Query 012513
Match_columns 462
No_of_seqs 132 out of 1474
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02992 coniferyl-alcohol glu 100.0 1.3E-64 2.9E-69 503.8 40.7 432 11-456 5-469 (481)
2 PLN03015 UDP-glucosyl transfer 100.0 3.5E-64 7.6E-69 497.9 41.2 431 11-455 3-467 (470)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.2E-64 6.9E-69 504.1 40.6 433 1-462 1-477 (477)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 9.4E-64 2E-68 497.4 41.6 414 1-456 1-450 (451)
5 PLN02173 UDP-glucosyl transfer 100.0 1.4E-63 3.1E-68 493.8 42.5 406 11-455 5-447 (449)
6 PLN02208 glycosyltransferase f 100.0 1.8E-63 3.9E-68 494.1 40.8 418 8-458 1-441 (442)
7 PLN00164 glucosyltransferase; 100.0 6.9E-63 1.5E-67 496.2 42.0 433 11-458 3-475 (480)
8 PLN02555 limonoid glucosyltran 100.0 1.7E-62 3.7E-67 490.0 42.2 421 11-459 7-472 (480)
9 PLN02670 transferase, transfer 100.0 1.1E-62 2.4E-67 489.7 40.5 422 10-460 5-469 (472)
10 PLN00414 glycosyltransferase f 100.0 9.7E-63 2.1E-67 489.4 39.6 418 10-462 3-446 (446)
11 PLN02207 UDP-glycosyltransfera 100.0 1.3E-62 2.9E-67 488.6 40.3 418 11-457 3-466 (468)
12 PLN02210 UDP-glucosyl transfer 100.0 1.9E-62 4.1E-67 490.0 40.7 405 10-455 7-454 (456)
13 PLN02764 glycosyltransferase f 100.0 2.3E-62 5E-67 483.5 40.2 418 11-461 5-450 (453)
14 PLN02534 UDP-glycosyltransfera 100.0 3E-62 6.5E-67 488.8 41.2 422 9-457 6-487 (491)
15 PLN03007 UDP-glucosyltransfera 100.0 9.9E-62 2.1E-66 490.3 41.9 422 11-457 5-481 (482)
16 PLN02562 UDP-glycosyltransfera 100.0 2.4E-61 5.2E-66 481.6 41.6 407 8-455 3-448 (448)
17 PLN02152 indole-3-acetate beta 100.0 2.3E-61 5E-66 478.8 40.1 417 11-455 3-455 (455)
18 PLN03004 UDP-glycosyltransfera 100.0 9.1E-62 2E-66 481.2 37.1 418 11-445 3-450 (451)
19 PLN02554 UDP-glycosyltransfera 100.0 6.1E-61 1.3E-65 483.9 41.4 426 11-458 2-480 (481)
20 PLN02448 UDP-glycosyltransfera 100.0 8.4E-61 1.8E-65 481.2 40.9 414 6-456 5-457 (459)
21 PLN02167 UDP-glycosyltransfera 100.0 3.2E-60 7E-65 477.9 39.8 418 10-457 2-473 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.4E-47 5.2E-52 386.2 33.0 388 13-449 22-460 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.3E-48 2.9E-53 401.5 13.3 374 13-435 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.9E-41 4.1E-46 337.8 31.2 375 17-452 1-388 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.5E-41 3.3E-46 339.9 27.2 368 12-435 1-387 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 2.9E-39 6.3E-44 332.3 25.9 383 11-435 5-438 (496)
27 COG1819 Glycosyl transferases, 100.0 1E-38 2.2E-43 315.0 26.5 378 11-454 1-398 (406)
28 PRK12446 undecaprenyldiphospho 99.9 7E-21 1.5E-25 185.7 28.4 324 12-428 2-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 3.5E-21 7.7E-26 186.6 24.6 308 12-413 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.8 1.5E-18 3.4E-23 168.0 23.1 82 327-417 230-315 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.8 5.6E-17 1.2E-21 156.6 28.6 324 12-429 1-338 (357)
32 PRK00726 murG undecaprenyldiph 99.8 6.2E-16 1.3E-20 152.4 32.4 345 11-455 1-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 1.3E-13 2.9E-18 135.4 30.1 313 13-417 1-325 (350)
34 COG4671 Predicted glycosyl tra 99.6 5.1E-13 1.1E-17 123.4 23.6 341 8-416 6-365 (400)
35 TIGR01133 murG undecaprenyldip 99.6 2.6E-12 5.7E-17 126.0 29.8 77 335-417 243-322 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.6 9.6E-13 2.1E-17 130.4 23.0 110 335-451 260-383 (385)
37 PRK13609 diacylglycerol glucos 99.5 3.3E-12 7.2E-17 126.9 24.6 133 254-417 202-339 (380)
38 PRK00025 lpxB lipid-A-disaccha 99.4 1.4E-11 3E-16 122.5 21.5 110 336-456 255-377 (380)
39 TIGR03590 PseG pseudaminic aci 99.4 6.2E-12 1.3E-16 118.9 17.4 104 255-382 171-278 (279)
40 PF04101 Glyco_tran_28_C: Glyc 99.4 1.5E-14 3.3E-19 126.3 -0.4 86 326-417 55-145 (167)
41 PRK13608 diacylglycerol glucos 99.3 7.4E-09 1.6E-13 103.1 28.3 164 254-455 202-370 (391)
42 PLN02605 monogalactosyldiacylg 99.1 4.8E-09 1E-13 104.3 19.8 81 326-416 265-347 (382)
43 PF03033 Glyco_transf_28: Glyc 99.1 1.1E-11 2.4E-16 104.6 -0.6 112 14-140 1-122 (139)
44 cd03814 GT1_like_2 This family 99.1 2E-07 4.4E-12 91.2 29.4 81 325-417 246-333 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.0 4.4E-07 9.5E-12 92.7 27.7 140 256-428 264-413 (465)
46 cd03800 GT1_Sucrose_synthase T 99.0 1.8E-06 3.8E-11 86.1 30.4 81 325-417 282-369 (398)
47 cd03823 GT1_ExpE7_like This fa 99.0 1.9E-06 4E-11 84.1 29.8 81 325-417 242-330 (359)
48 cd03818 GT1_ExpC_like This fam 98.9 6.9E-06 1.5E-10 82.1 33.8 83 325-417 280-367 (396)
49 COG3980 spsG Spore coat polysa 98.9 1E-07 2.2E-12 86.1 17.5 132 256-416 160-293 (318)
50 TIGR03492 conserved hypothetic 98.9 7.8E-07 1.7E-11 88.5 24.8 107 328-451 281-393 (396)
51 PRK10307 putative glycosyl tra 98.9 6.3E-06 1.4E-10 82.8 31.0 118 326-460 284-411 (412)
52 cd03801 GT1_YqgM_like This fam 98.8 1.1E-05 2.5E-10 78.3 31.1 81 325-417 255-342 (374)
53 cd03794 GT1_wbuB_like This fam 98.8 5.1E-06 1.1E-10 81.7 28.8 81 325-417 274-366 (394)
54 cd03808 GT1_cap1E_like This fa 98.8 1.5E-05 3.2E-10 77.4 31.0 80 326-417 246-330 (359)
55 cd03816 GT1_ALG1_like This fam 98.8 1.3E-05 2.8E-10 80.6 30.2 90 327-430 295-399 (415)
56 PRK05749 3-deoxy-D-manno-octul 98.8 2.5E-06 5.4E-11 86.2 24.8 104 337-455 314-422 (425)
57 cd03817 GT1_UGDG_like This fam 98.8 5.4E-06 1.2E-10 81.1 26.1 93 325-430 258-358 (374)
58 cd04962 GT1_like_5 This family 98.7 1.8E-05 3.8E-10 78.1 28.4 92 326-429 253-350 (371)
59 cd03798 GT1_wlbH_like This fam 98.7 6E-05 1.3E-09 73.5 31.4 83 325-417 258-345 (377)
60 cd03805 GT1_ALG2_like This fam 98.7 4.7E-05 1E-09 75.8 30.7 91 325-428 279-377 (392)
61 cd03825 GT1_wcfI_like This fam 98.7 5.1E-05 1.1E-09 74.4 29.0 79 327-417 245-331 (365)
62 cd03820 GT1_amsD_like This fam 98.6 7.4E-05 1.6E-09 72.1 29.6 80 326-417 235-320 (348)
63 cd03795 GT1_like_4 This family 98.6 4.4E-05 9.6E-10 74.7 26.7 131 256-417 192-333 (357)
64 TIGR00236 wecB UDP-N-acetylglu 98.6 3.6E-06 7.8E-11 83.2 19.0 106 326-452 255-363 (365)
65 COG1519 KdtA 3-deoxy-D-manno-o 98.5 6.7E-05 1.5E-09 72.5 24.7 345 14-456 51-417 (419)
66 cd03821 GT1_Bme6_like This fam 98.5 0.00013 2.9E-09 71.2 27.9 81 325-417 261-346 (375)
67 cd03799 GT1_amsK_like This is 98.5 0.00016 3.4E-09 70.7 27.1 81 325-417 235-328 (355)
68 cd03796 GT1_PIG-A_like This fa 98.5 0.00034 7.5E-09 69.9 29.5 78 325-416 249-333 (398)
69 TIGR02468 sucrsPsyn_pln sucros 98.4 0.00058 1.3E-08 74.3 31.7 94 326-429 548-651 (1050)
70 cd05844 GT1_like_7 Glycosyltra 98.4 0.00018 3.9E-09 70.8 26.4 80 326-417 245-337 (367)
71 TIGR02472 sucr_P_syn_N sucrose 98.4 0.00078 1.7E-08 68.3 31.1 80 326-417 317-407 (439)
72 cd03822 GT1_ecORF704_like This 98.4 0.0004 8.7E-09 67.9 27.8 79 326-417 247-335 (366)
73 cd03786 GT1_UDP-GlcNAc_2-Epime 98.4 2.3E-05 4.9E-10 77.3 17.6 131 254-417 198-338 (363)
74 cd03811 GT1_WabH_like This fam 98.3 0.00029 6.3E-09 68.0 24.4 82 326-417 246-333 (353)
75 TIGR03449 mycothiol_MshA UDP-N 98.3 0.0012 2.7E-08 66.0 29.4 91 326-428 283-381 (405)
76 cd03802 GT1_AviGT4_like This f 98.3 0.00053 1.2E-08 66.4 25.8 129 256-416 172-308 (335)
77 cd03819 GT1_WavL_like This fam 98.3 0.0014 3E-08 64.0 27.9 95 326-430 246-346 (355)
78 cd04955 GT1_like_6 This family 98.2 0.0024 5.1E-08 62.6 28.3 77 325-417 247-331 (363)
79 cd03807 GT1_WbnK_like This fam 98.2 0.0042 9E-08 60.3 29.7 77 327-417 252-333 (365)
80 cd04951 GT1_WbdM_like This fam 98.2 0.00071 1.5E-08 66.2 24.0 95 326-434 245-342 (360)
81 PF04007 DUF354: Protein of un 98.2 0.0029 6.2E-08 61.0 26.6 126 254-414 179-308 (335)
82 TIGR03568 NeuC_NnaA UDP-N-acet 98.1 0.00015 3.3E-09 71.5 16.9 129 255-415 202-338 (365)
83 TIGR03087 stp1 sugar transfera 98.1 0.0034 7.5E-08 62.7 26.9 79 325-417 279-363 (397)
84 KOG3349 Predicted glycosyltran 98.0 1.6E-05 3.6E-10 64.9 7.2 115 255-392 4-131 (170)
85 cd03812 GT1_CapH_like This fam 98.0 0.0036 7.8E-08 61.2 25.0 79 326-417 249-332 (358)
86 TIGR02149 glgA_Coryne glycogen 98.0 0.0096 2.1E-07 59.1 27.9 84 327-417 261-353 (388)
87 PLN02846 digalactosyldiacylgly 98.0 0.012 2.5E-07 59.5 27.2 74 329-417 287-364 (462)
88 COG0381 WecB UDP-N-acetylgluco 97.9 0.0022 4.8E-08 61.7 20.4 350 13-453 4-371 (383)
89 TIGR02470 sucr_synth sucrose s 97.9 0.054 1.2E-06 58.0 33.5 64 354-427 657-725 (784)
90 TIGR03088 stp2 sugar transfera 97.8 0.038 8.2E-07 54.6 30.8 79 327-417 256-339 (374)
91 PLN00142 sucrose synthase 97.8 0.035 7.6E-07 59.5 28.6 65 352-426 677-747 (815)
92 cd03809 GT1_mtfB_like This fam 97.8 0.0052 1.1E-07 59.9 21.1 89 325-428 252-345 (365)
93 PLN02275 transferase, transfer 97.7 0.06 1.3E-06 53.3 31.1 75 326-414 286-371 (371)
94 PRK00654 glgA glycogen synthas 97.7 0.054 1.2E-06 55.4 27.2 78 330-415 342-427 (466)
95 cd04946 GT1_AmsK_like This fam 97.6 0.0011 2.4E-08 66.5 13.9 84 325-417 288-378 (407)
96 PRK01021 lpxB lipid-A-disaccha 97.6 0.012 2.7E-07 60.4 21.2 104 337-451 483-603 (608)
97 PRK15427 colanic acid biosynth 97.6 0.0028 6.1E-08 63.5 16.4 81 325-417 278-372 (406)
98 PF13844 Glyco_transf_41: Glyc 97.6 0.001 2.2E-08 66.5 12.7 167 254-456 284-462 (468)
99 PF02684 LpxB: Lipid-A-disacch 97.6 0.0031 6.7E-08 61.7 15.9 105 335-446 253-367 (373)
100 cd03804 GT1_wbaZ_like This fam 97.5 0.00081 1.8E-08 65.9 11.5 127 257-417 197-327 (351)
101 cd03806 GT1_ALG11_like This fa 97.5 0.1 2.2E-06 52.6 26.4 79 326-417 305-393 (419)
102 PRK14089 ipid-A-disaccharide s 97.5 0.0015 3.1E-08 63.5 12.3 101 336-450 229-344 (347)
103 PRK09922 UDP-D-galactose:(gluc 97.5 0.0034 7.4E-08 61.8 15.1 144 256-431 181-342 (359)
104 cd03791 GT1_Glycogen_synthase_ 97.5 0.1 2.2E-06 53.5 26.5 79 326-415 351-441 (476)
105 PRK15484 lipopolysaccharide 1, 97.5 0.0094 2E-07 59.2 18.0 113 326-456 257-377 (380)
106 COG0763 LpxB Lipid A disacchar 97.4 0.011 2.4E-07 56.9 17.0 107 338-455 260-380 (381)
107 PF00534 Glycos_transf_1: Glyc 97.3 0.0023 5.1E-08 55.5 10.5 80 326-417 73-159 (172)
108 PLN02949 transferase, transfer 97.2 0.36 7.9E-06 49.2 28.5 92 325-428 334-436 (463)
109 cd04949 GT1_gtfA_like This fam 97.1 0.0062 1.4E-07 60.1 12.5 96 326-430 261-360 (372)
110 COG5017 Uncharacterized conser 97.1 0.0013 2.8E-08 53.1 5.5 55 337-394 60-122 (161)
111 PF13692 Glyco_trans_1_4: Glyc 97.0 0.0023 5E-08 53.1 7.3 79 326-416 53-135 (135)
112 cd03792 GT1_Trehalose_phosphor 97.0 0.43 9.3E-06 47.1 29.7 78 326-417 252-338 (372)
113 PRK10125 putative glycosyl tra 96.8 0.63 1.4E-05 46.6 28.0 60 338-410 302-365 (405)
114 PF02350 Epimerase_2: UDP-N-ac 96.8 0.0079 1.7E-07 58.8 10.0 131 252-416 178-318 (346)
115 PLN02939 transferase, transfer 96.8 1.2 2.5E-05 48.8 26.7 83 326-415 837-930 (977)
116 PRK15179 Vi polysaccharide bio 96.8 1.1 2.3E-05 48.1 33.3 95 325-429 573-673 (694)
117 PRK09814 beta-1,6-galactofuran 96.7 0.011 2.3E-07 57.7 9.9 111 326-453 207-332 (333)
118 TIGR02918 accessory Sec system 96.6 0.042 9.2E-07 56.5 14.3 100 325-430 375-481 (500)
119 cd03813 GT1_like_3 This family 96.6 0.13 2.9E-06 52.6 17.5 81 325-417 353-443 (475)
120 cd04950 GT1_like_1 Glycosyltra 96.4 0.088 1.9E-06 52.1 14.4 79 325-417 253-341 (373)
121 PF06722 DUF1205: Protein of u 96.3 0.0057 1.2E-07 47.4 4.1 54 242-295 28-86 (97)
122 PRK10017 colanic acid biosynth 96.3 0.13 2.9E-06 51.5 14.9 107 332-456 315-424 (426)
123 KOG4626 O-linked N-acetylgluco 96.2 0.053 1.1E-06 55.0 11.0 120 254-394 758-888 (966)
124 COG3914 Spy Predicted O-linked 96.0 0.046 1E-06 55.1 9.8 105 253-378 428-543 (620)
125 cd01635 Glycosyltransferase_GT 96.0 0.6 1.3E-05 41.7 16.8 49 326-376 161-217 (229)
126 PHA01633 putative glycosyl tra 95.6 0.64 1.4E-05 45.1 15.9 83 327-416 202-307 (335)
127 PHA01630 putative group 1 glyc 95.5 0.38 8.3E-06 46.7 14.0 112 332-455 196-329 (331)
128 TIGR02095 glgA glycogen/starch 95.0 0.59 1.3E-05 47.9 14.5 79 326-415 346-436 (473)
129 PRK14098 glycogen synthase; Pr 95.0 0.61 1.3E-05 48.0 14.3 82 325-414 361-449 (489)
130 PLN02501 digalactosyldiacylgly 94.9 4.7 0.0001 42.8 20.0 75 328-417 603-682 (794)
131 PRK15490 Vi polysaccharide bio 94.5 0.76 1.6E-05 47.4 13.4 65 325-396 454-523 (578)
132 PF13524 Glyco_trans_1_2: Glyc 94.2 0.51 1.1E-05 36.0 9.1 82 351-451 9-91 (92)
133 TIGR02400 trehalose_OtsA alpha 93.0 0.89 1.9E-05 46.2 10.8 104 331-455 341-455 (456)
134 PLN02316 synthase/transferase 91.0 5.1 0.00011 44.7 14.2 115 327-453 901-1030(1036)
135 TIGR03713 acc_sec_asp1 accesso 90.1 1.9 4.1E-05 44.6 9.7 92 326-434 409-507 (519)
136 PRK10916 ADP-heptose:LPS hepto 90.0 20 0.00044 34.9 17.7 39 12-50 1-40 (348)
137 PF13579 Glyco_trans_4_4: Glyc 89.6 0.6 1.3E-05 39.1 4.8 25 27-52 6-30 (160)
138 PF13477 Glyco_trans_4_2: Glyc 88.6 2.8 6.1E-05 34.5 8.2 95 13-139 1-98 (139)
139 TIGR02193 heptsyl_trn_I lipopo 88.5 2.8 6.2E-05 40.3 9.2 134 254-414 179-319 (319)
140 PRK14099 glycogen synthase; Pr 85.3 14 0.0003 38.0 12.6 39 10-49 2-46 (485)
141 cd03788 GT1_TPS Trehalose-6-Ph 84.9 3.9 8.5E-05 41.7 8.3 104 330-454 345-459 (460)
142 TIGR02919 accessory Sec system 84.7 20 0.00044 36.2 13.1 92 325-430 328-423 (438)
143 COG1618 Predicted nucleotide k 84.4 9.5 0.00021 32.5 8.8 42 10-52 4-45 (179)
144 COG4370 Uncharacterized protei 84.0 3.4 7.4E-05 38.7 6.5 97 327-434 296-395 (412)
145 PLN03063 alpha,alpha-trehalose 81.0 5.2 0.00011 43.8 7.7 103 333-457 363-478 (797)
146 PF12000 Glyco_trans_4_3: Gkyc 80.5 13 0.00029 32.1 8.6 84 37-138 1-86 (171)
147 PF02951 GSH-S_N: Prokaryotic 79.8 3.1 6.7E-05 33.6 4.2 40 12-52 1-43 (119)
148 cd00561 CobA_CobO_BtuR ATP:cor 78.3 42 0.00091 28.7 11.2 102 13-129 4-106 (159)
149 COG1703 ArgK Putative periplas 77.6 9.7 0.00021 35.9 7.2 41 11-52 51-91 (323)
150 cd03789 GT1_LPS_heptosyltransf 77.2 64 0.0014 30.2 18.5 39 13-51 1-40 (279)
151 cd07035 TPP_PYR_POX_like Pyrim 77.2 9.9 0.00022 32.1 7.0 26 347-372 62-93 (155)
152 COG0438 RfaG Glycosyltransfera 74.9 73 0.0016 29.7 15.9 80 326-417 257-343 (381)
153 PF06258 Mito_fiss_Elm1: Mitoc 74.6 38 0.00083 32.5 10.8 59 334-394 220-281 (311)
154 cd07037 TPP_PYR_MenD Pyrimidin 74.2 14 0.00031 31.6 7.1 25 347-371 63-93 (162)
155 PLN02470 acetolactate synthase 74.0 8.6 0.00019 40.6 6.9 91 260-371 2-109 (585)
156 PRK02261 methylaspartate mutas 73.0 7.4 0.00016 32.3 4.9 40 10-50 2-41 (137)
157 PF02441 Flavoprotein: Flavopr 72.7 5 0.00011 32.9 3.8 37 12-50 1-37 (129)
158 cd02067 B12-binding B12 bindin 71.7 6.1 0.00013 31.7 4.1 36 13-49 1-36 (119)
159 PF05159 Capsule_synth: Capsul 71.6 17 0.00038 33.9 7.7 43 327-372 184-226 (269)
160 cd03793 GT1_Glycogen_synthase_ 70.9 15 0.00032 38.3 7.3 81 335-416 467-552 (590)
161 cd07039 TPP_PYR_POX Pyrimidine 70.6 51 0.0011 28.2 9.7 26 346-371 65-96 (164)
162 PRK05986 cob(I)alamin adenolsy 70.5 76 0.0016 28.0 11.4 104 11-129 22-126 (191)
163 COG0859 RfaF ADP-heptose:LPS h 70.1 1.1E+02 0.0024 29.6 15.2 42 11-53 1-44 (334)
164 PF08660 Alg14: Oligosaccharid 69.8 57 0.0012 28.2 9.8 38 14-52 1-39 (170)
165 PF01975 SurE: Survival protei 68.4 11 0.00024 33.5 5.2 40 12-53 1-40 (196)
166 KOG2941 Beta-1,4-mannosyltrans 67.4 1.3E+02 0.0027 29.3 12.1 116 9-140 10-126 (444)
167 COG0299 PurN Folate-dependent 67.3 51 0.0011 29.0 8.8 122 268-432 63-187 (200)
168 PRK06849 hypothetical protein; 66.6 30 0.00065 34.3 8.6 36 10-50 3-38 (389)
169 PF00731 AIRC: AIR carboxylase 65.9 47 0.001 28.0 8.2 139 256-435 2-148 (150)
170 TIGR02195 heptsyl_trn_II lipop 65.8 1.3E+02 0.0028 28.9 19.4 38 13-50 1-39 (334)
171 TIGR02095 glgA glycogen/starch 65.3 9.3 0.0002 39.1 4.8 38 12-50 1-44 (473)
172 PRK04885 ppnK inorganic polyph 65.0 11 0.00023 35.3 4.7 53 342-416 35-93 (265)
173 PF04464 Glyphos_transf: CDP-G 64.6 13 0.00029 36.5 5.6 113 327-451 253-368 (369)
174 cd07038 TPP_PYR_PDC_IPDC_like 64.6 42 0.00091 28.7 8.0 28 345-372 60-93 (162)
175 PF13439 Glyco_transf_4: Glyco 63.7 8.9 0.00019 32.4 3.8 31 22-53 12-42 (177)
176 PRK07710 acetolactate synthase 63.1 15 0.00033 38.6 6.0 27 345-371 79-111 (571)
177 PRK02155 ppnK NAD(+)/NADH kina 62.8 11 0.00023 35.9 4.3 57 338-416 59-119 (291)
178 COG2894 MinD Septum formation 62.6 48 0.001 30.0 7.9 37 12-49 2-40 (272)
179 COG0003 ArsA Predicted ATPase 61.8 55 0.0012 31.6 8.9 42 11-53 1-43 (322)
180 PF02310 B12-binding: B12 bind 60.2 18 0.00039 28.8 4.8 37 12-49 1-37 (121)
181 TIGR00173 menD 2-succinyl-5-en 59.9 31 0.00068 34.8 7.4 27 345-371 64-96 (432)
182 PRK10964 ADP-heptose:LPS hepto 59.7 36 0.00079 32.7 7.6 134 256-415 180-321 (322)
183 PRK08322 acetolactate synthase 59.4 21 0.00045 37.4 6.2 27 345-371 64-96 (547)
184 PRK06718 precorrin-2 dehydroge 59.3 1.3E+02 0.0028 26.7 11.8 117 328-452 56-181 (202)
185 PRK14098 glycogen synthase; Pr 58.2 13 0.00029 38.2 4.4 39 10-49 4-48 (489)
186 PRK11889 flhF flagellar biosyn 58.0 73 0.0016 31.8 9.1 41 11-52 241-281 (436)
187 PLN02929 NADH kinase 57.9 8.3 0.00018 36.6 2.6 66 341-416 63-137 (301)
188 PRK14077 pnk inorganic polypho 57.3 17 0.00038 34.4 4.7 57 338-416 60-120 (287)
189 PRK06276 acetolactate synthase 57.1 29 0.00063 36.6 6.9 27 345-371 64-96 (586)
190 PRK03372 ppnK inorganic polyph 57.0 20 0.00044 34.3 5.1 57 339-417 69-129 (306)
191 COG0496 SurE Predicted acid ph 56.6 69 0.0015 29.6 8.2 29 23-53 11-39 (252)
192 cd00984 DnaB_C DnaB helicase C 56.3 53 0.0012 29.9 7.8 41 13-53 15-55 (242)
193 PF01075 Glyco_transf_9: Glyco 55.2 29 0.00064 31.7 5.9 98 254-370 105-208 (247)
194 PF10649 DUF2478: Protein of u 55.1 81 0.0018 26.9 7.9 35 15-50 2-37 (159)
195 PRK08155 acetolactate synthase 55.0 38 0.00083 35.5 7.3 26 346-371 78-109 (564)
196 PLN02316 synthase/transferase 55.0 21 0.00045 40.1 5.4 41 9-50 585-631 (1036)
197 TIGR02398 gluc_glyc_Psyn gluco 55.0 1.6E+02 0.0035 30.2 11.5 110 328-457 364-483 (487)
198 PRK01911 ppnK inorganic polyph 54.7 15 0.00034 34.8 3.9 57 338-416 60-120 (292)
199 COG0801 FolK 7,8-dihydro-6-hyd 54.2 27 0.00059 29.7 4.8 37 256-292 3-39 (160)
200 PRK01231 ppnK inorganic polyph 54.1 49 0.0011 31.5 7.2 53 342-416 62-118 (295)
201 cd01122 GP4d_helicase GP4d_hel 53.9 59 0.0013 30.2 7.8 40 13-52 32-71 (271)
202 PRK10422 lipopolysaccharide co 52.9 1.7E+02 0.0037 28.4 11.2 43 10-52 4-47 (352)
203 PF12146 Hydrolase_4: Putative 52.3 27 0.00059 25.7 4.1 37 12-49 16-52 (79)
204 PRK04539 ppnK inorganic polyph 51.9 33 0.00071 32.7 5.6 57 338-416 64-124 (296)
205 PRK02797 4-alpha-L-fucosyltran 51.8 2.3E+02 0.0049 27.2 11.3 77 328-412 209-290 (322)
206 PRK02649 ppnK inorganic polyph 51.8 17 0.00037 34.7 3.7 55 341-417 67-125 (305)
207 PRK13011 formyltetrahydrofolat 51.5 1.2E+02 0.0025 28.8 9.2 114 274-430 156-271 (286)
208 PRK13010 purU formyltetrahydro 51.3 1.1E+02 0.0025 28.9 9.1 114 274-430 160-275 (289)
209 PRK08305 spoVFB dipicolinate s 50.1 25 0.00053 31.2 4.1 38 11-50 5-43 (196)
210 PLN02935 Bifunctional NADH kin 49.2 31 0.00067 35.2 5.1 55 341-417 261-319 (508)
211 COG0541 Ffh Signal recognition 49.2 86 0.0019 31.4 8.0 43 10-53 99-141 (451)
212 TIGR02201 heptsyl_trn_III lipo 48.9 60 0.0013 31.4 7.2 98 254-370 181-285 (344)
213 PF00551 Formyl_trans_N: Formy 48.8 49 0.0011 28.8 5.9 34 12-49 1-36 (181)
214 PRK05858 hypothetical protein; 48.7 44 0.00094 34.9 6.5 25 347-371 70-100 (542)
215 KOG0100 Molecular chaperones G 48.6 38 0.00082 33.3 5.4 83 364-460 500-585 (663)
216 COG2910 Putative NADH-flavin r 48.5 34 0.00073 30.0 4.5 33 12-49 1-33 (211)
217 PRK02231 ppnK inorganic polyph 48.3 24 0.00052 33.1 4.0 59 335-415 35-97 (272)
218 PRK14099 glycogen synthase; Pr 48.2 22 0.00047 36.6 4.1 82 329-417 354-448 (485)
219 PRK06725 acetolactate synthase 48.0 40 0.00087 35.5 6.1 27 345-371 78-110 (570)
220 cd00550 ArsA_ATPase Oxyanion-t 48.0 1.4E+02 0.0031 27.6 9.2 36 14-50 3-38 (254)
221 PRK05595 replicative DNA helic 47.9 67 0.0014 32.6 7.5 41 13-53 203-243 (444)
222 PRK03378 ppnK inorganic polyph 47.4 31 0.00067 32.8 4.7 58 337-416 58-119 (292)
223 KOG0853 Glycosyltransferase [C 47.3 41 0.00089 34.3 5.7 66 350-427 376-441 (495)
224 PRK08199 thiamine pyrophosphat 45.1 67 0.0015 33.7 7.3 27 345-371 72-104 (557)
225 PRK06048 acetolactate synthase 45.0 57 0.0012 34.3 6.7 25 347-371 73-103 (561)
226 COG1817 Uncharacterized protei 45.0 2.9E+02 0.0063 26.5 20.6 97 20-140 8-105 (346)
227 PRK14501 putative bifunctional 45.0 84 0.0018 34.2 8.1 112 329-457 345-463 (726)
228 TIGR00655 PurU formyltetrahydr 44.9 1.2E+02 0.0026 28.6 8.2 114 274-430 151-266 (280)
229 PRK03708 ppnK inorganic polyph 44.9 28 0.00062 32.8 4.0 53 342-416 57-112 (277)
230 PRK07524 hypothetical protein; 44.8 65 0.0014 33.6 7.1 25 347-371 67-97 (535)
231 COG2109 BtuR ATP:corrinoid ade 44.7 2.2E+02 0.0048 25.1 10.3 104 12-129 29-133 (198)
232 PF02585 PIG-L: GlcNAc-PI de-N 44.6 90 0.0019 25.1 6.6 21 28-49 14-34 (128)
233 PF04127 DFP: DNA / pantothena 44.6 19 0.00042 31.6 2.7 22 28-50 32-53 (185)
234 TIGR00118 acolac_lg acetolacta 44.5 56 0.0012 34.3 6.6 26 346-371 66-97 (558)
