RGDKF 91 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh----cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEec-----cccccc--cccCc
Confidence 4578999999999988887764 3589999999999999988765322 1 222221 122122 23479
Q ss_pred cEEEecccccCCCC------------------HHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 168 DLVIASYVLGEVPS------------------LQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 168 DLVias~vL~el~~------------------~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
|+|+++..+..-.. ......+++++++. ++|.++++.+.
T Consensus 92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 99998765433111 11122344444443 79988887653
No 107
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.29 E-value=1.3e-05 Score=83.27 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=51.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
..+|||+|||+|..+.+++...+ ..+++++|.|+.|++.|+++++... ++.++.. ++.........+||+||
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p--~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~g-----Dl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERP--DAFVRASDISPPALETARKNAADLGARVEFAHG-----SWFDTDMPSEGKWDIIV 324 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEc-----chhccccccCCCccEEE
Confidence 35999999999999888876554 3589999999999999999876533 2222222 22111101235799999
Q ss_pred ecc
Q 012511 172 ASY 174 (462)
Q Consensus 172 as~ 174 (462)
++-
T Consensus 325 SNP 327 (423)
T PRK14966 325 SNP 327 (423)
T ss_pred ECC
Confidence 953
No 108
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.1e-05 Score=80.40 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=54.3
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEec-
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS- 173 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias- 173 (462)
+|||+|||+|..+.+++...+. .+|+++|+|+.+++.|+.++...+-.. +.... .++ +....++||+||++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~--~dl---f~~~~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVR-VLVVQ--SDL---FEPLRGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEe--eec---ccccCCceeEEEeCC
Confidence 8999999999999999987763 689999999999999999887643111 11110 122 22234589999996
Q ss_pred -ccccC
Q 012511 174 -YVLGE 178 (462)
Q Consensus 174 -~vL~e 178 (462)
|+-.+
T Consensus 185 PYip~~ 190 (280)
T COG2890 185 PYIPAE 190 (280)
T ss_pred CCCCCc
Confidence 55444
No 109
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.28 E-value=8.5e-06 Score=79.08 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=68.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC-CCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~-~~~~~fDLVi 171 (462)
..+|||+|||.|.+.++++...+ ..++++||+.++|.+.|++.++.......+... ..++..... ....+||+||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~--~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~--~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTE--KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI--EADIKEFLKALVFASFDLII 120 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCC--CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEe--hhhHHHhhhcccccccCEEE
Confidence 58999999999999999888654 278999999999999999887653322222110 112222111 2334799999
Q ss_pred ecccccCCCCH------------------HHHHHHHHHHHhcCCCEEEEEec
Q 012511 172 ASYVLGEVPSL------------------QDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 172 as~vL~el~~~------------------~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+==....... ++.+.....+++ ++|.|.+|-+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r 171 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHR 171 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEec
Confidence 97433322211 122233334443 7999999876
No 110
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.5e-06 Score=78.81 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=72.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+||+||||+|..+-.+++.- .+|+.||..++..+.|++.++..+ |+..++. |-....+ ...+||.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~----~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g-----DG~~G~~-~~aPyD~ 141 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLV----GRVVSIERIEELAEQARRNLETLGYENVTVRHG-----DGSKGWP-EEAPYDR 141 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHh----CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC-----CcccCCC-CCCCcCE
Confidence 45899999999998777777653 489999999999999999887654 3333332 2222232 4579999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+++-...++|. .++++| ++||.||+..-
T Consensus 142 I~Vtaaa~~vP~-----~Ll~QL--~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPEVPE-----ALLDQL--KPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCCCCH-----HHHHhc--ccCCEEEEEEc
Confidence 999999999983 366676 47999999876
No 111
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.27 E-value=1.1e-05 Score=79.98 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|.+||++|||+|..+..+.... ...++++||+++.+++.+++.+..... .+.+... ..+....+....++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~--~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~--~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK--SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ--IDDGFKFLADTENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC--CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE--ECchHHHHHhCCCCcc
Confidence 46799999999999887776532 256899999999999999987643211 1111100 0111111112246899
Q ss_pred EEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEE
Q 012511 169 LVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 169 LVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+||+...-..-+. ..+..+.+.++++ +||.+++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEc
Confidence 9998655222111 1233445566665 69999886
No 112
>PTZ00146 fibrillarin; Provisional
Probab=98.27 E-value=8.3e-06 Score=81.07 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=63.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
+..+|||+|||||+.+..+++..+. ...|++||+|+.|++.....+....++..+...... ..........+|+|+
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~-~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~---p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGP-EGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARY---PQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCC-CCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccC---hhhhhcccCCCCEEE
Confidence 3469999999999999999987753 358999999997654333333322344333221100 000111234799999
Q ss_pred ecccccCCCCHHHH-HHHHHHHHhcCCCEEEEEec
Q 012511 172 ASYVLGEVPSLQDR-ITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 172 as~vL~el~~~~~r-~~~i~~Lw~~~gG~LVlVEp 205 (462)
+... .++.... ...+..+++ ++|.|+|..+
T Consensus 208 ~Dva---~pdq~~il~~na~r~LK-pGG~~vI~ik 238 (293)
T PTZ00146 208 ADVA---QPDQARIVALNAQYFLK-NGGHFIISIK 238 (293)
T ss_pred EeCC---CcchHHHHHHHHHHhcc-CCCEEEEEEe
Confidence 8874 2333222 224555665 6999999543
No 113
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.26 E-value=1.1e-05 Score=80.48 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=52.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+|||+|..+.+++..++ ..+++++|+|+.|++.|+..++... ++.++.. ++...+ ...+||
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~--~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~-----D~~~~~--~~~~fD 191 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP--EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS-----DLFAAL--PGRKYD 191 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----chhhcc--CCCCcc
Confidence 357999999999999999888765 3589999999999999998876432 1222222 222222 234799
Q ss_pred EEEec
Q 012511 169 LVIAS 173 (462)
Q Consensus 169 LVias 173 (462)
+||++
T Consensus 192 ~Iv~N 196 (284)
T TIGR03533 192 LIVSN 196 (284)
T ss_pred EEEEC
Confidence 99986
No 114
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.25 E-value=3.1e-06 Score=77.13 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=60.6
Q ss_pred EEEeCCHHHHHHHHHhhcCC-----CCCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcC
Q 012511 122 NLVEPSQSMQRAGQSLMQGP-----KDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT 196 (462)
Q Consensus 122 ~~VD~S~~ml~~Ak~ll~~~-----~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~ 196 (462)
+|+|+|++|++.|++..+.. .++.++.. +.. .++...++||+|+++++|+++++....+.-+.++++ |
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~-----d~~-~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-p 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEG-----DAI-DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-P 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEe-----chh-hCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-c
Confidence 58999999999998665421 12233322 222 356667799999999999999887776777777775 7
Q ss_pred CCEEEEEecCCCCc
Q 012511 197 RDVLVLVEPGTPQG 210 (462)
Q Consensus 197 gG~LVlVEpGtp~G 210 (462)
||.|+|+|.+.+..
T Consensus 74 GG~l~i~d~~~~~~ 87 (160)
T PLN02232 74 GSRVSILDFNKSNQ 87 (160)
T ss_pred CeEEEEEECCCCCh
Confidence 99999999987664
No 115
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.25 E-value=2.2e-05 Score=76.89 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC-CCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK-SEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~-~~~~fDLVi 171 (462)
+.+|||+|||+|..+.+++...+ ..+++++|.|+.|++.|++.+.... ..++.. ++...++. ..++||+||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~--~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~-----D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD--GIELHAADIDPAAVRCARRNLADAG-GTVHEG-----DLYDALPTALRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcC-CEEEEe-----echhhcchhcCCCEeEEE
Confidence 45899999999999998887665 3589999999999999998876432 222221 12111211 135799999
Q ss_pred ec
Q 012511 172 AS 173 (462)
Q Consensus 172 as 173 (462)
++
T Consensus 159 ~N 160 (251)
T TIGR03704 159 AN 160 (251)
T ss_pred EC
Confidence 86
No 116
>PRK01581 speE spermidine synthase; Validated
Probab=98.23 E-value=1.3e-05 Score=81.82 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=63.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh--hc---CCC-CCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL--MQ---GPK-DLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l--l~---~~~-~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.|.+||++|||+|.++..+.+. + ...++++||++++|++.|+.. +. ... +.+.+... ..+....+.....
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv--i~Da~~fL~~~~~ 225 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-E-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH--VCDAKEFLSSPSS 225 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-C-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE--ECcHHHHHHhcCC
Confidence 5789999999999877777663 3 367999999999999999962 11 100 11222110 1111111222356
Q ss_pred cccEEEeccccc------CCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 166 EHDLVIASYVLG------EVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 166 ~fDLVias~vL~------el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+||+||+...-. .+. ..+-...+.+.++ +||++|+-.
T Consensus 226 ~YDVIIvDl~DP~~~~~~~Ly-T~EFy~~~~~~Lk-PgGV~V~Qs 268 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLY-TSELFARIATFLT-EDGAFVCQS 268 (374)
T ss_pred CccEEEEcCCCccccchhhhh-HHHHHHHHHHhcC-CCcEEEEec
Confidence 899999874211 111 1223344555554 799988763
No 117
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.22 E-value=1.3e-05 Score=80.87 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=52.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+|||+|||+|..+.+++..++ ..+++++|+|+.|++.|+..++..+ ++.++.. ++...+ ...+||+
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p--~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~-----D~~~~l--~~~~fDl 204 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFP--DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES-----DLFAAL--PGRRYDL 204 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC-----chhhhC--CCCCccE
Confidence 36899999999999998888765 3689999999999999999876432 1222222 222222 2357999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
||++
T Consensus 205 IvsN 208 (307)
T PRK11805 205 IVSN 208 (307)
T ss_pred EEEC
Confidence 9986
No 118
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.22 E-value=9.5e-06 Score=77.52 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=83.7
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC--ce--------------------
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP--LI-------------------- 147 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~--~i-------------------- 147 (462)
-|.|..+|||||-.|.++.+++..|+. ..+.|||+.+..+..|+..++...... ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~--r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGP--RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhcc--ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 467899999999999999999999974 469999999999999998876432110 00
Q ss_pred --------ecchhHh------hhhhccCCCCCcccEEEeccccc--CCC-CHHHHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 148 --------HSYNSIQ------ALNKDISKSEREHDLVIASYVLG--EVP-SLQDRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 148 --------~~~~~~~------~l~~~l~~~~~~fDLVias~vL~--el~-~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
..+...+ .-++.+......||+|+|-.+-. ||. .++-...+++.+|++ |||+||+ .|
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv----EP 209 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV----EP 209 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE----cC
Confidence 0000000 00001112456899998855433 333 355667788888886 8999987 66
Q ss_pred CchHHHHHHHHHH
Q 012511 209 QGSSIISQMRSHI 221 (462)
Q Consensus 209 ~Gf~~I~~aR~~l 221 (462)
.+|..-..++..+
T Consensus 210 QpWksY~kaar~~ 222 (288)
T KOG2899|consen 210 QPWKSYKKAARRS 222 (288)
T ss_pred CchHHHHHHHHHH
Confidence 7777666655554
No 119
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.20 E-value=2.8e-05 Score=77.52 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=51.3
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+|||+|||+|..+.+++..++ ..+++++|.|+.+++.|+..++.... +.++.. ++...+ ...+||+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~--~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~-----d~~~~~--~~~~fDlI 186 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP--NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS-----NLFEPL--AGQKIDII 186 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----chhccC--cCCCccEE
Confidence 6999999999999999888765 35899999999999999998764321 222221 222122 22379999
Q ss_pred Eec
Q 012511 171 IAS 173 (462)
Q Consensus 171 ias 173 (462)
|++
T Consensus 187 vsN 189 (284)
T TIGR00536 187 VSN 189 (284)
T ss_pred EEC
Confidence 986
No 120
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=2.9e-05 Score=77.04 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=73.7
Q ss_pred HCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCC
Q 012511 87 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
.++.....+|||+|||.|.....+++..| ..+++.+|.|...++.|+..+.... +...... ++- ....
T Consensus 153 ~l~~~~~~~vlDlGCG~Gvlg~~la~~~p--~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s-----~~~---~~v~ 222 (300)
T COG2813 153 TLPPDLGGKVLDLGCGYGVLGLVLAKKSP--QAKLTLVDVNARAVESARKNLAANGVENTEVWAS-----NLY---EPVE 222 (300)
T ss_pred hCCccCCCcEEEeCCCccHHHHHHHHhCC--CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe-----ccc---cccc
Confidence 44443345999999999999888888776 4689999999999999999886432 1111111 121 1123
Q ss_pred CcccEEEecccccCCCCHH--HHHHHHHHHHhc--CCCEEEEEecCCC
Q 012511 165 REHDLVIASYVLGEVPSLQ--DRITIVRQLWDL--TRDVLVLVEPGTP 208 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~--~r~~~i~~Lw~~--~gG~LVlVEpGtp 208 (462)
++||+||++==+|.=.... ...++|...-+. +||.|-||-.|.+
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l 270 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL 270 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC
Confidence 4999999997777543221 122344433332 6999999988443
No 121
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.17 E-value=1.6e-05 Score=73.71 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=67.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+..+++|||||+|+.+..++...| ..+++++|.++++++..+.+++.+. ++..+... ....++.. .++|.
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p--~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~-----Ap~~L~~~-~~~da 105 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGP--SGRVIAIERDEEALELIERNAARFGVDNLEVVEGD-----APEALPDL-PSPDA 105 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc-----chHhhcCC-CCCCE
Confidence 347999999999999988775554 5799999999999999998887764 22233221 11123222 27999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
|+..-. ..++ .+++.+|.. +||.||+
T Consensus 106 iFIGGg-~~i~------~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 106 IFIGGG-GNIE------EILEAAWERLKPGGRLVA 133 (187)
T ss_pred EEECCC-CCHH------HHHHHHHHHcCcCCeEEE
Confidence 999877 4442 356666664 7999987
No 122
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.17 E-value=2.1e-05 Score=72.69 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=63.2
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC--CC--ceecchhHhh-hhhccCCCC
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LP--LIHSYNSIQA-LNKDISKSE 164 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~--~~--~i~~~~~~~~-l~~~l~~~~ 164 (462)
.+.+.+||++|||+|....+++...+ ..+|++.|.++ .++..+..++.... .. .+.. ..|.+ ..... ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~--~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~-L~Wg~~~~~~~-~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG--AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRP-LDWGDELDSDL-LEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S--HHHHHHHHHHTT--------EEEE---TTS-HHHHH-HS-
T ss_pred hcCCceEEEECCccchhHHHHHhccC--CceEEEeccch-hhHHHHHHHHhccccccccccCcE-EEecCcccccc-ccc
Confidence 35678999999999988888777532 46899999999 88887777654321 11 1111 11111 11111 134
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
.+||+|+++-++..-...+.....+..+++..+.+++....
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 68999999999987655566677888888754444444443
No 123
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.16 E-value=2e-05 Score=76.52 Aligned_cols=95 Identities=19% Similarity=0.289 Sum_probs=70.3
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccE
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+++..++||+|+|.|.++..++..| .+|++.|.|..|...-++ +++ ..+.. .++. ....+||+
T Consensus 92 ~~~~~~lLDlGAGdG~VT~~l~~~f----~~v~aTE~S~~Mr~rL~~--kg~---~vl~~----~~w~----~~~~~fDv 154 (265)
T PF05219_consen 92 DWKDKSLLDLGAGDGEVTERLAPLF----KEVYATEASPPMRWRLSK--KGF---TVLDI----DDWQ----QTDFKFDV 154 (265)
T ss_pred cccCCceEEecCCCcHHHHHHHhhc----ceEEeecCCHHHHHHHHh--CCC---eEEeh----hhhh----ccCCceEE
Confidence 4567899999999999998888765 469999999999766543 222 22211 1121 23468999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|.|-|+|.--..+...+.-+++.++ |+|.|||
T Consensus 155 IscLNvLDRc~~P~~LL~~i~~~l~-p~G~lil 186 (265)
T PF05219_consen 155 ISCLNVLDRCDRPLTLLRDIRRALK-PNGRLIL 186 (265)
T ss_pred EeehhhhhccCCHHHHHHHHHHHhC-CCCEEEE
Confidence 9999999988888887777777665 6999887
No 124
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.13 E-value=2.7e-05 Score=75.47 Aligned_cols=105 Identities=13% Similarity=0.231 Sum_probs=62.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccC-CCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDIS-KSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~-~~~~~f 167 (462)
++.+|||+|||+|..+.+++...+. ..+++++|.++++.+.|++.++..+- +.++... ....+..-.+ ...++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gd-a~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSD-ALSALDQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHHhCCCCCCC
Confidence 4689999999999877776665553 46899999999999999998865431 2222221 1111111011 124689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|+|++-.-= +....-.+.+..+++ +||.+|+
T Consensus 146 D~VfiDa~k---~~y~~~~~~~~~ll~-~GG~ii~ 176 (234)
T PLN02781 146 DFAFVDADK---PNYVHFHEQLLKLVK-VGGIIAF 176 (234)
T ss_pred CEEEECCCH---HHHHHHHHHHHHhcC-CCeEEEE
Confidence 999875311 111222333344444 6886554
No 125
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.11 E-value=2.8e-05 Score=83.61 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=51.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+|||+|||+|..+.+++..++ ..+++++|+|+.|++.|+..+.... .+.++.. ++...+ ...+||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p--~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~-----D~~~~~--~~~~fDl 209 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP--NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHS-----NWFENI--EKQKFDF 209 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeec-----chhhhC--cCCCccE
Confidence 46899999999999888877665 3589999999999999998875432 1222221 121112 2357999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
||++
T Consensus 210 IvsN 213 (506)
T PRK01544 210 IVSN 213 (506)
T ss_pred EEEC
Confidence 9984
No 126
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.09 E-value=3.7e-05 Score=79.48 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=75.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
....+||+|||+|..+.+++...|+ ..++|||+++.|+..|...+... .++.++... ...+... ...+++|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~--~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~D--A~~ll~~--~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPN--KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYD--ARLLLEL--LPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCC--CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC--HHHhhhh--CCCCceeE
Confidence 3468999999999999999987763 58999999999999987776442 344333322 1111111 34678999
Q ss_pred EEecccccCCCCHH------HHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 170 VIASYVLGEVPSLQ------DRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 170 Vias~vL~el~~~~------~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
|++++..-+..... ..+..+.++++ +||.+.|.-.- ......+.+.+.
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~----~~y~~~~~e~~~ 249 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLK-PGGTLELRTDS----ELYFEFSLELFL 249 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcC-CCcEEEEEEEC----HHHHHHHHHHHH
Confidence 99876544332222 23344555554 69999985432 233344455543
No 127
>PHA03411 putative methyltransferase; Provisional
Probab=98.08 E-value=3.5e-05 Score=75.96 Aligned_cols=76 Identities=28% Similarity=0.405 Sum_probs=54.2
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
..+|||+|||+|..+..+....+ ..++++||+|+.|++.+++.+. +..++.. ++.. .. ...+||+||+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~--~~~V~gVDisp~al~~Ar~n~~---~v~~v~~-----D~~e-~~-~~~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK--PEKIVCVELNPEFARIGKRLLP---EAEWITS-----DVFE-FE-SNEKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhCc---CCEEEEC-----chhh-hc-ccCCCcEEEE
Confidence 46999999999988877766443 3589999999999999988653 2333322 1221 11 2358999999
Q ss_pred cccccCCC
Q 012511 173 SYVLGEVP 180 (462)
Q Consensus 173 s~vL~el~ 180 (462)
+--.++++
T Consensus 133 NPPF~~l~ 140 (279)
T PHA03411 133 NPPFGKIN 140 (279)
T ss_pred cCCccccC
Confidence 88877775
No 128
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.08 E-value=6e-05 Score=76.72 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=65.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
+.+|||.|||+|+.+..++.. ...++++|.|+.|++.++.+++..+ ++.++.. +.. .++...++||+|
T Consensus 183 g~~vLDp~cGtG~~lieaa~~----~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~-----D~~-~l~~~~~~~D~I 252 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLM----GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRG-----DAT-KLPLSSESVDAI 252 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHh----CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEec-----chh-cCCcccCCCCEE
Confidence 468999999999988776542 3589999999999999998876533 2122221 222 233335689999
Q ss_pred EecccccC--C-C--CH-HHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 171 IASYVLGE--V-P--SL-QDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~e--l-~--~~-~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
++.--.+. . . .. .....++..+.+. +||.++++-+..
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 99622111 1 0 01 1112334333332 699999987754
No 129
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.07 E-value=5.6e-06 Score=84.19 Aligned_cols=122 Identities=14% Similarity=0.239 Sum_probs=69.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC----C-CC---Cc----eecchhHhhhhhc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----K-DL---PL----IHSYNSIQALNKD 159 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~----~-~~---~~----i~~~~~~~~l~~~ 159 (462)
.+.+|||+|||-|.-+.-.... ....|+|+|+|...++.|++..+.. . .. .+ +........+...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~---~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA---KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 4579999999966434222221 4679999999999999999888211 0 00 01 1111111122222
Q ss_pred cCCCCCcccEEEecccccCCCCHHHH-HHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHH
Q 012511 160 ISKSEREHDLVIASYVLGEVPSLQDR-ITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRS 219 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~el~~~~~r-~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~ 219 (462)
++....+||+|-|.++||+.-..++. ..+++++-+. +||++|.. +|.+..++..+|+
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT---~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT---TPDSDEIVKRLRE 198 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE---EE-HHHHHCCHHC
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE---ecCHHHHHHHHHh
Confidence 33234699999999999998654444 4467777665 79999973 4566655444443
No 130
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.07 E-value=3.9e-05 Score=81.28 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=56.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQAL 156 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l 156 (462)
.++..+...+......+|||+|||+|+.+.+++.. ..+++++|.|+.|++.|++.++.. .++.++... ....
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d--~~~~ 357 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ----AAEVVGVEGVEAMVERARENARRNGLDNVTFYHAN--LEED 357 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeC--hHHh
Confidence 34444444443334579999999999998888764 358999999999999999887533 233333221 1111
Q ss_pred hhccCCCCCcccEEEec
Q 012511 157 NKDISKSEREHDLVIAS 173 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias 173 (462)
....+....+||+|++.
T Consensus 358 l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 358 FTDQPWALGGFDKVLLD 374 (443)
T ss_pred hhhhhhhcCCCCEEEEC
Confidence 01111224579999875
No 131
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.07 E-value=4.1e-05 Score=77.47 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceec
Q 012511 72 AVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHS 149 (462)
Q Consensus 72 ~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~ 149 (462)
.+......++..+...+....+.+|||+|||+|..+..++. ...+|+++|.|+.|++.|++.++..+ ++.++..
T Consensus 153 ~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~----~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~ 228 (315)
T PRK03522 153 TNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCAT----PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQAL 228 (315)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEc
Confidence 33333333444333333223458999999999999888876 24689999999999999998875432 2323322
Q ss_pred chhHhhhhhccCCCCCcccEEEec
Q 012511 150 YNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 150 ~~~~~~l~~~l~~~~~~fDLVias 173 (462)
+.........++||+|++.
T Consensus 229 -----D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 229 -----DSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred -----CHHHHHHhcCCCCeEEEEC
Confidence 1211111123469999977
No 132
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.05 E-value=1.4e-05 Score=75.89 Aligned_cols=109 Identities=23% Similarity=0.397 Sum_probs=72.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecc--hhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSY--NSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~--~~~~~l~~~l~~~~~~fDLV 170 (462)
..+.||.|||.|.++-.+.- + ...+|..||+++.+++.|++.+.... +.+... ..+|++ .| ...+||+|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl--~-~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f---~P-~~~~YDlI 126 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLL--P-VFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDF---TP-EEGKYDLI 126 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCC--C-C-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG--------TT-EEEE
T ss_pred cceEEecccccchhHHHHHH--H-hcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhc---cC-CCCcEeEE
Confidence 47999999999998865432 2 35689999999999999998765511 111111 112332 12 35799999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCch
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf 211 (462)
.+.++|.||+ +++..+++++.-+. ++|.+||=|.-+..|+
T Consensus 127 W~QW~lghLT-D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 127 WIQWCLGHLT-DEDLVAFLKRCKQALKPNGVIVVKENVSSSGF 168 (218)
T ss_dssp EEES-GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE
T ss_pred EehHhhccCC-HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC
Confidence 9999999997 77777777766543 7999999998888776
No 133
>PHA03412 putative methyltransferase; Provisional
Probab=98.03 E-value=4.3e-05 Score=73.72 Aligned_cols=108 Identities=13% Similarity=0.225 Sum_probs=66.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCC-CccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPR-SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~-~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
+.+|||+|||+|.++.+++...+. ...++++||+++.|++.|+.++.+ ..++.. ++.. .. ...+||+||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---~~~~~~-----D~~~-~~-~~~~FDlII 119 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---ATWINA-----DALT-TE-FDTLFDMAI 119 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---CEEEEc-----chhc-cc-ccCCccEEE
Confidence 469999999999999988775431 235899999999999999976532 333332 2211 11 245899999
Q ss_pred ecccccCCCCH---------HHHHHHHHHHHhc-CCCEEEEEecCCCCchH
Q 012511 172 ASYVLGEVPSL---------QDRITIVRQLWDL-TRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 172 as~vL~el~~~---------~~r~~~i~~Lw~~-~gG~LVlVEpGtp~Gf~ 212 (462)
++==...+... .--..++...++. +.|.+ |=|.+..||.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~--ILP~~~~~~~ 168 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF--IIPQMSANFR 168 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE--EeCcccccCc
Confidence 97433333211 1112234433333 45666 4466666663
No 134
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.03 E-value=1.6e-05 Score=72.96 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=67.1
Q ss_pred CeEEEECCchhHHHHHHHHh-CCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 94 AKVLDFGAGTGSAFWALREV-WPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~-~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
.+|||+|||.|.++..+++. |+ .+.++||.|+..+++|+.+++.......+. +...++... ....++||+|+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~---~~L~GvDYs~~AV~LA~niAe~~~~~n~I~--f~q~DI~~~-~~~~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQ---SKLTGVDYSEKAVELAQNIAERDGFSNEIR--FQQLDITDP-DFLSGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCC---CCccccccCHHHHHHHHHHHHhcCCCccee--EEEeeccCC-cccccceeEEee
Confidence 39999999999999887763 43 248999999999999999987643221121 111223221 234678999875
Q ss_pred cccccCCC----CHHHH----HHHHHHHHhcCCCEEEEE
Q 012511 173 SYVLGEVP----SLQDR----ITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 173 s~vL~el~----~~~~r----~~~i~~Lw~~~gG~LVlV 203 (462)
--++.-+. .+..| +..++++++ ++|.+||.
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvIt 180 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVIT 180 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccC-CCcEEEEE
Confidence 44443221 12233 457788887 79999983
No 135
>PLN02366 spermidine synthase
Probab=98.02 E-value=6.8e-05 Score=75.64 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=65.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCC-CCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISK-SEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~-~~~~f 167 (462)
.|.+||++|||.|..+..+.+. + ...++++||+++.+++.|++.+.... +-+.+... ..+....+.. ..++|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi--~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-S-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLH--IGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-C-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEE--EChHHHHHhhccCCCC
Confidence 4789999999999988888764 3 36799999999999999999775321 11222110 0111111111 24689
Q ss_pred cEEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEE
Q 012511 168 DLVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 168 DLVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlV 203 (462)
|+||+-..-...+. ..+-.+.+.++++ +||.+++-
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~q 205 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCTQ 205 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEC
Confidence 99998543222221 1223445555554 79998764
No 136
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=3.3e-05 Score=71.49 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=66.2
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCc
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
.+++.+.+|||+|||||.++.+++- ++ -.+|+|||+.+++++.++.+..... ++.++. .+ +.....+
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~-lG--a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~-----~d----v~~~~~~ 108 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAAL-LG--ASRVLAVDIDPEALEIARANAEELLGDVEFVV-----AD----VSDFRGK 108 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHh-cC--CcEEEEEecCHHHHHHHHHHHHhhCCceEEEE-----cc----hhhcCCc
Confidence 3677788999999999999888775 33 4689999999999999999887532 222221 11 2224567
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 167 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+|.||.+--+.-...-.+ ..++...++. ..++.-|-
T Consensus 109 ~dtvimNPPFG~~~rhaD-r~Fl~~Ale~-s~vVYsiH 144 (198)
T COG2263 109 FDTVIMNPPFGSQRRHAD-RPFLLKALEI-SDVVYSIH 144 (198)
T ss_pred cceEEECCCCccccccCC-HHHHHHHHHh-hheEEEee
Confidence 888887754443321222 2355555654 44444443
No 137
>PLN02476 O-methyltransferase
Probab=97.98 E-value=0.00015 Score=71.98 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=66.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhcc-CCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDI-SKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l-~~~~~~f 167 (462)
++++|||+|+|+|..+..++...++ ..+++.+|.++++.+.|++.++..+- +.++... -...+.... ....++|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~-~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd-A~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPE-SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL-AAESLKSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC-HHHHHHHHHhcccCCCC
Confidence 6789999999999888777777764 45799999999999999999876532 2222221 111122111 1123689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCc
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 210 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~G 210 (462)
|+|+.-.- ...-..++..++++ +||.+| ++.---.|
T Consensus 196 D~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV-~DNvL~~G 233 (278)
T PLN02476 196 DFAFVDAD------KRMYQDYFELLLQLVRVGGVIV-MDNVLWHG 233 (278)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCcEEE-EecCccCC
Confidence 99987532 22223333333332 577655 45433333
No 138
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.97 E-value=6.6e-05 Score=79.38 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=68.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
.+.+|||+|||+|..+..+++..+. ..+++++|.+++|++.+++.++..+ ++..+... ...+....+...++||.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~-~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D--~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGD-QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAAD--SRNLLELKPQWRGYFDR 328 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCC--hhhcccccccccccCCE
Confidence 4579999999999988888876542 4589999999999999998886543 22222211 11111000122458999
Q ss_pred EEec------ccccCCCCH------HH-------HHHHHHHHHhc--CCCEEEEEe
Q 012511 170 VIAS------YVLGEVPSL------QD-------RITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 170 Vias------~vL~el~~~------~~-------r~~~i~~Lw~~--~gG~LVlVE 204 (462)
|++. .++..-++. .. ..+++.+.++. +||.||...
