Query 012512
Match_columns 462
No_of_seqs 365 out of 3102
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00116 LRR_RI Leucine-rich re 99.9 6.7E-21 1.5E-25 183.7 25.2 245 189-454 73-319 (319)
2 cd00116 LRR_RI Leucine-rich re 99.9 1.8E-20 3.9E-25 180.8 24.9 248 189-458 43-294 (319)
3 KOG1909 Ran GTPase-activating 99.9 7.7E-21 1.7E-25 173.0 16.5 261 177-454 33-310 (382)
4 KOG1909 Ran GTPase-activating 99.9 1.6E-20 3.4E-25 171.0 15.5 249 191-458 24-286 (382)
5 PLN00113 leucine-rich repeat r 99.8 3.7E-19 8.1E-24 196.5 12.0 229 175-456 141-370 (968)
6 PLN00113 leucine-rich repeat r 99.8 6.5E-19 1.4E-23 194.6 12.0 232 175-460 119-350 (968)
7 KOG4194 Membrane glycoprotein 99.7 1.3E-19 2.8E-24 174.6 -4.2 180 176-395 151-331 (873)
8 KOG4194 Membrane glycoprotein 99.7 4.6E-19 1E-23 170.9 -1.6 161 256-455 268-429 (873)
9 KOG0444 Cytoskeletal regulator 99.7 1.6E-18 3.5E-23 168.3 -1.4 216 189-462 95-311 (1255)
10 KOG0444 Cytoskeletal regulator 99.7 9.1E-19 2E-23 170.1 -7.1 235 175-453 104-373 (1255)
11 COG5238 RNA1 Ran GTPase-activa 99.6 2.1E-14 4.6E-19 126.8 17.2 254 189-459 22-289 (388)
12 COG5238 RNA1 Ran GTPase-activa 99.5 1.8E-13 4E-18 121.0 15.5 234 212-460 18-260 (388)
13 KOG0472 Leucine-rich repeat pr 99.5 1.6E-16 3.5E-21 147.2 -9.0 223 178-461 72-294 (565)
14 PRK15370 E3 ubiquitin-protein 99.5 2.5E-14 5.4E-19 149.7 5.5 216 175-456 200-429 (754)
15 KOG4308 LRR-containing protein 99.4 1.8E-14 3.9E-19 143.3 1.5 240 199-457 89-333 (478)
16 PRK15370 E3 ubiquitin-protein 99.4 3.9E-13 8.4E-18 140.8 7.8 195 197-455 199-401 (754)
17 PRK15387 E3 ubiquitin-protein 99.4 3.5E-13 7.6E-18 140.5 6.5 210 175-459 243-462 (788)
18 KOG4308 LRR-containing protein 99.4 5.2E-14 1.1E-18 140.1 -0.4 215 227-459 89-307 (478)
19 KOG0472 Leucine-rich repeat pr 99.4 6.8E-14 1.5E-18 130.0 -0.5 94 351-455 433-541 (565)
20 KOG0618 Serine/threonine phosp 99.4 8E-14 1.7E-18 141.8 -0.9 217 195-453 239-487 (1081)
21 KOG0618 Serine/threonine phosp 99.3 1.3E-13 2.8E-18 140.4 0.3 238 175-456 242-514 (1081)
22 KOG4237 Extracellular matrix p 99.3 3.3E-13 7.1E-18 125.3 0.6 131 174-329 67-199 (498)
23 PRK15387 E3 ubiquitin-protein 99.3 2.9E-12 6.3E-17 133.7 7.3 193 176-456 224-416 (788)
24 KOG3207 Beta-tubulin folding c 99.3 1.8E-12 3.8E-17 122.0 4.0 227 189-457 113-341 (505)
25 PLN03210 Resistant to P. syrin 99.3 1.4E-11 3.1E-16 137.3 9.6 36 353-392 778-813 (1153)
26 KOG2120 SCF ubiquitin ligase, 99.2 1.8E-11 3.9E-16 109.9 5.1 185 198-423 186-373 (419)
27 KOG3207 Beta-tubulin folding c 99.2 6.9E-12 1.5E-16 118.1 2.1 194 192-428 141-341 (505)
28 KOG0617 Ras suppressor protein 99.2 1.2E-13 2.7E-18 114.0 -9.2 157 223-427 31-187 (264)
29 KOG0617 Ras suppressor protein 99.2 2.4E-13 5.1E-18 112.3 -7.9 185 190-425 26-211 (264)
30 KOG4237 Extracellular matrix p 99.1 1.1E-11 2.4E-16 115.3 0.4 210 198-456 68-336 (498)
31 PLN03210 Resistant to P. syrin 99.1 3.1E-10 6.6E-15 126.8 11.7 99 318-451 778-878 (1153)
32 PF14580 LRR_9: Leucine-rich r 99.1 5.6E-11 1.2E-15 102.2 3.8 128 289-449 19-147 (175)
33 KOG2120 SCF ubiquitin ligase, 99.1 8.3E-11 1.8E-15 105.7 4.7 184 225-452 185-373 (419)
34 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.8E-15 104.6 -2.0 86 351-455 327-412 (490)
35 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.9E-14 93.7 3.9 106 257-388 42-147 (175)
36 KOG4341 F-box protein containi 98.9 1.5E-09 3.3E-14 102.0 3.8 72 373-452 364-436 (483)
37 KOG1259 Nischarin, modulator o 98.9 7E-10 1.5E-14 99.9 1.3 130 257-427 284-413 (490)
38 KOG0532 Leucine-rich repeat (L 98.8 1.3E-10 2.7E-15 113.1 -5.0 61 352-427 188-248 (722)
39 COG4886 Leucine-rich repeat (L 98.7 8.9E-09 1.9E-13 102.3 5.5 176 225-457 116-292 (394)
40 KOG4341 F-box protein containi 98.7 3.5E-08 7.5E-13 93.1 6.5 79 351-437 370-451 (483)
41 PLN03150 hypothetical protein; 98.6 1.1E-07 2.4E-12 99.4 8.0 107 320-453 420-526 (623)
42 COG4886 Leucine-rich repeat (L 98.6 4.5E-08 9.8E-13 97.3 4.7 182 190-427 109-291 (394)
43 KOG1859 Leucine-rich repeat pr 98.5 7.1E-09 1.5E-13 103.8 -3.3 189 190-427 102-293 (1096)
44 KOG2982 Uncharacterized conser 98.4 3.4E-07 7.3E-12 82.8 5.3 195 222-457 68-264 (418)
45 KOG0532 Leucine-rich repeat (L 98.4 1.7E-08 3.6E-13 98.6 -3.9 105 258-395 144-248 (722)
46 PLN03150 hypothetical protein; 98.4 8.1E-07 1.7E-11 93.0 7.8 85 291-395 420-504 (623)
47 PF13855 LRR_8: Leucine rich r 98.2 2.1E-07 4.6E-12 65.6 0.0 57 355-424 3-60 (61)
48 KOG3665 ZYG-1-like serine/thre 98.2 4.7E-06 1E-10 87.3 9.6 119 288-428 147-265 (699)
49 KOG0531 Protein phosphatase 1, 98.2 2.2E-07 4.7E-12 92.8 -0.3 223 191-459 89-322 (414)
50 PF13855 LRR_8: Leucine rich r 98.2 4.5E-07 9.8E-12 63.9 1.3 61 318-393 1-61 (61)
51 KOG0531 Protein phosphatase 1, 98.2 9.3E-08 2E-12 95.4 -3.6 36 415-456 234-269 (414)
52 KOG3665 ZYG-1-like serine/thre 98.2 2.7E-06 5.8E-11 89.1 6.7 148 197-374 122-271 (699)
53 KOG2982 Uncharacterized conser 98.2 9.5E-07 2.1E-11 80.0 2.3 198 195-428 69-292 (418)
54 KOG4579 Leucine-rich repeat (L 98.1 5.2E-07 1.1E-11 72.4 -0.9 138 289-460 27-164 (177)
55 KOG4579 Leucine-rich repeat (L 98.1 5.6E-07 1.2E-11 72.2 -0.7 110 258-395 28-137 (177)
56 KOG1947 Leucine rich repeat pr 98.0 2.1E-05 4.5E-10 80.2 9.4 177 196-401 187-382 (482)
57 PF12799 LRR_4: Leucine Rich r 98.0 8.2E-06 1.8E-10 52.9 3.5 37 354-395 2-38 (44)
58 KOG1947 Leucine rich repeat pr 97.9 3.5E-05 7.5E-10 78.6 9.2 187 221-435 184-384 (482)
59 KOG1859 Leucine-rich repeat pr 97.9 4.7E-07 1E-11 91.1 -4.8 177 223-454 107-291 (1096)
60 PF12799 LRR_4: Leucine Rich r 97.7 4.7E-05 1E-09 49.3 3.8 38 381-427 1-38 (44)
61 KOG4658 Apoptotic ATPase [Sign 97.7 3.3E-05 7.1E-10 83.2 4.3 111 195-329 543-653 (889)
62 KOG2123 Uncharacterized conser 97.6 1E-05 2.2E-10 72.8 -1.2 105 288-419 18-123 (388)
63 PRK15386 type III secretion pr 97.5 0.00044 9.5E-09 67.3 8.5 137 223-424 50-188 (426)
64 KOG1644 U2-associated snRNP A' 97.4 0.00017 3.7E-09 62.1 4.0 40 353-395 88-127 (233)
65 KOG2739 Leucine-rich acidic nu 97.2 0.0001 2.2E-09 66.1 0.9 68 349-427 61-130 (260)
66 KOG1644 U2-associated snRNP A' 97.1 0.00053 1.1E-08 59.2 4.3 127 292-451 22-149 (233)
67 KOG4658 Apoptotic ATPase [Sign 97.1 0.00038 8.3E-09 75.2 3.7 154 197-391 523-678 (889)
68 PRK15386 type III secretion pr 96.9 0.00082 1.8E-08 65.4 4.2 143 190-392 45-188 (426)
69 smart00368 LRR_RI Leucine rich 96.8 0.0016 3.4E-08 37.5 3.2 21 382-402 3-23 (28)
70 KOG3864 Uncharacterized conser 96.7 0.00044 9.5E-09 59.7 0.5 83 289-390 101-185 (221)
71 KOG4242 Predicted myosin-I-bin 96.7 0.0047 1E-07 60.0 7.5 173 197-389 214-388 (553)
72 KOG2739 Leucine-rich acidic nu 96.6 0.00086 1.9E-08 60.3 1.6 87 286-388 62-150 (260)
73 KOG2123 Uncharacterized conser 96.6 0.00023 4.9E-09 64.4 -2.3 108 314-448 15-123 (388)
74 smart00368 LRR_RI Leucine rich 96.5 0.0043 9.3E-08 35.7 3.4 26 413-438 2-27 (28)
75 KOG3864 Uncharacterized conser 96.5 0.0012 2.5E-08 57.2 1.2 84 319-424 102-187 (221)
76 PF13516 LRR_6: Leucine Rich r 96.3 0.0023 4.9E-08 35.3 1.4 21 381-401 2-22 (24)
77 PF13516 LRR_6: Leucine Rich r 95.5 0.0091 2E-07 32.9 1.6 23 412-434 1-23 (24)
78 KOG4242 Predicted myosin-I-bin 95.5 0.011 2.4E-07 57.6 3.1 232 197-458 241-484 (553)
79 KOG3735 Tropomodulin and leiom 95.4 0.02 4.2E-07 53.5 4.4 115 314-439 194-311 (353)
80 smart00367 LRR_CC Leucine-rich 93.9 0.069 1.5E-06 30.0 2.6 21 381-401 2-23 (26)
81 smart00367 LRR_CC Leucine-rich 93.8 0.05 1.1E-06 30.5 1.9 23 352-374 1-24 (26)
82 KOG3735 Tropomodulin and leiom 93.0 0.19 4.2E-06 47.0 5.4 125 287-423 196-323 (353)
83 PF00560 LRR_1: Leucine Rich R 91.9 0.056 1.2E-06 29.0 0.3 16 444-460 2-17 (22)
84 PF13504 LRR_7: Leucine rich r 89.7 0.26 5.6E-06 24.5 1.5 13 443-455 2-14 (17)
85 PF07525 SOCS_box: SOCS box; 86.4 0.65 1.4E-05 29.1 2.2 16 4-19 1-16 (40)
86 cd03716 SOCS_ASB_like SOCS (su 84.9 1.7 3.6E-05 27.6 3.6 20 3-22 2-21 (42)
87 KOG3763 mRNA export factor TAP 84.3 1.7 3.7E-05 43.8 5.1 15 413-427 270-284 (585)
88 cd03717 SOCS_SOCS_like SOCS (s 81.8 2.5 5.4E-05 26.3 3.4 17 3-19 2-18 (39)
89 cd03587 SOCS SOCS (suppressors 80.2 3 6.6E-05 26.2 3.5 18 3-20 1-18 (41)
90 cd03718 SOCS_SSB1_4 SOCS (supp 78.0 4.1 8.8E-05 25.9 3.5 18 3-20 2-19 (42)
91 PF13306 LRR_5: Leucine rich r 77.8 3 6.6E-05 33.5 3.8 104 286-422 9-112 (129)
92 cd03735 SOCS_SOCS1 SOCS (suppr 76.7 6 0.00013 25.2 3.9 17 3-19 2-18 (43)
93 smart00369 LRR_TYP Leucine-ric 73.0 3.3 7.2E-05 22.8 2.0 15 381-395 2-16 (26)
94 smart00370 LRR Leucine-rich re 73.0 3.3 7.2E-05 22.8 2.0 15 381-395 2-16 (26)
95 smart00365 LRR_SD22 Leucine-ri 72.1 3.7 7.9E-05 23.0 1.9 15 381-395 2-16 (26)
96 cd03723 SOCS_ASB4_ASB18 SOCS ( 70.6 7 0.00015 25.6 3.3 18 3-20 2-19 (48)
97 PF13306 LRR_5: Leucine rich r 70.6 4.5 9.8E-05 32.5 3.1 83 284-391 30-113 (129)
98 cd03729 SOCS_ASB13 SOCS (suppr 69.4 8.1 0.00018 24.5 3.3 17 3-19 2-18 (42)
99 KOG0473 Leucine-rich repeat pr 68.6 0.092 2E-06 46.7 -7.6 84 318-427 42-125 (326)
100 cd03734 SOCS_CIS1 SOCS (suppre 68.1 12 0.00025 23.6 3.8 17 3-19 2-18 (41)
101 cd03742 SOCS_Rab40 SOCS (suppr 66.0 7.1 0.00015 24.9 2.5 17 3-19 2-18 (43)
102 KOG3763 mRNA export factor TAP 65.9 4.7 0.0001 40.8 2.6 13 444-456 272-284 (585)
103 cd03721 SOCS_ASB2 SOCS (suppre 65.7 7.8 0.00017 25.0 2.7 17 3-19 2-18 (45)
104 smart00364 LRR_BAC Leucine-ric 65.4 4.3 9.4E-05 22.7 1.3 14 443-456 3-16 (26)
105 cd03726 SOCS_ASB7 SOCS (suppre 65.3 9.5 0.00021 24.6 3.0 19 3-21 2-20 (45)
106 cd03743 SOCS_SSB4 SOCS (suppre 65.0 9.3 0.0002 24.2 2.9 19 3-21 2-20 (42)
107 cd03737 SOCS_SOCS3 SOCS (suppr 64.2 10 0.00022 24.0 3.0 27 4-34 3-29 (42)
108 smart00253 SOCS suppressors of 64.1 12 0.00025 23.9 3.3 17 3-19 6-22 (43)
109 cd03739 SOCS_SOCS5 SOCS (suppr 63.9 15 0.00031 25.0 3.8 16 4-19 3-18 (57)
110 cd03727 SOCS_ASB8 SOCS (suppre 63.0 7.6 0.00016 24.7 2.2 18 2-19 1-18 (43)
111 PF06881 Elongin_A: RNA polyme 62.4 33 0.00072 26.9 6.4 67 26-112 1-70 (109)
112 cd03736 SOCS_SOCS2 SOCS (suppr 61.1 18 0.0004 22.7 3.7 16 3-18 2-17 (41)
113 cd03733 SOCS_WSB_SWIP SOCS (su 56.7 17 0.00037 22.6 3.0 16 4-19 3-18 (39)
114 cd03722 SOCS_ASB3 SOCS (suppre 56.0 14 0.00029 24.6 2.6 18 2-19 1-18 (51)
115 cd03730 SOCS_ASB14 SOCS (suppr 51.7 17 0.00037 24.8 2.6 17 3-19 2-18 (57)
116 cd03725 SOCS_ASB6 SOCS (suppre 49.0 28 0.00061 22.3 3.2 18 2-19 1-18 (44)
117 cd03740 SOCS_SOCS6 SOCS (suppr 45.7 25 0.00054 22.2 2.5 17 3-19 2-18 (41)
118 cd03741 SOCS_SOCS7 SOCS (suppr 45.6 43 0.00094 22.0 3.7 17 3-19 2-18 (49)
119 cd03738 SOCS_SOCS4 SOCS (suppr 42.0 47 0.001 22.5 3.5 16 4-19 3-18 (56)
120 KOG0473 Leucine-rich repeat pr 41.2 0.42 9E-06 42.7 -8.1 84 353-456 42-125 (326)
121 cd03724 SOCS_ASB5 SOCS (suppre 38.2 36 0.00078 21.6 2.4 20 2-21 1-20 (42)
122 cd03746 SOCS_WSB1_SWIP1 SOCS ( 35.3 43 0.00093 21.0 2.4 16 4-19 3-18 (40)
123 PF00646 F-box: F-box domain; 32.4 38 0.00083 21.6 2.0 26 28-53 2-27 (48)
124 cd03720 SOCS_ASB1 SOCS (suppre 30.8 50 0.0011 20.9 2.2 18 2-19 1-18 (42)
125 PF12937 F-box-like: F-box-lik 29.6 53 0.0011 20.9 2.3 23 30-52 2-24 (47)
126 cd03719 SOCS_SSB2 SOCS (suppre 29.0 53 0.0012 20.8 2.1 20 2-21 1-20 (42)
127 PF07723 LRR_2: Leucine Rich R 28.4 40 0.00086 18.7 1.3 12 355-366 2-13 (26)
128 cd03731 SOCS_ASB15 SOCS (suppr 28.0 60 0.0013 22.1 2.3 17 3-19 2-18 (56)
129 PRK09718 hypothetical protein; 27.5 30 0.00064 34.8 1.1 15 413-427 228-242 (512)
130 cd03745 SOCS_WSB2_SWIP2 SOCS ( 26.9 89 0.0019 19.5 2.7 15 5-19 4-18 (39)
131 cd03744 SOCS_SSB1 SOCS (suppre 25.6 71 0.0015 20.2 2.2 19 3-21 2-20 (42)
132 KOG1665 AFH1-interacting prote 22.3 72 0.0016 28.5 2.3 13 290-302 197-209 (302)
No 1
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.88 E-value=6.7e-21 Score=183.74 Aligned_cols=245 Identities=25% Similarity=0.270 Sum_probs=190.0
Q ss_pred hhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccC-CCccEEecCCC
Q 012512 189 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI-HKIENLSIDIS 267 (462)
Q Consensus 189 ~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~-~~L~~L~l~~~ 267 (462)
....+..+++|++|++++|.+.......+..+... ++|++|++++|.+++.+...+...+.. + ++|++|++++|
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~----~~~~L~~L~L~~n 147 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKD----LPPALEKLVLGRN 147 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHh----CCCCceEEEcCCC
Confidence 44556678899999999988765554455555555 779999999999988777777666655 4 78999999999
Q ss_pred CCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhh
Q 012512 268 SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG 347 (462)
Q Consensus 268 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~ 347 (462)
.++. .....+...+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.+++ .+...+...+.
T Consensus 148 ~l~~----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~----~~~~~l~~~~~ 218 (319)
T cd00116 148 RLEG----ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLDLNNNGLTD----EGASALAETLA 218 (319)
T ss_pred cCCc----hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEeccCCccCh----HHHHHHHHHhc
Confidence 9885 2223566677778899999999999998887777766544 3799999999998874 22233334444
Q ss_pred CCCCCCCccEEEccCCCCCcchHHHHHHHhhc-CCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCC
Q 012512 348 AGKSLQSLRLLNLRGNNLCKADARDLGSALVH-IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426 (462)
Q Consensus 348 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~ 426 (462)
.+++|++|++++|.+++.++..+...+.. .++|++|++++|.+++.|...+.. .+...++|+.+++++|.++
T Consensus 219 ---~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~----~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 219 ---SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE----VLAEKESLLELDLRGNKFG 291 (319)
T ss_pred ---ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH----HHhcCCCccEEECCCCCCc
Confidence 56889999999999998887777766543 678999999999999888877764 4455589999999999999
Q ss_pred hhhHHHHHHHHhcCCCCCcEEEccCCCC
Q 012512 427 GRGVSQLLDTLSTLRRPPTSLSIADNNL 454 (462)
Q Consensus 427 ~~~~~~l~~~l~~l~~~L~~L~Ls~N~l 454 (462)
+.++..++..+....+.|++||+.+|.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 9999999999887436799999998875
No 2
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.88 E-value=1.8e-20 Score=180.77 Aligned_cols=248 Identities=21% Similarity=0.247 Sum_probs=193.9
Q ss_pred hhhhhhcCCCcCEEEeccCCCh---HHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecC
Q 012512 189 ETCQLLRESKLQSLVLRWIRFE---EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID 265 (462)
Q Consensus 189 ~~~~l~~~~~L~~L~L~~~~~~---~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~ 265 (462)
+...+...+.+++++++++... ..+..+...+. .+++|++|++++|.+.......+.... . .++|++|+++
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~-~----~~~L~~L~ls 116 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT-KGCGLQELDLSDNALGPDGCGVLESLL-R----SSSLQELKLN 116 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH-hcCceeEEEccCCCCChhHHHHHHHHh-c----cCcccEEEee
Confidence 4455667788999999988765 33444434434 488999999999999866555554321 1 1459999999
Q ss_pred CCCCCCCCCchhHHHHHHhhcCC-CCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHH
Q 012512 266 ISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLF 344 (462)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 344 (462)
+|.+... ....+...+..+ ++|+.|++++|.++..+...+...+ ..+.+|++|++++|.+++. +...++.
T Consensus 117 ~~~~~~~----~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~----~~~~l~~ 187 (319)
T cd00116 117 NNGLGDR----GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL-RANRDLKELNLANNGIGDA----GIRALAE 187 (319)
T ss_pred CCccchH----HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH-HhCCCcCEEECcCCCCchH----HHHHHHH
Confidence 9998762 223556677777 8999999999999987777766654 4458899999999999852 2222334
Q ss_pred hhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012512 345 SLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 424 (462)
Q Consensus 345 ~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 424 (462)
.+. .+++|+.|++++|.+++.++..+...+..+++|++|++++|.+++.++..++..+ ....+.|++|++++|.
T Consensus 188 ~l~---~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~---~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 188 GLK---ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL---LSPNISLLTLSLSCND 261 (319)
T ss_pred HHH---hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH---hccCCCceEEEccCCC
Confidence 444 4479999999999999999999999999999999999999999998888877533 2245899999999999
Q ss_pred CChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012512 425 LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 425 l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
+++.+...+.+.+... ++|+++|+++|.+++++
T Consensus 262 i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 262 ITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEG 294 (319)
T ss_pred CCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHH
Confidence 9999999999999884 67999999999999874
No 3
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.86 E-value=7.7e-21 Score=173.01 Aligned_cols=261 Identities=19% Similarity=0.213 Sum_probs=156.7
Q ss_pred ceeeeccccchH-----hhhhhhcCCCcCEEEeccCC-------ChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHH
Q 012512 177 RCLRLQNALCVE-----ETCQLLRESKLQSLVLRWIR-------FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEG 244 (462)
Q Consensus 177 ~~l~l~~~~~~~-----~~~~l~~~~~L~~L~L~~~~-------~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~ 244 (462)
..++++++.+.+ +...+.+.++|++.+++.-- +...+..+.+.+.. ++.|++|+||.|-++..+++.
T Consensus 33 ~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~-~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 33 TKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLG-CPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred EEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhc-CCceeEeeccccccCccchHH
Confidence 334445544443 22333445566666665432 11222333333333 456777777777777666666
Q ss_pred HHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHH-----hhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCC
Q 012512 245 ICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS-----FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS 319 (462)
Q Consensus 245 l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-----~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 319 (462)
+...+.+ +..|++|.|.+|.+...+...+...+.. ....-++|+++...+|++.+.+...++..+... +.