235 PRK05647 purN phosphoribosylgl 44.1 1.2E+02 0.0026 27.0 7.7 86 11-124 1-86 (200)
236 PRK08978 acetolactate synthase 44.1 50 0.0011 34.5 6.1 25 347-371 66-96 (548)
237 cd02071 MM_CoA_mut_B12_BD meth 44.0 37 0.00081 27.3 4.1 36 13-49 1-36 (122)
238 PRK06456 acetolactate synthase 43.8 42 0.00091 35.3 5.5 25 347-371 71-101 (572)
239 COG4088 Predicted nucleotide k 43.8 31 0.00068 30.8 3.7 36 12-48 2-37 (261)
240 cd02070 corrinoid_protein_B12- 43.7 43 0.00094 29.8 4.8 38 11-49 82-119 (201)
241 COG0552 FtsY Signal recognitio 43.4 84 0.0018 30.3 6.8 42 11-53 139-180 (340)
242 PRK06027 purU formyltetrahydro 43.2 1.3E+02 0.0028 28.5 8.2 114 274-430 156-271 (286)
243 PRK08527 acetolactate synthase 43.0 61 0.0013 34.1 6.6 27 345-371 67-99 (563)
244 PRK08979 acetolactate synthase 42.9 63 0.0014 34.0 6.7 27 345-371 68-100 (572)
245 TIGR00725 conserved hypothetic 42.7 1.1E+02 0.0023 26.1 6.9 39 334-372 82-123 (159)
246 PRK06466 acetolactate synthase 42.7 62 0.0013 34.1 6.6 27 345-371 68-100 (574)
247 PRK07313 phosphopantothenoylcy 42.6 32 0.0007 30.1 3.7 38 12-51 2-39 (182)
248 TIGR00682 lpxK tetraacyldisacc 42.6 36 0.00078 32.7 4.4 31 17-48 36-66 (311)
249 TIGR02699 archaeo_AfpA archaeo 42.2 32 0.00069 29.9 3.5 37 14-51 2-39 (174)
250 PRK06732 phosphopantothenate-- 42.1 34 0.00074 31.2 4.0 19 29-48 30-48 (229)
251 PRK10422 lipopolysaccharide co 42.0 1.1E+02 0.0023 29.9 7.7 98 254-370 183-287 (352)
252 TIGR01470 cysG_Nterm siroheme 41.8 2.5E+02 0.0055 25.0 11.0 110 337-451 64-180 (205)
253 TIGR02370 pyl_corrinoid methyl 41.8 48 0.001 29.4 4.8 39 11-50 84-122 (197)
254 PF06506 PrpR_N: Propionate ca 41.8 32 0.00069 29.9 3.6 33 341-374 31-63 (176)
255 PRK11269 glyoxylate carboligas 41.7 58 0.0013 34.4 6.2 27 345-371 69-101 (591)
256 PRK07525 sulfoacetaldehyde ace 41.7 1.1E+02 0.0024 32.3 8.3 27 345-371 69-101 (588)
257 PRK07282 acetolactate synthase 41.4 55 0.0012 34.4 6.0 27 345-371 74-106 (566)
258 TIGR00665 DnaB replicative DNA 41.3 70 0.0015 32.3 6.5 41 13-53 197-237 (434)
259 PRK07979 acetolactate synthase 41.0 66 0.0014 33.9 6.5 27 345-371 68-100 (574)
260 PRK01185 ppnK inorganic polyph 40.5 41 0.0009 31.5 4.3 53 342-416 52-105 (271)
261 PF05225 HTH_psq: helix-turn-h 40.2 35 0.00075 22.1 2.7 27 402-430 1-27 (45)
262 TIGR01425 SRP54_euk signal rec 40.2 2.4E+02 0.0052 28.5 9.8 42 11-53 100-141 (429)
263 PRK06882 acetolactate synthase 40.1 65 0.0014 33.9 6.2 27 345-371 68-100 (574)
264 PF02776 TPP_enzyme_N: Thiamin 39.7 66 0.0014 27.6 5.3 27 347-373 67-99 (172)
265 COG2185 Sbm Methylmalonyl-CoA 39.6 49 0.0011 27.6 4.1 38 10-48 11-48 (143)
266 PRK14075 pnk inorganic polypho 39.1 50 0.0011 30.7 4.6 53 342-416 41-94 (256)
267 TIGR01504 glyox_carbo_lig glyo 38.9 73 0.0016 33.7 6.4 25 347-371 70-100 (588)
268 PRK05920 aromatic acid decarbo 38.9 49 0.0011 29.6 4.3 38 11-50 3-40 (204)
269 PRK07586 hypothetical protein; 38.7 67 0.0014 33.3 6.0 25 347-371 67-97 (514)
270 PRK03501 ppnK inorganic polyph 38.3 56 0.0012 30.5 4.8 53 342-416 39-97 (264)
271 PRK08617 acetolactate synthase 38.1 71 0.0015 33.4 6.2 27 346-372 69-101 (552)
272 COG2159 Predicted metal-depend 38.1 70 0.0015 30.4 5.5 93 242-360 116-210 (293)
273 PRK08760 replicative DNA helic 38.0 1.4E+02 0.003 30.7 8.0 41 13-53 231-271 (476)
274 COG3195 Uncharacterized protei 38.0 1.6E+02 0.0035 25.1 6.8 74 356-434 89-164 (176)
275 PRK12446 undecaprenyldiphospho 37.6 75 0.0016 31.1 5.9 27 342-370 91-120 (352)
276 PF10929 DUF2811: Protein of u 37.3 1.4E+02 0.003 20.6 5.4 44 403-450 7-51 (57)
277 TIGR02852 spore_dpaB dipicolin 37.3 43 0.00093 29.4 3.6 37 13-50 2-38 (187)
278 PRK12726 flagellar biosynthesi 37.2 3.7E+02 0.0081 26.8 10.3 41 12-53 207-247 (407)
279 PF05693 Glycogen_syn: Glycoge 37.0 57 0.0012 34.2 4.9 93 335-432 462-565 (633)
280 COG1663 LpxK Tetraacyldisaccha 36.9 80 0.0017 30.5 5.6 31 17-48 55-85 (336)
281 PRK06965 acetolactate synthase 36.7 78 0.0017 33.5 6.2 27 345-371 85-117 (587)
282 PRK06029 3-octaprenyl-4-hydrox 36.6 48 0.001 29.1 3.9 39 11-50 1-39 (185)
283 PF08323 Glyco_transf_5: Starc 36.5 29 0.00063 32.0 2.7 24 26-50 20-43 (245)
284 PF07429 Glyco_transf_56: 4-al 36.3 1E+02 0.0022 29.9 6.2 82 326-415 245-332 (360)
285 cd02069 methionine_synthase_B1 35.9 68 0.0015 28.9 4.8 39 10-49 87-125 (213)
286 PF07302 AroM: AroM protein; 35.5 1.8E+02 0.0039 26.3 7.3 26 115-140 175-203 (221)
287 PRK08266 hypothetical protein; 35.3 1E+02 0.0022 32.2 6.8 25 347-371 71-101 (542)
288 PF02374 ArsA_ATPase: Anion-tr 34.0 57 0.0012 31.2 4.2 40 12-52 1-41 (305)
289 TIGR03254 oxalate_oxc oxalyl-C 33.9 99 0.0021 32.4 6.4 27 345-371 66-98 (554)
290 COG0467 RAD55 RecA-superfamily 33.8 54 0.0012 30.4 4.0 41 12-53 24-64 (260)
291 COG1484 DnaC DNA replication p 33.7 46 0.00099 30.9 3.5 40 11-51 105-144 (254)
292 TIGR00708 cobA cob(I)alamin ad 33.6 3.2E+02 0.0069 23.7 11.2 35 12-47 6-40 (173)
293 PRK07064 hypothetical protein; 33.6 1E+02 0.0022 32.1 6.5 27 345-371 67-99 (544)
294 cd01124 KaiC KaiC is a circadi 33.5 3E+02 0.0065 23.5 8.6 39 14-53 2-40 (187)
295 PRK06321 replicative DNA helic 33.4 2E+02 0.0043 29.5 8.2 41 13-53 228-268 (472)
296 TIGR00750 lao LAO/AO transport 33.3 3E+02 0.0066 26.1 9.2 41 11-52 34-74 (300)
297 PRK11914 diacylglycerol kinase 33.1 1.1E+02 0.0023 29.3 6.0 27 347-373 67-97 (306)
298 TIGR03457 sulphoacet_xsc sulfo 32.8 2.9E+02 0.0062 29.1 9.7 27 345-371 65-97 (579)
299 PRK10867 signal recognition pa 32.6 2E+02 0.0044 29.1 8.0 43 11-53 100-142 (433)
300 COG1090 Predicted nucleoside-d 32.3 3.7E+02 0.008 25.4 8.8 20 29-49 12-31 (297)
301 PRK04328 hypothetical protein; 31.9 3.8E+02 0.0083 24.6 9.3 40 13-53 25-64 (249)
302 TIGR03880 KaiC_arch_3 KaiC dom 31.9 3.7E+02 0.0081 24.0 9.8 39 13-52 18-56 (224)
303 TIGR01162 purE phosphoribosyla 31.9 3.2E+02 0.007 23.2 9.8 136 259-436 3-147 (156)
304 PRK14076 pnk inorganic polypho 31.6 65 0.0014 33.9 4.5 53 342-416 348-404 (569)
305 PRK09620 hypothetical protein; 31.4 70 0.0015 29.2 4.2 37 12-49 4-52 (229)
306 PRK08006 replicative DNA helic 31.3 2.5E+02 0.0055 28.7 8.6 41 13-53 226-266 (471)
307 PRK06249 2-dehydropantoate 2-r 31.1 60 0.0013 31.1 4.0 33 11-49 5-37 (313)
308 cd07025 Peptidase_S66 LD-Carbo 31.0 86 0.0019 29.6 4.9 31 265-295 44-74 (282)
309 TIGR03600 phage_DnaB phage rep 30.8 2.4E+02 0.0052 28.3 8.4 41 13-53 196-236 (421)
310 TIGR00959 ffh signal recogniti 30.8 2E+02 0.0042 29.1 7.6 43 11-53 99-141 (428)
311 PF06180 CbiK: Cobalt chelatas 30.6 78 0.0017 29.5 4.4 39 255-293 2-43 (262)
312 PRK09107 acetolactate synthase 30.5 1.2E+02 0.0027 32.0 6.5 27 345-371 75-107 (595)
313 TIGR02201 heptsyl_trn_III lipo 30.1 5.1E+02 0.011 24.9 10.5 40 13-52 1-41 (344)
314 PRK14092 2-amino-4-hydroxy-6-h 30.1 1.2E+02 0.0026 26.0 5.1 32 253-284 6-37 (163)
315 PRK09165 replicative DNA helic 29.9 2.5E+02 0.0054 29.0 8.4 41 13-53 219-273 (497)
316 PRK06522 2-dehydropantoate 2-r 29.6 60 0.0013 30.7 3.7 31 12-48 1-31 (304)
317 PRK05748 replicative DNA helic 29.3 2.7E+02 0.0059 28.2 8.5 41 13-53 205-245 (448)
318 TIGR02113 coaC_strep phosphopa 29.1 82 0.0018 27.4 4.1 36 13-50 2-37 (177)
319 PRK11519 tyrosine kinase; Prov 28.6 3.6E+02 0.0079 29.3 9.8 38 11-49 525-564 (719)
320 TIGR03877 thermo_KaiC_1 KaiC d 28.4 4.5E+02 0.0097 23.8 9.1 40 13-53 23-62 (237)
321 PRK09259 putative oxalyl-CoA d 28.4 1.3E+02 0.0027 31.7 6.1 27 345-371 73-105 (569)
322 PLN03064 alpha,alpha-trehalose 27.9 1.9E+02 0.0041 32.4 7.4 106 332-457 446-562 (934)
323 PRK13982 bifunctional SbtC-lik 27.8 78 0.0017 32.3 4.2 39 10-49 255-305 (475)
324 PF06792 UPF0261: Uncharacteri 27.5 3.7E+02 0.008 26.8 8.6 99 253-377 184-283 (403)
325 TIGR00639 PurN phosphoribosylg 27.4 4E+02 0.0086 23.4 8.2 102 274-414 70-173 (190)
326 PRK08229 2-dehydropantoate 2-r 27.3 67 0.0014 31.1 3.6 32 11-48 2-33 (341)
327 PRK13932 stationary phase surv 27.2 1.5E+02 0.0033 27.5 5.7 41 10-53 4-44 (257)
328 PLN02924 thymidylate kinase 27.2 1.4E+02 0.0031 27.0 5.4 47 1-48 6-52 (220)
329 PRK13604 luxD acyl transferase 27.0 1.5E+02 0.0033 28.4 5.7 36 11-47 36-71 (307)
330 PRK07418 acetolactate synthase 26.9 2.1E+02 0.0045 30.5 7.4 27 345-371 86-118 (616)
331 PRK07789 acetolactate synthase 26.8 1.4E+02 0.003 31.8 6.1 27 345-371 95-127 (612)
332 PF03446 NAD_binding_2: NAD bi 26.7 68 0.0015 27.3 3.1 31 11-47 1-31 (163)
333 PRK06731 flhF flagellar biosyn 26.4 4E+02 0.0087 25.0 8.4 40 12-52 76-115 (270)
334 PF01210 NAD_Gly3P_dh_N: NAD-d 26.2 49 0.0011 28.0 2.1 30 14-49 2-31 (157)
335 PRK14618 NAD(P)H-dependent gly 26.2 86 0.0019 30.2 4.1 33 11-49 4-36 (328)
336 TIGR00147 lipid kinase, YegS/R 25.8 2E+02 0.0044 27.0 6.6 27 347-373 60-92 (293)
337 PRK06067 flagellar accessory p 25.8 1.8E+02 0.0038 26.4 5.9 40 11-51 25-64 (234)
338 PF14626 RNase_Zc3h12a_2: Zc3h 25.8 67 0.0015 25.7 2.6 28 25-53 9-36 (122)
339 COG2085 Predicted dinucleotide 25.7 1.1E+02 0.0024 27.4 4.2 34 11-50 1-34 (211)
340 PF01372 Melittin: Melittin; 25.7 12 0.00026 20.6 -1.1 17 353-369 1-17 (26)
341 PRK13054 lipid kinase; Reviewe 25.6 2.2E+02 0.0049 26.9 6.8 80 256-374 7-94 (300)
342 COG2099 CobK Precorrin-6x redu 25.5 5.5E+02 0.012 23.8 8.9 37 374-411 183-220 (257)
343 COG3245 CycB Cytochrome c5 [En 25.5 51 0.0011 26.3 1.9 52 361-414 60-122 (126)
344 cd07062 Peptidase_S66_mccF_lik 25.5 1.1E+02 0.0023 29.4 4.6 30 266-295 49-78 (308)
345 PF00551 Formyl_trans_N: Formy 25.5 1.8E+02 0.004 25.2 5.7 70 272-373 68-137 (181)
346 cd01840 SGNH_hydrolase_yrhL_li 25.5 1.3E+02 0.0027 25.1 4.6 37 254-291 51-87 (150)
347 KOG0780 Signal recognition par 25.5 6E+02 0.013 25.4 9.3 42 11-53 101-142 (483)
348 KOG4127 Renal dipeptidase [Pos 25.4 4.6E+02 0.0099 25.7 8.4 69 272-363 255-324 (419)
349 PF13450 NAD_binding_8: NAD(P) 25.2 87 0.0019 22.2 3.0 21 29-50 9-29 (68)
350 PF10727 Rossmann-like: Rossma 25.2 1.2E+02 0.0026 24.8 4.1 42 1-49 1-42 (127)
351 PRK06749 replicative DNA helic 24.8 1.7E+02 0.0037 29.6 6.0 40 13-53 188-227 (428)
352 PRK12921 2-dehydropantoate 2-r 24.6 80 0.0017 29.9 3.6 31 12-48 1-31 (305)
353 PRK12474 hypothetical protein; 24.3 1.8E+02 0.0038 30.2 6.2 25 347-371 71-101 (518)
354 PF09001 DUF1890: Domain of un 24.3 85 0.0018 25.9 3.0 26 23-49 11-36 (139)
355 PF00282 Pyridoxal_deC: Pyrido 24.0 1.3E+02 0.0028 29.8 4.9 68 347-416 106-191 (373)
356 PLN02948 phosphoribosylaminoim 24.0 8.7E+02 0.019 25.6 11.9 35 11-51 22-56 (577)
357 PRK10427 putative PTS system f 23.8 1.7E+02 0.0036 23.4 4.6 40 11-51 2-44 (114)
358 PF00289 CPSase_L_chain: Carba 23.8 1.7E+02 0.0036 23.2 4.6 23 271-293 13-35 (110)
359 PF13499 EF-hand_7: EF-hand do 23.7 63 0.0014 22.3 2.0 54 395-452 11-64 (66)
360 PRK06112 acetolactate synthase 23.7 51 0.0011 34.7 2.2 25 347-371 77-107 (578)
361 PF10093 DUF2331: Uncharacteri 23.5 1.2E+02 0.0027 29.8 4.5 36 14-49 3-38 (374)
362 TIGR03878 thermo_KaiC_2 KaiC d 23.5 5.9E+02 0.013 23.5 9.0 37 13-50 38-74 (259)
363 PRK05636 replicative DNA helic 23.5 3E+02 0.0065 28.5 7.6 41 13-53 267-307 (505)
364 PRK02645 ppnK inorganic polyph 23.4 1.8E+02 0.004 27.8 5.6 29 342-372 57-89 (305)
365 PRK06457 pyruvate dehydrogenas 23.3 1.9E+02 0.0042 30.2 6.3 25 347-371 67-97 (549)
366 COG3349 Uncharacterized conser 23.2 81 0.0018 32.2 3.3 34 12-51 1-34 (485)
367 PLN02727 NAD kinase 23.2 1.2E+02 0.0026 33.6 4.6 54 341-416 742-799 (986)
368 PRK04761 ppnK inorganic polyph 23.2 60 0.0013 29.9 2.2 28 343-372 26-57 (246)
369 PRK10964 ADP-heptose:LPS hepto 23.1 84 0.0018 30.1 3.4 39 12-50 1-40 (322)
370 PF02702 KdpD: Osmosensitive K 23.1 1.4E+02 0.0029 26.7 4.2 42 10-52 4-45 (211)
371 TIGR01281 DPOR_bchL light-inde 23.0 1.4E+02 0.003 27.7 4.8 36 12-48 1-36 (268)
372 PRK07449 2-succinyl-5-enolpyru 22.9 2.3E+02 0.005 29.7 6.9 25 347-371 75-105 (568)
373 TIGR03609 S_layer_CsaB polysac 22.7 4.5E+02 0.0098 24.7 8.3 31 338-371 246-276 (298)
374 TIGR03252 uncharacterized HhH- 22.7 1.9E+02 0.0041 25.2 5.0 56 401-460 58-123 (177)
375 PF06564 YhjQ: YhjQ protein; 22.6 1.6E+02 0.0034 27.1 4.8 37 12-49 2-39 (243)
376 PRK05579 bifunctional phosphop 22.5 1.3E+02 0.0028 30.1 4.5 39 10-50 5-43 (399)
377 PF01995 DUF128: Domain of unk 22.4 3E+02 0.0066 25.2 6.5 82 253-373 144-225 (236)
378 cd02065 B12-binding_like B12 b 22.3 1.4E+02 0.0031 23.6 4.1 35 14-49 2-36 (125)
379 PRK08840 replicative DNA helic 22.1 4.6E+02 0.0099 26.8 8.5 41 13-53 219-259 (464)
380 TIGR02655 circ_KaiC circadian 22.0 2.7E+02 0.0059 28.6 7.0 40 13-53 265-304 (484)
381 cd02032 Bchl_like This family 21.6 1.5E+02 0.0032 27.5 4.7 37 12-49 1-37 (267)
382 TIGR00421 ubiX_pad polyprenyl 21.6 96 0.0021 27.1 3.1 35 14-50 2-36 (181)
383 PRK07773 replicative DNA helic 21.5 3.9E+02 0.0085 30.0 8.5 41 13-53 219-259 (886)
384 PF02572 CobA_CobO_BtuR: ATP:c 21.5 5.4E+02 0.012 22.3 7.6 109 12-140 4-113 (172)
385 cd03412 CbiK_N Anaerobic cobal 21.4 1.5E+02 0.0033 24.0 4.1 38 255-292 2-41 (127)
386 PRK10637 cysG siroheme synthas 21.4 8.4E+02 0.018 24.8 10.3 108 336-451 66-183 (457)
387 PRK13337 putative lipid kinase 21.2 2.8E+02 0.006 26.4 6.5 27 347-373 60-92 (304)
388 PRK08327 acetolactate synthase 21.2 2.2E+02 0.0047 30.0 6.2 28 345-372 76-109 (569)
389 PRK02399 hypothetical protein; 21.1 6.4E+02 0.014 25.2 8.9 97 253-375 185-282 (406)
390 PF03358 FMN_red: NADPH-depend 21.1 1.9E+02 0.004 24.0 4.8 40 12-51 1-42 (152)
391 PF08357 SEFIR: SEFIR domain; 21.1 1.2E+02 0.0026 25.2 3.6 32 14-45 4-35 (150)
392 TIGR01162 purE phosphoribosyla 20.9 4.7E+02 0.01 22.3 6.9 50 351-413 89-140 (156)
393 COG0569 TrkA K+ transport syst 20.9 1.1E+02 0.0025 27.7 3.6 32 12-49 1-32 (225)
394 PRK04296 thymidine kinase; Pro 20.8 5.2E+02 0.011 22.5 7.7 35 13-48 3-38 (190)
395 PRK08125 bifunctional UDP-gluc 20.8 6.5E+02 0.014 27.0 9.9 31 12-48 1-31 (660)
396 PRK06719 precorrin-2 dehydroge 20.7 1.4E+02 0.003 25.3 3.8 32 12-49 14-45 (157)
397 TIGR00521 coaBC_dfp phosphopan 20.7 1.3E+02 0.0028 30.0 4.1 38 11-50 3-40 (390)
398 CHL00072 chlL photochlorophyll 20.6 1.8E+02 0.0039 27.5 5.0 37 12-49 1-37 (290)
399 PF12695 Abhydrolase_5: Alpha/ 20.5 2.3E+02 0.0051 22.6 5.2 35 14-49 1-35 (145)
400 PF10093 DUF2331: Uncharacteri 20.4 1.1E+02 0.0024 30.1 3.5 40 327-369 245-287 (374)
401 CHL00099 ilvB acetohydroxyacid 20.4 64 0.0014 34.1 2.1 26 346-371 78-109 (585)
402 TIGR02302 aProt_lowcomp conser 20.4 2.3E+02 0.0051 31.3 6.2 56 401-457 474-535 (851)
403 PRK13869 plasmid-partitioning 20.4 1.9E+02 0.0041 29.0 5.3 37 11-48 120-158 (405)
404 PF00070 Pyr_redox: Pyridine n 20.3 1.6E+02 0.0034 21.3 3.7 23 27-50 10-32 (80)
405 TIGR00064 ftsY signal recognit 20.1 2.5E+02 0.0055 26.3 5.8 42 11-53 72-113 (272)
406 PRK07313 phosphopantothenoylcy 20.1 5.9E+02 0.013 22.2 10.3 51 364-415 113-179 (182)
No 1
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.3e-64 Score=503.80 Aligned_cols=432 Identities=37% Similarity=0.706 Sum_probs=320.5
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCC-CCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLP-DNV 89 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~-~~~ 89 (462)
+.||+++|+|++||++|++.||+.|++++|+.|||++++.+.. ....... ...++.+..+|.+..+.++ .+.
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~------~~~~~~~-~~~~i~~~~lp~p~~~glp~~~~ 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAA------SAQSKFL-NSTGVDIVGLPSPDISGLVDPSA 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchh------hhhhccc-cCCCceEEECCCccccCCCCCCc
Confidence 5699999999999999999999999733499999999986543 1101001 1125888888865554554 222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCcccc-------------ccC---CC-C--
Q 012513 90 PIETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNC-------------EYR---DM-P-- 150 (462)
Q Consensus 90 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~-------------~~~---~~-~-- 150 (462)
.....+........+.+.++++++ ..+++|||+|.+++|+..+|+++||+... .+. .. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 155 (481)
T PLN02992 78 HVVTKIGVIMREAVPTLRSKIAEM--HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE 155 (481)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhc--CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc
Confidence 222223233333445555555443 23689999999999999999999991110 010 00 0
Q ss_pred -----CCccCCCCCcCCCCCCCCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcc---cCCCCCCCe
Q 012513 151 -----EPVQLPGCVPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEG---ESSFNPPPV 222 (462)
Q Consensus 151 -----~~~~~p~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~---~~~~~~p~v 222 (462)
.+..+|++++++..+++..+.++....+..+.+......+++++++|||++||+.+..++... ..... +++
T Consensus 156 ~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~-~~v 234 (481)
T PLN02992 156 HTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVAR-VPV 234 (481)
T ss_pred cccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccC-Cce
Confidence 122356766666666665433333233445555556667788999999999999999888642 11112 469
Q ss_pred EeeccCcCCCCCCCCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCccccccccc
Q 012513 223 YPVGPLIQTGSTNETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATY 302 (462)
Q Consensus 223 ~~vGpl~~~~~~~~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~ 302 (462)
+.|||++...... ..+ .+|.+||+++++++||||||||+..++.+++++++.+|+.++++|||+++.+......+.+
T Consensus 235 ~~VGPl~~~~~~~-~~~--~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~ 311 (481)
T PLN02992 235 YPIGPLCRPIQSS-KTD--HPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAY 311 (481)
T ss_pred EEecCccCCcCCC-cch--HHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccccccc
Confidence 9999997542211 122 5799999999889999999999999999999999999999999999999743110000111
Q ss_pred ccccC---CCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhh
Q 012513 303 FSVQS---MKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMN 379 (462)
Q Consensus 303 ~~~~~---~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~ 379 (462)
|.... .......+|++|.+|++++|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.|
T Consensus 312 ~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~n 391 (481)
T PLN02992 312 FSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMN 391 (481)
T ss_pred ccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHH
Confidence 11000 001123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcC--CCCChHHHHHHHHHHHhc
Q 012513 380 AVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALS--PDGSSTKSLAQVAQRWKN 456 (462)
Q Consensus 380 a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~--~~g~~~~~~~~~~~~l~~ 456 (462)
|+++++++|+|+.++.. ++.++.++|+++|+++|.+++|+++|++|+++++.+++|++ +||||++++++|+++++.
T Consensus 392 a~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 392 AALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 99996339999999752 13589999999999999988899999999999999999994 699999999999999875
No 2
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.5e-64 Score=497.88 Aligned_cols=431 Identities=38% Similarity=0.696 Sum_probs=322.3
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcC--CCCeeEEeCCCCCCCCC-CC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESL--PTSISTIFLPPVSLDDL-PD 87 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~~~~-~~ 87 (462)
+.||+++|+|++||++||+.||+.|++++|..|||++++.... .+.. ....... ..++.+..+|....+.+ +.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~--~~~~--~~~~~~~~~~~~i~~~~lp~~~~~~l~~~ 78 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSS--SPTE--TEAIHAAAARTTCQITEIPSVDVDNLVEP 78 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchh--hhcc--ccccccccCCCceEEEECCCCccccCCCC
Confidence 4599999999999999999999999865599999998775442 0000 0001111 12588888886544343 22
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCcc-c-----------c-ccC-------
Q 012513 88 NVPIETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKF-N-----------C-EYR------- 147 (462)
Q Consensus 88 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~-~-----------~-~~~------- 147 (462)
+......+........+.+.+.|+++. .+++|||+|.++.|+..+|+++||+. . + .+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~ 156 (470)
T PLN03015 79 DATIFTKMVVKMRAMKPAVRDAVKSMK--RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVV 156 (470)
T ss_pred CccHHHHHHHHHHhchHHHHHHHHhcC--CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccc
Confidence 222222333444445555666665542 36899999999999999999999931 1 0 000
Q ss_pred -C----CCCCccCCCCCcCCCCCCCCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhccc---CCCCC
Q 012513 148 -D----MPEPVQLPGCVPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGE---SSFNP 219 (462)
Q Consensus 148 -~----~~~~~~~p~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~---~~~~~ 219 (462)
. ...++.+|+++++...+++..+.++....+..+.+..+...+++++++|||++||+.+...+.... +...