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9962 234333321 11 23456666664 799998754
No 139
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.96 E-value=7.6e-05 Score=78.73 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=69.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC--CCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK--SEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~--~~~~fDL 169 (462)
++.+|||+|||||..+..+++..+ ..+++++|.|+.|++.+++.++..+ +. +.......+.. ..+. ...+||.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g-~~-~~v~~~~~d~~-~~~~~~~~~~fD~ 312 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLG-LT-IKAETKDGDGR-GPSQWAENEQFDR 312 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeccccc-cccccccccccCE
Confidence 457999999999998888888765 3589999999999999999887543 21 11000001111 1111 3467999
Q ss_pred EEe------cccccCCCCH------H-------HHHHHHHHHHhc--CCCEEEEEec
Q 012511 170 VIA------SYVLGEVPSL------Q-------DRITIVRQLWDL--TRDVLVLVEP 205 (462)
Q Consensus 170 Via------s~vL~el~~~------~-------~r~~~i~~Lw~~--~gG~LVlVEp 205 (462)
|++ +.++...++. + ....++...++. +||.||...-
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 985 2345554431 1 123566666653 7999998764
No 140
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.94 E-value=3.6e-05 Score=75.68 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=57.5
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 158 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~ 158 (462)
.++..+...+......+|||+|||+|+.+..+.+. ..+++++|.++.|++.+++.+....++.++.. +..
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~----~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~-----D~~- 85 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR----AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEG-----DAL- 85 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHhccCCCEEEEEe-----ccc-
Confidence 34444554444344579999999999999988874 34899999999999999987764333433332 121
Q ss_pred ccCCCCCcccEEEecccc
Q 012511 159 DISKSEREHDLVIASYVL 176 (462)
Q Consensus 159 ~l~~~~~~fDLVias~vL 176 (462)
.++ ...||+||++.-.
T Consensus 86 ~~~--~~~~d~Vv~NlPy 101 (258)
T PRK14896 86 KVD--LPEFNKVVSNLPY 101 (258)
T ss_pred cCC--chhceEEEEcCCc
Confidence 122 2357888876443
No 141
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.94 E-value=9.1e-05 Score=71.33 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=69.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--------------CCCCceecchhHhhhh
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--------------KDLPLIHSYNSIQALN 157 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--------------~~~~~i~~~~~~~~l~ 157 (462)
++.+||+.|||.|.-+..+++ ...+|++||.|+..++.+.+-..-. ..+.++. .++-
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~----~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~-----gD~f 113 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS----KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV-----ADIF 113 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh----CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEE-----ccCc
Confidence 357999999999987766665 3568999999999999875521100 0111111 1221
Q ss_pred hccC---CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEe
Q 012511 158 KDIS---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 158 ~~l~---~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
. ++ ...++||+|.-..+|..|+ ++.|...++.|.+. +||.++++-
T Consensus 114 ~-l~~~~~~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 114 N-LPKIANNLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred C-CCccccccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 1 11 1235899999999999997 88888777777663 788887764
No 142
>PRK03612 spermidine synthase; Provisional
Probab=97.93 E-value=0.0001 Score=79.62 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=64.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh--hcCCC----CCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL--MQGPK----DLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l--l~~~~----~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
+|++|||+|||+|..+..+.+ .+ ...++++||++++|++.+++. +.... +.|.++.. ..|....+....+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi--~~Da~~~l~~~~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVV--NDDAFNWLRKLAE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEE--EChHHHHHHhCCC
Confidence 578999999999998887776 33 347999999999999999983 22211 11222110 0111111222346
Q ss_pred cccEEEecccccCCCCH-----HHHHHHHHHHHhcCCCEEEEE
Q 012511 166 EHDLVIASYVLGEVPSL-----QDRITIVRQLWDLTRDVLVLV 203 (462)
Q Consensus 166 ~fDLVias~vL~el~~~-----~~r~~~i~~Lw~~~gG~LVlV 203 (462)
+||+||+...-...+.. .+-.+.++++++ +||.+++-
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~ 414 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQ 414 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEe
Confidence 89999997543322211 123445555655 68987763
No 143
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.93 E-value=0.00012 Score=72.27 Aligned_cols=129 Identities=21% Similarity=0.199 Sum_probs=81.1
Q ss_pred chhHHHHHH-HHHHHHHHCCCCCCCeEEEECCchh----HHHHHHHHhCCC---CccEEEEEeCCHHHHHHHHHhhcC--
Q 012511 71 PAVYSACYR-VLCEVRRRLPGFSPAKVLDFGAGTG----SAFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQG-- 140 (462)
Q Consensus 71 p~~Ya~~~~-vL~eL~~rlp~~~p~rVLDvG~G~G----~~~~al~~~~~~---~~~~v~~VD~S~~ml~~Ak~ll~~-- 140 (462)
|..+..+.. ++.+|.+.... ++.+|.-+||++| +.+.++.+.++. ...++++.|+|..+++.|+.-.=.
T Consensus 75 ~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~ 153 (268)
T COG1352 75 PEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSR 153 (268)
T ss_pred cHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChh
Confidence 344444433 45555544333 6789999999999 456667787763 357999999999999999753311
Q ss_pred -C-CCCCc-------eecc-------hh--------HhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc-
Q 012511 141 -P-KDLPL-------IHSY-------NS--------IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL- 195 (462)
Q Consensus 141 -~-~~~~~-------i~~~-------~~--------~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~- 195 (462)
. .+++. .... .. ..++.... ...+.||+|+|-|||-.+. .+.+..++..+...
T Consensus 154 ~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L 231 (268)
T COG1352 154 ELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYFD-EETQERILRRFADSL 231 (268)
T ss_pred HhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHh
Confidence 0 11110 0000 00 01111111 1456799999999999995 66666677776664
Q ss_pred -CCCEEEE
Q 012511 196 -TRDVLVL 202 (462)
Q Consensus 196 -~gG~LVl 202 (462)
+||+|+|
T Consensus 232 ~~gG~Lfl 239 (268)
T COG1352 232 KPGGLLFL 239 (268)
T ss_pred CCCCEEEE
Confidence 7999998
No 144
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.90 E-value=0.0001 Score=72.67 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=41.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.+.+|||+|||+|..+..+++..++ ...|+++|.|+.|++.+++.++..+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~-~g~v~a~D~~~~~l~~~~~n~~~~g 120 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKN-EGAIVANEFSKSRTKVLIANINRCG 120 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCC-CCEEEEEcCCHHHHHHHHHHHHHcC
Confidence 3479999999999999888887653 3589999999999999998886543
No 145
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.89 E-value=9.2e-05 Score=78.17 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=41.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
.+.+|||+|||||.-+.++++..+. ..+++++|.|+.|++.+++.++..
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~Dis~~rl~~~~~n~~r~ 285 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKD-QGKILAVDISREKIQLVEKHAKRL 285 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 3579999999999988888887652 468999999999999999988754
No 146
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.88 E-value=2e-05 Score=75.55 Aligned_cols=129 Identities=19% Similarity=0.086 Sum_probs=74.8
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC---CCCCCc
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPL 146 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~---~~~~~~ 146 (462)
.|+.-......|.++...++...+.+||..|||.|.-+..+++ ...+|+|||+|+..++.+.+-... ......
T Consensus 15 ~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~----~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~ 90 (218)
T PF05724_consen 15 TPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAE----QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGG 90 (218)
T ss_dssp -TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHH----TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTT
T ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHH----CCCeEEEEecCHHHHHHHHHHhccCCCcccccc
Confidence 3444444444454544444444457999999999977766666 356999999999999987332111 111111
Q ss_pred eec--c----hhHhhhhhccC-CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCE--EEEEe
Q 012511 147 IHS--Y----NSIQALNKDIS-KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDV--LVLVE 204 (462)
Q Consensus 147 i~~--~----~~~~~l~~~l~-~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~--LVlVE 204 (462)
... . ....++-. ++ ...++||+|.=.-+|.-|+ ++.|.+.+++|.+. +||. |+.++
T Consensus 91 ~~~~~~~~i~~~~gDfF~-l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 91 FKRYQAGRITIYCGDFFE-LPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp EEEETTSSEEEEES-TTT-GGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred eeeecCCceEEEEccccc-CChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 100 0 00011111 11 1235799999999999997 88888877777765 6888 44444
No 147
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.87 E-value=0.00022 Score=68.22 Aligned_cols=129 Identities=13% Similarity=0.171 Sum_probs=76.8
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
+|......-..|.-|.+.. ++++||++|.+.|..+..++...+. ..+++.+|.++++.+.|+++++..+-...+..
T Consensus 40 ~pi~~~e~g~~L~~L~~~~---~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~ 115 (219)
T COG4122 40 VPIIDPETGALLRLLARLS---GPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIEL 115 (219)
T ss_pred CCCCChhHHHHHHHHHHhc---CCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Confidence 4444444555555555432 5799999999999776666666764 56999999999999999999987653222211
Q ss_pred c---hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 150 Y---NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 150 ~---~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
. .....+.. ...++||+|+.-.-=... ..-.+.+..|++ +||.+| ++.--..|
T Consensus 116 ~~~gdal~~l~~---~~~~~fDliFIDadK~~y---p~~le~~~~lLr-~GGliv-~DNvl~~G 171 (219)
T COG4122 116 LLGGDALDVLSR---LLDGSFDLVFIDADKADY---PEYLERALPLLR-PGGLIV-ADNVLFGG 171 (219)
T ss_pred EecCcHHHHHHh---ccCCCccEEEEeCChhhC---HHHHHHHHHHhC-CCcEEE-EeecccCC
Confidence 1 11122221 246799999875421111 122333344443 455554 55444333
No 148
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.87 E-value=0.00016 Score=76.28 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=41.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
++.+|||+|||+|..+..+++..+. .+|+++|.|+.|++.+++.++..
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~--~~v~a~D~s~~~l~~~~~n~~~~ 291 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ--AQVVALDIDAQRLERVRENLQRL 291 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHc
Confidence 4579999999999988888876642 58999999999999999888654
No 149
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.86 E-value=8.3e-05 Score=77.56 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=68.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
++.+|||+|||+|.++.+++. + ...++++||.|+.+++.|++.++..+ ++.++... ..++...+.....+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~--~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D--~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM--G-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD--VFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh--C-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEcc--HHHHHHHHHhcCCCC
Confidence 357999999999998776553 2 24589999999999999999876432 12223221 111111111124579
Q ss_pred cEEEecccccCCCCHHHH----------HHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 168 DLVIASYVLGEVPSLQDR----------ITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 168 DLVias~vL~el~~~~~r----------~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
|+||+.--- ...+.... .....++++ +||.|++..-....+. ...++++.
T Consensus 295 DlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~~~---~~f~~~v~ 354 (396)
T PRK15128 295 DVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLMTS---DLFQKIIA 354 (396)
T ss_pred CEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcCCH---HHHHHHHH
Confidence 999976211 11111111 112334443 6999998654333332 33355544
No 150
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.85 E-value=0.00011 Score=70.97 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCC
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.+...+|||+|||||.++..+++. ...+|++||.|+.|+.. .+.++.. ....+. +..+.++ ...-.
T Consensus 73 ~~~~~~vlDiG~gtG~~t~~l~~~---ga~~v~avD~~~~~l~~--~l~~~~~v~~~~~~ni~-~~~~~~~----~~d~~ 142 (228)
T TIGR00478 73 DVKNKIVLDVGSSTGGFTDCALQK---GAKEVYGVDVGYNQLAE--KLRQDERVKVLERTNIR-YVTPADI----FPDFA 142 (228)
T ss_pred CCCCCEEEEcccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHH--HHhcCCCeeEeecCCcc-cCCHhHc----CCCce
Confidence 356679999999999999988873 24689999999988865 2222211 000111 0111121 11224
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.+|++++|.++. + .-+.++++. +-.++||-|--
T Consensus 143 ~~DvsfiS~~~~-l-------~~i~~~l~~-~~~~~L~KPqF 175 (228)
T TIGR00478 143 TFDVSFISLISI-L-------PELDLLLNP-NDLTLLFKPQF 175 (228)
T ss_pred eeeEEEeehHhH-H-------HHHHHHhCc-CeEEEEcChHh
Confidence 789888887762 2 245556654 55556765543
No 151
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=6.5e-05 Score=73.08 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchh
Q 012511 76 ACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNS 152 (462)
Q Consensus 76 ~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~ 152 (462)
.+..|++++.++- -+.+..|||+|||+|..+..+...++ ...+++||.|..++.+|.++++... .+..++....
T Consensus 133 ~V~~Vid~~~~~~-~~~~~~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 133 WVEAVIDALNNSE-HSKHTHILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHhhhh-hcccceEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 4556666665542 34567899999999999999999887 4689999999999999999886543 1222221000
Q ss_pred HhhhhhccCCCCCcccEEEec
Q 012511 153 IQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 153 ~~~l~~~l~~~~~~fDLVias 173 (462)
.+.....+...+++|++|++
T Consensus 210 -~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 210 -SDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred -cccccccccccCceeEEecC
Confidence 01111112345789999986
No 152
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.84 E-value=0.00018 Score=74.64 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchh
Q 012511 75 SACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNS 152 (462)
Q Consensus 75 a~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~ 152 (462)
.....++..+...+....+.+|||+|||+|+.+.+++. ...++++||.|+.+++.|+..++..+ ++.++..
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~----~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~--- 288 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAG----PDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAAL--- 288 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhh----cCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEEC---
Confidence 33333444444433222347999999999999888775 23589999999999999998875432 2223322
Q ss_pred HhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 153 IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 153 ~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
++...+.....+||+||+.=--..+ . ..++..+.+..-+.+|.|+- .|. .-|||.-+
T Consensus 289 --d~~~~~~~~~~~~D~vi~DPPr~G~--~---~~~l~~l~~~~p~~ivyvsc-~p~-----TlaRDl~~ 345 (374)
T TIGR02085 289 --DSAKFATAQMSAPELVLVNPPRRGI--G---KELCDYLSQMAPKFILYSSC-NAQ-----TMAKDIAE 345 (374)
T ss_pred --CHHHHHHhcCCCCCEEEECCCCCCC--c---HHHHHHHHhcCCCeEEEEEe-CHH-----HHHHHHHH
Confidence 1211111112459999886322222 1 12344444432356666664 232 34577643
No 153
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.84 E-value=0.00045 Score=68.13 Aligned_cols=110 Identities=17% Similarity=0.164 Sum_probs=77.7
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CC-CceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DL-PLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~-~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..|.+|||+.||+|..++-+.+..+....++.+.|.|+..++.++.+++..+ ++ .+...+. .....+.......
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dA---fd~~~l~~l~p~P 210 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDA---FDRDSLAALDPAP 210 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCC---CCHhHhhccCCCC
Confidence 4689999999999998887777777556799999999999999999987533 33 2222110 0011122234467
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEE
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 203 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlV 203 (462)
+|+|+|-+..-+++.+.....+..|... |||+||.-
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 9999999888888766555556666553 79999983
No 154
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.83 E-value=0.00011 Score=72.03 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=45.2
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL 144 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~ 144 (462)
++..+...++...+.+|||+|||+|..+..+++.. ..++++|.++.|++.++..+....++
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~----~~v~~iE~d~~~~~~l~~~~~~~~~v 77 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA----KKVTAIEIDPRLAEILRKLLSLYERL 77 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC----CcEEEEECCHHHHHHHHHHhCcCCcE
Confidence 34444444433356799999999999999888754 35999999999999998876543333
No 155
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.79 E-value=0.00025 Score=67.15 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=61.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..+|||+|||+|..+..+.... ..++++||.++.+++.++..++... ++.++.. ++...++....+||+|
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~---a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~-----D~~~~l~~~~~~fDlV 125 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY---AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNT-----NALSFLAQPGTPHNVV 125 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc-----hHHHHHhhcCCCceEE
Confidence 4699999999999887544322 3589999999999999998876532 2222222 1211122123469999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc---CCCEEEEEecCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGT 207 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~---~gG~LVlVEpGt 207 (462)
++.=-... .-..+ ++..|.+. ..+.+|+||...
T Consensus 126 ~~DPPy~~-g~~~~---~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 126 FVDPPFRK-GLLEE---TINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EECCCCCC-ChHHH---HHHHHHHCCCcCCCcEEEEEecC
Confidence 98643211 00222 33333321 235677788654
No 156
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.78 E-value=8.9e-05 Score=73.48 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=38.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
.+.+|||+|||+|..+..+++.. .+++++|.++.|++.+++.+..
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~----~~v~avE~d~~~~~~~~~~~~~ 86 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA----AKVTAVEIDRDLAPILAETFAE 86 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC----CcEEEEECCHHHHHHHHHhhcc
Confidence 45799999999999998888752 3799999999999999887643
No 157
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.78 E-value=6e-05 Score=84.29 Aligned_cols=73 Identities=15% Similarity=0.054 Sum_probs=49.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCccc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
+.+|||+|||+|.++.+++.. ...+|++||.|+.+++.|++.++..+ .+.++... ..+.+.....+||
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D-----~~~~l~~~~~~fD 610 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG---GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQAD-----CLAWLKEAREQFD 610 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEcc-----HHHHHHHcCCCcC
Confidence 579999999999988887762 23479999999999999999886432 12222221 1111111145899
Q ss_pred EEEec
Q 012511 169 LVIAS 173 (462)
Q Consensus 169 LVias 173 (462)
+||+.
T Consensus 611 lIilD 615 (702)
T PRK11783 611 LIFID 615 (702)
T ss_pred EEEEC
Confidence 99984
No 158
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.77 E-value=0.00034 Score=73.88 Aligned_cols=92 Identities=11% Similarity=0.024 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHh
Q 012511 77 CYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQ 154 (462)
Q Consensus 77 ~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~ 154 (462)
...++..+...+......+|||+|||+|+.+..++.. ..+|+++|.|+.|++.|++.++.. .++.++.... .
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~----~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~--~ 350 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ----AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTL--E 350 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh----CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCH--H
Confidence 3334444443332223479999999999999888863 358999999999999999887542 2333333221 1
Q ss_pred hhhhccCCCCCcccEEEecc
Q 012511 155 ALNKDISKSEREHDLVIASY 174 (462)
Q Consensus 155 ~l~~~l~~~~~~fDLVias~ 174 (462)
.+...+.....+||+|++.-
T Consensus 351 ~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 351 TVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred HHHHHHHhcCCCCCEEEECc
Confidence 11111112235699999643
No 159
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.77 E-value=0.00011 Score=74.26 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=52.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC-ceecc--hhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-LIHSY--NSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~-~i~~~--~~~~~l~~~l~~~~~~fD 168 (462)
...+|||||||+|.....+....+ ..+++++|+++.+++.|+..++...++. .+... ....++...+......||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~--~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY--GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 457999999999866555444333 3579999999999999999887642121 11110 011112111212356899
Q ss_pred EEEeccccc
Q 012511 169 LVIASYVLG 177 (462)
Q Consensus 169 LVias~vL~ 177 (462)
+|||+==.+
T Consensus 192 livcNPPf~ 200 (321)
T PRK11727 192 ATLCNPPFH 200 (321)
T ss_pred EEEeCCCCc
Confidence 999985443
No 160
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.76 E-value=0.00017 Score=76.44 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=65.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+.+|||+|||+|..+..+++..+. ..+++++|.|+.|++.+++.++..+ +..+... ..+.. .+. ...+||+|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g-~~~v~~~--~~Da~-~~~-~~~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQN-RGQITAVDRYPQKLEKIRSHASALG-ITIIETI--EGDAR-SFS-PEEQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhC-CCeEEEE--eCccc-ccc-cCCCCCEEE
Confidence 4479999999999988777765542 3589999999999999998886543 1111110 01111 121 345799999
Q ss_pred ec------ccccC------CCCHHH-------HHHHHHHHHhc--CCCEEEEEe
Q 012511 172 AS------YVLGE------VPSLQD-------RITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 172 as------~vL~e------l~~~~~-------r~~~i~~Lw~~--~gG~LVlVE 204 (462)
+- .++.. ..+.+. ...++.++++. +||.||+..
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 52 11111 111221 22456666554 799999855
No 161
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.76 E-value=0.00017 Score=76.40 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=51.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
++.+|||+|||+|..+..+++..+ ...+++++|+|+.+++.+++.++..+ ++.++.. +.........++||+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~-~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~-----D~~~~~~~~~~~fD~ 323 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLK-NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKAL-----DARKVHEKFAEKFDK 323 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC-----CcccccchhcccCCE
Confidence 347999999999999888887663 23589999999999999998886543 2222221 121111111267999
Q ss_pred EEec
Q 012511 170 VIAS 173 (462)
Q Consensus 170 Vias 173 (462)
|++.
T Consensus 324 Vl~D 327 (444)
T PRK14902 324 ILVD 327 (444)
T ss_pred EEEc
Confidence 9863
No 162
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.74 E-value=0.00029 Score=67.02 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=68.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccC-CCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDIS-KSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~-~~~~~f 167 (462)
+|++||++|+++|..++.++...++ ..+++.+|.++++.+.|++.++..+. +.++... ....+..-.+ ...++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~-~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gd-a~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPE-DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGD-ALEVLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTT-TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES--HHHHHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcc-cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEec-cHhhHHHHHhccCCCce
Confidence 4789999999999988888888874 57999999999999999998875432 2222221 1111221111 124689
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 168 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 168 DLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
|+|+.-.-=. +...-.+.+..+++ .|-+|+++.-...|
T Consensus 123 D~VFiDa~K~---~y~~y~~~~~~ll~--~ggvii~DN~l~~G 160 (205)
T PF01596_consen 123 DFVFIDADKR---NYLEYFEKALPLLR--PGGVIIADNVLWRG 160 (205)
T ss_dssp EEEEEESTGG---GHHHHHHHHHHHEE--EEEEEEEETTTGGG
T ss_pred eEEEEccccc---chhhHHHHHhhhcc--CCeEEEEccccccc
Confidence 9998754211 11122233334444 35566667655444
No 163
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.74 E-value=9.9e-05 Score=73.61 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=68.5
Q ss_pred CCCeEEEECCchhHH----HHHHHHhCCC--CccEEEEEeCCHHHHHHHHHhhcC---CCCCC-----------------
Q 012511 92 SPAKVLDFGAGTGSA----FWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQG---PKDLP----------------- 145 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~----~~al~~~~~~--~~~~v~~VD~S~~ml~~Ak~ll~~---~~~~~----------------- 145 (462)
.+.+|+..||++|.- +..+.+.++. ...+|+|+|+|+.+++.|+.-.=. ..++|
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 357999999999943 3334454332 235899999999999999874311 00111
Q ss_pred --ceec------chhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 146 --LIHS------YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 146 --~i~~------~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
.+.. .+...++........+.||+|+|-|+|.++. .+.+..+++++.+. |||+|++
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~-~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD-KTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 0000 0001122110001247899999999999995 67777777777664 8998876
No 164
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.73 E-value=5.5e-05 Score=71.78 Aligned_cols=114 Identities=17% Similarity=0.268 Sum_probs=83.4
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEec
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias 173 (462)
..++|+|||-|.....+.. +.+++++.+|.|-.|++.++.-- + +.+... + ... ....+++.++++||||+|
T Consensus 74 p~a~diGcs~G~v~rhl~~---e~vekli~~DtS~~M~~s~~~~q-d-p~i~~~--~-~v~-DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRG---EGVEKLIMMDTSYDMIKSCRDAQ-D-PSIETS--Y-FVG-DEEFLDFKENSVDLIISS 144 (325)
T ss_pred cceeecccchhhhhHHHHh---cchhheeeeecchHHHHHhhccC-C-CceEEE--E-Eec-chhcccccccchhhhhhh
Confidence 4799999999998877665 36889999999999998876421 1 122111 1 111 123466778999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 174 YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 174 ~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
..||+..+...-+.-++..++ |+|.+| ++--|...+-++|-.+
T Consensus 145 lslHW~NdLPg~m~~ck~~lK-PDg~Fi----asmlggdTLyELR~sl 187 (325)
T KOG2940|consen 145 LSLHWTNDLPGSMIQCKLALK-PDGLFI----ASMLGGDTLYELRCSL 187 (325)
T ss_pred hhhhhhccCchHHHHHHHhcC-CCccch----hHHhccccHHHHHHHh
Confidence 999998876666666777765 788877 3667778888888765
No 165
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00039 Score=67.34 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=79.1
Q ss_pred HHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCC
Q 012511 85 RRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 85 ~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
..+++-..+.+|||.|.|+|.++.+++...+ ...+++..|.-+++.+.|+++++.......+.. ...++...+ ..
T Consensus 87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg-~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~--~~~Dv~~~~--~~ 161 (256)
T COG2519 87 VARLGISPGSRVLEAGTGSGALTAYLARAVG-PEGHVTTYEIREDFAKTARENLSEFGLGDRVTL--KLGDVREGI--DE 161 (256)
T ss_pred HHHcCCCCCCEEEEcccCchHHHHHHHHhhC-CCceEEEEEecHHHHHHHHHHHHHhccccceEE--Eeccccccc--cc
Confidence 3344445668999999999999988887665 357999999999999999999876432111211 112333322 23
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
..||.|+ -.++++-+.++-+..+++ +||.+++.-|-
T Consensus 162 ~~vDav~-----LDmp~PW~~le~~~~~Lk-pgg~~~~y~P~ 197 (256)
T COG2519 162 EDVDAVF-----LDLPDPWNVLEHVSDALK-PGGVVVVYSPT 197 (256)
T ss_pred cccCEEE-----EcCCChHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 4889887 467788887777777776 69999998775
No 166
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.68 E-value=0.00017 Score=72.26 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=42.5
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+..+..........+|||+|||+|..+..+.+. ..+++++|+++.|++.+++.+..
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~----~~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL----AKKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh----CCcEEEEECCHHHHHHHHHHHHh
Confidence 333433333334579999999999999888763 35799999999999999987754
No 167
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.67 E-value=0.00028 Score=70.20 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=78.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC-----C---CceecchhHhhhhhccCCCC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-----L---PLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~-----~---~~i~~~~~~~~l~~~l~~~~ 164 (462)
...+||+|||-|.-+.-.-. ..+..++|+|++.-.++.|+...++..+ + .++...-+...+...++..+
T Consensus 118 ~~~~~~LgCGKGGDLlKw~k---AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDK---AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccceeccCCcccHhHhhh---hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 36799999997754432111 1467899999999999999888764321 1 11211111122333344344
Q ss_pred CcccEEEecccccCCCC-HHHHHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHH
Q 012511 165 REHDLVIASYVLGEVPS-LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSH 220 (462)
Q Consensus 165 ~~fDLVias~vL~el~~-~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~ 220 (462)
.+||||-|.+++|.--. .+....++++..+. |||++|- ..|..+.+|.++|..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg---TiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG---TIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE---ecCcHHHHHHHHHhc
Confidence 45999999999997643 33334455555553 8999995 248888888888876
No 168
>PLN02672 methionine S-methyltransferase
Probab=97.67 E-value=9.6e-05 Score=85.10 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=41.8
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+++.+|||+|||+|..+.+++..++. .+++++|+|+.+++.|+.++..
T Consensus 117 ~~~~~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 117 FRDKTVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCCCEEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH
Confidence 45679999999999999999988763 4899999999999999988753
No 169
>PRK04148 hypothetical protein; Provisional
Probab=97.61 E-value=0.00038 Score=61.48 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=63.3
Q ss_pred HHHHCCCCCCCeEEEECCchhH-HHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 84 VRRRLPGFSPAKVLDFGAGTGS-AFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 84 L~~rlp~~~p~rVLDvG~G~G~-~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
|...++..++.+|||+|||.|. .+..+.+ ...+|+++|.|+..++.++...- ..+.. ++-..-..
