BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012513
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 249/468 (53%), Positives = 311/468 (66%), Gaps = 32/468 (6%)
Query: 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSI 72
HVA++P+PGMGHLIPL + AKRLV H V+ I G G + QR VL+SLP+SI
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIA----GEGPPSKAQRTVLDSLPSSI 63
Query: 73 STIFLPPVSLDDLPDNVPIETRIILTLVRSLSSLRDALKVLTESTRL-VALVVDCFGSAA 131
S++FLPPV L DL + IE+RI LT+ RS LR E RL ALVVD FG+ A
Sbjct: 64 SSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDA 123
Query: 132 FDVANE------------------------LDVKFNCEYRDMPEPVQLPGCVPVHGRDFI 167
FDVA E LD +CE+R++ EP+ LPGCVPV G+DF+
Sbjct: 124 FDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVAGKDFL 183
Query: 168 EPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVGP 227
+P Q RK+ AY++LL K+Y A GI+VN+F ELE KAL E + PPVYPVGP
Sbjct: 184 DPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE--PGLDKPPVYPVGP 241
Query: 228 LIQTGSTNETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFL 287
L+ G CLKWLD QP SVL+V FGSGGTL+ EQLNELALGL S QRFL
Sbjct: 242 LVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFL 301
Query: 288 WVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGG 347
WV +SP AN++YF S DPL FLP GFL+RTK G V+P W+PQ QVL H STGG
Sbjct: 302 WVIRSP-SGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGG 360
Query: 348 FLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIA 407
FL+HCGWNS LES+V G+P+IAWPLY+EQKMNAVLL++D++ + R + ++GLV RE++A
Sbjct: 361 FLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVA 420
Query: 408 NYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWK 455
KGL++GEEGK +R KM+ LK+AA L DG+STK+L+ VA +WK
Sbjct: 421 RVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWK 468
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 233/484 (48%), Gaps = 79/484 (16%)
Query: 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQ-HNFLVSIF------IPTIDDGTGSFM--QPQ 61
+ + +P PG+GHL + AK L N +++F +P D S + QPQ
Sbjct: 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ 68
Query: 62 RQVLESLPTSISTIFLPPVSLDDLPDNVPIETRIILTLVRSLSSLRDALKVLTESTRLVA 121
Q+++ LP + PP L P+ ILT + SL A S ++V
Sbjct: 69 IQLID-LPE----VEPPPQELLKSPE------FYILTFLESLIPHVKATIKTILSNKVVG 117
Query: 122 LVVDCFGSAAFDVANELDVK--------------------------FNCEYRDMPEPVQL 155
LV+D F + DV NE + F+ RD + + +
Sbjct: 118 LVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDH-QLLNI 176
Query: 156 PGCVPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGES 215
PG + + K+ Y +++ GI+VN+F +LE AL + +
Sbjct: 177 PGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDE 236
Query: 216 SFNPPPVYPVGPLIQ-TGSTNET--NKRSPACLKWLDEQPSESVLFVCFGSGG-TLSQEQ 271
PP+Y VGPL+ G N + LKWLDEQP +SV+F+CFGS G + Q
Sbjct: 237 KI--PPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQ 294
Query: 272 LNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD--RTKGVGLV 329
+ E+ALGL+ SG RFLW +A F P+GFL+ +G G++
Sbjct: 295 IREIALGLKHSGVRFLW------SNSAEKKVF------------PEGFLEWMELEGKGMI 336
Query: 330 VPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKV 389
W+PQV+VL H + GGF+SHCGWNSILES+ GVPI+ WP+Y+EQ++NA L + V
Sbjct: 337 C-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 390 SFRVKVNE---NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKS 446
++V+ + +V E+I K L+ ++ ++ KK++ +K+ + NA+ GSS S
Sbjct: 396 GLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLIS 453
Query: 447 LAQV 450
+ ++
Sbjct: 454 VGKL 457
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 233/484 (48%), Gaps = 79/484 (16%)
Query: 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQ-HNFLVSIF------IPTIDDGTGSFM--QPQ 61
+ + +P PG+GHL + AK L N +++F +P D S + QPQ
Sbjct: 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ 68
Query: 62 RQVLESLPTSISTIFLPPVSLDDLPDNVPIETRIILTLVRSLSSLRDALKVLTESTRLVA 121
Q+++ LP + PP L P+ ILT + SL A S ++V
Sbjct: 69 IQLID-LPE----VEPPPQELLKSPE------FYILTFLESLIPHVKATIKTILSNKVVG 117