T Consensus 157 ~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~- 235 (470)
T PLN03015 157 EGEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMK- 235 (470)
T ss_pred ccccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccC-
Confidence 0 011233678777777777765433332334445555566788999999999999999998887631 1112
Q ss_pred CCeEeeccCcCCCCCCCCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccc
Q 012513 220 PPVYPVGPLIQTGSTNETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAAN 299 (462)
Q Consensus 220 p~v~~vGpl~~~~~~~~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~ 299 (462)
++++.|||++...... ..+ ++|.+||++++++++|||||||+..++.+++.+++.+|+.++++|||+++.+... .
T Consensus 236 ~~v~~VGPl~~~~~~~-~~~--~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~--~ 310 (470)
T PLN03015 236 VPVYPIGPIVRTNVHV-EKR--NSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASY--L 310 (470)
T ss_pred CceEEecCCCCCcccc-cch--HHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccc--c
Confidence 4699999997432211 122 5799999999889999999999999999999999999999999999999753110 0
Q ss_pred cccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhh
Q 012513 300 ATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMN 379 (462)
Q Consensus 300 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~ 379 (462)
... +....+..+.+|++|.+|++++++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.|
T Consensus 311 ~~~--~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~n 388 (470)
T PLN03015 311 GAS--SSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMN 388 (470)
T ss_pred ccc--cccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHH
Confidence 000 000001223589999999999999988999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcccceeEEeee-cCCcccCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 012513 380 AVLLTDDLKVSFRVKV-NENGLVGREDIANYAKGLIQG--EEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWK 455 (462)
Q Consensus 380 a~rv~~~~g~G~~~~~-~~~~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 455 (462)
|+++++++|+|+++.. .+.+.+++++|+++|+++|.+ ++|+.+|+||+++++.+++|+++||||++++++++++++
T Consensus 389 a~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 389 ATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 9999666999999952 122368999999999999963 679999999999999999999999999999999999874
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.2e-64 Score=504.14 Aligned_cols=433 Identities=31% Similarity=0.528 Sum_probs=322.0
Q ss_pred CccccCCCCCCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCC
Q 012513 1 METQNSKQIPRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPV 80 (462)
Q Consensus 1 m~~~~~~~~~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 80 (462)
|...+++ +++||+++|+|++||++||+.||+.|+.+ |+.|||++++.+.. ......... .++.+..++.+
T Consensus 1 ~~~~~~~--~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~~------~~~~~~~~~-~~i~~~~lp~P 70 (477)
T PLN02863 1 MTELNKP--AGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNLP------FLNPLLSKH-PSIETLVLPFP 70 (477)
T ss_pred CcccccC--CCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcHH------HHhhhcccC-CCeeEEeCCCC
Confidence 4555544 47899999999999999999999999887 99999999986654 111111112 25777777655
Q ss_pred CCCCCCCCCchHHH----HHHHHHHHHHHHHHHHHHHhcc--CCccEEEeCCCcchHHHHHHHcCCcccc----------
Q 012513 81 SLDDLPDNVPIETR----IILTLVRSLSSLRDALKVLTES--TRLVALVVDCFGSAAFDVANELDVKFNC---------- 144 (462)
Q Consensus 81 ~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~l~~~~~~--~~~D~vI~D~~~~~~~~vA~~lgI~~~~---------- 144 (462)
....++.+.+.... ....+......+.+.+++++.+ .+++|||+|.+++|+..+|+++||+...
T Consensus 71 ~~~~lPdG~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~ 150 (477)
T PLN02863 71 SHPSIPSGVENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALS 150 (477)
T ss_pred CcCCCCCCCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHH
Confidence 44556555443222 1122333333444444444433 3679999999999999999999991110
Q ss_pred -ccC---CCC---------CC---ccCCCCCcCCCCCCCCchhh--hchHHHHHHHHHHHhhccccEEEEcchhhhcchH
Q 012513 145 -EYR---DMP---------EP---VQLPGCVPVHGRDFIEPVQQ--RKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGP 206 (462)
Q Consensus 145 -~~~---~~~---------~~---~~~p~~~p~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~ 206 (462)
.+. ..+ .. ..+|++++++..+++..+.. ........+.+........+++++|||+++|..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 230 (477)
T PLN02863 151 IMYSLWREMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIY 230 (477)
T ss_pred HHHHHhhcccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHH
Confidence 000 000 01 12566666666666654321 1112223333444444566789999999999999
Q ss_pred HHHhhcccCCCCCCCeEeeccCcCCCCCC----------CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHH
Q 012513 207 FKALMEGESSFNPPPVYPVGPLIQTGSTN----------ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELA 276 (462)
Q Consensus 207 ~~~l~~~~~~~~~p~v~~vGpl~~~~~~~----------~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~ 276 (462)
..++.... +.++++.|||++...... ...+ ++|.+||++++++++|||||||+...+.+++.+++
T Consensus 231 ~~~~~~~~---~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~--~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela 305 (477)
T PLN02863 231 LEHLKKEL---GHDRVWAVGPILPLSGEKSGLMERGGPSSVSV--DDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALA 305 (477)
T ss_pred HHHHHhhc---CCCCeEEeCCCcccccccccccccCCcccccH--HHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHH
Confidence 98886631 225799999997532100 0112 57999999998899999999999889999999999
Q ss_pred HHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchh
Q 012513 277 LGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNS 356 (462)
Q Consensus 277 ~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t 356 (462)
.+|+.++++|||+++.... .......+|++|.++.+++|+++.+|+||.+||+|++|++|||||||||
T Consensus 306 ~gL~~~~~~flw~~~~~~~------------~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS 373 (477)
T PLN02863 306 SGLEKSGVHFIWCVKEPVN------------EESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNS 373 (477)
T ss_pred HHHHhCCCcEEEEECCCcc------------cccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchH
Confidence 9999999999999985321 0011245899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Q 012513 357 ILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANA 436 (462)
Q Consensus 357 ~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~ 436 (462)
++||+++|||||++|+++||+.||+++++++|+|+++.....+.++.+++.++++++|.+ +++||+||+++++.++++
T Consensus 374 ~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~A 451 (477)
T PLN02863 374 VLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDA 451 (477)
T ss_pred HHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765899999964333457899999999999942 379999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHhcCCccCC
Q 012513 437 LSPDGSSTKSLAQVAQRWKNPEIETK 462 (462)
Q Consensus 437 ~~~~g~~~~~~~~~~~~l~~~~~~~~ 462 (462)
+++||||++++++|++++++..-+.|
T Consensus 452 v~~gGSS~~~l~~~v~~i~~~~~~~~ 477 (477)
T PLN02863 452 IKERGSSVKDLDGFVKHVVELGLEEK 477 (477)
T ss_pred hccCCcHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999998765544
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=9.4e-64 Score=497.37 Aligned_cols=414 Identities=30% Similarity=0.483 Sum_probs=312.0
Q ss_pred CccccCCCCCCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCC
Q 012513 1 METQNSKQIPRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPV 80 (462)
Q Consensus 1 m~~~~~~~~~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 80 (462)
|+..+ ++.||+++|+|++||++||++||+.|+.+ |+.|||++++.+.. ... .. ..++.+..+|+
T Consensus 1 ~~~~~----~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~-----~~~----~~-~~~i~~~~ip~- 64 (451)
T PLN02410 1 MEEKP----ARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYF-----SPS----DD-FTDFQFVTIPE- 64 (451)
T ss_pred CCcCC----CCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCccccc-----ccc----cC-CCCeEEEeCCC-
Confidence 66544 35799999999999999999999999887 99999999986542 010 11 12578887764
Q ss_pred CCCCCCCC----CchHHHHHHHHHHHHHHHHHHHHHHhc--cCCccEEEeCCCcchHHHHHHHcCCccc-----------
Q 012513 81 SLDDLPDN----VPIETRIILTLVRSLSSLRDALKVLTE--STRLVALVVDCFGSAAFDVANELDVKFN----------- 143 (462)
Q Consensus 81 ~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~l~~~~~--~~~~D~vI~D~~~~~~~~vA~~lgI~~~----------- 143 (462)
.+|.+ ......+........+.+.+.++++.. ..+++|||+|.+++|+..+|+++||+..
T Consensus 65 ---glp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~ 141 (451)
T PLN02410 65 ---SLPESDFKNLGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFV 141 (451)
T ss_pred ---CCCcccccccCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHH
Confidence 22221 111222222223444556666666532 2357999999999999999999999111
Q ss_pred cccC-----------C--C---CCCccCCCCCcCCCCCCCCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHH
Q 012513 144 CEYR-----------D--M---PEPVQLPGCVPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPF 207 (462)
Q Consensus 144 ~~~~-----------~--~---~~~~~~p~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~ 207 (462)
+.+. . . .....+|++++++..+++...+.........+ .......+++++++|||++||..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~ 220 (451)
T PLN02410 142 CRSVFDKLYANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELY-RNTVDKRTASSVIINTASCLESSSL 220 (451)
T ss_pred HHHHHHHHHhccCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHH-HHHhhcccCCEEEEeChHHhhHHHH
Confidence 0110 0 0 01123677766666666643322211112222 1122346678999999999999999
Q ss_pred HHhhcccCCCCCCCeEeeccCcCCCC--CC-CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Q 012513 208 KALMEGESSFNPPPVYPVGPLIQTGS--TN-ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQ 284 (462)
Q Consensus 208 ~~l~~~~~~~~~p~v~~vGpl~~~~~--~~-~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~ 284 (462)
.++.... + +++++|||++.... .. .... .+|.+||++++++++|||||||...++.+++.+++.+|+.+++
T Consensus 221 ~~l~~~~---~-~~v~~vGpl~~~~~~~~~~~~~~--~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~ 294 (451)
T PLN02410 221 SRLQQQL---Q-IPVYPIGPLHLVASAPTSLLEEN--KSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQ 294 (451)
T ss_pred HHHHhcc---C-CCEEEecccccccCCCccccccc--hHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCC
Confidence 8886631 2 47999999975322 11 1112 4688999999889999999999999999999999999999999
Q ss_pred ceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhC
Q 012513 285 RFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHG 364 (462)
Q Consensus 285 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~G 364 (462)
+|+|+++.+.. ...+....+|++|.+|++++++++ +|+||.+||+|++|++|||||||||++||+++|
T Consensus 295 ~FlWv~r~~~~-----------~~~~~~~~lp~~f~er~~~~g~v~-~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~G 362 (451)
T PLN02410 295 QFLWVIRPGSV-----------RGSEWIESLPKEFSKIISGRGYIV-KWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEG 362 (451)
T ss_pred CeEEEEccCcc-----------cccchhhcCChhHHHhccCCeEEE-ccCCHHHHhCCCccCeeeecCchhHHHHHHHcC
Confidence 99999985321 000111348999999998887655 899999999999999999999999999999999
Q ss_pred CceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChH
Q 012513 365 VPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSST 444 (462)
Q Consensus 365 vP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~ 444 (462)
||||++|+++||+.||+++++++|+|+.+. .. +++++|+++|+++|.+++|++||++|+++++.+++++++||||+
T Consensus 363 vP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~---~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~ 438 (451)
T PLN02410 363 VPMICKPFSSDQKVNARYLECVWKIGIQVE-GD---LDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSH 438 (451)
T ss_pred CCEEeccccccCHHHHHHHHHHhCeeEEeC-Cc---ccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999999988579999997 33 89999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 012513 445 KSLAQVAQRWKN 456 (462)
Q Consensus 445 ~~~~~~~~~l~~ 456 (462)
+++++|+++++.
T Consensus 439 ~~l~~fv~~~~~ 450 (451)
T PLN02410 439 NSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-63 Score=493.75 Aligned_cols=406 Identities=28% Similarity=0.463 Sum_probs=311.6
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCC--
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDN-- 88 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~-- 88 (462)
+.||+++|+|++||++||++||+.|+.+ |+.|||++++.+.. ... ....+++.+..+++ .++.+
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~------~~~---~~~~~~i~~~~ipd----glp~~~~ 70 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFN------TIH---LDPSSPISIATISD----GYDQGGF 70 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhh------hcc---cCCCCCEEEEEcCC----CCCCccc
Confidence 4699999999999999999999999887 99999999986543 110 01123588888874 23321
Q ss_pred --CchHHHHHH-HHHHHHHHHHHHHHHHhccCCc-cEEEeCCCcchHHHHHHHcCCcccc-----------ccC----CC
Q 012513 89 --VPIETRIIL-TLVRSLSSLRDALKVLTESTRL-VALVVDCFGSAAFDVANELDVKFNC-----------EYR----DM 149 (462)
Q Consensus 89 --~~~~~~l~~-~~~~~~~~~~~~l~~~~~~~~~-D~vI~D~~~~~~~~vA~~lgI~~~~-----------~~~----~~ 149 (462)
.+....+.. ......+.+.+.|+++....+| +|||+|.+++|+..+|+++||+... .+. ..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~ 150 (449)
T PLN02173 71 SSAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNG 150 (449)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccC
Confidence 111212222 2224445566666654322344 9999999999999999999992111 111 00
Q ss_pred CCCccCCCCCcCCCCCCCCchhhh--chHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEeecc
Q 012513 150 PEPVQLPGCVPVHGRDFIEPVQQR--KNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVGP 227 (462)
Q Consensus 150 ~~~~~~p~~~p~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vGp 227 (462)
.....+|+++++...+++..+... ....+..+.+..+...+++++++|||++||+.+..++... ++++.|||
T Consensus 151 ~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~------~~v~~VGP 224 (449)
T PLN02173 151 SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV------CPVLTIGP 224 (449)
T ss_pred CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc------CCeeEEcc
Confidence 112336777666667777655322 1123444555566677888999999999999988888542 36999999
Q ss_pred CcCCC--------CCC-----CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCc
Q 012513 228 LIQTG--------STN-----ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPH 294 (462)
Q Consensus 228 l~~~~--------~~~-----~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~ 294 (462)
+++.. ... +.....++|..||++++++++|||||||+...+.+++.+++.+| .+.+|+|++..+.
T Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~ 302 (449)
T PLN02173 225 TVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE 302 (449)
T ss_pred cCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc
Confidence 97421 000 00011146999999999899999999999999999999999999 7788999998532
Q ss_pred ccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeeccccc
Q 012513 295 EEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS 374 (462)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~ 374 (462)
. ..+|++|.++.+++|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++
T Consensus 303 ~-----------------~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~ 365 (449)
T PLN02173 303 E-----------------SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWT 365 (449)
T ss_pred h-----------------hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchh
Confidence 2 34788999888777888889999999999999999999999999999999999999999999
Q ss_pred chhhhhHHhhcccceeEEeeecC-CcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 012513 375 EQKMNAVLLTDDLKVSFRVKVNE-NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQR 453 (462)
Q Consensus 375 DQ~~~a~rv~~~~g~G~~~~~~~-~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 453 (462)
||+.||+++++++|+|+.+...+ ++.++.++|+++|+++|.+++|+.+|+||+++++.+++++++||||++++++|+++
T Consensus 366 DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~ 445 (449)
T PLN02173 366 DQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSK 445 (449)
T ss_pred cchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999998679999987543 23579999999999999998899999999999999999999999999999999998
Q ss_pred Hh
Q 012513 454 WK 455 (462)
Q Consensus 454 l~ 455 (462)
+.
T Consensus 446 ~~ 447 (449)
T PLN02173 446 IQ 447 (449)
T ss_pred hc
Confidence 84
No 6
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.8e-63 Score=494.13 Aligned_cols=418 Identities=25% Similarity=0.362 Sum_probs=312.8
Q ss_pred CCCCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCC
Q 012513 8 QIPRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPD 87 (462)
Q Consensus 8 ~~~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 87 (462)
|++++||+++|+|++||++|++.||+.|+++ ||+|||++++.+.. ..... ...+.++.+..++.+..+.++.
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~~~~------~i~~~-~a~~~~i~~~~l~~p~~dgLp~ 72 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKKAQK------QLEHH-NLFPDSIVFHPLTIPPVNGLPA 72 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccchhh------hhhcc-cCCCCceEEEEeCCCCccCCCC
Confidence 4567899999999999999999999999987 99999999886554 11111 1122346666554432234554
Q ss_pred CCchH----HHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccccc---------cCCC--C-C
Q 012513 88 NVPIE----TRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNCE---------YRDM--P-E 151 (462)
Q Consensus 88 ~~~~~----~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~~---------~~~~--~-~ 151 (462)
+.... ..+...+....+.+.+.+++++++.++||||+| ++.|+..+|+++||+.... +... . .
T Consensus 73 g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~ 151 (442)
T PLN02208 73 GAETTSDIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKL 151 (442)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCcccc
Confidence 43311 123334444555666667777666689999999 5889999999999921110 1101 0 0
Q ss_pred CccCCCCCc----CCCCCCCCchhhhchHHHHHHHHHH-HhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEeec
Q 012513 152 PVQLPGCVP----VHGRDFIEPVQQRKNKAYRFLLSFR-KQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVG 226 (462)
Q Consensus 152 ~~~~p~~~p----~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vG 226 (462)
...+|++++ +...+++.. ......+..+.... +...+++++++|||++||..+..++... ..|++++||
T Consensus 152 ~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~----~~~~v~~vG 225 (442)
T PLN02208 152 GVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQ----YHKKVLLTG 225 (442)
T ss_pred CCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhh----cCCCEEEEe
Confidence 112355543 122233321 11112233333332 3556788999999999999998888652 126899999
Q ss_pred cCcCCCCCCCCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCccccccccccccc
Q 012513 227 PLIQTGSTNETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQ 306 (462)
Q Consensus 227 pl~~~~~~~~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 306 (462)
|++.........+ ++|.+||++++++++|||||||+..++.+++.+++.+++..+.+++|+++.+..
T Consensus 226 pl~~~~~~~~~~~--~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~----------- 292 (442)
T PLN02208 226 PMFPEPDTSKPLE--EQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRG----------- 292 (442)
T ss_pred ecccCcCCCCCCH--HHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCc-----------
Confidence 9986432112233 789999999988899999999999899999999999998899999999985411
Q ss_pred CCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcc
Q 012513 307 SMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDD 386 (462)
Q Consensus 307 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~ 386 (462)
. ......+|++|.+|++++|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||++++++
T Consensus 293 ~-~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~ 371 (442)
T PLN02208 293 S-STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEE 371 (442)
T ss_pred c-cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHH
Confidence 0 011245899999999999999999999999999999999999999999999999999999999999999999997776
Q ss_pred cceeEEeeecCCcccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCC
Q 012513 387 LKVSFRVKVNENGLVGREDIANYAKGLIQGE--EGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKNPE 458 (462)
Q Consensus 387 ~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 458 (462)
+|+|+++...+.+.+++++|+++|+++|+++ +|+.+|++|+++++.+. ++|||++++++|++++++..
T Consensus 372 ~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~~ 441 (442)
T PLN02208 372 FEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEYL 441 (442)
T ss_pred hceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHhc
Confidence 9999999754334689999999999999864 48899999999999985 58899999999999998753
No 7
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=6.9e-63 Score=496.15 Aligned_cols=433 Identities=35% Similarity=0.631 Sum_probs=318.1
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCC----CEEEEEeCCCCCCCCCCCchhhhhhh---cCCCCeeEEeCCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHN----FLVSIFIPTIDDGTGSFMQPQRQVLE---SLPTSISTIFLPPVSLD 83 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~G----H~Vt~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~l~~~~~~ 83 (462)
+.||+|+|+|++||++||+.||+.|+.+ | +.|||++++.+... + ......... ....++.+..+|+..
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~-~-~~~~~~~~~~~~~~~~~i~~~~lp~~~-- 77 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPE-S-ASEVAAHVRREAASGLDIRFHHLPAVE-- 77 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccc-h-hHHHHHHHhhcccCCCCEEEEECCCCC--
Confidence 5699999999999999999999999887 6 79999998764320 0 001111111 111158889888643
Q ss_pred CCCCCCchHHHHH-HHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCcccc-------------cc---
Q 012513 84 DLPDNVPIETRII-LTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNC-------------EY--- 146 (462)
Q Consensus 84 ~~~~~~~~~~~l~-~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~-------------~~--- 146 (462)
.+.+.+....+. .......+.+.+.++++ ..+++|||+|.++.|+..+|+++||+... .+
T Consensus 78 -~p~~~e~~~~~~~~~~~~~~~~l~~~L~~l--~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 78 -PPTDAAGVEEFISRYIQLHAPHVRAAIAGL--SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred -CCCccccHHHHHHHHHHhhhHHHHHHHHhc--CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 233332222222 22333334444444433 12569999999999999999999991110 00
Q ss_pred CCC--------CCCccCCCCCcCCCCCCCCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCC--
Q 012513 147 RDM--------PEPVQLPGCVPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESS-- 216 (462)
Q Consensus 147 ~~~--------~~~~~~p~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~-- 216 (462)
... ..+..+||+++++..+++..+..+....+..+....+...+++++++|||++||+.+..++......
T Consensus 155 ~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~ 234 (480)
T PLN00164 155 DEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPG 234 (480)
T ss_pred cccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhcccccc
Confidence 000 0112367776677777776554332223344444455667788999999999999999888764210
Q ss_pred CCCCCeEeeccCcCCC--CCCCCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCc
Q 012513 217 FNPPPVYPVGPLIQTG--STNETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPH 294 (462)
Q Consensus 217 ~~~p~v~~vGpl~~~~--~~~~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~ 294 (462)
...|+++.|||++... +.....+ ++|.+||++++++++|||||||+...+.+++.+++.+|+.++++|||+++...
T Consensus 235 ~~~~~v~~vGPl~~~~~~~~~~~~~--~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~ 312 (480)
T PLN00164 235 RPAPTVYPIGPVISLAFTPPAEQPP--HECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPP 312 (480)
T ss_pred CCCCceEEeCCCccccccCCCccch--HHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 0125899999997422 1111222 67999999998899999999999889999999999999999999999998532
Q ss_pred ccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeeccccc
Q 012513 295 EEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS 374 (462)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~ 374 (462)
.. ..+.... .+....+|++|.++++++++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++
T Consensus 313 ~~----~~~~~~~-~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~ 387 (480)
T PLN00164 313 AA----GSRHPTD-ADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYA 387 (480)
T ss_pred cc----ccccccc-cchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccc
Confidence 10 0000000 011224889999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHhhcccceeEEeeecC--CcccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 012513 375 EQKMNAVLLTDDLKVSFRVKVNE--NGLVGREDIANYAKGLIQGE--EGKLLRKKMRALKDAAANALSPDGSSTKSLAQV 450 (462)
Q Consensus 375 DQ~~~a~rv~~~~g~G~~~~~~~--~~~~~~~~l~~ai~~vl~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 450 (462)
||+.||+++++++|+|+.+...+ ++.+++++|+++|+++|.++ +|+.+|+||+++++.+++++++||||++++++|
T Consensus 388 DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~ 467 (480)
T PLN00164 388 EQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRL 467 (480)
T ss_pred cchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999998765499999986431 23579999999999999875 489999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 012513 451 AQRWKNPE 458 (462)
Q Consensus 451 ~~~l~~~~ 458 (462)
+++++...
T Consensus 468 v~~~~~~~ 475 (480)
T PLN00164 468 AREIRHGA 475 (480)
T ss_pred HHHHHhcc
Confidence 99998653
No 8
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.7e-62 Score=490.02 Aligned_cols=421 Identities=28% Similarity=0.476 Sum_probs=311.9
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhc--CC---CCeeEEeCCCCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLES--LP---TSISTIFLPPVSLDDL 85 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~--~~---~~i~~~~l~~~~~~~~ 85 (462)
+.||+++|+|++||++||+.||+.|+.+ |..|||++++.+.. .+.... ..... .+ ..+.|..+++ .+
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~--~~~~a~-~~~~~~~~~~~~~~i~~~~~pd----gl 78 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGK--KMRQAN-KIQDGVLKPVGDGFIRFEFFED----GW 78 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhh--hhhccc-cccccccccCCCCeEEEeeCCC----CC
Confidence 4699999999999999999999999887 99999999986544 110000 00000 11 1244544442 22
Q ss_pred CCCCc---hHHHHHH-HHHHHHHHHHHHHHHHhccCC-ccEEEeCCCcchHHHHHHHcCCcccc-------------cc-
Q 012513 86 PDNVP---IETRIIL-TLVRSLSSLRDALKVLTESTR-LVALVVDCFGSAAFDVANELDVKFNC-------------EY- 146 (462)
Q Consensus 86 ~~~~~---~~~~l~~-~~~~~~~~~~~~l~~~~~~~~-~D~vI~D~~~~~~~~vA~~lgI~~~~-------------~~- 146 (462)
+.+.+ ....+.. ......+.+.+.|+++....+ ++|||+|.++.|+..+|+++||+... .+
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 79 AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 22211 1222222 222344555666655422223 49999999999999999999992110 00
Q ss_pred C---CCC------CCccCCCCCcCCCCCCCCchhh--hchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccC
Q 012513 147 R---DMP------EPVQLPGCVPVHGRDFIEPVQQ--RKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGES 215 (462)
Q Consensus 147 ~---~~~------~~~~~p~~~p~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~ 215 (462)
. ... .+..+|+++++...+++..+.. .....+..+.+......+++++++|||++||..+...+...
T Consensus 159 ~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~-- 236 (480)
T PLN02555 159 HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL-- 236 (480)
T ss_pred hcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC--
Confidence 0 001 1234688777777777765431 22223444555566677888999999999999998888652
Q ss_pred CCCCCCeEeeccCcCCCC---C---C--CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceE
Q 012513 216 SFNPPPVYPVGPLIQTGS---T---N--ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFL 287 (462)
Q Consensus 216 ~~~~p~v~~vGpl~~~~~---~---~--~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i 287 (462)
.| ++.|||++.... . . +..+ ++|.+||++++++++|||||||+..++.+++.+++.+|+..+++||
T Consensus 237 ---~~-v~~iGPl~~~~~~~~~~~~~~~~~~~--~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~fl 310 (480)
T PLN02555 237 ---CP-IKPVGPLFKMAKTPNSDVKGDISKPA--DDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFL 310 (480)
T ss_pred ---CC-EEEeCcccCccccccccccccccccc--hhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEE
Confidence 24 999999975321 1 0 1122 6799999999888999999999999999999999999999999999
Q ss_pred EEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCce
Q 012513 288 WVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPI 367 (462)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~ 367 (462)
|+++.... .. ......+|+++.++.++++. +.+|+||.+||.|++|++|||||||||++||+++||||
T Consensus 311 W~~~~~~~---------~~--~~~~~~lp~~~~~~~~~~g~-v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~ 378 (480)
T PLN02555 311 WVMRPPHK---------DS--GVEPHVLPEEFLEKAGDKGK-IVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPV 378 (480)
T ss_pred EEEecCcc---------cc--cchhhcCChhhhhhcCCceE-EEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCE
Confidence 99974211 00 00123578889888876664 55999999999999999999999999999999999999
Q ss_pred eecccccchhhhhHHhhcccceeEEeeec--CCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 012513 368 IAWPLYSEQKMNAVLLTDDLKVSFRVKVN--ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTK 445 (462)
Q Consensus 368 v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~--~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~ 445 (462)
|++|+++||+.||+++++++|+|+++... +.+.+++++|.++|+++|.+++|+++|+||++|++.+++|+++||||++
T Consensus 379 l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~ 458 (480)
T PLN02555 379 VCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDR 458 (480)
T ss_pred EeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999999999998867999999531 1235899999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCc
Q 012513 446 SLAQVAQRWKNPEI 459 (462)
Q Consensus 446 ~~~~~~~~l~~~~~ 459 (462)
++++||+++++..+
T Consensus 459 ~l~~~v~~i~~~~~ 472 (480)
T PLN02555 459 NFQEFVDKLVRKSV 472 (480)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999987644
No 9
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-62 Score=489.65 Aligned_cols=422 Identities=26% Similarity=0.439 Sum_probs=314.5
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNV 89 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 89 (462)
.+.||+++|+|++||++||++||+.|+++ |+.|||++++.+.. ...........++.++.++.+..++++.+.
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~------~~~~~~~~~~~~i~~~~lp~p~~dglp~~~ 77 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLH------RLPKIPSQLSSSITLVSFPLPSVPGLPSSA 77 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHH------hhhhccccCCCCeeEEECCCCccCCCCCCc
Confidence 36799999999999999999999999987 99999999986653 111111112335888888865444555433
Q ss_pred chHHHH----HHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCcccc-----------cc-C------
Q 012513 90 PIETRI----ILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNC-----------EY-R------ 147 (462)
Q Consensus 90 ~~~~~l----~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~-----------~~-~------ 147 (462)
+....+ ...+......+++.+++++++.+++|||+|.++.|+..+|+++||+... .+ .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~ 157 (472)
T PLN02670 78 ESSTDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG 157 (472)
T ss_pred ccccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc
Confidence 221111 1233344445566666666555789999999999999999999991110 10 0
Q ss_pred ----CCCCCc-cCCCCCcCC------CCCCCCchhhh--chHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhccc
Q 012513 148 ----DMPEPV-QLPGCVPVH------GRDFIEPVQQR--KNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGE 214 (462)
Q Consensus 148 ----~~~~~~-~~p~~~p~~------~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~ 214 (462)
...... .+|+..|.+ ..+++..+... ....+..+.+......+++++++|||++||+.+...+....