T Consensus 112 l~~ll~s----~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~-~~ 186 (382)
T KOG1909|consen 112 LEELLSS----CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH-PT 186 (382)
T ss_pred HHHHHHh----ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc-cc
Confidence 6666555 5667777777776665444332222221 223344677777777777666666666655443 66
Q ss_pred ccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHH
Q 012512 320 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIR 399 (462)
Q Consensus 320 L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~ 399 (462)
|+.+.++.|.|. +.+...+...+. +|+.|+.|||.+|-++..|..++..+++.+++|++|+++++.+.+.|..
T Consensus 187 leevr~~qN~I~----~eG~~al~eal~---~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 187 LEEVRLSQNGIR----PEGVTALAEALE---HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred cceEEEeccccc----CchhHHHHHHHH---hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 777777777665 233334444444 5567777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCC
Q 012512 400 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 454 (462)
Q Consensus 400 ~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l 454 (462)
++..++... .++|+.|.+.+|.|+..++..++.++.. .+.|+.|+|++|.+
T Consensus 260 a~~~al~~~---~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 260 AFVDALKES---APSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcc---CCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 777655433 3677777777777777777777766666 45577777777777
No 4
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.85 E-value=1.6e-20 Score=170.96 Aligned_cols=249 Identities=23% Similarity=0.286 Sum_probs=199.8
Q ss_pred hhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCC---CCChhHHH---HHHHHHhcccccCCCccEEec
Q 012512 191 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC---KLSPSFVE---GICRSLCSKRKRIHKIENLSI 264 (462)
Q Consensus 191 ~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~---~l~~~~~~---~l~~~l~~~~~~~~~L~~L~l 264 (462)
..+.....+++++|++|.+.............+.++|+..+++.- +..+..++ .+..+|.. +++|++++|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~----~~~L~~ldL 99 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLG----CPKLQKLDL 99 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhc----CCceeEeec
Confidence 344466788999999999776655555555555789999999874 33334443 33444433 669999999
Q ss_pred CCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHh--------hCCCCccEEEecCCCCCCcccc
Q 012512 265 DISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL--------EASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~--------~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
|+|.|... .+..+...++++.+|++|.|.+|.++..+-..+..+|+ ...++|+++..+.|++. +
T Consensus 100 SDNA~G~~----g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle----n 171 (382)
T KOG1909|consen 100 SDNAFGPK----GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE----N 171 (382)
T ss_pred cccccCcc----chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc----c
Confidence 99999884 44578888888999999999999999887777665443 34578999999999988 4
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCcc
Q 012512 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 416 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 416 (462)
.+...++..+. .+++|+.+.++.|.|...|+..+..++.+|++|+.|||.+|.++..|..++. ..+..++.|+
T Consensus 172 ~ga~~~A~~~~---~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La----kaL~s~~~L~ 244 (382)
T KOG1909|consen 172 GGATALAEAFQ---SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA----KALSSWPHLR 244 (382)
T ss_pred ccHHHHHHHHH---hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH----HHhcccchhe
Confidence 66677777777 4479999999999999999999999999999999999999999999988888 4556668999
Q ss_pred EEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012512 417 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 417 ~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
.|++++|.+...|+.++.+++...+++|++|.+.+|.|+..+
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 999999999999999999999987788999999999987654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=3.7e-19 Score=196.50 Aligned_cols=229 Identities=23% Similarity=0.225 Sum_probs=113.2
Q ss_pred ccceeeeccccch-HhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012512 175 YARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~-~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++... ..+..+..+++|++|++++|.+....+.. +.++++|++|+|++|.+....+..+..
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~l~~------ 210 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFLTLASNQLVGQIPRELGQ------ 210 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh----hhhCcCCCeeeccCCCCcCcCChHHcC------
Confidence 3455666665543 24455666677777777766644332211 234666677777666665444433322
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc
Q 012512 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 333 (462)
+.+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+.
T Consensus 211 --l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 211 --MKSLKWIYLGYNNLSG--------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-----GNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred --cCCccEEECcCCccCC--------cCChhHhcCCCCCEEECcCceeccccChhH-----hCCCCCCEEECcCCeeecc
Confidence 4556666666665554 344445555566666666665554444333 2345556666655555543
Q ss_pred ccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCC
Q 012512 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 413 (462)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 413 (462)
.| ..+. ++.+|+.|++++|.++. .++..+.++++|+.|++++|.+... .| ..+..++
T Consensus 276 ~p--------~~l~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~-----~~---~~~~~l~ 332 (968)
T PLN00113 276 IP--------PSIF---SLQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFTGK-----IP---VALTSLP 332 (968)
T ss_pred Cc--------hhHh---hccCcCEEECcCCeecc----CCChhHcCCCCCcEEECCCCccCCc-----CC---hhHhcCC
Confidence 33 2222 33455555555555543 2344444555555555555554431 22 2233344
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012512 414 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 414 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
+|+.|++++|.++.. ++..+.. ..+|+.|++++|++++
T Consensus 333 ~L~~L~L~~n~l~~~----~p~~l~~-~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 333 RLQVLQLWSNKFSGE----IPKNLGK-HNNLTVLDLSTNNLTG 370 (968)
T ss_pred CCCEEECcCCCCcCc----CChHHhC-CCCCcEEECCCCeeEe
Confidence 455555555544432 2333333 2234444444444443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=6.5e-19 Score=194.59 Aligned_cols=232 Identities=22% Similarity=0.233 Sum_probs=163.9
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012512 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.++.+++.++....... ...+++|++|+|++|.+....... +..+++|++|++++|.+....+..+..
T Consensus 119 ~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~~~~------- 186 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPND----IGSFSSLKVLDLGGNVLVGKIPNSLTN------- 186 (968)
T ss_pred CCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCChH----HhcCCCCCEEECccCcccccCChhhhh-------
Confidence 44555665554432111 134567777777777655332221 345778888888888776555555544
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcc
Q 012512 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 334 (462)
+.+|++|++++|.+.. .++..+..+++|++|+|++|.+.+..+..+ ..+++|++|++++|.+++..
T Consensus 187 -l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 187 -LTSLEFLTLASNQLVG--------QIPRELGQMKSLKWIYLGYNNLSGEIPYEI-----GGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred -CcCCCeeeccCCCCcC--------cCChHHcCcCCccEEECcCCccCCcCChhH-----hcCCCCCEEECcCceecccc
Confidence 6778888888887766 466677778888888888888877666654 34678888888888887654
Q ss_pred cccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC
Q 012512 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 335 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
| ..+. ++++|+.|++++|++++ .++..+..+++|++|++++|.++.. +| ..+..+++
T Consensus 253 p--------~~l~---~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p---~~~~~l~~ 309 (968)
T PLN00113 253 P--------SSLG---NLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSGE-----IP---ELVIQLQN 309 (968)
T ss_pred C--------hhHh---CCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCeeccC-----CC---hhHcCCCC
Confidence 4 4555 55788889999888876 4677788888899999998887653 44 45667789
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcccc
Q 012512 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 460 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~~ 460 (462)
|+.|++++|.++.. ++..+..+ ++|+.|++++|.+++.+|.
T Consensus 310 L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 310 LEILHLFSNNFTGK----IPVALTSL-PRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred CcEEECCCCccCCc----CChhHhcC-CCCCEEECcCCCCcCcCCh
Confidence 99999999988765 55666664 5599999999999877663
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.3e-19 Score=174.60 Aligned_cols=180 Identities=19% Similarity=0.148 Sum_probs=90.6
Q ss_pred cceeeeccccchHhhhhhh-cCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012512 176 ARCLRLQNALCVEETCQLL-RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 176 ~~~l~l~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
++.++++.+.+.+++..-+ ...++++|+|++|.++..-.+- +.++.+|..|.|+.|.++......+..
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL~tlkLsrNrittLp~r~Fk~------- 219 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSLLTLKLSRNRITTLPQRSFKR------- 219 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc----ccccchheeeecccCcccccCHHHhhh-------
Confidence 3556666665555443333 4466777777777654432221 234556777777777776555444433
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcc
Q 012512 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 334 (462)
+++|+.|+|..|.+-.. -...|.++++|+.|.|..|.+..- -.+.+..+.++++|+|+.|++....
T Consensus 220 -L~~L~~LdLnrN~iriv--------e~ltFqgL~Sl~nlklqrN~I~kL-----~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 220 -LPKLESLDLNRNRIRIV--------EGLTFQGLPSLQNLKLQRNDISKL-----DDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred -cchhhhhhccccceeee--------hhhhhcCchhhhhhhhhhcCcccc-----cCcceeeecccceeecccchhhhhh
Confidence 66777777777766441 122334444555555554444321 1111223455555555555554211
Q ss_pred cccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCc
Q 012512 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 335 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 395 (462)
. .++. +++.|+.|+|+.|.|.. .-+.+++.++.|++|+|++|.|+.
T Consensus 286 ~--------g~lf---gLt~L~~L~lS~NaI~r----ih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 286 E--------GWLF---GLTSLEQLDLSYNAIQR----IHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred c--------cccc---ccchhhhhccchhhhhe----eecchhhhcccceeEecccccccc
Confidence 1 1122 44555555555555544 223345555555555555555443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=4.6e-19 Score=170.86 Aligned_cols=161 Identities=25% Similarity=0.225 Sum_probs=118.3
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012512 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
+.++++|+|+.|++.. --...+-++++|+.|+||+|.|....++.+. .+.+|++|+|++|+|+...+
T Consensus 268 l~kme~l~L~~N~l~~--------vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-----ftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQA--------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-----FTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred ecccceeecccchhhh--------hhcccccccchhhhhccchhhhheeecchhh-----hcccceeEeccccccccCCh
Confidence 6778888888888766 3344566788999999999988776666552 25789999999999885333
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC
Q 012512 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
..+. .+..|++|+|++|+|+. +.+ +|..+++|++|||++|.|+-- ++.-...+..++.
T Consensus 335 --------~sf~---~L~~Le~LnLs~Nsi~~-----l~e~af~~lssL~~LdLr~N~ls~~-----IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 335 --------GSFR---VLSQLEELNLSHNSIDH-----LAEGAFVGLSSLHKLDLRSNELSWC-----IEDAAVAFNGLPS 393 (873)
T ss_pred --------hHHH---HHHHhhhhcccccchHH-----HHhhHHHHhhhhhhhcCcCCeEEEE-----Eecchhhhccchh
Confidence 3333 55789999999999985 444 688889999999999986531 1100034556799
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012512 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
|++|++.+|+|... --.++..+ ..|++|||.+|.|-
T Consensus 394 LrkL~l~gNqlk~I----~krAfsgl-~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 394 LRKLRLTGNQLKSI----PKRAFSGL-EALEHLDLGDNAIA 429 (873)
T ss_pred hhheeecCceeeec----chhhhccC-cccceecCCCCcce
Confidence 99999999998774 23456664 44999999999874
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=1.6e-18 Score=168.34 Aligned_cols=216 Identities=23% Similarity=0.203 Sum_probs=159.6
Q ss_pred hhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCC
Q 012512 189 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS 268 (462)
Q Consensus 189 ~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~ 268 (462)
+|..++++..|..|+||+|.+......+ ..-+++-.|+||+|.|....-..+.. +..|-.|+|++|.
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~L-----E~AKn~iVLNLS~N~IetIPn~lfin--------LtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNL-----EYAKNSIVLNLSYNNIETIPNSLFIN--------LTDLLFLDLSNNR 161 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhh-----hhhcCcEEEEcccCccccCCchHHHh--------hHhHhhhccccch
Confidence 5677888888888999888876655543 33568888899998886433333322 4556788888888
Q ss_pred CCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCC-CcccccCcccHHHhhh
Q 012512 269 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG-GWLSKYDRSGPLFSLG 347 (462)
Q Consensus 269 ~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~l~~~l~ 347 (462)
+.. ++..++.+..|++|+|++|.+.....+.+ +.+++|+.|.+|+.+-+ +. ++..+.
T Consensus 162 Le~---------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-----PsmtsL~vLhms~TqRTl~N--------~Ptsld 219 (1255)
T KOG0444|consen 162 LEM---------LPPQIRRLSMLQTLKLSNNPLNHFQLRQL-----PSMTSLSVLHMSNTQRTLDN--------IPTSLD 219 (1255)
T ss_pred hhh---------cCHHHHHHhhhhhhhcCCChhhHHHHhcC-----ccchhhhhhhcccccchhhc--------CCCchh
Confidence 744 77778888888999999998877666654 55778888888887633 22 224455
Q ss_pred CCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012512 348 AGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 348 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
.+.+|..+|||.|++.. +|..+-...+|+.|+||+|.|+. +. .......+|++|++|.|+++.
T Consensus 220 ---~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrLNLS~N~ite------L~---~~~~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 220 ---DLHNLRDVDLSENNLPI-----VPECLYKLRNLRRLNLSGNKITE------LN---MTEGEWENLETLNLSRNQLTV 282 (1255)
T ss_pred ---hhhhhhhccccccCCCc-----chHHHhhhhhhheeccCcCceee------ee---ccHHHHhhhhhhccccchhcc
Confidence 55788888899988884 88888888889999999998876 22 122233688888899998888
Q ss_pred hhHHHHHHHHhcCCCCCcEEEccCCCCCCccccCC
Q 012512 428 RGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG 462 (462)
Q Consensus 428 ~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 462 (462)
++++++++.+ |+.|.+.+|+++-+|..||
T Consensus 283 -----LP~avcKL~k-L~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 283 -----LPDAVCKLTK-LTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred -----chHHHhhhHH-HHHHHhccCcccccCCccc
Confidence 7888888644 8888888888888888776
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=9.1e-19 Score=170.05 Aligned_cols=235 Identities=22% Similarity=0.218 Sum_probs=144.9
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHH--------
Q 012512 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGIC-------- 246 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~-------- 246 (462)
.+..++++++...+.|..+..-+++-.|+||+|++......++ -++..|-.||||+|++....++.-.
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf----inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLF----INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHH----HhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence 4556677777777777777777777777777777665554442 2344455666666655422221100
Q ss_pred --------HHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCC
Q 012512 247 --------RSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS 318 (462)
Q Consensus 247 --------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 318 (462)
-.|+. ...+.+|+.|++++.+-+. ..++..+..+.+|..+|+|.|.+.. .|..+.. +.
T Consensus 180 Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRTl-------~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~-----l~ 245 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRTL-------DNIPTSLDDLHNLRDVDLSENNLPI-VPECLYK-----LR 245 (1255)
T ss_pred cCCChhhHHHHhc-Cccchhhhhhhcccccchh-------hcCCCchhhhhhhhhccccccCCCc-chHHHhh-----hh
Confidence 00000 0114445555555544322 2455556666778888888887765 5665533 57
Q ss_pred CccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhH
Q 012512 319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGI 398 (462)
Q Consensus 319 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~ 398 (462)
+|+.|+||+|.|+. +....+ ...+|++|+||.|+++ .+|.++..++.|+.|...+|++.-+|+
T Consensus 246 ~LrrLNLS~N~ite---------L~~~~~---~W~~lEtLNlSrNQLt-----~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITE---------LNMTEG---EWENLETLNLSRNQLT-----VLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred hhheeccCcCceee---------eeccHH---HHhhhhhhccccchhc-----cchHHHhhhHHHHHHHhccCcccccCC
Confidence 88888888888874 222223 2356777777777777 377777777777777777777666543
Q ss_pred Hh-------------------HHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCC
Q 012512 399 RS-------------------LIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 453 (462)
Q Consensus 399 ~~-------------------l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~ 453 (462)
.. ++| ..++.|..|++|.|++|++-. +++++.-+ +.|+.||+..|+
T Consensus 309 PSGIGKL~~Levf~aanN~LElVP---EglcRC~kL~kL~L~~NrLiT-----LPeaIHlL-~~l~vLDlreNp 373 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLELVP---EGLCRCVKLQKLKLDHNRLIT-----LPEAIHLL-PDLKVLDLRENP 373 (1255)
T ss_pred ccchhhhhhhHHHHhhccccccCc---hhhhhhHHHHHhcccccceee-----chhhhhhc-CCcceeeccCCc
Confidence 21 133 567777888888888888766 67777664 448888888874
No 11
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.63 E-value=2.1e-14 Score=126.84 Aligned_cols=254 Identities=20% Similarity=0.220 Sum_probs=195.2
Q ss_pred hhhhhhcCCCcCEEEeccCCChHH-HHHHHHHHHhcCCCccEEEccCCCC---ChhHHHHHHHHHhcccccCCCccEEec
Q 012512 189 ETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKL---SPSFVEGICRSLCSKRKRIHKIENLSI 264 (462)
Q Consensus 189 ~~~~l~~~~~L~~L~L~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~~~l---~~~~~~~l~~~l~~~~~~~~~L~~L~l 264 (462)
....+.....+.+++||+|.+... ...++..+. +-++|+..+++.-.. .+..+..+. .|.....+|++|+..+|
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~L~-~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSNLV-MLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHHHH-HHHHHHhcCCcceeeec
Confidence 344555678899999999997655 444544444 468999999987432 333333321 22233345899999999
Q ss_pred CCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHh--------hCCCCccEEEecCCCCCCcccc
Q 012512 265 DISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL--------EASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~--------~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
|+|.|.. ..++.+...+++.++|++|.+++|.++...-..+..+++ .+-+.|+..+...|++. .
T Consensus 100 SDNAfg~----~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle----n 171 (388)
T COG5238 100 SDNAFGS----EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE----N 171 (388)
T ss_pred cccccCc----ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc----c
Confidence 9999987 556689999999999999999999998766666665444 23578999999999987 3
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCc
Q 012512 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 415 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 415 (462)
.+.+..+..+.+ ...|+++.+..|.|..+|+..+.- .+..+++|+.||+.+|.++..|-..+. ..++..+.|
T Consensus 172 gs~~~~a~~l~s---h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La----~al~~W~~l 244 (388)
T COG5238 172 GSKELSAALLES---HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA----DALCEWNLL 244 (388)
T ss_pred CcHHHHHHHHHh---hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH----HHhcccchh
Confidence 455555556663 268999999999999999987654 677899999999999999999988887 556777889
Q ss_pred cEEEccCCCCChhhHHHHHHHHhcC-CCCCcEEEccCCCCCCccc
Q 012512 416 VELYLENCELSGRGVSQLLDTLSTL-RRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 416 ~~L~L~~n~l~~~~~~~l~~~l~~l-~~~L~~L~Ls~N~l~~~~~ 459 (462)
+.|++.+|-++..|+.++...+... .++|..|-..+|.+.+.+.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence 9999999999999999988887642 3568999999998866543
No 12
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.55 E-value=1.8e-13 Score=120.97 Aligned_cols=234 Identities=16% Similarity=0.151 Sum_probs=185.8
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHH---HHHHhhcCC
Q 012512 212 HVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV---ELVSFLSSG 288 (462)
Q Consensus 212 ~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~l~~~l~~l 288 (462)
.....+..+.. +..+.+++||+|.|+.+.+++++..+.+ -.+|+..++++-.. ......+++ .+.+++..|
T Consensus 18 Dvk~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~----~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkc 91 (388)
T COG5238 18 DVKGVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIAN----VRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKC 91 (388)
T ss_pred hhhHHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhh----hcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcC
Confidence 34444444454 7899999999999999999999998877 46788888876532 222222322 345567788
Q ss_pred CCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhh------CCCCCCCccEEEccC
Q 012512 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG------AGKSLQSLRLLNLRG 362 (462)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~------~~~~l~~L~~L~L~~ 362 (462)
+.|+..+||.|-++...+..+...+.+. +.|++|.|++|.+. ++...-+..++. ..++-+.|++.....
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~-t~l~HL~l~NnGlG----p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSS-TDLVHLKLNNNGLG----PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcC-CCceeEEeecCCCC----ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 9999999999999999998888776554 89999999999987 455555554332 334557899999999
Q ss_pred CCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCC
Q 012512 363 NNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 442 (462)
Q Consensus 363 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~ 442 (462)
|++..-..+.....+..-..|+++.+..|.|..+|+..++- ..+.++.+|+.|+|.+|-++..|...++.+++. -+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~---~gl~y~~~LevLDlqDNtft~~gS~~La~al~~-W~ 242 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAF---LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE-WN 242 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHH---HHHHHhCcceeeeccccchhhhhHHHHHHHhcc-cc
Confidence 99987777667777776679999999999999999998875 455677999999999999999999999999998 45
Q ss_pred CCcEEEccCCCCCCcccc
Q 012512 443 PPTSLSIADNNLGRFCAN 460 (462)
Q Consensus 443 ~L~~L~Ls~N~l~~~~~~ 460 (462)
.|+.|.+..|-++.+|..
T Consensus 243 ~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 243 LLRELRLNDCLLSNEGVK 260 (388)
T ss_pred hhhhccccchhhccccHH
Confidence 589999999999887754
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=1.6e-16 Score=147.22 Aligned_cols=223 Identities=22% Similarity=0.244 Sum_probs=154.2
Q ss_pred eeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCC
Q 012512 178 CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH 257 (462)
Q Consensus 178 ~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~ 257 (462)
.+.+.++...+.+.++.++..++.+++++|++....... .....+..++.++|.+.. ....+.. +.
T Consensus 72 vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-----~s~~~l~~l~~s~n~~~e-l~~~i~~--------~~ 137 (565)
T KOG0472|consen 72 VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-----GSLISLVKLDCSSNELKE-LPDSIGR--------LL 137 (565)
T ss_pred EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-----hhhhhhhhhhccccceee-cCchHHH--------Hh
Confidence 345666666777788888888888888888765554433 345678888888876652 2222322 45
Q ss_pred CccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccccc
Q 012512 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (462)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 337 (462)
.++.++..+|++.. ++..+..+.+|..|++.+|++...-+..+. +..|++||+..|.++.
T Consensus 138 ~l~dl~~~~N~i~s---------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~------m~~L~~ld~~~N~L~t----- 197 (565)
T KOG0472|consen 138 DLEDLDATNNQISS---------LPEDMVNLSKLSKLDLEGNKLKALPENHIA------MKRLKHLDCNSNLLET----- 197 (565)
T ss_pred hhhhhhcccccccc---------CchHHHHHHHHHHhhccccchhhCCHHHHH------HHHHHhcccchhhhhc-----
Confidence 57777777777765 566666677888888888888776666553 3678888888887764
Q ss_pred CcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccE
Q 012512 338 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 417 (462)
Q Consensus 338 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~ 417 (462)
++..++ ++.+|..|+|..|+|.. +| .|.+|+.|++|.++.|+|.- +|+ +...++.++..
T Consensus 198 ----lP~~lg---~l~~L~~LyL~~Nki~~-----lP-ef~gcs~L~Elh~g~N~i~~------lpa--e~~~~L~~l~v 256 (565)
T KOG0472|consen 198 ----LPPELG---GLESLELLYLRRNKIRF-----LP-EFPGCSLLKELHVGENQIEM------LPA--EHLKHLNSLLV 256 (565)
T ss_pred ----CChhhc---chhhhHHHHhhhccccc-----CC-CCCccHHHHHHHhcccHHHh------hHH--HHhccccccee
Confidence 345555 55778888888888773 44 67777788888888887764 554 55567777788
Q ss_pred EEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccccC
Q 012512 418 LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 461 (462)
Q Consensus 418 L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 461 (462)
|||.+|++.+ ++..+..+ ++|.+||+|+|.|++--+..
T Consensus 257 LDLRdNklke-----~Pde~clL-rsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 257 LDLRDNKLKE-----VPDEICLL-RSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred eecccccccc-----CchHHHHh-hhhhhhcccCCccccCCccc
Confidence 8888888777 56666653 45778888888777655443
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=2.5e-14 Score=149.70 Aligned_cols=216 Identities=17% Similarity=0.198 Sum_probs=109.0
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012512 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.+..+.+.++.+..++..+. .+|++|++++|.+......+ ..+|+.|+|++|.+.. .+..+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-------~~~L~~L~Ls~N~L~~-LP~~l--------- 260 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-------PDTIQEMELSINRITE-LPERL--------- 260 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-------hccccEEECcCCccCc-CChhH---------
Confidence 34455555555554444433 36777777776654322211 1356677777766652 12211
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHH--------------hhCCCCc
Q 012512 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL--------------LEASSSL 320 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l--------------~~~~~~L 320 (462)
..+|+.|++++|.+.. ++..+. ++|++|++++|++.. .+..+...+ ....++|
T Consensus 261 -~s~L~~L~Ls~N~L~~---------LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL 327 (754)
T PRK15370 261 -PSALQSLDLFHNKISC---------LPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGL 327 (754)
T ss_pred -hCCCCEEECcCCccCc---------cccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccc
Confidence 1346666666666543 221111 356666666666553 111110000 0001345
Q ss_pred cEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHh
Q 012512 321 SILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRS 400 (462)
Q Consensus 321 ~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~ 400 (462)
+.|++++|.++. ++..+. ++|+.|++++|+|+. ++..+. ++|+.|++++|.|+.