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~----~G~~ViaIDi~~~aV~~a~~~~~-----~~v~d-----Dlf~p~~~ 73 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKE----SGFDVIVIDINEKAVEKAKKLGL-----NAFVD-----DLFNPNLE 73 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHhCC-----eEEEC-----cCCCCCHH
Confidence 4445555566899999999995 6656664 35699999999999888876532 11211 11110011
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
.-..+|+|.+..- +.+...-+..|.++-+.-|+|
T Consensus 74 ~y~~a~liysirp------p~el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 74 IYKNAKLIYSIRP------PRDLQPFILELAKKINVPLII 107 (134)
T ss_pred HHhcCCEEEEeCC------CHHHHHHHHHHHHHcCCCEEE
Confidence 2346899987763 444455566677766777777
No 170
>PLN02823 spermine synthase
Probab=97.59 E-value=0.00046 Score=70.45 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|++||.+|+|.|..+..+.... ...++++||+++++++.|++.+.... ..+.+... ..+-...+....++||
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~--~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~--~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK--TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI--INDARAELEKRDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE--EChhHHHHhhCCCCcc
Confidence 57899999999998887766633 35789999999999999998875321 11222111 1111111222356899
Q ss_pred EEEeccc-------ccCCCCHHHHHH-HHHHHHhcCCCEEEE
Q 012511 169 LVIASYV-------LGEVPSLQDRIT-IVRQLWDLTRDVLVL 202 (462)
Q Consensus 169 LVias~v-------L~el~~~~~r~~-~i~~Lw~~~gG~LVl 202 (462)
+|++-.. ..+|- ..+..+ .+++.++ ++|.+|+
T Consensus 179 vIi~D~~dp~~~~~~~~Ly-t~eF~~~~~~~~L~-p~Gvlv~ 218 (336)
T PLN02823 179 VIIGDLADPVEGGPCYQLY-TKSFYERIVKPKLN-PGGIFVT 218 (336)
T ss_pred EEEecCCCccccCcchhhc-cHHHHHHHHHHhcC-CCcEEEE
Confidence 9998631 11121 123334 5566665 6898765
No 171
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.58 E-value=0.00098 Score=60.60 Aligned_cols=108 Identities=25% Similarity=0.254 Sum_probs=80.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc-CCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI-SKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l-~~~~~~fDLV 170 (462)
++.-||++|.|||..+-++...- .....++++|.|++......++..+.. ++... .-++...+ ......||.|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~g-v~~~~L~~iE~~~dF~~~L~~~~p~~~---ii~gd--a~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRG-VRPESLTAIEYSPDFVCHLNQLYPGVN---IINGD--AFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcC-CCccceEEEEeCHHHHHHHHHhCCCcc---ccccc--hhhHHHHHhhcCCCeeeeE
Confidence 45689999999999999988743 235789999999999887777665532 22211 11222222 2345679999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
|++--|..+| ...+.++++++... .||.||.+--|
T Consensus 122 iS~lPll~~P-~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 122 ISGLPLLNFP-MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred EeccccccCc-HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9999999997 88899999999886 69999998776
No 172
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.56 E-value=0.0011 Score=66.94 Aligned_cols=126 Identities=16% Similarity=0.298 Sum_probs=85.0
Q ss_pred hcCchhHHHHHHHHHHHHH-HC-C---CCCC-CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 68 SRMPAVYSACYRVLCEVRR-RL-P---GFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 68 ~r~p~~Ya~~~~vL~eL~~-rl-p---~~~p-~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
.++........+-+..+.. ++ + +|.. ...+|+|.|.|..+-.+...+| .+-+++.....+-.+...+.
T Consensus 147 ~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp----~ik~infdlp~v~~~a~~~~-- 220 (342)
T KOG3178|consen 147 ERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYP----HIKGINFDLPFVLAAAPYLA-- 220 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCC----CCceeecCHHHHHhhhhhhc--
Confidence 4555566566655655543 22 2 2332 6899999999999988777776 36778887776655544442
Q ss_pred CCCCceecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 142 KDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 142 ~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
..+..+... -+. .+| +-|+|++-.+||+++ +++-.+++++.|+. ++|.+|++|.-+|.
T Consensus 221 ~gV~~v~gd----mfq-~~P----~~daI~mkWiLhdwt-DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 221 PGVEHVAGD----MFQ-DTP----KGDAIWMKWILHDWT-DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred CCcceeccc----ccc-cCC----CcCeEEEEeecccCC-hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 112111111 111 133 457999999999997 78889999999996 79999999997775
No 173
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.53 E-value=0.00079 Score=63.57 Aligned_cols=127 Identities=18% Similarity=0.254 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC--CCCC--Cceecc
Q 012511 75 SACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDL--PLIHSY 150 (462)
Q Consensus 75 a~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~--~~~~--~~i~~~ 150 (462)
..+..||.++ ++... .+||+||||||.-+..++..+|. ....-.|.++..+.--+.-+.. ..|+ |..-..
T Consensus 12 ~pIl~vL~~~---l~~~~-~~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 12 DPILEVLKQY---LPDSG-TRVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred hHHHHHHHHH---hCccC-ceEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 3444555544 34321 26999999999988888888984 5788888888875433333222 2232 221100
Q ss_pred hhHhhhhhc--cCCCCCcccEEEecccccCCCCHHHHHHH---HHHHHhcCCCEEEEEecCCCCc
Q 012511 151 NSIQALNKD--ISKSEREHDLVIASYVLGEVPSLQDRITI---VRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 151 ~~~~~l~~~--l~~~~~~fDLVias~vL~el~~~~~r~~~---i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
+.....-. .+.....||.|++.|++|-.+ ......+ ..++++ +||.|++--|=...|
T Consensus 86 -~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p-~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 86 -SAPPWPWELPAPLSPESFDAIFCINMLHISP-WSAVEGLFAGAARLLK-PGGLLFLYGPFNRDG 147 (204)
T ss_pred -CCCCCccccccccCCCCcceeeehhHHHhcC-HHHHHHHHHHHHHhCC-CCCEEEEeCCcccCC
Confidence 00000000 011356899999999999887 4443434 444444 699999987755444
No 174
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.52 E-value=0.0011 Score=64.79 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=58.6
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhh
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQA 155 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~ 155 (462)
+.|..+.+. .++++||++|+++|..+++++...+. ..+++.+|.++++.+.|+..++..+- +.++... ....
T Consensus 69 ~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~-a~e~ 143 (247)
T PLN02589 69 QFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP-ALPV 143 (247)
T ss_pred HHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEecc-HHHH
Confidence 444444433 35789999999999877777766663 56899999999999999999876532 2222221 1122
Q ss_pred hhhccCC--CCCcccEEEecc
Q 012511 156 LNKDISK--SEREHDLVIASY 174 (462)
Q Consensus 156 l~~~l~~--~~~~fDLVias~ 174 (462)
+...... ..++||+|+.-.
T Consensus 144 L~~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred HHHHHhccccCCcccEEEecC
Confidence 2211111 136899998764
No 175
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.48 E-value=0.003 Score=59.20 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
...+|||++||+|++...+... ....+++||.++.+++.+++.++... +..++.... ...+. .+......||
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr---ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~-~~~l~-~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR---GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA-LRALK-FLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH-HHHHH-HhhccCCCce
Confidence 3579999999999998887763 23489999999999999988876432 112222111 11111 1111122478
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
+|+.-=-... ......+..+.+-+=...+.+|++|...
T Consensus 124 vv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 124 VIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 8877422221 1122323333222112467788888654
No 176
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.43 E-value=0.00077 Score=67.53 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=60.7
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhcc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 160 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l 160 (462)
|.|+...+....+..+||.+||.|.-+.++++..+ ...+|+|+|.++.|++.|++.+....++.+++..+ .++...+
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~-~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f--~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLG-PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNF--SNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCC-CCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCH--HHHHHHH
Confidence 44444444322346999999999999999998775 24689999999999999998876522344444321 2222222
Q ss_pred CCCCCcccEEEeccccc
Q 012511 161 SKSEREHDLVIASYVLG 177 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~ 177 (462)
+....++|.|++-.-+.
T Consensus 85 ~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 85 AEGLGKVDGILLDLGVS 101 (296)
T ss_pred HcCCCccCEEEECCCcc
Confidence 21112688887755443
No 177
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.29 E-value=0.0012 Score=64.60 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=72.0
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhh-hccC-CCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDIS-KSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~-~~l~-~~~~~fD 168 (462)
..+.+||+.|.|+|.++.+++...+ ...+|+..|..++..+.|++.++.......+.. ...++. ..++ ..+..+|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~-p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~--~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVG-PTGHVYTYEFREDRAEKARKNFERHGLDDNVTV--HHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEE--EES-GGCG--STT-TTSEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhC-CCeEEEccccCHHHHHHHHHHHHHcCCCCCcee--EecceecccccccccCccc
Confidence 3458999999999999998887665 356999999999999999999876432112211 012232 1221 1235788
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
.|+ ..||++...+..+...++++||.|++.-|..
T Consensus 116 avf-----LDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 116 AVF-----LDLPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp EEE-----EESSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred EEE-----EeCCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 876 5678888877777777744799999988863
No 178
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.23 E-value=0.0084 Score=60.79 Aligned_cols=116 Identities=9% Similarity=0.175 Sum_probs=71.3
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCC--CccEEEEEeCCHHHHHHHHHhhc--CCCCCCceecchhHhhh
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQ--GPKDLPLIHSYNSIQAL 156 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~--~~~~v~~VD~S~~ml~~Ak~ll~--~~~~~~~i~~~~~~~~l 156 (462)
..+|...++ .+..|+|+|||.|.=+..+.+.+.. ....|++||+|.++++.+...+. ..+.+... .-+.++
T Consensus 67 ~~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~---~l~gdy 141 (319)
T TIGR03439 67 SSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCA---GLLGTY 141 (319)
T ss_pred HHHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEE---EEEecH
Confidence 355665555 3458999999999755544444421 24689999999999998888776 22322211 001112
Q ss_pred hhc---cCC--CCCcccEEE-ecccccCCCCHHHHHHHHHHHHh-c--CCCEEEE
Q 012511 157 NKD---ISK--SEREHDLVI-ASYVLGEVPSLQDRITIVRQLWD-L--TRDVLVL 202 (462)
Q Consensus 157 ~~~---l~~--~~~~fDLVi-as~vL~el~~~~~r~~~i~~Lw~-~--~gG~LVl 202 (462)
... ++. ......+|+ ...++..++ +.+...+++++.+ . ++|.|+|
T Consensus 142 ~~~l~~l~~~~~~~~~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 142 DDGLAWLKRPENRSRPTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HHHHhhcccccccCCccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEE
Confidence 111 211 122345555 567999996 7788888888876 3 6777666
No 179
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.09 E-value=0.0004 Score=73.06 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=60.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEE-----eCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLV-----EPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~V-----D~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
.-..+||+|||.|++...+.+. .|+.+ |..+..+++|-+ . .+|.+-.. .-.+.+|++.+.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r------~V~t~s~a~~d~~~~qvqfale---R--Gvpa~~~~----~~s~rLPfp~~~ 181 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER------NVTTMSFAPNDEHEAQVQFALE---R--GVPAMIGV----LGSQRLPFPSNA 181 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC------CceEEEcccccCCchhhhhhhh---c--Ccchhhhh----hccccccCCccc
Confidence 3468899999999988777752 23333 333334444432 1 13322111 013467888999
Q ss_pred ccEEEecccccCCCCHHH-HHHHHHHHHhcCCCEEEEEec
Q 012511 167 HDLVIASYVLGEVPSLQD-RITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 167 fDLVias~vL~el~~~~~-r~~~i~~Lw~~~gG~LVlVEp 205 (462)
||+|-|+.++..-..... .+--+.++++ |||++|+--|
T Consensus 182 fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S~p 220 (506)
T PF03141_consen 182 FDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLSGP 220 (506)
T ss_pred hhhhhcccccccchhcccceeehhhhhhc-cCceEEecCC
Confidence 999999999865532222 2334677876 7999998543
No 180
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.07 E-value=0.0017 Score=60.51 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=66.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
..++|||+|+|+|..+.+++.. .-..|+..|..+..+...+.+...+. ++.+++. ++ + .++..||+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a---GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~-----d~---~-g~~~~~Dl~ 146 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA---GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHA-----DL---I-GSPPAFDLL 146 (218)
T ss_pred ccceeeecccccChHHHHHHHh---hhHHHHhcCCChHHHHHhhcchhhccceeEEeec-----cc---c-CCCcceeEE
Confidence 5689999999999888876652 34578888988887766665544322 2222221 11 2 256789999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+++-++.+-+-....+.....+.. .|-.+++-+||.+
T Consensus 147 LagDlfy~~~~a~~l~~~~~~l~~-~g~~vlvgdp~R~ 183 (218)
T COG3897 147 LAGDLFYNHTEADRLIPWKDRLAE-AGAAVLVGDPGRA 183 (218)
T ss_pred EeeceecCchHHHHHHHHHHHHHh-CCCEEEEeCCCCC
Confidence 999988776533333444444443 3556666677754
No 181
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.05 E-value=0.0051 Score=61.63 Aligned_cols=80 Identities=25% Similarity=0.319 Sum_probs=51.4
Q ss_pred HHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCC
Q 012511 86 RRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 86 ~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
....+|+.+-|||+|||.|.....++.. ...+|.+|+.| +|.+.|+.+.........+.... ..+. .+. .++
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqA---GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~--GKiE-die-LPE 242 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQA---GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIP--GKIE-DIE-LPE 242 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHh---CcceEEEEehh-HHHHHHHHHHhcCCccceEEEcc--Cccc-ccc-Cch
Confidence 3345789999999999999877655542 45789999987 58889999887642112221100 0111 111 246
Q ss_pred cccEEEec
Q 012511 166 EHDLVIAS 173 (462)
Q Consensus 166 ~fDLVias 173 (462)
+.|+||+-
T Consensus 243 k~DviISE 250 (517)
T KOG1500|consen 243 KVDVIISE 250 (517)
T ss_pred hccEEEec
Confidence 88999874
No 182
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.01 Score=54.82 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=54.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
|.-+||+|||+|..+-.++.... ...-+.++|+|+.+.+..++-++... ++..+. .++...+. .++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~-~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~-----tdl~~~l~--~~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG-PQALYLATDINPEALEATLETARCNRVHIDVVR-----TDLLSGLR--NESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhcCCccceee-----hhHHhhhc--cCCccEEE
Confidence 67899999999998888887665 35678999999999988777665422 222222 23444443 27889888
Q ss_pred ec--ccccCC
Q 012511 172 AS--YVLGEV 179 (462)
Q Consensus 172 as--~vL~el 179 (462)
.+ |+..+-
T Consensus 116 fNPPYVpt~~ 125 (209)
T KOG3191|consen 116 FNPPYVPTSD 125 (209)
T ss_pred ECCCcCcCCc
Confidence 75 665443
No 183
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.02 E-value=0.0017 Score=63.63 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=77.6
Q ss_pred HHHHHHHhcC---chhHH---HHHHHHHHHHHHCC--CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHH
Q 012511 61 ETIAYVASRM---PAVYS---ACYRVLCEVRRRLP--GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQR 132 (462)
Q Consensus 61 e~~AYla~r~---p~~Ya---~~~~vL~eL~~rlp--~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~ 132 (462)
+..+|+...+ ....+ .+...|..+.+... ..++.++|||||||-. ..++.. - +...++++.|.++.-++
T Consensus 17 dP~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPti-y~~lsa-~-~~f~~I~l~dy~~~N~~ 93 (256)
T PF01234_consen 17 DPRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTI-YQLLSA-C-EWFEEIVLSDYSEQNRE 93 (256)
T ss_dssp -HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT---GGGTTG-G-GTEEEEEEEESSHHHHH
T ss_pred CHHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHH-HhhhhH-H-HhhcceEEeeccHhhHH
Confidence 5566765433 12222 33345555555542 3456799999999933 222221 0 13578999999999888
Q ss_pred HHHHhhcCCCCCCceec---------c-hhH----h------------hhhhccC--C---CCCcccEEEecccccCCC-
Q 012511 133 AGQSLMQGPKDLPLIHS---------Y-NSI----Q------------ALNKDIS--K---SEREHDLVIASYVLGEVP- 180 (462)
Q Consensus 133 ~Ak~ll~~~~~~~~i~~---------~-~~~----~------------~l~~~l~--~---~~~~fDLVias~vL~el~- 180 (462)
..++-+++.....+.+. . ..+ . ++.+.-| . .+.+||+|+++++|.-..
T Consensus 94 el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~ 173 (256)
T PF01234_consen 94 ELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACK 173 (256)
T ss_dssp HHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-S
T ss_pred HHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcC
Confidence 77776665321111000 0 000 0 1111111 1 123599999999997764
Q ss_pred CHHHHHHHHHHHHhc--CCCEEEEEecCC
Q 012511 181 SLQDRITIVRQLWDL--TRDVLVLVEPGT 207 (462)
Q Consensus 181 ~~~~r~~~i~~Lw~~--~gG~LVlVEpGt 207 (462)
+.++-...++++.++ |||+||++.--.
T Consensus 174 d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 174 DLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 455556677777765 899999986543
No 184
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.01 E-value=0.0035 Score=63.35 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=51.8
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecch-hHhhhhhccCCCCCccc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYN-SIQALNKDISKSEREHD 168 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~-~~~~l~~~l~~~~~~fD 168 (462)
.|+.+.|||+|||+|..+.-+++. ...+|++||.|.-+ +.|++++........+.... .+.++ .+| .++.|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA---GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP--~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA---GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP--VEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh---CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC--cccee
Confidence 378899999999999877655553 34689999998765 88888886644322222110 01112 233 57899
Q ss_pred EEEeccc
Q 012511 169 LVIASYV 175 (462)
Q Consensus 169 LVias~v 175 (462)
+||+-++
T Consensus 130 iIvSEWM 136 (346)
T KOG1499|consen 130 IIVSEWM 136 (346)
T ss_pred EEeehhh
Confidence 9998654
No 185
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.96 E-value=0.0028 Score=60.25 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=60.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC-CCCCcccEEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 171 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~-~~~~~fDLVi 171 (462)
+.++|||||=......... ...+|+.||.++.- .. +.... ++...+| ...++||+|+
T Consensus 52 ~lrlLEVGals~~N~~s~~-----~~fdvt~IDLns~~-----------~~--I~qqD----Fm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-----GWFDVTRIDLNSQH-----------PG--ILQQD----FMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccccc-----CceeeEEeecCCCC-----------CC--ceeec----cccCCCCCCcccceeEEE
Confidence 4799999986443332222 23469999988621 11 11111 1333344 2467899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--CCCE-----EEEEecC
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--TRDV-----LVLVEPG 206 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~gG~-----LVlVEpG 206 (462)
+|.||+.+|++.+|-+.+++..+. ++|. |.||=|-
T Consensus 110 ~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 110 LSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 999999999999998877666553 6777 8888664
No 186
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0021 Score=57.11 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=57.9
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecchhHhhhhhc
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKD 159 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~~~~~~l~~~ 159 (462)
+.-|....+++.++.|+|+|||.|....++.- + ....+.|+|+.++.++.+..++.... ++.+++. ++..
T Consensus 37 ~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm--~-~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqc-----dild- 107 (185)
T KOG3420|consen 37 LYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM--P-KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQC-----DILD- 107 (185)
T ss_pred HHHHHhhhccccCcchhhhcCchhhhHHHhhc--C-CCceEEeeecCHHHHHHHhhchHHhhhhhheeee-----eccc-
Confidence 33344455778889999999999998866553 2 46789999999999999987765532 1222221 1211
Q ss_pred cCCCCCcccEEEeccccc
Q 012511 160 ISKSEREHDLVIASYVLG 177 (462)
Q Consensus 160 l~~~~~~fDLVias~vL~ 177 (462)
+....+.||.+|.+--+.
T Consensus 108 le~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 108 LELKGGIFDTAVINPPFG 125 (185)
T ss_pred hhccCCeEeeEEecCCCC
Confidence 122346788887765444
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0052 Score=57.95 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=72.8
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC----
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP---- 145 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~---- 145 (462)
.|-.|+.++..|....+ | +.+.||+|+|+|.++-.++...+......++||.=++.++.+++.+...-..+
T Consensus 65 Ap~mha~~le~L~~~L~--p---G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~ 139 (237)
T KOG1661|consen 65 APHMHATALEYLDDHLQ--P---GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSS 139 (237)
T ss_pred chHHHHHHHHHHHHhhc--c---CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhh
Confidence 45667766655543322 3 36899999999987766665444334455999999999999998886421100
Q ss_pred -ceecc--hhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 146 -LIHSY--NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 146 -~i~~~--~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+-... ....+-. .......+||-|.+.-.-.+++ .+++.+|. +||.|||
T Consensus 140 ~~~~~~l~ivvGDgr-~g~~e~a~YDaIhvGAaa~~~p-----q~l~dqL~--~gGrlli 191 (237)
T KOG1661|consen 140 KLKRGELSIVVGDGR-KGYAEQAPYDAIHVGAAASELP-----QELLDQLK--PGGRLLI 191 (237)
T ss_pred hhccCceEEEeCCcc-ccCCccCCcceEEEccCccccH-----HHHHHhhc--cCCeEEE
Confidence 00000 0001111 1123467899999997666664 34777774 4676665
No 188
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.93 E-value=0.012 Score=52.30 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCC--CccEEEEEeCCHHHHHHHHHhhcCCCC-C-CceecchhHhhhhhccCCCCCc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGPKD-L-PLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~--~~~~v~~VD~S~~ml~~Ak~ll~~~~~-~-~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
..+.+|+|+|||-|..+..++..|++ ...+|++||.++.+.+.+..+.+.... . ..+. ........ . .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLS--FIQGDIAD-E-SSSDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccch--hhccchhh-h-cccCC
Confidence 45689999999999999988885532 246899999999999998887765331 1 0110 00001111 0 12457
Q ss_pred ccEEEecccccCCC
Q 012511 167 HDLVIASYVLGEVP 180 (462)
Q Consensus 167 fDLVias~vL~el~ 180 (462)
.+++|.-|+-..|.
T Consensus 100 ~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 100 PDILVGLHACGDLS 113 (141)
T ss_pred CeEEEEeecccchH
Confidence 78999999999995
No 189
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.90 E-value=0.0042 Score=65.92 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=68.1
Q ss_pred cCHHHHHHHHHh-cCchhHHHHHHHHHH-HHHHCCCC----CCCeEEEECCchhHHHHHHHHhC---CCCccEEEEEeCC
Q 012511 57 YRDDETIAYVAS-RMPAVYSACYRVLCE-VRRRLPGF----SPAKVLDFGAGTGSAFWALREVW---PRSLEKVNLVEPS 127 (462)
Q Consensus 57 y~~~e~~AYla~-r~p~~Ya~~~~vL~e-L~~rlp~~----~p~rVLDvG~G~G~~~~al~~~~---~~~~~~v~~VD~S 127 (462)
.+.++...|-.. +=+.-|..-.+++.+ |..+.... +...|||+|||+|.++..+.... . ...+|++||.|
T Consensus 145 ~dnL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~-~a~~VyAVEkn 223 (448)
T PF05185_consen 145 MDNLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG-GAVKVYAVEKN 223 (448)
T ss_dssp TS---HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC-CESEEEEEESS
T ss_pred hhhhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 456677777655 334444433333222 23232222 35689999999998876544421 1 24699999999
Q ss_pred HHHHHHHHHhhc--CCC-CCCceecchhHhhhhhccCCCCCcccEEEe----cccccCCCCHHHHHHHHHHHHhcCCC
Q 012511 128 QSMQRAGQSLMQ--GPK-DLPLIHSYNSIQALNKDISKSEREHDLVIA----SYVLGEVPSLQDRITIVRQLWDLTRD 198 (462)
Q Consensus 128 ~~ml~~Ak~ll~--~~~-~~~~i~~~~~~~~l~~~l~~~~~~fDLVia----s~vL~el~~~~~r~~~i~~Lw~~~gG 198 (462)
+.+....+.+++ +.. .+.+++. +... +. ...+.|+||+ ++..+|+. + +.+...+++++ ++|
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~-----d~r~-v~-lpekvDIIVSElLGsfg~nEl~-p-E~Lda~~rfLk-p~G 291 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHG-----DMRE-VE-LPEKVDIIVSELLGSFGDNELS-P-ECLDAADRFLK-PDG 291 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES------TTT-SC-HSS-EEEEEE---BTTBTTTSH-H-HHHHHGGGGEE-EEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeC-----cccC-CC-CCCceeEEEEeccCCccccccC-H-HHHHHHHhhcC-CCC
Confidence 988777665533 222 2333332 1221 21 2348999987 45566763 3 34555556665 344
No 190
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.88 E-value=0.0029 Score=65.18 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 73 VYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 73 ~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
|......++..+.+.+. ..+.+|||+|||+|+++.+++.. ..+|++||.|++|++.|++.++.
T Consensus 179 N~~~~~~l~~~v~~~~~-~~~~~vlDl~~G~G~~sl~la~~----~~~v~~vE~~~~av~~a~~n~~~ 241 (353)
T TIGR02143 179 NAAVNIKMLEWACEVTQ-GSKGDLLELYCGNGNFSLALAQN----FRRVLATEIAKPSVNAAQYNIAA 241 (353)
T ss_pred CHHHHHHHHHHHHHHhh-cCCCcEEEEeccccHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHH
Confidence 34334444444444332 12347999999999999988874 34899999999999999988754
No 191
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.88 E-value=0.0059 Score=56.40 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=34.9
Q ss_pred HHHHHHHCCCC---CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHH
Q 012511 81 LCEVRRRLPGF---SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 129 (462)
Q Consensus 81 L~eL~~rlp~~---~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ 129 (462)
|.|+.++.+-+ .+.+|||+||+||..+..+.+... ...+|++||..+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~-~~~~v~avDl~~~ 59 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG-PAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT-TEEEEEEEESSST
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc-ccceEEEEecccc
Confidence 45566665523 348999999999999988887541 2479999999876
No 192
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.81 E-value=0.00051 Score=64.38 Aligned_cols=94 Identities=16% Similarity=0.239 Sum_probs=67.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.|.++||+|+|.|..+...+.. .++|.+.+.|..|++..+.+ ++ + .+... +.. ..+-+||+|.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~----feevyATElS~tMr~rL~kk--~y-n--Vl~~~----ew~----~t~~k~dli~ 174 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT----FEEVYATELSWTMRDRLKKK--NY-N--VLTEI----EWL----QTDVKLDLIL 174 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch----HHHHHHHHhhHHHHHHHhhc--CC-c--eeeeh----hhh----hcCceeehHH
Confidence 4689999999999988776664 45799999999999876642 11 1 12111 111 2345899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|-++|.-..++-..++-|+..++.++|..|+
T Consensus 175 clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 175 CLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 9999987777777777778777766776554
No 193
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0076 Score=60.05 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=74.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|++||=+|-|.|..++.+.+.- +..+++.||+++.+++.+++.+.... +-|.+... .++-.+-+.....+||
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~--~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~--i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL--PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII--IDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC--CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE--eccHHHHHHhCCCcCC
Confidence 45799999999999999988854 37899999999999999999886533 11332211 1111111222334899
Q ss_pred EEEecccccCCC----CHHHHHHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 169 LVIASYVLGEVP----SLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 169 LVias~vL~el~----~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
+||+--+=..=+ -..+..+.++++++ ++|.+|.- .|+|...
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q-~~~~~~~ 196 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRRALK-EDGIFVAQ-AGSPFLQ 196 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHHhcC-CCcEEEEe-cCCcccc
Confidence 999754432111 01455667777776 58988876 5666554
No 194
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0066 Score=59.56 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceec
Q 012511 78 YRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 149 (462)
Q Consensus 78 ~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~ 149 (462)
..++..+........+.+||+||+|.|+.+..+.+ ...+|++||+++.|....++.+....++..++.
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~----~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~ 83 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLE----RAARVTAIEIDRRLAEVLKERFAPYDNLTVING 83 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHh----hcCeEEEEEeCHHHHHHHHHhcccccceEEEeC
Confidence 34455555554333457999999999999999987 456899999999999998888765555555543
No 195
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.74 E-value=0.0079 Score=58.86 Aligned_cols=59 Identities=27% Similarity=0.250 Sum_probs=47.5
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
+++.|....+.-.+..||++|.|||..+..+.+ ...+|+++|..+.|+....++.++.+
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe----~~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE----AGKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH----hcCeEEEEecCcHHHHHHHHHhcCCC
Confidence 445555554444568999999999999999887 46799999999999999888888764
No 196
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.74 E-value=0.0042 Score=60.71 Aligned_cols=106 Identities=20% Similarity=0.320 Sum_probs=63.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceec--chhHhhhhhccCCCCC-
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHS--YNSIQALNKDISKSER- 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~--~~~~~~l~~~l~~~~~- 165 (462)
.|.+||=+|.|.|..+..+... + ...++++||+++.+++.|++.+.... +-+.+.. .+-...+. ....
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~----~~~~~ 149 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-P-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK----ETQEE 149 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-T-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH----TSSST
T ss_pred CcCceEEEcCCChhhhhhhhhc-C-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH----hccCC
Confidence 5799999999999988887763 2 35799999999999999998764311 1122211 11112222 2233
Q ss_pred cccEEEecccccCCCC----HHHHHHHHHHHHhcCCCEEEEEe
Q 012511 166 EHDLVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 166 ~fDLVias~vL~el~~----~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
+||+||.-..-..-+. ..+-.+.+++.++ ++|.+++=-
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~ 191 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQA 191 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEc
Confidence 8999997433211111 1344566666665 689988755
No 197
>PRK00536 speE spermidine synthase; Provisional
Probab=96.71 E-value=0.0092 Score=58.81 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=64.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.|++||=+|.|.|.++..+.+. + .+|+.||+++++++.+++-+.... +-|.+.... .+. ....++||
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~~---~~~~~~fD 141 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-D---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLL---DLDIKKYD 141 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-C---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hhh---hccCCcCC
Confidence 5899999999999988887763 3 399999999999999998664321 223333211 111 11236899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
+||+-.+ . ..+-.+.+++.++ ++|.+|.