Query: 122 LVVDCFGSAAFDVANELDVK--------------------------FNCEYRDMPEPVQL 155
LV+D F + DV NE + F+ RD + + +
Sbjct: 118 LVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDH-QLLNI 176
Query: 156 PGCVPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGES 215
PG + + K+ Y +++ GI+VN+F +LE AL + +
Sbjct: 177 PGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDE 236
Query: 216 SFNPPPVYPVGPLIQ-TGSTNET--NKRSPACLKWLDEQPSESVLFVCFGSGG-TLSQEQ 271
PP+Y VGPL+ G N + LKWLDEQP +SV+F+CFGS G + Q
Sbjct: 237 KI--PPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQ 294
Query: 272 LNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD--RTKGVGLV 329
+ E+ALGL+ SG RFLW +A F P+GFL+ +G G++
Sbjct: 295 IREIALGLKHSGVRFLW------SNSAEKKVF------------PEGFLEWMELEGKGMI 336
Query: 330 VPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKV 389
W+PQV+VL H + GGF+SHCGWNSILES+ GVPI+ WP+Y+EQ++NA L + V
Sbjct: 337 C-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 390 SFRVKVNE---NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKS 446
++V+ + +V E+I K L+ ++ ++ KK++ +K+ + NA+ GSS S
Sbjct: 396 GLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLIS 453
Query: 447 LAQV 450
+ ++
Sbjct: 454 VGKL 457
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 133/502 (26%), Positives = 212/502 (42%), Gaps = 94/502 (18%)
Query: 11 RAHVAMVPTPGMGHLIPLAQLAKRL------------VRQHNFLVSIFIPTIDDGTGSFM 58
+ HV M+P P GH+ PL +LAK L H L+ P DG F
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFN 67
Query: 59 QPQRQVLESLPTSISTIFLPPVSLD-DLPDNVPIETRIIL-TLVRSLSSLRDALKVLTES 116
ES+P ++ P+ D D+ +VP + + ++ L L T
Sbjct: 68 ------FESIPDGLT-----PMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNV 116
Query: 117 TRLVALVVDC-------------------FGSAAFDVANELDVKFNCEYRDMPEPVQ--- 154
+ LV DC F S+A + N + + E +P +
Sbjct: 117 PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYL 176
Query: 155 -----------LPGCVPVHGRDFIEPVQQRK--NKAYRFLLSFRKQYHLAAGIMVNSFME 201
+PG +D ++ ++ + F + + + I++N+F E
Sbjct: 177 TNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNE 236
Query: 202 LETGPFKALMEGESSFNPPPVYPVGPL---------IQTGSTNETN--KRSPACLKWLDE 250
LE+ AL S P +YP+GPL I + ++N K CL WL+
Sbjct: 237 LESDVINAL-----SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLES 291
Query: 251 QPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKD 310
+ SV++V FGS ++ EQL E A GL + FLW+ + P + FS +
Sbjct: 292 KEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR-PDLVIGGSVIFSSE---- 346
Query: 311 PLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW 370
F + GL+ SW PQ +VL H S GGFL+HCGWNS ESI GVP++ W
Sbjct: 347 --------FTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCW 397
Query: 371 PLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 430
P +++Q + + ++ ++ + N V RE++A +I G++GK +++K LK
Sbjct: 398 PFFADQPTDCRFICNEWEIGMEIDTN----VKREELAKLINEVIAGDKGKKMKQKAMELK 453
Query: 431 DAAANALSPDGSSTKSLAQVAQ 452
A P G S +L +V +
Sbjct: 454 KKAEENTRPGGCSYMNLNKVIK 475
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 158/316 (50%), Gaps = 49/316 (15%)
Query: 155 LPGCVPVHGRDFIEP-VQQRKNKAY-RFLLSFRKQYHLAAGIMVNSFMELE---TGPFKA 209
+PG V RD E V N + R L + A + +NSF EL+ T K+
Sbjct: 176 IPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKS 235
Query: 210 LMEGE---SSFN---PPPVYPVGPLIQTGSTNETNKRSPACLKWLDEQPSESVLFVCFGS 263
++ FN PPPV P + CL+WL E+ SV+++ FG+
Sbjct: 236 KLKTYLNIGPFNLITPPPVVP---------------NTTGCLQWLKERKPTSVVYISFGT 280
Query: 264 GGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDF-LPKGFLDR 322
T ++ L+ LE S F+W S++D LP+GFL++
Sbjct: 281 VTTPPPAEVVALSEALEASRVPFIW------------------SLRDKARVHLPEGFLEK 322
Query: 323 TKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVL 382
T+G G+VVP W+PQ +VL H + G F++HCGWNS+ ES+ GVP+I P + +Q++N +
Sbjct: 323 TRGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRM 381
Query: 383 LTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGS 442
+ D L++ R+ E G+ + + + ++ E+GK LR+ +RAL++ A A+ P GS
Sbjct: 382 VEDVLEIGVRI---EGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGS 438