T Consensus 328 ~~L~Ls~N~Lt~---------LP~~l~-----~sL~~L~Ls~N~L~~-----LP~~lp--~~L~~LdLs~N~Lt~----- 381 (754)
T PRK15370 328 KTLEAGENALTS---------LPASLP-----PELQVLDVSKNQITV-----LPETLP--PTITTLDVSRNALTN----- 381 (754)
T ss_pred eeccccCCcccc---------CChhhc-----CcccEEECCCCCCCc-----CChhhc--CCcCEEECCCCcCCC-----
Confidence 555555555543 112221 467777777777663 444332 467777777777664
Q ss_pred HHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012512 401 LIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 401 l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
+| ..+. ..|+.|++++|+|+.. ...++..... .+.+..|++.+|+|+.
T Consensus 382 -LP---~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~-~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 382 -LP---ENLP--AALQIMQASRNNLVRL-PESLPHFRGE-GPQPTRIIVEYNPFSE 429 (754)
T ss_pred -CC---HhHH--HHHHHHhhccCCcccC-chhHHHHhhc-CCCccEEEeeCCCccH
Confidence 33 1121 3567777777777641 1112222222 2457788888888764
No 15
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.45 E-value=1.8e-14 Score=143.30 Aligned_cols=240 Identities=25% Similarity=0.285 Sum_probs=196.4
Q ss_pred cCEEEeccCCChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchh
Q 012512 199 LQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (462)
Q Consensus 199 L~~L~L~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (462)
+.++.|.+|.+... ...++..+. .+.+|+.|++++|.+++.+...++..+... -+.+++|.+..|.++..++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~-t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~---~~~l~~L~l~~c~l~~~g~~-- 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALK-TLPTLGQLDLSGNNLGDEGARLLCEGLRLP---QCLLQTLELVSCSLTSEGAA-- 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhc-ccccHhHhhcccCCCccHhHHHHHhhcccc---hHHHHHHHhhcccccccchH--
Confidence 67788888876544 444444444 478999999999999999999999888774 26788899999999886655
Q ss_pred HHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhh---CCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCC
Q 012512 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (462)
Q Consensus 278 ~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~---~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 354 (462)
.+...+..+..++.++++.|.+...+...++.++.. +.+++++|.+++|.++ ..+++.+...+.... ..
T Consensus 163 --~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t----~~~c~~l~~~l~~~~--~~ 234 (478)
T KOG4308|consen 163 --PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT----SSSCALLDEVLASGE--SL 234 (478)
T ss_pred --HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC----hHHHHHHHHHHhccc--hh
Confidence 788888888899999999999988888888888875 6789999999999998 577778888887654 43
Q ss_pred ccEEEccCCCCCcchHHHHHHHhhcC-CCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH
Q 012512 355 LRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 433 (462)
Q Consensus 355 L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 433 (462)
+..|++..|.+.|.|++.+.+.+... ..+++++++.|.|++.|...+. ..+.++..++.|.+++|.+++.+...+
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~----~~l~~~~~l~~l~l~~n~l~~~~~~~~ 310 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA----EVLVSCRQLEELSLSNNPLTDYGVELL 310 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH----HHHhhhHHHHHhhcccCccccHHHHHH
Confidence 77799999999999999999999988 7899999999999999988887 456667899999999999999999999
Q ss_pred HHHHhcCCCCCcEEEccCCCCCCc
Q 012512 434 LDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 434 ~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
.+.+.. ...+..+-+.++.....
T Consensus 311 ~~~l~~-~~~~~~~~l~~~~~~~~ 333 (478)
T KOG4308|consen 311 LEALER-KTPLLHLVLGGTGKGTR 333 (478)
T ss_pred HHHhhh-cccchhhhccccCccch
Confidence 988887 45577777776655443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=3.9e-13 Score=140.84 Aligned_cols=195 Identities=22% Similarity=0.272 Sum_probs=122.6
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCch
Q 012512 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (462)
++++.|++++|.+......+ ..+|++|++++|.++.. +..+ ..+|+.|++++|.+..
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-------~~nL~~L~Ls~N~LtsL-P~~l----------~~~L~~L~Ls~N~L~~----- 255 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-------QGNIKTLYANSNQLTSI-PATL----------PDTIQEMELSINRITE----- 255 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-------ccCCCEEECCCCccccC-Chhh----------hccccEEECcCCccCc-----
Confidence 46899999999877544332 25899999999988732 2222 2468999999999876
Q ss_pred hHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHh-hhC-----C-
Q 012512 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS-LGA-----G- 349 (462)
Q Consensus 277 ~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~-l~~-----~- 349 (462)
++..+. .+|+.|++++|++.. .+..+ ..+|+.|++++|.++.. |......+... +.. +
T Consensus 256 ----LP~~l~--s~L~~L~Ls~N~L~~-LP~~l-------~~sL~~L~Ls~N~Lt~L-P~~lp~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 256 ----LPERLP--SALQSLDLFHNKISC-LPENL-------PEELRYLSVYDNSIRTL-PAHLPSGITHLNVQSNSLTALP 320 (754)
T ss_pred ----CChhHh--CCCCEEECcCCccCc-ccccc-------CCCCcEEECCCCccccC-cccchhhHHHHHhcCCccccCC
Confidence 222222 479999999999985 44432 25799999999998852 10000000000 000 0
Q ss_pred -CCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChh
Q 012512 350 -KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR 428 (462)
Q Consensus 350 -~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~ 428 (462)
.-.++|+.|++++|.++. ++..+. ++|+.|++++|.|+. +| ..+. ++|+.|++++|+|+.
T Consensus 321 ~~l~~sL~~L~Ls~N~Lt~-----LP~~l~--~sL~~L~Ls~N~L~~------LP---~~lp--~~L~~LdLs~N~Lt~- 381 (754)
T PRK15370 321 ETLPPGLKTLEAGENALTS-----LPASLP--PELQVLDVSKNQITV------LP---ETLP--PTITTLDVSRNALTN- 381 (754)
T ss_pred ccccccceeccccCCcccc-----CChhhc--CcccEEECCCCCCCc------CC---hhhc--CCcCEEECCCCcCCC-
Confidence 011456777777776663 444332 577777777777764 43 2221 577778888887775
Q ss_pred hHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012512 429 GVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 429 ~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
++..+.. +|+.|++++|+|.
T Consensus 382 ----LP~~l~~---sL~~LdLs~N~L~ 401 (754)
T PRK15370 382 ----LPENLPA---ALQIMQASRNNLV 401 (754)
T ss_pred ----CCHhHHH---HHHHHhhccCCcc
Confidence 4444432 3777788888776
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=3.5e-13 Score=140.46 Aligned_cols=210 Identities=20% Similarity=0.148 Sum_probs=121.9
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012512 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.++.|++.++.+..++. ..++|++|++++|.+.... .+ ..+|+.|++++|+++... . .
T Consensus 243 ~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~~Lp-~l-------p~~L~~L~Ls~N~Lt~LP-~--------~-- 300 (788)
T PRK15387 243 ELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLP-AL-------PSGLCKLWIFGNQLTSLP-V--------L-- 300 (788)
T ss_pred CCcEEEecCCccCcccC---cccccceeeccCCchhhhh-hc-------hhhcCEEECcCCcccccc-c--------c--
Confidence 55677777776665442 1357788888887654322 11 246777777777776321 1 0
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHH---------HhhcCC-CCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEE
Q 012512 255 RIHKIENLSIDISSFIENCPSSVVVELV---------SFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILD 324 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~---------~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 324 (462)
.++|+.|++++|.+...... +..+. ..+..+ .+|++|+|++|+|.. .+. + ..+|+.|+
T Consensus 301 -p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~-l-------p~~L~~L~ 368 (788)
T PRK15387 301 -PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPT-L-------PSELYKLW 368 (788)
T ss_pred -ccccceeECCCCccccCCCC--cccccccccccCccccccccccccceEecCCCccCC-CCC-C-------Ccccceeh
Confidence 35677777777776652110 00000 000001 134444444444443 111 0 13344444
Q ss_pred ecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHH
Q 012512 325 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY 404 (462)
Q Consensus 325 Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~ 404 (462)
+++|.++. ++. ...+|+.|++++|+|+. ++.. .++|+.|++++|.|+. +|.
T Consensus 369 Ls~N~L~~---------LP~------l~~~L~~LdLs~N~Lt~-----LP~l---~s~L~~LdLS~N~Lss------IP~ 419 (788)
T PRK15387 369 AYNNRLTS---------LPA------LPSGLKELIVSGNRLTS-----LPVL---PSELKELMVSGNRLTS------LPM 419 (788)
T ss_pred hhcccccc---------Ccc------cccccceEEecCCcccC-----CCCc---ccCCCEEEccCCcCCC------CCc
Confidence 44444442 111 11468888888888874 4432 2578889999998875 542
Q ss_pred HHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012512 405 FVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 405 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
. ..+|+.|++++|+|+. +++.+..+ ..|+.|+|++|+|++..+
T Consensus 420 ---l---~~~L~~L~Ls~NqLt~-----LP~sl~~L-~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 420 ---L---PSGLLSLSVYRNQLTR-----LPESLIHL-SSETTVNLEGNPLSERTL 462 (788)
T ss_pred ---c---hhhhhhhhhccCcccc-----cChHHhhc-cCCCeEECCCCCCCchHH
Confidence 2 2568889999999986 77777774 459999999999987654
No 18
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.38 E-value=5.2e-14 Score=140.08 Aligned_cols=215 Identities=22% Similarity=0.262 Sum_probs=186.8
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCC-CCCCEEecCCCCCChhh
Q 012512 227 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDF 305 (462)
Q Consensus 227 L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l-~~L~~L~Ls~n~l~~~~ 305 (462)
+..|.|.+|.+.+.+.+.++..+.. +.+|+.|++++|.+.+.+. ..+...+... +.|++|++..|.++..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t----~~~L~~L~l~~n~l~~~g~----~~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKT----LPTLGQLDLSGNNLGDEGA----RLLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcc----cccHhHhhcccCCCccHhH----HHHHhhcccchHHHHHHHhhcccccccc
Confidence 7888999999999999999999888 7899999999999997444 4777777776 68999999999999999
Q ss_pred HHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhC-CCCCCCccEEEccCCCCCcchHHHHHHHhhcCCC-C
Q 012512 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA-GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-L 383 (462)
Q Consensus 306 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L 383 (462)
...+...+.. ...++.++++.|.+. ..+...+...+.. +...+++++|++.+|.++...+..+..++...++ +
T Consensus 161 ~~~l~~~L~~-~~~l~~l~l~~n~l~----~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~ 235 (478)
T KOG4308|consen 161 AAPLAAVLEK-NEHLTELDLSLNGLI----ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLL 235 (478)
T ss_pred hHHHHHHHhc-ccchhHHHHHhcccc----hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhh
Confidence 9999999877 689999999999987 3444555566664 2235899999999999999999999999999888 8
Q ss_pred CEEeCCCCCCCchhHHhHHHHHHhhcCCC-CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012512 384 EILDISDNTIEDDGIRSLIPYFVQASERC-NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 384 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
.+|+++.|.+.|.|++.+.+.+ ... +.++.++++.|.|++.|+..+++.+.. ++.++++.++.|.+++.+.
T Consensus 236 ~el~l~~n~l~d~g~~~L~~~l----~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~-~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 236 RELDLASNKLGDVGVEKLLPCL----SVLSETLRVLDLSRNSITEKGVRDLAEVLVS-CRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHHHhcCcchHHHHHHHHHh----cccchhhhhhhhhcCCccccchHHHHHHHhh-hHHHHHhhcccCccccHHH
Confidence 8999999999999999999754 333 789999999999999999999999998 5689999999999988653
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.37 E-value=6.8e-14 Score=129.98 Aligned_cols=94 Identities=22% Similarity=0.262 Sum_probs=71.2
Q ss_pred CCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCch--------hHHhHHHH------H-HhhcCCCCCc
Q 012512 351 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD--------GIRSLIPY------F-VQASERCNPL 415 (462)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~--------g~~~l~~~------l-~~~l~~~~~L 415 (462)
.+++|..|+|++|-+.+ +|..++....|+.||+|.|++..- +.+.++.. + .+.+..+.+|
T Consensus 433 ~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred hhhcceeeecccchhhh-----cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 44788999999998886 888888888899999999876431 11111100 0 0235667899
Q ss_pred cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012512 416 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 416 ~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
..|+|.+|.+.. ++..+.+ ..+|++|++++|+|.
T Consensus 508 ~tLDL~nNdlq~-----IPp~Lgn-mtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQQ-----IPPILGN-MTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchhh-----CChhhcc-ccceeEEEecCCccC
Confidence 999999999887 7888988 577999999999997
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=8e-14 Score=141.84 Aligned_cols=217 Identities=21% Similarity=0.219 Sum_probs=144.1
Q ss_pred cCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHH---------------HHhcccccCCCc
Q 012512 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR---------------SLCSKRKRIHKI 259 (462)
Q Consensus 195 ~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~---------------~l~~~~~~~~~L 259 (462)
.-.+++.+++++|.+.... .. ...+.+|+.++..+|.+.. .+..+.. .+.....+..+|
T Consensus 239 ~p~nl~~~dis~n~l~~lp-~w----i~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL 312 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLP-EW----IGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSL 312 (1081)
T ss_pred ccccceeeecchhhhhcch-HH----HHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCCCccccccee
Confidence 3467888888877655443 22 4557888888888887742 2222110 111111235678
Q ss_pred cEEecCCCCCCCCCCchhHH--HHHHhh-------------c--CCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccE
Q 012512 260 ENLSIDISSFIENCPSSVVV--ELVSFL-------------S--SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSI 322 (462)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~--~l~~~l-------------~--~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 322 (462)
++|++..|.+...-...+.. .-...+ + .++.|+.|.+.+|.+++..+..+ .+..+|+.
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l-----~~~~hLKV 387 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL-----VNFKHLKV 387 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh-----ccccceee
Confidence 88899888876533321100 000000 0 13457778888888888777655 45688999
Q ss_pred EEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHH
Q 012512 323 LDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 402 (462)
Q Consensus 323 L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~ 402 (462)
|+|++|++..... ..+. ++..|++|+||+|+++ .|+..+..++.|++|...+|.|.. .
T Consensus 388 LhLsyNrL~~fpa--------s~~~---kle~LeeL~LSGNkL~-----~Lp~tva~~~~L~tL~ahsN~l~~------f 445 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPA--------SKLR---KLEELEELNLSGNKLT-----TLPDTVANLGRLHTLRAHSNQLLS------F 445 (1081)
T ss_pred eeecccccccCCH--------HHHh---chHHhHHHhcccchhh-----hhhHHHHhhhhhHHHhhcCCceee------c
Confidence 9999998874222 2333 6678899999999998 488888899999999999999876 6
Q ss_pred HHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCC
Q 012512 403 PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 453 (462)
Q Consensus 403 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~ 453 (462)
|. +..++.|+.+|++.|+++... +.++... ++|++||++||.
T Consensus 446 Pe----~~~l~qL~~lDlS~N~L~~~~---l~~~~p~--p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 446 PE----LAQLPQLKVLDLSCNNLSEVT---LPEALPS--PNLKYLDLSGNT 487 (1081)
T ss_pred hh----hhhcCcceEEecccchhhhhh---hhhhCCC--cccceeeccCCc
Confidence 63 345689999999999998853 3344432 569999999996
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-13 Score=140.41 Aligned_cols=238 Identities=17% Similarity=0.165 Sum_probs=167.5
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHH---------------H---HHhcCCCccEEEccCCC
Q 012512 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCK---------------L---LIQNSETLASLEFLHCK 236 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~---------------~---l~~~~~~L~~L~L~~~~ 236 (462)
.+.++++..+....++..+..+.+|+.++.++|.+......+.. + ...+.+.|++|+|..|.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 55778888888888888889999999999999986443332211 0 11135789999999998
Q ss_pred CChhHHHHHHH------HHhcc-----------cccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCC
Q 012512 237 LSPSFVEGICR------SLCSK-----------RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC 299 (462)
Q Consensus 237 l~~~~~~~l~~------~l~~~-----------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n 299 (462)
+.......+.. .+... ...++.|+.|++.+|.+++ .....+.+.++|+.|+|++|
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd--------~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD--------SCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc--------cchhhhccccceeeeeeccc
Confidence 76433221111 11000 0114568999999999998 78889999999999999999
Q ss_pred CCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhc
Q 012512 300 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH 379 (462)
Q Consensus 300 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~ 379 (462)
+|+.-....+ .++..|++|+||+|+++. ++..+. .+..|++|...+|+|.. +| .+..
T Consensus 394 rL~~fpas~~-----~kle~LeeL~LSGNkL~~---------Lp~tva---~~~~L~tL~ahsN~l~~-----fP-e~~~ 450 (1081)
T KOG0618|consen 394 RLNSFPASKL-----RKLEELEELNLSGNKLTT---------LPDTVA---NLGRLHTLRAHSNQLLS-----FP-ELAQ 450 (1081)
T ss_pred ccccCCHHHH-----hchHHhHHHhcccchhhh---------hhHHHH---hhhhhHHHhhcCCceee-----ch-hhhh
Confidence 9886333332 446899999999999985 666666 66899999999999984 66 7889
Q ss_pred CCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012512 380 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 380 ~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
.++|+.+|+|.|.++...+....| -++|+.||++||.=... -.+.+.. .+++...+++-|+.++
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p--------~p~LkyLdlSGN~~l~~----d~~~l~~-l~~l~~~~i~~~~~~d 514 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALP--------SPNLKYLDLSGNTRLVF----DHKTLKV-LKSLSQMDITLNNTPD 514 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCC--------CcccceeeccCCccccc----chhhhHH-hhhhhheecccCCCCc
Confidence 999999999999998743222221 28999999999972111 1123333 2346667776664444
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=3.3e-13 Score=125.28 Aligned_cols=131 Identities=14% Similarity=0.083 Sum_probs=94.6
Q ss_pred cccceeeeccccchHhhhhhh-cCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccC-CCCChhHHHHHHHHHhc
Q 012512 174 HYARCLRLQNALCVEETCQLL-RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCS 251 (462)
Q Consensus 174 ~~~~~l~l~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~-~~l~~~~~~~l~~~l~~ 251 (462)
...-.+++.++.+..++...+ .+.+|+.|+||+|.+....++. +++++.+.+|-+.+ |+|++.....+..
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A----F~GL~~l~~Lvlyg~NkI~~l~k~~F~g---- 138 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA----FKGLASLLSLVLYGNNKITDLPKGAFGG---- 138 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh----hhhhHhhhHHHhhcCCchhhhhhhHhhh----
Confidence 344567899999998887666 7799999999999887665554 44566777776666 8998655555544
Q ss_pred ccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCC
Q 012512 252 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (462)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 329 (462)
+..++.|.++-|++.- ...+.+..+++|..|.+.+|.+.. ++++.+..+..++++.+..|.
T Consensus 139 ----L~slqrLllNan~i~C--------ir~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 139 ----LSSLQRLLLNANHINC--------IRQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ----HHHHHHHhcChhhhcc--------hhHHHHHHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCc
Confidence 5668888888888766 677888888999999988886543 333334445667777666665
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.31 E-value=2.9e-12 Score=133.69 Aligned_cols=193 Identities=18% Similarity=0.114 Sum_probs=113.9
Q ss_pred cceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccc
Q 012512 176 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 255 (462)
Q Consensus 176 ~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~ 255 (462)
++.+.+.++.+..++. ..++|++|++++|.+..... ..++|++|++++|.+.... . +
T Consensus 224 L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~--------lp~sL~~L~Ls~N~L~~Lp-~-l---------- 280 (788)
T PRK15387 224 ITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--------LPPGLLELSIFSNPLTHLP-A-L---------- 280 (788)
T ss_pred CCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccC--------cccccceeeccCCchhhhh-h-c----------
Confidence 3445555555443332 23567777777766553221 1246677777777665211 1 1
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012512 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
..+|+.|++++|.+.. ++. ..++|+.|++++|++.. .+. + ..+|+.|++++|.+++ +|
T Consensus 281 p~~L~~L~Ls~N~Lt~---------LP~---~p~~L~~LdLS~N~L~~-Lp~-l-------p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 281 PSGLCKLWIFGNQLTS---------LPV---LPPGLQELSVSDNQLAS-LPA-L-------PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred hhhcCEEECcCCcccc---------ccc---cccccceeECCCCcccc-CCC-C-------cccccccccccCcccc-cc
Confidence 2446677777777654 221 12567777777777765 111 1 2457777777777763 11
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCc
Q 012512 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 415 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 415 (462)
. +. .+|+.|+|++|+|+. +|.. .++|+.|++++|.|+. +|. . ..+|
T Consensus 339 --------~----lp--~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~L~Ls~N~L~~------LP~---l---~~~L 384 (788)
T PRK15387 339 --------T----LP--SGLQELSVSDNQLAS-----LPTL---PSELYKLWAYNNRLTS------LPA---L---PSGL 384 (788)
T ss_pred --------c----cc--cccceEecCCCccCC-----CCCC---Ccccceehhhcccccc------Ccc---c---cccc
Confidence 1 11 478899999998885 4432 2467788888888775 542 2 2568
Q ss_pred cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012512 416 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 416 ~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
+.|++++|+|+. ++.. .++|+.|++++|.|+.
T Consensus 385 ~~LdLs~N~Lt~-----LP~l----~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 385 KELIVSGNRLTS-----LPVL----PSELKELMVSGNRLTS 416 (788)
T ss_pred ceEEecCCcccC-----CCCc----ccCCCEEEccCCcCCC
Confidence 888888888775 2221 2347777887777764
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.8e-12 Score=122.01 Aligned_cols=227 Identities=21% Similarity=0.190 Sum_probs=141.0
Q ss_pred hhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCCh-hHHHHHHHHHhcccccCCCccEEecCCC
Q 012512 189 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLSIDIS 267 (462)
Q Consensus 189 ~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~-~~~~~l~~~l~~~~~~~~~L~~L~l~~~ 267 (462)
+...=.++.+|+++.|.++........ .....+++++.|||++|-+.. ..+..+++. +++|+.|+++.|
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eq-------Lp~Le~LNls~N 182 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQ-------LPSLENLNLSSN 182 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHh-------cccchhcccccc
Confidence 333444566778888877654332211 224568888888888886654 333445554 677888888888
Q ss_pred CCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCC-CCCcccccCcccHHHhh
Q 012512 268 SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSL 346 (462)
Q Consensus 268 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l 346 (462)
.+..-....... .++.|+.|.|+.|.++...+..+.. ..++|+.|+|..|. +.- ..
T Consensus 183 rl~~~~~s~~~~-------~l~~lK~L~l~~CGls~k~V~~~~~----~fPsl~~L~L~~N~~~~~-----------~~- 239 (505)
T KOG3207|consen 183 RLSNFISSNTTL-------LLSHLKQLVLNSCGLSWKDVQWILL----TFPSLEVLYLEANEIILI-----------KA- 239 (505)
T ss_pred cccCCccccchh-------hhhhhheEEeccCCCCHHHHHHHHH----hCCcHHHhhhhcccccce-----------ec-
Confidence 765522221111 3468888899999988877777654 35888999998885 221 00
Q ss_pred hCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCC
Q 012512 347 GAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426 (462)
Q Consensus 347 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~ 426 (462)
.....+++|++|||++|++-+. ........++.|+.|+++.+.|++-..-. +..+ ......++|+.|++..|+|.