T Consensus 158 ~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~ 237 (472)
T PLN02670 158 GDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLY 237 (472)
T ss_pred ccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhh
Confidence 000111 134433321 12333332111 11123333444445667889999999999999999987621
Q ss_pred CCCCCCCeEeeccCcCCC-C--CCCC----CCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceE
Q 012513 215 SSFNPPPVYPVGPLIQTG-S--TNET----NKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFL 287 (462)
Q Consensus 215 ~~~~~p~v~~vGpl~~~~-~--~~~~----~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i 287 (462)
+ ++++.|||+.... . .... .. ++|.+||+++++++||||||||+..++.+++.+++.+|+.++++||
T Consensus 238 ---~-~~v~~VGPl~~~~~~~~~~~~~~~~~~--~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~Fl 311 (472)
T PLN02670 238 ---R-KPIIPIGFLPPVIEDDEEDDTIDVKGW--VRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFF 311 (472)
T ss_pred ---C-CCeEEEecCCccccccccccccccchh--HHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEE
Confidence 1 4799999997531 1 1100 11 4689999999889999999999999999999999999999999999
Q ss_pred EEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCce
Q 012513 288 WVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPI 367 (462)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~ 367 (462)
|+++.... ........+|++|.++++++++++.+|+||.+||+|++|++|||||||||++||+++||||
T Consensus 312 Wv~r~~~~-----------~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~ 380 (472)
T PLN02670 312 WVLRNEPG-----------TTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVL 380 (472)
T ss_pred EEEcCCcc-----------cccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCE
Confidence 99985321 0001123589999999999999999999999999999999999999999999999999999
Q ss_pred eecccccchhhhhHHhhcccceeEEeeecC-CcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 012513 368 IAWPLYSEQKMNAVLLTDDLKVSFRVKVNE-NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKS 446 (462)
Q Consensus 368 v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~-~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~ 446 (462)
|++|+++||+.||+++++ +|+|+++...+ ++.+++++|+++|+++|.+++|++||+||+++++.+++ .+...+.
T Consensus 381 l~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~ 455 (472)
T PLN02670 381 ILFPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRY 455 (472)
T ss_pred EeCcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHH
Confidence 999999999999999998 99999997533 34689999999999999988889999999999999994 6778889
Q ss_pred HHHHHHHHhcCCcc
Q 012513 447 LAQVAQRWKNPEIE 460 (462)
Q Consensus 447 ~~~~~~~l~~~~~~ 460 (462)
+++|+++|+....+
T Consensus 456 ~~~~~~~l~~~~~~ 469 (472)
T PLN02670 456 VDELVHYLRENRSS 469 (472)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999887643
No 10
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=9.7e-63 Score=489.44 Aligned_cols=418 Identities=24% Similarity=0.386 Sum_probs=309.0
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNV 89 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 89 (462)
.+.||+++|+|++||++||+.||+.|+++ |++|||++++.+.. ..... ...+.++.+..++.+..+.++.+.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~------~i~~~-~~~~~~i~~~~i~lP~~dGLP~g~ 74 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKKAHK------QLQPL-NLFPDSIVFEPLTLPPVDGLPFGA 74 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCchhh------hhccc-ccCCCceEEEEecCCCcCCCCCcc
Confidence 46799999999999999999999999987 99999999986543 11111 112234777555433334555543
Q ss_pred chHH----HHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCcccc-----------ccCCCCC-Cc
Q 012513 90 PIET----RIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNC-----------EYRDMPE-PV 153 (462)
Q Consensus 90 ~~~~----~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~-----------~~~~~~~-~~ 153 (462)
+... .+...+....+.+.+.+++++...++||||+|. ++|+..+|+++||+... .+..... ..
T Consensus 75 e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~ 153 (446)
T PLN00414 75 ETASDLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGF 153 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCC
Confidence 3221 112334445556667777776666889999995 89999999999992111 1110000 01
Q ss_pred cCCCCCc----CCCCCC--CCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEeecc
Q 012513 154 QLPGCVP----VHGRDF--IEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVGP 227 (462)
Q Consensus 154 ~~p~~~p----~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vGp 227 (462)
.+|+++. ++..+. +.. .++. ...+.+......+++++++|||++||..+..++.+. ..++++.|||
T Consensus 154 ~~pg~p~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~----~~~~v~~VGP 225 (446)
T PLN00414 154 PPPDYPLSKVALRGHDANVCSL-FANS---HELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQ----CQRKVLLTGP 225 (446)
T ss_pred CCCCCCCCcCcCchhhcccchh-hccc---HHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHh----cCCCeEEEcc
Confidence 1244321 111111 111 1111 122333345556788999999999999999888762 1247999999
Q ss_pred CcCCCCCC--CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccc
Q 012513 228 LIQTGSTN--ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSV 305 (462)
Q Consensus 228 l~~~~~~~--~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~ 305 (462)
+....... .... ++|.+|||++++++||||||||....+.+++.++..+|+..+.+|+|++..+..
T Consensus 226 l~~~~~~~~~~~~~--~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~---------- 293 (446)
T PLN00414 226 MLPEPQNKSGKPLE--DRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKG---------- 293 (446)
T ss_pred cCCCcccccCcccH--HHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCC----------
Confidence 97533211 1112 568899999999999999999999999999999999999999999999986321
Q ss_pred cCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhc
Q 012513 306 QSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTD 385 (462)
Q Consensus 306 ~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~ 385 (462)
. .+..+.+|++|.+|++++++++.+|+||.+||+|++|++|||||||||++||+++|||||++|++.||+.||+++++
T Consensus 294 -~-~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~ 371 (446)
T PLN00414 294 -S-STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTE 371 (446)
T ss_pred -c-ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHH
Confidence 0 01124589999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccceeEEeeecCCcccCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCCccCC
Q 012513 386 DLKVSFRVKVNENGLVGREDIANYAKGLIQG--EEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKNPEIETK 462 (462)
Q Consensus 386 ~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~ 462 (462)
++|+|+++...+.+.+++++|+++++++|.+ ++|+.+|++|+++++.+.+ +||++ ..+++|++++++..+.+|
T Consensus 372 ~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~~~~~~~~ 446 (446)
T PLN00414 372 ELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALENEVNNTK 446 (446)
T ss_pred HhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHHhcccCC
Confidence 5999999965333458999999999999986 3488899999999999754 67734 338999999999988776
No 11
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-62 Score=488.58 Aligned_cols=418 Identities=29% Similarity=0.581 Sum_probs=310.2
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCC--CEEEEEeCCCCCCCCCCCchhhhhhh---cCCCCeeEEeCCCCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHN--FLVSIFIPTIDDGTGSFMQPQRQVLE---SLPTSISTIFLPPVSLDDL 85 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~G--H~Vt~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~l~~~~~~~~ 85 (462)
+.||+++|+|++||++||+.||+.|+.+ | ..|||++++.+.. ........ ...+++.+..+|+......
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~-----~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 76 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQ-----SHLDTYVKSIASSQPFVRFIDVPELEEKPT 76 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcc-----hhhHHhhhhccCCCCCeEEEEeCCCCCCCc
Confidence 3599999999999999999999999887 8 9999999986541 01111111 1112589999884321111
Q ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHHHhcc----CC-ccEEEeCCCcchHHHHHHHcCCcccc-------------cc
Q 012513 86 -PDNVPIETRIILTLVRSLSSLRDALKVLTES----TR-LVALVVDCFGSAAFDVANELDVKFNC-------------EY 146 (462)
Q Consensus 86 -~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~----~~-~D~vI~D~~~~~~~~vA~~lgI~~~~-------------~~ 146 (462)
....+....+........+.+++.+++++++ .+ ++|||+|.+++|+..+|+++||+... .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~ 156 (468)
T PLN02207 77 LGGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYL 156 (468)
T ss_pred cccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHh
Confidence 1111112223233333333334444444332 13 48999999999999999999991110 00
Q ss_pred ---CCCC---------CCccCCCC-CcCCCCCCCCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcc
Q 012513 147 ---RDMP---------EPVQLPGC-VPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEG 213 (462)
Q Consensus 147 ---~~~~---------~~~~~p~~-~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~ 213 (462)
.... .+..+||+ +++..++++..+.... .+..+.+......+.+++++||++++|..+...+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~ 234 (468)
T PLN02207 157 ADRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED--GYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDE 234 (468)
T ss_pred hhccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc--cHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhc
Confidence 0000 11236776 4677777776542211 1334445555677888999999999999988887542
Q ss_pred cCCCCCCCeEeeccCcCCCCCCC-----CCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEE
Q 012513 214 ESSFNPPPVYPVGPLIQTGSTNE-----TNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLW 288 (462)
Q Consensus 214 ~~~~~~p~v~~vGpl~~~~~~~~-----~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~ 288 (462)
+ ..|+++.|||++....... ... ++|.+||++++++++|||||||...++.+++++++.+|+.++++|||
T Consensus 235 ~---~~p~v~~VGPl~~~~~~~~~~~~~~~~--~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW 309 (468)
T PLN02207 235 Q---NYPSVYAVGPIFDLKAQPHPEQDLARR--DELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLW 309 (468)
T ss_pred c---CCCcEEEecCCcccccCCCCccccchh--hHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEE
Confidence 1 2368999999975322111 112 57999999998889999999999999999999999999999999999
Q ss_pred EEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCcee
Q 012513 289 VAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPII 368 (462)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v 368 (462)
+++.... ...+.+|++|.+|.++++++ .+|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 310 ~~r~~~~--------------~~~~~lp~~f~er~~~~g~i-~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l 374 (468)
T PLN02207 310 SLRTEEV--------------TNDDLLPEGFLDRVSGRGMI-CGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIV 374 (468)
T ss_pred EEeCCCc--------------cccccCCHHHHhhcCCCeEE-EEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEE
Confidence 9985321 11235899999998877755 49999999999999999999999999999999999999
Q ss_pred ecccccchhhhhHHhhcccceeEEeeec----CCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChH
Q 012513 369 AWPLYSEQKMNAVLLTDDLKVSFRVKVN----ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSST 444 (462)
Q Consensus 369 ~~P~~~DQ~~~a~rv~~~~g~G~~~~~~----~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~ 444 (462)
++|+++||+.||+++++++|+|+++... .++.+++++|+++|+++|.+ ++++||+||+++++.+++|+++||||+
T Consensus 375 ~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~ 453 (468)
T PLN02207 375 TWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSF 453 (468)
T ss_pred ecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999877769999987421 12346999999999999973 468999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 012513 445 KSLAQVAQRWKNP 457 (462)
Q Consensus 445 ~~~~~~~~~l~~~ 457 (462)
+++++|+++++..
T Consensus 454 ~~l~~~v~~~~~~ 466 (468)
T PLN02207 454 AAIEKFIHDVIGI 466 (468)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.9e-62 Score=489.97 Aligned_cols=405 Identities=27% Similarity=0.459 Sum_probs=301.2
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHH--HHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKR--LVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPD 87 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~--L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 87 (462)
.+.||+|+|+|++||++|++.||++ |+++ |+.|||++++.+.. ..... ......+.+..+++ .++.
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~-G~~VT~v~t~~~~~------~~~~~-~~~~~~~~~~~~~~----glp~ 74 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSK-NLHFTLATTEQARD------LLSTV-EKPRRPVDLVFFSD----GLPK 74 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcC-CcEEEEEeccchhh------hhccc-cCCCCceEEEECCC----CCCC
Confidence 3579999999999999999999999 5476 99999999997654 11110 01112456655542 3333
Q ss_pred CC-chHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccc-----------cccC--C----C
Q 012513 88 NV-PIETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFN-----------CEYR--D----M 149 (462)
Q Consensus 88 ~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~-----------~~~~--~----~ 149 (462)
+. ..... ++....+.+.+.+++++++.++||||+|.+++|+..+|+++||+.. +.+. . .
T Consensus 75 ~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~ 151 (456)
T PLN02210 75 DDPRAPET---LLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSF 151 (456)
T ss_pred CcccCHHH---HHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCC
Confidence 32 11211 2222222334445555555589999999999999999999999211 0100 0 0
Q ss_pred C------CCccCCCCCcCCCCCCCCchhhhchHHHHHHHHHH-HhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCe
Q 012513 150 P------EPVQLPGCVPVHGRDFIEPVQQRKNKAYRFLLSFR-KQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPV 222 (462)
Q Consensus 150 ~------~~~~~p~~~p~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v 222 (462)
. ....+|+++++...+++..+.......+....... +.....+++++||++++|..+...+... +++
T Consensus 152 ~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~------~~v 225 (456)
T PLN02210 152 PDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL------KPV 225 (456)
T ss_pred CcccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc------CCE
Confidence 0 11235666555555666544333222233333222 3455678999999999999998888662 479
Q ss_pred EeeccCcCC----C-CCC---------CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEE
Q 012513 223 YPVGPLIQT----G-STN---------ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLW 288 (462)
Q Consensus 223 ~~vGpl~~~----~-~~~---------~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~ 288 (462)
++|||++.. . ... +..+ ++|.+||++++++++|||||||....+.+++++++.+|+.++.+|||
T Consensus 226 ~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw 303 (456)
T PLN02210 226 IPIGPLVSPFLLGDDEEETLDGKNLDMCKSD--DCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLW 303 (456)
T ss_pred EEEcccCchhhcCcccccccccccccccccc--hHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 999999742 1 100 1122 56899999998889999999999889999999999999999999999
Q ss_pred EEeCCcccccccccccccCCCCCCCCCChhHHHhhC-CCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCce
Q 012513 289 VAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK-GVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPI 367 (462)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~ 367 (462)
+++.... ...++++.++.+ ++++ +.+|+||.+||+|++|++|||||||||++||+++||||
T Consensus 304 ~~~~~~~-----------------~~~~~~~~~~~~~~~g~-v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~ 365 (456)
T PLN02210 304 VIRPKEK-----------------AQNVQVLQEMVKEGQGV-VLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPV 365 (456)
T ss_pred EEeCCcc-----------------ccchhhHHhhccCCCeE-EEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCE
Confidence 9985321 112345555553 5565 55999999999999999999999999999999999999
Q ss_pred eecccccchhhhhHHhhcccceeEEeeecC-CcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 012513 368 IAWPLYSEQKMNAVLLTDDLKVSFRVKVNE-NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKS 446 (462)
Q Consensus 368 v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~-~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~ 446 (462)
|++|+++||+.||+++++++|+|+++...+ ++.+++++|+++|+++|.+++|+++|+||+++++.+++|+++||||+++
T Consensus 366 v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~ 445 (456)
T PLN02210 366 VAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARN 445 (456)
T ss_pred EecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999999999987689999996432 3468999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 012513 447 LAQVAQRWK 455 (462)
Q Consensus 447 ~~~~~~~l~ 455 (462)
+++|+++++
T Consensus 446 l~~~v~~~~ 454 (456)
T PLN02210 446 LDLFISDIT 454 (456)
T ss_pred HHHHHHHHh
Confidence 999999986
No 13
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.3e-62 Score=483.53 Aligned_cols=418 Identities=25% Similarity=0.380 Sum_probs=308.3
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCC--CCeeEEeCCCCCCCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLP--TSISTIFLPPVSLDDLPDN 88 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~l~~~~~~~~~~~ 88 (462)
++||+++|+|++||++||+.||+.|+.+ |+.|||++++.+.. ..... ...+ ..+.+..+|.. +.++.+
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~~------~~~~~-~~~~~~~~v~~~~~p~~--~glp~g 74 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKALK------QLEHL-NLFPHNIVFRSVTVPHV--DGLPVG 74 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchhh------hhccc-ccCCCCceEEEEECCCc--CCCCCc
Confidence 6899999999999999999999999887 99999999986543 11111 1112 13666667632 244444
Q ss_pred CchH----HHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccc-----------cccCCCCC-C
Q 012513 89 VPIE----TRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFN-----------CEYRDMPE-P 152 (462)
Q Consensus 89 ~~~~----~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~-----------~~~~~~~~-~ 152 (462)
.+.+ ......+......+++.+++++++.++||||+|. +.|+..+|+++||+.. +.+..... .
T Consensus 75 ~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 153 (453)
T PLN02764 75 TETVSEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPGGELG 153 (453)
T ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCC
Confidence 2221 1112223333444555555555555789999995 8999999999999111 11111101 0
Q ss_pred ccCCCCCc----CCCCCCCCchh-hh--chHHHHHHHHHH-HhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEe
Q 012513 153 VQLPGCVP----VHGRDFIEPVQ-QR--KNKAYRFLLSFR-KQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYP 224 (462)
Q Consensus 153 ~~~p~~~p----~~~~~~~~~~~-~r--~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~ 224 (462)
..+|+++. +...+++.... .+ ....+..+.... +.....+++++|||++||..+..++... ..++++.
T Consensus 154 ~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~----~~~~v~~ 229 (453)
T PLN02764 154 VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH----CRKKVLL 229 (453)
T ss_pred CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh----cCCcEEE
Confidence 12355531 22333332110 01 111122233333 5566788999999999999999888662 1247999
Q ss_pred eccCcCCCCCCCCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCccccccccccc
Q 012513 225 VGPLIQTGSTNETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFS 304 (462)
Q Consensus 225 vGpl~~~~~~~~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 304 (462)
|||++.......... ++|.+|||++++++||||||||...++.+++.++..+|+..+.+|+|+++.+..
T Consensus 230 VGPL~~~~~~~~~~~--~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~--------- 298 (453)
T PLN02764 230 TGPVFPEPDKTRELE--ERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRG--------- 298 (453)
T ss_pred eccCccCccccccch--hHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCC---------
Confidence 999975331111122 689999999999999999999998899999999999999999999999985321
Q ss_pred ccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhh
Q 012513 305 VQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLT 384 (462)
Q Consensus 305 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~ 384 (462)
. ......+|++|.+|++++++++.+|+||.+||+|++|++|||||||||++||+++|||||++|++.||+.||++++
T Consensus 299 --~-~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~ 375 (453)
T PLN02764 299 --S-STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS 375 (453)
T ss_pred --C-cchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH
Confidence 0 0112458999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccceeEEeeecCCcccCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCCccC
Q 012513 385 DDLKVSFRVKVNENGLVGREDIANYAKGLIQG--EEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKNPEIET 461 (462)
Q Consensus 385 ~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~ 461 (462)
+++|+|+.+..++.+.+++++|+++|+++|++ ++|+.+|++++++++.++ ++|||++++++|+++|++....+
T Consensus 376 ~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~~~~~~ 450 (453)
T PLN02764 376 DELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQDLVSGT 450 (453)
T ss_pred HHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHhcccc
Confidence 66999999854322358999999999999987 458899999999999997 69999999999999999986554
No 14
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3e-62 Score=488.85 Aligned_cols=422 Identities=29% Similarity=0.487 Sum_probs=311.4
Q ss_pred CCCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhh-c--CCCCeeEEeCCCCCC-CC
Q 012513 9 IPRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLE-S--LPTSISTIFLPPVSL-DD 84 (462)
Q Consensus 9 ~~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~-~--~~~~i~~~~l~~~~~-~~ 84 (462)
.++.||+++|+|++||++||+.||+.|+++ |+.|||++++.+.. ....... . .+..+.++.+|.+.. +.
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~------~~~~~~~~~~~~~~~i~~~~lp~p~~~dg 78 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNAS------RFAKTIDRARESGLPIRLVQIPFPCKEVG 78 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHH------HHhhhhhhccccCCCeEEEEcCCCCccCC
Confidence 446799999999999999999999999887 99999999986543 1111111 0 111388888875432 24
Q ss_pred CCCCCchHH-----HHHHHHHHHHHHHHHHHHHHhcc--CCccEEEeCCCcchHHHHHHHcCCccccc------------
Q 012513 85 LPDNVPIET-----RIILTLVRSLSSLRDALKVLTES--TRLVALVVDCFGSAAFDVANELDVKFNCE------------ 145 (462)
Q Consensus 85 ~~~~~~~~~-----~l~~~~~~~~~~~~~~l~~~~~~--~~~D~vI~D~~~~~~~~vA~~lgI~~~~~------------ 145 (462)
++.+.+... .+...+......+++.+++++.+ .+++|||+|.++.|+..+|+++||+....
T Consensus 79 lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~ 158 (491)
T PLN02534 79 LPIGCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSH 158 (491)
T ss_pred CCCCccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence 444322111 22222333334455555655543 36799999999999999999999911100
Q ss_pred --c-C-------CCCCCccCCCCCc---CCCCCCCCchhhhchHHHHHHHHHHHhh-ccccEEEEcchhhhcchHHHHhh
Q 012513 146 --Y-R-------DMPEPVQLPGCVP---VHGRDFIEPVQQRKNKAYRFLLSFRKQY-HLAAGIMVNSFMELETGPFKALM 211 (462)
Q Consensus 146 --~-~-------~~~~~~~~p~~~p---~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~l~~s~~~l~~~~~~~l~ 211 (462)
+ . ....++.+|++++ +...+++..+... ..+..+...+... ..++++++|||++||+.+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~ 236 (491)
T PLN02534 159 NIRLHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYE 236 (491)
T ss_pred HHHHhcccccCCCCCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHH
Confidence 0 0 0001223556542 3344444432111 1123333333332 34678999999999999998886
Q ss_pred cccCCCCCCCeEeeccCcCCCCC-------C--C-CCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 012513 212 EGESSFNPPPVYPVGPLIQTGST-------N--E-TNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEM 281 (462)
Q Consensus 212 ~~~~~~~~p~v~~vGpl~~~~~~-------~--~-~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~ 281 (462)
... + ++++.|||+...... . . .+. ++|..||++++++++|||||||.....++++.+++.+|+.
T Consensus 237 ~~~---~-~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~--~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~ 310 (491)
T PLN02534 237 KAI---K-KKVWCVGPVSLCNKRNLDKFERGNKASIDE--TQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEA 310 (491)
T ss_pred hhc---C-CcEEEECcccccccccccccccCCccccch--HHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 531 2 479999999742110 0 0 112 4699999999989999999999999999999999999999
Q ss_pred CCCceEEEEeCCcccccccccccccCCCCCC-CCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHH
Q 012513 282 SGQRFLWVAKSPHEEAANATYFSVQSMKDPL-DFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILES 360 (462)
Q Consensus 282 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~ea 360 (462)
++++|+|+++.+.. ..+.. ..+|++|.++++++|+++.+|+||.+||+|++|++|||||||||++||
T Consensus 311 ~~~~flW~~r~~~~------------~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea 378 (491)
T PLN02534 311 SKKPFIWVIKTGEK------------HSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEG 378 (491)
T ss_pred CCCCEEEEEecCcc------------ccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHH
Confidence 99999999985321 00011 136899998988889998899999999999999999999999999999
Q ss_pred HHhCCceeecccccchhhhhHHhhcccceeEEeeec-------C-C-c-ccCHHHHHHHHHHHhc--CchHHHHHHHHHH
Q 012513 361 IVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN-------E-N-G-LVGREDIANYAKGLIQ--GEEGKLLRKKMRA 428 (462)
Q Consensus 361 l~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~-------~-~-~-~~~~~~l~~ai~~vl~--~~~~~~~r~~a~~ 428 (462)
+++|||||++|+++||+.||+++++++|+|+++... + + + .+++++|+++|+++|. +++|+++|+||++
T Consensus 379 ~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~e 458 (491)
T PLN02534 379 ICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQE 458 (491)
T ss_pred HHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999999999998879999988421 1 1 2 4899999999999997 5678999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHhcC
Q 012513 429 LKDAAANALSPDGSSTKSLAQVAQRWKNP 457 (462)
Q Consensus 429 l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 457 (462)
|++.+++++++||||++++++|++++++-
T Consensus 459 lk~~a~~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 459 LGVMARKAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999753
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=9.9e-62 Score=490.33 Aligned_cols=422 Identities=30% Similarity=0.533 Sum_probs=307.8
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhc-CC---CCeeEEeCCCCCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLES-LP---TSISTIFLPPVSLDDLP 86 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~-~~---~~i~~~~l~~~~~~~~~ 86 (462)
++||+++|+|++||++|++.||++|++| ||+|||++++.+.. .+. .....+.. .+ ..+.+..+|... ..++
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~~--~i~-~~~a~~~~~~~~~~~~~~~~~~p~~~-~glP 79 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNAK--IFE-KPIEAFKNLNPGLEIDIQIFNFPCVE-LGLP 79 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCchh--hhh-hhhhhhcccCCCCcceEEEeeCCCCc-CCCC
Confidence 5799999999999999999999999988 99999999997654 010 11111101 11 133444444211 1233
Q ss_pred CCCch-----------HHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccccc----------
Q 012513 87 DNVPI-----------ETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNCE---------- 145 (462)
Q Consensus 87 ~~~~~-----------~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~~---------- 145 (462)
.+.+. ...+...+....+.+.+.+++++++.++||||+|.++.|+..+|+++||+....
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 32111 112233333555667777787776668999999999999999999999922110
Q ss_pred -c----CC----CC---CCccCCCCCc---CCCCCCCCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHh
Q 012513 146 -Y----RD----MP---EPVQLPGCVP---VHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKAL 210 (462)
Q Consensus 146 -~----~~----~~---~~~~~p~~~p---~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l 210 (462)
+ .. .. .+..+|++++ +...+++. .+........+........+.+++++|+++++|..+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~ 237 (482)
T PLN03007 160 SYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQIND--ADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFY 237 (482)
T ss_pred HHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCC--CCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHH
Confidence 0 00 00 0112455432 11112221 1111111222223334556778999999999999988887
Q ss_pred hcccCCCCCCCeEeeccCcCCCCC-------C---CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHH
Q 012513 211 MEGESSFNPPPVYPVGPLIQTGST-------N---ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLE 280 (462)
Q Consensus 211 ~~~~~~~~~p~v~~vGpl~~~~~~-------~---~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~ 280 (462)
.+.. .+.+++|||+...... . ...+ ++|.+||++.+++++|||||||+...+.+++.+++.+|+
T Consensus 238 ~~~~----~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~--~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~ 311 (482)
T PLN03007 238 KSFV----AKRAWHIGPLSLYNRGFEEKAERGKKANIDE--QECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLE 311 (482)
T ss_pred Hhcc----CCCEEEEccccccccccccccccCCccccch--hHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHH
Confidence 6531 1369999997643211 0 0112 678999999988999999999998888999999999999
Q ss_pred hCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHH
Q 012513 281 MSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILES 360 (462)
Q Consensus 281 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~ea 360 (462)
.++++|||+++.+.. ..+....+|++|.+|.+++|+++.+|+||.+||+|++|++|||||||||++||
T Consensus 312 ~~~~~flw~~~~~~~------------~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea 379 (482)
T PLN03007 312 GSGQNFIWVVRKNEN------------QGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEG 379 (482)
T ss_pred HCCCCEEEEEecCCc------------ccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHH
Confidence 999999999986421 00112358999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeecccccchhhhhHHhhcccceeEEeeec-----CCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 012513 361 IVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN-----ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAAN 435 (462)
Q Consensus 361 l~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~-----~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 435 (462)
+++|||||++|+++||+.||+++++.+++|+.+... +.+.+++++|+++|+++|.+++|++||+||+++++.+++
T Consensus 380 l~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~ 459 (482)
T PLN03007 380 VAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKA 459 (482)
T ss_pred HHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987656666665311 122489999999999999998899999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHhcC
Q 012513 436 ALSPDGSSTKSLAQVAQRWKNP 457 (462)
Q Consensus 436 ~~~~~g~~~~~~~~~~~~l~~~ 457 (462)
++++||||++++++|+++++++
T Consensus 460 a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 460 AVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HHhCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999865
No 16
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-61 Score=481.57 Aligned_cols=407 Identities=25% Similarity=0.427 Sum_probs=303.6
Q ss_pred CCCCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCC
Q 012513 8 QIPRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPD 87 (462)
Q Consensus 8 ~~~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 87 (462)
|..+.||+++|+|++||++||++||+.|+++ ||.|||++++.+.. ......... .++.++.+|+...++.+
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~------~~~~~~~~~-~~i~~v~lp~g~~~~~~- 73 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIHR------RISATLDPK-LGITFMSISDGQDDDPP- 73 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchhh------hhhhccCCC-CCEEEEECCCCCCCCcc-
Confidence 4456799999999999999999999999987 99999999986553 111111111 25888888753211111
Q ss_pred CCchHHHHHHHHH-HHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccc-----------cc--c-------
Q 012513 88 NVPIETRIILTLV-RSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFN-----------CE--Y------- 146 (462)
Q Consensus 88 ~~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~-----------~~--~------- 146 (462)
.+ ...+...+. ...+.+.++++++....+++|||+|.++.|+..+|+++||+.. +. +
T Consensus 74 -~~-~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~ 151 (448)
T PLN02562 74 -RD-FFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTG 151 (448)
T ss_pred -cc-HHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcc
Confidence 11 222222332 3445555566554222245899999999999999999999111 00 0
Q ss_pred --CCCC-----CCc-cCCCCCcCCCCCCCCchhhh--chHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhc-ccC
Q 012513 147 --RDMP-----EPV-QLPGCVPVHGRDFIEPVQQR--KNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALME-GES 215 (462)
Q Consensus 147 --~~~~-----~~~-~~p~~~p~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~-~~~ 215 (462)
.... .+. .+|++++++..+++..+... ....+..+.+..+...+.+++++|||++||..+...+.. .++
T Consensus 152 ~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 231 (448)
T PLN02562 152 LISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNN 231 (448)
T ss_pred ccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhcc
Confidence 0000 011 35666556666666543221 112244555556667778899999999999988776653 223
Q ss_pred CCCCCCeEeeccCcCCCCC----C--CCCCCcchhhcccCCCCCCeEEEEEeCCCC-CCCHHHHHHHHHHHHhCCCceEE
Q 012513 216 SFNPPPVYPVGPLIQTGST----N--ETNKRSPACLKWLDEQPSESVLFVCFGSGG-TLSQEQLNELALGLEMSGQRFLW 288 (462)
Q Consensus 216 ~~~~p~v~~vGpl~~~~~~----~--~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~-~~~~~~~~~i~~al~~~~~~~i~ 288 (462)
+ ..|+++.|||++..... . .+.+ .+|.+||++++++++|||||||+. .++.+++++++.+|+.++++|||
T Consensus 232 ~-~~~~v~~iGpl~~~~~~~~~~~~~~~~~--~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW 308 (448)
T PLN02562 232 G-QNPQILQIGPLHNQEATTITKPSFWEED--MSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIW 308 (448)
T ss_pred c-cCCCEEEecCcccccccccCCCccccch--HHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEE
Confidence 2 23689999999764321 1 1122 568899999988899999999975 67899999999999999999999
Q ss_pred EEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCcee
Q 012513 289 VAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPII 368 (462)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v 368 (462)
+++.+.. +.+|++|.++.++++ ++.+|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 309 ~~~~~~~-----------------~~l~~~~~~~~~~~~-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l 370 (448)
T PLN02562 309 VLNPVWR-----------------EGLPPGYVERVSKQG-KVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLL 370 (448)
T ss_pred EEcCCch-----------------hhCCHHHHHHhccCE-EEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEE
Confidence 9975321 247888888887655 4559999999999999999999999999999999999999
Q ss_pred ecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 012513 369 AWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLA 448 (462)
Q Consensus 369 ~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~ 448 (462)
++|+++||+.||+++++.+|+|+.+. + +++++|+++|+++|.| ++||+||+++++.++++ ++||||+++++
T Consensus 371 ~~P~~~DQ~~na~~~~~~~g~g~~~~--~---~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~ 441 (448)
T PLN02562 371 CYPVAGDQFVNCAYIVDVWKIGVRIS--G---FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFT 441 (448)
T ss_pred eCCcccchHHHHHHHHHHhCceeEeC--C---CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHH
Confidence 99999999999999987579998873 3 8999999999999988 49999999999999887 66899999999
Q ss_pred HHHHHHh
Q 012513 449 QVAQRWK 455 (462)
Q Consensus 449 ~~~~~l~ 455 (462)
+|+++++
T Consensus 442 ~~v~~~~ 448 (448)
T PLN02562 442 TLKDELK 448 (448)
T ss_pred HHHHHhC
Confidence 9999885
No 17
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.3e-61 Score=478.81 Aligned_cols=417 Identities=26% Similarity=0.404 Sum_probs=305.3
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcC--CCCeeEEeCCCCCCCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESL--PTSISTIFLPPVSLDDLPDN 88 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~~~~~~~ 88 (462)
+.||+++|+|++||++||+.||+.|++++|+.|||++++.+.. +...... .+++.++.+++ .++.+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--------~~~~~~~~~~~~i~~~~i~d----glp~g 70 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--------RSMIPNHNNVENLSFLTFSD----GFDDG 70 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--------hhhhccCCCCCCEEEEEcCC----CCCCc
Confidence 3599999999999999999999999853499999999984321 1111111 12588888863 23322
Q ss_pred C-----chHHHHHHHHHHHHHHHHHHHHHHhcc-CCccEEEeCCCcchHHHHHHHcCCcccc-----------c--c-CC
Q 012513 89 V-----PIETRIILTLVRSLSSLRDALKVLTES-TRLVALVVDCFGSAAFDVANELDVKFNC-----------E--Y-RD 148 (462)
Q Consensus 89 ~-----~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~D~vI~D~~~~~~~~vA~~lgI~~~~-----------~--~-~~ 148 (462)
. .....+........+.+.+.++++... .+++|||+|.+++|+..+|+++||+... . + ..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 71 VISNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred cccccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 1 111223333444556666777665322 3459999999999999999999992111 1 1 11
Q ss_pred CCCCccCCCCCcCCCCCCCCchhhh-chH-HHHHHHHHHHhhc--cccEEEEcchhhhcchHHHHhhcccCCCCCCCeEe
Q 012513 149 MPEPVQLPGCVPVHGRDFIEPVQQR-KNK-AYRFLLSFRKQYH--LAAGIMVNSFMELETGPFKALMEGESSFNPPPVYP 224 (462)
Q Consensus 149 ~~~~~~~p~~~p~~~~~~~~~~~~r-~~~-~~~~~~~~~~~~~--~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~ 224 (462)
......+|+++++..++++..+... ... ....+.+...... ..+++++|||++||..+...+.. ..++.