T Consensus 142 VIIvDs~----~-~~~fy~~~~~~L~-~~Gi~v~ 169 (262)
T PRK00536 142 LIICLQE----P-DIHKIDGLKRMLK-EDGVFIS 169 (262)
T ss_pred EEEEcCC----C-ChHHHHHHHHhcC-CCcEEEE
Confidence 9997632 2 2344456677776 6888885
No 198
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.66 E-value=0.0054 Score=63.39 Aligned_cols=63 Identities=21% Similarity=0.147 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 73 VYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 73 ~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
|......++..+...+.. .+.+|||++||+|+++.+++.. ..+|++||.|+.|++.|++.+..
T Consensus 188 N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~----~~~v~~vE~~~~ai~~a~~N~~~ 250 (362)
T PRK05031 188 NAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN----FRRVLATEISKPSVAAAQYNIAA 250 (362)
T ss_pred CHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh----CCEEEEEECCHHHHHHHHHHHHH
Confidence 333344444444444321 2357999999999999988874 35899999999999999987753
No 199
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.53 E-value=0.012 Score=63.87 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=40.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCC------CccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPR------SLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~------~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
...+|||.|||+|.++.++...++. ....++++|+++.++..++.++....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 3569999999999999888776531 12578999999999999988775543
No 200
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.40 E-value=0.038 Score=46.41 Aligned_cols=105 Identities=20% Similarity=0.150 Sum_probs=59.8
Q ss_pred EEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC---CceecchhHhhhhh-ccCCCC-CcccEE
Q 012511 96 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL---PLIHSYNSIQALNK-DISKSE-REHDLV 170 (462)
Q Consensus 96 VLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~---~~i~~~~~~~~l~~-~l~~~~-~~fDLV 170 (462)
+||+|||+|... .+....+ ....++++|.++.|+..++..... ... .... .+... .++... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG-RGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVV-----ADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC-CCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEE-----eccccCCCCCCCCCceeEE
Confidence 999999999865 3333221 114788899999999986554422 211 1111 11111 133333 479999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
+.....+..........+....+ ++|.+++........
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~ 161 (257)
T COG0500 124 -ISLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLLRDGL 161 (257)
T ss_pred -eeeeehhcCCHHHHHHHHHHhcC-CCcEEEEEeccCCCC
Confidence 55544443334444444555544 589998887765443
No 201
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.37 E-value=0.027 Score=60.09 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=42.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.+.+|||++||||.=+.++++.+++ ...++++|+++..++..++.++..+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~-~g~lvA~D~~~~R~~~L~~nl~r~G 162 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNN-QGAIVANEYSASRVKVLHANISRCG 162 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 4579999999999988888887763 4589999999999999888887643
No 202
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.33 E-value=0.037 Score=52.60 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=31.8
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
....+|+|||.|..+.+++-..+ ..+.+|||..+...+.|+...+
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~--~~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTG--CKKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH----SEEEEEE-SHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcC--CcEEEEEEechHHHHHHHHHHH
Confidence 46899999999988776555443 5679999999998888876553
No 203
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.0063 Score=55.14 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=63.4
Q ss_pred CCeEEEECCc-hhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccE
Q 012511 93 PAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G-~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+.+||++|.| +|.+...++-.-+ ...|.+.|.+.+.++-.+++.... ....... ...+............+||+
T Consensus 30 g~~ilelgggft~laglmia~~a~--~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~-vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAP--DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC-VLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecC--CceEEEecCCHHHHHHHHHHHhcccccccceeh-hhHHHHhhhHHHHhhCcccE
Confidence 3689999999 5654444443332 468999999999888777665332 1111111 11111111111123458999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
|+|+-.+..-..-+.....|+.+++ |.|.-++..|
T Consensus 107 IlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsP 141 (201)
T KOG3201|consen 107 ILAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSP 141 (201)
T ss_pred EEeccchhHHHHHHHHHHHHHHHhC-cccceeEecC
Confidence 9999887654334455667777776 5665555444
No 204
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.18 E-value=0.065 Score=53.03 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=80.4
Q ss_pred HHHHHHHHCC----CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---C---CCceec
Q 012511 80 VLCEVRRRLP----GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---D---LPLIHS 149 (462)
Q Consensus 80 vL~eL~~rlp----~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~---~~~i~~ 149 (462)
++.+|.+..| +..+.+||-=|||.|.++|.++.. ...+.+.|.|-.|+-...-++.... . .|+++.
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~----G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL----GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc----cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 4555555555 234579999999999999999873 5689999999999988887775411 1 144332
Q ss_pred chhH-------------------------------hhhhhccCCC--CCcccEEEecccccCCCCHHHHHHHHHHHHhcC
Q 012511 150 YNSI-------------------------------QALNKDISKS--EREHDLVIASYVLGEVPSLQDRITIVRQLWDLT 196 (462)
Q Consensus 150 ~~~~-------------------------------~~l~~~l~~~--~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~ 196 (462)
..+. .++....... .++||.|+..|.+.-.++.-+-++.|.++++ |
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk-p 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK-P 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc-c
Confidence 1110 0111100111 3689999999888777666666778888886 6
Q ss_pred CCEEEEEec
Q 012511 197 RDVLVLVEP 205 (462)
Q Consensus 197 gG~LVlVEp 205 (462)
||+.|=+-|
T Consensus 195 gG~WIN~GP 203 (270)
T PF07942_consen 195 GGYWINFGP 203 (270)
T ss_pred CCEEEecCC
Confidence 997776554
No 205
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.15 E-value=0.013 Score=53.71 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=36.6
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.|||+.||.|..+++++..+ ..|++||.++..++.|+..++-++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~----~~Viaidid~~~~~~a~hNa~vYG 45 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF----DRVIAIDIDPERLECAKHNAEVYG 45 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-----EEEEEES-HHHHHHHHHHHHHTT
T ss_pred EEEEeccCcCHHHHHHHHhC----CeEEEEECCHHHHHHHHHHHHHcC
Confidence 69999999999999999865 479999999999999999887553
No 206
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.09 E-value=0.056 Score=56.29 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=58.5
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.+|||++||+|..+..++...+ ..+|+++|.++.+++.++++++..+ +..+.. .+....+.. ..+||+|+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~--~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~-----~Da~~~l~~-~~~fD~V~ 130 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG--VEKVTLNDINPDAVELIKKNLELNGLENEKVFN-----KDANALLHE-ERKFDVVD 130 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEh-----hhHHHHHhh-cCCCCEEE
Confidence 5899999999998887765443 3589999999999999998875322 211111 122211211 35799998
Q ss_pred ecccccCCCCHHHHHHH-HHHHHhcCCCEEEEE
Q 012511 172 ASYVLGEVPSLQDRITI-VRQLWDLTRDVLVLV 203 (462)
Q Consensus 172 as~vL~el~~~~~r~~~-i~~Lw~~~gG~LVlV 203 (462)
+.-. ..+...+.. +..+ .++|.|.+-
T Consensus 131 lDP~----Gs~~~~l~~al~~~--~~~gilyvS 157 (382)
T PRK04338 131 IDPF----GSPAPFLDSAIRSV--KRGGLLCVT 157 (382)
T ss_pred ECCC----CCcHHHHHHHHHHh--cCCCEEEEE
Confidence 7531 222222222 3222 257877774
No 207
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.08 E-value=0.064 Score=52.85 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCchhHHHH--HH-HHHHHHHHCCCC-CCCeEEEECCchhH--HHHHH-HHhCCCCccEEEEEeCCHHHHH
Q 012511 60 DETIAYVASRMPAVYSAC--YR-VLCEVRRRLPGF-SPAKVLDFGAGTGS--AFWAL-REVWPRSLEKVNLVEPSQSMQR 132 (462)
Q Consensus 60 ~e~~AYla~r~p~~Ya~~--~~-vL~eL~~rlp~~-~p~rVLDvG~G~G~--~~~al-~~~~~~~~~~v~~VD~S~~ml~ 132 (462)
.++...+...+|..-..+ .+ .|....+.+-.. .-...||+|||-=| .+-.+ ...-| ..+|+-||..+-.+.
T Consensus 32 R~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P--~aRVVYVD~DPvv~a 109 (267)
T PF04672_consen 32 REAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAP--DARVVYVDNDPVVLA 109 (267)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-T--T-EEEEEESSHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCC--CceEEEECCCchHHH
Confidence 355566666676544322 12 122211111121 34689999999322 23333 33333 479999999999999
Q ss_pred HHHHhhcCCCC--CCceecchh-H-hhhh-----hccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEE
Q 012511 133 AGQSLMQGPKD--LPLIHSYNS-I-QALN-----KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVL 202 (462)
Q Consensus 133 ~Ak~ll~~~~~--~~~i~~~~~-~-~~l~-----~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVl 202 (462)
.++.++.+..+ ..++..... . ..+. ..+.. .+.=.|+..-+||++++.++-..+++.+.+. +-|..+.
T Consensus 110 h~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~--~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ 187 (267)
T PF04672_consen 110 HARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF--DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLA 187 (267)
T ss_dssp CCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T--TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEE
T ss_pred HHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC--CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEE
Confidence 99999987654 233332210 0 0111 11111 1222577888999999877777888888876 4454445
Q ss_pred EecCCCCch-HHHHHHHHH
Q 012511 203 VEPGTPQGS-SIISQMRSH 220 (462)
Q Consensus 203 VEpGtp~Gf-~~I~~aR~~ 220 (462)
|-+.|..+. +....++++
T Consensus 188 ish~t~d~~p~~~~~~~~~ 206 (267)
T PF04672_consen 188 ISHATDDGAPERAEALEAV 206 (267)
T ss_dssp EEEEB-TTSHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHH
Confidence 555555543 333444444
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.07 E-value=0.021 Score=57.48 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=68.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCC-----CCccEEEEEeCCHHHHHHHHHhh--cCCCCC--CceecchhHhhhhhccCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWP-----RSLEKVNLVEPSQSMQRAGQSLM--QGPKDL--PLIHSYNSIQALNKDISK 162 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~-----~~~~~v~~VD~S~~ml~~Ak~ll--~~~~~~--~~i~~~~~~~~l~~~l~~ 162 (462)
...+|||-.||+|.++.++.+.+. .....++|+|.++.+..+|+..+ .+.... ...... .+......
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d----~l~~~~~~ 121 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD----SLENDKFI 121 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-----TTTSHSCT
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc----cccccccc
Confidence 346899999999999988776431 02468999999999999887543 221111 111111 11111111
Q ss_pred CCCcccEEEecccccCC--CC----------------HHHHHHHHHHHHhc--CCCEEEEEecCCCC-chHHHHHHHHHH
Q 012511 163 SEREHDLVIASYVLGEV--PS----------------LQDRITIVRQLWDL--TRDVLVLVEPGTPQ-GSSIISQMRSHI 221 (462)
Q Consensus 163 ~~~~fDLVias~vL~el--~~----------------~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~-Gf~~I~~aR~~l 221 (462)
...+||+||++--.... .. ...-..++...++. ++|.+++|-|..-. .-..-..+|+.|
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~l 201 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYL 201 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHH
Confidence 24689999986322211 10 01112345555544 68988777764321 111225679998
Q ss_pred HH
Q 012511 222 LW 223 (462)
Q Consensus 222 L~ 223 (462)
|+
T Consensus 202 l~ 203 (311)
T PF02384_consen 202 LE 203 (311)
T ss_dssp HH
T ss_pred Hh
Confidence 85
No 209
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.039 Score=58.30 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCce
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLI 147 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i 147 (462)
+-.|.+.....+.....-+...+..+|||+=||.|+++..++. ...+|++||+++++++.|++.++..+ |..+.
T Consensus 271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~----~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~ 346 (432)
T COG2265 271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK----RVKKVHGVEISPEAVEAAQENAAANGIDNVEFI 346 (432)
T ss_pred eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcc----cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEE
Confidence 3345555555555555554444457999999999999999885 46799999999999999999887543 22222
Q ss_pred ecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc
Q 012511 148 HSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL 195 (462)
Q Consensus 148 ~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~ 195 (462)
.. ....+.... .....+|.||.-=-=.-+. ..+++.+.+.
T Consensus 347 ~~--~ae~~~~~~-~~~~~~d~VvvDPPR~G~~-----~~~lk~l~~~ 386 (432)
T COG2265 347 AG--DAEEFTPAW-WEGYKPDVVVVDPPRAGAD-----REVLKQLAKL 386 (432)
T ss_pred eC--CHHHHhhhc-cccCCCCEEEECCCCCCCC-----HHHHHHHHhc
Confidence 11 111121111 1235789988643222221 2356666665
No 210
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.81 E-value=0.091 Score=50.42 Aligned_cols=81 Identities=16% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhhccC-CCCCc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDIS-KSERE 166 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~~l~-~~~~~ 166 (462)
.+|+++||+|.=||..+++.+...|+ ..+|+++|.++...+.+..+.+..+ .+.+++. .....+.+.+. .+.++
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~-dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g-~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPE-DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG-PALESLDELLADGESGT 149 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCC-CceEEEEecChHHHHHhHHHHHhccccceeeeeec-chhhhHHHHHhcCCCCc
Confidence 35799999998788777777777885 7799999999999999988775432 1223322 11223333222 25679
Q ss_pred ccEEEec
Q 012511 167 HDLVIAS 173 (462)
Q Consensus 167 fDLVias 173 (462)
||+++.-
T Consensus 150 fDfaFvD 156 (237)
T KOG1663|consen 150 FDFAFVD 156 (237)
T ss_pred eeEEEEc
Confidence 9999864
No 211
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.76 E-value=0.024 Score=52.88 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=61.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC---CceecchhHhhhhhccCCCCCccc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL---PLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~---~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+|||+=||+|.....+... ...+|+.||.|....+..++.++..... ..+.. .....+.+ ......+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~-d~~~~l~~-~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG-DAFKFLLK-LAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES-SHHHHHHH-HHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc-CHHHHHHh-hcccCCCce
Confidence 4589999999999887755541 4579999999999999999888754321 11211 11112221 112357899
Q ss_pred EEEec--ccccCCCCHHHHHHHHHHHHhc---CCCEEEEEecCCC
Q 012511 169 LVIAS--YVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTP 208 (462)
Q Consensus 169 LVias--~vL~el~~~~~r~~~i~~Lw~~---~gG~LVlVEpGtp 208 (462)
+|++- |..... ...++..|.+. ..+.+|++|....
T Consensus 117 iIflDPPY~~~~~-----~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFLDPPYAKGLY-----YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE--STTSCHH-----HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEECCCcccchH-----HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99874 222110 23345555432 3577888887654
No 212
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.71 E-value=0.045 Score=51.18 Aligned_cols=110 Identities=22% Similarity=0.303 Sum_probs=63.0
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
+|+|+|+|.|--...++=.+| ..+++.+|.+..-...-+...... .|+..++.. ... ......||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p--~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R-----~E~--~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP--DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGR-----AEE--PEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T--TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES------HHH--TTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC--CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEee-----ecc--cccCCCccEEEe
Confidence 899999998843333333355 458999999998666665555432 233333321 111 234678999987
Q ss_pred cccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHH
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSH 220 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~ 220 (462)
--+ . ......++...+++ ++|.+++.- | +...+-+.+++..
T Consensus 122 RAv-~---~l~~l~~~~~~~l~-~~G~~l~~K-G-~~~~~El~~~~~~ 162 (184)
T PF02527_consen 122 RAV-A---PLDKLLELARPLLK-PGGRLLAYK-G-PDAEEELEEAKKA 162 (184)
T ss_dssp ESS-S---SHHHHHHHHGGGEE-EEEEEEEEE-S-S--HHHHHTHHHH
T ss_pred ehh-c---CHHHHHHHHHHhcC-CCCEEEEEc-C-CChHHHHHHHHhH
Confidence 543 2 34455666677766 588888763 2 2333445455444
No 213
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.63 E-value=0.056 Score=53.66 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=49.6
Q ss_pred CCCeEEEECCchh--HHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC-C--C-CCCceecchhHhhhhhccCCCCC
Q 012511 92 SPAKVLDFGAGTG--SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG-P--K-DLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 92 ~p~rVLDvG~G~G--~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~-~--~-~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
.|.+|+=+||||- |.++.+.... ....++++|.+++..+.|+++++. . . ...++... .. .....-.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~--~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d-----~~-~~~~dl~ 191 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHG--PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITAD-----VL-DVTYDLK 191 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HT--T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES------GG-GG-GG--
T ss_pred ccceEEEEcCCCcchHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecc-----hh-ccccccc
Confidence 5789999999975 4343333322 235789999999999999998872 1 1 12222211 11 1112235
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEEEe
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVE 204 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVlVE 204 (462)
.||+|+.+-....- .+...+++.++++. +.|.+|++-
T Consensus 192 ~~DvV~lAalVg~~--~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 192 EYDVVFLAALVGMD--AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp --SEEEE-TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cCCEEEEhhhcccc--cchHHHHHHHHHhhCCCCcEEEEe
Confidence 89999877555432 33455678888775 445555554
No 214
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.59 E-value=0.023 Score=49.94 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=36.3
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+|||+|||.|..+..+....+ ..+++++|+++.+.+.++..++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~--~~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA--EGRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC--CCEEEEEecCHHHHHHHHHHHHH
Confidence 489999999988877777654 24899999999999998887653
No 215
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.53 E-value=0.03 Score=57.64 Aligned_cols=64 Identities=17% Similarity=0.051 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 72 AVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 72 ~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
.|......++..+...++.. +.+|||+=||.|+++..++. ...+|+|||.++++++.|+..++.
T Consensus 177 vN~~~~~~l~~~~~~~l~~~-~~~vlDlycG~G~fsl~la~----~~~~V~gvE~~~~av~~A~~Na~~ 240 (352)
T PF05958_consen 177 VNPEQNEKLYEQALEWLDLS-KGDVLDLYCGVGTFSLPLAK----KAKKVIGVEIVEEAVEDARENAKL 240 (352)
T ss_dssp SBHHHHHHHHHHHHHHCTT--TTEEEEES-TTTCCHHHHHC----CSSEEEEEES-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhcC-CCcEEEEeecCCHHHHHHHh----hCCeEEEeeCCHHHHHHHHHHHHH
Confidence 44445555666666655533 34899999999999999987 456899999999999999988753
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.52 E-value=0.036 Score=54.59 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=47.2
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 148 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~ 148 (462)
...|...+.......|||+|+|+|..+.++.+. ..++++||.++.+.+..++.+....++.+++
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~----~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKR----GKRVIAVEIDPDLAKHLKERFASNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH----SSEEEEEESSHHHHHHHHHHCTTCSSEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc----cCcceeecCcHhHHHHHHHHhhhcccceeee
Confidence 334444333224579999999999999999885 3689999999999999888776444444444
No 217
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.35 E-value=0.043 Score=50.95 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=50.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCc-------cEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSL-------EKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~-------~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
...|||-=||+||.+..++..+.... .+++|+|+++.+++.|+.+++...-...+... ..+.. .++...+
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~--~~D~~-~l~~~~~ 105 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI--QWDAR-ELPLPDG 105 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE--E--GG-GGGGTTS
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE--ecchh-hcccccC
Confidence 36899999999999987766554311 14899999999999999998764422222110 01121 2333456
Q ss_pred cccEEEecccccC
Q 012511 166 EHDLVIASYVLGE 178 (462)
Q Consensus 166 ~fDLVias~vL~e 178 (462)
.+|.||++-=...
T Consensus 106 ~~d~IvtnPPyG~ 118 (179)
T PF01170_consen 106 SVDAIVTNPPYGR 118 (179)
T ss_dssp BSCEEEEE--STT
T ss_pred CCCEEEECcchhh
Confidence 8999998754444
No 218
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.28 E-value=0.17 Score=48.94 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=66.8
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC--CCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
..+||||||.|..+..++...|+ ..++|||+...-+..+...+... .|+-++... ...+...+ .+.++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~--~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~D--A~~~l~~~-~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE--KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGD--AVEVLDYL-IPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC--CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCC--HHHHHHhc-CCCCCeeEEE
Confidence 47999999999999999998875 47999999998887776666443 244333322 11122222 2345788887
Q ss_pred ecccccCCCCH--------HHHHHHHHHHHhcCCCEEEEEe
Q 012511 172 ASYVLGEVPSL--------QDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 172 as~vL~el~~~--------~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
..|-==+.... ...++.+.+.++ +||.|.+.-
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEe
Confidence 76643222211 123445555554 699999854
No 219
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.20 E-value=0.068 Score=50.74 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=47.5
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
...|-|+|||.+..+-++.. ..+|...|.-+. + +.+.. .++. .+|..++..|++|+
T Consensus 73 ~~viaD~GCGdA~la~~~~~-----~~~V~SfDLva~-------------n-~~Vta----cdia-~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN-----KHKVHSFDLVAP-------------N-PRVTA----CDIA-NVPLEDESVDVAVF 128 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S--------EEEEESS-S-------------S-TTEEE----S-TT-S-S--TT-EEEEEE
T ss_pred CEEEEECCCchHHHHHhccc-----CceEEEeeccCC-------------C-CCEEE----ecCc-cCcCCCCceeEEEE
Confidence 36899999999987754432 346788885532 1 11211 1232 35556789999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
..+|+.-. ..+-+.-..++++ +||.|.|+|-.+.
T Consensus 129 cLSLMGTn-~~~fi~EA~RvLK-~~G~L~IAEV~SR 162 (219)
T PF05148_consen 129 CLSLMGTN-WPDFIREANRVLK-PGGILKIAEVKSR 162 (219)
T ss_dssp ES---SS--HHHHHHHHHHHEE-EEEEEEEEEEGGG
T ss_pred EhhhhCCC-cHHHHHHHHheec-cCcEEEEEEeccc
Confidence 99999874 5554444445554 6999999997653
No 220
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=94.93 E-value=0.73 Score=47.09 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=63.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
...++||+||+||..++.+.+. ..+|++||.++ | +..+... +.+...... .+. ..+ ..+.+|+|+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r----G~~V~AVD~g~-l---~~~L~~~-~~V~h~~~d----~fr-~~p-~~~~vDwvV 275 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR----GMFVTAVDNGP-M---AQSLMDT-GQVEHLRAD----GFK-FRP-PRKNVDWLV 275 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc----CCEEEEEechh-c---CHhhhCC-CCEEEEecc----Ccc-cCC-CCCCCCEEE
Confidence 4689999999999999998873 45999999554 2 2233322 222111110 111 112 256799999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
|--+. .+.....++...+.. ....++-+----..-|+.+.+..+.|
T Consensus 276 cDmve----~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i 323 (357)
T PRK11760 276 CDMVE----KPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELI 323 (357)
T ss_pred Eeccc----CHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 87552 244445566665543 22344444444455677676666654
No 221
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.88 E-value=0.16 Score=57.15 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=49.1
Q ss_pred CCeEEEECCchhHHHHHHHHh------------CC-----C-----------------------CccEEEEEeCCHHHHH
Q 012511 93 PAKVLDFGAGTGSAFWALREV------------WP-----R-----------------------SLEKVNLVEPSQSMQR 132 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~------------~~-----~-----------------------~~~~v~~VD~S~~ml~ 132 (462)
...++|-+||+||.+..++.. |+ . ...+++|+|+++.|++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 478999999999998765442 11 0 0126999999999999
Q ss_pred HHHHhhcCCCCCCceecchhHhhhhh-ccCCCCCcccEEEec
Q 012511 133 AGQSLMQGPKDLPLIHSYNSIQALNK-DISKSEREHDLVIAS 173 (462)
Q Consensus 133 ~Ak~ll~~~~~~~~i~~~~~~~~l~~-~l~~~~~~fDLVias 173 (462)
.|+.++...+-...+.. ...++.. ..+...++||+||++
T Consensus 271 ~A~~N~~~~g~~~~i~~--~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 271 AARKNARRAGVAELITF--EVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred HHHHHHHHcCCCcceEE--EeCChhhcccccccCCCCEEEEC
Confidence 99999875432111110 0112221 111123579999987
No 222
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.85 E-value=0.062 Score=50.65 Aligned_cols=105 Identities=11% Similarity=0.137 Sum_probs=62.4
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc--CCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ--GPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~--~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
-+||+|||.|..+.+++...|+ ..++|||++...+..+...+. +..|+.+++.... ..+...+ .+++.|-|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~-~~l~~~~--~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAR-ELLRRLF--PPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CT-THHHHHS--TTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHH-HHHhhcc--cCCchheEEE
Confidence 8999999999999999988874 689999999998887766554 3445544443211 1122112 3467777766
Q ss_pred cccccCCCCH--------HHHHHHHHHHHhcCCCEEEEEec
Q 012511 173 SYVLGEVPSL--------QDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 173 s~vL~el~~~--------~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
.|-==+.... ..-+..+.++++ +||.|.+.-.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~-~gG~l~~~TD 134 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLK-PGGELYFATD 134 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEE-EEEEEEEEES
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcC-CCCEEEEEeC
Confidence 5432222111 122345555554 6999988543
No 223
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.75 E-value=0.27 Score=49.17 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC----CCCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
+.++|||+=|=||.++.+++.- ...+|+.||.|..+++.|++.+.-.+ ...++... -...+.. +. ..++|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g---GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~D-vf~~l~~-~~-~~~~f 196 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG---GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGD-VFKFLKR-LK-KGGRF 196 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT---TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES--HHHHHHH-HH-HTT-E
T ss_pred CCCceEEecCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecC-HHHHHHH-Hh-cCCCC
Confidence 3579999999999888876651 34689999999999999999875222 11222211 1111221 21 23589
Q ss_pred cEEEe---cccccCCCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCchH
Q 012511 168 DLVIA---SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 168 DLVia---s~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVEpGtp~Gf~ 212 (462)
|+||+ ++.=....-...-..++..+.+. +||.|++.-.....+.+
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 99997 33322221111223455555554 69998877665554544
No 224
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.58 E-value=0.42 Score=49.66 Aligned_cols=98 Identities=7% Similarity=0.037 Sum_probs=59.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
+.+|||+-||+|.....++...+ ...+|+++|.|+..++.++++++... +...+.. +....+.....+||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~-ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~-----Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE-GVREVFANDINPKAVESIKNNVEYNSVENIEVPNE-----DAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEch-----hHHHHHHHhCCCCCEE
Confidence 46899999999988776665432 24689999999999999998875432 1222221 1211121123579999
Q ss_pred EecccccCCCCHHHHHHHHHHHHhc--CCCEEEEE
Q 012511 171 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 203 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlV 203 (462)
..-- . . ++.. ++..+.+. .+|.|.+.
T Consensus 119 dlDP-f-G--s~~~---fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-F-G--TPAP---FVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-C-C--CcHH---HHHHHHHhcccCCEEEEE
Confidence 7643 2 2 2222 33333322 47888775
No 225
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.37 E-value=0.051 Score=52.91 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=56.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
.|.+|||+|||.=-++.-... ++ ....|++.|++..++++....+.-.+ .+.- ..+.++-.. ......|+.+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~-~~-~~a~Y~a~DID~~~ve~l~~~l~~l~-~~~~---~~v~Dl~~~--~~~~~~DlaL 176 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMP-EA-PGATYIAYDIDSQLVEFLNAFLAVLG-VPHD---ARVRDLLSD--PPKEPADLAL 176 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTT-SS-TT-EEEEEESBHHHHHHHHHHHHHTT--CEE---EEEE-TTTS--HTTSEESEEE
T ss_pred CCchhhhhhccCCceehhhcc-cC-CCcEEEEEeCCHHHHHHHHHHHHhhC-CCcc---eeEeeeecc--CCCCCcchhh
Confidence 378999999995433322222 11 24699999999999999988775432 1110 001122211 2456789999
Q ss_pred ecccccCCCCHHHH---HHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 172 ASYVLGEVPSLQDR---ITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 172 as~vL~el~~~~~r---~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
.--+|+-|. ...+ +++|+.+ ..-.+|+-.|-...|.