T Consensus 240 ~~~~i~~~L~~LdLs~N~li~~---~~~~~~~~l~~L~~Lnls~tgi~si~~~d-~~s~-~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 240 TSTKILQTLQELDLSNNNLIDF---DQGYKVGTLPGLNQLNLSSTGIASIAEPD-VESL-DKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred chhhhhhHHhhccccCCccccc---ccccccccccchhhhhccccCcchhcCCC-ccch-hhhcccccceeeecccCccc
Confidence 1111337888899998887763 23466778888888888888877621000 0000 11234478889999999886
Q ss_pred hhhHHHHHHHHhcCCCCCcEEEccCCCCCCc
Q 012512 427 GRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 427 ~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
+.. -...+.. ..+|+.|.+..|+|+-+
T Consensus 315 ~w~---sl~~l~~-l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 315 DWR---SLNHLRT-LENLKHLRITLNYLNKE 341 (505)
T ss_pred ccc---ccchhhc-cchhhhhhccccccccc
Confidence 632 1233434 24478888888887654
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.25 E-value=1.4e-11 Score=137.35 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=25.7
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCC
Q 012512 353 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 392 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 392 (462)
++|+.|+|++|.... .+|..++++++|+.|++++|.
T Consensus 778 ~sL~~L~Ls~n~~l~----~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 778 PSLTRLFLSDIPSLV----ELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred ccchheeCCCCCCcc----ccChhhhCCCCCCEEECCCCC
Confidence 467777777775443 367777888888888888764
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.8e-11 Score=109.90 Aligned_cols=185 Identities=23% Similarity=0.246 Sum_probs=92.7
Q ss_pred CcCEEEeccCCChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCC-CCCCCCCc
Q 012512 198 KLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPS 275 (462)
Q Consensus 198 ~L~~L~L~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~ 275 (462)
.+|+|||+...++.. ... +...|..|+.|.|.++++++.....+++ +.+|..|+++.+ .|++
T Consensus 186 Rlq~lDLS~s~it~stl~~----iLs~C~kLk~lSlEg~~LdD~I~~~iAk--------N~~L~~lnlsm~sG~t~---- 249 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHG----ILSQCSKLKNLSLEGLRLDDPIVNTIAK--------NSNLVRLNLSMCSGFTE---- 249 (419)
T ss_pred hhHHhhcchhheeHHHHHH----HHHHHHhhhhccccccccCcHHHHHHhc--------cccceeeccccccccch----
Confidence 466666665544322 221 1334566666666666666665555555 566666666655 2333
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCc
Q 012512 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (462)
Q Consensus 276 ~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L 355 (462)
..+.-.+.+++.|..|+|++|.+....+..+...+ ..+|+.|+|+|+.-. +....+..... .++.|
T Consensus 250 ---n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi---se~l~~LNlsG~rrn-----l~~sh~~tL~~---rcp~l 315 (419)
T KOG2120|consen 250 ---NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI---SETLTQLNLSGYRRN-----LQKSHLSTLVR---RCPNL 315 (419)
T ss_pred ---hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh---chhhhhhhhhhhHhh-----hhhhHHHHHHH---hCCce
Confidence 23444455566666666666666555554444322 245666666665411 00011212222 44566
Q ss_pred cEEEccCC-CCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCC
Q 012512 356 RLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 423 (462)
Q Consensus 356 ~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n 423 (462)
.+|||++| .+++ ....++.+++.|++|.++.+..- .|...-.+...+.|.+|++.+|
T Consensus 316 ~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i-------~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 316 VHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDI-------IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccccccccCc----hHHHHHHhcchheeeehhhhcCC-------ChHHeeeeccCcceEEEEeccc
Confidence 66666666 3333 23444555666666666665522 1110022334456666666665
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.9e-12 Score=118.11 Aligned_cols=194 Identities=19% Similarity=0.154 Sum_probs=137.8
Q ss_pred hhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCC
Q 012512 192 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIE 271 (462)
Q Consensus 192 ~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~ 271 (462)
....++++++|+|+.|-+.. +..++. +...+++|+.|+|+.|++....-...... ..+|+.|.++.|.++.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~n-w~~v~~-i~eqLp~Le~LNls~Nrl~~~~~s~~~~~-------l~~lK~L~l~~CGls~ 211 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHN-WFPVLK-IAEQLPSLENLNLSSNRLSNFISSNTTLL-------LSHLKQLVLNSCGLSW 211 (505)
T ss_pred hhhhCCcceeecchhhhHHh-HHHHHH-HHHhcccchhcccccccccCCccccchhh-------hhhhheEEeccCCCCH
Confidence 44577899999999985443 333333 34569999999999997753222211111 5779999999999987
Q ss_pred CCCchhHHHHHHhhcCCCCCCEEecCCCC-CC-hhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCC
Q 012512 272 NCPSSVVVELVSFLSSGRSLCSLKLRHCH-LD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 349 (462)
Q Consensus 272 ~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~-l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~ 349 (462)
......+..+|+|+.|+|.+|. +. ..... ..++.|+.|||++|.+-+.. .+...
T Consensus 212 -------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~-------~i~~~L~~LdLs~N~li~~~----------~~~~~ 267 (505)
T KOG3207|consen 212 -------KDVQWILLTFPSLEVLYLEANEIILIKATST-------KILQTLQELDLSNNNLIDFD----------QGYKV 267 (505)
T ss_pred -------HHHHHHHHhCCcHHHhhhhcccccceecchh-------hhhhHHhhccccCCcccccc----------ccccc
Confidence 4677788889999999999994 21 11222 22478999999999976521 11223
Q ss_pred CCCCCccEEEccCCCCCcchHHHHHHH-----hhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012512 350 KSLQSLRLLNLRGNNLCKADARDLGSA-----LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 424 (462)
Q Consensus 350 ~~l~~L~~L~L~~n~l~~~~~~~l~~~-----l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 424 (462)
..++.|..|+++.|+|++-. +++. ....++|+.|+++.|+|.+ .+.+ ..+..+.+|..|....|.
T Consensus 268 ~~l~~L~~Lnls~tgi~si~---~~d~~s~~kt~~f~kL~~L~i~~N~I~~------w~sl-~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIA---EPDVESLDKTHTFPKLEYLNISENNIRD------WRSL-NHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccchhhhhccccCcchhc---CCCccchhhhcccccceeeecccCcccc------cccc-chhhccchhhhhhccccc
Confidence 36689999999999988632 2222 4567899999999999987 5544 455666888888888888
Q ss_pred CChh
Q 012512 425 LSGR 428 (462)
Q Consensus 425 l~~~ 428 (462)
++.+
T Consensus 338 ln~e 341 (505)
T KOG3207|consen 338 LNKE 341 (505)
T ss_pred cccc
Confidence 7663
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=1.2e-13 Score=113.98 Aligned_cols=157 Identities=24% Similarity=0.288 Sum_probs=122.5
Q ss_pred cCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCC
Q 012512 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (462)
Q Consensus 223 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~ 302 (462)
.+.+++.|.|+||+++ ..+..+++ +.+|+.|++.+|++.+ ++..++++++|+.|+++-|++.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~--------l~nlevln~~nnqie~---------lp~~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE--------LKNLEVLNLSNNQIEE---------LPTSISSLPKLRILNVGMNRLN 92 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH--------hhhhhhhhcccchhhh---------cChhhhhchhhhheecchhhhh
Confidence 4788999999999987 56666666 7889999999998865 7888888999999999988775
Q ss_pred hhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCC
Q 012512 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 382 (462)
Q Consensus 303 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 382 (462)
. .++. ++..+.|+.|||+.|++... .++..+. .+.+|+-|.|++|.+. .+|+.++++++
T Consensus 93 ~-lprg-----fgs~p~levldltynnl~e~-------~lpgnff---~m~tlralyl~dndfe-----~lp~dvg~lt~ 151 (264)
T KOG0617|consen 93 I-LPRG-----FGSFPALEVLDLTYNNLNEN-------SLPGNFF---YMTTLRALYLGDNDFE-----ILPPDVGKLTN 151 (264)
T ss_pred c-Cccc-----cCCCchhhhhhccccccccc-------cCCcchh---HHHHHHHHHhcCCCcc-----cCChhhhhhcc
Confidence 5 4443 35568899999999988742 1223333 4478888888888776 58889999999
Q ss_pred CCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012512 383 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 383 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
|+.|.+..|.+-. +| ..++.+++|++|++.+|+++-
T Consensus 152 lqil~lrdndll~------lp---keig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 152 LQILSLRDNDLLS------LP---KEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred eeEEeeccCchhh------Cc---HHHHHHHHHHHHhcccceeee
Confidence 9999999998543 55 666777899999999999876
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.15 E-value=2.4e-13 Score=112.35 Aligned_cols=185 Identities=19% Similarity=0.205 Sum_probs=137.7
Q ss_pred hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCC
Q 012512 190 TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF 269 (462)
Q Consensus 190 ~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~ 269 (462)
...++..++++.|.||+|++....+.+ ..+.+|+.|++.+|++.+ .+..+.+ +++|+.|+++-|.+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppni-----a~l~nlevln~~nnqie~-lp~~iss--------l~klr~lnvgmnrl 91 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNI-----AELKNLEVLNLSNNQIEE-LPTSISS--------LPKLRILNVGMNRL 91 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcH-----HHhhhhhhhhcccchhhh-cChhhhh--------chhhhheecchhhh
Confidence 345666788899999999987665554 346899999999999873 3333333 78899999998887
Q ss_pred CCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHH-HHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhC
Q 012512 270 IENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR-MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 348 (462)
Q Consensus 270 ~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~ 348 (462)
.. ++..+++++.|+.|||++|++++.... .++. +..|+.|+|+.|.+.- ++..++
T Consensus 92 ~~---------lprgfgs~p~levldltynnl~e~~lpgnff~-----m~tlralyl~dndfe~---------lp~dvg- 147 (264)
T KOG0617|consen 92 NI---------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-----MTTLRALYLGDNDFEI---------LPPDVG- 147 (264)
T ss_pred hc---------CccccCCCchhhhhhccccccccccCCcchhH-----HHHHHHHHhcCCCccc---------CChhhh-
Confidence 65 788889999999999999999875433 2221 3678889999998763 445666
Q ss_pred CCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCC
Q 012512 349 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL 425 (462)
Q Consensus 349 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l 425 (462)
.+++|+.|.+.+|.+-. +|..++.+.+|++|.+.+|+++- +|.-...+....+=+...+++|..
T Consensus 148 --~lt~lqil~lrdndll~-----lpkeig~lt~lrelhiqgnrl~v------lppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 148 --KLTNLQILSLRDNDLLS-----LPKEIGDLTRLRELHIQGNRLTV------LPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred --hhcceeEEeeccCchhh-----CcHHHHHHHHHHHHhcccceeee------cChhhhhhhhhhhHHHHhhhhCCC
Confidence 66899999999998874 99999999999999999999874 331112222223445566777764
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-11 Score=115.27 Aligned_cols=210 Identities=21% Similarity=0.207 Sum_probs=135.1
Q ss_pred CcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCC-CCCCCCCCch
Q 012512 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDI-SSFIENCPSS 276 (462)
Q Consensus 198 ~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~ 276 (462)
...+++|..|.+....... ++.+++|++|||++|.|+...+.++.. +.++.+|-+.+ |+|++
T Consensus 68 ~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~G--------L~~l~~Lvlyg~NkI~~----- 130 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKG--------LASLLSLVLYGNNKITD----- 130 (498)
T ss_pred cceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhh--------hHhhhHHHhhcCCchhh-----
Confidence 4678999999887776655 567889999999999999888887765 45566665555 88877
Q ss_pred hHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCcc
Q 012512 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (462)
Q Consensus 277 ~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~ 356 (462)
.-...|.++..|+.|.+.-|++.-.-...+ ..++.+..|.+-.|.+...- . +.+..+..++
T Consensus 131 ---l~k~~F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~i~---------~--~tf~~l~~i~ 191 (498)
T KOG4237|consen 131 ---LPKGAFGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQSIC---------K--GTFQGLAAIK 191 (498)
T ss_pred ---hhhhHhhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhhhc---------c--ccccchhccc
Confidence 556678888999999999998876433333 33578888888888765210 0 0111222333
Q ss_pred EEEccCCC------------------CCcchH-------------------------HHH---------------HHHhh
Q 012512 357 LLNLRGNN------------------LCKADA-------------------------RDL---------------GSALV 378 (462)
Q Consensus 357 ~L~L~~n~------------------l~~~~~-------------------------~~l---------------~~~l~ 378 (462)
++.+..|. +.-.|+ +.+ ...|+
T Consensus 192 tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~ 271 (498)
T KOG4237|consen 192 TLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFK 271 (498)
T ss_pred hHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHh
Confidence 33333222 111111 001 12366
Q ss_pred cCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012512 379 HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 379 ~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
.+++|++|+|++|.|+. +.. ..+.....+++|.|..|+|... -..++..+ ..|+.|+|.+|+|+-
T Consensus 272 ~L~~L~~lnlsnN~i~~------i~~--~aFe~~a~l~eL~L~~N~l~~v----~~~~f~~l-s~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITR------IED--GAFEGAAELQELYLTRNKLEFV----SSGMFQGL-SGLKTLSLYDNQITT 336 (498)
T ss_pred hcccceEeccCCCccch------hhh--hhhcchhhhhhhhcCcchHHHH----HHHhhhcc-ccceeeeecCCeeEE
Confidence 77888888888888876 322 5566667777777777776553 12233442 337778888887754
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.11 E-value=3.1e-10 Score=126.80 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=51.3
Q ss_pred CCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCC-CCcchHHHHHHHhhcCCCCCEEeCCCCC-CCc
Q 012512 318 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDNT-IED 395 (462)
Q Consensus 318 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~ 395 (462)
++|+.|++++|.....+| ..+. ++++|+.|++++|. ++ .+|..+ .+++|+.|++++|. +..
T Consensus 778 ~sL~~L~Ls~n~~l~~lP--------~si~---~L~~L~~L~Ls~C~~L~-----~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELP--------SSIQ---NLHKLEHLEIENCINLE-----TLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccchheeCCCCCCccccC--------hhhh---CCCCCCEEECCCCCCcC-----eeCCCC-CccccCEEECCCCCcccc
Confidence 345556666555433222 3344 55677777777773 33 244433 45666666666654 221
Q ss_pred hhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccC
Q 012512 396 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIAD 451 (462)
Q Consensus 396 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~ 451 (462)
+| . ...+|+.|+|++|.|+. ++..+..+ ++|++|++++
T Consensus 841 ------~p---~---~~~nL~~L~Ls~n~i~~-----iP~si~~l-~~L~~L~L~~ 878 (1153)
T PLN03210 841 ------FP---D---ISTNISDLNLSRTGIEE-----VPWWIEKF-SNLSFLDMNG 878 (1153)
T ss_pred ------cc---c---cccccCEeECCCCCCcc-----ChHHHhcC-CCCCEEECCC
Confidence 22 1 11456666666666554 44445442 3366666655
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=5.6e-11 Score=102.17 Aligned_cols=128 Identities=25% Similarity=0.278 Sum_probs=44.0
Q ss_pred CCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcc
Q 012512 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA 368 (462)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~ 368 (462)
..+++|+|.+|.|+.. +.+ -..+.+|+.|+|++|.|+. +..+..+..|++|++++|+|++
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L----~~~l~~L~~L~Ls~N~I~~-------------l~~l~~L~~L~~L~L~~N~I~~- 78 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENL----GATLDKLEVLDLSNNQITK-------------LEGLPGLPRLKTLDLSNNRISS- 78 (175)
T ss_dssp -------------------S------TT-TT--EEE-TTS--S---------------TT----TT--EEE--SS---S-
T ss_pred cccccccccccccccc--cch----hhhhcCCCEEECCCCCCcc-------------ccCccChhhhhhcccCCCCCCc-
Confidence 4567777877777651 222 1234678888888888764 1222355778888888888886
Q ss_pred hHHHHHHHh-hcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEE
Q 012512 369 DARDLGSAL-VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSL 447 (462)
Q Consensus 369 ~~~~l~~~l-~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L 447 (462)
+.+.+ ..+++|++|++++|.|.+ +..+ ..+..+++|+.|++.+|+++...-.. .-.+.. .++|+.|
T Consensus 79 ----i~~~l~~~lp~L~~L~L~~N~I~~------l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR-~~vi~~-lP~Lk~L 145 (175)
T PF14580_consen 79 ----ISEGLDKNLPNLQELYLSNNKISD------LNEL-EPLSSLPKLRVLSLEGNPVCEKKNYR-LFVIYK-LPSLKVL 145 (175)
T ss_dssp -----CHHHHHH-TT--EEE-TTS---S------CCCC-GGGGG-TT--EEE-TT-GGGGSTTHH-HHHHHH--TT-SEE
T ss_pred ----cccchHHhCCcCCEEECcCCcCCC------hHHh-HHHHcCCCcceeeccCCcccchhhHH-HHHHHH-cChhhee
Confidence 43333 357788888888888766 2211 34456688888888888877542221 123334 2448877
Q ss_pred Ec
Q 012512 448 SI 449 (462)
Q Consensus 448 ~L 449 (462)
|-
T Consensus 146 D~ 147 (175)
T PF14580_consen 146 DG 147 (175)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=8.3e-11 Score=105.72 Aligned_cols=184 Identities=24% Similarity=0.310 Sum_probs=138.3
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCC-CCCh
Q 012512 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDR 303 (462)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l~~ 303 (462)
..|++|||+...|+......+.+. |.+|+.|++.++.+.+ .+...+..+.+|+.|+|+.+ .++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~-------C~kLk~lSlEg~~LdD--------~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQ-------CSKLKNLSLEGLRLDD--------PIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHH-------HHhhhhccccccccCc--------HHHHHHhccccceeeccccccccch
Confidence 359999999999987766655443 8889999999999888 89999999999999999987 6887
Q ss_pred hhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCC--CCCcchHHHHHHHhhcCC
Q 012512 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN--NLCKADARDLGSALVHIP 381 (462)
Q Consensus 304 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~ 381 (462)
.+...+ +.+++.|..|+|+.|.++.. .....+.+.+ .+|+.|+|+++ ++.+. .+.....+|+
T Consensus 250 n~~~ll----~~scs~L~~LNlsWc~l~~~-------~Vtv~V~his--e~l~~LNlsG~rrnl~~s---h~~tL~~rcp 313 (419)
T KOG2120|consen 250 NALQLL----LSSCSRLDELNLSWCFLFTE-------KVTVAVAHIS--ETLTQLNLSGYRRNLQKS---HLSTLVRRCP 313 (419)
T ss_pred hHHHHH----HHhhhhHhhcCchHhhccch-------hhhHHHhhhc--hhhhhhhhhhhHhhhhhh---HHHHHHHhCC
Confidence 777766 45679999999999987631 1224445444 89999999999 45554 3555567999
Q ss_pred CCCEEeCCCCC-CCchhHHhHHHHHHhhcCCCCCccEEEccCCCC-ChhhHHHHHHHHhcCCCCCcEEEccCC
Q 012512 382 NLEILDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENCEL-SGRGVSQLLDTLSTLRRPPTSLSIADN 452 (462)
Q Consensus 382 ~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~L~~L~Ls~N 452 (462)
+|.+||||+|- +++.-+..+ -..+.|++|.++.|.. -.+. + -.+.. .++|.+||+-+.
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~--------~kf~~L~~lSlsRCY~i~p~~---~-~~l~s-~psl~yLdv~g~ 373 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEF--------FKFNYLQHLSLSRCYDIIPET---L-LELNS-KPSLVYLDVFGC 373 (419)
T ss_pred ceeeeccccccccCchHHHHH--------HhcchheeeehhhhcCCChHH---e-eeecc-CcceEEEEeccc
Confidence 99999999886 777433333 3448999999999973 3321 1 12334 356999998664
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=1.3e-10 Score=104.58 Aligned_cols=86 Identities=24% Similarity=0.367 Sum_probs=38.3
Q ss_pred CCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhH
Q 012512 351 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 430 (462)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 430 (462)
.+.+|+.|||++|.++. +...-..+.++++|.|++|.|.+ + +.++.+-+|..|++++|+|....
T Consensus 327 ~L~~L~~LDLS~N~Ls~-----~~Gwh~KLGNIKtL~La~N~iE~------L----SGL~KLYSLvnLDl~~N~Ie~ld- 390 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNLLAE-----CVGWHLKLGNIKTLKLAQNKIET------L----SGLRKLYSLVNLDLSSNQIEELD- 390 (490)
T ss_pred hcccceEeecccchhHh-----hhhhHhhhcCEeeeehhhhhHhh------h----hhhHhhhhheeccccccchhhHH-
Confidence 34555555555555543 22222334455555555555544 2 22333344555555555544310
Q ss_pred HHHHHHHhcCCCCCcEEEccCCCCC
Q 012512 431 SQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 431 ~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
-...+.+++. |+++.|.+|++.
T Consensus 391 --eV~~IG~LPC-LE~l~L~~NPl~ 412 (490)
T KOG1259|consen 391 --EVNHIGNLPC-LETLRLTGNPLA 412 (490)
T ss_pred --HhcccccccH-HHHHhhcCCCcc
Confidence 1122333222 555555555554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.3e-09 Score=93.72 Aligned_cols=106 Identities=25% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccc
Q 012512 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
.+|+.|++++|.+... +.+..++.|++|++++|.|+..+. .+. ..+++|++|++++|+|.+...
T Consensus 42 ~~L~~L~Ls~N~I~~l----------~~l~~L~~L~~L~L~~N~I~~i~~-~l~----~~lp~L~~L~L~~N~I~~l~~- 105 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL----------EGLPGLPRLKTLDLSNNRISSISE-GLD----KNLPNLQELYLSNNKISDLNE- 105 (175)
T ss_dssp TT--EEE-TTS--S------------TT----TT--EEE--SS---S-CH-HHH----HH-TT--EEE-TTS---SCCC-
T ss_pred cCCCEEECCCCCCccc----------cCccChhhhhhcccCCCCCCcccc-chH----HhCCcCCEEECcCCcCCChHH-
Confidence 4455555555555441 123345566666666666654321 111 113556666666666553111
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeC
Q 012512 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDI 388 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 388 (462)
+..++.+++|+.|+|.+|.+++..- .=...+..+|+|+.||-
T Consensus 106 ---------l~~L~~l~~L~~L~L~~NPv~~~~~-YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 106 ---------LEPLSSLPKLRVLSLEGNPVCEKKN-YRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp ---------CGGGGG-TT--EEE-TT-GGGGSTT-HHHHHHHH-TT-SEETT
T ss_pred ---------hHHHHcCCCcceeeccCCcccchhh-HHHHHHHHcChhheeCC
Confidence 1222234555555555555553211 12233445555555553
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.86 E-value=1.5e-09 Score=102.04 Aligned_cols=72 Identities=33% Similarity=0.431 Sum_probs=37.9
Q ss_pred HHHHhhcCCCCCEEeCCCCC-CCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccC
Q 012512 373 LGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIAD 451 (462)
Q Consensus 373 l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~ 451 (462)
+...-.+|+.|+.+.++++. |+|+|++++- ..-.....|..+.|++|+...+ +..+.+.. ++.|+.+++-+
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~----~~~c~~~~l~~lEL~n~p~i~d---~~Le~l~~-c~~Leri~l~~ 435 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLS----SSSCSLEGLEVLELDNCPLITD---ATLEHLSI-CRNLERIELID 435 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhh----hccccccccceeeecCCCCchH---HHHHHHhh-Ccccceeeeec
Confidence 33334455666666666655 5666655553 3334445666666666654332 13344444 45566666554
Q ss_pred C
Q 012512 452 N 452 (462)
Q Consensus 452 N 452 (462)
.
T Consensus 436 ~ 436 (483)
T KOG4341|consen 436 C 436 (483)
T ss_pred h
Confidence 4
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=7e-10 Score=99.92 Aligned_cols=130 Identities=23% Similarity=0.263 Sum_probs=101.9
Q ss_pred CCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccc
Q 012512 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
..|+++++++|.++. +.+..+-.+.++.|++|+|.|...+- ++ .+++|++||||+|.++.
T Consensus 284 q~LtelDLS~N~I~~---------iDESvKL~Pkir~L~lS~N~i~~v~n--La-----~L~~L~~LDLS~N~Ls~---- 343 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ---------IDESVKLAPKLRRLILSQNRIRTVQN--LA-----ELPQLQLLDLSGNLLAE---- 343 (490)
T ss_pred hhhhhccccccchhh---------hhhhhhhccceeEEeccccceeeehh--hh-----hcccceEeecccchhHh----
Confidence 358899999999876 66666677999999999999876433 32 26899999999999873
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCcc
Q 012512 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 416 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 416 (462)
.-+-...+.++++|+|++|.|.+ ...+..+.+|..||+++|+|.. +... ..++.++-|+
T Consensus 344 --------~~Gwh~KLGNIKtL~La~N~iE~------LSGL~KLYSLvnLDl~~N~Ie~------ldeV-~~IG~LPCLE 402 (490)
T KOG1259|consen 344 --------CVGWHLKLGNIKTLKLAQNKIET------LSGLRKLYSLVNLDLSSNQIEE------LDEV-NHIGNLPCLE 402 (490)
T ss_pred --------hhhhHhhhcCEeeeehhhhhHhh------hhhhHhhhhheeccccccchhh------HHHh-cccccccHHH
Confidence 11222245689999999998875 3457778899999999999986 4433 6678889999
Q ss_pred EEEccCCCCCh
Q 012512 417 ELYLENCELSG 427 (462)
Q Consensus 417 ~L~L~~n~l~~ 427 (462)
.+.|.+|++..