T Consensus 151 ~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-------~~v~~ 223 (455)
T PLN02152 151 NNSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-------IEMVA 223 (455)
T ss_pred CCCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-------CCEEE
Confidence 1122347887767677777655321 111 1233333333332 24699999999999999888754 25999
Q ss_pred eccCcCCC----CC--C----CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCc
Q 012513 225 VGPLIQTG----ST--N----ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPH 294 (462)
Q Consensus 225 vGpl~~~~----~~--~----~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~ 294 (462)
|||+.... .. . ...+ .+|.+||++++++++|||||||+..++.+++++++.+|+.++++|||+++.+.
T Consensus 224 VGPL~~~~~~~~~~~~~~~~~~~~~--~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~ 301 (455)
T PLN02152 224 VGPLLPAEIFTGSESGKDLSVRDQS--SSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKL 301 (455)
T ss_pred EcccCccccccccccCccccccccc--hHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 99997532 10 0 0112 47999999998889999999999999999999999999999999999998632
Q ss_pred ccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeeccccc
Q 012513 295 EEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS 374 (462)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~ 374 (462)
... +...........+|++|.++.++++++ .+|+||.+||+|++||+|||||||||++||+++|||||++|+++
T Consensus 302 ~~~-----~~~~~~~~~~~~~~~~f~e~~~~~g~v-~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 375 (455)
T PLN02152 302 NRE-----AKIEGEEETEIEKIAGFRHELEEVGMI-VSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWS 375 (455)
T ss_pred ccc-----cccccccccccccchhHHHhccCCeEE-EeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 100 000000000112478898888777655 59999999999999999999999999999999999999999999
Q ss_pred chhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 012513 375 EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRW 454 (462)
Q Consensus 375 DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 454 (462)
||+.||+++++++|+|+.+....++.+++++|+++|+++|++ ++..||+||+++++.+++++++||||++++++|++++
T Consensus 376 DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 376 DQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred cchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999986788888764333457999999999999974 4668999999999999999999999999999999987
Q ss_pred h
Q 012513 455 K 455 (462)
Q Consensus 455 ~ 455 (462)
.
T Consensus 455 ~ 455 (455)
T PLN02152 455 C 455 (455)
T ss_pred C
Confidence 3
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=9.1e-62 Score=481.18 Aligned_cols=418 Identities=35% Similarity=0.662 Sum_probs=302.5
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCC--CEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCC-CCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHN--FLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSL-DDLPD 87 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~G--H~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~-~~~~~ 87 (462)
+.||+++|+|++||++||+.||+.|+++ | +.||+...........+........... +++.++.+|+... .....
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTATYISSVSSSF-PSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhhhhhccccCCC-CCeEEEEcCCCCCCCCccc
Confidence 4699999999999999999999999887 8 5677654332211000000000111111 2588888875431 11111
Q ss_pred CCchH-HHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccc-------------cccC--C--C
Q 012513 88 NVPIE-TRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFN-------------CEYR--D--M 149 (462)
Q Consensus 88 ~~~~~-~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~-------------~~~~--~--~ 149 (462)
..... ..+........+.+.+.++++....+++|||+|.++.|+..+|+++||+.. ..+. . .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 11111 223333344555566666665322346999999999999999999999111 0000 0 0
Q ss_pred -----C--CCccCCCCCcCCCCCCCCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCe
Q 012513 150 -----P--EPVQLPGCVPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPV 222 (462)
Q Consensus 150 -----~--~~~~~p~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v 222 (462)
. .++.+|+++++...+++..+..+....+..+......+.+.+++++|||++||..+...+.... ..+++
T Consensus 161 ~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~---~~~~v 237 (451)
T PLN03004 161 PGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL---CFRNI 237 (451)
T ss_pred cccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC---CCCCE
Confidence 0 1134677776777777765543332334444555566677889999999999999998886521 12479
Q ss_pred EeeccCcCCCCCC-CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccc
Q 012513 223 YPVGPLIQTGSTN-ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANAT 301 (462)
Q Consensus 223 ~~vGpl~~~~~~~-~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~ 301 (462)
+.|||++...... .....+.+|.+||++++++++|||||||+..++.+++++|+.+|+.++++|+|+++....
T Consensus 238 ~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~------ 311 (451)
T PLN03004 238 YPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE------ 311 (451)
T ss_pred EEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc------
Confidence 9999997432111 101101469999999988999999999999999999999999999999999999985311
Q ss_pred cccccCCCCCCC-CCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhh
Q 012513 302 YFSVQSMKDPLD-FLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNA 380 (462)
Q Consensus 302 ~~~~~~~~~~~~-~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a 380 (462)
......... .+|++|.+|++++|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||
T Consensus 312 ---~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na 388 (451)
T PLN03004 312 ---LEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNR 388 (451)
T ss_pred ---ccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhH
Confidence 000000112 3899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 012513 381 VLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTK 445 (462)
Q Consensus 381 ~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~ 445 (462)
+++++++|+|++++..+.+.+++++|+++|+++|.| ++||+||+++++..++|+++||||++
T Consensus 389 ~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 389 VMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999865899999975433458999999999999987 48999999999999999999999875
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.1e-61 Score=483.90 Aligned_cols=426 Identities=32% Similarity=0.568 Sum_probs=313.6
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCC--CEEEEEeCCCCCCCCCCC-ch-hhhhhhcC-CCCeeEEeCCCCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHN--FLVSIFIPTIDDGTGSFM-QP-QRQVLESL-PTSISTIFLPPVSLDDL 85 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~G--H~Vt~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~i~~~~l~~~~~~~~ 85 (462)
|+||+++|+|++||++||+.||+.|+.+ | ..|||++++.+.. ++. .. ........ .+++.+..+|+...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~--- 75 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSG--DDASSSAYIASLSASSEDRLRYEVISAGDQ--- 75 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccc--hhhhhhhhhhhcccCCCCCeEEEEcCCCCC---
Confidence 7899999999999999999999999987 8 8899999986543 000 00 00001111 22588888876532
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhcc-----CC-ccEEEeCCCcchHHHHHHHcCCcccc-------------cc
Q 012513 86 PDNVPIETRIILTLVRSLSSLRDALKVLTES-----TR-LVALVVDCFGSAAFDVANELDVKFNC-------------EY 146 (462)
Q Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-----~~-~D~vI~D~~~~~~~~vA~~lgI~~~~-------------~~ 146 (462)
+.. ... .+...+....+.+.+.+++++.. .+ ++|||+|.++.|+..+|+++||+... .+
T Consensus 76 ~~~-~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~ 153 (481)
T PLN02554 76 PTT-EDP-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHV 153 (481)
T ss_pred Ccc-cch-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhh
Confidence 111 111 33344455566667777766532 12 38999999999999999999991110 00
Q ss_pred ---------C--CCC---CCccCCCC-CcCCCCCCCCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhh
Q 012513 147 ---------R--DMP---EPVQLPGC-VPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALM 211 (462)
Q Consensus 147 ---------~--~~~---~~~~~p~~-~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~ 211 (462)
. ... .++.+|++ .|++..+++..+..+ ..+..+.+......+.+++++|+++++|..+..++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~ 231 (481)
T PLN02554 154 QMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFS 231 (481)
T ss_pred hhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 0 000 11236776 366666776554332 234445555666778889999999999999999988
Q ss_pred cccCCCCCCCeEeeccCcC-CCCCC---CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceE
Q 012513 212 EGESSFNPPPVYPVGPLIQ-TGSTN---ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFL 287 (462)
Q Consensus 212 ~~~~~~~~p~v~~vGpl~~-~~~~~---~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i 287 (462)
+... ..|++++|||++. ..... ...+ ++|.+||++++++++|||||||+...+.+++.+++.+|+.++++||
T Consensus 232 ~~~~--~~~~v~~vGpl~~~~~~~~~~~~~~~--~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~fl 307 (481)
T PLN02554 232 GSSG--DLPPVYPVGPVLHLENSGDDSKDEKQ--SEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFL 307 (481)
T ss_pred hccc--CCCCEEEeCCCccccccccccccccc--hHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeE
Confidence 6321 2258999999943 22211 1222 6899999999888999999999988999999999999999999999
Q ss_pred EEEeCCcccccccccccc-cCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCc
Q 012513 288 WVAKSPHEEAANATYFSV-QSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVP 366 (462)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP 366 (462)
|+++....+. ...+ +........+|++|.+|.++++++ .+|+||.+||.|++|++|||||||||++||+++|||
T Consensus 308 W~~~~~~~~~----~~~~~~~~~~~~~~lp~~~~~r~~~~g~v-~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP 382 (481)
T PLN02554 308 WSLRRASPNI----MKEPPGEFTNLEEILPEGFLDRTKDIGKV-IGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVP 382 (481)
T ss_pred EEEcCCcccc----cccccccccchhhhCChHHHHHhccCceE-EeeCCHHHHhCCcccCcccccCccchHHHHHHcCCC
Confidence 9998632100 0000 000001123689999998877755 499999999999999999999999999999999999
Q ss_pred eeecccccchhhhhHH-hhcccceeEEeeec--------CCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhc
Q 012513 367 IIAWPLYSEQKMNAVL-LTDDLKVSFRVKVN--------ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANAL 437 (462)
Q Consensus 367 ~v~~P~~~DQ~~~a~r-v~~~~g~G~~~~~~--------~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~ 437 (462)
||++|+++||+.||++ +++ +|+|+.+... +.+.+++++|+++|+++|.++ ++||+||+++++.+++++
T Consensus 383 ~l~~P~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~~~~av 459 (481)
T PLN02554 383 MAAWPLYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEKCHVAL 459 (481)
T ss_pred EEecCccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHh
Confidence 9999999999999955 667 9999998631 113589999999999999732 599999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCC
Q 012513 438 SPDGSSTKSLAQVAQRWKNPE 458 (462)
Q Consensus 438 ~~~g~~~~~~~~~~~~l~~~~ 458 (462)
++|||+++++++|++++++..
T Consensus 460 ~~gGss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 460 MDGGSSHTALKKFIQDVTKNI 480 (481)
T ss_pred cCCChHHHHHHHHHHHHHhhC
Confidence 999999999999999998763
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.4e-61 Score=481.19 Aligned_cols=414 Identities=30% Similarity=0.497 Sum_probs=303.4
Q ss_pred CCCCCCcEEEEEcCCCcCCHHHHHHHHHHHHhcC-CCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCC
Q 012513 6 SKQIPRAHVAMVPTPGMGHLIPLAQLAKRLVRQH-NFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDD 84 (462)
Q Consensus 6 ~~~~~~~~ill~~~p~~GHv~P~l~La~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 84 (462)
++..++.||+++|+|++||++||+.||++|++++ ||+|||++++.+.. ...... .+.++.|+.+++.....
T Consensus 5 ~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~------~i~~~~--~~~gi~fv~lp~~~p~~ 76 (459)
T PLN02448 5 SSPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLG------LIGSDP--KPDNIRFATIPNVIPSE 76 (459)
T ss_pred CCCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHh------HhhccC--CCCCEEEEECCCCCCCc
Confidence 3445678999999999999999999999998643 99999999987654 111111 12468999888522122
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCcccc-------------ccC----
Q 012513 85 LPDNVPIETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNC-------------EYR---- 147 (462)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~-------------~~~---- 147 (462)
.....+....+........+.+.+.++++. .++||||+|.+++|+..+|+++||+... .+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~ 154 (459)
T PLN02448 77 LVRAADFPGFLEAVMTKMEAPFEQLLDRLE--PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQ 154 (459)
T ss_pred cccccCHHHHHHHHHHHhHHHHHHHHHhcC--CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhh
Confidence 211222222222222234444455554431 4689999999999999999999992110 000
Q ss_pred ----CCC------CCc-cCCCCCcCCCCCCCCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCC
Q 012513 148 ----DMP------EPV-QLPGCVPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESS 216 (462)
Q Consensus 148 ----~~~------~~~-~~p~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~ 216 (462)
... ..+ .+|++.++...+++..+.+.....+..+........+..++++||+++||+.+..++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~-- 232 (459)
T PLN02448 155 NGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF-- 232 (459)
T ss_pred ccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc--
Confidence 000 001 2455555555555554432222224445555555667789999999999999888886631
Q ss_pred CCCCCeEeeccCcCCCCCC----C--CCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEE
Q 012513 217 FNPPPVYPVGPLIQTGSTN----E--TNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVA 290 (462)
Q Consensus 217 ~~~p~v~~vGpl~~~~~~~----~--~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~ 290 (462)
. ++++.|||+....... . ..+...++..||++.+++++|||||||+...+.+++++++.+|+.++++|||++
T Consensus 233 -~-~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~ 310 (459)
T PLN02448 233 -P-FPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVA 310 (459)
T ss_pred -C-CceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 2 3799999997532110 0 001003788999998888999999999988889999999999999999999987
Q ss_pred eCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeec
Q 012513 291 KSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW 370 (462)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~ 370 (462)
+... .++.++.++ ++++.+|+||.+||+|++|++|||||||||++||+++|||||++
T Consensus 311 ~~~~----------------------~~~~~~~~~-~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~ 367 (459)
T PLN02448 311 RGEA----------------------SRLKEICGD-MGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTF 367 (459)
T ss_pred cCch----------------------hhHhHhccC-CEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEec
Confidence 6421 123333333 45566999999999999999999999999999999999999999
Q ss_pred ccccchhhhhHHhhcccceeEEeeec--CCcccCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 012513 371 PLYSEQKMNAVLLTDDLKVSFRVKVN--ENGLVGREDIANYAKGLIQG--EEGKLLRKKMRALKDAAANALSPDGSSTKS 446 (462)
Q Consensus 371 P~~~DQ~~~a~rv~~~~g~G~~~~~~--~~~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~ 446 (462)
|+++||+.||+++++++|+|+.+... +.+.+++++|+++|+++|.+ ++|++||+||+++++.+++++++||||+++
T Consensus 368 P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~ 447 (459)
T PLN02448 368 PLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTN 447 (459)
T ss_pred cccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999999999867999988632 12357999999999999986 468999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 012513 447 LAQVAQRWKN 456 (462)
Q Consensus 447 ~~~~~~~l~~ 456 (462)
+++|++++++
T Consensus 448 l~~~v~~~~~ 457 (459)
T PLN02448 448 LDAFIRDISQ 457 (459)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.2e-60 Score=477.91 Aligned_cols=418 Identities=34% Similarity=0.631 Sum_probs=308.8
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCC---EEEEEeCCCCCCCCCCCchhhhhhhc---CCCCeeEEeCCCCCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNF---LVSIFIPTIDDGTGSFMQPQRQVLES---LPTSISTIFLPPVSLD 83 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH---~Vt~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~l~~~~~~ 83 (462)
++.||+++|+|++||++||+.||+.|+.+ |. .||+++++.... ......... ..++|.+..+|+...
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~~-----~~~~~~~~~~~~~~~~i~~~~lp~~~~- 74 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPFA-----PQADAFLKSLIASEPRIRLVTLPEVQD- 74 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCcc-----hhhhHHHhhcccCCCCeEEEECCCCCC-
Confidence 35699999999999999999999999887 83 566666543221 001111111 112589999886431
Q ss_pred CCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHhcc-----C-CccEEEeCCCcchHHHHHHHcCCcccc--------
Q 012513 84 DLPDNV-----PIETRIILTLVRSLSSLRDALKVLTES-----T-RLVALVVDCFGSAAFDVANELDVKFNC-------- 144 (462)
Q Consensus 84 ~~~~~~-----~~~~~l~~~~~~~~~~~~~~l~~~~~~-----~-~~D~vI~D~~~~~~~~vA~~lgI~~~~-------- 144 (462)
+.+. .....+........+.+.+.++++..+ . +++|||+|.+++|+..+|+++||+...
T Consensus 75 --p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~ 152 (475)
T PLN02167 75 --PPPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGF 152 (475)
T ss_pred --CccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHH
Confidence 1111 111233444455566677777766432 1 359999999999999999999991110
Q ss_pred ---c--c---C-CCC---------CCccCCCC-CcCCCCCCCCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcch
Q 012513 145 ---E--Y---R-DMP---------EPVQLPGC-VPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETG 205 (462)
Q Consensus 145 ---~--~---~-~~~---------~~~~~p~~-~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~ 205 (462)
. + . ... .+..+||+ .+++..+++..++.+ ..+..+....+...+++++++|||+++|+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (475)
T PLN02167 153 LGMMKYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPN 230 (475)
T ss_pred HHHHHHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHH
Confidence 0 0 0 000 11236776 345666666544322 123344455566677889999999999999
Q ss_pred HHHHhhcccCCCCCCCeEeeccCcCCCCC---C--CCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHH
Q 012513 206 PFKALMEGESSFNPPPVYPVGPLIQTGST---N--ETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLE 280 (462)
Q Consensus 206 ~~~~l~~~~~~~~~p~v~~vGpl~~~~~~---~--~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~ 280 (462)
+..++..... ..|++++|||++..... . .... .+|.+||++++++++|||||||+...+.+++.+++.+|+
T Consensus 231 ~~~~l~~~~~--~~p~v~~vGpl~~~~~~~~~~~~~~~~--~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~ 306 (475)
T PLN02167 231 AFDYFSRLPE--NYPPVYPVGPILSLKDRTSPNLDSSDR--DRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALE 306 (475)
T ss_pred HHHHHHhhcc--cCCeeEEeccccccccccCCCCCcchh--HHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHH
Confidence 9888865211 12689999999763221 1 1112 579999999988899999999998899999999999999
Q ss_pred hCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHH
Q 012513 281 MSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILES 360 (462)
Q Consensus 281 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~ea 360 (462)
.++++|||+++.+.. ........+|++|.+|++++++++ +|+||.+||+|++|++|||||||||++||
T Consensus 307 ~~~~~flw~~~~~~~-----------~~~~~~~~lp~~~~er~~~rg~v~-~w~PQ~~iL~h~~vg~fvtH~G~nS~~Ea 374 (475)
T PLN02167 307 LVGCRFLWSIRTNPA-----------EYASPYEPLPEGFMDRVMGRGLVC-GWAPQVEILAHKAIGGFVSHCGWNSVLES 374 (475)
T ss_pred hCCCcEEEEEecCcc-----------cccchhhhCChHHHHHhccCeeee-ccCCHHHHhcCcccCeEEeeCCcccHHHH
Confidence 999999999985321 000112358999999998888655 99999999999999999999999999999
Q ss_pred HHhCCceeecccccchhhhhHH-hhcccceeEEeeec---C-CcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 012513 361 IVHGVPIIAWPLYSEQKMNAVL-LTDDLKVSFRVKVN---E-NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAAN 435 (462)
Q Consensus 361 l~~GvP~v~~P~~~DQ~~~a~r-v~~~~g~G~~~~~~---~-~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 435 (462)
+++|||||++|+++||+.||++ ++. +|+|+.+... + .+.+++++|+++|+++|.++ +.||+||+++++.+++
T Consensus 375 l~~GvP~l~~P~~~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~ 451 (475)
T PLN02167 375 LWFGVPIATWPMYAEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARK 451 (475)
T ss_pred HHcCCCEEeccccccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 556 9999998643 1 12479999999999999864 4899999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHhcC
Q 012513 436 ALSPDGSSTKSLAQVAQRWKNP 457 (462)
Q Consensus 436 ~~~~~g~~~~~~~~~~~~l~~~ 457 (462)
++++||||++++++|+++|+..
T Consensus 452 av~~gGsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 452 AVMDGGSSFVAVKRFIDDLLGD 473 (475)
T ss_pred HHhCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999764
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.4e-47 Score=386.15 Aligned_cols=388 Identities=19% Similarity=0.215 Sum_probs=263.4
Q ss_pred EEEEE-cCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCC--CC-CC-C
Q 012513 13 HVAMV-PTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSL--DD-LP-D 87 (462)
Q Consensus 13 ~ill~-~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~--~~-~~-~ 87 (462)
+|+.+ |.++.+|+.-+.+|+++|++| ||+||++++..... .... ...++..+.++.... .+ .. .
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~~----~~~~------~~~~~~~i~~~~~~~~~~~~~~~~ 90 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRVY----YASH------LCGNITEIDASLSVEYFKKLVKSS 90 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEecccccc----cccC------CCCCEEEEEcCCChHHHHHHHhhh
Confidence 47655 889999999999999999998 99999998863211 0000 112344444321100 00 00 0
Q ss_pred C-C-------chHHH---H-HHHHHHHHHHH-HHHHHHHhc--cCCccEEEeCCCcchHHHHHHHc-CCcc----ccccC
Q 012513 88 N-V-------PIETR---I-ILTLVRSLSSL-RDALKVLTE--STRLVALVVDCFGSAAFDVANEL-DVKF----NCEYR 147 (462)
Q Consensus 88 ~-~-------~~~~~---l-~~~~~~~~~~~-~~~l~~~~~--~~~~D~vI~D~~~~~~~~vA~~l-gI~~----~~~~~ 147 (462)
. + ..... . ......+...+ ...+.++++ +.++|+||+|.+..|+..+|+++ +++. ++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 91 AVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 0 0 00000 0 01111111111 222334444 56899999999999999999999 8821 11111
Q ss_pred -----CCCCCccCCCCCcCCCCCCCCch--hhhchHHHHHHHHH---------HHhh-ccccEEEEcchhhhcchHHHHh
Q 012513 148 -----DMPEPVQLPGCVPVHGRDFIEPV--QQRKNKAYRFLLSF---------RKQY-HLAAGIMVNSFMELETGPFKAL 210 (462)
Q Consensus 148 -----~~~~~~~~p~~~p~~~~~~~~~~--~~r~~~~~~~~~~~---------~~~~-~~~~~~l~~s~~~l~~~~~~~l 210 (462)
.....+..|++.|...+...+.| ++|..|++...... ...+ .+..+...+++.++.......+
T Consensus 171 ~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~l 250 (507)
T PHA03392 171 AENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLF 250 (507)
T ss_pred hhHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEE
Confidence 11213334577777777777776 78887764322111 1111 1111111245566666554444
Q ss_pred hcc------cCCCCCCCeEeeccCcCCCCCCCCCCCcchhhcccCCCCCCeEEEEEeCCCC---CCCHHHHHHHHHHHHh
Q 012513 211 MEG------ESSFNPPPVYPVGPLIQTGSTNETNKRSPACLKWLDEQPSESVLFVCFGSGG---TLSQEQLNELALGLEM 281 (462)
Q Consensus 211 ~~~------~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~---~~~~~~~~~i~~al~~ 281 (462)
.+. ++++ +|++++|||++.......+.+ +++.+|+++.+ +++|||||||+. ..+.+.++.+++|+++
T Consensus 251 vns~~~~d~~rp~-~p~v~~vGgi~~~~~~~~~l~--~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~ 326 (507)
T PHA03392 251 VNVHPVFDNNRPV-PPSVQYLGGLHLHKKPPQPLD--DYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKK 326 (507)
T ss_pred EecCccccCCCCC-CCCeeeecccccCCCCCCCCC--HHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHHHHHh
Confidence 433 3332 369999999987542223344 88999999864 579999999974 3578889999999999
Q ss_pred CCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHH
Q 012513 282 SGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESI 361 (462)
Q Consensus 282 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal 361 (462)
++++|||+++.... . ..+|+ |+.+.+|+||.+||+|+.|++||||||+||++||+
T Consensus 327 l~~~viw~~~~~~~---------------~-~~~p~---------Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal 381 (507)
T PHA03392 327 LPYNVLWKYDGEVE---------------A-INLPA---------NVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAI 381 (507)
T ss_pred CCCeEEEEECCCcC---------------c-ccCCC---------ceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHH
Confidence 99999999985322 0 13454 88899999999999999999999999999999999
Q ss_pred HhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCC
Q 012513 362 VHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDG 441 (462)
Q Consensus 362 ~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g 441 (462)
++|||||++|+++||+.||+|+++ +|+|+.++..+ ++.++|.++|+++++| ++||+||+++++.+++. ...
T Consensus 382 ~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~---~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~~--p~~ 452 (507)
T PHA03392 382 DALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDTVT---VSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRHQ--PMT 452 (507)
T ss_pred HcCCCEEECCCCccHHHHHHHHHH-cCcEEEeccCC---cCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhC--CCC
Confidence 999999999999999999999999 99999999876 9999999999999998 49999999999999962 223
Q ss_pred ChHHHHHH
Q 012513 442 SSTKSLAQ 449 (462)
Q Consensus 442 ~~~~~~~~ 449 (462)
+.++++.-
T Consensus 453 ~~~~av~~ 460 (507)
T PHA03392 453 PLHKAIWY 460 (507)
T ss_pred HHHHHHHH
Confidence 44454443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.3e-48 Score=401.49 Aligned_cols=374 Identities=22% Similarity=0.342 Sum_probs=223.7
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCC-CCCCCCCCch
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVS-LDDLPDNVPI 91 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-~~~~~~~~~~ 91 (462)
+|+++|. ++||+.++..|+++|++| ||+||++++..... .-...+..+++..++... ..+.......
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAER-GHNVTVLTPSPSSS----------LNPSKPSNIRFETYPDPYPEEEFEEIFPE 69 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHHHHT----------------S-CCEEEE-----TT------TT
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhc-CCceEEEEeecccc----------cccccccceeeEEEcCCcchHHHhhhhHH
Confidence 5788875 779999999999999999 99999999753111 000112234444433221 1111111111
Q ss_pred -HHH----------HHHHHHHH---HHHHHHHHHHH---------hccCCccEEEeCCCcchHHHHHHHcCCccc-----
Q 012513 92 -ETR----------IILTLVRS---LSSLRDALKVL---------TESTRLVALVVDCFGSAAFDVANELDVKFN----- 143 (462)
Q Consensus 92 -~~~----------l~~~~~~~---~~~~~~~l~~~---------~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~----- 143 (462)
... ....+... ........+.+ +++.++|++|+|.+.+|+..+|+.++|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 70 FISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 110 11111110 01111111111 123479999999999999999999999211
Q ss_pred ccc---CCCC-CCccCCCCCcCCCCCCCCch--hhhchHHHHHHHHHH--Hhhcc----ccEEEE---cchhhhcchHHH
Q 012513 144 CEY---RDMP-EPVQLPGCVPVHGRDFIEPV--QQRKNKAYRFLLSFR--KQYHL----AAGIMV---NSFMELETGPFK 208 (462)
Q Consensus 144 ~~~---~~~~-~~~~~p~~~p~~~~~~~~~~--~~r~~~~~~~~~~~~--~~~~~----~~~~l~---~s~~~l~~~~~~ 208 (462)
... .... ..+..|++.|...+.+++.| ++|..+.+..+.... ..... ...-.. .+..++....+.
