BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012512
         (462 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
           With Ribonuclease I
 pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
           With Ribonuclease I
 pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
           Human Ribonuclease Inhibitor Complexed With Ribonuclease
           I
 pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
           Human Ribonuclease Inhibitor Complexed With Ribonuclease
           I
          Length = 461

 Score = 36.6 bits (83), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 367 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426
           +A  +D+ SAL   P L  L++  N + D G+  ++      S +   + +L L+NC L+
Sbjct: 42  EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK---IQKLSLQNCCLT 98

Query: 427 GRGVSQLLDTLSTLRRPPT--SLSIADNNLG 455
           G G   L  TL TL   PT   L ++DN LG
Sbjct: 99  GAGCGVLSSTLRTL---PTLQELHLSDNLLG 126



 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 373 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432
           L S L  +P L+ L +SDN + D G++ L    +    R   L +L LE C LS      
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR---LEKLQLEYCSLSAASCEP 161

Query: 433 LLDTLSTLRRPP--TSLSIADNNL 454
           L    S LR  P    L++++N++
Sbjct: 162 L---ASVLRAKPDFKELTVSNNDI 182


>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
 pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
 pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
           Complex With Human Eosinophil Derived Neurotoxin At 2a
           Resolution
 pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
           Complex With Human Eosinophil Derived Neurotoxin At 2a
           Resolution
          Length = 460

 Score = 36.6 bits (83), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 367 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426
           +A  +D+ SAL   P L  L++  N + D G+  ++      S +   + +L L+NC L+
Sbjct: 41  EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK---IQKLSLQNCCLT 97

Query: 427 GRGVSQLLDTLSTLRRPPT--SLSIADNNLG 455
           G G   L  TL TL   PT   L ++DN LG
Sbjct: 98  GAGCGVLSSTLRTL---PTLQELHLSDNLLG 125



 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 373 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432
           L S L  +P L+ L +SDN + D G++ L    +    R   L +L LE C LS      
Sbjct: 104 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR---LEKLQLEYCSLSAASCEP 160

Query: 433 LLDTLSTLRRPP--TSLSIADNNL 454
           L    S LR  P    L++++N++
Sbjct: 161 L---ASVLRAKPDFKELTVSNNDI 181


>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
 pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
          Length = 457

 Score = 35.8 bits (81), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 368 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427
           A+ +DL   +    +L  LD+  N + D GI  L P  +  + R   L  L+L  C+++ 
Sbjct: 210 ANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASR---LKTLWLWECDITA 266

Query: 428 RGVSQLLDTLSTLRRPPTSLSIADNNLG 455
            G   L   L   +     LS+A N LG
Sbjct: 267 SGCRDLCRVLQA-KETLKELSLAGNKLG 293



 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 371 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 430
           +D+GSAL   P+L  L +  N + D G+  ++      S  C  + +L L+NC L+  G 
Sbjct: 42  KDIGSALRANPSLTELCLRTNELGDAGVHLVLQGL--QSPTCK-IQKLSLQNCSLTEAGC 98

Query: 431 SQLLDTLSTLRRPPT--SLSIADNNLG 455
             L    STLR  PT   L ++DN LG
Sbjct: 99  GVL---PSTLRSLPTLRELHLSDNPLG 122



 Score = 31.6 bits (70), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 373 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432
           L S L  +P L  L +SDN + D G+R L    +    +C+ L +L LE C L+      
Sbjct: 101 LPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDP--QCH-LEKLQLEYCRLTAASCEP 157

Query: 433 LLDTLSTLRRPPTSLSIADNNLGRFCA 459
           L   L    R    L++++N++G   A
Sbjct: 158 LASVLRA-TRALKELTVSNNDIGEAGA 183


>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
           With Mouse Ribonuclease 1
 pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
           With Mouse Ribonuclease 1
 pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
           With Mouse Ribonuclease 1
 pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
           With Mouse Ribonuclease 1
          Length = 457

 Score = 33.5 bits (75), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 368 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427
           A+ +DL   +    +L+ LD+S N + + GI +L P  +  S +   L  L+L  C+++ 
Sbjct: 210 ANCKDLCDVVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCK---LRTLWLWECDITA 266

Query: 428 RGVSQLLDTLSTLRRPPTSLSIADNNL 454
            G   L   L   ++    LS+A N L
Sbjct: 267 EGCKDLCRVLRA-KQSLKELSLASNEL 292



 Score = 29.6 bits (65), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 375 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 434
           S L    +L  L +S N + D+G++ L     Q       L EL+L +C+++  G S L 
Sbjct: 331 SVLTKSRSLLELQMSSNPLGDEGVQELCKALSQPD---TVLRELWLGDCDVTNSGCSSLA 387

Query: 435 DTLSTLRRPPTSLSIADNNLG 455
           + L    R    L +++N +G
Sbjct: 388 NVLLA-NRSLRELDLSNNCMG 407


>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
           Crystals
 pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
           Crystals
          Length = 386

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 376 ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 435
            L +   L++LD+ DNT    G  +L      A +    L EL L +C LS RG + ++D
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 436 TLSTL 440
             S L
Sbjct: 267 AFSKL 271


>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
           Activating Protein
 pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
           Activating Protein
          Length = 385

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 376 ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 435
            L +   L++LD+ DNT    G  +L      A +    L EL L +C LS RG + ++D
Sbjct: 210 GLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCLLSARGAAAVVD 265

Query: 436 TLSTL 440
             S L
Sbjct: 266 AFSKL 270


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,418,889
Number of Sequences: 62578
Number of extensions: 476835
Number of successful extensions: 1006
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 29
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)