T Consensus 403 ~l~L~~NPl~~ 413 (490)
T KOG1259|consen 403 TLRLTGNPLAG 413 (490)
T ss_pred HHhhcCCCccc
Confidence 99999999765
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=1.3e-10 Score=113.09 Aligned_cols=61 Identities=39% Similarity=0.378 Sum_probs=31.4
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012512 352 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 352 l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
+.+|+.|++..|++.+ +++.+. .=.|..||+|.|+|+. +| -.+++++.|++|-|++|.+.+
T Consensus 188 l~slr~l~vrRn~l~~-----lp~El~-~LpLi~lDfScNkis~------iP---v~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLED-----LPEELC-SLPLIRLDFSCNKISY------LP---VDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHHHhhhhhhh-----CCHHHh-CCceeeeecccCceee------cc---hhhhhhhhheeeeeccCCCCC
Confidence 3455555555555553 444444 2235555555555554 44 345555555555555555554
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=8.9e-09 Score=102.34 Aligned_cols=176 Identities=26% Similarity=0.268 Sum_probs=100.8
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcccccCC-CccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCCh
Q 012512 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH-KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 303 (462)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~ 303 (462)
..++.|++.+|.+++.....- ... +|+.|++++|.+.. ++..++.++.|+.|++++|++.+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~---------~~~~nL~~L~l~~N~i~~---------l~~~~~~l~~L~~L~l~~N~l~~ 177 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIG---------LLKSNLKELDLSDNKIES---------LPSPLRNLPNLKNLDLSFNDLSD 177 (394)
T ss_pred cceeEEecCCcccccCccccc---------cchhhcccccccccchhh---------hhhhhhccccccccccCCchhhh
Confidence 566777777766653222111 022 56777777776654 33455666777777777777766
Q ss_pred hhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCC
Q 012512 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 383 (462)
Q Consensus 304 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 383 (462)
.... . ...+.|+.|++++|.+.. ++..+. ....|++|.+++|.+.. ++..+....++
T Consensus 178 l~~~-~-----~~~~~L~~L~ls~N~i~~---------l~~~~~---~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l 234 (394)
T COG4886 178 LPKL-L-----SNLSNLNNLDLSGNKISD---------LPPEIE---LLSALEELDLSNNSIIE-----LLSSLSNLKNL 234 (394)
T ss_pred hhhh-h-----hhhhhhhheeccCCcccc---------Cchhhh---hhhhhhhhhhcCCccee-----cchhhhhcccc
Confidence 3222 1 123667777777777664 222221 11447777777774332 45556666667
Q ss_pred CEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCc
Q 012512 384 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 384 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
..+.+++|++.+ .+ ..+..++.++.|++++|+++.. .. +.. ..+++.|++++|.+.+.
T Consensus 235 ~~l~l~~n~~~~------~~---~~~~~l~~l~~L~~s~n~i~~i-----~~-~~~-~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 235 SGLELSNNKLED------LP---ESIGNLSNLETLDLSNNQISSI-----SS-LGS-LTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccCCceeee------cc---chhccccccceecccccccccc-----cc-ccc-cCccCEEeccCcccccc
Confidence 777777777654 12 3344556677777777777762 22 333 24477777777766544
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=3.5e-08 Score=93.05 Aligned_cols=79 Identities=23% Similarity=0.422 Sum_probs=42.7
Q ss_pred CCCCccEEEccCC-CCCcchHHHHHHHhhcCCCCCEEeCCCCC-CCchhHHhHHHHHHhhcCCCCCccEEEccCCC-CCh
Q 012512 351 SLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSG 427 (462)
Q Consensus 351 ~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~ 427 (462)
+++.|+.|.|++| .|+|+|+..+...-.....|..+.|++.+ |++..+ ..+..+++|+.+++-+|+ ++.
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L--------e~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL--------EHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH--------HHHhhCcccceeeeechhhhhh
Confidence 4556666666666 45566655555555555566666666665 333211 233445566666666664 455
Q ss_pred hhHHHHHHHH
Q 012512 428 RGVSQLLDTL 437 (462)
Q Consensus 428 ~~~~~l~~~l 437 (462)
+++..+...+
T Consensus 442 ~~i~~~~~~l 451 (483)
T KOG4341|consen 442 EAISRFATHL 451 (483)
T ss_pred hhhHHHHhhC
Confidence 5554444443
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=1.1e-07 Score=99.40 Aligned_cols=107 Identities=28% Similarity=0.437 Sum_probs=62.2
Q ss_pred ccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHH
Q 012512 320 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIR 399 (462)
Q Consensus 320 L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~ 399 (462)
++.|+|++|.+.+..| ..+. .+.+|+.|+|++|+++. .++..+..+++|+.|+|++|.++..
T Consensus 420 v~~L~L~~n~L~g~ip--------~~i~---~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~--- 481 (623)
T PLN03150 420 IDGLGLDNQGLRGFIP--------NDIS---KLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGS--- 481 (623)
T ss_pred EEEEECCCCCccccCC--------HHHh---CCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCC---
Confidence 5566666666665444 3444 44566666666666654 3555666666666666666666543
Q ss_pred hHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCC
Q 012512 400 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 453 (462)
Q Consensus 400 ~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~ 453 (462)
+| ..+..+++|+.|+|++|+++.. ++..+.....++..+++++|.
T Consensus 482 --iP---~~l~~L~~L~~L~Ls~N~l~g~----iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 482 --IP---ESLGQLTSLRILNLNGNSLSGR----VPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred --Cc---hHHhcCCCCCEEECcCCccccc----CChHHhhccccCceEEecCCc
Confidence 44 4455566666666666666654 344443322235566666664
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=4.5e-08 Score=97.29 Aligned_cols=182 Identities=29% Similarity=0.310 Sum_probs=122.1
Q ss_pred hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcC-CCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCC
Q 012512 190 TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNS-ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS 268 (462)
Q Consensus 190 ~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~ 268 (462)
...+...+.++.|++.+|.+....... ... ++|++|++++|.+.... ..+.. +++|+.|++++|.
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~-----~~~~~nL~~L~l~~N~i~~l~-~~~~~--------l~~L~~L~l~~N~ 174 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLI-----GLLKSNLKELDLSDNKIESLP-SPLRN--------LPNLKNLDLSFND 174 (394)
T ss_pred chhhhcccceeEEecCCcccccCcccc-----ccchhhcccccccccchhhhh-hhhhc--------cccccccccCCch
Confidence 344455577888888888765543321 223 27888888888887432 11111 6788889998888
Q ss_pred CCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhC
Q 012512 269 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 348 (462)
Q Consensus 269 ~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~ 348 (462)
+.+ +.......+.|+.|++++|++.+- +..+ .....|++|.+++|.+.. ....+.
T Consensus 175 l~~---------l~~~~~~~~~L~~L~ls~N~i~~l-~~~~-----~~~~~L~~l~~~~N~~~~---------~~~~~~- 229 (394)
T COG4886 175 LSD---------LPKLLSNLSNLNNLDLSGNKISDL-PPEI-----ELLSALEELDLSNNSIIE---------LLSSLS- 229 (394)
T ss_pred hhh---------hhhhhhhhhhhhheeccCCccccC-chhh-----hhhhhhhhhhhcCCccee---------cchhhh-
Confidence 876 444444667888899999988773 3322 113568888898885321 112223
Q ss_pred CCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012512 349 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 349 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
.+.++..|.+.+|++.+ ++..+...+.++.|++++|.+++ ++ .+....+++.|++++|.++.
T Consensus 230 --~~~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~------i~----~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 230 --NLKNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISS------IS----SLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred --hcccccccccCCceeee-----ccchhccccccceeccccccccc------cc----cccccCccCEEeccCccccc
Confidence 45677777788888775 45667777888889999888887 53 25666888888888887764
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=7.1e-09 Score=103.77 Aligned_cols=189 Identities=24% Similarity=0.226 Sum_probs=119.1
Q ss_pred hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc---ccCCCccEEecCC
Q 012512 190 TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR---KRIHKIENLSIDI 266 (462)
Q Consensus 190 ~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~---~~~~~L~~L~l~~ 266 (462)
+-.++....|+.|+|+++.+.. ...+.. +. .+|++| +-+|.++ ..+.+...-.--. ..=..|...+.++
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~-lr---~qLe~L-IC~~Sl~--Al~~v~ascggd~~ns~~Wn~L~~a~fsy 173 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKGLQE-LR---HQLEKL-ICHNSLD--ALRHVFASCGGDISNSPVWNKLATASFSY 173 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhhhHH-HH---Hhhhhh-hhhccHH--HHHHHHHHhccccccchhhhhHhhhhcch
Confidence 4456677889999999987654 222211 11 234444 2233222 1111111100000 0012456667777
Q ss_pred CCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhh
Q 012512 267 SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSL 346 (462)
Q Consensus 267 ~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l 346 (462)
|.+.. +...+.-++.|+.|+|++|++.+-. .+ ..++.|++|||+.|.+... ..+
T Consensus 174 N~L~~---------mD~SLqll~ale~LnLshNk~~~v~--~L-----r~l~~LkhLDlsyN~L~~v----------p~l 227 (1096)
T KOG1859|consen 174 NRLVL---------MDESLQLLPALESLNLSHNKFTKVD--NL-----RRLPKLKHLDLSYNCLRHV----------PQL 227 (1096)
T ss_pred hhHHh---------HHHHHHHHHHhhhhccchhhhhhhH--HH-----Hhcccccccccccchhccc----------ccc
Confidence 76643 7777777899999999999998733 33 3369999999999998731 122
Q ss_pred hCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCC
Q 012512 347 GAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426 (462)
Q Consensus 347 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~ 426 (462)
... + +.|+.|++++|-++. ...+.++.+|+.||+++|-|++. ..+ .-+..+..|..|.|+||.+-
T Consensus 228 ~~~-g-c~L~~L~lrnN~l~t------L~gie~LksL~~LDlsyNll~~h--seL-----~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 228 SMV-G-CKLQLLNLRNNALTT------LRGIENLKSLYGLDLSYNLLSEH--SEL-----EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred chh-h-hhheeeeecccHHHh------hhhHHhhhhhhccchhHhhhhcc--hhh-----hHHHHHHHHHHHhhcCCccc
Confidence 222 2 569999999998884 34567888999999999998763 122 22344478899999999975
Q ss_pred h
Q 012512 427 G 427 (462)
Q Consensus 427 ~ 427 (462)
-
T Consensus 293 c 293 (1096)
T KOG1859|consen 293 C 293 (1096)
T ss_pred c
Confidence 4
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=3.4e-07 Score=82.84 Aligned_cols=195 Identities=15% Similarity=0.110 Sum_probs=93.0
Q ss_pred hcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhh-cCCCCCCEEecCCCC
Q 012512 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL-SSGRSLCSLKLRHCH 300 (462)
Q Consensus 222 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l-~~l~~L~~L~Ls~n~ 300 (462)
..+..++++||.+|.|++- ..++..+.+ ++.|+.|+++.|++.. .+ ..+ .-..+|++|-|.+..
T Consensus 68 ~~~~~v~elDL~~N~iSdW--seI~~ile~----lP~l~~LNls~N~L~s--------~I-~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDW--SEIGAILEQ----LPALTTLNLSCNSLSS--------DI-KSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred HHhhhhhhhhcccchhccH--HHHHHHHhc----CccceEeeccCCcCCC--------cc-ccCcccccceEEEEEcCCC
Confidence 3345566666666666541 222222222 5556666666665543 11 111 122466666666666
Q ss_pred CChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc-ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhc
Q 012512 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS-KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH 379 (462)
Q Consensus 301 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~ 379 (462)
+........ ...++.++.|.+|.|.+.-... +-+. ...+ +.+++|++..|.... ...+...-+.
T Consensus 133 L~w~~~~s~----l~~lP~vtelHmS~N~~rq~n~Dd~c~-------e~~s--~~v~tlh~~~c~~~~--w~~~~~l~r~ 197 (418)
T KOG2982|consen 133 LSWTQSTSS----LDDLPKVTELHMSDNSLRQLNLDDNCI-------EDWS--TEVLTLHQLPCLEQL--WLNKNKLSRI 197 (418)
T ss_pred CChhhhhhh----hhcchhhhhhhhccchhhhhccccccc-------cccc--hhhhhhhcCCcHHHH--HHHHHhHHhh
Confidence 655544433 2344666666666663221000 0111 1111 345555555553221 1122223334
Q ss_pred CCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCc
Q 012512 380 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 380 ~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
.+++..+-+..|+|.+.... ......+.+.-|+|+.|+|.+... .+++.++ +.|..|.+++|++.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~e-------k~se~~p~~~~LnL~~~~idswas---vD~Ln~f-~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSE-------KGSEPFPSLSCLNLGANNIDSWAS---VDALNGF-PQLVDLRVSENPLSDP 264 (418)
T ss_pred cccchheeeecCcccchhhc-------ccCCCCCcchhhhhcccccccHHH---HHHHcCC-chhheeeccCCccccc
Confidence 56666666667766542110 334444666667777777766432 2334443 2367777777776654
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=1.7e-08 Score=98.60 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=47.9
Q ss_pred CccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccccc
Q 012512 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (462)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 337 (462)
.|+.|-+++|+++. ++.-++..+.|..||.+.|.+.. .+..+.. +.+|+.|.++.|++.+
T Consensus 144 pLkvli~sNNkl~~---------lp~~ig~~~tl~~ld~s~nei~s-lpsql~~-----l~slr~l~vrRn~l~~----- 203 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTS---------LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY-----LTSLRDLNVRRNHLED----- 203 (722)
T ss_pred cceeEEEecCcccc---------CCcccccchhHHHhhhhhhhhhh-chHHhhh-----HHHHHHHHHhhhhhhh-----
Confidence 34555555555443 33333444455555555554433 2322221 2445555555555443
Q ss_pred CcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCc
Q 012512 338 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 338 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 395 (462)
++..+.. -.|..||++.|+|+. ||-.|.++.+|++|-|.+|++..
T Consensus 204 ----lp~El~~----LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 204 ----LPEELCS----LPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ----CCHHHhC----CceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCC
Confidence 2222221 235555555555552 55555555555555555555543
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=8.1e-07 Score=92.98 Aligned_cols=85 Identities=29% Similarity=0.403 Sum_probs=44.3
Q ss_pred CCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchH
Q 012512 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA 370 (462)
Q Consensus 291 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~ 370 (462)
++.|+|++|.+.+..+..+ ..+++|+.|+|++|.+.+..| ..+. .++.|+.|+|++|+++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i-----~~L~~L~~L~Ls~N~l~g~iP--------~~~~---~l~~L~~LdLs~N~lsg--- 480 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-----SKLRHLQSINLSGNSIRGNIP--------PSLG---SITSLEVLDLSYNSFNG--- 480 (623)
T ss_pred EEEEECCCCCccccCCHHH-----hCCCCCCEEECCCCcccCcCC--------hHHh---CCCCCCEEECCCCCCCC---
Confidence 4555555555555444433 224555555555555554433 3333 33555555555555554
Q ss_pred HHHHHHhhcCCCCCEEeCCCCCCCc
Q 012512 371 RDLGSALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 371 ~~l~~~l~~~~~L~~L~Ls~N~l~~ 395 (462)
.++..+.++++|+.|+|++|.++.
T Consensus 481 -~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 481 -SIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred -CCchHHhcCCCCCEEECcCCcccc
Confidence 345555555555555555555543
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=2.1e-07 Score=65.64 Aligned_cols=57 Identities=35% Similarity=0.500 Sum_probs=25.3
Q ss_pred ccEEEccCCCCCcchHHHHH-HHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012512 355 LRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 424 (462)
Q Consensus 355 L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 424 (462)
|++|++++|+|+. ++ .++..+++|++|++++|.|+. ++. ..+..+++|+.|++++|+
T Consensus 3 L~~L~l~~n~l~~-----i~~~~f~~l~~L~~L~l~~N~l~~------i~~--~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTE-----IPPDSFSNLPNLETLDLSNNNLTS------IPP--DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESE-----ECTTTTTTGTTESEEEETSSSESE------EET--TTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCc-----cCHHHHcCCCCCCEeEccCCccCc------cCH--HHHcCCCCCCEEeCcCCc
Confidence 4444444444443 22 234444455555555554443 221 334444455555555444
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.23 E-value=4.7e-06 Score=87.28 Aligned_cols=119 Identities=23% Similarity=0.259 Sum_probs=51.3
Q ss_pred CCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCc
Q 012512 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 367 (462)
Q Consensus 288 l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~ 367 (462)
+|+|++|.+++-.+.......+ +.+.++|..||+|+++++. + .+++ ++.+|+.|.+.+=.+..
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~l----c~sFpNL~sLDIS~TnI~n---------l-~GIS---~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQL----CASFPNLRSLDISGTNISN---------L-SGIS---RLKNLQVLSMRNLEFES 209 (699)
T ss_pred CcccceEEecCceecchhHHHH----hhccCccceeecCCCCccC---------c-HHHh---ccccHHHHhccCCCCCc
Confidence 4555555555544444333333 3344555555555555543 1 2233 33455555444443333
Q ss_pred chHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChh
Q 012512 368 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR 428 (462)
Q Consensus 368 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~ 428 (462)
.. -...+.++++|+.||+|...-.+.- +.+..++ +.-..++.|+.||.|++.++..
T Consensus 210 ~~---~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYl-ec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 210 YQ---DLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYL-ECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hh---hHHHHhcccCCCeeeccccccccch-HHHHHHH-HhcccCccccEEecCCcchhHH
Confidence 11 1122334555555555554433221 1111111 2223345555555555555554
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=2.2e-07 Score=92.82 Aligned_cols=223 Identities=22% Similarity=0.185 Sum_probs=131.1
Q ss_pred hhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCC
Q 012512 191 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI 270 (462)
Q Consensus 191 ~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~ 270 (462)
..+..++++..|++..|.+...... ...+++|++|++++|.|+....-. . +..|+.|++++|.+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i~~l~--~--------l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKLEGLS--T--------LTLLKELNLSGNLIS 153 (414)
T ss_pred cccccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccccchh--h--------ccchhhheeccCcch
Confidence 3455667888888888876554321 235788999999998887532221 1 456888999998886
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHH------H
Q 012512 271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPL------F 344 (462)
Q Consensus 271 ~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~------~ 344 (462)
... .+..++.|+.+++++|.+.......+ ..+..++.+++.+|.+...........+. .
T Consensus 154 ~~~----------~~~~l~~L~~l~l~~n~i~~ie~~~~-----~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 154 DIS----------GLESLKSLKLLDLSYNRIVDIENDEL-----SELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDN 218 (414)
T ss_pred hcc----------CCccchhhhcccCCcchhhhhhhhhh-----hhccchHHHhccCCchhcccchHHHHHHHHhhcccc
Confidence 632 23346788888999888876444101 22477888888888766321100000000 0
Q ss_pred hhhCCCCC---CC--ccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEE
Q 012512 345 SLGAGKSL---QS--LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY 419 (462)
Q Consensus 345 ~l~~~~~l---~~--L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~ 419 (462)
.+....++ .. |+.+++++|++.. ++..+..+.++..+++++|.++. . ..+.....+..+.
T Consensus 219 ~i~~~~~l~~~~~~~L~~l~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n~~~~------~----~~~~~~~~~~~~~ 283 (414)
T KOG0531|consen 219 KISKLEGLNELVMLHLRELYLSGNRISR-----SPEGLENLKNLPVLDLSSNRISN------L----EGLERLPKLSELW 283 (414)
T ss_pred cceeccCcccchhHHHHHHhcccCcccc-----ccccccccccccccchhhccccc------c----ccccccchHHHhc
Confidence 00111111 11 6677777777774 32556667778888888887765 2 3344446667777
Q ss_pred ccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012512 420 LENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 420 L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
...|++.......-...... ..+++.+.+.+|.+...-+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 284 LNDNKLALSEAISQEYITSA-APTLVTLTLELNPIRKISS 322 (414)
T ss_pred cCcchhcchhhhhccccccc-cccccccccccCccccccc
Confidence 77777654311111111333 3457888888887766443
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=4.5e-07 Score=63.94 Aligned_cols=61 Identities=34% Similarity=0.464 Sum_probs=41.9
Q ss_pred CCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCC
Q 012512 318 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 393 (462)
Q Consensus 318 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l 393 (462)
++|++|++++|.++...+ ..+.++++|++|++++|+++. .-+.++..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~-----------~~f~~l~~L~~L~l~~N~l~~----i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-----------DSFSNLPNLETLDLSNNNLTS----IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT-----------TTTTTGTTESEEEETSSSESE----EETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH-----------HHHcCCCCCCEeEccCCccCc----cCHHHHcCCCCCCEEeCcCCcC
Confidence 467788888887774322 223356788888888888875 1223678888888888888864
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=9.3e-08 Score=95.43 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=24.7
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012512 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
|+.+++++|++... .+.+.. ...+..|+++.|++..
T Consensus 234 L~~l~l~~n~i~~~-----~~~~~~-~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 234 LRELYLSGNRISRS-----PEGLEN-LKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHhcccCccccc-----cccccc-cccccccchhhccccc
Confidence 77888888887762 234444 3448888888888754
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.18 E-value=2.7e-06 Score=89.09 Aligned_cols=148 Identities=20% Similarity=0.172 Sum_probs=94.8
Q ss_pred CCcCEEEeccCCCh-HHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCc
Q 012512 197 SKLQSLVLRWIRFE-EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (462)
Q Consensus 197 ~~L~~L~L~~~~~~-~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (462)
.+|++|++++.... ..+ ....+..+|+|++|.+++-.+.......+|.. +++|..||+|++.++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W---~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~s-------FpNL~sLDIS~TnI~n---- 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGW---PKKIGTMLPSLRSLVISGRQFDNDDFSQLCAS-------FPNLRSLDISGTNISN---- 187 (699)
T ss_pred HhhhhcCccccchhhccH---HHHHhhhCcccceEEecCceecchhHHHHhhc-------cCccceeecCCCCccC----
Confidence 56777777775422 222 22335567888888888876665555555553 6778888888888766
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCCh-hhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCC
Q 012512 276 SVVVELVSFLSSGRSLCSLKLRHCHLDR-DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (462)
Q Consensus 276 ~~~~~l~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 354 (462)
+ ..++.+++|+.|.+.+=.+.. .....++. +++|+.||+|....... ...+...+.....++.
T Consensus 188 -----l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-----L~~L~vLDIS~~~~~~~-----~~ii~qYlec~~~Lpe 251 (699)
T KOG3665|consen 188 -----L-SGISRLKNLQVLSMRNLEFESYQDLIDLFN-----LKKLRVLDISRDKNNDD-----TKIIEQYLECGMVLPE 251 (699)
T ss_pred -----c-HHHhccccHHHHhccCCCCCchhhHHHHhc-----ccCCCeeeccccccccc-----hHHHHHHHHhcccCcc
Confidence 2 555677888888877766654 44555543 67888888888765431 1234445555556778
Q ss_pred ccEEEccCCCCCcchHHHHH
Q 012512 355 LRLLNLRGNNLCKADARDLG 374 (462)
Q Consensus 355 L~~L~L~~n~l~~~~~~~l~ 374 (462)
|+.||.|+..+.++-++.+.
T Consensus 252 LrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 252 LRFLDCSGTDINEEILEELL 271 (699)
T ss_pred ccEEecCCcchhHHHHHHHH
Confidence 88888887777775544443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=9.5e-07 Score=80.01 Aligned_cols=198 Identities=18% Similarity=0.137 Sum_probs=119.8
Q ss_pred cCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCC
Q 012512 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (462)
Q Consensus 195 ~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (462)
.++.+++++|.+|.+. .+..++. +..++|.|+.|+|++|.+.... .+......+|+.|-|++..+..