T Consensus 177 llK~lp~le-~q~~g~g~~ll~~~---~~~~~vVSfPtrSL~g 215 (251)
T PF07091_consen 177 LLKTLPCLE-RQRRGAGLELLDAL---RSPHVVVSFPTRSLGG 215 (251)
T ss_dssp EET-HHHHH-HHSTTHHHHHHHHS---CESEEEEEEES-----
T ss_pred HHHHHHHHH-HHhcchHHHHHHHh---CCCeEEEecccccccc
Confidence 887777773 2222 3334433 3446666666444443
No 226
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.18 E-value=0.29 Score=46.90 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=57.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC-CceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~-~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
.+.+||-+|+.+||..-.+++..+ ....|.+|+.|+.+.+-.-.+.+.-.|+ |.+.....-..+. ..-+..|+|
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg-~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~----~lv~~VDvI 147 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVG-PDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR----MLVEMVDVI 147 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT----TTS--EEEE
T ss_pred CCCEEEEecccCCCccchhhhccC-CCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh----cccccccEE
Confidence 347999999999999999999876 3568999999996544333444333443 4443211001111 123478888
Q ss_pred EecccccCCCCHHHHHHHH---HHHHhcCCCEEEEEe
Q 012511 171 IASYVLGEVPSLQDRITIV---RQLWDLTRDVLVLVE 204 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i---~~Lw~~~gG~LVlVE 204 (462)
++--. .+++...++ +.+++ +||.++|+=
T Consensus 148 ~~DVa-----Qp~Qa~I~~~Na~~fLk-~gG~~~i~i 178 (229)
T PF01269_consen 148 FQDVA-----QPDQARIAALNARHFLK-PGGHLIISI 178 (229)
T ss_dssp EEE-S-----STTHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred EecCC-----ChHHHHHHHHHHHhhcc-CCcEEEEEE
Confidence 76533 233322222 23344 688888764
No 227
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.16 E-value=0.061 Score=53.13 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=66.8
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
...+||+|||.|-.+- .....-+++.|.+...+..++..=. .+.. +.+.. .+|..+..||.+++
T Consensus 46 gsv~~d~gCGngky~~------~~p~~~~ig~D~c~~l~~~ak~~~~--~~~~-------~ad~l-~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG------VNPLCLIIGCDLCTGLLGGAKRSGG--DNVC-------RADAL-KLPFREESFDAALS 109 (293)
T ss_pred cceeeecccCCcccCc------CCCcceeeecchhhhhccccccCCC--ceee-------hhhhh-cCCCCCCccccchh
Confidence 4689999999986431 1123468899999988877764211 0111 11111 35666789999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--CCCEEEEEe
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 204 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~--~gG~LVlVE 204 (462)
.-++|||.+...|..+++.+.+. +||..++--
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999888888888888875 788666543
No 228
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.13 E-value=0.17 Score=49.39 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=63.7
Q ss_pred HCCCCC--CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC------CC-CCCceecchhHhhhh
Q 012511 87 RLPGFS--PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG------PK-DLPLIHSYNSIQALN 157 (462)
Q Consensus 87 rlp~~~--p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~------~~-~~~~i~~~~~~~~l~ 157 (462)
.+++|+ +.+||++|+|+|....+++-.+ ..+|+..|....+......+..+ .+ ++. +.. ..|....
T Consensus 79 ~~~g~~~~~~~vlELGsGtglvG~~aa~~~---~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~-v~~-L~Wg~~~ 153 (248)
T KOG2793|consen 79 TLIGFKTKYINVLELGSGTGLVGILAALLL---GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVI-VAI-LVWGNAL 153 (248)
T ss_pred ccccccccceeEEEecCCccHHHHHHHHHh---cceeccCCchhhHHHHHHhhhhhhhhhhhcCCcee-EEE-EecCCcc
Confidence 455554 6789999999996555444433 34788888777665544332221 11 111 111 0111100
Q ss_pred hccCCCCCc-ccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 158 KDISKSERE-HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 158 ~~l~~~~~~-fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
. ...-... +|+|+++-++-+....+.....+..|+.. ++.+.+
T Consensus 154 ~-~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~-~~~i~l 197 (248)
T KOG2793|consen 154 D-VSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAK-DGTIFL 197 (248)
T ss_pred c-HhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhc-CCeEEE
Confidence 0 0011123 99999999999988888888888888875 554333
No 229
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.11 E-value=0.21 Score=50.15 Aligned_cols=119 Identities=24% Similarity=0.349 Sum_probs=64.7
Q ss_pred CeEEEECCchhHHHHHHHHhCC----C--------------CccEEEEEeCCH--HHHHHHHHhhcCCC---------CC
Q 012511 94 AKVLDFGAGTGSAFWALREVWP----R--------------SLEKVNLVEPSQ--SMQRAGQSLMQGPK---------DL 144 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~----~--------------~~~~v~~VD~S~--~ml~~Ak~ll~~~~---------~~ 144 (462)
.+||-||.|.|+-+.|++.+|. . ....+++||+.+ ..++.-..-+...+ +.
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999988888888881 1 114899999876 23332222222210 00
Q ss_pred Ccee-----cchhHhhhhh----ccC--CCCCcccEEEecccccCCCCHH--HHHHHHHHHHhc--CCCEEEEEecCCCC
Q 012511 145 PLIH-----SYNSIQALNK----DIS--KSEREHDLVIASYVLGEVPSLQ--DRITIVRQLWDL--TRDVLVLVEPGTPQ 209 (462)
Q Consensus 145 ~~i~-----~~~~~~~l~~----~l~--~~~~~fDLVias~vL~el~~~~--~r~~~i~~Lw~~--~gG~LVlVEpGtp~ 209 (462)
+.+. ..+...++-. .+. ......+||+.-|+|+||-+.. +-..++.+|-.. +|-.|+||| +|.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD--SpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD--SPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc--CCC
Confidence 0000 0000111100 000 0112579999999999996433 334455555543 566777777 455
Q ss_pred chHHH
Q 012511 210 GSSII 214 (462)
Q Consensus 210 Gf~~I 214 (462)
.|..|
T Consensus 246 SYS~~ 250 (315)
T PF11312_consen 246 SYSEI 250 (315)
T ss_pred Cchhe
Confidence 56544
No 230
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=94.11 E-value=0.9 Score=47.44 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=66.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC----CCceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD----LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~----~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+++|||+=|=||.++.+++.- .-.+||.||.|...++.|+++++-.+. ..++... -...+.. ......+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~D-vf~~l~~-~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGD-VFKWLRK-AERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhh-HHHHHHH-HHhcCCcc
Confidence 3689999999999998877751 245999999999999999998753321 1122211 1112221 22234599
Q ss_pred cEEEec---ccccCCC--CH----HHHHHHHHHHHhcCCCEEEEEecCCCCc
Q 012511 168 DLVIAS---YVLGEVP--SL----QDRITIVRQLWDLTRDVLVLVEPGTPQG 210 (462)
Q Consensus 168 DLVias---~vL~el~--~~----~~r~~~i~~Lw~~~gG~LVlVEpGtp~G 210 (462)
||||.- ++=+.-. +. ........++++ +||.|++.--.....
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~~~ 342 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRHFS 342 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCccC
Confidence 999872 2211111 10 112223334443 799999876555443
No 231
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.05 E-value=0.25 Score=50.33 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=65.0
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCcccEE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
+..|||==||||+.+..+.- + ...++|.|++..|++-|+.+++.+. ..+.... .+. ..+|....++|-|
T Consensus 198 G~~vlDPFcGTGgiLiEagl-~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~----~Da-~~lpl~~~~vdaI 268 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGL-M---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV----LDA-TNLPLRDNSVDAI 268 (347)
T ss_pred CCEeecCcCCccHHHHhhhh-c---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEe----ccc-ccCCCCCCccceE
Confidence 36999999999998887653 3 4689999999999999999998764 1111211 111 2345444569988
Q ss_pred Eec--ccccC-CC--C----HHHHHHHHHHHHhcCCCEEEEEec
Q 012511 171 IAS--YVLGE-VP--S----LQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 171 ias--~vL~e-l~--~----~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
++- |--.. .. . ..+.++.+..+++ +||++|+.-|
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p 311 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAAP 311 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEecC
Confidence 763 22111 11 0 1122334444443 5999999877
No 232
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=93.92 E-value=0.24 Score=47.38 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=55.5
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCc-ccE
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSERE-HDL 169 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~-fDL 169 (462)
+.+++|+|+|+|--..-++=.+|+ .+++.+|+...=+..-+.+....+ |+..++.. ..++. ...+ ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~--~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~R--aE~~~-----~~~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD--LKVTLLESLGKKIAFLREVKKELGLENVEIVHGR--AEEFG-----QEKKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC--CcEEEEccCchHHHHHHHHHHHhCCCCeEEehhh--Hhhcc-----cccccCcE
Confidence 689999999998444333334553 459999999876666666555432 33333211 12221 1223 999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVl 202 (462)
|++- .+..+ ....++...+.+ .||.++.
T Consensus 139 vtsR-Ava~L---~~l~e~~~pllk-~~g~~~~ 166 (215)
T COG0357 139 VTSR-AVASL---NVLLELCLPLLK-VGGGFLA 166 (215)
T ss_pred EEee-hccch---HHHHHHHHHhcc-cCCcchh
Confidence 8875 33333 334456666665 4666653
No 233
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=1.8 Score=42.28 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=82.4
Q ss_pred HhcCchhHH-----HHHH-HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCC--CccEEEEEeCCHHHHHH-HHHh
Q 012511 67 ASRMPAVYS-----ACYR-VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRA-GQSL 137 (462)
Q Consensus 67 a~r~p~~Ya-----~~~~-vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~--~~~~v~~VD~S~~ml~~-Ak~l 137 (462)
..++|..|. ++.+ .-.||....+ +-+++|+|+|+.+=+..+.+.+.. +..+|+.||+|...++. |+.+
T Consensus 50 I~~LPEYYpTRtEaaIl~~~a~Eia~~~g---~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai 126 (321)
T COG4301 50 ITRLPEYYPTRTEAAILQARAAEIASITG---ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAI 126 (321)
T ss_pred HhccccccCchhHHHHHHHHHHHHHHhhC---cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHH
Confidence 556666553 2333 2356666544 579999999998776666555432 45799999999998875 6677
Q ss_pred hcCCCCCCceecchhHhhhhh---ccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhc--CCCEEEE-EecCC
Q 012511 138 MQGPKDLPLIHSYNSIQALNK---DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL-VEPGT 207 (462)
Q Consensus 138 l~~~~~~~~i~~~~~~~~l~~---~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl-VEpGt 207 (462)
+.....++.... ..++.. .++ ..+.-=+++...+|..+. +.++..++.++-.. ||.+++| |+.-.
T Consensus 127 ~~~y~~l~v~~l---~~~~~~~La~~~-~~~~Rl~~flGStlGN~t-p~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 127 LREYPGLEVNAL---CGDYELALAELP-RGGRRLFVFLGSTLGNLT-PGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred HHhCCCCeEeeh---hhhHHHHHhccc-CCCeEEEEEecccccCCC-hHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 777666553221 112221 122 112223456788999995 77777777766553 6777766 44433
No 234
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.66 E-value=0.61 Score=50.45 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=65.7
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC--CCCCCceecchhHhhhhhccCCCCCcc
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~--~~~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
+.....+||+|||.|..+..++...|+ ..++|||.+..-+..+...+.. ..|+.++... ...+...+ ...+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~--~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~--~~~~~~~~--~~~sv 418 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPD--ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNN--LDLILNDL--PNNSL 418 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHhc--Ccccc
Confidence 334568999999999999999988875 5799999999876665554432 3343333221 11222222 35678
Q ss_pred cEEEecccccCCCCH--H------HHHHHHHHHHhcCCCEEEEEe
Q 012511 168 DLVIASYVLGEVPSL--Q------DRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 168 DLVias~vL~el~~~--~------~r~~~i~~Lw~~~gG~LVlVE 204 (462)
|-|...|-==+.... + +.+..+..+++ +||.+-+.-
T Consensus 419 ~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk-~gG~i~~~T 462 (506)
T PRK01544 419 DGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLK-DNGNLVFAS 462 (506)
T ss_pred cEEEEECCCCCCCCCCccccccCHHHHHHHHHhcC-CCCEEEEEc
Confidence 888766543332211 1 22345555554 699998854
No 235
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.53 E-value=0.4 Score=49.08 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=50.4
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHH--HhhcCCC----CCCceecc--hhHhhhhhccCCCCC
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQ--SLMQGPK----DLPLIHSY--NSIQALNKDISKSER 165 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak--~ll~~~~----~~~~i~~~--~~~~~l~~~l~~~~~ 165 (462)
.+||=+|.|.|.++..+.+ +| ...+++.||.+|.|++.++ ..++..+ ..|.++.+ +-.+.+. ....
T Consensus 291 ~~vLvlGGGDGLAlRellk-yP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr----~a~~ 364 (508)
T COG4262 291 RSVLVLGGGDGLALRELLK-YP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR----TAAD 364 (508)
T ss_pred ceEEEEcCCchHHHHHHHh-CC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH----hhcc
Confidence 6999999999999988887 55 4789999999999999998 3343221 12444321 1112222 2345
Q ss_pred cccEEEec
Q 012511 166 EHDLVIAS 173 (462)
Q Consensus 166 ~fDLVias 173 (462)
.||.||.-
T Consensus 365 ~fD~vIVD 372 (508)
T COG4262 365 MFDVVIVD 372 (508)
T ss_pred cccEEEEe
Confidence 89999864
No 236
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=93.44 E-value=0.59 Score=45.77 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhh
Q 012511 77 CYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQAL 156 (462)
Q Consensus 77 ~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l 156 (462)
+-.++..|+.| | ....|-|+|||-+-.+. . ....|...|.-+. +..++. .++
T Consensus 168 ld~ii~~ik~r-~--~~~vIaD~GCGEakiA~---~----~~~kV~SfDL~a~-------------~~~V~~-----cDm 219 (325)
T KOG3045|consen 168 LDVIIRKIKRR-P--KNIVIADFGCGEAKIAS---S----ERHKVHSFDLVAV-------------NERVIA-----CDM 219 (325)
T ss_pred HHHHHHHHHhC-c--CceEEEecccchhhhhh---c----cccceeeeeeecC-------------CCceee-----ccc
Confidence 33455666655 3 23689999999876543 1 2346777774321 111111 123
Q ss_pred hhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 012511 157 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 207 (462)
Q Consensus 157 ~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGt 207 (462)
. .+|..+++.|++|+..+|+.- +..+-+.-..++++ +||.|-|.|-.+
T Consensus 220 ~-~vPl~d~svDvaV~CLSLMgt-n~~df~kEa~RiLk-~gG~l~IAEv~S 267 (325)
T KOG3045|consen 220 R-NVPLEDESVDVAVFCLSLMGT-NLADFIKEANRILK-PGGLLYIAEVKS 267 (325)
T ss_pred c-CCcCccCcccEEEeeHhhhcc-cHHHHHHHHHHHhc-cCceEEEEehhh
Confidence 3 256678899999999888876 46666666677776 699999999754
No 237
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.43 E-value=0.23 Score=46.27 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=34.9
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhh
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 138 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll 138 (462)
..+.|+|+|+|..+..+++. ..+|++|+.++..-+.|++.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~----A~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA----AERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred hceeeccCCcchHHHHHHhh----hceEEEEecCcHHHHHhhhcC
Confidence 58999999999887766653 468999999999999998875
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.36 E-value=1.2 Score=42.30 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHHHHHHCCCCCC-CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCH
Q 012511 81 LCEVRRRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 128 (462)
Q Consensus 81 L~eL~~rlp~~~p-~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~ 128 (462)
|.||..+..-+++ ..|+|+||-||..+-.++...+. ...|++||+-+
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~-~~~ivavDi~p 80 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGA-GGKIVAVDILP 80 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCC-CCcEEEEECcc
Confidence 5566666654444 89999999999999888877653 44599999876
No 239
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=92.61 E-value=2.4 Score=39.69 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=63.1
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
....++||+=+|+|+....+... ....++.||.+.......+++++.... ...+.... ...+. .+ ....+|
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR---GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da-~~~L~-~~-~~~~~F 115 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR---GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA-LRALK-QL-GTREPF 115 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH-HHHHH-hc-CCCCcc
Confidence 55689999999999877765542 357899999999999999888776542 12222211 11111 11 122359
Q ss_pred cEEEeccccc-CCCCHHHHHHH-HHHHHhcCCCEEEEEecCCC
Q 012511 168 DLVIASYVLG-EVPSLQDRITI-VRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 168 DLVias~vL~-el~~~~~r~~~-i~~Lw~~~gG~LVlVEpGtp 208 (462)
|+|+.-==.+ .+-+....+.. ...-| ...+.+|++|....
T Consensus 116 DlVflDPPy~~~l~~~~~~~~~~~~~~~-L~~~~~iv~E~~~~ 157 (187)
T COG0742 116 DLVFLDPPYAKGLLDKELALLLLEENGW-LKPGALIVVEHDKD 157 (187)
T ss_pred cEEEeCCCCccchhhHHHHHHHHHhcCC-cCCCcEEEEEeCCC
Confidence 9998742222 22111211111 12222 13567777887643
No 240
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.55 E-value=2 Score=40.91 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=61.9
Q ss_pred EEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhh-hhhccCCCCCcccEEEecc
Q 012511 96 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQA-LNKDISKSEREHDLVIASY 174 (462)
Q Consensus 96 VLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~-l~~~l~~~~~~fDLVias~ 174 (462)
|.|+||--|....++.+. ....+++++|+++.-++.|++.+...+....+... ..+ +. .++ +....|.||.+-
T Consensus 1 vaDIGtDHgyLpi~L~~~--~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~r--lgdGL~-~l~-~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN--GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVR--LGDGLE-VLK-PGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT--TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEE--E-SGGG-G---GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEE--ECCccc-ccC-CCCCCCEEEEec
Confidence 689999999988887763 13568999999999999999988765422222211 011 11 121 122367777766
Q ss_pred cccCCCCHHHHHHHHHHHHhc-C-CCEEEEEecCCCCchHHHHHHHHHHHH
Q 012511 175 VLGEVPSLQDRITIVRQLWDL-T-RDVLVLVEPGTPQGSSIISQMRSHILW 223 (462)
Q Consensus 175 vL~el~~~~~r~~~i~~Lw~~-~-gG~LVlVEpGtp~Gf~~I~~aR~~lL~ 223 (462)
+ .......++.+.... . ...||| -|-+ ....+|.++..
T Consensus 75 M-----GG~lI~~ILe~~~~~~~~~~~lIL-qP~~-----~~~~LR~~L~~ 114 (205)
T PF04816_consen 75 M-----GGELIIEILEAGPEKLSSAKRLIL-QPNT-----HAYELRRWLYE 114 (205)
T ss_dssp E------HHHHHHHHHHTGGGGTT--EEEE-EESS------HHHHHHHHHH
T ss_pred C-----CHHHHHHHHHhhHHHhccCCeEEE-eCCC-----ChHHHHHHHHH
Confidence 5 233344555554433 2 235555 4433 34567999763
No 241
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.15 E-value=0.6 Score=45.60 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=51.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCC------ccEEEEEeCCHHHHHHHHHhhcCCC----CCC-ceecchhHhhhhhcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRS------LEKVNLVEPSQSMQRAGQSLMQGPK----DLP-LIHSYNSIQALNKDI 160 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~------~~~v~~VD~S~~ml~~Ak~ll~~~~----~~~-~i~~~~~~~~l~~~l 160 (462)
.+.+|+++|+|.|+++..+.+.+... ..+|+.||.|+.|.+.-++.+.... ... .+. +..+ +
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~---w~~~----l 90 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIR---WLDD----L 90 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEE---EESS----G
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccc---hhhh----h
Confidence 35799999999999998888776532 2589999999999999888886521 111 111 1111 2
Q ss_pred CCCCCcccEEEecccccCCC
Q 012511 161 SKSEREHDLVIASYVLGEVP 180 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~ 180 (462)
+... ..-+||++-+|.-||
T Consensus 91 ~~~p-~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 91 EEVP-FPGFIIANELFDALP 109 (252)
T ss_dssp GCS--CCEEEEEESSGGGS-
T ss_pred hccc-CCEEEEEeeehhcCc
Confidence 1111 345788888999887
No 242
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.03 E-value=1.2 Score=45.86 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=41.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.+.+|||+.++||.=+-++++...+....|+++|.|+.-++..+++++..+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG 206 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG 206 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC
Confidence 347999999999987777777776444567999999999888888887654
No 243
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=91.97 E-value=0.81 Score=40.82 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=57.8
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCCC---CCceecchhHhhhhhccCCCCCcccEEEecccccCCCCH--------HHHHHH
Q 012511 120 KVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSL--------QDRITI 188 (462)
Q Consensus 120 ~v~~VD~S~~ml~~Ak~ll~~~~~---~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~--------~~r~~~ 188 (462)
+|.+.|+=+++++.+++++++... +.+++ .+...+...++ .++.|+||.+ |.+||.. +.-+..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~--~sHe~l~~~i~--~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLIL--DSHENLDEYIP--EGPVDAAIFN--LGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEE--S-GGGGGGT----S--EEEEEEE--ESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEE--CCHHHHHhhCc--cCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHH
Confidence 589999999999999999976532 22232 12233433332 2478888865 5777743 234456
Q ss_pred HHHHHhc--CCCEEEEE-ecCCCCchHHHHHHHHHHH
Q 012511 189 VRQLWDL--TRDVLVLV-EPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 189 i~~Lw~~--~gG~LVlV-EpGtp~Gf~~I~~aR~~lL 222 (462)
++..++. +||.++|+ =+|.+.|.+--..+.+++-
T Consensus 75 l~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~ 111 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLA 111 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6666654 68887665 6899999877666666653
No 244
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=1.1 Score=45.96 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=43.1
Q ss_pred HHHCCCCCCCeEEEECCchhHHHHHHHHhC----CC--CccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 85 RRRLPGFSPAKVLDFGAGTGSAFWALREVW----PR--SLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 85 ~~rlp~~~p~rVLDvG~G~G~~~~al~~~~----~~--~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
-.+++...|..|+++|+|.|+.+.-+.... |+ ...+|..||+|++..+.=++.+++..
T Consensus 70 wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 70 WQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred HHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 334455567899999999999876544432 21 24689999999999999888888754
No 245
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.31 E-value=2 Score=43.45 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=64.0
Q ss_pred CCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC--CCCCcccE
Q 012511 93 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSEREHDL 169 (462)
Q Consensus 93 p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~--~~~~~fDL 169 (462)
+.+||=+|+|| |..+...++.++ ..+|+.+|.++.-++.|++ +....-.+.-+. .+.+.+...+. .....+|.
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~G--A~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~-~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMG--ASDVVITDLVANRLELAKK-FGATVTDPSSHK-SSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC--CCcEEEeecCHHHHHHHHH-hCCeEEeecccc-ccHHHHHHHHHhhccccCCCe
Confidence 47999999997 777777777786 4689999999999999998 432111111110 11222221111 12345788
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCC-chH
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ-GSS 212 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~-Gf~ 212 (462)
.+-.--++-- . ...|..+ +.+|++|++.-|.+. -|.
T Consensus 246 ~~dCsG~~~~--~---~aai~a~--r~gGt~vlvg~g~~~~~fp 282 (354)
T KOG0024|consen 246 TFDCSGAEVT--I---RAAIKAT--RSGGTVVLVGMGAEEIQFP 282 (354)
T ss_pred EEEccCchHH--H---HHHHHHh--ccCCEEEEeccCCCccccC
Confidence 7754332221 1 1123222 259999999988754 343
No 246
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=90.58 E-value=0.34 Score=51.58 Aligned_cols=44 Identities=27% Similarity=0.219 Sum_probs=38.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
...+||+-||||+...+++. ....|++|+.++..+..|+..++.
T Consensus 384 ~k~llDv~CGTG~iglala~----~~~~ViGvEi~~~aV~dA~~nA~~ 427 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALAR----GVKRVIGVEISPDAVEDAEKNAQI 427 (534)
T ss_pred CcEEEEEeecCCceehhhhc----cccceeeeecChhhcchhhhcchh
Confidence 47899999999999999887 467899999999999999876653
No 247
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.56 E-value=0.84 Score=47.24 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=51.7
Q ss_pred CCCCC-CeEEEECCchhHHHHHHHHhCCC-------------------------------------CccEEEEEeCCHHH
Q 012511 89 PGFSP-AKVLDFGAGTGSAFWALREVWPR-------------------------------------SLEKVNLVEPSQSM 130 (462)
Q Consensus 89 p~~~p-~rVLDvG~G~G~~~~al~~~~~~-------------------------------------~~~~v~~VD~S~~m 130 (462)
.+|.+ ..++|==||+||.+..++-.-.+ ....++|+|+++.|
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 45655 48999999999988755433210 00137799999999
Q ss_pred HHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEec
Q 012511 131 QRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 131 l~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias 173 (462)
++.|+.++++.+-...+.. ...++. .+......+|+||++
T Consensus 267 i~~Ak~NA~~AGv~d~I~f--~~~d~~-~l~~~~~~~gvvI~N 306 (381)
T COG0116 267 IEGAKANARAAGVGDLIEF--KQADAT-DLKEPLEEYGVVISN 306 (381)
T ss_pred HHHHHHHHHhcCCCceEEE--EEcchh-hCCCCCCcCCEEEeC
Confidence 9999999877542222221 111222 232222689999997
No 248
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.49 E-value=1.2 Score=45.96 Aligned_cols=64 Identities=27% Similarity=0.242 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHHHHHCCCCCC-CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 71 PAVYSACYRVLCEVRRRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~rlp~~~p-~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
-..|..-.++|.||...+.+|.+ ..|.|+|+|.|..+..+.=. ....|.+||.|....+.|+.+
T Consensus 131 ~~k~qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~---y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 131 RPKKQHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG---YGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc---cCceEEEeccchHHHHHHHHH
Confidence 34455556678888777766654 69999999999987766532 246899999998887777654
No 249
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=90.27 E-value=0.62 Score=44.12 Aligned_cols=76 Identities=18% Similarity=0.075 Sum_probs=43.7
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
..+|||.-||-|.++..++..- ....|+++|.++...+..++.++-..-...+... ..+... +. ....+|-|++
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~--~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~--~~D~~~-~~-~~~~~drvim 175 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHG--KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVI--NGDARE-FL-PEGKFDRVIM 175 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT---SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEE--ES-GGG-----TT-EEEEEE
T ss_pred ceEEEEccCCccHHHHHHhhhc--CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEE--cCCHHH-hc-CccccCEEEE
Confidence 4799999999999888877642 3568999999999999888776532211111110 012221 21 1678998887
Q ss_pred cc
Q 012511 173 SY 174 (462)
Q Consensus 173 s~ 174 (462)
++
T Consensus 176 ~l 177 (200)
T PF02475_consen 176 NL 177 (200)
T ss_dssp --
T ss_pred CC
Confidence 65
No 250
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=90.23 E-value=2.3 Score=42.99 Aligned_cols=67 Identities=18% Similarity=0.101 Sum_probs=49.0
Q ss_pred HHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceec
Q 012511 81 LCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHS 149 (462)
Q Consensus 81 L~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~ 149 (462)
|.|+...+....+..++|.=+|.|.-+.++++..+. .+|+++|.++.+++.|++.+.... .+.+++.
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~--g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~ 76 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT--GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHD 76 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeC
Confidence 444444443223468999999999888888887763 789999999999999999887543 3344443
No 251
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.80 E-value=0.84 Score=48.64 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=66.5
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
-..|+|..+|.|.++-|+.+. ..-|.-|-++... +...-++.. +.+...| ++.+.++.-+.+||||-+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~----~VWVMNVVP~~~~-ntL~vIydR-GLIG~yh------DWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD----PVWVMNVVPVSGP-NTLPVIYDR-GLIGVYH------DWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eeeeeeecccccHHHHHhccC----CceEEEecccCCC-Ccchhhhhc-ccchhcc------chhhccCCCCcchhheeh
Confidence 468999999999998888751 1122222222110 000111111 1122222 234444445689999999
Q ss_pred cccccCCCC---HHHHHHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHHH
Q 012511 173 SYVLGEVPS---LQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 173 s~vL~el~~---~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
++++....+ .+..+--+.++++ |+|.+||=+ ....|.+++.++-
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILR-P~G~~iiRD-----~~~vl~~v~~i~~ 480 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILR-PGGWVIIRD-----TVDVLEKVKKIAK 480 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcC-CCceEEEec-----cHHHHHHHHHHHH
Confidence 999988764 3344556677776 799998855 4578888888654
No 252
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=89.40 E-value=1 Score=45.19 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=39.9
Q ss_pred CCeEEEECCchhHH-HHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC----CceecchhHhhhhhccCCCCCcc
Q 012511 93 PAKVLDFGAGTGSA-FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL----PLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 93 p~rVLDvG~G~G~~-~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~----~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
..++||||+|.... .+.....+ .-+++|.|+++..++.|+++++..+++ .++.... -..+-..+......|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~---~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~-~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY---GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN-PDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S-T-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhc---CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC-ccccchhhhccccee
Confidence 46899999997532 22222222 247999999999999999988754222 2221110 011111222234589
Q ss_pred cEEEecccccCC
Q 012511 168 DLVIASYVLGEV 179 (462)
Q Consensus 168 DLVias~vL~el 179 (462)
|+.+|+-=++.-
T Consensus 179 dftmCNPPFy~s 190 (299)
T PF05971_consen 179 DFTMCNPPFYSS 190 (299)
T ss_dssp EEEEE-----SS
T ss_pred eEEecCCccccC
Confidence 999998666554
No 253
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.28 E-value=7.1 Score=40.32 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=35.1
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
...+||.+|||+ |..+..++...+ ..++++++.++++++.++++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g--~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLG--AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHc
Confidence 457999999987 777777777654 24699999999999998875
No 254
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=87.90 E-value=0.83 Score=47.80 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 74 YSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 74 Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
|+.+...+.|.++++.+ .-..|||+|.|||.++..+...- ...|++++.=..|.+.|+++..+.+
T Consensus 49 ~~gi~~tIte~kh~~~~-gkv~vLdigtGTGLLSmMAvrag---aD~vtA~EvfkPM~d~arkI~~kng 113 (636)
T KOG1501|consen 49 RLGIEKTITEPKHVLDI-GKVFVLDIGTGTGLLSMMAVRAG---ADSVTACEVFKPMVDLARKIMHKNG 113 (636)
T ss_pred HHHHHHHhcccceeccC-ceEEEEEccCCccHHHHHHHHhc---CCeEEeehhhchHHHHHHHHHhcCC
Confidence 44566677777776532 33589999999998776554432 3579999999999999999987643
No 255
>PHA01634 hypothetical protein
Probab=87.88 E-value=1.1 Score=39.37 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=37.5
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+...++|+|+|++-|..++.+.- .....|+++++++.+.+..++.++.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred eecCCEEEEecCCccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhh
Confidence 45678999999999976654432 1357899999999999999887654
No 256
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=87.42 E-value=1.5 Score=41.12 Aligned_cols=43 Identities=23% Similarity=0.104 Sum_probs=29.2
Q ss_pred HHHHHCCCCC-CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeC
Q 012511 83 EVRRRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEP 126 (462)
Q Consensus 83 eL~~rlp~~~-p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~ 126 (462)
||..+..-++ ..+|||+||-||+.+-.+.+.-. ....|.+||+
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~-p~g~v~gVDl 102 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVN-PNGMVLGVDL 102 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhC-CCceEEEEee
Confidence 4444443333 47999999999998876665442 3467888884
No 257
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=87.32 E-value=1.4 Score=42.12 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHC----CCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 77 CYRVLCEVRRRL----PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 77 ~~~vL~eL~~rl----p~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
-.++-.||..|. +...|.++-|=.||.|..+-.+.-..++.+..+.+-|++++++++|++++.