T Consensus 150 ~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (500)
T PF00201_consen 150 TPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASL 229 (500)
T ss_dssp CSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHH
T ss_pred cccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHH
Confidence 111 1111 22334678887777777776 677766554332211 11111 111111 122233333333
Q ss_pred HhhcccCCCC-----CCCeEeeccCcCCCCCCCCCCCcchhhcccCCCCCCeEEEEEeCCCCC-CCHHHHHHHHHHHHhC
Q 012513 209 ALMEGESSFN-----PPPVYPVGPLIQTGSTNETNKRSPACLKWLDEQPSESVLFVCFGSGGT-LSQEQLNELALGLEMS 282 (462)
Q Consensus 209 ~l~~~~~~~~-----~p~v~~vGpl~~~~~~~~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~-~~~~~~~~i~~al~~~ 282 (462)
++.+....++ .|++.++|+++...+.+ .+ ++++.|+++..++++|||||||+.. ++.+.++++++|++++
T Consensus 230 ~l~ns~~~ld~prp~~p~v~~vGgl~~~~~~~--l~--~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~ 305 (500)
T PF00201_consen 230 VLINSHPSLDFPRPLLPNVVEVGGLHIKPAKP--LP--EELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENL 305 (500)
T ss_dssp CCSSTEEE----HHHHCTSTTGCGC-S----T--CH--HHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCS
T ss_pred HhhhccccCcCCcchhhcccccCccccccccc--cc--cccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhC
Confidence 3333222222 26899999998765543 33 8899999985567899999999854 4444588899999999
Q ss_pred CCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHH
Q 012513 283 GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIV 362 (462)
Q Consensus 283 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~ 362 (462)
+++|||++..... ..+|+ |+++.+|+||.+||.|++|++||||||+||++||++
T Consensus 306 ~~~~iW~~~~~~~-----------------~~l~~---------n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~ 359 (500)
T PF00201_consen 306 PQRFIWKYEGEPP-----------------ENLPK---------NVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALY 359 (500)
T ss_dssp TTEEEEEETCSHG-----------------CHHHT---------TEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHH
T ss_pred CCccccccccccc-----------------ccccc---------eEEEeccccchhhhhcccceeeeeccccchhhhhhh
Confidence 9999999986322 22333 788889999999999999999999999999999999
Q ss_pred hCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 012513 363 HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAAN 435 (462)
Q Consensus 363 ~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 435 (462)
+|||||++|+++||+.||+++++ .|+|+.++..+ ++.++|.++|+++++|+ +|++||+++++.++.
T Consensus 360 ~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~~~---~~~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 360 HGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDKND---LTEEELRAAIREVLENP---SYKENAKRLSSLFRD 425 (500)
T ss_dssp CT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGGGC----SHHHHHHHHHHHHHSH---HHHHHHHHHHHTTT-
T ss_pred ccCCccCCCCcccCCccceEEEE-EeeEEEEEecC---CcHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhc
Confidence 99999999999999999999999 99999999887 99999999999999994 999999999999885
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.9e-41 Score=337.81 Aligned_cols=375 Identities=17% Similarity=0.199 Sum_probs=235.8
Q ss_pred EcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCC-CCCCC-C-chHH
Q 012513 17 VPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLD-DLPDN-V-PIET 93 (462)
Q Consensus 17 ~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~-~~~~~-~-~~~~ 93 (462)
+.+|++||++|++.||++|+++ ||+|+|++++.+.. ..+. .|+.+..++..... +.... . ....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~~~~~------~v~~------~G~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVAR-GHRVTYATTEEFAE------RVEA------AGAEFVLYGSALPPPDNPPENTEEEPI 67 (392)
T ss_pred CCCCccccccccHHHHHHHHhC-CCeEEEEeCHHHHH------HHHH------cCCEEEecCCcCccccccccccCcchH
Confidence 3689999999999999999988 99999999986554 2222 25677666542211 11111 0 1111
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccccccCCCCCCccCCCC-CcCCCCCCCCchh
Q 012513 94 RIILTL-VRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNCEYRDMPEPVQLPGC-VPVHGRDFIEPVQ 171 (462)
Q Consensus 94 ~l~~~~-~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~~~~~~~~~~~~p~~-~p~~~~~~~~~~~ 171 (462)
.+...+ ......+ +.+.+++++.+||+||+|.+++++..+|+++||+.....+.......+|.. +|.....+. ..
T Consensus 68 ~~~~~~~~~~~~~~-~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 144 (392)
T TIGR01426 68 DIIEKLLDEAEDVL-PQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEEFEEMVSPAGEGSAE--EG 144 (392)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccccccccccccchhhhh--hh
Confidence 122222 2222222 233444456799999999999999999999999433222111111011111 111100000 00
Q ss_pred hhchHHHHHHHHHHHhhccccEEEEcchhhh--------cchHHHHhhcccCCCCCCCeEeeccCcCCCCCCCCCCCcch
Q 012513 172 QRKNKAYRFLLSFRKQYHLAAGIMVNSFMEL--------ETGPFKALMEGESSFNPPPVYPVGPLIQTGSTNETNKRSPA 243 (462)
Q Consensus 172 ~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l--------~~~~~~~l~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~ 243 (462)
......+..+....+.+++..|+-.+....+ ....+..+......+ +++++++||+..... +
T Consensus 145 ~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~Gp~~~~~~---------~ 214 (392)
T TIGR01426 145 AIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETF-DDSFTFVGPCIGDRK---------E 214 (392)
T ss_pred ccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCcccc-CCCeEEECCCCCCcc---------c
Confidence 0000001111122222211111100011110 001111221111111 257999999865432 1
Q ss_pred hhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhh
Q 012513 244 CLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT 323 (462)
Q Consensus 244 ~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 323 (462)
...|......+++|||||||+.......+.+++++++..+.+++|..+.... ......++
T Consensus 215 ~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~-------------~~~~~~~~------- 274 (392)
T TIGR01426 215 DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD-------------PADLGELP------- 274 (392)
T ss_pred cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC-------------hhHhccCC-------
Confidence 2247766566789999999986666778889999999999999998865321 00111223
Q ss_pred CCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCH
Q 012513 324 KGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGR 403 (462)
Q Consensus 324 ~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~ 403 (462)
+|+.+.+|+||.++|++++ ++|||||+||++||+++|+|+|++|...||+.|+.++++ +|+|+.+...+ +++
T Consensus 275 --~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~~~---~~~ 346 (392)
T TIGR01426 275 --PNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPPEE---VTA 346 (392)
T ss_pred --CCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEecccc---CCH
Confidence 3788889999999999999 999999999999999999999999999999999999999 99999988766 899
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 012513 404 EDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQ 452 (462)
Q Consensus 404 ~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 452 (462)
++|.++|++++.|+ +|+++++++++.+++ .++...+.+.+.+
T Consensus 347 ~~l~~ai~~~l~~~---~~~~~~~~l~~~~~~----~~~~~~aa~~i~~ 388 (392)
T TIGR01426 347 EKLREAVLAVLSDP---RYAERLRKMRAEIRE----AGGARRAADEIEG 388 (392)
T ss_pred HHHHHHHHHHhcCH---HHHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 99999999999984 899999999999996 3344444444443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.5e-41 Score=339.90 Aligned_cols=368 Identities=16% Similarity=0.093 Sum_probs=229.3
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCC----CCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDD----LPD 87 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~----~~~ 87 (462)
|||+|+++|++||++|++.||++|++| ||+|+|++++.+.. ..+ ..|++|..++...... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~~~~------~v~------~~G~~~~~~~~~~~~~~~~~~~~ 67 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPEFAD------LVE------AAGLEFVPVGGDPDELLASPERN 67 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHhHHH------HHH------HcCCceeeCCCCHHHHHhhhhhc
Confidence 799999999999999999999999988 99999999985543 121 1367777665431100 000
Q ss_pred ------CCchHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccccccCCCCCCccCCCCCcC
Q 012513 88 ------NVPIETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNCEYRDMPEPVQLPGCVPV 161 (462)
Q Consensus 88 ------~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~~~~~~~~~~~~p~~~p~ 161 (462)
...........+....+.+.+.+.+.+++.++|+||+|.+++++..+|+++||+..........+ ++..+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~---~~~~~~ 144 (401)
T cd03784 68 AGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTP---TSAFPP 144 (401)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCc---cccCCC
Confidence 00111112222222222222233333455799999999999988899999999433222211111 111000
Q ss_pred CCCCCCCchhhh--chHHHHHHHHHHHhhccccEEEEcc-----hhhhcchHHHHhhcccCCCCCCCeEeec-cCcCCCC
Q 012513 162 HGRDFIEPVQQR--KNKAYRFLLSFRKQYHLAAGIMVNS-----FMELETGPFKALMEGESSFNPPPVYPVG-PLIQTGS 233 (462)
Q Consensus 162 ~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~s-----~~~l~~~~~~~l~~~~~~~~~p~v~~vG-pl~~~~~ 233 (462)
+........+.. ...............++..++-... .......++..+...... ..+...++| ++.....
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 223 (401)
T cd03784 145 PLGRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPD-WPRFDLVTGYGFRDVPY 223 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCCC-ccccCcEeCCCCCCCCC
Confidence 000000000000 0000111111111222212211000 000011111111111111 123566665 3332222
Q ss_pred CCCCCCCcchhhcccCCCCCCeEEEEEeCCCCCCC-HHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCC
Q 012513 234 TNETNKRSPACLKWLDEQPSESVLFVCFGSGGTLS-QEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPL 312 (462)
Q Consensus 234 ~~~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~-~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (462)
....+ .+++.|+++. +++|||||||+.... ...+..++++++..+.++||..+.... ..
T Consensus 224 -~~~~~--~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~---------------~~ 283 (401)
T cd03784 224 -NGPPP--PELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL---------------GA 283 (401)
T ss_pred -CCCCC--HHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc---------------cc
Confidence 22223 6788898764 469999999986544 456788999999999999999886432 00
Q ss_pred CCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEE
Q 012513 313 DFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFR 392 (462)
Q Consensus 313 ~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~ 392 (462)
..+| +|+.+.+|+||.++|++++ +||||||+||++||+++|||+|++|+..||+.||+++++ +|+|+.
T Consensus 284 ~~~~---------~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~-~G~g~~ 351 (401)
T cd03784 284 EDLP---------DNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE-LGAGPA 351 (401)
T ss_pred cCCC---------CceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH-CCCCCC
Confidence 1223 3888999999999999999 999999999999999999999999999999999999999 999999
Q ss_pred eeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 012513 393 VKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAAN 435 (462)
Q Consensus 393 ~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 435 (462)
+...+ +++++|.+++++++++ .++++++++++.+++
T Consensus 352 l~~~~---~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~~ 387 (401)
T cd03784 352 LDPRE---LTAERLAAALRRLLDP----PSRRRAAALLRRIRE 387 (401)
T ss_pred CCccc---CCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHh
Confidence 98775 8999999999999986 567778888877764
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.9e-39 Score=332.29 Aligned_cols=383 Identities=28% Similarity=0.431 Sum_probs=236.0
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeE---EeCCCCCC-CCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSIST---IFLPPVSL-DDLP 86 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~l~~~~~-~~~~ 86 (462)
..+++++++|++||++|+..+|+.|+++ ||+||++++...... .... .. ...+.. ...+.... ..++
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~~~~-----~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFNALK-----LSKS-SK--SKSIKKINPPPFEFLTIPDGLP 75 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeechhcc-----cCCc-cc--ceeeeeeecChHHhhhhhhhhc
Confidence 4688999999999999999999999998 999999998765440 0000 00 000000 00110000 1122
Q ss_pred CCCchH-----HHHHHHHHHHHHHHHHHHHHHhcc--CCccEEEeCCCcchHHHHHHHcC-CccccccC------CCCCC
Q 012513 87 DNVPIE-----TRIILTLVRSLSSLRDALKVLTES--TRLVALVVDCFGSAAFDVANELD-VKFNCEYR------DMPEP 152 (462)
Q Consensus 87 ~~~~~~-----~~l~~~~~~~~~~~~~~l~~~~~~--~~~D~vI~D~~~~~~~~vA~~lg-I~~~~~~~------~~~~~ 152 (462)
..+... .........+...+.+.+..+... ..+|++|+|.+..+...+|.... |....... ....+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~ 155 (496)
T KOG1192|consen 76 EGWEDDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP 155 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc
Confidence 222111 111222333334444444333222 23999999998666666776654 52111110 01111
Q ss_pred ccCCCCCcCCCCCCC-C--chhhhchHHHHHHHHH--------------HHhh--------ccccEEEEcc-hhhhcchH
Q 012513 153 VQLPGCVPVHGRDFI-E--PVQQRKNKAYRFLLSF--------------RKQY--------HLAAGIMVNS-FMELETGP 206 (462)
Q Consensus 153 ~~~p~~~p~~~~~~~-~--~~~~r~~~~~~~~~~~--------------~~~~--------~~~~~~l~~s-~~~l~~~~ 206 (462)
.. ..+.|...+... + .+.+|..+........ .... .....+..++ +..++...
T Consensus 156 ~~-~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~ 234 (496)
T KOG1192|consen 156 SP-LSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNP 234 (496)
T ss_pred Cc-ccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCc
Confidence 10 122332222111 1 1234433322111110 0000 0111223333 44444443
Q ss_pred HHHhhcccCCCCCCCeEeeccCcCCCCCCCCCCCcchhhcccCCCCCC--eEEEEEeCCCC---CCCHHHHHHHHHHHHh
Q 012513 207 FKALMEGESSFNPPPVYPVGPLIQTGSTNETNKRSPACLKWLDEQPSE--SVLFVCFGSGG---TLSQEQLNELALGLEM 281 (462)
Q Consensus 207 ~~~l~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~wl~~~~~~--~~v~vs~Gs~~---~~~~~~~~~i~~al~~ 281 (462)
...+.+. + ..|++.+|||+......... ..+.+|++..+.. ++|||||||+. .++.++..+++.+++.
T Consensus 235 ~~~~~~~--~-~~~~v~~IG~l~~~~~~~~~----~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~ 307 (496)
T KOG1192|consen 235 LLDFEPR--P-LLPKVIPIGPLHVKDSKQKS----PLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALES 307 (496)
T ss_pred ccCCCCC--C-CCCCceEECcEEecCccccc----cccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHh
Confidence 3222121 1 24689999999887432221 2356777766654 89999999997 7999999999999999
Q ss_pred C-CCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhh-hccccccccccccCchhHHH
Q 012513 282 S-GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQV-LRHGSTGGFLSHCGWNSILE 359 (462)
Q Consensus 282 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~l-L~~~~~~~~I~HGG~~t~~e 359 (462)
+ ++.|+|++..... ..+++++..+ ...|++..+|+||.++ |+|+++++||||||||||+|
T Consensus 308 ~~~~~FiW~~~~~~~-----------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E 369 (496)
T KOG1192|consen 308 LQGVTFLWKYRPDDS-----------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLE 369 (496)
T ss_pred CCCceEEEEecCCcc-----------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHH
Confidence 9 8889999987532 0122332222 2347777799999999 59999999999999999999
Q ss_pred HHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 012513 360 SIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAAN 435 (462)
Q Consensus 360 al~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 435 (462)
++++|||||++|+++||+.||+++++ .|.|..+...+ .+.+.+.+++.+++.++ +|+++++++++..++
T Consensus 370 ~~~~GvP~v~~Plf~DQ~~Na~~i~~-~g~~~v~~~~~---~~~~~~~~~~~~il~~~---~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 370 SIYSGVPMVCVPLFGDQPLNARLLVR-HGGGGVLDKRD---LVSEELLEAIKEILENE---EYKEAAKRLSEILRD 438 (496)
T ss_pred HHhcCCceecCCccccchhHHHHHHh-CCCEEEEehhh---cCcHHHHHHHHHHHcCh---HHHHHHHHHHHHHHc
Confidence 99999999999999999999999999 55555555444 56555999999999985 999999999998874
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1e-38 Score=314.96 Aligned_cols=378 Identities=18% Similarity=0.198 Sum_probs=229.0
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCC-CCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSL-DDLPDNV 89 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~-~~~~~~~ 89 (462)
+|||+++..|++||++|.++||++|.++ ||+|+|++.+.+.+ ..+.. ++.|..++.... .....+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~~~~------~ve~a------g~~f~~~~~~~~~~~~~~~~ 67 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGKFKE------FVEAA------GLAFVAYPIRDSELATEDGK 67 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCHHHHH------HHHHh------CcceeeccccCChhhhhhhh
Confidence 5899999999999999999999999988 99999999986665 23222 344444333210 0000000
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccccc----cCCCCC-CccCCC-----C
Q 012513 90 -PIETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNCE----YRDMPE-PVQLPG-----C 158 (462)
Q Consensus 90 -~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~~----~~~~~~-~~~~p~-----~ 158 (462)
.....+............+.++ ++.+..+|+++.|.....+ .+++..+++.... +...+. ...+|. -
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (406)
T COG1819 68 FAGVKSFRRLLQQFKKLIRELLE-LLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGK 145 (406)
T ss_pred hhccchhHHHhhhhhhhhHHHHH-HHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccc
Confidence 0111111111111111222222 2334578988888766555 6677777721111 110000 000000 0
Q ss_pred CcCCCCCCCCchhhhchHHHHHHHHHHHhhccccE--EEEcchhhh--cch--HHHHhhcccCC-CC-CCCeEeeccCcC
Q 012513 159 VPVHGRDFIEPVQQRKNKAYRFLLSFRKQYHLAAG--IMVNSFMEL--ETG--PFKALMEGESS-FN-PPPVYPVGPLIQ 230 (462)
Q Consensus 159 ~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~l~~s~~~l--~~~--~~~~l~~~~~~-~~-~p~v~~vGpl~~ 230 (462)
.+.+...++.............. .....+...+ +..+.+..+ ... ...+....+.+ .. +-...++||+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 223 (406)
T COG1819 146 LPIPLYPLPPRLVRPLIFARSWL--PKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLG 223 (406)
T ss_pred ccccccccChhhccccccchhhh--hhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccccccc
Confidence 01111111111100000000000 0000011111 011111110 000 00010100000 00 114556666654
Q ss_pred CCCCCCCCCCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCC
Q 012513 231 TGSTNETNKRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKD 310 (462)
Q Consensus 231 ~~~~~~~~~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 310 (462)
... .+...|... ++++||+||||+... .+.++.++++|+.++.++|...+. .. .
T Consensus 224 ~~~--------~~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~--------------~ 277 (406)
T COG1819 224 EAA--------NELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-AR--------------D 277 (406)
T ss_pred ccc--------ccCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-cc--------------c
Confidence 433 444456444 456999999998766 888999999999999999998866 22 1
Q ss_pred CCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhccccee
Q 012513 311 PLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVS 390 (462)
Q Consensus 311 ~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G 390 (462)
....+|+ |+.+.+|+||.++|++++ +||||||+|||+|||++|||+|++|...||+.||.|+++ +|+|
T Consensus 278 ~~~~~p~---------n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G 345 (406)
T COG1819 278 TLVNVPD---------NVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAG 345 (406)
T ss_pred ccccCCC---------ceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCc
Confidence 2345665 788999999999999999 999999999999999999999999999999999999999 9999
Q ss_pred EEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 012513 391 FRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRW 454 (462)
Q Consensus 391 ~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 454 (462)
..++..+ ++.+.|+++|+++|++ ++|+++++++++.+++ .+| .+.+.+++++.
T Consensus 346 ~~l~~~~---l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~~---~~g--~~~~a~~le~~ 398 (406)
T COG1819 346 IALPFEE---LTEERLRAAVNEVLAD---DSYRRAAERLAEEFKE---EDG--PAKAADLLEEF 398 (406)
T ss_pred eecCccc---CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhh---ccc--HHHHHHHHHHH
Confidence 9999887 9999999999999999 4999999999999997 355 44455555553
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.89 E-value=7e-21 Score=185.74 Aligned_cols=324 Identities=15% Similarity=0.105 Sum_probs=187.8
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCch
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVPI 91 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 91 (462)
.+|++.+.++-||+.|.+++|++|.++ ||+|.|++...-.+ ...+.. .++.+..++... +.. ...
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~~~e--------~~l~~~--~g~~~~~~~~~~---l~~-~~~ 66 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQGIE--------KTIIEK--ENIPYYSISSGK---LRR-YFD 66 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCCccc--------cccCcc--cCCcEEEEeccC---cCC-Cch
Confidence 479999999999999999999999887 99999999764332 112111 146666655321 111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcch--HHHHHHHcCCccccccCCCCCCccCCCCCcCCCCCCCCc
Q 012513 92 ETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSA--AFDVANELDVKFNCEYRDMPEPVQLPGCVPVHGRDFIEP 169 (462)
Q Consensus 92 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~--~~~vA~~lgI~~~~~~~~~~~~~~~p~~~p~~~~~~~~~ 169 (462)
+..+...+..... ..+.+ .++++.+||+||..--+.. +..+|..+++++...-. ..+|+
T Consensus 67 ~~~~~~~~~~~~~-~~~~~-~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~-----n~~~g------------ 127 (352)
T PRK12446 67 LKNIKDPFLVMKG-VMDAY-VRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES-----DMTPG------------ 127 (352)
T ss_pred HHHHHHHHHHHHH-HHHHH-HHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECC-----CCCcc------------
Confidence 2222222222111 11111 2335569999997553333 34677778882111000 00011
Q ss_pred hhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEeeccCcCCCCCCCCCCCcchhhcccC
Q 012513 170 VQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVGPLIQTGSTNETNKRSPACLKWLD 249 (462)
Q Consensus 170 ~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~wl~ 249 (462)
..+. +..++ ++.+ ..+|.+.. ..+ +..++.++|+-......... . ++...-+.
T Consensus 128 ---~~nr----~~~~~-----a~~v-~~~f~~~~----~~~-------~~~k~~~tG~Pvr~~~~~~~-~--~~~~~~~~ 180 (352)
T PRK12446 128 ---LANK----IALRF-----ASKI-FVTFEEAA----KHL-------PKEKVIYTGSPVREEVLKGN-R--EKGLAFLG 180 (352)
T ss_pred ---HHHH----HHHHh-----hCEE-EEEccchh----hhC-------CCCCeEEECCcCCccccccc-c--hHHHHhcC
Confidence 1111 11111 1112 22332211 111 11368899954332221100 1 12211122
Q ss_pred CCCCCeEEEEEeCCCCCCCHH-HHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCce
Q 012513 250 EQPSESVLFVCFGSGGTLSQE-QLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGL 328 (462)
Q Consensus 250 ~~~~~~~v~vs~Gs~~~~~~~-~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 328 (462)
-.+++++|+|.-||....... .+.+++..+.. +.+++|..+.... +....+. .++
T Consensus 181 l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~---------------------~~~~~~~--~~~ 236 (352)
T PRK12446 181 FSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNL---------------------DDSLQNK--EGY 236 (352)
T ss_pred CCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchH---------------------HHHHhhc--CCc
Confidence 123456999999996543332 23334444422 4677887775321 0001111 233
Q ss_pred EeccCc-c-hhhhhccccccccccccCchhHHHHHHhCCceeecccc-----cchhhhhHHhhcccceeEEeeecCCccc
Q 012513 329 VVPSWS-P-QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY-----SEQKMNAVLLTDDLKVSFRVKVNENGLV 401 (462)
Q Consensus 329 ~~~~~~-p-q~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~-----~DQ~~~a~rv~~~~g~G~~~~~~~~~~~ 401 (462)
.+.+|+ + -.++|.+++ ++|||||.+|+.|++++|+|+|++|+. .||..||..+++ .|+|..+..++ +
T Consensus 237 ~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~~~~---~ 310 (352)
T PRK12446 237 RQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVLYEED---V 310 (352)
T ss_pred EEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcchhc---C
Confidence 445777 4 478999999 999999999999999999999999985 489999999999 99999998776 8
Q ss_pred CHHHHHHHHHHHhcCchHHHHHHHHHH
Q 012513 402 GREDIANYAKGLIQGEEGKLLRKKMRA 428 (462)
Q Consensus 402 ~~~~l~~ai~~vl~~~~~~~~r~~a~~ 428 (462)
+++.|.+++.+++.|+ +.|++++++
T Consensus 311 ~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 311 TVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred CHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 9999999999999875 356655544
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.89 E-value=3.5e-21 Score=186.59 Aligned_cols=308 Identities=17% Similarity=0.161 Sum_probs=178.8
Q ss_pred cEEEEEcCC-CcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCc
Q 012513 12 AHVAMVPTP-GMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVP 90 (462)
Q Consensus 12 ~~ill~~~p-~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 90 (462)
|||++...+ +.||+...+.||++| | ||+|+|++...... .+. ..+....+++..........+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGPAPE----------FLK---PRFPVREIPGLGPIQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCCcHH----------Hhc---cccCEEEccCceEeccCCccc
Confidence 788888877 999999999999999 7 99999999763222 111 012333333332222112222
Q ss_pred hHHHHHHHH---HHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccccccCCCCCCccCCCCCcCCCCCCC
Q 012513 91 IETRIILTL---VRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNCEYRDMPEPVQLPGCVPVHGRDFI 167 (462)
Q Consensus 91 ~~~~l~~~~---~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~~~~~~~~~~~~p~~~p~~~~~~~ 167 (462)
....+.... ......+.+. .+++++.+||+||+|. .+.+..+|+..||+..+.-...... .+.+ .+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~--~~~~------~~~ 134 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRRE-IRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFL--HPNF------WLP 134 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHHH-HHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcc--cccC------Ccc
Confidence 222222222 1112222222 2334566999999995 4445678888998322111100000 0000 000
Q ss_pred CchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEeeccCcCCCCCCCCCCCcchhhcc
Q 012513 168 EPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVGPLIQTGSTNETNKRSPACLKW 247 (462)
Q Consensus 168 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~w 247 (462)
. .+........+.... ........+.-++. .... ...++.++||+........
T Consensus 135 ~--~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~------------~~~~~~~~~p~~~~~~~~~----------- 187 (318)
T PF13528_consen 135 W--DQDFGRLIERYIDRY-HFPPADRRLALSFY-PPLP------------PFFRVPFVGPIIRPEIREL----------- 187 (318)
T ss_pred h--hhhHHHHHHHhhhhc-cCCcccceecCCcc-cccc------------ccccccccCchhccccccc-----------
Confidence 0 001111111111111 01111112221221 0000 1125667888765433211
Q ss_pred cCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCC-CceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCC
Q 012513 248 LDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSG-QRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGV 326 (462)
Q Consensus 248 l~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 326 (462)
.. .+++.|+|+||..... .++++++..+ ..+++. +.... . .+..
T Consensus 188 ~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~-----------------~---------~~~~ 232 (318)
T PF13528_consen 188 PP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA-----------------D---------PRPG 232 (318)
T ss_pred CC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc-----------------c---------ccCC
Confidence 11 1245899999996332 6667777766 455444 43221 0 0133
Q ss_pred ceEeccCc--chhhhhccccccccccccCchhHHHHHHhCCceeeccc--ccchhhhhHHhhcccceeEEeeecCCcccC
Q 012513 327 GLVVPSWS--PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL--YSEQKMNAVLLTDDLKVSFRVKVNENGLVG 402 (462)
Q Consensus 327 ~~~~~~~~--pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~--~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~ 402 (462)
|+.+..|. ...++|..++ ++|+|||+||++|++++|+|+|++|. ..+|..||..+++ .|+|..+..++ ++
T Consensus 233 ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~~~---~~ 306 (318)
T PF13528_consen 233 NIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQED---LT 306 (318)
T ss_pred CEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEccccc---CC
Confidence 77777765 4578999999 99999999999999999999999999 7899999999999 99999998776 99
Q ss_pred HHHHHHHHHHH
Q 012513 403 REDIANYAKGL 413 (462)
Q Consensus 403 ~~~l~~ai~~v 413 (462)
++.|+++|+++
T Consensus 307 ~~~l~~~l~~~ 317 (318)
T PF13528_consen 307 PERLAEFLERL 317 (318)
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.82 E-value=1.5e-18 Score=167.96 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=70.4
Q ss_pred ceEeccCcc--hhhhhccccccccccccCchhHHHHHHhCCceeeccccc--chhhhhHHhhcccceeEEeeecCCcccC
Q 012513 327 GLVVPSWSP--QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVG 402 (462)
Q Consensus 327 ~~~~~~~~p--q~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~g~G~~~~~~~~~~~~ 402 (462)
|+.+.+|.| ..+.|+.++ ++|||||++|++||+++|+|++++|... ||..||..+++ .|+|+.+...+ +
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~---~- 302 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKE---L- 302 (321)
T ss_pred CEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhh---H-
Confidence 677778997 467778888 9999999999999999999999999855 89999999999 99999987665 4
Q ss_pred HHHHHHHHHHHhcCc
Q 012513 403 REDIANYAKGLIQGE 417 (462)
Q Consensus 403 ~~~l~~ai~~vl~~~ 417 (462)
++.+++.++++|+
T Consensus 303 --~~~~~~~~~~~~~ 315 (321)
T TIGR00661 303 --RLLEAILDIRNMK 315 (321)
T ss_pred --HHHHHHHhccccc
Confidence 6666777777774
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=5.6e-17 Score=156.61 Aligned_cols=324 Identities=18% Similarity=0.206 Sum_probs=184.6
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCC-EEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCc
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNF-LVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVP 90 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 90 (462)
|+|++...++-||+.|-++|+++|.++ |+ +|.++.+....+ ....+.. ++.+..++...... ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~~e--------~~l~~~~--~~~~~~I~~~~~~~----~~ 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDGLE--------AFLVKQY--GIEFELIPSGGLRR----KG 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEecccccce--------eeecccc--CceEEEEecccccc----cC
Confidence 468888999999999999999999998 99 577776543332 1111111 45565554322111 11
Q ss_pred hHHHHHHHHH--HHHHHHHHHHHHHhccCCccEEEeCC--CcchHHHHHHHcCCccccccCCCCCCccCCCCCcCCCCCC
Q 012513 91 IETRIILTLV--RSLSSLRDALKVLTESTRLVALVVDC--FGSAAFDVANELDVKFNCEYRDMPEPVQLPGCVPVHGRDF 166 (462)
Q Consensus 91 ~~~~l~~~~~--~~~~~~~~~l~~~~~~~~~D~vI~D~--~~~~~~~vA~~lgI~~~~~~~~~~~~~~~p~~~p~~~~~~ 166 (462)
.+..+...+. .........+ ++.+||+||.=- .+..+..+|..+||++...-.+ ..||.