T Consensus 69 ~~~~v~elDL~~N~iS-dWseI~~-ile~lP~l~~LNls~N~L~s~I--------~~lp~p~~nl~~lVLNgT~L~w--- 135 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLIS-DWSEIGA-ILEQLPALTTLNLSCNSLSSDI--------KSLPLPLKNLRVLVLNGTGLSW--- 135 (418)
T ss_pred Hhhhhhhhhcccchhc-cHHHHHH-HHhcCccceEeeccCCcCCCcc--------ccCcccccceEEEEEcCCCCCh---
Confidence 5578999999998764 3444433 3456999999999999886422 1222226789999999887766
Q ss_pred chhHHHHHHhhcCCCCCCEEecCCCCC-----ChhhHHHHH-------------------HHHhhCCCCccEEEecCCCC
Q 012512 275 SSVVVELVSFLSSGRSLCSLKLRHCHL-----DRDFGRMVF-------------------SSLLEASSSLSILDLSGNSI 330 (462)
Q Consensus 275 ~~~~~~l~~~l~~l~~L~~L~Ls~n~l-----~~~~~~~l~-------------------~~l~~~~~~L~~L~Ls~n~l 330 (462)
......+..+|.++.|.+|.|.+ .+.....+. ..+..-.+++..+-+..|.+
T Consensus 136 ----~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl 211 (418)
T KOG2982|consen 136 ----TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL 211 (418)
T ss_pred ----hhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcc
Confidence 34566677788888888888832 111111110 00112234555555666655
Q ss_pred CCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCch--hHHhHHHHHHhh
Q 012512 331 GGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD--GIRSLIPYFVQA 408 (462)
Q Consensus 331 ~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~--g~~~l~~~l~~~ 408 (462)
.+... + .....++.+..|+|+.++|.+- +-..++.++++|+.|.+++|++.|. |..... -.
T Consensus 212 K~~s~----e------k~se~~p~~~~LnL~~~~idsw---asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~----ll 274 (418)
T KOG2982|consen 212 KTESS----E------KGSEPFPSLSCLNLGANNIDSW---ASVDALNGFPQLVDLRVSENPLSDPLRGGERRF----LL 274 (418)
T ss_pred cchhh----c------ccCCCCCcchhhhhcccccccH---HHHHHHcCCchhheeeccCCcccccccCCcceE----EE
Confidence 43111 0 1111335666788888888863 2345688888999999999988773 111100 23
Q ss_pred cCCCCCccEEEccCCCCChh
Q 012512 409 SERCNPLVELYLENCELSGR 428 (462)
Q Consensus 409 l~~~~~L~~L~L~~n~l~~~ 428 (462)
++++++++.|+=+ +|++.
T Consensus 275 IaRL~~v~vLNGs--kIss~ 292 (418)
T KOG2982|consen 275 IARLTKVQVLNGS--KISSR 292 (418)
T ss_pred EeeccceEEecCc--ccchh
Confidence 5566777777633 66653
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=5.2e-07 Score=72.40 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=93.9
Q ss_pred CCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcc
Q 012512 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA 368 (462)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~ 368 (462)
..+..++|+.|.+.. ..+.+.. ......|...+|++|.+.+ ++..+.. ..+++++|+|++|.|++
T Consensus 27 kE~h~ldLssc~lm~-i~davy~--l~~~~el~~i~ls~N~fk~---------fp~kft~--kf~t~t~lNl~~neisd- 91 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY-IADAVYM--LSKGYELTKISLSDNGFKK---------FPKKFTI--KFPTATTLNLANNEISD- 91 (177)
T ss_pred HHhhhcccccchhhH-HHHHHHH--HhCCceEEEEecccchhhh---------CCHHHhh--ccchhhhhhcchhhhhh-
Confidence 356788999998864 3333222 2234778889999999875 2233332 33689999999999997
Q ss_pred hHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEE
Q 012512 369 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS 448 (462)
Q Consensus 369 ~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~ 448 (462)
+|..+..++.|+.|+++.|++.. .| ..+..+.++-.|+.-+|.+-+.... .+- ....-..+
T Consensus 92 ----vPeE~Aam~aLr~lNl~~N~l~~------~p---~vi~~L~~l~~Lds~~na~~eid~d----l~~--s~~~al~~ 152 (177)
T KOG4579|consen 92 ----VPEELAAMPALRSLNLRFNPLNA------EP---RVIAPLIKLDMLDSPENARAEIDVD----LFY--SSLPALIK 152 (177)
T ss_pred ----chHHHhhhHHhhhcccccCcccc------ch---HHHHHHHhHHHhcCCCCccccCcHH----Hhc--cccHHHHH
Confidence 88889999999999999999875 33 3334457788888888887663222 121 22244455
Q ss_pred ccCCCCCCcccc
Q 012512 449 IADNNLGRFCAN 460 (462)
Q Consensus 449 Ls~N~l~~~~~~ 460 (462)
+.++.++++-+.
T Consensus 153 lgnepl~~~~~~ 164 (177)
T KOG4579|consen 153 LGNEPLGDETKK 164 (177)
T ss_pred hcCCcccccCcc
Confidence 677788776553
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=5.6e-07 Score=72.23 Aligned_cols=110 Identities=23% Similarity=0.314 Sum_probs=79.1
Q ss_pred CccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccccc
Q 012512 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (462)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 337 (462)
.+..++|++|++... ......+.....|+..+|++|.+.+ .+..+.. ..+.++.|+|++|.|++
T Consensus 28 E~h~ldLssc~lm~i------~davy~l~~~~el~~i~ls~N~fk~-fp~kft~----kf~t~t~lNl~~neisd----- 91 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYI------ADAVYMLSKGYELTKISLSDNGFKK-FPKKFTI----KFPTATTLNLANNEISD----- 91 (177)
T ss_pred HhhhcccccchhhHH------HHHHHHHhCCceEEEEecccchhhh-CCHHHhh----ccchhhhhhcchhhhhh-----
Confidence 466788888876530 1233445556678888999998876 4444432 34678999999999986
Q ss_pred CcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCc
Q 012512 338 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 338 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 395 (462)
++..+. .++.|+.|+++.|.+.. .+..+..+.+|-.|+.-+|.+..
T Consensus 92 ----vPeE~A---am~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 92 ----VPEELA---AMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred ----chHHHh---hhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCcccc
Confidence 445555 55889999999999884 66666667888889988888766
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.02 E-value=2.1e-05 Score=80.23 Aligned_cols=177 Identities=23% Similarity=0.172 Sum_probs=86.2
Q ss_pred CCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCC--CCChhH--HHHHHHHHhcccccCCCccEEecCCCC-CC
Q 012512 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC--KLSPSF--VEGICRSLCSKRKRIHKIENLSIDISS-FI 270 (462)
Q Consensus 196 ~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~--~l~~~~--~~~l~~~l~~~~~~~~~L~~L~l~~~~-~~ 270 (462)
++.+++|.+..++...... ...+...+++|++|+++++ .+.... ...+... +.+|+.|+++.+. ++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI-------CRKLKSLDLSGCGLVT 257 (482)
T ss_pred CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhh-------cCCcCccchhhhhccC
Confidence 5667777776665322211 1112344677777777762 111111 1111111 5667777777666 44
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEecCCCC-CChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCC
Q 012512 271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 349 (462)
Q Consensus 271 ~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~ 349 (462)
+ ..+......+++|++|.+.+|. +++.+...+++. ++.|++|++++|.... ...+.....
T Consensus 258 d-------~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~----~~~L~~L~l~~c~~~~------d~~l~~~~~-- 318 (482)
T KOG1947|consen 258 D-------IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER----CPSLRELDLSGCHGLT------DSGLEALLK-- 318 (482)
T ss_pred c-------hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh----cCcccEEeeecCccch------HHHHHHHHH--
Confidence 4 1222222236677777766665 677777766542 3557777777665321 111222222
Q ss_pred CCCCCccEEEccCCC----CCcchHH---------HHHHHhhcCCCCCEEeCCCCCCCchhHHhH
Q 012512 350 KSLQSLRLLNLRGNN----LCKADAR---------DLGSALVHIPNLEILDISDNTIEDDGIRSL 401 (462)
Q Consensus 350 ~~l~~L~~L~L~~n~----l~~~~~~---------~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l 401 (462)
+++.++.|.+.... +++.++. .....+..+++++++.+..+.+++.|...+
T Consensus 319 -~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 382 (482)
T KOG1947|consen 319 -NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELS 382 (482)
T ss_pred -hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHH
Confidence 23344443333322 3333221 112234566677777777666666554333
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=8.2e-06 Score=52.90 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=26.0
Q ss_pred CccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCc
Q 012512 354 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 354 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 395 (462)
+|++|++++|+|++ +++.++++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 57777777777775 66667777777777777777776
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.93 E-value=3.5e-05 Score=78.63 Aligned_cols=187 Identities=25% Similarity=0.306 Sum_probs=124.1
Q ss_pred HhcCCCccEEEccCC-CCChhHHHHHHHHHhcccccCCCccEEecCCC-CCCCCCCchhHHHHHHhhcCCCCCCEEecCC
Q 012512 221 IQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRH 298 (462)
Q Consensus 221 ~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~ 298 (462)
...+++|+.|.+..+ .+.+.....+... +..|+.|+++++ ...... ..........+++|+.|++++
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~----~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALK-------CPNLEELDLSGCCLLITLS----PLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhh-------CchhheecccCcccccccc----hhHhhhhhhhcCCcCccchhh
Confidence 444789999999987 6666554444333 788999999873 222211 112333555578999999999
Q ss_pred CC-CChhhHHHHHHHHhhCCCCccEEEecCCC-CCCcccccCcccHHHhhhCCCCCCCccEEEccCC-CCCcchHHHHHH
Q 012512 299 CH-LDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGS 375 (462)
Q Consensus 299 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~ 375 (462)
+. +++.+...++.. ++.|++|.+.+|. +++. ++..... .++.|++|++++| .+++.++..+
T Consensus 253 ~~~isd~~l~~l~~~----c~~L~~L~l~~c~~lt~~-------gl~~i~~---~~~~L~~L~l~~c~~~~d~~l~~~-- 316 (482)
T KOG1947|consen 253 CGLVTDIGLSALASR----CPNLETLSLSNCSNLTDE-------GLVSIAE---RCPSLRELDLSGCHGLTDSGLEAL-- 316 (482)
T ss_pred hhccCchhHHHHHhh----CCCcceEccCCCCccchh-------HHHHHHH---hcCcccEEeeecCccchHHHHHHH--
Confidence 98 999999988763 5789999988887 6652 2333333 5578999999999 4557665444
Q ss_pred HhhcCCCCCEEeCCCCC----CCchhHHhHHH-----HHHhhcCCCCCccEEEccCCCCChhhHHHHHH
Q 012512 376 ALVHIPNLEILDISDNT----IEDDGIRSLIP-----YFVQASERCNPLVELYLENCELSGRGVSQLLD 435 (462)
Q Consensus 376 ~l~~~~~L~~L~Ls~N~----l~~~g~~~l~~-----~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 435 (462)
...|++|+.|.+.... |++.++..+.. .......++++++.+.+..+.+++.|...+..
T Consensus 317 -~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~ 384 (482)
T KOG1947|consen 317 -LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLR 384 (482)
T ss_pred -HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhc
Confidence 4457777776654433 55554433222 11134567889999999999987776544433
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=4.7e-07 Score=91.11 Aligned_cols=177 Identities=23% Similarity=0.210 Sum_probs=108.3
Q ss_pred cCCCccEEEccCCCCCh-hHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCC------CCCCEEe
Q 012512 223 NSETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG------RSLCSLK 295 (462)
Q Consensus 223 ~~~~L~~L~L~~~~l~~-~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l------~~L~~L~ 295 (462)
.++.|+.|.|.+|.+.. .|...+-..| ++|.-.+ .. ..+...+....+.. ..|.+.+
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qL----------e~LIC~~-Sl-----~Al~~v~ascggd~~ns~~Wn~L~~a~ 170 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQL----------EKLICHN-SL-----DALRHVFASCGGDISNSPVWNKLATAS 170 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhh----------hhhhhhc-cH-----HHHHHHHHHhccccccchhhhhHhhhh
Confidence 46789999999998864 3334443333 3322111 11 01111122211111 2567777
Q ss_pred cCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH
Q 012512 296 LRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS 375 (462)
Q Consensus 296 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 375 (462)
.++|.+.-.+-. + .-++.+++|||++|++++. ..+. .|+.|++|||+.|.+.. ++.
T Consensus 171 fsyN~L~~mD~S-L-----qll~ale~LnLshNk~~~v----------~~Lr---~l~~LkhLDlsyN~L~~-----vp~ 226 (1096)
T KOG1859|consen 171 FSYNRLVLMDES-L-----QLLPALESLNLSHNKFTKV----------DNLR---RLPKLKHLDLSYNCLRH-----VPQ 226 (1096)
T ss_pred cchhhHHhHHHH-H-----HHHHHhhhhccchhhhhhh----------HHHH---hcccccccccccchhcc-----ccc
Confidence 788876532211 1 1236789999999998751 2444 56889999999998874 443
Q ss_pred H-hhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCC
Q 012512 376 A-LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 454 (462)
Q Consensus 376 ~-l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l 454 (462)
. ...| .|..|+|++|.++. + ..+.++.+|+.||++.|-|++..-....-++.. |+.|+|.||++
T Consensus 227 l~~~gc-~L~~L~lrnN~l~t------L----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~----L~~L~LeGNPl 291 (1096)
T KOG1859|consen 227 LSMVGC-KLQLLNLRNNALTT------L----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSS----LIVLWLEGNPL 291 (1096)
T ss_pred cchhhh-hheeeeecccHHHh------h----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHH----HHHHhhcCCcc
Confidence 2 2234 38999999998775 3 334556889999999998777543334444544 88899999986
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=4.7e-05 Score=49.34 Aligned_cols=38 Identities=39% Similarity=0.502 Sum_probs=25.1
Q ss_pred CCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012512 381 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 381 ~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
++|++|++++|.|++ +| ..+.++++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~------l~---~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD------LP---PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS------HG---GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc------cC---chHhCCCCCCEEEecCCCCCC
Confidence 367777777777776 54 335667777777777777765
No 61
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.68 E-value=3.3e-05 Score=83.18 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=74.1
Q ss_pred cCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCC
Q 012512 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (462)
Q Consensus 195 ~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (462)
.+++|..|-+..|.. ........++..++.|+.|||++|.-....|..+.+ +.+|++|+++++.+..
T Consensus 543 ~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--------Li~LryL~L~~t~I~~--- 609 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--------LVHLRYLDLSDTGISH--- 609 (889)
T ss_pred CCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh--------hhhhhcccccCCCccc---
Confidence 445688888777642 111112222456889999999987555555666655 6778899999888765
Q ss_pred chhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCC
Q 012512 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (462)
Q Consensus 275 ~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 329 (462)
++..++.++.|.+|++..+.-....+..+ ..+++|++|.+-...
T Consensus 610 ------LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~-----~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 610 ------LPSGLGNLKKLIYLNLEVTGRLESIPGIL-----LELQSLRVLRLPRSA 653 (889)
T ss_pred ------cchHHHHHHhhheeccccccccccccchh-----hhcccccEEEeeccc
Confidence 88888888889999988776444332222 235788888886654
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=1e-05 Score=72.85 Aligned_cols=105 Identities=25% Similarity=0.216 Sum_probs=67.4
Q ss_pred CCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCc
Q 012512 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 367 (462)
Q Consensus 288 l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~ 367 (462)
+.+.++|+.-+|.|++.. + +..++.|+.|.||-|+|+. +..+..|++|++|.|..|.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIs---i----c~kMp~lEVLsLSvNkIss-------------L~pl~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---I----CEKMPLLEVLSLSVNKISS-------------LAPLQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHHhhhhcccCCCccHHH---H----HHhcccceeEEeecccccc-------------chhHHHHHHHHHHHHHhccccc
Confidence 446777888888887632 2 3446888888888888764 2223366788888888888876
Q ss_pred chHHHHHHHhhcCCCCCEEeCCCCCCCch-hHHhHHHHHHhhcCCCCCccEEE
Q 012512 368 ADARDLGSALVHIPNLEILDISDNTIEDD-GIRSLIPYFVQASERCNPLVELY 419 (462)
Q Consensus 368 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~-g~~~l~~~l~~~l~~~~~L~~L~ 419 (462)
-. =...+.++++|+.|.|..|+-... |-..-. ..++-+++|++||
T Consensus 78 ld---EL~YLknlpsLr~LWL~ENPCc~~ag~nYR~----~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 78 LD---ELEYLKNLPSLRTLWLDENPCCGEAGQNYRR----KVLRVLPNLKKLD 123 (388)
T ss_pred HH---HHHHHhcCchhhhHhhccCCcccccchhHHH----HHHHHcccchhcc
Confidence 21 123567788888888888874433 322222 3345557777775
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00044 Score=67.27 Aligned_cols=137 Identities=15% Similarity=0.276 Sum_probs=78.0
Q ss_pred cCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCC-CC
Q 012512 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HL 301 (462)
Q Consensus 223 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l 301 (462)
.+.++++|++++|.+.... .+ -.+|++|.+++|.-.. .++..+ ..+|++|++++| .+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP--~L----------P~sLtsL~Lsnc~nLt--------sLP~~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP--VL----------PNELTEITIENCNNLT--------TLPGSI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred HhcCCCEEEeCCCCCcccC--CC----------CCCCcEEEccCCCCcc--------cCCchh--hhhhhheEccCcccc
Confidence 4688899999988766321 11 2468888888764332 122222 147888888887 44
Q ss_pred ChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCC-CCcchHHHHHHHhhcC
Q 012512 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHI 380 (462)
Q Consensus 302 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~l~~~ 380 (462)
.. + ..+|+.|+++++.... +..+. .+|+.|.+.+++ .... .++..+ -
T Consensus 108 ~s-----L-------P~sLe~L~L~~n~~~~-------------L~~LP--ssLk~L~I~~~n~~~~~---~lp~~L--P 155 (426)
T PRK15386 108 SG-----L-------PESVRSLEIKGSATDS-------------IKNVP--NGLTSLSINSYNPENQA---RIDNLI--S 155 (426)
T ss_pred cc-----c-------ccccceEEeCCCCCcc-------------cccCc--chHhheecccccccccc---cccccc--C
Confidence 31 1 2568888887665432 12222 567777775433 1110 011111 1
Q ss_pred CCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012512 381 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 424 (462)
Q Consensus 381 ~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 424 (462)
++|++|++++|.... +| ..+. .+|+.|.++.|.
T Consensus 156 sSLk~L~Is~c~~i~------LP---~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 156 PSLKTLSLTGCSNII------LP---EKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CcccEEEecCCCccc------Cc---cccc--ccCcEEEecccc
Confidence 478899998887442 33 2222 688888887763
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.39 E-value=0.00017 Score=62.13 Aligned_cols=40 Identities=33% Similarity=0.502 Sum_probs=17.9
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCc
Q 012512 353 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 395 (462)
++|+.|.|.+|+|..-| .+ .-+..|++|+.|.+-+|++++
T Consensus 88 p~l~~L~LtnNsi~~l~--dl-~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 88 PNLKTLILTNNSIQELG--DL-DPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred cccceEEecCcchhhhh--hc-chhccCCccceeeecCCchhc
Confidence 34555555555444311 01 123445555555555555444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=0.0001 Score=66.07 Aligned_cols=68 Identities=28% Similarity=0.419 Sum_probs=42.9
Q ss_pred CCCCCCccEEEccCC--CCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCC
Q 012512 349 GKSLQSLRLLNLRGN--NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426 (462)
Q Consensus 349 ~~~l~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~ 426 (462)
+..+++|+.|.++.| ++.. .+......+++|+++++++|+|.+ +..+ .-+..+.+|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~----~l~vl~e~~P~l~~l~ls~Nki~~------lstl-~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSG----GLEVLAEKAPNLKVLNLSGNKIKD------LSTL-RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccc----cceehhhhCCceeEEeecCCcccc------cccc-chhhhhcchhhhhcccCCcc
Confidence 335577888888888 4432 244444556888888888888775 2221 23344567778888888654
Q ss_pred h
Q 012512 427 G 427 (462)
Q Consensus 427 ~ 427 (462)
.
T Consensus 130 ~ 130 (260)
T KOG2739|consen 130 N 130 (260)
T ss_pred c
Confidence 4
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.00053 Score=59.18 Aligned_cols=127 Identities=21% Similarity=0.272 Sum_probs=86.7
Q ss_pred CEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHH
Q 012512 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADAR 371 (462)
Q Consensus 292 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~ 371 (462)
+.++|.+.++....- + .....+...+||++|.+.. +..+.++..|.+|.|.+|+|++
T Consensus 22 ~e~~LR~lkip~ien--l----g~~~d~~d~iDLtdNdl~~-------------l~~lp~l~rL~tLll~nNrIt~---- 78 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--L----GATLDQFDAIDLTDNDLRK-------------LDNLPHLPRLHTLLLNNNRITR---- 78 (233)
T ss_pred cccccccccccchhh--c----cccccccceecccccchhh-------------cccCCCccccceEEecCCccee----
Confidence 456666666544221 1 2234678899999998763 3444577899999999999996
Q ss_pred HHHHHhh-cCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEcc
Q 012512 372 DLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIA 450 (462)
Q Consensus 372 ~l~~~l~-~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls 450 (462)
+.+.+. -+++|..|.|.+|.|.. +..+ .-+..+++|+.|.+-+|+++...-... -.+..+ ++|++||++
T Consensus 79 -I~p~L~~~~p~l~~L~LtnNsi~~------l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~-yvl~kl-p~l~~LDF~ 148 (233)
T KOG1644|consen 79 -IDPDLDTFLPNLKTLILTNNSIQE------LGDL-DPLASCPKLEYLTLLGNPVEHKKNYRL-YVLYKL-PSLRTLDFQ 148 (233)
T ss_pred -eccchhhhccccceEEecCcchhh------hhhc-chhccCCccceeeecCCchhcccCcee-EEEEec-CcceEeehh
Confidence 555444 35679999999999765 2222 446677999999999999877322211 134453 459999976
Q ss_pred C
Q 012512 451 D 451 (462)
Q Consensus 451 ~ 451 (462)
.
T Consensus 149 k 149 (233)
T KOG1644|consen 149 K 149 (233)
T ss_pred h
Confidence 4
No 67
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.09 E-value=0.00038 Score=75.16 Aligned_cols=154 Identities=20% Similarity=0.122 Sum_probs=94.3
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCC--CChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCC
Q 012512 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK--LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~--l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (462)
...+...+.+|.+..... ...++.|++|-+..|. +.......+.. ++.|..|++++|.-..
T Consensus 523 ~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~--------m~~LrVLDLs~~~~l~--- 585 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRS--------LPLLRVLDLSGNSSLS--- 585 (889)
T ss_pred hheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhh--------CcceEEEECCCCCccC---
Confidence 345556665555433332 1245678888888775 33222222222 7888899998875444
Q ss_pred chhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCC
Q 012512 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (462)
Q Consensus 275 ~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 354 (462)
.+++.++.+-+|++|+++++.+.. .|..+ .++..|.+||+..+.-....+ ..+. .+++
T Consensus 586 -----~LP~~I~~Li~LryL~L~~t~I~~-LP~~l-----~~Lk~L~~Lnl~~~~~l~~~~--------~i~~---~L~~ 643 (889)
T KOG4658|consen 586 -----KLPSSIGELVHLRYLDLSDTGISH-LPSGL-----GNLKKLIYLNLEVTGRLESIP--------GILL---ELQS 643 (889)
T ss_pred -----cCChHHhhhhhhhcccccCCCccc-cchHH-----HHHHhhheecccccccccccc--------chhh---hccc
Confidence 588888888899999999888874 55555 335788889888876432111 2222 3578
Q ss_pred ccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCC
Q 012512 355 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 391 (462)
Q Consensus 355 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 391 (462)
|++|.+..-...... .....+..+.+|+.+.....
T Consensus 644 Lr~L~l~~s~~~~~~--~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDK--LLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccEEEeeccccccch--hhHHhhhcccchhhheeecc
Confidence 888888776522222 34444566666666665433
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.94 E-value=0.00082 Score=65.39 Aligned_cols=143 Identities=19% Similarity=0.188 Sum_probs=77.4
Q ss_pred hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCC
Q 012512 190 TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF 269 (462)
Q Consensus 190 ~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~ 269 (462)
...+..+.++..|++++|.+.... .+ -.+|++|.+++|.--...+..+ ..+|++|++++|..