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 345566666654 445678999999999977655544445567899999999999999998874
No 258
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.22 E-value=0.65 Score=41.74 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHH
Q 012511 71 PAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 71 p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ 136 (462)
|++-.++..||+-+.. .+..+.+|+|+|.|....+++.. .....++++.++=+..+++-
T Consensus 55 pAtteQv~nVLSll~~----n~~GklvDlGSGDGRiVlaaar~---g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRG----NPKGKLVDLGSGDGRIVLAAARC---GLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CccHHHHHHHHHHccC----CCCCcEEeccCCCceeehhhhhh---CCCcCCceeccHHHHHHHHH
Confidence 4555566666665443 23479999999999988887763 24567999999998887764
No 259
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.12 E-value=7.3 Score=37.41 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=69.7
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccC--CCCCcccEEE
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSEREHDLVI 171 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~--~~~~~fDLVi 171 (462)
.+|.|+||--|.....+..-- ....++++|.++..++.|...+...+..+.+... ....++ ..+..+|.|+
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~--~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr-----~~dgl~~l~~~d~~d~iv 90 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNN--PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVR-----LGDGLAVLELEDEIDVIV 90 (226)
T ss_pred CceeeccCchhHhHHHHHhcC--CcceEEEeecccCHHHHHHHHHHhcCCcceEEEe-----ccCCccccCccCCcCEEE
Confidence 459999999998877766532 3578999999999999999988876655554322 111232 1234688887
Q ss_pred ecccccCCCCHHHHHHHHHHHHhcCCC--EEEEEecCCCCchHHHHHHHHHHH
Q 012511 172 ASYVLGEVPSLQDRITIVRQLWDLTRD--VLVLVEPGTPQGSSIISQMRSHIL 222 (462)
Q Consensus 172 as~vL~el~~~~~r~~~i~~Lw~~~gG--~LVlVEpGtp~Gf~~I~~aR~~lL 222 (462)
.+.+ .......++.+..+.-.+ .||| -|.-. .-.+|+++.
T Consensus 91 IAGM-----GG~lI~~ILee~~~~l~~~~rlIL----QPn~~--~~~LR~~L~ 132 (226)
T COG2384 91 IAGM-----GGTLIREILEEGKEKLKGVERLIL----QPNIH--TYELREWLS 132 (226)
T ss_pred EeCC-----cHHHHHHHHHHhhhhhcCcceEEE----CCCCC--HHHHHHHHH
Confidence 6654 223334455555444333 5665 33322 346788875
No 260
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.91 E-value=9.9 Score=38.98 Aligned_cols=45 Identities=22% Similarity=0.167 Sum_probs=37.1
Q ss_pred CCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 93 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 93 p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
+.+|+=+|||| |.++.+++...+ ..+++++|.+++-+++|++...
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~G--a~~Viv~d~~~~Rl~~A~~~~g 214 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLG--ASVVIVVDRSPERLELAKEAGG 214 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCHHHHHHHHHhCC
Confidence 34999999997 777777777765 4689999999999999998543
No 261
>PRK10742 putative methyltransferase; Provisional
Probab=86.89 E-value=2.5 Score=41.36 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=34.7
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
+|||+=+|.|.-++.++.. ..+|++||.|+.+..+.+..++.
T Consensus 91 ~VLD~TAGlG~Da~~las~----G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHH
Confidence 8999999999988877763 44699999999988877766654
No 262
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=86.71 E-value=1.2 Score=46.02 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=70.3
Q ss_pred CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC--CCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~--~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
+.+..++|+|||-|.....+... ....+++++.|+.-+..+........ +...+ -..++. ..++++..||
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f---~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~----~~~~~~-~~~fedn~fd 180 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF---KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNF----VVADFG-KMPFEDNTFD 180 (364)
T ss_pred cccccccccCcCcCchhHHHHHh---ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcce----ehhhhh-cCCCCccccC
Confidence 34457999999999877777654 34679999999977666655443211 11000 011222 2356789999
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 204 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVE 204 (462)
.+-+..+.-+.++...+.+-+-... +|||..+.-|
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~-kpGG~~i~~e 215 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVL-KPGGLFIVKE 215 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhccc-CCCceEEeHH
Confidence 9999999999998887655444443 3899988733
No 263
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.17 E-value=7.4 Score=36.97 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=42.7
Q ss_pred CCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC-Cce
Q 012511 88 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLI 147 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~-~~i 147 (462)
+|-....+||=+|+-+||..-.+.+.-+ ...+.+|+.|+.+....-.+++.-.|+ |.+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~--~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL 130 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVG--EGRIYAVEFSPRPMRELLDVAEKRPNIIPIL 130 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccC--CCcEEEEEecchhHHHHHHHHHhCCCceeee
Confidence 3444568999999999999989998876 357999999998765554555444444 443
No 264
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=85.57 E-value=2.7 Score=39.23 Aligned_cols=41 Identities=22% Similarity=0.107 Sum_probs=32.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHH
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ 136 (462)
.+..|||.=||+||.+.|+.. ...+++++|++++..++|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~----l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEE----LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHH----TT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHH----cCCeEEEEeCCHHHHHHhcC
Confidence 457999999999999988887 35689999999999998864
No 265
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=84.30 E-value=3.4 Score=41.18 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
...+|||+.+|||.=+.++++.+.+ ...++++|.+..-+...+..++..+
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~-~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGN-KGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTT-TSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccccccccccCCCCceeeeeecccc-hhHHHHhccCHHHHHHHHHHHHhcC
Confidence 3468999999999888888888763 5799999999999888888777654
No 266
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=83.90 E-value=9.8 Score=37.78 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=66.3
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCceecchhHhhhhh-ccCCCCCccc
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNK-DISKSEREHD 168 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i~~~~~~~~l~~-~l~~~~~~fD 168 (462)
+.+||+-|.|.|.++.+++...+ ...+++-.|.-...-+.|.+-++.-. +..+++. ++.. .+......+|
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~-ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hr-----DVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVA-PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHR-----DVCGSGFLIKSLKAD 179 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhC-cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEe-----ecccCCccccccccc
Confidence 46999999999999999888765 45788999997766666665554321 2222221 2211 1111234556
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpG 206 (462)
.| +..||.+...+-....+++..||+|+-+-|-
T Consensus 180 aV-----FLDlPaPw~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 180 AV-----FLDLPAPWEAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred eE-----EEcCCChhhhhhhhHHHhhhcCceEEeccHH
Confidence 54 4667778777766666777678899887654
No 267
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=83.85 E-value=0.66 Score=38.54 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=28.6
Q ss_pred EEECCchhHHHHHHHHhCCCCc-cEEEEEeCCHH---HHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEe
Q 012511 97 LDFGAGTGSAFWALREVWPRSL-EKVNLVEPSQS---MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 172 (462)
Q Consensus 97 LDvG~G~G~~~~al~~~~~~~~-~~v~~VD~S~~---ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVia 172 (462)
|++|+..|..+..+++.++... .+++++|..+. ..+..++.- -..++.++... +...+. .++ ..++|+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~-~~~~~~~~~g~-s~~~l~-~~~--~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAG-LSDRVEFIQGD-SPDFLP-SLP--DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GG-G-BTEEEEES--THHHHH-HHH--H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcC-CCCeEEEEEcC-cHHHHH-HcC--CCCEEEEEE
Confidence 6899888866655555454322 37999999994 333333210 01122233221 111121 121 468999886
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--CCCEEEE
Q 012511 173 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 202 (462)
Q Consensus 173 s~vL~el~~~~~r~~~i~~Lw~~--~gG~LVl 202 (462)
-- .| +.+.....+..++.. +||.+|+
T Consensus 76 Dg--~H--~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 76 DG--DH--SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ES-------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CC--CC--CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 42 11 134455566777765 5666654
No 268
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.78 E-value=5.6 Score=39.96 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=53.0
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC-CCCceecc
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSY 150 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~-~~~~i~~~ 150 (462)
+|.|+..-+..-.....+|.=-|.|.-+.++.+.++ ...+++++|..+.+++.|++++..+. .+.+++.+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~-~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~ 81 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLP-DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGN 81 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCC-CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCc
Confidence 455555554333347899999999988999998887 46789999999999999999987644 45556544
No 269
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.45 E-value=13 Score=40.31 Aligned_cols=62 Identities=26% Similarity=0.268 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHCC-------CCCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 73 VYSACYRVLCEVRRRLP-------GFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 73 ~Ya~~~~vL~eL~~rlp-------~~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
.|.++......+.+-++ ...+.+||=+|||+ |..+..++..++ .+|+++|.+++-++.++.+
T Consensus 138 Gy~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 138 GYRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred HHHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHc
Confidence 35555544444433222 23578999999996 667777777776 2699999999999998874
No 270
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=83.45 E-value=8.4 Score=39.51 Aligned_cols=125 Identities=14% Similarity=0.031 Sum_probs=74.1
Q ss_pred HhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCc
Q 012511 67 ASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL 146 (462)
Q Consensus 67 a~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~ 146 (462)
+++.|.+..--.+++..+. .+.+|||.=||-|.++..++.. + ..+|+++|+|+...+..++.++-..-...
T Consensus 169 v~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~-g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~ 239 (341)
T COG2520 169 VYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKK-G--RPKVYAIDINPDAVEYLKENIRLNKVEGR 239 (341)
T ss_pred eEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhc-C--CceEEEEecCHHHHHHHHHHHHhcCccce
Confidence 4555666555555554332 2579999999999988887763 2 23499999999999999988753321111
Q ss_pred eecchhHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 012511 147 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 208 (462)
Q Consensus 147 i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp 208 (462)
+... ..+... +......+|-||+++.-.-..-... .+..+. .+|.+..-+...-
T Consensus 240 v~~i--~gD~re-v~~~~~~aDrIim~~p~~a~~fl~~---A~~~~k--~~g~iHyy~~~~e 293 (341)
T COG2520 240 VEPI--LGDARE-VAPELGVADRIIMGLPKSAHEFLPL---ALELLK--DGGIIHYYEFVPE 293 (341)
T ss_pred eeEE--eccHHH-hhhccccCCEEEeCCCCcchhhHHH---HHHHhh--cCcEEEEEeccch
Confidence 1100 111211 1222267999998876532211111 233333 3899988876553
No 271
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.92 E-value=3 Score=40.45 Aligned_cols=126 Identities=16% Similarity=0.149 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecch
Q 012511 72 AVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYN 151 (462)
Q Consensus 72 ~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~ 151 (462)
..+-.+..+|.+..- +.+...+||+|+-||.++-.+.+. ....|++||..-.-+.- . ++....+.... ..
T Consensus 62 RG~~KL~~ale~F~l---~~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~--k-LR~d~rV~~~E-~t 131 (245)
T COG1189 62 RGGLKLEKALEEFEL---DVKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHW--K-LRNDPRVIVLE-RT 131 (245)
T ss_pred cHHHHHHHHHHhcCc---CCCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCH--h-HhcCCcEEEEe-cC
Confidence 344455556665442 346689999999999998877762 35789999987642221 1 12211111110 01
Q ss_pred hHhhhhhccCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchH
Q 012511 152 SIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 152 ~~~~l~~~l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~ 212 (462)
+...+.. ....+..|+|++--++-.+ ...+..+..+++..+-.+.+|-|---.|-+
T Consensus 132 N~r~l~~--~~~~~~~d~~v~DvSFISL---~~iLp~l~~l~~~~~~~v~LvKPQFEagr~ 187 (245)
T COG1189 132 NVRYLTP--EDFTEKPDLIVIDVSFISL---KLILPALLLLLKDGGDLVLLVKPQFEAGRE 187 (245)
T ss_pred ChhhCCH--HHcccCCCeEEEEeehhhH---HHHHHHHHHhcCCCceEEEEecchhhhhhh
Confidence 1111111 0112367899887655444 344555666665434566777775544433
No 272
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=82.08 E-value=1.2 Score=37.80 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=27.9
Q ss_pred ccCHHHHHHHHHhcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHH
Q 012511 56 KYRDDETIAYVASRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALRE 112 (462)
Q Consensus 56 ~y~~~e~~AYla~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~ 112 (462)
.|-+....||+...+-..|.. .++....|+|||.|....-++.
T Consensus 36 VfEDlaIAAyLi~LW~~~~~~--------------~~~~~FVDlGCGNGLLV~IL~~ 78 (112)
T PF07757_consen 36 VFEDLAIAAYLIELWRDMYGE--------------QKFQGFVDLGCGNGLLVYILNS 78 (112)
T ss_pred HHHHHHHHHHHHHHHhcccCC--------------CCCCceEEccCCchHHHHHHHh
Confidence 344555566665544333322 2456899999999998887775
No 273
>PRK11524 putative methyltransferase; Provisional
Probab=82.01 E-value=4.7 Score=40.09 Aligned_cols=56 Identities=18% Similarity=-0.005 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
++..+.+.. ...+..|||-=+|+||.+.|+.. ...+++|+|++++..+.|+..+..
T Consensus 197 L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~----lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKA----SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 344444332 34567999999999998888776 356899999999999999988754
No 274
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=80.91 E-value=14 Score=39.38 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=64.8
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccEEEec
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 173 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias 173 (462)
.++|-+|||.-.....+.+ .....++.+|.|+-.++....... ...+..... ..+.. .+.++..+||+||.-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~---~G~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~--~~d~~-~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYK---NGFEDITNIDSSSVVVAAMQVRNA--KERPEMQMV--EMDMD-QLVFEDESFDIVIDK 121 (482)
T ss_pred ceeEeecCCCCHHHHHHHh---cCCCCceeccccHHHHHHHHhccc--cCCcceEEE--Eecch-hccCCCcceeEEEec
Confidence 3899999998876665554 245789999999988776654321 222222110 01121 244678899999999
Q ss_pred ccccCCCCHHHH----------HHHHHHHHhcCCCEEEEEecC
Q 012511 174 YVLGEVPSLQDR----------ITIVRQLWDLTRDVLVLVEPG 206 (462)
Q Consensus 174 ~vL~el~~~~~r----------~~~i~~Lw~~~gG~LVlVEpG 206 (462)
.+|..+-.++.+ +.-+.++++ ++|..+.|--+
T Consensus 122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~-~~gk~~svtl~ 163 (482)
T KOG2352|consen 122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLA-PGGKYISVTLV 163 (482)
T ss_pred CccccccCCchhhhhhHHhhHHHhhHHHHhc-cCCEEEEEEee
Confidence 999888644322 234455554 58876666553
No 275
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=78.36 E-value=8.7 Score=38.88 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=37.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
.+..++|.=.|.|.-+.++.+.++. .+++++|..+.+++.|++.+...
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~--~~li~~DrD~~a~~~a~~~l~~~ 67 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPN--GRLIGIDRDPEALERAKERLKKF 67 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT---EEEEEES-HHHHHHHHCCTCCC
T ss_pred CCceEEeecCCcHHHHHHHHHhCCC--CeEEEecCCHHHHHHHHHHHhhc
Confidence 4468999999988889999988874 79999999999999999888755
No 276
>KOG2730 consensus Methylase [General function prediction only]
Probab=77.17 E-value=3.5 Score=39.59 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=36.3
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 142 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~ 142 (462)
.+..|+|.=||.|..+...+...+ .|++||+++.-+..|+..++-++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~----~VisIdiDPikIa~AkhNaeiYG 140 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP----YVIAIDIDPVKIACARHNAEVYG 140 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC----eEEEEeccHHHHHHHhccceeec
Confidence 456899988887766666655443 68999999999999998887543
No 277
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=76.94 E-value=24 Score=34.01 Aligned_cols=101 Identities=12% Similarity=0.176 Sum_probs=58.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-CCCCceecchhHhhhhhccCCCCCcccEE
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKDISKSEREHDLV 170 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-~~~~~i~~~~~~~~l~~~l~~~~~~fDLV 170 (462)
++.+||.||.|-|.+.-.+.+.= ..+-+.++..+..++..+.---.. .++..+. ..|++....+ .++.||-|
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~---p~~H~IiE~hp~V~krmr~~gw~ek~nViil~--g~WeDvl~~L--~d~~FDGI 173 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAP---PDEHWIIEAHPDVLKRMRDWGWREKENVIILE--GRWEDVLNTL--PDKHFDGI 173 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcC---CcceEEEecCHHHHHHHHhcccccccceEEEe--cchHhhhccc--cccCccee
Confidence 56899999999998776666532 345677999999887766532211 2332222 3355554445 35679988
Q ss_pred EecccccCCCCHHHHHHHHH---HHHhcCCCEEEEE
Q 012511 171 IASYVLGEVPSLQDRITIVR---QLWDLTRDVLVLV 203 (462)
Q Consensus 171 ias~vL~el~~~~~r~~~i~---~Lw~~~gG~LVlV 203 (462)
.-- +..++ .++...+.+ .|++ |+|++-..
T Consensus 174 ~yD-Ty~e~--yEdl~~~hqh~~rLLk-P~gv~Syf 205 (271)
T KOG1709|consen 174 YYD-TYSEL--YEDLRHFHQHVVRLLK-PEGVFSYF 205 (271)
T ss_pred Eee-chhhH--HHHHHHHHHHHhhhcC-CCceEEEe
Confidence 643 22232 233333333 3443 78887653
No 278
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=76.03 E-value=8.3 Score=38.20 Aligned_cols=73 Identities=22% Similarity=0.229 Sum_probs=47.8
Q ss_pred eEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCC-CCcccEEEec
Q 012511 95 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKS-EREHDLVIAS 173 (462)
Q Consensus 95 rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~-~~~fDLVias 173 (462)
+|||+-||.|.+..++... ...-+.++|.++..++..+.+.... .+. .++..-.... ...+|+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~---G~~~v~a~e~~~~a~~~~~~N~~~~----~~~-----~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA---GFEIVAANEIDKSAAETYEANFPNK----LIE-----GDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc---CCEEEEEEeCCHHHHHHHHHhCCCC----Ccc-----CccccCchhhcCCCCCEEEeC
Confidence 7999999999988887763 2456889999999998887765432 111 1121111111 3469999998
Q ss_pred ccccCC
Q 012511 174 YVLGEV 179 (462)
Q Consensus 174 ~vL~el 179 (462)
.-...+
T Consensus 70 pPCq~f 75 (275)
T cd00315 70 FPCQPF 75 (275)
T ss_pred CCChhh
Confidence 755444
No 279
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=73.01 E-value=2.8 Score=39.78 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=34.5
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
..+.|||||-|.++..++..||+ .-+.|.++-...-+..++.++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPd--tLiLGmEIR~KVsdYVk~RI~ 105 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPD--TLILGMEIRDKVSDYVKERIQ 105 (249)
T ss_pred ceEEeeccCccchhhhccccCcc--ceeeeehhhHHHHHHHHHHHH
Confidence 57899999999999999999986 347788877766666555543
No 280
>PRK13699 putative methylase; Provisional
Probab=72.49 E-value=14 Score=35.68 Aligned_cols=45 Identities=33% Similarity=0.264 Sum_probs=38.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 140 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~ 140 (462)
.+..|||-=||+|+.+.|+.. ...+++++|++++..+.|.+.++.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~----~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQ----SGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHH
Confidence 457999999999999888876 346899999999999999877754
No 281
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=71.09 E-value=26 Score=35.52 Aligned_cols=121 Identities=18% Similarity=0.267 Sum_probs=71.7
Q ss_pred HHHHHHHHCCC----CCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcC--CCC----CCceec
Q 012511 80 VLCEVRRRLPG----FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKD----LPLIHS 149 (462)
Q Consensus 80 vL~eL~~rlp~----~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~--~~~----~~~i~~ 149 (462)
++.+|..-.|. -...+||-=|||.|.++.-++... -.+.|=+.|--|+=...-++.. +.+ .|++|.
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G----~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~ 209 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG----FKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQ 209 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc----ccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeec
Confidence 56666665553 134689999999999998888743 3466668888888666655521 111 244443
Q ss_pred chhH-------------------------------hhhhhc--cCCCCCcccEEEecccccCCCCHHHHHHHHHHHHhcC
Q 012511 150 YNSI-------------------------------QALNKD--ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT 196 (462)
Q Consensus 150 ~~~~-------------------------------~~l~~~--l~~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~ 196 (462)
+... .++.+- .+...+.||.|+..+.+..-.+.-+-+..|.++++ +
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk-~ 288 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILK-P 288 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhcc-C
Confidence 2111 011000 01123469999888766554444444556666665 7
Q ss_pred CCEEEEEec
Q 012511 197 RDVLVLVEP 205 (462)
Q Consensus 197 gG~LVlVEp 205 (462)
||+.|=+-|
T Consensus 289 GGvWiNlGP 297 (369)
T KOG2798|consen 289 GGVWINLGP 297 (369)
T ss_pred CcEEEeccc
Confidence 999887654
No 282
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=69.88 E-value=22 Score=39.79 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=27.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhCC-------C---CccEEEEEeCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWP-------R---SLEKVNLVEPS 127 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~-------~---~~~~v~~VD~S 127 (462)
+.-+|||+|-|+|..++++.+.|. . ...+++.+|.-
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~ 102 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKF 102 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECC
Confidence 347999999999998888887771 1 13588999963
No 283
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=69.81 E-value=10 Score=33.23 Aligned_cols=104 Identities=18% Similarity=0.296 Sum_probs=53.2
Q ss_pred CCCCCCCeEEEECCch-hHHH-HHHHHhCCCCccEEEEEeCCHHHH-HHHHHhhcCCCCCCceecchhHhhhhhccCCCC
Q 012511 88 LPGFSPAKVLDFGAGT-GSAF-WALREVWPRSLEKVNLVEPSQSMQ-RAGQSLMQGPKDLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~-G~~~-~al~~~~~~~~~~v~~VD~S~~ml-~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
+++++..+||=+|+|. |..+ .++.. . ...+++.+..+.+-. ++++.. .. ..+..+. +.++.. ..
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~-~--g~~~i~i~nRt~~ra~~l~~~~-~~-~~~~~~~----~~~~~~----~~ 73 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAA-L--GAKEITIVNRTPERAEALAEEF-GG-VNIEAIP----LEDLEE----AL 73 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHH-T--TSSEEEEEESSHHHHHHHHHHH-TG-CSEEEEE----GGGHCH----HH
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHH-c--CCCEEEEEECCHHHHHHHHHHc-Cc-cccceee----HHHHHH----HH
Confidence 3566789999999983 3333 23333 2 356799999997633 333332 11 1111111 112211 12
Q ss_pred CcccEEEecccccCCCCHHHHHHHHHHHHhcCCCEE-EEEecCCCCch
Q 012511 165 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVL-VLVEPGTPQGS 211 (462)
Q Consensus 165 ~~fDLVias~vL~el~~~~~r~~~i~~Lw~~~gG~L-VlVEpGtp~Gf 211 (462)
..+|+||.+-...+..-. ...++...-.+ +++|-+.|+.-
T Consensus 74 ~~~DivI~aT~~~~~~i~-------~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 74 QEADIVINATPSGMPIIT-------EEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp HTESEEEE-SSTTSTSST-------HHHHTTTCHHCSEEEES-SS-SB
T ss_pred hhCCeEEEecCCCCcccC-------HHHHHHHHhhhhceeccccCCCC
Confidence 479999988666544311 22333211115 78888888654
No 284
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=69.53 E-value=11 Score=36.60 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=33.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHH
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ 136 (462)
++.+|||...|-|..+..+.+. ....|+-|+.++..+++|+.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~l 175 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKL 175 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeecc
Confidence 4579999999999777766652 23489999999999988763
No 285
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.09 E-value=33 Score=35.25 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=55.5
Q ss_pred CCCeEEEECCchhHH--HHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccE
Q 012511 92 SPAKVLDFGAGTGSA--FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~--~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+..+|+=+|+| |.+ +..++..++ .+|+++|.|++=++.|+++-.+. .+... -.+. .....+.||+
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~lGAd~----~i~~~--~~~~---~~~~~~~~d~ 232 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKLGADH----VINSS--DSDA---LEAVKEIADA 232 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHhCCcE----EEEcC--Cchh---hHHhHhhCcE
Confidence 35799999998 654 445666553 69999999999999998874431 11100 0011 1111224999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEec
Q 012511 170 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 170 Vias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEp 205 (462)
||..-. .+ .....++.| + .+|.+|+|--
T Consensus 233 ii~tv~-~~-----~~~~~l~~l-~-~~G~~v~vG~ 260 (339)
T COG1064 233 IIDTVG-PA-----TLEPSLKAL-R-RGGTLVLVGL 260 (339)
T ss_pred EEECCC-hh-----hHHHHHHHH-h-cCCEEEEECC
Confidence 987654 22 222234433 3 4999999853
No 286
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=68.86 E-value=67 Score=31.57 Aligned_cols=128 Identities=11% Similarity=0.061 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-----CCCCceec
Q 012511 75 SACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-----KDLPLIHS 149 (462)
Q Consensus 75 a~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-----~~~~~i~~ 149 (462)
+.-.+.+++...+.....+..|+.+|||-=|-.+-+. |+. ...++=||.-. +++.-++++... .+...+..
T Consensus 64 ~~Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~--~~~-~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~ 139 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLP--WPD-GTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPV 139 (260)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcC--CCC-CCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEecc
Confidence 3334456555444322235679999999887777653 442 34566666544 455545555532 12222222
Q ss_pred chhHhhhhhccC---CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEEEecCCC
Q 012511 150 YNSIQALNKDIS---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTP 208 (462)
Q Consensus 150 ~~~~~~l~~~l~---~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVlVEpGtp 208 (462)
... .++...+. +.....-++|+--++.+|+ .++...+++.+-+. +.|..|+.|.-.+
T Consensus 140 Dl~-~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 140 DLR-QDWPAALAAAGFDPTAPTAWLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred Cch-hhHHHHHHhCCCCCCCCeeeeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 211 22222221 2233456899999999996 77777788888665 2566666776555
No 287
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=67.74 E-value=1.1e+02 Score=30.75 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=57.1
Q ss_pred HHHCCCCCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHH-HHHHHHhhcCCCCCCceecchhHhhhhhccCC
Q 012511 85 RRRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSM-QRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 162 (462)
Q Consensus 85 ~~rlp~~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~m-l~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~ 162 (462)
...++.....+|+=+|+|. |..+....... ...++++++.+++- .++++.+ .. ..+. ..++...+
T Consensus 170 ~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~--g~~~V~v~~r~~~ra~~la~~~-g~----~~~~----~~~~~~~l-- 236 (311)
T cd05213 170 EKIFGNLKGKKVLVIGAGEMGELAAKHLAAK--GVAEITIANRTYERAEELAKEL-GG----NAVP----LDELLELL-- 236 (311)
T ss_pred HHHhCCccCCEEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHc-CC----eEEe----HHHHHHHH--
Confidence 3333445678999999985 43332222222 24689999999764 3455442 11 1111 11122112
Q ss_pred CCCcccEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEEEecCCCCch
Q 012511 163 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 163 ~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVlVEpGtp~Gf 211 (462)
..+|+||.+-.-.+. ...+..+.+. .++..++|+-+.|+..