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~il----~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn-----~~~G~-------- 128 (357)
T COG0707 66 SLKLLKAPFKLLKGVLQARKIL----KKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN-----AVPGL-------- 128 (357)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH----HHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecC-----CCcch--------
Confidence 1222222222 2222233344 445999999733 3333445677788722211100 01121
Q ss_pred CCchhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEeec-cCcCCCCCCCCCCCcchhh
Q 012513 167 IEPVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVG-PLIQTGSTNETNKRSPACL 245 (462)
Q Consensus 167 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vG-pl~~~~~~~~~~~~~~~~~ 245 (462)
.+...... +..+ ..++.+.+.. . ...++..+| |+...-.. .+ ....
T Consensus 129 -------ank~~~~~---------a~~V-~~~f~~~~~~--------~---~~~~~~~tG~Pvr~~~~~-~~----~~~~ 175 (357)
T COG0707 129 -------ANKILSKF---------AKKV-ASAFPKLEAG--------V---KPENVVVTGIPVRPEFEE-LP----AAEV 175 (357)
T ss_pred -------hHHHhHHh---------hcee-eecccccccc--------C---CCCceEEecCcccHHhhc-cc----hhhh
Confidence 11111111 1111 2233221111 0 112588888 55433221 11 1111
Q ss_pred cccCCCCCCeEEEEEeCCCCCCCH-HHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhC
Q 012513 246 KWLDEQPSESVLFVCFGSGGTLSQ-EQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK 324 (462)
Q Consensus 246 ~wl~~~~~~~~v~vs~Gs~~~~~~-~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~ 324 (462)
..... ..+++|.|.-||.....- +.+.+++..+.. +..++...+.+.. +.....+.
T Consensus 176 ~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~---------------------~~~~~~~~ 232 (357)
T COG0707 176 RKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDL---------------------EELKSAYN 232 (357)
T ss_pred hhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchH---------------------HHHHHHHh
Confidence 11111 135699998888533221 223333333333 3455555554321 33334444
Q ss_pred CCc-eEeccCcch-hhhhccccccccccccCchhHHHHHHhCCceeecccc----cchhhhhHHhhcccceeEEeeecCC
Q 012513 325 GVG-LVVPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY----SEQKMNAVLLTDDLKVSFRVKVNEN 398 (462)
Q Consensus 325 ~~~-~~~~~~~pq-~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~----~DQ~~~a~rv~~~~g~G~~~~~~~~ 398 (462)
+.+ +.+..|..+ .++|..++ ++||+.|.+|+.|.+++|+|+|.+|.- .+|..||..+++ .|+|..++..+
T Consensus 233 ~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~-~gaa~~i~~~~- 308 (357)
T COG0707 233 ELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEK-AGAALVIRQSE- 308 (357)
T ss_pred hcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHh-CCCEEEecccc-
Confidence 444 666788776 88899999 999999999999999999999999953 378999999999 99999999887
Q ss_pred cccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 012513 399 GLVGREDIANYAKGLIQGEE-GKLLRKKMRAL 429 (462)
Q Consensus 399 ~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l 429 (462)
+|.+++.+.|.+++++++ -..++++++.+
T Consensus 309 --lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 309 --LTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred --CCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999999998741 23344444433
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.78 E-value=6.2e-16 Score=152.36 Aligned_cols=345 Identities=14% Similarity=0.110 Sum_probs=190.4
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCc
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVP 90 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 90 (462)
+|||+++..+..||...++.|+++|.++ ||+|++++.+.... ...+.. .++.++.++.... . +..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~~--------~~~~~~--~g~~~~~~~~~~~---~-~~~ 65 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTARGME--------ARLVPK--AGIEFHFIPSGGL---R-RKG 65 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCCchh--------hhcccc--CCCcEEEEeccCc---C-CCC
Confidence 4899999998889999999999999988 99999998753111 111111 2455554432211 1 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCc-ch-HHHHHHHcCCccccccCCCCCCccCCCCCcCCCCCCCC
Q 012513 91 IETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFG-SA-AFDVANELDVKFNCEYRDMPEPVQLPGCVPVHGRDFIE 168 (462)
Q Consensus 91 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~-~~-~~~vA~~lgI~~~~~~~~~~~~~~~p~~~p~~~~~~~~ 168 (462)
....+...... ...+. .+.+++++.+||+|++.... .+ +..++...+++....... . .+.
T Consensus 66 ~~~~l~~~~~~-~~~~~-~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~------------~----~~~ 127 (357)
T PRK00726 66 SLANLKAPFKL-LKGVL-QARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN------------A----VPG 127 (357)
T ss_pred hHHHHHHHHHH-HHHHH-HHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC------------C----Ccc
Confidence 11111111111 11111 12333445589999988632 22 233455555522111000 0 000
Q ss_pred chhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEeeccCcCCCCCCCCCCCcchhhccc
Q 012513 169 PVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVGPLIQTGSTNETNKRSPACLKWL 248 (462)
Q Consensus 169 ~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~wl 248 (462)
+ ..++.. ...+.+... ..+. . ... ...+++++|+.......... ..-..+
T Consensus 128 ----~----~~r~~~-----~~~d~ii~~-~~~~---~----~~~----~~~~i~vi~n~v~~~~~~~~----~~~~~~- 177 (357)
T PRK00726 128 ----L----ANKLLA-----RFAKKVATA-FPGA---F----PEF----FKPKAVVTGNPVREEILALA----APPARL- 177 (357)
T ss_pred ----H----HHHHHH-----HHhchheEC-chhh---h----hcc----CCCCEEEECCCCChHhhccc----chhhhc-
Confidence 0 011110 111222221 1111 0 011 23578888855432211100 100011
Q ss_pred CCCCCCeEEEEEeCCCCCCCHHHHHH-HHHHHHhCCC--ceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhC-
Q 012513 249 DEQPSESVLFVCFGSGGTLSQEQLNE-LALGLEMSGQ--RFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK- 324 (462)
Q Consensus 249 ~~~~~~~~v~vs~Gs~~~~~~~~~~~-i~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~- 324 (462)
...+...+|++.-|+. ....+.. +.++++.... .++|.++.+.. +...+..+
T Consensus 178 ~~~~~~~~i~~~gg~~---~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~---------------------~~~~~~~~~ 233 (357)
T PRK00726 178 AGREGKPTLLVVGGSQ---GARVLNEAVPEALALLPEALQVIHQTGKGDL---------------------EEVRAAYAA 233 (357)
T ss_pred cCCCCCeEEEEECCcH---hHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH---------------------HHHHHHhhc
Confidence 1112233555544442 2232333 3366655543 34445554322 22222222
Q ss_pred CCceEeccCc-chhhhhccccccccccccCchhHHHHHHhCCceeeccc----ccchhhhhHHhhcccceeEEeeecCCc
Q 012513 325 GVGLVVPSWS-PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL----YSEQKMNAVLLTDDLKVSFRVKVNENG 399 (462)
Q Consensus 325 ~~~~~~~~~~-pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~----~~DQ~~~a~rv~~~~g~G~~~~~~~~~ 399 (462)
+-++.+.+|+ +..++|+.++ ++|+|+|.++++||+++|+|+|++|. ..+|..|+..+.+ .|.|..+..++
T Consensus 234 ~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~~-- 308 (357)
T PRK00726 234 GINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAALLIPQSD-- 308 (357)
T ss_pred CCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEccc--
Confidence 1126677888 4589999999 89999999999999999999999997 3689999999999 89999998776
Q ss_pred ccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 012513 400 LVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWK 455 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 455 (462)
+++++++++|.++++|+ ++++.+.+-+..+. +.++..+..+.+.+.++
T Consensus 309 -~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 309 -LTPEKLAEKLLELLSDP---ERLEAMAEAARALG----KPDAAERLADLIEELAR 356 (357)
T ss_pred -CCHHHHHHHHHHHHcCH---HHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhh
Confidence 78999999999999984 66655555443332 45666666666666554
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.67 E-value=1.3e-13 Score=135.35 Aligned_cols=313 Identities=15% Similarity=0.090 Sum_probs=172.8
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCchH
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVPIE 92 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 92 (462)
||++...++-||....+.|++.|.++ ||+|++++...-.. ..... ..++++..++.... . +....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~---~-~~~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRGLE--------ARLVP--KAGIPLHTIPVGGL---R-RKGSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCcch--------hhccc--ccCCceEEEEecCc---C-CCChH
Confidence 58899999999999999999999887 99999998753211 11111 11345544443211 0 11112
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhccCCccEEEeCCCc--chHHHHHHHcCCccccccCCCCCCccCCCCCcCCCCCCCC
Q 012513 93 TRIILTL--VRSLSSLRDALKVLTESTRLVALVVDCFG--SAAFDVANELDVKFNCEYRDMPEPVQLPGCVPVHGRDFIE 168 (462)
Q Consensus 93 ~~l~~~~--~~~~~~~~~~l~~~~~~~~~D~vI~D~~~--~~~~~vA~~lgI~~~~~~~~~~~~~~~p~~~p~~~~~~~~ 168 (462)
..+.... ......+. .++++.+||+|++.... ..+..+|...+++...... .. .+.
T Consensus 66 ~~~~~~~~~~~~~~~~~----~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~---------~~-------~~~ 125 (350)
T cd03785 66 KKLKAPFKLLKGVLQAR----KILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQ---------NA-------VPG 125 (350)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcC---------CC-------Ccc
Confidence 2222211 11112222 33345589999986532 2334566667773221100 00 000
Q ss_pred chhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEeeccCcCCCCCCCCCCCcchhhccc
Q 012513 169 PVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVGPLIQTGSTNETNKRSPACLKWL 248 (462)
Q Consensus 169 ~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~wl 248 (462)
....+. ....+.+...+-...+. . ...++.++|........... .. ..++
T Consensus 126 --------~~~~~~-----~~~~~~vi~~s~~~~~~--------~----~~~~~~~i~n~v~~~~~~~~----~~-~~~~ 175 (350)
T cd03785 126 --------LANRLL-----ARFADRVALSFPETAKY--------F----PKDKAVVTGNPVREEILALD----RE-RARL 175 (350)
T ss_pred --------HHHHHH-----HHhhCEEEEcchhhhhc--------C----CCCcEEEECCCCchHHhhhh----hh-HHhc
Confidence 011111 11233444332221111 1 12367788754432211000 11 1122
Q ss_pred CCCCCCeEEEEEeCCCCCCC-HHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhC--C
Q 012513 249 DEQPSESVLFVCFGSGGTLS-QEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK--G 325 (462)
Q Consensus 249 ~~~~~~~~v~vs~Gs~~~~~-~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~ 325 (462)
...+++.+|.+..|+..... .+.+.++++.+...+..+++.++.... +.+.+..+ .
T Consensus 176 ~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~---------------------~~l~~~~~~~~ 234 (350)
T cd03785 176 GLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDL---------------------EEVKKAYEELG 234 (350)
T ss_pred CCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccH---------------------HHHHHHHhccC
Confidence 21223335555555542211 112223334443323344555554311 22222222 3
Q ss_pred CceEeccCc-chhhhhccccccccccccCchhHHHHHHhCCceeeccc----ccchhhhhHHhhcccceeEEeeecCCcc
Q 012513 326 VGLVVPSWS-PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL----YSEQKMNAVLLTDDLKVSFRVKVNENGL 400 (462)
Q Consensus 326 ~~~~~~~~~-pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~----~~DQ~~~a~rv~~~~g~G~~~~~~~~~~ 400 (462)
.++.+.+|+ ....+|+.++ ++|+++|.+|++||+++|+|+|++|. ..+|..|+..+.+ .|.|..+...+
T Consensus 235 ~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~--- 308 (350)
T cd03785 235 VNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-AGAAVLIPQEE--- 308 (350)
T ss_pred CCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCC---
Confidence 578888887 5578999999 89999999999999999999999986 3578889999999 89999987654
Q ss_pred cCHHHHHHHHHHHhcCc
Q 012513 401 VGREDIANYAKGLIQGE 417 (462)
Q Consensus 401 ~~~~~l~~ai~~vl~~~ 417 (462)
.+.+++.++|.++++++
T Consensus 309 ~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 309 LTPERLAAALLELLSDP 325 (350)
T ss_pred CCHHHHHHHHHHHhcCH
Confidence 68999999999999874
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.59 E-value=5.1e-13 Score=123.36 Aligned_cols=341 Identities=16% Similarity=0.135 Sum_probs=194.5
Q ss_pred CCCCcEEEEEcCC--CcCCHHHHHHHHHHHHhc-CCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCC
Q 012513 8 QIPRAHVAMVPTP--GMGHLIPLAQLAKRLVRQ-HNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDD 84 (462)
Q Consensus 8 ~~~~~~ill~~~p--~~GHv~P~l~La~~L~~r-~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 84 (462)
+.+.+||+|++.- +-||+.-...+|..|++. .|.+|++++...... .+ ..+.+++++.+|.....+
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~----------~F-~~~~gVd~V~LPsl~k~~ 74 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAG----------GF-PGPAGVDFVKLPSLIKGD 74 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccC----------CC-CCcccCceEecCceEecC
Confidence 4556799999985 779999999999999874 499999999764443 01 124588999888653221
Q ss_pred CCCCCchHH----HHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCCccccccCCCCCCccCCCCCc
Q 012513 85 LPDNVPIET----RIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDVKFNCEYRDMPEPVQLPGCVP 160 (462)
Q Consensus 85 ~~~~~~~~~----~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI~~~~~~~~~~~~~~~p~~~p 160 (462)
.+..... .+....... +++|-+..+..+||.+|+|.+-++.. -|.+.. ...+.... +..+-++
T Consensus 75 --~G~~~~~d~~~~l~e~~~~R----s~lil~t~~~fkPDi~IVd~~P~Glr--~EL~pt--L~yl~~~~-t~~vL~l-- 141 (400)
T COG4671 75 --NGEYGLVDLDGDLEETKKLR----SQLILSTAETFKPDIFIVDKFPFGLR--FELLPT--LEYLKTTG-TRLVLGL-- 141 (400)
T ss_pred --CCceeeeecCCCHHHHHHHH----HHHHHHHHHhcCCCEEEEeccccchh--hhhhHH--HHHHhhcC-Ccceeeh--
Confidence 1110000 121222222 22333333455999999999766521 111110 00000000 0000111
Q ss_pred CCCCCCCCchhhhchHH-HHHHHHHHHhhccccEE-EEcchhhhcchHHHHhhcccCCCCCCCeEeeccCcCCCCCCCCC
Q 012513 161 VHGRDFIEPVQQRKNKA-YRFLLSFRKQYHLAAGI-MVNSFMELETGPFKALMEGESSFNPPPVYPVGPLIQTGSTNETN 238 (462)
Q Consensus 161 ~~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~-l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vGpl~~~~~~~~~~ 238 (462)
+++.+........+ -+..++..+.....-++ -.+.|++++..+...- . -...+.|+|.+...-+....+
T Consensus 142 ---r~i~D~p~~~~~~w~~~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~-~-----i~~k~~ytG~vq~~~~~~~~p 212 (400)
T COG4671 142 ---RSIRDIPQELEADWRRAETVRLINRFYDLVLVYGDPDFYDPLTEFPFAP-A-----IRAKMRYTGFVQRSLPHLPLP 212 (400)
T ss_pred ---HhhhhchhhhccchhhhHHHHHHHHhheEEEEecCccccChhhcCCccH-h-----hhhheeEeEEeeccCcCCCCC
Confidence 11111110000000 00111222222111111 1245555554431110 0 113799999982211111111
Q ss_pred CCcchhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHh-CCCceEEEEeCCcccccccccccccCCCCCCCCCCh
Q 012513 239 KRSPACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEM-SGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPK 317 (462)
Q Consensus 239 ~~~~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 317 (462)
|... +++.-|.||-|.. ....+++...++|-.. .+.+-.|.+-.+ . .+|+
T Consensus 213 --------~~~~-pE~~~Ilvs~GGG-~dG~eLi~~~l~A~~~l~~l~~~~~ivtG------------P-------~MP~ 263 (400)
T COG4671 213 --------PHEA-PEGFDILVSVGGG-ADGAELIETALAAAQLLAGLNHKWLIVTG------------P-------FMPE 263 (400)
T ss_pred --------CcCC-CccceEEEecCCC-hhhHHHHHHHHHHhhhCCCCCcceEEEeC------------C-------CCCH
Confidence 1111 3344888988884 3456777776666554 233323433221 1 1455
Q ss_pred hHHHhh-----CCCceEeccCcch-hhhhccccccccccccCchhHHHHHHhCCceeeccccc---chhhhhHHhhcccc
Q 012513 318 GFLDRT-----KGVGLVVPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS---EQKMNAVLLTDDLK 388 (462)
Q Consensus 318 ~~~~~~-----~~~~~~~~~~~pq-~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~---DQ~~~a~rv~~~~g 388 (462)
...+++ +.+++.+..|-.+ ..++.-++ .+|+-||+||++|=|++|+|-+++|... +|..-|.|+++ +|
T Consensus 264 ~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~-LG 340 (400)
T COG4671 264 AQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEE-LG 340 (400)
T ss_pred HHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHh-cC
Confidence 444443 2357888788766 78888888 8999999999999999999999999855 89999999999 99
Q ss_pred eeEEeeecCCcccCHHHHHHHHHHHhcC
Q 012513 389 VSFRVKVNENGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 389 ~G~~~~~~~~~~~~~~~l~~ai~~vl~~ 416 (462)
+--.+-.++ +++..++++|...++-
T Consensus 341 L~dvL~pe~---lt~~~La~al~~~l~~ 365 (400)
T COG4671 341 LVDVLLPEN---LTPQNLADALKAALAR 365 (400)
T ss_pred cceeeCccc---CChHHHHHHHHhcccC
Confidence 988887776 9999999999999873
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.59 E-value=2.6e-12 Score=126.03 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=67.4
Q ss_pred chhhhhccccccccccccCchhHHHHHHhCCceeecccc---cchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHH
Q 012513 335 PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY---SEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAK 411 (462)
Q Consensus 335 pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~---~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~ 411 (462)
.-..+|+.++ ++|+++|.+|++||+++|+|+|++|.. .+|..|+..+.+ .+.|..+...+ .+.++|.++++
T Consensus 243 ~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~---~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKE---LLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEeccc---CCHHHHHHHHH
Confidence 5688899999 899999988999999999999999863 467888888988 89999887664 68999999999
Q ss_pred HHhcCc
Q 012513 412 GLIQGE 417 (462)
Q Consensus 412 ~vl~~~ 417 (462)
++++|+
T Consensus 317 ~ll~~~ 322 (348)
T TIGR01133 317 KLLLDP 322 (348)
T ss_pred HHHcCH
Confidence 999884
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.55 E-value=9.6e-13 Score=130.37 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=84.0
Q ss_pred chhhhhccccccccccccCchhHHHHHHhCCceeec----cccc---------chhhhhHHhhcccceeEEeeecCCccc
Q 012513 335 PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW----PLYS---------EQKMNAVLLTDDLKVSFRVKVNENGLV 401 (462)
Q Consensus 335 pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~----P~~~---------DQ~~~a~rv~~~~g~G~~~~~~~~~~~ 401 (462)
....+|..++ ++|+=.|..|+ |++++|+|+|++ |+.. +|..|++.+.. .++..++.-.+ .
T Consensus 260 ~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~-~~~~pel~q~~---~ 332 (385)
T TIGR00215 260 DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILAN-RLLVPELLQEE---C 332 (385)
T ss_pred hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcC-CccchhhcCCC---C
Confidence 3456899999 89999999887 999999999999 8643 27789999999 89998887666 9
Q ss_pred CHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 012513 402 GREDIANYAKGLIQGE-EGKLLRKKMRALKDAAANALSPDGSSTKSLAQVA 451 (462)
Q Consensus 402 ~~~~l~~ai~~vl~~~-~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 451 (462)
|++.|.+.+.+++.|+ +..++++..++--..+++...++|.+.+..+.++
T Consensus 333 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 333 TPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred CHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999999999999984 1114555555444455554456777777666554
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.52 E-value=3.3e-12 Score=126.93 Aligned_cols=133 Identities=20% Similarity=0.313 Sum_probs=92.9
Q ss_pred CeEEEEEeCCCCCCCHHHHHHHHHHHHhC-CCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhC--CCceEe
Q 012513 254 ESVLFVCFGSGGTLSQEQLNELALGLEMS-GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK--GVGLVV 330 (462)
Q Consensus 254 ~~~v~vs~Gs~~~~~~~~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~ 330 (462)
+++|++.-|+.... +.+..+++++... +.++++..+.+.. +-+.+.+..+ ++++.+
T Consensus 202 ~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~-------------------~~~~l~~~~~~~~~~v~~ 260 (380)
T PRK13609 202 KKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA-------------------LKQSLEDLQETNPDALKV 260 (380)
T ss_pred CcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH-------------------HHHHHHHHHhcCCCcEEE
Confidence 34677766765321 2356677777654 3455555443211 1112222111 247888
Q ss_pred ccCcch-hhhhccccccccccccCchhHHHHHHhCCceeec-ccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHH
Q 012513 331 PSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW-PLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIAN 408 (462)
Q Consensus 331 ~~~~pq-~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~-P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ 408 (462)
.+|+++ ..++..++ ++|+..|..|+.||+++|+|+|+. |..+.+..|+..+.+ .|+|+.. -+.+++.+
T Consensus 261 ~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~-------~~~~~l~~ 330 (380)
T PRK13609 261 FGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI-------RDDEEVFA 330 (380)
T ss_pred EechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE-------CCHHHHHH
Confidence 899987 58999999 899999988999999999999985 667777889888888 8988753 36789999
Q ss_pred HHHHHhcCc
Q 012513 409 YAKGLIQGE 417 (462)
Q Consensus 409 ai~~vl~~~ 417 (462)
+|.++++|+
T Consensus 331 ~i~~ll~~~ 339 (380)
T PRK13609 331 KTEALLQDD 339 (380)
T ss_pred HHHHHHCCH
Confidence 999999885
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.44 E-value=1.4e-11 Score=122.47 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=68.5
Q ss_pred hhhhhccccccccccccCchhHHHHHHhCCceeecccccchh-hhh------------HHhhcccceeEEeeecCCcccC
Q 012513 336 QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQK-MNA------------VLLTDDLKVSFRVKVNENGLVG 402 (462)
Q Consensus 336 q~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~-~~a------------~rv~~~~g~G~~~~~~~~~~~~ 402 (462)
-..++..++ ++|+-+|.+++ ||+++|+|+|+.|-..-.+ ..+ ..+++ .+++..+...+ .+
T Consensus 255 ~~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~---~~ 327 (380)
T PRK00025 255 KREAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAG-RELVPELLQEE---AT 327 (380)
T ss_pred HHHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcC-CCcchhhcCCC---CC
Confidence 477889999 89999998877 9999999999996443222 111 22222 23333333333 78
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhc
Q 012513 403 REDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKN 456 (462)
Q Consensus 403 ~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 456 (462)
++++.+++.++++|+ +.++...+-.+.+++.. ..|++.+.++.+.+.+.+
T Consensus 328 ~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 328 PEKLARALLPLLADG---ARRQALLEGFTELHQQL-RCGADERAAQAVLELLKQ 377 (380)
T ss_pred HHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhh
Confidence 999999999999986 44443333332233322 245666666666555443
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.43 E-value=6.2e-12 Score=118.89 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=76.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHHHHhC--CCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhC-CCceEec
Q 012513 255 SVLFVCFGSGGTLSQEQLNELALGLEMS--GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK-GVGLVVP 331 (462)
Q Consensus 255 ~~v~vs~Gs~~~~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~ 331 (462)
+.|+|+||..... ....+++++|... +.++.++++.... ..+.+.+..+ ..|+.+.
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~~-------------------~~~~l~~~~~~~~~i~~~ 229 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSNP-------------------NLDELKKFAKEYPNIILF 229 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCCc-------------------CHHHHHHHHHhCCCEEEE
Confidence 4899999975332 2455677777654 3456666665422 1122332222 3478788
Q ss_pred cCcch-hhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHH
Q 012513 332 SWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVL 382 (462)
Q Consensus 332 ~~~pq-~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~r 382 (462)
.++++ ..+|..++ ++|++|| +|++|+++.|+|+|++|...+|..||..
T Consensus 230 ~~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 230 IDVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred eCHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99987 69999999 8999999 9999999999999999999999999875
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.43 E-value=1.5e-14 Score=126.27 Aligned_cols=86 Identities=22% Similarity=0.304 Sum_probs=74.6
Q ss_pred CceEeccCcc-hhhhhccccccccccccCchhHHHHHHhCCceeeccccc----chhhhhHHhhcccceeEEeeecCCcc
Q 012513 326 VGLVVPSWSP-QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS----EQKMNAVLLTDDLKVSFRVKVNENGL 400 (462)
Q Consensus 326 ~~~~~~~~~p-q~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~----DQ~~~a~rv~~~~g~G~~~~~~~~~~ 400 (462)
.++.+.+|.+ ...++..++ ++|||||.||++|++++|+|+|++|... +|..|+..+++ .|+|..+....
T Consensus 55 ~~v~~~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~--- 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESE--- 128 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC---
T ss_pred CcEEEEechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCccc---
Confidence 4778889999 799999999 9999999999999999999999999988 99999999999 99999998776
Q ss_pred cCHHHHHHHHHHHhcCc
Q 012513 401 VGREDIANYAKGLIQGE 417 (462)
Q Consensus 401 ~~~~~l~~ai~~vl~~~ 417 (462)
.+.+.|.++|.+++.++
T Consensus 129 ~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDP 145 (167)
T ss_dssp -SCCCHHHHHHCHCCCH
T ss_pred CCHHHHHHHHHHHHcCc
Confidence 78999999999999885
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.25 E-value=7.4e-09 Score=103.15 Aligned_cols=164 Identities=9% Similarity=0.143 Sum_probs=105.2
Q ss_pred CeEEEEEeCCCCCCCHHHHHHHHHHHHhC--CCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhh-CCCceEe
Q 012513 254 ESVLFVCFGSGGTLSQEQLNELALGLEMS--GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT-KGVGLVV 330 (462)
Q Consensus 254 ~~~v~vs~Gs~~~~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~ 330 (462)
+++|.+..|+... ...+..+++++... +.+++++.+.+.. +-+.+.+.. ..+++.+
T Consensus 202 ~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~-------------------l~~~l~~~~~~~~~v~~ 260 (391)
T PRK13608 202 KQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE-------------------LKRSLTAKFKSNENVLI 260 (391)
T ss_pred CCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH-------------------HHHHHHHHhccCCCeEE
Confidence 4578887888542 23455555554322 2355555443211 101122222 2346778
Q ss_pred ccCcch-hhhhccccccccccccCchhHHHHHHhCCceeec-ccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHH
Q 012513 331 PSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW-PLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIAN 408 (462)
Q Consensus 331 ~~~~pq-~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~-P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ 408 (462)
.+|+++ ..++..++ ++|+-.|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|+|+.. -+.+++.+
T Consensus 261 ~G~~~~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~-------~~~~~l~~ 330 (391)
T PRK13608 261 LGYTKHMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIA-------DTPEEAIK 330 (391)
T ss_pred EeccchHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEe-------CCHHHHHH
Confidence 899875 67899999 899988888999999999999998 666667789999999 9999764 36789999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 012513 409 YAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWK 455 (462)
Q Consensus 409 ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 455 (462)
+|.++++|+ +.++ ++++.+++.. +..+....++.+++.+.
T Consensus 331 ~i~~ll~~~---~~~~---~m~~~~~~~~-~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 331 IVASLTNGN---EQLT---NMISTMEQDK-IKYATQTICRDLLDLIG 370 (391)
T ss_pred HHHHHhcCH---HHHH---HHHHHHHHhc-CCCCHHHHHHHHHHHhh
Confidence 999999885 3222 2233333221 24455555555554443
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.13 E-value=4.8e-09 Score=104.30 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=69.7
Q ss_pred CceEeccCcch-hhhhccccccccccccCchhHHHHHHhCCceeecccccchh-hhhHHhhcccceeEEeeecCCcccCH
Q 012513 326 VGLVVPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQK-MNAVLLTDDLKVSFRVKVNENGLVGR 403 (462)
Q Consensus 326 ~~~~~~~~~pq-~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~-~~a~rv~~~~g~G~~~~~~~~~~~~~ 403 (462)
.++.+.+|+++ ..++..++ ++|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|+.+ -++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~-------~~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS-------ESP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec-------CCH
Confidence 35777899886 78899999 8999999999999999999999998777775 68888888 8999754 378
Q ss_pred HHHHHHHHHHhcC
Q 012513 404 EDIANYAKGLIQG 416 (462)
Q Consensus 404 ~~l~~ai~~vl~~ 416 (462)
+++.++|.+++.+
T Consensus 335 ~~la~~i~~ll~~ 347 (382)
T PLN02605 335 KEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHcC
Confidence 8999999999987
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.09 E-value=1.1e-11 Score=104.63 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=70.4
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCchHH
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVPIET 93 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 93 (462)
|+|.+.|+.||++|+++||++|++| ||+|++++++.+.+ ..+. .|++|..++.. ...........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~~~~------~v~~------~Gl~~~~~~~~--~~~~~~~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPPDFRE------RVEA------AGLEFVPIPGD--SRLPRSLEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGGGHH------HHHH------TT-EEEESSSC--GGGGHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeeccccee------cccc------cCceEEEecCC--cCcCcccchhh
Confidence 7899999999999999999999998 99999999986554 2222 27899988764 01111001111
Q ss_pred HHHHHHHH--HHHHHHHHHHHHh--------ccCCccEEEeCCCcchHHHHHHHcCC
Q 012513 94 RIILTLVR--SLSSLRDALKVLT--------ESTRLVALVVDCFGSAAFDVANELDV 140 (462)
Q Consensus 94 ~l~~~~~~--~~~~~~~~l~~~~--------~~~~~D~vI~D~~~~~~~~vA~~lgI 140 (462)
.+...... ......+.+++.. .....|+++.+.....+..+||+++|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~i 122 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGI 122 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCc
Confidence 11111111 1222223333221 11357888889988888899999999
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.09 E-value=2e-07 Score=91.23 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=62.1
Q ss_pred CCceEeccCcchhh---hhccccccccccccC----chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecC
Q 012513 325 GVGLVVPSWSPQVQ---VLRHGSTGGFLSHCG----WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 397 (462)
Q Consensus 325 ~~~~~~~~~~pq~~---lL~~~~~~~~I~HGG----~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~ 397 (462)
.+++.+.+|+++.+ ++..++ ++|..+. .++++||+++|+|+|+.+..+ +...+++ .+.|.....