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sLP-~L-------P~sLtsL~Lsnc~nLtsLP~~L----------P~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESLP-VL-------PNELTEITIENCNNLTTLPGSI----------PEGLEKLTVCHCPE 106 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCcccC-CC-------CCCCcEEEccCCCCcccCCchh----------hhhhhheEccCccc
Confidence 344555677888888887554432 11 2468888888753322222222 24578888887742
Q ss_pred CCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCC-CCCcccccCcccHHHhhhC
Q 012512 270 IENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGA 348 (462)
Q Consensus 270 ~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~ 348 (462)
.. .++ ..|++|+++.+.+.. +..+ .++|+.|.+.++. ... ..++..+.
T Consensus 107 L~--------sLP------~sLe~L~L~~n~~~~--L~~L-------PssLk~L~I~~~n~~~~-------~~lp~~LP- 155 (426)
T PRK15386 107 IS--------GLP------ESVRSLEIKGSATDS--IKNV-------PNGLTSLSINSYNPENQ-------ARIDNLIS- 155 (426)
T ss_pred cc--------ccc------cccceEEeCCCCCcc--cccC-------cchHhheeccccccccc-------cccccccC-
Confidence 22 121 367778877665443 1111 2467777775433 110 00111111
Q ss_pred CCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCC
Q 012512 349 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 392 (462)
Q Consensus 349 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 392 (462)
.+|++|++++|.... ++..+. .+|+.|+++.|.
T Consensus 156 ----sSLk~L~Is~c~~i~-----LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 156 ----PSLKTLSLTGCSNII-----LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ----CcccEEEecCCCccc-----Cccccc--ccCcEEEecccc
Confidence 678888888877552 333333 477888877663
No 69
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.84 E-value=0.0016 Score=37.54 Aligned_cols=21 Identities=43% Similarity=0.740 Sum_probs=10.3
Q ss_pred CCCEEeCCCCCCCchhHHhHH
Q 012512 382 NLEILDISDNTIEDDGIRSLI 402 (462)
Q Consensus 382 ~L~~L~Ls~N~l~~~g~~~l~ 402 (462)
+|++|||++|.|+++|+++++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHH
Confidence 444455555555554444444
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00044 Score=59.70 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=48.9
Q ss_pred CCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCC-CCCcccccCcccHHHhhhCCCCCCCccEEEccCC-CCC
Q 012512 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLC 366 (462)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n-~l~ 366 (462)
..++.+|-+++.|...|.+++ ..+..++.|.+.+|. +.++. . ..+.... ++|+.|++++| +||
T Consensus 101 ~~IeaVDAsds~I~~eGle~L-----~~l~~i~~l~l~~ck~~dD~~----L----~~l~~~~--~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHL-----RDLRSIKSLSLANCKYFDDWC----L----ERLGGLA--PSLQDLDLSGCPRIT 165 (221)
T ss_pred ceEEEEecCCchHHHHHHHHH-----hccchhhhheeccccchhhHH----H----HHhcccc--cchheeeccCCCeec
Confidence 366777777777777777776 446777777777776 33321 1 2222222 56777777766 666
Q ss_pred cchHHHHHHHhhcCCCCCEEeCCC
Q 012512 367 KADARDLGSALVHIPNLEILDISD 390 (462)
Q Consensus 367 ~~~~~~l~~~l~~~~~L~~L~Ls~ 390 (462)
+.|+.. +.++++|+.|.|.+
T Consensus 166 ~~GL~~----L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 166 DGGLAC----LLKLKNLRRLHLYD 185 (221)
T ss_pred hhHHHH----HHHhhhhHHHHhcC
Confidence 665443 34455666665544
No 71
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=96.74 E-value=0.0047 Score=59.99 Aligned_cols=173 Identities=15% Similarity=-0.039 Sum_probs=80.5
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCCh-hHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCc
Q 012512 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~-~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (462)
..+.+++++.|................ -.++.++++...+.- .....+.. .+..+++..+++.|.....-..
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~-~vl~~ld~s~tgirlD~l~~~l~~------g~~tkl~~~kls~ng~s~skg~ 286 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGT-LVLFKLDRSTTGIRLDLLTSPLAA------GRTTKLTFGKLSRNGTSPSKGE 286 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhh-hhhhcccccccccchhhccccccc------ccccccchhhhccCCCCccccc
Confidence 345666666665444433333222221 245555555544331 11111111 0134566666666655443333
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhC-CCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCC
Q 012512 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA-SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (462)
Q Consensus 276 ~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 354 (462)
.+.+...+.+..-.++ +|++..+....+-+..+.-.+-.+ .+.=-++|++.|...+. ..+..+.+=..
T Consensus 287 Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a----------~vleaci~g~R 355 (553)
T KOG4242|consen 287 EGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERA----------EVLEACIFGQR 355 (553)
T ss_pred ccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhcccccc----------chhhcccccee
Confidence 3334445555555566 777777766655555543332222 11123455555544431 12222222245
Q ss_pred ccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCC
Q 012512 355 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDIS 389 (462)
Q Consensus 355 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 389 (462)
+++|....|++..+|.... .+.+.+.++.+++.
T Consensus 356 ~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~ag 388 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAG 388 (553)
T ss_pred eeEeecccccccccccccc--ceeecccccccccc
Confidence 6777777777666554322 44444555555543
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.00086 Score=60.27 Aligned_cols=87 Identities=25% Similarity=0.299 Sum_probs=49.0
Q ss_pred cCCCCCCEEecCCC--CCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCC
Q 012512 286 SSGRSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN 363 (462)
Q Consensus 286 ~~l~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n 363 (462)
..+++|++|.+|.| ++.. ++..++. .+++|++|++++|++.. ...+...+.+.+|.+|++.+|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~-~l~vl~e----~~P~l~~l~ls~Nki~~----------lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSG-GLEVLAE----KAPNLKVLNLSGNKIKD----------LSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccc-cceehhh----hCCceeEEeecCCcccc----------ccccchhhhhcchhhhhcccC
Confidence 34567788888887 4433 4444443 24778888888888774 122333334567778888887
Q ss_pred CCCcchHHHHHHHhhcCCCCCEEeC
Q 012512 364 NLCKADARDLGSALVHIPNLEILDI 388 (462)
Q Consensus 364 ~l~~~~~~~l~~~l~~~~~L~~L~L 388 (462)
..+.-. ..=-..+.-+++|+.||-
T Consensus 127 ~~~~l~-dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 127 SVTNLD-DYREKVFLLLPSLKYLDG 150 (260)
T ss_pred Cccccc-cHHHHHHHHhhhhccccc
Confidence 544200 011233445566666653
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.00023 Score=64.36 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=80.9
Q ss_pred hhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCC
Q 012512 314 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 393 (462)
Q Consensus 314 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l 393 (462)
+..+.+.+.|++++|.+++ ..+. ..++.|+.|.|+-|+|+. + ..+.+|+.|++|.|..|.|
T Consensus 15 ~sdl~~vkKLNcwg~~L~D-----------Isic--~kMp~lEVLsLSvNkIss-----L-~pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDD-----------ISIC--EKMPLLEVLSLSVNKISS-----L-APLQRCTRLKELYLRKNCI 75 (388)
T ss_pred hhHHHHhhhhcccCCCccH-----------HHHH--HhcccceeEEeecccccc-----c-hhHHHHHHHHHHHHHhccc
Confidence 4556788999999999986 3333 266899999999999994 4 4478899999999999999
Q ss_pred CchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhh-HHHHHHHHhcCCCCCcEEE
Q 012512 394 EDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG-VSQLLDTLSTLRRPPTSLS 448 (462)
Q Consensus 394 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~l~~~L~~L~ 448 (462)
.+ +..+ .-+.++++|+.|-|..|.=...+ -..=..++..+ ++|+.||
T Consensus 76 ~s------ldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L-PnLkKLD 123 (388)
T KOG2123|consen 76 ES------LDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL-PNLKKLD 123 (388)
T ss_pred cc------HHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHHHHc-ccchhcc
Confidence 98 4433 45677899999999999854433 33334455553 4488876
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.50 E-value=0.0043 Score=35.68 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=23.5
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHh
Q 012512 413 NPLVELYLENCELSGRGVSQLLDTLS 438 (462)
Q Consensus 413 ~~L~~L~L~~n~l~~~~~~~l~~~l~ 438 (462)
++|++|+|++|.|++.|+..+++++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 68999999999999999999998875
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.0012 Score=57.15 Aligned_cols=84 Identities=27% Similarity=0.308 Sum_probs=48.4
Q ss_pred CccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCC-CCCcchHHHHHHHhhcCCCCCEEeCCCCC-CCch
Q 012512 319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDNT-IEDD 396 (462)
Q Consensus 319 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~ 396 (462)
.++.+|-++..|.. .++.++..++.++.|.+.+| .+.|.+++.+.. -.++|+.|++++|+ |++.
T Consensus 102 ~IeaVDAsds~I~~-----------eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY-----------EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred eEEEEecCCchHHH-----------HHHHHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechh
Confidence 45666666666553 44455555666666666666 455555555444 34566677777665 6666
Q ss_pred hHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012512 397 GIRSLIPYFVQASERCNPLVELYLENCE 424 (462)
Q Consensus 397 g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 424 (462)
|+..|. ++++|+.|.+.+=+
T Consensus 168 GL~~L~--------~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 168 GLACLL--------KLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHH--------HhhhhHHHHhcCch
Confidence 655552 22566666655543
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.28 E-value=0.0023 Score=35.34 Aligned_cols=21 Identities=57% Similarity=0.953 Sum_probs=10.4
Q ss_pred CCCCEEeCCCCCCCchhHHhH
Q 012512 381 PNLEILDISDNTIEDDGIRSL 401 (462)
Q Consensus 381 ~~L~~L~Ls~N~l~~~g~~~l 401 (462)
++|++|+|++|.|+++|++++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555555555555555444
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.50 E-value=0.0091 Score=32.87 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=16.3
Q ss_pred CCCccEEEccCCCCChhhHHHHH
Q 012512 412 CNPLVELYLENCELSGRGVSQLL 434 (462)
Q Consensus 412 ~~~L~~L~L~~n~l~~~~~~~l~ 434 (462)
+++|+.|++++|+|++.|+..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 36788888888888888877765
No 78
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=95.49 E-value=0.011 Score=57.55 Aligned_cols=232 Identities=16% Similarity=0.029 Sum_probs=125.3
Q ss_pred CCcCEEEeccCCCh--HHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCC
Q 012512 197 SKLQSLVLRWIRFE--EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (462)
Q Consensus 197 ~~L~~L~L~~~~~~--~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (462)
.-+++++.+...+. ..+..+ +...-..++..+++.|.....-.+......+..++.-.++ +|++..++.-.
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l---~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~ps--- 313 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPL---AAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPS--- 313 (553)
T ss_pred hhhhcccccccccchhhccccc---ccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCch---
Confidence 45677777765532 222222 2333457888888888665433333333333333335566 77777766544
Q ss_pred chhHHHHHHhhcCC---C--CCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCC
Q 012512 275 SSVVVELVSFLSSG---R--SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 349 (462)
Q Consensus 275 ~~~~~~l~~~l~~l---~--~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~ 349 (462)
+.+..++-.+ . .=-.+++..|...+..+..- +.+-..+++|..+.|.+.+.+. .. ...
T Consensus 314 ----E~lks~LLgla~ne~t~g~rldl~~cp~~~a~vlea----ci~g~R~q~l~~rdnnldgeg~--------~v-gk~ 376 (553)
T KOG4242|consen 314 ----EKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEA----CIFGQRVQVLLQRDNNLDGEGG--------AV-GKR 376 (553)
T ss_pred ----hhhhhhhcccccccccccccCChhhccccccchhhc----cccceeeeEeeccccccccccc--------cc-cce
Confidence 2333333321 1 12346666666655333322 2223458888888888775332 11 111
Q ss_pred CCCCCccEEEccCCC---CCcchHHHHHHHhhc--CCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012512 350 KSLQSLRLLNLRGNN---LCKADARDLGSALVH--IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 424 (462)
Q Consensus 350 ~~l~~L~~L~L~~n~---l~~~~~~~l~~~l~~--~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 424 (462)
..-...+++++.+-. +.+.+..+.+.+... ..-+..++++.|.+... ....+ ..+..+..+.+|++++|.
T Consensus 377 ~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~i----n~l~stqtl~kldisgn~ 451 (553)
T KOG4242|consen 377 KQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAI----NKLLSTQTLAKLDISGNG 451 (553)
T ss_pred eeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHH----HhhccCcccccccccCCC
Confidence 122556666665542 333333333333322 23467777777776643 22222 445556777777777777
Q ss_pred CChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012512 425 LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 425 l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
.++.|..-++.+++. +..++.+..+.|..++.+
T Consensus 452 mgd~gap~lpkalq~-n~rlr~ipds~n~p~~~g 484 (553)
T KOG4242|consen 452 MGDGGAPPLPKALQS-NCRLRPIPDSLNLPEDPG 484 (553)
T ss_pred cccCCCCcCccccCC-CCccCCCCCCCCCccccc
Confidence 777777777777776 455777777777665543
No 79
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=95.42 E-value=0.02 Score=53.45 Aligned_cols=115 Identities=19% Similarity=0.139 Sum_probs=63.6
Q ss_pred hhCCCCccEEEecCCC-CCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCC
Q 012512 314 LEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 392 (462)
Q Consensus 314 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 392 (462)
..+-+.++..+++++. |.. .....+..++. .-+..+...|.+-+..+...-++...+..|..|++|++.+|.
T Consensus 194 ~~nd~~l~evnlnn~~~ip~----e~lk~~~eal~---~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnF 266 (353)
T KOG3735|consen 194 KENDTGLTEVNLNNIRRIPI----ETLKQFSEALK---NNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNF 266 (353)
T ss_pred hcCCCCceeeeccccccCCH----HHHHHHHHHHh---cCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccc
Confidence 3455677777777664 221 11111223333 224455566666666666666666667777777777777777
Q ss_pred CCchhHHhHHHHHHhhcCCCCCccEEEccCCC--CChhhHHHHHHHHhc
Q 012512 393 IEDDGIRSLIPYFVQASERCNPLVELYLENCE--LSGRGVSQLLDTLST 439 (462)
Q Consensus 393 l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~ 439 (462)
|+..|+-+++. .+..+.+|..+...+-. +....-..++..+..
T Consensus 267 Itg~gi~a~~~----al~~n~tl~el~~dnqrq~lg~~vemeia~~lee 311 (353)
T KOG3735|consen 267 ITGLGIMALLR----ALQSNKSLTELKNDNQRQVLGNAVEMEIALELEE 311 (353)
T ss_pred cccHHHHHHHH----HHhccchhhHhhhhhHHhhcccHHHHHHHHHHHh
Confidence 77777766663 33444566655443321 333334445555555
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.86 E-value=0.069 Score=29.96 Aligned_cols=21 Identities=52% Similarity=0.871 Sum_probs=10.3
Q ss_pred CCCCEEeCCCCC-CCchhHHhH
Q 012512 381 PNLEILDISDNT-IEDDGIRSL 401 (462)
Q Consensus 381 ~~L~~L~Ls~N~-l~~~g~~~l 401 (462)
++|++|+++++. |+|.|+.++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 445555555543 555554443
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.76 E-value=0.05 Score=30.52 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=18.8
Q ss_pred CCCccEEEccCC-CCCcchHHHHH
Q 012512 352 LQSLRLLNLRGN-NLCKADARDLG 374 (462)
Q Consensus 352 l~~L~~L~L~~n-~l~~~~~~~l~ 374 (462)
+++|+.|+|++| +|+|.|+..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 368999999999 69998887764
No 82
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=92.97 E-value=0.19 Score=47.04 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=87.7
Q ss_pred CCCCCCEEecCCC-CCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCC
Q 012512 287 SGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL 365 (462)
Q Consensus 287 ~l~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l 365 (462)
+-+.++.++|+++ .|.......++.++..+ +..+...+.+.+..+ .....++..+. -+.+|++|++++|.|
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~n-t~vk~Fsla~tr~~d----~vA~a~a~ml~---~n~sl~slnvesnFI 267 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNN-THVKKFSLANTRSSD----PVAFAIAEMLK---ENKSLTSLNVESNFI 267 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHHHHHhcC-chhhhhhhhcccCCc----hhHHHHHHHHh---hcchhhheecccccc
Confidence 3468999999887 57887888888887665 788888888888774 33344445555 347999999999999
Q ss_pred CcchHHHHHHHhhcCCCCCEEeCCCCC--CCchhHHhHHHHHHhhcCCCCCccEEEccCC
Q 012512 366 CKADARDLGSALVHIPNLEILDISDNT--IEDDGIRSLIPYFVQASERCNPLVELYLENC 423 (462)
Q Consensus 366 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~--l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n 423 (462)
+..|+.++..++..+.+|.++.+.+-. ++...-..++ ..+..+.+|-.+.+..-
T Consensus 268 tg~gi~a~~~al~~n~tl~el~~dnqrq~lg~~vemeia----~~leen~sllk~gy~fe 323 (353)
T KOG3735|consen 268 TGLGIMALLRALQSNKSLTELKNDNQRQVLGNAVEMEIA----LELEENASLLKFGYHFE 323 (353)
T ss_pred ccHHHHHHHHHHhccchhhHhhhhhHHhhcccHHHHHHH----HHHHhcccccccccccC
Confidence 999999999999999999998664322 3322111111 34455556655554443
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.93 E-value=0.056 Score=28.98 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=11.3
Q ss_pred CcEEEccCCCCCCcccc
Q 012512 444 PTSLSIADNNLGRFCAN 460 (462)
Q Consensus 444 L~~L~Ls~N~l~~~~~~ 460 (462)
|++||+++|+|+ .+|.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 677888888777 5553
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.73 E-value=0.26 Score=24.49 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=6.8
Q ss_pred CCcEEEccCCCCC
Q 012512 443 PPTSLSIADNNLG 455 (462)
Q Consensus 443 ~L~~L~Ls~N~l~ 455 (462)
+|+.|++++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3677777777764
No 85
>PF07525 SOCS_box: SOCS box; InterPro: IPR001496 The SOCS box was first identified in SH2-domain-containing proteins of the suppressor of cytokines signalling (SOCS) family [] but was later also found in: the WSB (WD-40-repeat-containing proteins with a SOCS box) family, the SSB (SPRY domain-containing proteins with a SOCS box) family, the ASB (ankyrin-repeat-containing proteins with a SOCS box) family, and ras and ras-like GTPases []. The SOCS box found in these proteins is an about 50 amino acid carboxy-terminal domain composed of two blocks of well-conserved residues separated by between 2 and 10 non-conserved residues []. The C-terminal conserved region is an L/P-rich sequence of unknown function, whereas the N-terminal conserved region is a consensus BC box [], which binds to the Elongin BC complex [, ]. It has been proposed that this association could couple bound proteins to the ubiquitination or proteasomal compartments [].; GO: 0035556 intracellular signal transduction; PDB: 2XAI_A 2JZ3_A 2C9W_A 2FNJ_A 2IZV_A.
Probab=86.42 E-value=0.65 Score=29.13 Aligned_cols=16 Identities=50% Similarity=0.771 Sum_probs=12.0
Q ss_pred CccHHHHHHHHHHHHH
Q 012512 4 APSLISLAALAVKREL 19 (462)
Q Consensus 4 ~p~L~~l~~~~~~~~l 19 (462)
||||++||..+|-+++
T Consensus 1 p~sLq~LCR~~Ir~~l 16 (40)
T PF07525_consen 1 PPSLQHLCRLAIRRSL 16 (40)
T ss_dssp ---HHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHh
Confidence 6899999999988886
No 86
>cd03716 SOCS_ASB_like SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable number of repeats. SSB proteins contain a central SPRY domain and a C-terminal SOCS. Recently, it has been shown that all four SSB proteins interact with the MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), and that SSB-1, SSB-2, and SSB-4 interact with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain.
Probab=84.91 E-value=1.7 Score=27.62 Aligned_cols=20 Identities=35% Similarity=0.298 Sum_probs=16.5
Q ss_pred CCccHHHHHHHHHHHHHccC
Q 012512 3 KAPSLISLAALAVKRELLLG 22 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l~~~ 22 (462)
.|+||++||..+|-+.+-.+
T Consensus 2 ~P~sLq~LCR~~Ir~~lg~~ 21 (42)
T cd03716 2 TPRSLQHLCRLAIRRCLGRR 21 (42)
T ss_pred CCCCHHHHHHHHHHHHhCcc
Confidence 58999999999988887433
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.29 E-value=1.7 Score=43.76 Aligned_cols=15 Identities=47% Similarity=0.487 Sum_probs=8.1
Q ss_pred CCccEEEccCCCCCh
Q 012512 413 NPLVELYLENCELSG 427 (462)
Q Consensus 413 ~~L~~L~L~~n~l~~ 427 (462)
..|++|-+.||++..
T Consensus 270 l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCT 284 (585)
T ss_pred CCHHHeeecCCcccc
Confidence 345566666665433
No 88
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=81.76 E-value=2.5 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=15.0
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
.||||++||..+|-+++
T Consensus 2 ~~~sLq~LCR~~Ir~~~ 18 (39)
T cd03717 2 SVRSLQHLCRFVIRQCT 18 (39)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 57999999999988776
No 89
>cd03587 SOCS SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins with a SOCS box), and WSBs (WD40 repeat-containing proteins with a SOCS box), as well as, other miscellaneous proteins. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=80.25 E-value=3 Score=26.23 Aligned_cols=18 Identities=39% Similarity=0.403 Sum_probs=15.3
Q ss_pred CCccHHHHHHHHHHHHHc
Q 012512 3 KAPSLISLAALAVKRELL 20 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l~ 20 (462)
.||||++||..+|-+.+-
T Consensus 1 ~p~sLq~LCR~~Ir~~lg 18 (41)
T cd03587 1 NPRSLQHLCRLAIRRCLG 18 (41)
T ss_pred CCcCHHHHHHHHHHHHHC
Confidence 379999999999888863
No 90
>cd03718 SOCS_SSB1_4 SOCS (suppressors of cytokine signaling) box of SSB1 and SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 and SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF) and also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=78.04 E-value=4.1 Score=25.86 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=15.4
Q ss_pred CCccHHHHHHHHHHHHHc
Q 012512 3 KAPSLISLAALAVKRELL 20 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l~ 20 (462)
.|+||++||..+|-..+-
T Consensus 2 ~P~sLq~LCR~~Ir~~lg 19 (42)
T cd03718 2 EPLPLMDLCRRRVRVALG 19 (42)
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 589999999999887773
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.77 E-value=3 Score=33.52 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=40.9
Q ss_pred cCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCC
Q 012512 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL 365 (462)
Q Consensus 286 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l 365 (462)
.++.+|+.+.+.. .+.. +....+..+.+|+.+.+.++ +..... ..+.++.+++.+.+.. .+
T Consensus 9 ~~~~~l~~i~~~~-~~~~-----I~~~~F~~~~~l~~i~~~~~-~~~i~~-----------~~F~~~~~l~~i~~~~-~~ 69 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKK-----IGENAFSNCTSLKSINFPNN-LTSIGD-----------NAFSNCKSLESITFPN-NL 69 (129)
T ss_dssp TT-TT--EEEETS-T--E-----E-TTTTTT-TT-SEEEESST-TSCE-T-----------TTTTT-TT-EEEEETS-TT
T ss_pred hCCCCCCEEEECC-CeeE-----eChhhccccccccccccccc-ccccce-----------eeeecccccccccccc-cc
Confidence 3445666666653 2222 11111334456777776654 332111 2222445677777754 33
Q ss_pred CcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccC
Q 012512 366 CKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLEN 422 (462)
Q Consensus 366 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~ 422 (462)
..- -..++..+++|+.+++..+ +.. ++. ..+..+ .|+.+.+..
T Consensus 70 ~~i----~~~~F~~~~~l~~i~~~~~-~~~------i~~--~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 70 KSI----GDNAFSNCTNLKNIDIPSN-ITE------IGS--SSFSNC-NLKEINIPS 112 (129)
T ss_dssp -EE-----TTTTTT-TTECEEEETTT--BE------EHT--TTTTT--T--EEE-TT
T ss_pred ccc----ccccccccccccccccCcc-ccE------Ech--hhhcCC-CceEEEECC
Confidence 221 1124555677777777654 332 221 344554 667666654
No 92
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=76.67 E-value=6 Score=25.21 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=13.9
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
.-+||++||..+|..+.