T Consensus 237 --~~aDvVi~at~~~~~------~~~~~~~~~~~~~~~~~viDlavPrdi 278 (311)
T cd05213 237 --NEADVVISATGAPHY------AKIVERAMKKRSGKPRLIVDLAVPRDI 278 (311)
T ss_pred --hcCCEEEECCCCCch------HHHHHHHHhhCCCCCeEEEEeCCCCCC
Confidence 357999987543332 2233444332 3466788899888765
No 288
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=67.06 E-value=95 Score=29.16 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=39.0
Q ss_pred CchhHHHHHHHHHHHHHHCCCCCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 70 MPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 70 ~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
++..|...+..+..+.. ...+.+||-+|+|+ |..+..++...+ .++++++.++...+.++.+
T Consensus 115 ~~~~~~~a~~~l~~~~~---~~~~~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 115 LPEPLATAYHALRRAGV---LKPGDTVLVLGAGGVGLLAAQLAKAAG---ARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred hcCHHHHHHHHHHhccC---CCCCCEEEEECCCHHHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHHh
Confidence 34445555555544432 12457999999986 444444555443 5899999999887777553
No 289
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=66.35 E-value=15 Score=36.30 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=34.4
Q ss_pred HHHHHHHHCCCC-CCCeEEEECCchhHHHHHHHHhCCC---CccEEEEEeCCHH
Q 012511 80 VLCEVRRRLPGF-SPAKVLDFGAGTGSAFWALREVWPR---SLEKVNLVEPSQS 129 (462)
Q Consensus 80 vL~eL~~rlp~~-~p~rVLDvG~G~G~~~~al~~~~~~---~~~~v~~VD~S~~ 129 (462)
++..|.+. +.+ +...++|||||-|.++..++..++. ....+++||....
T Consensus 6 li~~l~~~-~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 6 LIGNLEQR-GLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHc-CCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 44444443 222 3468999999999999888887743 3468999998653
No 290
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=64.16 E-value=30 Score=32.93 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=28.3
Q ss_pred cCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCch-hHHHHH--HHHhCCCCccEEEEEeCCHHH
Q 012511 69 RMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGT-GSAFWA--LREVWPRSLEKVNLVEPSQSM 130 (462)
Q Consensus 69 r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~-G~~~~a--l~~~~~~~~~~v~~VD~S~~m 130 (462)
.+|....+...+|-+++ |..|+++|.=. |++.|. +.+.++ ...+|++||+...-
T Consensus 16 q~P~Dm~~~qeli~~~k-------Pd~IIE~Gi~~GGSli~~A~ml~~~~-~~~~VigiDIdir~ 72 (206)
T PF04989_consen 16 QYPQDMVAYQELIWELK-------PDLIIETGIAHGGSLIFWASMLELLG-GKGKVIGIDIDIRP 72 (206)
T ss_dssp S-HHHHHHHHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT----EEEEEES-GTT
T ss_pred cCHHHHHHHHHHHHHhC-------CCeEEEEecCCCchHHHHHHHHHHhC-CCceEEEEeCCcch
Confidence 34555555555666654 68999999754 444443 344553 35799999996443
No 291
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.42 E-value=80 Score=32.07 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=69.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCC---CC-------------ceec--ch---
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LP-------------LIHS--YN--- 151 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~---~~-------------~i~~--~~--- 151 (462)
...|+-+|||.-+..|.+.....-....++=||.++-..... .+...... +. .++. +.
T Consensus 88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi-~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g 166 (335)
T KOG2918|consen 88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI-SIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIG 166 (335)
T ss_pred ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH-hhcccCchhhhhhccccccccccCcceeccCceeeec
Confidence 368999999999999988876522356788888887765554 11111100 00 0000 00
Q ss_pred -hH---hhhhhccC---CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEEEecCCCC-chHHH
Q 012511 152 -SI---QALNKDIS---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQ-GSSII 214 (462)
Q Consensus 152 -~~---~~l~~~l~---~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVlVEpGtp~-Gf~~I 214 (462)
.+ ..+...+. ....-.-|+|+-=+|-+++ +++-..+|+.+.++ +.+.+|..|+-.|. -|..|
T Consensus 167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~-pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~v 237 (335)
T KOG2918|consen 167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYME-PEESANLIKWAASKFENAHFVNYEQINPNDRFGKV 237 (335)
T ss_pred cchhhhHHHHHHHHhccCCcCcceeehhhhhheecc-HHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHH
Confidence 00 01111111 0122334667777788885 77777888888776 78999999985533 35433
No 292
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=61.73 E-value=27 Score=37.70 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=36.7
Q ss_pred CeEEEECCchhHHHHHHHHhCCCC--ccEEEEEeCCHHHHHHHHHhh
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRS--LEKVNLVEPSQSMQRAGQSLM 138 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~--~~~v~~VD~S~~ml~~Ak~ll 138 (462)
.+|+|--||+|..+..+.+..... ...++|.|.++.+..+|+..+
T Consensus 188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~ 234 (489)
T COG0286 188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNL 234 (489)
T ss_pred CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHH
Confidence 589999999999888877776432 256899999999999988654
No 293
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=59.25 E-value=1.5e+02 Score=30.89 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=67.0
Q ss_pred CCCCCeEEEECCchhHH----HHHHHHhCC-CCccEEEEEeC----CHHHHHHHHHhhcCCC---CCCceec---chhHh
Q 012511 90 GFSPAKVLDFGAGTGSA----FWALREVWP-RSLEKVNLVEP----SQSMQRAGQSLMQGPK---DLPLIHS---YNSIQ 154 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~----~~al~~~~~-~~~~~v~~VD~----S~~ml~~Ak~ll~~~~---~~~~i~~---~~~~~ 154 (462)
+.+..+|+|+|.|.|.- +-+++..-+ ....++|+|+. +..-++.+...+.... ++|+.-. ..++.
T Consensus 108 g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e 187 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLE 187 (374)
T ss_pred cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchh
Confidence 33557999999999852 223332111 13579999999 6655555544443321 3443211 01122
Q ss_pred hhhh-ccCCCCCcccEEEecccccCCCCHH-----HHHHHHHHHHhcCCCEEEEEecCC-CCchHHHHHHHHHHH
Q 012511 155 ALNK-DISKSEREHDLVIASYVLGEVPSLQ-----DRITIVRQLWDLTRDVLVLVEPGT-PQGSSIISQMRSHIL 222 (462)
Q Consensus 155 ~l~~-~l~~~~~~fDLVias~vL~el~~~~-----~r~~~i~~Lw~~~gG~LVlVEpGt-p~Gf~~I~~aR~~lL 222 (462)
++.. .+....+..=.|-+.+.||++.+.. .+..+++.+-+..-..+|++|... ..+...+.+.++.+-
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal~ 262 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLERFREALH 262 (374)
T ss_pred hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHHHHHHHHH
Confidence 2211 1111122222233567788886321 344566655554335777777643 334455666666643
No 294
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=58.74 E-value=47 Score=33.51 Aligned_cols=124 Identities=18% Similarity=0.171 Sum_probs=75.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCC---CCCce--ecchhHhhhhhccCCCCCc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLI--HSYNSIQALNKDISKSERE 166 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~---~~~~i--~~~~~~~~l~~~l~~~~~~ 166 (462)
.|++||=||-|-|......... .+++.+..+|+....++..++.+.... .-+.+ +.-+-...+. .. ..++
T Consensus 121 npkkvlVVgggDggvlrevikH--~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~-~~--~~~~ 195 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH--KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLE-DL--KENP 195 (337)
T ss_pred CCCeEEEEecCCccceeeeecc--ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHH-Hh--ccCC
Confidence 5799999999999877654443 367899999999999998887765421 11111 1111111111 11 3678
Q ss_pred ccEEEecccccCCCCHHHH----HHHHHHHHhcCCCEEEEEecCCCCchHHHHHHHHHH
Q 012511 167 HDLVIASYVLGEVPSLQDR----ITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 221 (462)
Q Consensus 167 fDLVias~vL~el~~~~~r----~~~i~~Lw~~~gG~LVlVEpGtp~Gf~~I~~aR~~l 221 (462)
||+||.--.=-..+....- ...+...++ ++|++++++-.-..--..|.+.|+.-
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk-~dgv~~~q~ec~wl~~~~i~e~r~~~ 253 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALK-GDGVVCTQGECMWLHLDYIKEGRSFC 253 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhC-CCcEEEEecceehHHHHHHHHHHHhH
Confidence 9999864432222211111 123333332 79999999876666667777777763
No 295
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=58.55 E-value=46 Score=32.48 Aligned_cols=78 Identities=10% Similarity=0.152 Sum_probs=41.3
Q ss_pred CCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCC-CCCcc
Q 012511 89 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK-SEREH 167 (462)
Q Consensus 89 p~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~-~~~~f 167 (462)
++..+++||=+|=+-.+.+-.+.... ..+++++|+.+.+++.-+..++..+ ++ +... ..++...+|. -.++|
T Consensus 41 gdL~gk~il~lGDDDLtSlA~al~~~---~~~I~VvDiDeRll~fI~~~a~~~g-l~-i~~~--~~DlR~~LP~~~~~~f 113 (243)
T PF01861_consen 41 GDLEGKRILFLGDDDLTSLALALTGL---PKRITVVDIDERLLDFINRVAEEEG-LP-IEAV--HYDLRDPLPEELRGKF 113 (243)
T ss_dssp T-STT-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHHHT----EEEE-----TTS---TTTSS-B
T ss_pred CcccCCEEEEEcCCcHHHHHHHhhCC---CCeEEEEEcCHHHHHHHHHHHHHcC-Cc-eEEE--EecccccCCHHHhcCC
Confidence 45567899999987665443333222 4689999999999999887765432 23 2211 1245555653 36899
Q ss_pred cEEEec
Q 012511 168 DLVIAS 173 (462)
Q Consensus 168 DLVias 173 (462)
|+++.-
T Consensus 114 D~f~TD 119 (243)
T PF01861_consen 114 DVFFTD 119 (243)
T ss_dssp SEEEE-
T ss_pred CEEEeC
Confidence 999873
No 296
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=56.89 E-value=15 Score=36.65 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHH
Q 012511 90 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQ 131 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml 131 (462)
.|..++|||+|||+|.-..-+... ....+...|.|.+.+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~---~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVK---GAVSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhhh---ccceeeeEecchhhe
Confidence 467899999999988543332221 225677778777665
No 297
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=55.33 E-value=1.4e+02 Score=31.69 Aligned_cols=106 Identities=20% Similarity=0.315 Sum_probs=58.8
Q ss_pred HCCCCCCCeEEEECCc-hhHHHH-HHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCC
Q 012511 87 RLPGFSPAKVLDFGAG-TGSAFW-ALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSE 164 (462)
Q Consensus 87 rlp~~~p~rVLDvG~G-~G~~~~-al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~ 164 (462)
.+++....+||=+|+| .|..+. ++.. ....+++.+-.+.+ .|+++.+..... .+ ...++.. .-
T Consensus 172 ~~~~L~~~~vlvIGAGem~~lva~~L~~---~g~~~i~IaNRT~e---rA~~La~~~~~~-~~----~l~el~~----~l 236 (414)
T COG0373 172 IFGSLKDKKVLVIGAGEMGELVAKHLAE---KGVKKITIANRTLE---RAEELAKKLGAE-AV----ALEELLE----AL 236 (414)
T ss_pred HhcccccCeEEEEcccHHHHHHHHHHHh---CCCCEEEEEcCCHH---HHHHHHHHhCCe-ee----cHHHHHH----hh
Confidence 3344567889999999 555433 2333 23567888877754 445554443311 11 1112222 22
Q ss_pred CcccEEEec-ccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchH
Q 012511 165 REHDLVIAS-YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 165 ~~fDLVias-~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~ 212 (462)
..+|+||++ ...+.+=+. ..+...++.... +++|+-+.|+..+
T Consensus 237 ~~~DvVissTsa~~~ii~~----~~ve~a~~~r~~-~livDiavPRdie 280 (414)
T COG0373 237 AEADVVISSTSAPHPIITR----EMVERALKIRKR-LLIVDIAVPRDVE 280 (414)
T ss_pred hhCCEEEEecCCCccccCH----HHHHHHHhcccC-eEEEEecCCCCCC
Confidence 468999976 333444322 245555554344 9999998887653
No 298
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.18 E-value=1.4e+02 Score=28.32 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=60.2
Q ss_pred CCCCCeEEEECCc-hhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCccc
Q 012511 90 GFSPAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 90 ~~~p~rVLDvG~G-~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.+.+.+||=+|+= +|..+-.+.. ...+|+++|+.+.|.. ++.+ ++. +...+-+..+.+|
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls----~~~~vtv~Di~p~~r~----~lp~--~v~----------Fr~~~~~~~G~~D 101 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLS----KADKVTVVDIHPFMRG----FLPN--NVK----------FRNLLKFIRGEVD 101 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhc----ccceEEEecCCHHHHh----cCCC--Ccc----------HhhhcCCCCCcee
Confidence 3567899999975 5665544332 2468999999999853 3332 121 1112334568899
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCch-HHHHHHHHH
Q 012511 169 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS-SIISQMRSH 220 (462)
Q Consensus 169 LVias~vL~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf-~~I~~aR~~ 220 (462)
|||----|..+. ++. |.+..-+++|+=+|. -.+| ..|.+.-+.
T Consensus 102 livDlTGlGG~~-Pe~-------L~~fnp~vfiVEdP~-gn~~D~~I~eyn~T 145 (254)
T COG4017 102 LIVDLTGLGGIE-PEF-------LAKFNPKVFIVEDPK-GNVFDVDIYEYNNT 145 (254)
T ss_pred EEEeccccCCCC-HHH-------HhccCCceEEEECCC-CCCCccchhhcCCH
Confidence 999998898885 442 222234566554443 3333 445444433
No 299
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=54.04 E-value=1.7e+02 Score=30.79 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=55.5
Q ss_pred HHCCCCCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHH-HHHHhhcCCCCCCceecchhHhhhhhccCCC
Q 012511 86 RRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQR-AGQSLMQGPKDLPLIHSYNSIQALNKDISKS 163 (462)
Q Consensus 86 ~rlp~~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~-~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~ 163 (462)
+.++.....+|+=+|+|. |..+....... ...++++++.+.+... .++.+ .. . .+. ..++...+
T Consensus 173 ~~~~~l~~~~VlViGaG~iG~~~a~~L~~~--G~~~V~v~~rs~~ra~~la~~~-g~---~-~i~----~~~l~~~l--- 238 (417)
T TIGR01035 173 RIFGSLKGKKALLIGAGEMGELVAKHLLRK--GVGKILIANRTYERAEDLAKEL-GG---E-AVK----FEDLEEYL--- 238 (417)
T ss_pred HHhCCccCCEEEEECChHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc-CC---e-Eee----HHHHHHHH---
Confidence 334455678999999985 43332222222 2468999999976432 33321 11 0 111 11222111
Q ss_pred CCcccEEEecccc-cCCCCHHHHHHHHHHHHhcCCCEEEEEecCCCCchH
Q 012511 164 EREHDLVIASYVL-GEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 212 (462)
Q Consensus 164 ~~~fDLVias~vL-~el~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf~ 212 (462)
..+|+||++-.- +.+-+. +.+..+.....+.+++++-+.|+...
T Consensus 239 -~~aDvVi~aT~s~~~ii~~----e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 239 -AEADIVISSTGAPHPIVSK----EDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred -hhCCEEEECCCCCCceEcH----HHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 358999987322 222112 23444433222567888888887553
No 300
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=52.79 E-value=31 Score=33.31 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=49.1
Q ss_pred hcCchhHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 68 SRMPAVYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 68 ~r~p~~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
..+..||---.++-..|.+..+.....-|.++|.|||..+.++.+. ...+..+|+.....+.-.+.+.+
T Consensus 26 K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a---~~~RL~vVE~D~RFip~LQ~L~E 94 (326)
T KOG0821|consen 26 KQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNA---DVARLLVVEKDTRFIPGLQMLSE 94 (326)
T ss_pred HHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhc---chhheeeeeeccccChHHHHHhh
Confidence 3455666655666677777766656678999999999999887763 35678888888876665554444
No 301
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=51.86 E-value=1.4e+02 Score=27.90 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=20.7
Q ss_pred CCeEEEECCch-hHHHH-HHHHhCCCCccEEEEEeCC
Q 012511 93 PAKVLDFGAGT-GSAFW-ALREVWPRSLEKVNLVEPS 127 (462)
Q Consensus 93 p~rVLDvG~G~-G~~~~-al~~~~~~~~~~v~~VD~S 127 (462)
..+||=+|||. |..+. .+.. . ...+++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~-~--Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAG-A--GVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-c--CCCeEEEecCC
Confidence 47999999993 43222 2222 2 35689999876
No 302
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=51.62 E-value=34 Score=33.30 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=48.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC----ceecchhHhhhhhccCCCCCcc
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP----LIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~----~i~~~~~~~~l~~~l~~~~~~f 167 (462)
+..++||+|.|.-- +.-+.-+- +-.-+.++.|+++..+..|+.++...+++. .+..-.+...+. .+-...+.|
T Consensus 78 ~~i~~LDIGvGAnC-IYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~-giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANC-IYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFN-GIIGKNERY 154 (292)
T ss_pred CceEEEeeccCccc-ccccccce-eecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccc-cccccccee
Confidence 34689999988431 11111100 013478999999999999998876543321 111111111111 122336789
Q ss_pred cEEEecccccCC
Q 012511 168 DLVIASYVLGEV 179 (462)
Q Consensus 168 DLVias~vL~el 179 (462)
|.++|+--+|+-
T Consensus 155 d~tlCNPPFh~s 166 (292)
T COG3129 155 DATLCNPPFHDS 166 (292)
T ss_pred eeEecCCCcchh
Confidence 999999877764
No 303
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=51.07 E-value=2.8e+02 Score=29.24 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=54.2
Q ss_pred CCCCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHH-HHHHhhcCCCCCCceecchhHhhhhhccCCCCCc
Q 012511 89 PGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQR-AGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 166 (462)
Q Consensus 89 p~~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~-~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~ 166 (462)
++..+.+||=+|+|+ |..+....... ...++++++.+++-.. .++. +. . ..+. ..++...+ ..
T Consensus 178 ~~~~~~~vlViGaG~iG~~~a~~L~~~--G~~~V~v~~r~~~ra~~la~~-~g---~-~~~~----~~~~~~~l----~~ 242 (423)
T PRK00045 178 GDLSGKKVLVIGAGEMGELVAKHLAEK--GVRKITVANRTLERAEELAEE-FG---G-EAIP----LDELPEAL----AE 242 (423)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH-cC---C-cEee----HHHHHHHh----cc
Confidence 345668999999995 44333323222 2458999999976533 3333 11 1 1111 11222112 35
Q ss_pred ccEEEeccccc-CCCCHHHHHHHHHHHHhc-CCCEEEEEecCCCCch
Q 012511 167 HDLVIASYVLG-EVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 167 fDLVias~vL~-el~~~~~r~~~i~~Lw~~-~gG~LVlVEpGtp~Gf 211 (462)
+|+||.+-.-. .+-+. +.+....+. .++.+++|+-+.|+..
T Consensus 243 aDvVI~aT~s~~~~i~~----~~l~~~~~~~~~~~~vviDla~Prdi 285 (423)
T PRK00045 243 ADIVISSTGAPHPIIGK----GMVERALKARRHRPLLLVDLAVPRDI 285 (423)
T ss_pred CCEEEECCCCCCcEEcH----HHHHHHHhhccCCCeEEEEeCCCCCC
Confidence 89999864322 22112 233444322 2456788888877644
No 304
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=50.44 E-value=21 Score=37.29 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=16.9
Q ss_pred CCCCcccEEEecccccCCCC
Q 012511 162 KSEREHDLVIASYVLGEVPS 181 (462)
Q Consensus 162 ~~~~~fDLVias~vL~el~~ 181 (462)
++.++-+++.++++||+|..
T Consensus 158 fP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred cCCCceEEEEeeccceeccc
Confidence 35678999999999999963
No 305
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=49.70 E-value=65 Score=32.18 Aligned_cols=86 Identities=13% Similarity=0.196 Sum_probs=43.1
Q ss_pred CCCCeEEEECCchhHHH-HHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC-C-ceecchhHhhhhhccCCCCCcc
Q 012511 91 FSPAKVLDFGAGTGSAF-WALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-P-LIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 91 ~~p~rVLDvG~G~G~~~-~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~-~-~i~~~~~~~~l~~~l~~~~~~f 167 (462)
.+.++||=+|||...-+ .+..... ...+++.++.+++..+.++.+.+..... . .+.. ..+.+. ..+......+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~--g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~-~~l~~~~~~a 197 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIE--GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQ-QAFAEALASA 197 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhh-hhhhhhcccC
Confidence 45679999999843222 2212222 3568999999865444555554432110 0 0110 111100 0011122468
Q ss_pred cEEEecccccCCC
Q 012511 168 DLVIASYVLGEVP 180 (462)
Q Consensus 168 DLVias~vL~el~ 180 (462)
|+||.+-.+...+
T Consensus 198 DivINaTp~Gm~~ 210 (288)
T PRK12749 198 DILTNGTKVGMKP 210 (288)
T ss_pred CEEEECCCCCCCC
Confidence 9999887776543
No 306
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=47.77 E-value=47 Score=32.60 Aligned_cols=36 Identities=28% Similarity=0.262 Sum_probs=30.1
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHH
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 129 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ 129 (462)
..+||=+|++.|+..-.+.++.+. ..-|++||.|.-
T Consensus 157 GsKVLYLGAasGttVSHvSDiVGp-eG~VYAVEfs~r 192 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDIVGP-EGCVYAVEFSHR 192 (317)
T ss_pred CceEEEeeccCCceeehhhcccCC-CceEEEEEeccc
Confidence 479999999999988888888763 457899999874
No 307
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=47.02 E-value=34 Score=30.01 Aligned_cols=38 Identities=24% Similarity=0.161 Sum_probs=22.6
Q ss_pred EECCchh--HHHHHHH--HhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 98 DFGAGTG--SAFWALR--EVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 98 DvG~G~G--~~~~al~--~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
|+|+..| ..+..+. ... ...+++++|+++.+.+..+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~--~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG--PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS----SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC--CCCEEEEEECCHHHHHHHhHH
Confidence 8999999 4443332 222 356899999999998877776
No 308
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=45.84 E-value=73 Score=33.67 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=48.0
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHCC-CCCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHH
Q 012511 64 AYVASRMPAVYSACYRVLCEVRRRLP-GFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 64 AYla~r~p~~Ya~~~~vL~eL~~rlp-~~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ 136 (462)
+++-+.+...|..-.+++..+.+..+ ...+.+|+=+|+|+ |..+..++..++ .+|+++|.++.-+..|+.
T Consensus 172 s~~K~~~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~G---a~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 172 SVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQG---ARVIVTEVDPICALQAAM 243 (413)
T ss_pred hhhcccccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECChhhHHHHHh
Confidence 34444455566666677777776543 24568999999997 665555555554 379999999887776654
No 309
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=45.58 E-value=39 Score=37.32 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=33.4
Q ss_pred HHHHHCCCC-CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCH
Q 012511 83 EVRRRLPGF-SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 128 (462)
Q Consensus 83 eL~~rlp~~-~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~ 128 (462)
+|.++..-. +...|||+||-||..+-.+.+.+| ...-|+|||+-+
T Consensus 34 Qln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~p-v~slivGvDl~p 79 (780)
T KOG1098|consen 34 QLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMP-VGSLIVGVDLVP 79 (780)
T ss_pred HHHHHhccccccchheeeccCCcHHHHHHHHhCC-CCceEEEeeeee
Confidence 444444322 346899999999999988888888 456789999765
No 310
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=45.27 E-value=23 Score=36.24 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHH--------hCCC------CccEEEEEeCC-HHHHHHHHHhhcC----
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALRE--------VWPR------SLEKVNLVEPS-QSMQRAGQSLMQG---- 140 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~--------~~~~------~~~~v~~VD~S-~~ml~~Ak~ll~~---- 140 (462)
.+.++.......++.+|+|+||..|..+..+.. .+.. ...+|+.-|.- -..-.+.+.+-..
T Consensus 4 ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~ 83 (334)
T PF03492_consen 4 AIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSL 83 (334)
T ss_dssp HHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHH
T ss_pred HHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhcc
Confidence 344554433445678999999999976654222 1211 11356666632 2222222222111
Q ss_pred --CCCCCceecchhHhhhhhccCCCCCcccEEEecccccCCC
Q 012511 141 --PKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVP 180 (462)
Q Consensus 141 --~~~~~~i~~~~~~~~l~~~l~~~~~~fDLVias~vL~el~ 180 (462)
..+ -++... .-..+.+ + ++.++.|+++++++||+|.
T Consensus 84 ~~~~~-~f~~gv-pgSFy~r-L-fP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 84 KKFRN-YFVSGV-PGSFYGR-L-FPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp HHTTS-EEEEEE-ES-TTS----S-TT-EEEEEEES-TTB-S
T ss_pred CCCce-EEEEec-Cchhhhc-c-CCCCceEEEEEechhhhcc
Confidence 011 011100 0011222 1 3567899999999999886
No 311
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=43.86 E-value=59 Score=30.84 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=28.3
Q ss_pred CCCeEEEECCchh-HHHHHHHHh--CCCCccEEEEEeCCHHHHHHH
Q 012511 92 SPAKVLDFGAGTG-SAFWALREV--WPRSLEKVNLVEPSQSMQRAG 134 (462)
Q Consensus 92 ~p~rVLDvG~G~G-~~~~al~~~--~~~~~~~v~~VD~S~~ml~~A 134 (462)
+|..|+++|+--| +++|.++.. ++ +..+|.++|++-.-++-+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~G-q~~kvl~vdIdi~~~~p~ 113 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIG-QPFKVLGVDIDIKPLDPA 113 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcC-CCceEEEEecccCcCChh
Confidence 5789999998754 555544432 33 357899999887665443
No 312
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=43.80 E-value=1.2e+02 Score=33.12 Aligned_cols=62 Identities=31% Similarity=0.325 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHHCCC-------CCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHH
Q 012511 72 AVYSACYRVLCEVRRRLPG-------FSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 72 ~~Ya~~~~vL~eL~~rlp~-------~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ 136 (462)
+.|.++......+-+.+++ ..+.+||=+|+|+ |..+..++..++ ..++++|.+++-++.++.
T Consensus 136 AGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lG---A~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 136 AGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLG---AIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred HHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH
Confidence 5677777777777665532 3568999999996 565555666554 369999999998888776
No 313
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.51 E-value=93 Score=31.32 Aligned_cols=129 Identities=17% Similarity=0.173 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCC-C----ce
Q 012511 73 VYSACYRVLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-P----LI 147 (462)
Q Consensus 73 ~Ya~~~~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~-~----~i 147 (462)
.+++-.+.+++..+..-+-.-..|+-+|||-=+-++-+- |+. ...|.=||. |+.++.=++++.+.... | .+
T Consensus 73 ~~a~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~--~~~-~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~V 148 (297)
T COG3315 73 FLAARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLD--WPK-GTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLV 148 (297)
T ss_pred hHHHHHHHHHHHHHHHHHhcccEEEEeccccccceeecC--CCC-CCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEE
Confidence 344445566654433211114789999999766444332 442 456777776 44555545556554321 2 22
Q ss_pred ecchhHhhhhhccC---CCCCcccEEEecccccCCCCHHHHHHHHHHHHhc-CCCEEEEEecC
Q 012511 148 HSYNSIQALNKDIS---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPG 206 (462)
Q Consensus 148 ~~~~~~~~l~~~l~---~~~~~fDLVias~vL~el~~~~~r~~~i~~Lw~~-~gG~LVlVEpG 206 (462)
.......++.+.+. +....--++|+-.+|.+|+ +++...++..+-.. +.|..|+.+-+
T Consensus 149 a~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~-~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 149 AVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLP-EEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred eccccccchHHHHHhcCCCcCCCeEEEeccccccCC-HHHHHHHHHHHHHhCCCCceEEEecc
Confidence 21111012222221 2234456899999999997 77778888888776 57888887765
No 314
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=42.08 E-value=47 Score=33.06 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=31.4
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCC--ccEEEEEeCCHHH
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRS--LEKVNLVEPSQSM 130 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~--~~~v~~VD~S~~m 130 (462)
+..|+=+|+|||+-+--+.+.|++. ..+.+++|+.+.-
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~ 100 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHD 100 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCccc
Confidence 3599999999999988888888742 3689999998875
No 315
>PLN00203 glutamyl-tRNA reductase
Probab=40.67 E-value=2.8e+02 Score=30.27 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=53.6
Q ss_pred CCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcccE
Q 012511 91 FSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 169 (462)
Q Consensus 91 ~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fDL 169 (462)
+...+|+=||+|. |..+.. ........++++++.+.+-.+.....+.+. ..... ...++.. .-..+|+
T Consensus 264 l~~kkVlVIGAG~mG~~~a~--~L~~~G~~~V~V~nRs~era~~La~~~~g~-~i~~~----~~~dl~~----al~~aDV 332 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVK--HLVSKGCTKMVVVNRSEERVAALREEFPDV-EIIYK----PLDEMLA----CAAEADV 332 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHH--HHHhCCCCeEEEEeCCHHHHHHHHHHhCCC-ceEee----cHhhHHH----HHhcCCE
Confidence 5678999999984 332222 111112457999999976544333322211 11111 0111211 1236799
Q ss_pred EEecccc-cCCCCHHHHHHHHHHHHhc---CCCEEEEEecCCCCch
Q 012511 170 VIASYVL-GEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTPQGS 211 (462)
Q Consensus 170 Vias~vL-~el~~~~~r~~~i~~Lw~~---~gG~LVlVEpGtp~Gf 211 (462)
||++-.- +.+-. .+.++.+... .+..++||+-+-|+..