Query: 443 STKSLAQVAQRWKNPE 458
ST++ + P+
Sbjct: 439 STENFITLVDLVSKPK 454
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 139/262 (53%), Gaps = 27/262 (10%)
Query: 191 AAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVGPLIQTGSTNETNKRSPACLKWLDE 250
A + +NSF + L+E E + + VGP T + + CL+WLD+
Sbjct: 216 ANAVAINSFATIH-----PLIENELNSKFKLLLNVGPFNLTTPQRKVSDEH-GCLEWLDQ 269
Query: 251 QPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKD 310
+ SV+++ FGS T +L LA LE G F+W + D
Sbjct: 270 HENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRG-----------------D 312
Query: 311 PLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW 370
P + LPKGFL+RTK G +V +W+PQV++L+H S G FL+H GWNS+LE IV GVP+I+
Sbjct: 313 PKEKLPKGFLERTKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISR 371
Query: 371 PLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 430
P + +Q +N +L L++ V +NG++ +E I + + E+G ++R+K+ LK
Sbjct: 372 PFFGDQGLNTILTESVLEIGVGV---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLK 428
Query: 431 DAAANALSPDGSSTKSLAQVAQ 452
++A A+ +G+S + Q
Sbjct: 429 ESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 295 EEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGW 354
EE AN ++ + + + G T G+ + W PQ +L H T F++H G
Sbjct: 37 EERANVIASALAQIPQKVLWRFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGA 96
Query: 355 NSILESIVHGVPIIAWPLYSEQKMN 379
N I E+I HG+P + PL+++Q N
Sbjct: 97 NGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 330 VPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNA 380
V W PQ+ +L S F++H G S +E++ + VP++A P +EQ MNA
Sbjct: 309 VHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 330 VPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLL 383
V W PQ+ +LR F++H G E + P+IA P +Q NA +L
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
Length = 716
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 375 EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIAN 408
+Q MN + T DL+ S+R+ +N GL GR + N
Sbjct: 283 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKN 316
>pdb|3QJF|B Chain B, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|D Chain D, Crystal Structure Of The 2b4 Tcr
Length = 244
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 158 CVPVHGRDFIEPVQQRKNKAYRFLLSFRKQ 187
C+P G + QQ KN ++FL++F+ Q
Sbjct: 23 CIPEKGHPVVFWYQQNKNNEFKFLINFQNQ 52
>pdb|3QIU|D Chain D, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|D Chain D, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
pdb|3QJH|B Chain B, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|D Chain D, The Crystal Structure Of The 5c.C7 Tcr
Length = 243
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 158 CVPVHGRDFIEPVQQRKNKAYRFLLSFRKQ 187
C+P G + QQ KN ++FL++F+ Q
Sbjct: 22 CIPEKGHPVVFWYQQNKNNEFKFLINFQNQ 51
>pdb|3QIB|D Chain D, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 270
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 158 CVPVHGRDFIEPVQQRKNKAYRFLLSFRKQ 187
C+P G + QQ KN ++FL++F+ Q
Sbjct: 49 CIPEKGHPVVFWYQQNKNNEFKFLINFQNQ 78
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 218 NPPPVYPVGPLIQTGSTNETNKRSPACLKWLDEQPSESVLFVCFGSGG 265
P PV+ + P + G + + C+ WL Q E +L +C GG
Sbjct: 213 TPAPVHAL-PGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGG 259
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group I222
Length = 398
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 14 VAMVPTPGMGHLIPLAQLAKRL-VRQHNFLVSI 45
V V +PG+GHL PL QLA H+ L+++
Sbjct: 23 VLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 55
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 13 HVAMVPTPGMGHLIPLAQLAKRL-VRQHNFLVSI 45
V V +PG+GHL PL QLA H+ L+++
Sbjct: 22 RVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,521,217
Number of Sequences: 62578
Number of extensions: 552172
Number of successful extensions: 1272
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1226
Number of HSP's gapped (non-prelim): 25
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)