T Consensus 2 ~~~sLQhLCR~tI~~~~ 18 (43)
T cd03735 2 RVRPLQELCRKSIVATF 18 (43)
T ss_pred CccCHHHHHHHHHHHhc
Confidence 35799999999977664
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=73.04 E-value=3.3 Score=22.83 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=8.0
Q ss_pred CCCCEEeCCCCCCCc
Q 012512 381 PNLEILDISDNTIED 395 (462)
Q Consensus 381 ~~L~~L~Ls~N~l~~ 395 (462)
++|+.|+|++|.|..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555544
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=73.04 E-value=3.3 Score=22.83 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=8.0
Q ss_pred CCCCEEeCCCCCCCc
Q 012512 381 PNLEILDISDNTIED 395 (462)
Q Consensus 381 ~~L~~L~Ls~N~l~~ 395 (462)
++|+.|+|++|.|..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555544
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.06 E-value=3.7 Score=23.01 Aligned_cols=15 Identities=53% Similarity=0.733 Sum_probs=9.8
Q ss_pred CCCCEEeCCCCCCCc
Q 012512 381 PNLEILDISDNTIED 395 (462)
Q Consensus 381 ~~L~~L~Ls~N~l~~ 395 (462)
.+|+.|+|++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456777777777654
No 96
>cd03723 SOCS_ASB4_ASB18 SOCS (suppressors of cytokine signaling) box of ASB4 and ASB18 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Asb4 was identified as imprinted gene in mice. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=70.64 E-value=7 Score=25.63 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.1
Q ss_pred CCccHHHHHHHHHHHHHc
Q 012512 3 KAPSLISLAALAVKRELL 20 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l~ 20 (462)
.|+||++||..+|-+.+-
T Consensus 2 ~P~SLqhLCR~~IR~~lg 19 (48)
T cd03723 2 TPRSLQHLCRCAIRKLLG 19 (48)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 479999999999877763
No 97
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=70.59 E-value=4.5 Score=32.48 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=38.1
Q ss_pred hhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCC
Q 012512 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN 363 (462)
Q Consensus 284 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n 363 (462)
.+..+++|+.+.+.++ +..-+-.. +..+..++.+.+.+ .+.. +.. ..+..+.+|+.+++..+
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~-----F~~~~~l~~i~~~~-~~~~---------i~~--~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNA-----FSNCKSLESITFPN-NLKS---------IGD--NAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTT-----TTT-TT-EEEEETS-TT-E---------E-T--TTTTT-TTECEEEETTT
T ss_pred hccccccccccccccc-ccccceee-----eecccccccccccc-cccc---------ccc--ccccccccccccccCcc
Confidence 3455567778887764 33322111 34445788888865 3221 001 22224578888888664
Q ss_pred CCCcchHHHHHH-HhhcCCCCCEEeCCCC
Q 012512 364 NLCKADARDLGS-ALVHIPNLEILDISDN 391 (462)
Q Consensus 364 ~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N 391 (462)
++. +.. ++.++ .|+.+.+..+
T Consensus 92 -~~~-----i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 92 -ITE-----IGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp --BE-----EHTTTTTT--T--EEE-TTB
T ss_pred -ccE-----EchhhhcCC-CceEEEECCC
Confidence 443 222 35555 8888887653
No 98
>cd03729 SOCS_ASB13 SOCS (suppressors of cytokine signaling) box of ASB13-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=69.37 E-value=8.1 Score=24.50 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.6
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
.|.||++||..+|-+.+
T Consensus 2 ~P~sLqhLCR~~Ir~~l 18 (42)
T cd03729 2 TPLSLQQLCRINLRKAL 18 (42)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 58999999999977776
No 99
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=68.64 E-value=0.092 Score=46.72 Aligned_cols=84 Identities=17% Similarity=0.092 Sum_probs=50.3
Q ss_pred CCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchh
Q 012512 318 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 397 (462)
Q Consensus 318 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g 397 (462)
.+.+.||++.|++-. +...+. -++.|..|+++.|.|. .++.-+++...++.+++..|..+.
T Consensus 42 kr~tvld~~s~r~vn---------~~~n~s---~~t~~~rl~~sknq~~-----~~~~d~~q~~e~~~~~~~~n~~~~-- 102 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN---------LGKNFS---ILTRLVRLDLSKNQIK-----FLPKDAKQQRETVNAASHKNNHSQ-- 102 (326)
T ss_pred ceeeeehhhhhHHHh---------hccchH---HHHHHHHHhccHhhHh-----hChhhHHHHHHHHHHHhhccchhh--
Confidence 556667777766542 111111 2245666677766655 466666666667777777776664
Q ss_pred HHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012512 398 IRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 398 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
.| .+....++++.+++-+|.+..
T Consensus 103 ----~p---~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 103 ----QP---KSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ----CC---ccccccCCcchhhhccCcchH
Confidence 44 555666777777777776655
No 100
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=68.10 E-value=12 Score=23.63 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=13.9
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
.+|||+.||..+|-...
T Consensus 2 ~~~sLQHLCR~~I~~~~ 18 (41)
T cd03734 2 SARSLQHLCRLVINRLV 18 (41)
T ss_pred CCccHHHHHHHHHHHhc
Confidence 46899999999977654
No 101
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=65.97 E-value=7.1 Score=24.86 Aligned_cols=17 Identities=29% Similarity=0.157 Sum_probs=14.3
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
+.+||++||...|..+.
T Consensus 2 k~~SLQ~LCR~~I~~~t 18 (43)
T cd03742 2 KVLSLQDLCCRAIVSCT 18 (43)
T ss_pred ccccHHHHHHHHHHHhC
Confidence 46899999999977764
No 102
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.94 E-value=4.7 Score=40.76 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=8.1
Q ss_pred CcEEEccCCCCCC
Q 012512 444 PTSLSIADNNLGR 456 (462)
Q Consensus 444 L~~L~Ls~N~l~~ 456 (462)
|++|-+.||++..
T Consensus 272 Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 272 LEELVLEGNPLCT 284 (585)
T ss_pred HHHeeecCCcccc
Confidence 6666666666643
No 103
>cd03721 SOCS_ASB2 SOCS (suppressors of cytokine signaling) box of ASB2-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB2 targets specific proteins to destruction by the proteasome in leukemia cells that have been induced to differentiate. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=65.72 E-value=7.8 Score=25.01 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.8
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
+|+||++||..+|-+.+
T Consensus 2 ~P~sLq~LCRl~IR~~l 18 (45)
T cd03721 2 PPRPLAHLCRLKVRTLI 18 (45)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 58999999999977776
No 104
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.41 E-value=4.3 Score=22.70 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=10.3
Q ss_pred CCcEEEccCCCCCC
Q 012512 443 PPTSLSIADNNLGR 456 (462)
Q Consensus 443 ~L~~L~Ls~N~l~~ 456 (462)
+|+.|++++|+++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 47778888887764
No 105
>cd03726 SOCS_ASB7 SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=65.25 E-value=9.5 Score=24.60 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=15.1
Q ss_pred CCccHHHHHHHHHHHHHcc
Q 012512 3 KAPSLISLAALAVKRELLL 21 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l~~ 21 (462)
.|+||++||..+|-+.+=+
T Consensus 2 ~P~sL~~LCRl~IR~~lG~ 20 (45)
T cd03726 2 QPRTLQDLCRIKIRHCIGL 20 (45)
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 4789999999997777633
No 106
>cd03743 SOCS_SSB4 SOCS (suppressors of cytokine signaling) box of SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF). SSB4, like SSB2 and SSB1, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=65.04 E-value=9.3 Score=24.23 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=15.5
Q ss_pred CCccHHHHHHHHHHHHHcc
Q 012512 3 KAPSLISLAALAVKRELLL 21 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l~~ 21 (462)
.|+||.+||..+|-..+=+
T Consensus 2 ~P~sL~~lCRl~IR~~lg~ 20 (42)
T cd03743 2 EPLPLMDLCRRSARQALGR 20 (42)
T ss_pred CCcCHHHHHHHHHHHHHhH
Confidence 5799999999997777744
No 107
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=64.22 E-value=10 Score=24.04 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=18.0
Q ss_pred CccHHHHHHHHHHHHHccCCCCcchhccCch
Q 012512 4 APSLISLAALAVKRELLLGDDVIPYVYELPA 34 (462)
Q Consensus 4 ~p~L~~l~~~~~~~~l~~~~~~~~~l~~lp~ 34 (462)
-|||+.||..+|-.+. .....++.||.
T Consensus 3 v~SLQHLCR~~In~~~----~~~~~~~~LP~ 29 (42)
T cd03737 3 VSTLQHLCRKTVNGHL----DSYEKRTQLPL 29 (42)
T ss_pred cccHHHHHHHHHHHhc----CcccchhhccH
Confidence 4899999999865543 22234567775
No 108
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=64.09 E-value=12 Score=23.87 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.7
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
.||||++||..+|-+.+
T Consensus 6 ~~~sLqhLCR~~I~~~~ 22 (43)
T smart00253 6 NVPSLQHLCRFTIRRCT 22 (43)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 57999999999977775
No 109
>cd03739 SOCS_SOCS5 SOCS (suppressors of cytokine signaling) box of SOCS5-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS5 inhibits Th2 differentiation by inhibiting IL-4 signaling. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=63.95 E-value=15 Score=25.02 Aligned_cols=16 Identities=19% Similarity=0.027 Sum_probs=13.4
Q ss_pred CccHHHHHHHHHHHHH
Q 012512 4 APSLISLAALAVKREL 19 (462)
Q Consensus 4 ~p~L~~l~~~~~~~~l 19 (462)
|-||++||..+|..+.
T Consensus 3 ~fSLQhLCR~~In~~t 18 (57)
T cd03739 3 PFSLQYICRAVICRCT 18 (57)
T ss_pred CcCHHHHHHHHHHHhc
Confidence 6799999999977664
No 110
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=62.97 E-value=7.6 Score=24.72 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHHH
Q 012512 2 VKAPSLISLAALAVKREL 19 (462)
Q Consensus 2 ~~~p~L~~l~~~~~~~~l 19 (462)
+.|.+|++||..+|=..+
T Consensus 1 ~~P~~Lq~LcR~aiR~~l 18 (43)
T cd03727 1 SAPGTLKALARYAVRRSL 18 (43)
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 468999999999977666
No 111
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=62.40 E-value=33 Score=26.93 Aligned_cols=67 Identities=25% Similarity=0.458 Sum_probs=47.8
Q ss_pred cchhccCchHHHHHHHhcCChhhhhhhhhhCCCCCCCCCCCCCccccccccccccCCchHHHHHHHhchhcC---CCCCC
Q 012512 26 IPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG---FTDQI 102 (462)
Q Consensus 26 ~~~l~~lp~~l~~~l~~~l~~~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~r~~~~~~~w~~~~~~~~~~---~~~~~ 102 (462)
|.++|++|-+++.+|.....|.=|..+..+.|.-. .+-...|++.+....+. .....
T Consensus 1 i~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~--------------------~~tdeLW~~~i~rdFp~~~~~~~~~ 60 (109)
T PF06881_consen 1 IEDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--------------------EDTDELWKKLIKRDFPEESKRQKPK 60 (109)
T ss_pred CCccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--------------------hhhHHHHHHHHHhHCcChhhccccc
Confidence 46789999999999999889998888885555433 11124899988877654 22233
Q ss_pred CCCchHHHHH
Q 012512 103 EPVDWQQRYW 112 (462)
Q Consensus 103 ~~~~~~~~~~ 112 (462)
.+.+|...|.
T Consensus 61 ~~~~Wr~~Y~ 70 (109)
T PF06881_consen 61 EPESWRELYE 70 (109)
T ss_pred ccchHHHHHH
Confidence 3668988875
No 112
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=61.09 E-value=18 Score=22.75 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=12.9
Q ss_pred CCccHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKRE 18 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~ 18 (462)
.+|||+.||..+|-+.
T Consensus 2 ~~~sLQhLCR~~I~~~ 17 (41)
T cd03736 2 STPSLQHLCRITINKC 17 (41)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4689999999996544
No 113
>cd03733 SOCS_WSB_SWIP SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2), and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh), as well as, their isoforms WSB-2 and SWiP-2. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=56.72 E-value=17 Score=22.62 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=13.5
Q ss_pred CccHHHHHHHHHHHHH
Q 012512 4 APSLISLAALAVKREL 19 (462)
Q Consensus 4 ~p~L~~l~~~~~~~~l 19 (462)
+|||+.||..+|-+.+
T Consensus 3 v~sLqhLCR~~Ir~~~ 18 (39)
T cd03733 3 VSSLQHLCRMALRRVM 18 (39)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 5899999999977665
No 114
>cd03722 SOCS_ASB3 SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha by direct targeting of tumor necrosis factor receptor II (TNF-R2) for ubiquitination and proteasome-mediated degradation. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=56.02 E-value=14 Score=24.63 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHHH
Q 012512 2 VKAPSLISLAALAVKREL 19 (462)
Q Consensus 2 ~~~p~L~~l~~~~~~~~l 19 (462)
+.+|||++||..+|-..+
T Consensus 1 ~~~~sLqhLCRl~IR~~l 18 (51)
T cd03722 1 ASVPSLTHLCRLEIRSSL 18 (51)
T ss_pred CCCccHHHHHHHHHHHHc
Confidence 457999999999976665
No 115
>cd03730 SOCS_ASB14 SOCS (suppressors of cytokine signaling) box of ASB14-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=51.73 E-value=17 Score=24.79 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.4
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
.||||+.||..+|-..+
T Consensus 2 ~P~sLQHLCRl~IR~~l 18 (57)
T cd03730 2 NPRSLKHLCRLKIRACM 18 (57)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 37999999999977775
No 116
>cd03725 SOCS_ASB6 SOCS (suppressors of cytokine signaling) box of ASB6-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB6 interacts with the adaptor protein APS and recruits elongin B/C to the insulin receptor signaling complex. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=49.05 E-value=28 Score=22.32 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHHH
Q 012512 2 VKAPSLISLAALAVKREL 19 (462)
Q Consensus 2 ~~~p~L~~l~~~~~~~~l 19 (462)
+.|+||++||...|-..+
T Consensus 1 ~~P~sLqhLCR~~Ir~~l 18 (44)
T cd03725 1 SYPPPLKHLCRVFIRLCL 18 (44)
T ss_pred CCCcCHHHHHHHHHHHhc
Confidence 358999999999976665
No 117
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=45.65 E-value=25 Score=22.17 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=13.8
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
.++||++||..+|-+..
T Consensus 2 ~v~sLqhLCR~~Ir~~~ 18 (41)
T cd03740 2 QVRSLQYLCRFVIRQYT 18 (41)
T ss_pred CcccHHHHHHHHHHHHc
Confidence 45899999999977664
No 118
>cd03741 SOCS_SOCS7 SOCS (suppressors of cytokine signaling) box of SOCS7-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS7 is important in the functioning of neuronal cells. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=45.56 E-value=43 Score=22.04 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.8
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
.+|||+.||...|-+..
T Consensus 2 ~v~SLQhLCR~~Ir~~~ 18 (49)
T cd03741 2 NVQSLQHLCRFVIRKLV 18 (49)
T ss_pred CCccHHHHHHHHHHHHc
Confidence 36899999999977664
No 119
>cd03738 SOCS_SOCS4 SOCS (suppressors of cytokine signaling) box of SOCS4-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=41.98 E-value=47 Score=22.55 Aligned_cols=16 Identities=13% Similarity=-0.031 Sum_probs=13.1
Q ss_pred CccHHHHHHHHHHHHH
Q 012512 4 APSLISLAALAVKREL 19 (462)
Q Consensus 4 ~p~L~~l~~~~~~~~l 19 (462)
|-||+.||..+|..+.
T Consensus 3 ~fSLQHLCR~~I~~~t 18 (56)
T cd03738 3 PFSLQHICRTVICNCT 18 (56)
T ss_pred CcCHHHHHHHHHHhcC
Confidence 6799999999976664
No 120
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=41.18 E-value=0.42 Score=42.70 Aligned_cols=84 Identities=20% Similarity=0.263 Sum_probs=61.7
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012512 353 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 432 (462)
...+.||++.|++-. +...++..+.|..||++.|.|.. .| ..+.....+..+++..|..+.
T Consensus 42 kr~tvld~~s~r~vn-----~~~n~s~~t~~~rl~~sknq~~~------~~---~d~~q~~e~~~~~~~~n~~~~----- 102 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-----LGKNFSILTRLVRLDLSKNQIKF------LP---KDAKQQRETVNAASHKNNHSQ----- 102 (326)
T ss_pred ceeeeehhhhhHHHh-----hccchHHHHHHHHHhccHhhHhh------Ch---hhHHHHHHHHHHHhhccchhh-----
Confidence 678899999998774 55666777788889999988653 33 344444566777788887776
Q ss_pred HHHHHhcCCCCCcEEEccCCCCCC
Q 012512 433 LLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 433 l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
++.+... -++++++++-+|++..
T Consensus 103 ~p~s~~k-~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 103 QPKSQKK-EPHPKKNEQKKTEFFR 125 (326)
T ss_pred CCccccc-cCCcchhhhccCcchH
Confidence 6667777 4669999999988753
No 121
>cd03724 SOCS_ASB5 SOCS (suppressors of cytokine signaling) box of ASB5-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB5 has been implicated in the initiation of arteriogenesis. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=38.22 E-value=36 Score=21.60 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=15.8
Q ss_pred CCCccHHHHHHHHHHHHHcc
Q 012512 2 VKAPSLISLAALAVKRELLL 21 (462)
Q Consensus 2 ~~~p~L~~l~~~~~~~~l~~ 21 (462)
|.|+||.+||.-+|=+.+=+
T Consensus 1 ~~P~sL~~lCRl~iR~~lg~ 20 (42)
T cd03724 1 ATPSSLCQLCRLCIRNYIGR 20 (42)
T ss_pred CCCcCHHHHHHHHHHHHHhH
Confidence 57899999999887666633
No 122
>cd03746 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh). The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=35.25 E-value=43 Score=20.96 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.4
Q ss_pred CccHHHHHHHHHHHHH
Q 012512 4 APSLISLAALAVKREL 19 (462)
Q Consensus 4 ~p~L~~l~~~~~~~~l 19 (462)
.|||++||...|-+.+
T Consensus 3 v~sLQhLCR~~Ir~~~ 18 (40)
T cd03746 3 VASLQHLCRMAIRRVM 18 (40)
T ss_pred CcCHHHHHHHHHHHHc
Confidence 4899999999977665
No 123
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=32.36 E-value=38 Score=21.55 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=19.0
Q ss_pred hhccCchHHHHHHHhcCChhhhhhhh
Q 012512 28 YVYELPADLFDILLTCLPPLALQKLQ 53 (462)
Q Consensus 28 ~l~~lp~~l~~~l~~~l~~~~l~~~~ 53 (462)
.+.+||.++...|+..+++.-+.++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~ 27 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLS 27 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHC
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHH
Confidence 46789999999999999977655543
No 124
>cd03720 SOCS_ASB1 SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=30.76 E-value=50 Score=20.93 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHHH
Q 012512 2 VKAPSLISLAALAVKREL 19 (462)
Q Consensus 2 ~~~p~L~~l~~~~~~~~l 19 (462)
+.|+||.+||.-+|=+.+
T Consensus 1 ~~P~sL~~LcR~~iR~~l 18 (42)
T cd03720 1 GNPRSLLSLCRIAVRRAL 18 (42)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 358999999998876666
No 125
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=29.64 E-value=53 Score=20.93 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=16.1
Q ss_pred ccCchHHHHHHHhcCChhhhhhh
Q 012512 30 YELPADLFDILLTCLPPLALQKL 52 (462)
Q Consensus 30 ~~lp~~l~~~l~~~l~~~~l~~~ 52 (462)
.+||.|++..|+..+++.-+..+
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHH
T ss_pred hHhHHHHHHHHHhcCCHHHHHHH
Confidence 57999999999999887644333
No 126
>cd03719 SOCS_SSB2 SOCS (suppressors of cytokine signaling) box of SSB2 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB2 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF). SSB2, like SSB4 and SSB1, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=29.00 E-value=53 Score=20.83 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHHHcc
Q 012512 2 VKAPSLISLAALAVKRELLL 21 (462)
Q Consensus 2 ~~~p~L~~l~~~~~~~~l~~ 21 (462)
+.|.||.+||.-+|=+.+=+
T Consensus 1 ~~P~sL~~LcRl~IR~~lg~ 20 (42)
T cd03719 1 AEPHSLLHLSRLCVRHALGD 20 (42)
T ss_pred CCCCCHHHHHHHHHHHHHhH
Confidence 46899999999887766643
No 127
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=28.41 E-value=40 Score=18.74 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=5.9
Q ss_pred ccEEEccCCCCC
Q 012512 355 LRLLNLRGNNLC 366 (462)
Q Consensus 355 L~~L~L~~n~l~ 366 (462)
|++|.|....+.
T Consensus 2 LKtL~L~~v~f~ 13 (26)
T PF07723_consen 2 LKTLHLDSVVFS 13 (26)
T ss_pred CeEEEeeEEEEC
Confidence 455555554443
No 128
>cd03731 SOCS_ASB15 SOCS (suppressors of cytokine signaling) box of ASB15-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB15 is expressed predominantly in skeletal muscle and participates in the regulation of protein turnover and muscle cell development by stimulating protein synthesis and regulating differentiation of muscle cells. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=28.04 E-value=60 Score=22.08 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.1
Q ss_pred CCccHHHHHHHHHHHHH
Q 012512 3 KAPSLISLAALAVKREL 19 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l 19 (462)
.|+||++||.-+|-+.+
T Consensus 2 ~P~sL~~LCRl~IR~~l 18 (56)
T cd03731 2 NPRPLKHLCRLKIRKLM 18 (56)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999998877666
No 129
>PRK09718 hypothetical protein; Validated
Probab=27.53 E-value=30 Score=34.77 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=8.5
Q ss_pred CCccEEEccCCCCCh
Q 012512 413 NPLVELYLENCELSG 427 (462)
Q Consensus 413 ~~L~~L~L~~n~l~~ 427 (462)
+.|+..+++.|.+.+
T Consensus 228 T~LkgVDFSdC~Le~ 242 (512)
T PRK09718 228 VRISTGNFKDCITEQ 242 (512)
T ss_pred CcCCCcccccccccc
Confidence 456666666665444
No 130
>cd03745 SOCS_WSB2_SWIP2 SOCS (suppressors of cytokine signaling) box of WSB2/SWiP2-like proteins. This family consists of WSB-2 (SOCS-box-containing WD-40 protein) and SWiP-2 (SOCS box and WD-repeats in Protein). No functional information is available for WSB2 or SWiP-2, but limited information is available for the isoforms WSB-1 and SWiP-1. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=26.92 E-value=89 Score=19.47 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=12.5
Q ss_pred ccHHHHHHHHHHHHH
Q 012512 5 PSLISLAALAVKREL 19 (462)
Q Consensus 5 p~L~~l~~~~~~~~l 19 (462)
|||+.||..+|-.+.
T Consensus 4 ~SLQHLCR~~I~~~~ 18 (39)
T cd03745 4 PSLRHLCRKALRHFL 18 (39)
T ss_pred ccHHHHHHHHHHHhc
Confidence 799999999966664
No 131
>cd03744 SOCS_SSB1 SOCS (suppressors of cytokine signaling) box of SSB1 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), both the absence and the presence of HGF and enhances the HGF-MET-induced mitogen-activated protein kinases Erk-transcription factor Elk-1-serum response elements (SRE) pathway. SSB1, like SSB2 and SSB4, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=25.57 E-value=71 Score=20.25 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=15.2
Q ss_pred CCccHHHHHHHHHHHHHcc
Q 012512 3 KAPSLISLAALAVKRELLL 21 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l~~ 21 (462)
.|+||.+||.-+|=+.+=+
T Consensus 2 ~P~sL~~LCRl~iR~~lg~ 20 (42)
T cd03744 2 EPLPLMDLCRRSVRLALGR 20 (42)
T ss_pred CCCCHHHHHHHHHHHHHhH
Confidence 5799999999887777633
No 132
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=22.30 E-value=72 Score=28.47 Aligned_cols=13 Identities=15% Similarity=0.480 Sum_probs=5.5
Q ss_pred CCCEEecCCCCCC
Q 012512 290 SLCSLKLRHCHLD 302 (462)
Q Consensus 290 ~L~~L~Ls~n~l~ 302 (462)
+++--.|.+|++.
T Consensus 197 N~eGA~L~gcNfe 209 (302)
T KOG1665|consen 197 NAEGASLKGCNFE 209 (302)
T ss_pred ccccccccCcCCC
Confidence 3444444444443
Done!