T Consensus 333 VIsAT~s~~pvI~----~e~l~~~~~~~~~~~~~~~~IDLAvPRdI 374 (519)
T PLN00203 333 VFTSTSSETPLFL----KEHVEALPPASDTVGGKRLFVDISVPRNV 374 (519)
T ss_pred EEEccCCCCCeeC----HHHHHHhhhcccccCCCeEEEEeCCCCCC
Confidence 9876322 22211 2344444321 1345899998888753
No 316
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=39.33 E-value=91 Score=30.91 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=39.9
Q ss_pred CCCCeEEEECCchh-HH-HHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCccc
Q 012511 91 FSPAKVLDFGAGTG-SA-FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 91 ~~p~rVLDvG~G~G-~~-~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
.++.+||=+|+|.. .+ +.++.+ . ...+++.+..+.+ .++.+++.......+.......++ ......+|
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~-~--G~~~i~I~nRt~~---ka~~La~~~~~~~~~~~~~~~~~~----~~~~~~~D 192 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALAS-L--GVTDITVINRNPD---KLSRLVDLGVQVGVITRLEGDSGG----LAIEKAAE 192 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHH-c--CCCeEEEEeCCHH---HHHHHHHHhhhcCcceeccchhhh----hhcccCCC
Confidence 45679999999843 22 233333 2 3568999999864 334443322111101100000111 11124689
Q ss_pred EEEecccccC
Q 012511 169 LVIASYVLGE 178 (462)
Q Consensus 169 LVias~vL~e 178 (462)
+||.+-.+..
T Consensus 193 iVInaTp~g~ 202 (282)
T TIGR01809 193 VLVSTVPADV 202 (282)
T ss_pred EEEECCCCCC
Confidence 9998876654
No 317
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=39.18 E-value=2e+02 Score=27.27 Aligned_cols=33 Identities=30% Similarity=0.217 Sum_probs=20.7
Q ss_pred CCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCC
Q 012511 93 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPS 127 (462)
Q Consensus 93 p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S 127 (462)
..+|+=+|||. |..+....... ...+++.+|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence 46899999993 44332222222 35688888877
No 318
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.31 E-value=12 Score=34.19 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=32.5
Q ss_pred CCCCCcccEEEecccccCCCCHHH--HHHHHHHHHhcCCCEEEEEec
Q 012511 161 SKSEREHDLVIASYVLGEVPSLQD--RITIVRQLWDLTRDVLVLVEP 205 (462)
Q Consensus 161 ~~~~~~fDLVias~vL~el~~~~~--r~~~i~~Lw~~~gG~LVlVEp 205 (462)
++.+++.|+|.+.|+|.||.-.+- .+....++++ |||.|-|.-|
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr-p~G~LriAvP 87 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR-PGGKLRIAVP 87 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-cCcEEEEEcC
Confidence 456789999999999999973332 2445666665 7999988654
No 319
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=36.64 E-value=1.9e+02 Score=28.99 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=32.5
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
...+||=.|||+ |.++.+++...+ ..+++++|.+++-++.++++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHc
Confidence 457899999984 555556666543 34789999999998888763
No 320
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=34.01 E-value=1.5e+02 Score=31.24 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=52.1
Q ss_pred CCCCCCCeEEEECCch-hHHH-HHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCC
Q 012511 88 LPGFSPAKVLDFGAGT-GSAF-WALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSER 165 (462)
Q Consensus 88 lp~~~p~rVLDvG~G~-G~~~-~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~ 165 (462)
++++...+||=+|+|. |..+ .++.. ....+++.+..+.+ .|+.+....+....+ . +.++.. .-.
T Consensus 176 ~~~l~~kkvlviGaG~~a~~va~~L~~---~g~~~I~V~nRt~~---ra~~La~~~~~~~~~-~---~~~l~~----~l~ 241 (414)
T PRK13940 176 LDNISSKNVLIIGAGQTGELLFRHVTA---LAPKQIMLANRTIE---KAQKITSAFRNASAH-Y---LSELPQ----LIK 241 (414)
T ss_pred hcCccCCEEEEEcCcHHHHHHHHHHHH---cCCCEEEEECCCHH---HHHHHHHHhcCCeEe-c---HHHHHH----Hhc
Confidence 3456778999999983 2222 22322 13468999998864 344444332211111 1 112221 124
Q ss_pred cccEEEecccccC-CCCHHHHHHHHHHHHhcCCCEEEEEecCCCCch
Q 012511 166 EHDLVIASYVLGE-VPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 166 ~fDLVias~vL~e-l~~~~~r~~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
.+|+||++-.-.+ +=+.+. .+ +.-+++|+-+-|+..
T Consensus 242 ~aDiVI~aT~a~~~vi~~~~--------~~--~~~~~~iDLavPRdi 278 (414)
T PRK13940 242 KADIIIAAVNVLEYIVTCKY--------VG--DKPRVFIDISIPQAL 278 (414)
T ss_pred cCCEEEECcCCCCeeECHHH--------hC--CCCeEEEEeCCCCCC
Confidence 6899997654333 222211 11 234788888888765
No 321
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=33.14 E-value=16 Score=31.21 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=23.9
Q ss_pred cccEEEecccccCC--C-CHHHHHHHHHHHHhc--CCCEEEEEecC
Q 012511 166 EHDLVIASYVLGEV--P-SLQDRITIVRQLWDL--TRDVLVLVEPG 206 (462)
Q Consensus 166 ~fDLVias~vL~el--~-~~~~r~~~i~~Lw~~--~gG~LVlVEpG 206 (462)
+||+|+|-.|..++ . .++....+++++++. |||.||| ||-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCC
Confidence 48999988776544 2 234456677777765 6777775 553
No 322
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=33.07 E-value=2.7e+02 Score=25.41 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=50.1
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC-CC----CCceecchhHhhhhhccC---CCCC
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KD----LPLIHSYNSIQALNKDIS---KSER 165 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~-~~----~~~i~~~~~~~~l~~~l~---~~~~ 165 (462)
..|+-+|||-=|-.|.+....+ ...++-||.-.-+ +.-++++... .. ..++.....-..+...+. ....
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~--~~~~~evD~p~v~-~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAG--GVRWFEVDLPEVI-ALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTT--TEEEEEEE-HHHH-HHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred cEEEEcCCCCCchHHHhhcccc--ceEEEEeCCHHHH-HHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 4899999999888888876432 4577778875544 4334444332 11 122322211111111121 2244
Q ss_pred cccEEEecccccCCCCHHHHHHHHHHH
Q 012511 166 EHDLVIASYVLGEVPSLQDRITIVRQL 192 (462)
Q Consensus 166 ~fDLVias~vL~el~~~~~r~~~i~~L 192 (462)
..-++|+--++.+|+ .++...+++.+
T Consensus 157 ~ptl~i~Egvl~Yl~-~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLS-PEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS--HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCC-HHHHHHHHHHh
Confidence 567889999999996 66666666554
No 323
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=33.03 E-value=1.5e+02 Score=28.87 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
...+||=+|+|+ |..+..++...+ ...++++|.+++-++.++++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G--~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAG--AARVVAADPSPDRRELALSF 164 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHc
Confidence 457899999884 555555665553 34588999999888887764
No 324
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=30.95 E-value=2.4e+02 Score=28.72 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=32.3
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
...+||=+|+|+ |..+.+++..++ ..+++++|.+++-++.++++
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G--~~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAK--ASRIIAIDINPAKFELAKKL 229 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHh
Confidence 357899999984 555566666554 24799999999988888653
No 325
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=29.08 E-value=2.2e+02 Score=25.89 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=27.8
Q ss_pred HHHHHHHHCCCCCCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCC
Q 012511 80 VLCEVRRRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPS 127 (462)
Q Consensus 80 vL~eL~~rlp~~~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S 127 (462)
.|+.......+ .+.-|||+|=|.|...-.+.+.+|+ .++.+.|..
T Consensus 17 ~L~~a~~~v~~-~~G~VlElGLGNGRTydHLRe~~p~--R~I~vfDR~ 61 (160)
T PF12692_consen 17 CLNWAAAQVAG-LPGPVLELGLGNGRTYDHLREIFPD--RRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--S--S-EEEEESS
T ss_pred HHHHHHHHhcC-CCCceEEeccCCCccHHHHHHhCCC--CeEEEEeee
Confidence 44554544433 2468999999999999999999984 689999954
No 326
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=29.04 E-value=50 Score=32.35 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=26.9
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCH
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 128 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~ 128 (462)
..+|+=+|+| |.++|++..+-.....+++.||...
T Consensus 30 ~~~V~VvGiG-GVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 30 QAHVCVVGIG-GVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hCcEEEEecC-chhHHHHHHHHHcCCCeEEEEeccc
Confidence 3689999999 7888876665544578899998654
No 327
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=28.87 E-value=3e+02 Score=25.06 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=60.5
Q ss_pred EECCchhHHHHHHHHhCC-CCccEEEEEeCCHHHHHHHH---HhhcCC--CCCCceecchhHhhhhhccCCCCCcccEEE
Q 012511 98 DFGAGTGSAFWALREVWP-RSLEKVNLVEPSQSMQRAGQ---SLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVI 171 (462)
Q Consensus 98 DvG~G~G~~~~al~~~~~-~~~~~v~~VD~S~~ml~~Ak---~ll~~~--~~~~~i~~~~~~~~l~~~l~~~~~~fDLVi 171 (462)
=||=|.-+++.+++..++ ....-.|..|...+..+... ..++.. .+..+++.++ ...+..........||.||
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VD-at~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVD-ATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCC-CCcccccccccCCcCCEEE
Confidence 366777788888888776 23345566777776655443 222221 1222222211 1122222222457899999
Q ss_pred ecccccC--CCCHHHHH----HHHHHHHhc------CCCEEE-EEecCCC-CchHHHHHHHH
Q 012511 172 ASYVLGE--VPSLQDRI----TIVRQLWDL------TRDVLV-LVEPGTP-QGSSIISQMRS 219 (462)
Q Consensus 172 as~vL~e--l~~~~~r~----~~i~~Lw~~------~gG~LV-lVEpGtp-~Gf~~I~~aR~ 219 (462)
.++=-.. ..+....+ .+|....+. ++|.+. -+-.|-| ..|.+...|++
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~ 142 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAE 142 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHh
Confidence 8764433 11112222 344444332 456554 4455556 56676655554
No 328
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=27.34 E-value=3.9e+02 Score=26.26 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=39.8
Q ss_pred CCCCCeEEEECCch-hHH-HHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCcc
Q 012511 90 GFSPAKVLDFGAGT-GSA-FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREH 167 (462)
Q Consensus 90 ~~~p~rVLDvG~G~-G~~-~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~f 167 (462)
+....+||=+|+|. |.. +.++.. . ...++++++.+.+-.+...+.+.......+ .+ .....-..+
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~-~--g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~--------~~--~~~~~~~~~ 186 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLD-L--GVAEITIVNRTVERAEELAKLFGALGKAEL--------DL--ELQEELADF 186 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHH-c--CCCEEEEEeCCHHHHHHHHHHhhhccceee--------cc--cchhccccC
Confidence 34567999999982 222 223332 2 236899999997644333222221110110 00 011122468
Q ss_pred cEEEecccccCC
Q 012511 168 DLVIASYVLGEV 179 (462)
Q Consensus 168 DLVias~vL~el 179 (462)
|+||.+-....-
T Consensus 187 DivInaTp~g~~ 198 (278)
T PRK00258 187 DLIINATSAGMS 198 (278)
T ss_pred CEEEECCcCCCC
Confidence 999988666543
No 329
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=27.26 E-value=84 Score=31.53 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=27.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCc--cEEEEEeCCHHH
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSL--EKVNLVEPSQSM 130 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~--~~v~~VD~S~~m 130 (462)
++..|+=+|++||+-+--+.+.|+... .+.+++|+.+.-
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~ 98 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFC 98 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchh
Confidence 356899999999999988888887422 579999998864
No 330
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=26.90 E-value=3.6e+02 Score=27.07 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=29.6
Q ss_pred CCCeEEEECCch-hHHHHHHHHh-CCCCccEEEEEeCCHHHHHHHHH
Q 012511 92 SPAKVLDFGAGT-GSAFWALREV-WPRSLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~-~~~~~~~v~~VD~S~~ml~~Ak~ 136 (462)
...+||=+|||+ |..+..++.. ++ ..+++++|.+++-++.++.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g--~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYP--ESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcC--CCcEEEEeCcHhHHHHHhh
Confidence 357999999984 4444444442 33 2479999999988777764
No 331
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=26.50 E-value=2.4e+02 Score=27.94 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=24.9
Q ss_pred CCCCCeEEEECCchh-H-HHHHHHHhCCCCccEEEEEeCCHHH
Q 012511 90 GFSPAKVLDFGAGTG-S-AFWALREVWPRSLEKVNLVEPSQSM 130 (462)
Q Consensus 90 ~~~p~rVLDvG~G~G-~-~~~al~~~~~~~~~~v~~VD~S~~m 130 (462)
+..+++||=+|||.. . .++++.. . ...+++.+|.+.+-
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~-~--G~~~I~I~nR~~~k 163 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLT-L--GVERLTIFDVDPAR 163 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHH-c--CCCEEEEECCCHHH
Confidence 445689999999943 2 2333333 2 35689999999753
No 332
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=26.32 E-value=2.4e+02 Score=26.99 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=26.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCH
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 128 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~ 128 (462)
...+|+|+=-|.|..+..+....+. ...|++.-+.+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp-~G~Vy~~~p~e 83 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGP-KGKVYAYVPAE 83 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCC-ceeEEEecchh
Confidence 3479999999999988888877653 34666554443
No 333
>PLN02740 Alcohol dehydrogenase-like
Probab=26.27 E-value=2.3e+02 Score=29.03 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=32.4
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
...+||=+|+|+ |.++..++..++ ...|+++|.+++-++.++++
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G--~~~Vi~~~~~~~r~~~a~~~ 242 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARG--ASKIIGVDINPEKFEKGKEM 242 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CCcEEEEcCChHHHHHHHHc
Confidence 357999999984 555556666554 34699999999988888763
No 334
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=25.57 E-value=3.1e+02 Score=21.94 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=22.7
Q ss_pred HHHHHHHHHCCCCCCCeEEEECCchhHHHHH-HHHhCCCCccEEEEEeC
Q 012511 79 RVLCEVRRRLPGFSPAKVLDFGAGTGSAFWA-LREVWPRSLEKVNLVEP 126 (462)
Q Consensus 79 ~vL~eL~~rlp~~~p~rVLDvG~G~G~~~~a-l~~~~~~~~~~v~~VD~ 126 (462)
+-+..++..-+-..|++||=+||-+|.++-+ +...|+ ...+.++|-.
T Consensus 25 ~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg-~gA~TiGV~f 72 (78)
T PF12242_consen 25 NQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFG-AGADTIGVSF 72 (78)
T ss_dssp HHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHC-C--EEEEEE-
T ss_pred HHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhc-CCCCEEEEee
Confidence 3344444432223579999999988865532 333344 3455666643
No 335
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=25.38 E-value=3.5e+02 Score=27.17 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=32.5
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
.+.+||=+|+|+ |..+..++..++ .++++++.+++-++.++++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMG---AAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHHh
Confidence 457999999975 666666666554 3689999999988888663
No 336
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=25.32 E-value=3.2e+02 Score=28.09 Aligned_cols=10 Identities=50% Similarity=0.780 Sum_probs=8.3
Q ss_pred CeEEEECCch
Q 012511 94 AKVLDFGAGT 103 (462)
Q Consensus 94 ~rVLDvG~G~ 103 (462)
-+||-+|+|.
T Consensus 41 ~kiLviGAGG 50 (422)
T KOG2015|consen 41 CKILVIGAGG 50 (422)
T ss_pred CcEEEEccCc
Confidence 5799999983
No 337
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=24.93 E-value=2.5e+02 Score=27.51 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=30.3
Q ss_pred CCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHH
Q 012511 93 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 136 (462)
Q Consensus 93 p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ 136 (462)
+.+||..|+|. |..+..++...+ .++++++.++...+.++.
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G---~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMG---AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHH
Confidence 46899988873 666666666543 469999999998887754
No 338
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=24.86 E-value=61 Score=34.02 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCEEEEEecCCCCch
Q 012511 187 TIVRQLWDLTRDVLVLVEPGTPQGS 211 (462)
Q Consensus 187 ~~i~~Lw~~~gG~LVlVEpGtp~Gf 211 (462)
+.|...++ .|-||++|..+|-|-
T Consensus 112 ~sIa~~L~--kG~LVIlEST~~PGT 134 (436)
T COG0677 112 RSIAPVLK--KGDLVILESTTPPGT 134 (436)
T ss_pred HHHHHhcC--CCCEEEEecCCCCCc
Confidence 34444444 699999999888885
No 339
>PLN02827 Alcohol dehydrogenase-like
Probab=23.90 E-value=3.4e+02 Score=27.77 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
.+.+||=+|+|+ |.++..++...+ ...++++|.+++-++.++++
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G--~~~vi~~~~~~~~~~~a~~l 237 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRG--ASQIIGVDINPEKAEKAKTF 237 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHHc
Confidence 457999999874 555555666554 34688999999888887654
No 340
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.86 E-value=2.2e+02 Score=29.66 Aligned_cols=46 Identities=24% Similarity=0.101 Sum_probs=37.6
Q ss_pred CCeEEEECCchh-HHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCC
Q 012511 93 PAKVLDFGAGTG-SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 141 (462)
Q Consensus 93 p~rVLDvG~G~G-~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~ 141 (462)
+.+|||.=||+| .++..+.+.+. .++++-|+|+...+..++++.-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~---~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV---VKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc---cEEEEccCCHHHHHHHHHHHHhc
Confidence 689999999999 46666776553 28999999999999999887643
No 341
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=23.60 E-value=71 Score=32.51 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=29.6
Q ss_pred CCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHH
Q 012511 93 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSM 130 (462)
Q Consensus 93 p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~m 130 (462)
..-|+=+||| |.++|+++-.......++..||+.+-.
T Consensus 74 ~syVVVVG~G-gVGSwv~nmL~RSG~qKi~iVDfdqVS 110 (430)
T KOG2018|consen 74 NSYVVVVGAG-GVGSWVANMLLRSGVQKIRIVDFDQVS 110 (430)
T ss_pred CcEEEEEecC-chhHHHHHHHHHhcCceEEEechhhcc
Confidence 4679999999 888999887766567889999977643
No 342
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=23.53 E-value=3.2e+02 Score=26.26 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhh
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 138 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll 138 (462)
.|-++|=||-|..+.+|+... ...+-+.+|-++..+..++...
T Consensus 39 aPCN~LVFGLghdsllW~aLN----~gGrTvFLEEd~~~i~~~~~~~ 81 (225)
T TIGR01627 39 SPCNILVFGLAHQYLMWSSLN----HRGRTVFIEEEKIMIAKAEVNP 81 (225)
T ss_pred CCceEEEeccCcchHHHHHhc----CCCeeEEecCCHHHHHHHhhcC
Confidence 357999999999999998775 3456788999999988876543
No 343
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=23.37 E-value=4.7e+02 Score=22.52 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=25.8
Q ss_pred CCCCCeEEEECCch-h-HHHHHHHHhCCCCccEEEEEeCCHHHHHH
Q 012511 90 GFSPAKVLDFGAGT-G-SAFWALREVWPRSLEKVNLVEPSQSMQRA 133 (462)
Q Consensus 90 ~~~p~rVLDvG~G~-G-~~~~al~~~~~~~~~~v~~VD~S~~ml~~ 133 (462)
+..+.+|+-+|+|. | ..+.++.. . ...+++++|.+++-.+.
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~-~--g~~~v~v~~r~~~~~~~ 58 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAE-L--GAAKIVIVNRTLEKAKA 58 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH-C--CCCEEEEEcCCHHHHHH
Confidence 35678999999983 2 22233333 1 13679999999765443
No 344
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=23.31 E-value=3e+02 Score=27.74 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=32.3
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
...+||=+|+|+ |.++.+++..++ ..+++++|.++.-++.++++
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G--~~~Vi~~~~~~~~~~~~~~~ 220 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAG--ASKIIAVDIDDRKLEWAREF 220 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHc
Confidence 357999999874 555666666554 34699999999988888653
No 345
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=22.88 E-value=1.3e+02 Score=30.51 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=33.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCC
Q 012511 92 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP 145 (462)
Q Consensus 92 ~p~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~ 145 (462)
...+|.-+|+|.-. +++.... ...+|.+||++++-+..-+-.+.....+|
T Consensus 63 ~ghrivtigSGGcn-~L~ylsr---~Pa~id~VDlN~ahiAln~lklaA~R~Lp 112 (414)
T COG5379 63 IGHRIVTIGSGGCN-MLAYLSR---APARIDVVDLNPAHIALNRLKLAAFRHLP 112 (414)
T ss_pred CCcEEEEecCCcch-HHHHhhc---CCceeEEEeCCHHHHHHHHHHHHHHhhcc
Confidence 34689999999543 4443332 34689999999998877665555443333
No 346
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=22.45 E-value=4.4e+02 Score=26.07 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=30.6
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
.+.+||=+|+|+ |..+..++..++ ...+++++.+++-++.++++
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~~ 207 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKAL 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh
Confidence 357898899873 444555666554 23499999999888877654
No 347
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.72 E-value=6.3e+02 Score=26.49 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=69.6
Q ss_pred eecccccccccccceeccccch-hhhcCCcccHHhhhhhhhc--ccccCcccccCHH---HHHHHHH--hcCch----hH
Q 012511 7 RLSESFNAIKGVNLTLTESTSK-ELFEDPLKSVEQSKRWKIK--SAYGDIGLKYRDD---ETIAYVA--SRMPA----VY 74 (462)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~l~~d~~~~~~~~~~w~~~--~~y~~~~~~y~~~---e~~AYla--~r~p~----~Y 74 (462)
..++=+..++|.|....++... ..+...+++.|++..|.-. ..+.. ...... +..+-++ .+++. ..
T Consensus 86 k~~~l~~~~~~vn~Gt~~~~~~~~~~~~~~ls~E~l~~wi~k~~~v~d~--~s~~q~~~l~h~~~~~~L~~~~~t~kKhl 163 (420)
T KOG2811|consen 86 KESQLIYIKKDVNGGTDETDKIDSSIEISDLSPEELNIWICKEIDVSDG--LSTQQKHVLQHESLLANLEEIGNTKKKHL 163 (420)
T ss_pred ccccccccccccccCcccccccccccchhhcCHHHHHHHHHHHHHhhcc--ccchHHHHHhhHHHHHHHhccchhHHHHH
Confidence 4556667777788884443333 3444566788899999864 23332 111111 1111121 22221 11
Q ss_pred HHHHHHHHHHHHHCCCCC-C-CeEEEECCchhHHHHHHHHhCCCCc-cEEEEEeCCHHHHHHHHHhhc
Q 012511 75 SACYRVLCEVRRRLPGFS-P-AKVLDFGAGTGSAFWALREVWPRSL-EKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 75 a~~~~vL~eL~~rlp~~~-p-~rVLDvG~G~G~~~~al~~~~~~~~-~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
-...++|..|-.. ..+. | ..+.+||||-|-++..+....+... .-++.||....-+..-+.+.+
T Consensus 164 ~QqsSllg~lE~~-~~l~~~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~ 230 (420)
T KOG2811|consen 164 IQQSSLLGHLEEL-GLLTAPSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRN 230 (420)
T ss_pred HHHHHHHhHHHhc-cccCCCcceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhc
Confidence 1223344444432 3333 3 5899999999999988887775321 123448877766655444433
No 348
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=21.60 E-value=50 Score=34.19 Aligned_cols=15 Identities=20% Similarity=0.601 Sum_probs=0.0
Q ss_pred eCCcEEEeeccCCCCCCCCCc
Q 012511 413 RGRQVAMDVCRSIKRDGSEGS 433 (462)
Q Consensus 413 r~ghV~ld~Ct~~~~~~~~G~ 433 (462)
++||.+||||.+ .|.
T Consensus 154 ~p~~~VLDmCAA------PG~ 168 (375)
T KOG2198|consen 154 KPGDKVLDMCAA------PGG 168 (375)
T ss_pred CCCCeeeeeccC------CCc
No 349
>PRK06153 hypothetical protein; Provisional
Probab=21.56 E-value=1.2e+02 Score=31.78 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=22.7
Q ss_pred CCeEEEECCc-hhHHHHHHHHhCCCCccEEEEEeCCH
Q 012511 93 PAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPSQ 128 (462)
Q Consensus 93 p~rVLDvG~G-~G~~~~al~~~~~~~~~~v~~VD~S~ 128 (462)
..+|+=+||| +|..+....... .+.+++++|...
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~--GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKT--PVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHc--CCCEEEEECCCE
Confidence 4799999998 454443333333 367999999664
No 350
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=21.39 E-value=1.6e+02 Score=28.66 Aligned_cols=41 Identities=27% Similarity=0.244 Sum_probs=25.6
Q ss_pred CeEEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhh
Q 012511 94 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 138 (462)
Q Consensus 94 ~rVLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll 138 (462)
.+|||.=+|-|.=++.++.+ + .+|+++|.|+-+-.+.+.-+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~-G---~~V~~lErspvia~Ll~dGL 117 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL-G---CKVTGLERSPVIAALLKDGL 117 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH-T-----EEEEE--HHHHHHHHHHH
T ss_pred CEEEECCCcchHHHHHHHcc-C---CeEEEEECCHHHHHHHHHHH
Confidence 38999999999877766653 3 48999999998765554433
No 351
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.13 E-value=2.5e+02 Score=28.26 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=31.5
Q ss_pred EEEECCchhHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhc
Q 012511 96 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 139 (462)
Q Consensus 96 VLDvG~G~G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~ 139 (462)
|+|+=||.|.+...+... ...-+.++|.++...+..+.+..
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC
Confidence 689999999888887652 24456789999999888776654
No 352
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=20.57 E-value=3.2e+02 Score=28.83 Aligned_cols=62 Identities=15% Similarity=0.041 Sum_probs=40.2
Q ss_pred HhcCchhHHHHHHHHHHHHHHCC-CCCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHH
Q 012511 67 ASRMPAVYSACYRVLCEVRRRLP-GFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQ 131 (462)
Q Consensus 67 a~r~p~~Ya~~~~vL~eL~~rlp-~~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml 131 (462)
-+.+...|..-.+++..+.+... .....+|+=+|+|+ |..+...+..++ .+|+++|.++.-.
T Consensus 168 K~~fDn~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~G---a~ViV~d~dp~r~ 231 (406)
T TIGR00936 168 KSLFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMG---ARVIVTEVDPIRA 231 (406)
T ss_pred chhhhcccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCc---CEEEEEeCChhhH
Confidence 33344456655666666655422 24568999999996 666655666554 4799999888643
No 353
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=20.43 E-value=6.5e+02 Score=25.87 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=57.2
Q ss_pred CCCCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHhhcCCCCCCceecchhHhhhhhccCCCCCccc
Q 012511 90 GFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHD 168 (462)
Q Consensus 90 ~~~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~ll~~~~~~~~i~~~~~~~~l~~~l~~~~~~fD 168 (462)
+-.|.+|.=+|.|. |+.+--++--+ ..+|+.+|.|..-++....++... +..+. .+...+.. .-.++|
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~gl---gA~Vtild~n~~rl~~ldd~f~~r--v~~~~--st~~~iee----~v~~aD 233 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGL---GADVTILDLNIDRLRQLDDLFGGR--VHTLY--STPSNIEE----AVKKAD 233 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhcc---CCeeEEEecCHHHHhhhhHhhCce--eEEEE--cCHHHHHH----Hhhhcc
Confidence 34677888999984 66554444333 468999999998877766655431 21111 11122322 235789
Q ss_pred EEEecccccCCCCHHH-HHHHHHHHHhcCCCEEEE
Q 012511 169 LVIASYVLGEVPSLQD-RITIVRQLWDLTRDVLVL 202 (462)
Q Consensus 169 LVias~vL~el~~~~~-r~~~i~~Lw~~~gG~LVl 202 (462)
+||.+-.+---..+.- ..+.+++| ++|.++|=
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk~M--kpGsVivD 266 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVKQM--KPGSVIVD 266 (371)
T ss_pred EEEEEEEecCCCCceehhHHHHHhc--CCCcEEEE
Confidence 9998765544433332 12344444 36776654
No 354
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=20.34 E-value=4.5e+02 Score=26.64 Aligned_cols=44 Identities=16% Similarity=0.057 Sum_probs=31.1
Q ss_pred CCCeEEEECCch-hHHHHHHHHhCCCCccEEEEEeCCHHHHHHHHHh
Q 012511 92 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 137 (462)
Q Consensus 92 ~p~rVLDvG~G~-G~~~~al~~~~~~~~~~v~~VD~S~~ml~~Ak~l 137 (462)
...+||=.|+|+ |..+.+++...+ ...|+++|.+++-++.++++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G--~~~Vi~~~~~~~r~~~a~~~ 235 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAG--ASQVVAVDLNEDKLALAREL 235 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHHc
Confidence 346888899874 555555565443 23699999999988888753
Done!