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~-~~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTD-GENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcC-CcceEEcCC--
Confidence 34788889999755 688888 6775543 478999999999999887554 4455666 678877653
Q ss_pred CcccCHHHHHHHHHHHhcCc
Q 012513 398 NGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 398 ~~~~~~~~l~~ai~~vl~~~ 417 (462)
-+.+++.++|.+++.|+
T Consensus 317 ---~~~~~l~~~i~~l~~~~ 333 (364)
T cd03814 317 ---GDAEAFAAALAALLADP 333 (364)
T ss_pred ---CCHHHHHHHHHHHHcCH
Confidence 36788999999999985
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.99 E-value=4.4e-07 Score=92.72 Aligned_cols=140 Identities=17% Similarity=0.122 Sum_probs=84.5
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcc
Q 012513 256 VLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSP 335 (462)
Q Consensus 256 ~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~p 335 (462)
.+++..|+.. ..+.+..++++++..+.--+..++.+.. .+.+.+..++.++...+++|
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~~--------------------~~~l~~~~~~~~V~f~G~v~ 321 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGPY--------------------REELEKMFAGTPTVFTGMLQ 321 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCChH--------------------HHHHHHHhccCCeEEeccCC
Confidence 5556668753 2344666778887764333334443211 12333334456788889998
Q ss_pred hhh---hhccccccccccc----cCchhHHHHHHhCCceeecccccchhhhhHHhhc--ccceeEEeeecCCcccCHHHH
Q 012513 336 QVQ---VLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTD--DLKVSFRVKVNENGLVGREDI 406 (462)
Q Consensus 336 q~~---lL~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~--~~g~G~~~~~~~~~~~~~~~l 406 (462)
+++ ++..++ +||.- |-.++++||+++|+|+|+....+ ....+.+ .-+.|..+.. -+.+++
T Consensus 322 ~~ev~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~-----~d~~~l 390 (465)
T PLN02871 322 GDELSQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTP-----GDVDDC 390 (465)
T ss_pred HHHHHHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCC-----CCHHHH
Confidence 644 677788 56632 33457999999999999876543 1122221 0356776653 367899
Q ss_pred HHHHHHHhcCch-HHHHHHHHHH
Q 012513 407 ANYAKGLIQGEE-GKLLRKKMRA 428 (462)
Q Consensus 407 ~~ai~~vl~~~~-~~~~r~~a~~ 428 (462)
+++|.++++|++ ...+.+++++
T Consensus 391 a~~i~~ll~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 391 VEKLETLLADPELRERMGAAARE 413 (465)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999998852 2234444443
No 46
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.96 E-value=1.8e-06 Score=86.11 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=60.7
Q ss_pred CCceEeccCcchhhh---hccccccccccc----cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecC
Q 012513 325 GVGLVVPSWSPQVQV---LRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 397 (462)
Q Consensus 325 ~~~~~~~~~~pq~~l---L~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~ 397 (462)
.+++.+.+|+|+.++ +..++ +++.. |-..+++||+++|+|+|+....+ ....+++ -+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~-~~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVD-GVTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccC-CCCeEEeCC--
Confidence 357888899998654 77888 56633 33468999999999999876543 4455666 577877653
Q ss_pred CcccCHHHHHHHHHHHhcCc
Q 012513 398 NGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 398 ~~~~~~~~l~~ai~~vl~~~ 417 (462)
-+.++++++|.+++.++
T Consensus 353 ---~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 353 ---RDPEALAAALRRLLTDP 369 (398)
T ss_pred ---CCHHHHHHHHHHHHhCH
Confidence 36899999999999875
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.95 E-value=1.9e-06 Score=84.11 Aligned_cols=81 Identities=22% Similarity=0.112 Sum_probs=59.3
Q ss_pred CCceEeccCcchhh---hhccccccccc--c---ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeec
Q 012513 325 GVGLVVPSWSPQVQ---VLRHGSTGGFL--S---HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN 396 (462)
Q Consensus 325 ~~~~~~~~~~pq~~---lL~~~~~~~~I--~---HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~ 396 (462)
.+++.+.+++++.. ++..++ ++| + -|...++.||+++|+|+|+.+.. .+...+.+ -+.|..+...
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad--~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEID--VLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRD-GVNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcC-CCcEEEECCC
Confidence 45788889998654 577888 455 2 23344899999999999987654 45555666 4567776533
Q ss_pred CCcccCHHHHHHHHHHHhcCc
Q 012513 397 ENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 397 ~~~~~~~~~l~~ai~~vl~~~ 417 (462)
+.+++.+++.++++++
T Consensus 315 -----d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 315 -----DAEDLAAALERLIDDP 330 (359)
T ss_pred -----CHHHHHHHHHHHHhCh
Confidence 5799999999999875
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.94 E-value=6.9e-06 Score=82.14 Aligned_cols=83 Identities=16% Similarity=0.108 Sum_probs=58.3
Q ss_pred CCceEeccCcchhh---hhccccccccccc-cC-chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCc
Q 012513 325 GVGLVVPSWSPQVQ---VLRHGSTGGFLSH-CG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 399 (462)
Q Consensus 325 ~~~~~~~~~~pq~~---lL~~~~~~~~I~H-GG-~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~ 399 (462)
.+++...+++|+.+ +|..+++-++-+. .| .++++||+++|+|+|+... ......+.. -..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~-~~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITD-GENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhccc-CCceEEcCC----
Confidence 35788889999865 5667884232232 23 3489999999999998654 344455555 356776653
Q ss_pred ccCHHHHHHHHHHHhcCc
Q 012513 400 LVGREDIANYAKGLIQGE 417 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~~~ 417 (462)
-+.++++++|.++++|+
T Consensus 351 -~d~~~la~~i~~ll~~~ 367 (396)
T cd03818 351 -FDPDALAAAVIELLDDP 367 (396)
T ss_pred -CCHHHHHHHHHHHHhCH
Confidence 36899999999999885
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=1e-07 Score=86.09 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=99.2
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhh-CCCceEeccCc
Q 012513 256 VLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT-KGVGLVVPSWS 334 (462)
Q Consensus 256 ~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~~~ 334 (462)
-|+|+||.. .+.....+++..|.+.++.+-+++++..+ -+++...+. +.+++......
T Consensus 160 ~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~~p-------------------~l~~l~k~~~~~~~i~~~~~~ 218 (318)
T COG3980 160 DILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSSNP-------------------TLKNLRKRAEKYPNINLYIDT 218 (318)
T ss_pred eEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCCCc-------------------chhHHHHHHhhCCCeeeEecc
Confidence 699999872 33446778999998888777777775332 223444444 23454442222
Q ss_pred -chhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHH
Q 012513 335 -PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGL 413 (462)
Q Consensus 335 -pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~v 413 (462)
.-..++..++ +.|+-||. |+.|++.-|+|.+++|+...|.--|.-.++ +|+-..+... ++.+....-+..+
T Consensus 219 ~dma~LMke~d--~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~----l~~~~~~~~~~~i 290 (318)
T COG3980 219 NDMAELMKEAD--LAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYH----LKDLAKDYEILQI 290 (318)
T ss_pred hhHHHHHHhcc--hheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCC----CchHHHHHHHHHh
Confidence 3467999999 89999885 999999999999999999999999999999 8988777655 6777777778888
Q ss_pred hcC
Q 012513 414 IQG 416 (462)
Q Consensus 414 l~~ 416 (462)
+.|
T Consensus 291 ~~d 293 (318)
T COG3980 291 QKD 293 (318)
T ss_pred hhC
Confidence 887
No 50
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.89 E-value=7.8e-07 Score=88.47 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=72.7
Q ss_pred eEeccCc-chhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhccc----ceeEEeeecCCcccC
Q 012513 328 LVVPSWS-PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDL----KVSFRVKVNENGLVG 402 (462)
Q Consensus 328 ~~~~~~~-pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~----g~G~~~~~~~~~~~~ 402 (462)
+.+..+. .-..++..++ ++|+-.|..| .|+...|+|+|++|...-|. |+...++ . |.++.+.. .+
T Consensus 281 ~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~-~~~l~g~~~~l~~-----~~ 350 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEA-QSRLLGGSVFLAS-----KN 350 (396)
T ss_pred eEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHh-hHhhcCCEEecCC-----CC
Confidence 4443443 3478999999 8999999766 99999999999999765665 8876555 3 65555543 35
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHH-HHHHHHHhhcCCCCChHHHHHHHH
Q 012513 403 REDIANYAKGLIQGEEGKLLRKKMR-ALKDAAANALSPDGSSTKSLAQVA 451 (462)
Q Consensus 403 ~~~l~~ai~~vl~~~~~~~~r~~a~-~l~~~~~~~~~~~g~~~~~~~~~~ 451 (462)
.+.|.+++.+++.|+ ..+++.. ..++.+ ..++++.+..+.+.
T Consensus 351 ~~~l~~~l~~ll~d~---~~~~~~~~~~~~~l----g~~~a~~~ia~~i~ 393 (396)
T TIGR03492 351 PEQAAQVVRQLLADP---ELLERCRRNGQERM----GPPGASARIAESIL 393 (396)
T ss_pred HHHHHHHHHHHHcCH---HHHHHHHHHHHHhc----CCCCHHHHHHHHHH
Confidence 599999999999884 4444443 222222 24565555544443
No 51
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.87 E-value=6.3e-06 Score=82.85 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=73.4
Q ss_pred CceEeccCcchh---hhhccccccccccccCc------hhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeec
Q 012513 326 VGLVVPSWSPQV---QVLRHGSTGGFLSHCGW------NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN 396 (462)
Q Consensus 326 ~~~~~~~~~pq~---~lL~~~~~~~~I~HGG~------~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~ 396 (462)
.++.+.+|+|++ .++..+++.++.+..+. +.+.|++++|+|+|+....+.. ....+. +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-
Confidence 368888999875 46778886444444332 2468999999999998754321 111222 45666643
Q ss_pred CCcccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCCcc
Q 012513 397 ENGLVGREDIANYAKGLIQGEE-GKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKNPEIE 460 (462)
Q Consensus 397 ~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ 460 (462)
-+.++++++|.++++|++ ...+++++++..+ +.-+.....+++++.+++...+
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~-------~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKLGTVAREYAE-------RTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-------HHcCHHHHHHHHHHHHHHHhcC
Confidence 368899999999998752 3344444444332 2334556666666666655443
No 52
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.85 E-value=1.1e-05 Score=78.29 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=60.4
Q ss_pred CCceEeccCcch---hhhhccccccccc----cccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecC
Q 012513 325 GVGLVVPSWSPQ---VQVLRHGSTGGFL----SHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 397 (462)
Q Consensus 325 ~~~~~~~~~~pq---~~lL~~~~~~~~I----~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~ 397 (462)
.+++.+.+++++ ..++..++ ++| .-|..+++.||+++|+|+|+.+. ......+.. -+.|..+..
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~-~~~g~~~~~-- 325 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVED-GETGLLVPP-- 325 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcC-CcceEEeCC--
Confidence 457888899975 45677788 455 23556799999999999998765 345556665 567776653
Q ss_pred CcccCHHHHHHHHHHHhcCc
Q 012513 398 NGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 398 ~~~~~~~~l~~ai~~vl~~~ 417 (462)
-+.+++.++|.+++.++
T Consensus 326 ---~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 326 ---GDPEALAEAILRLLDDP 342 (374)
T ss_pred ---CCHHHHHHHHHHHHcCh
Confidence 35899999999999885
No 53
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.85 E-value=5.1e-06 Score=81.74 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=57.5
Q ss_pred CCceEeccCcchhh---hhccccccccccccC---------chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEE
Q 012513 325 GVGLVVPSWSPQVQ---VLRHGSTGGFLSHCG---------WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFR 392 (462)
Q Consensus 325 ~~~~~~~~~~pq~~---lL~~~~~~~~I~HGG---------~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~ 392 (462)
..++.+.+++|+.. ++..++ ++|.... -+++.||+++|+|+|+.+..+.+.. +.. .+.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~-~~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAAD--VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEE-AGAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhC--eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hcc-CCcceE
Confidence 45788889998754 677788 4553211 3447999999999999987765443 233 356666
Q ss_pred eeecCCcccCHHHHHHHHHHHhcCc
Q 012513 393 VKVNENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 393 ~~~~~~~~~~~~~l~~ai~~vl~~~ 417 (462)
+.. -+.++++++|.+++.|+
T Consensus 347 ~~~-----~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 347 VPP-----GDPEALAAAILELLDDP 366 (394)
T ss_pred eCC-----CCHHHHHHHHHHHHhCh
Confidence 543 36899999999999875
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.82 E-value=1.5e-05 Score=77.38 Aligned_cols=80 Identities=19% Similarity=0.128 Sum_probs=56.9
Q ss_pred CceEeccCcch-hhhhccccccccccc----cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcc
Q 012513 326 VGLVVPSWSPQ-VQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 400 (462)
Q Consensus 326 ~~~~~~~~~pq-~~lL~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~ 400 (462)
.++...++..+ ..++..++ ++|.- |-.++++||+++|+|+|+.+.. .+...+.+ -+.|..+..
T Consensus 246 ~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~-~~~g~~~~~----- 313 (359)
T cd03808 246 GRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVID-GVNGFLVPP----- 313 (359)
T ss_pred ceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhhhc-CcceEEECC-----
Confidence 46666666443 67888888 55543 2367899999999999986544 34455555 567766543
Q ss_pred cCHHHHHHHHHHHhcCc
Q 012513 401 VGREDIANYAKGLIQGE 417 (462)
Q Consensus 401 ~~~~~l~~ai~~vl~~~ 417 (462)
-+.+++.+++.+++.++
T Consensus 314 ~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 314 GDAEALADAIERLIEDP 330 (359)
T ss_pred CCHHHHHHHHHHHHhCH
Confidence 36899999999999885
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.80 E-value=1.3e-05 Score=80.63 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=60.9
Q ss_pred ceE-eccCcchh---hhhcccccccccc-c------cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeee
Q 012513 327 GLV-VPSWSPQV---QVLRHGSTGGFLS-H------CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKV 395 (462)
Q Consensus 327 ~~~-~~~~~pq~---~lL~~~~~~~~I~-H------GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~ 395 (462)
+++ +.+|+|.+ .+|..++ ++|. + |--++++||+++|+|+|+.... .....+++ -+.|..+.
T Consensus 295 ~~~~~~g~~~~~~~~~~l~~aD--v~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~-~~~G~lv~- 366 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLLASAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKH-GENGLVFG- 366 (415)
T ss_pred cEEEEcCcCCHHHHHHHHHhCC--EEEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcC-CCCEEEEC-
Confidence 444 34688864 4577888 4542 1 1245799999999999986543 44456666 56787762
Q ss_pred cCCcccCHHHHHHHHHHHhcC---ch-HHHHHHHHHHHH
Q 012513 396 NENGLVGREDIANYAKGLIQG---EE-GKLLRKKMRALK 430 (462)
Q Consensus 396 ~~~~~~~~~~l~~ai~~vl~~---~~-~~~~r~~a~~l~ 430 (462)
+.++++++|.++++| ++ ...+++++++..
T Consensus 367 ------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 ------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred ------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 578999999999998 42 445555555544
No 56
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.79 E-value=2.5e-06 Score=86.17 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=68.1
Q ss_pred hhhhcccccccccc----ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHH
Q 012513 337 VQVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKG 412 (462)
Q Consensus 337 ~~lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~ 412 (462)
..++..+++ +|+. -||..+++||+++|+|+|+-|..+++......+.+ .|.++.. -+.+++++++.+
T Consensus 314 ~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~-------~d~~~La~~l~~ 384 (425)
T PRK05749 314 GLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQV-------EDAEDLAKAVTY 384 (425)
T ss_pred HHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEE-------CCHHHHHHHHHH
Confidence 567788884 2442 13444699999999999999998888887777766 5766553 367899999999
Q ss_pred HhcCch-HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 012513 413 LIQGEE-GKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWK 455 (462)
Q Consensus 413 vl~~~~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 455 (462)
+++|++ ...+.++++++.+. ..|..++.++.+.+.|+
T Consensus 385 ll~~~~~~~~m~~~a~~~~~~------~~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 385 LLTDPDARQAYGEAGVAFLKQ------NQGALQRTLQLLEPYLP 422 (425)
T ss_pred HhcCHHHHHHHHHHHHHHHHh------CccHHHHHHHHHHHhcc
Confidence 999852 22344444333221 23555555555544443
No 57
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.77 E-value=5.4e-06 Score=81.14 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=63.6
Q ss_pred CCceEeccCcchhh---hhcccccccccc----ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecC
Q 012513 325 GVGLVVPSWSPQVQ---VLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 397 (462)
Q Consensus 325 ~~~~~~~~~~pq~~---lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~ 397 (462)
.+++...+++|+.+ ++..++ ++|. .|..+++.||+++|+|+|+... ...+..+.+ .+.|..+...+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad--~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~-~~~g~~~~~~~ 330 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAAD--LFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVAD-GENGFLFPPGD 330 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcC--EEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheec-CceeEEeCCCC
Confidence 35788889999754 577888 4552 2345789999999999998654 345556666 57788776443
Q ss_pred CcccCHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Q 012513 398 NGLVGREDIANYAKGLIQGEE-GKLLRKKMRALK 430 (462)
Q Consensus 398 ~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~ 430 (462)
. ++.+++.+++++++ ...+++++++..
T Consensus 331 -----~-~~~~~i~~l~~~~~~~~~~~~~~~~~~ 358 (374)
T cd03817 331 -----E-ALAEALLRLLQDPELRRRLSKNAEESA 358 (374)
T ss_pred -----H-HHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2 89999999998862 223444444433
No 58
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.73 E-value=1.8e-05 Score=78.15 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=61.6
Q ss_pred CceEeccCcch-hhhhccccccccc----cccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcc
Q 012513 326 VGLVVPSWSPQ-VQVLRHGSTGGFL----SHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 400 (462)
Q Consensus 326 ~~~~~~~~~pq-~~lL~~~~~~~~I----~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~ 400 (462)
+++...++.++ ..++..++ ++| .-|...++.||+++|+|+|+.... .....+.+ -..|..++.
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d--~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~-~~~G~~~~~----- 320 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIAD--LFLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKH-GETGFLVDV----- 320 (371)
T ss_pred ceEEEecCcccHHHHHHhcC--EEEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcC-CCceEEcCC-----
Confidence 45777777765 67788888 455 234456999999999999986543 44555555 456765543
Q ss_pred cCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 012513 401 VGREDIANYAKGLIQGEE-GKLLRKKMRAL 429 (462)
Q Consensus 401 ~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l 429 (462)
-+.+++.+++.+++++++ ...+++++++.
T Consensus 321 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 367899999999998752 22344444443
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.71 E-value=6e-05 Score=73.46 Aligned_cols=83 Identities=14% Similarity=0.039 Sum_probs=59.5
Q ss_pred CCceEeccCcchh---hhhccccccccc--cccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCc
Q 012513 325 GVGLVVPSWSPQV---QVLRHGSTGGFL--SHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 399 (462)
Q Consensus 325 ~~~~~~~~~~pq~---~lL~~~~~~~~I--~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~ 399 (462)
.+++.+.+++++. .++..+++-++. +-|..++++||+++|+|+|+-+.. .....+.. .+.|.....
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~g~~~~~---- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GENGLLVPP---- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-CcceeEECC----
Confidence 3578888999975 557778842222 235567899999999999986654 34445566 566666543
Q ss_pred ccCHHHHHHHHHHHhcCc
Q 012513 400 LVGREDIANYAKGLIQGE 417 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~~~ 417 (462)
-+.+++.+++.++++++
T Consensus 329 -~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 329 -GDPEALAEAILRLLADP 345 (377)
T ss_pred -CCHHHHHHHHHHHhcCc
Confidence 47889999999999985
No 60
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.70 E-value=4.7e-05 Score=75.80 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=61.5
Q ss_pred CCceEeccCcchh---hhhcccccccccc---ccC-chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecC
Q 012513 325 GVGLVVPSWSPQV---QVLRHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 397 (462)
Q Consensus 325 ~~~~~~~~~~pq~---~lL~~~~~~~~I~---HGG-~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~ 397 (462)
.+++.+.+++|+. .+|..++ +++. .-| ..+++||+++|+|+|+.-..+ ....+.. -+.|..+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad--~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~-~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSAR--ALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVD-GETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCe--EEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhcc-CCceEEeC---
Confidence 3578888999986 5677888 4542 122 358899999999999975433 3344555 45676653
Q ss_pred CcccCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 012513 398 NGLVGREDIANYAKGLIQGEE-GKLLRKKMRA 428 (462)
Q Consensus 398 ~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~ 428 (462)
.+.++++++|.+++++++ ...+++++++
T Consensus 349 ---~~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred ---CCHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 468899999999998862 3334444443
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.65 E-value=5.1e-05 Score=74.44 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=56.2
Q ss_pred ceEeccCcc-hh---hhhccccccccccc----cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCC
Q 012513 327 GLVVPSWSP-QV---QVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 398 (462)
Q Consensus 327 ~~~~~~~~p-q~---~lL~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~ 398 (462)
++...+|++ +. .++..++ ++|.- |..++++||+++|+|+|+.... .....+.+ -+.|..+..
T Consensus 245 ~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~-~~~g~~~~~--- 314 (365)
T cd03825 245 PVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDH-GVTGYLAKP--- 314 (365)
T ss_pred ceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeC-CCceEEeCC---
Confidence 577779998 43 5688888 56653 4457999999999999986543 22333444 346665542
Q ss_pred cccCHHHHHHHHHHHhcCc
Q 012513 399 GLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 399 ~~~~~~~l~~ai~~vl~~~ 417 (462)
.+.+++++++.++++++
T Consensus 315 --~~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 315 --GDPEDLAEGIEWLLADP 331 (365)
T ss_pred --CCHHHHHHHHHHHHhCH
Confidence 46889999999999885
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.65 E-value=7.4e-05 Score=72.09 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=54.9
Q ss_pred CceEeccCcc-hhhhhcccccccccccc----CchhHHHHHHhCCceeecccccchhhhhHHhhcccc-eeEEeeecCCc
Q 012513 326 VGLVVPSWSP-QVQVLRHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLK-VSFRVKVNENG 399 (462)
Q Consensus 326 ~~~~~~~~~p-q~~lL~~~~~~~~I~HG----G~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g-~G~~~~~~~~~ 399 (462)
+++...++.. -..++..++ ++|.-. ..++++||+++|+|+|+.+..+.+.. +.. -+ .|..++.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~-~~~~g~~~~~---- 303 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIE-DGVNGLLVPN---- 303 (348)
T ss_pred CeEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhc-cCcceEEeCC----
Confidence 4566666633 367888888 455432 25799999999999998765543332 223 34 6776653
Q ss_pred ccCHHHHHHHHHHHhcCc
Q 012513 400 LVGREDIANYAKGLIQGE 417 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~~~ 417 (462)
-+.++++++|.++++|+
T Consensus 304 -~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 304 -GDVEALAEALLRLMEDE 320 (348)
T ss_pred -CCHHHHHHHHHHHHcCH
Confidence 36789999999999985
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.60 E-value=4.4e-05 Score=74.67 Aligned_cols=131 Identities=13% Similarity=0.024 Sum_probs=81.5
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHH---hh-CCCceEec
Q 012513 256 VLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD---RT-KGVGLVVP 331 (462)
Q Consensus 256 ~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~-~~~~~~~~ 331 (462)
.+++..|++. ..+.+..++++++... .+-+.+.+... ..+.+.+ +. ..+++.+.
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~-~~~l~i~G~g~-------------------~~~~~~~~~~~~~~~~~V~~~ 249 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALP-DAPLVIVGEGP-------------------LEAELEALAAALGLLDRVRFL 249 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhcc-CcEEEEEeCCh-------------------hHHHHHHHHHhcCCcceEEEc
Confidence 6667778753 2334566777777776 33333332211 1112221 11 34588889
Q ss_pred cCcchh---hhhcccccccccc---ccCc-hhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHH
Q 012513 332 SWSPQV---QVLRHGSTGGFLS---HCGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGRE 404 (462)
Q Consensus 332 ~~~pq~---~lL~~~~~~~~I~---HGG~-~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~ 404 (462)
+|+|+. .++..+++-++-+ +.|+ .+++||+++|+|+|+....+....... . -+.|..... -+.+
T Consensus 250 g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~~~-----~d~~ 320 (357)
T cd03795 250 GRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVVPP-----GDPA 320 (357)
T ss_pred CCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEeCC-----CCHH
Confidence 999975 4677788533333 2343 479999999999999776655543322 2 356665542 3689
Q ss_pred HHHHHHHHHhcCc
Q 012513 405 DIANYAKGLIQGE 417 (462)
Q Consensus 405 ~l~~ai~~vl~~~ 417 (462)
+++++|.++++|+
T Consensus 321 ~~~~~i~~l~~~~ 333 (357)
T cd03795 321 ALAEAIRRLLEDP 333 (357)
T ss_pred HHHHHHHHHHHCH
Confidence 9999999999986
No 64
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.60 E-value=3.6e-06 Score=83.21 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=69.5
Q ss_pred CceEeccCcch---hhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccC
Q 012513 326 VGLVVPSWSPQ---VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVG 402 (462)
Q Consensus 326 ~~~~~~~~~pq---~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~ 402 (462)
+++.+.+.+++ ..++..++ ++|+-.|. .+.||+++|+|+|.++-.++++. +.. .|.+..+. -+
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~------~d 320 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSH--LILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG------TD 320 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCC--EEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC------CC
Confidence 46777666554 46677888 78887664 47999999999999976555553 223 46665542 47
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 012513 403 REDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQ 452 (462)
Q Consensus 403 ~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 452 (462)
+++|.+++.++++++ ..+++...-. .. ...++++.+.++.+.+
T Consensus 321 ~~~i~~ai~~ll~~~---~~~~~~~~~~---~~-~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 321 KENITKAAKRLLTDP---DEYKKMSNAS---NP-YGDGEASERIVEELLN 363 (365)
T ss_pred HHHHHHHHHHHHhCh---HHHHHhhhcC---CC-CcCchHHHHHHHHHHh
Confidence 899999999999874 5555443322 21 1245666665555544
No 65
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.54 E-value=6.7e-05 Score=72.52 Aligned_cols=345 Identities=14% Similarity=0.120 Sum_probs=184.4
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHhcC-CCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCchH
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRLVRQH-NFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVPIE 92 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 92 (462)
.+-+=--+.|-++-.++|.++|.++. ++.+++-+..... .+..-+.+++.+....+|-+ .+
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg--------~e~a~~~~~~~v~h~YlP~D----~~------ 112 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTG--------AERAAALFGDSVIHQYLPLD----LP------ 112 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccH--------HHHHHHHcCCCeEEEecCcC----ch------
Confidence 45555568899999999999998764 6677765532211 22222334444555555531 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccEEE-eCCCcchHH-HHHHHcCCccccccCCCCCCccCCCCCcCCCCCCCCch
Q 012513 93 TRIILTLVRSLSSLRDALKVLTESTRLVALV-VDCFGSAAF-DVANELDVKFNCEYRDMPEPVQLPGCVPVHGRDFIEPV 170 (462)
Q Consensus 93 ~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI-~D~~~~~~~-~vA~~lgI~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~ 170 (462)
..+++++...+||++| ++.-++... .-+++.|| |-+.- ...+
T Consensus 113 ---------------~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~---------------p~~Lv------NaRL 156 (419)
T COG1519 113 ---------------IAVRRFLRKWRPKLLIIMETELWPNLINELKRRGI---------------PLVLV------NARL 156 (419)
T ss_pred ---------------HHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCC---------------CEEEE------eeee
Confidence 1123333444899765 666555544 35667887 21100 0011
Q ss_pred hhhchHHHHHHHHHHHhh-ccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEeeccCcCCCCCCCCCCCcchhhcccC
Q 012513 171 QQRKNKAYRFLLSFRKQY-HLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVGPLIQTGSTNETNKRSPACLKWLD 249 (462)
Q Consensus 171 ~~r~~~~~~~~~~~~~~~-~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~wl~ 249 (462)
-+|....|..+-...+.+ ...+.++..+-.+-+.- ..++-+.+.-+|.+-..-.....+. .+...|-.
T Consensus 157 S~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf---------~~LGa~~v~v~GNlKfd~~~~~~~~--~~~~~~r~ 225 (419)
T COG1519 157 SDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRF---------RSLGAKPVVVTGNLKFDIEPPPQLA--AELAALRR 225 (419)
T ss_pred chhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHH---------HhcCCcceEEecceeecCCCChhhH--HHHHHHHH
Confidence 122222233333333332 22334444433322221 1114456888888755443222211 23333333
Q ss_pred CCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCC--CceEEEEeCCccc--cccccc--------ccccCCCCCCCCCCh
Q 012513 250 EQPSESVLFVCFGSGGTLSQEQLNELALGLEMSG--QRFLWVAKSPHEE--AANATY--------FSVQSMKDPLDFLPK 317 (462)
Q Consensus 250 ~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~--~~~i~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~lp~ 317 (462)
.-+....+.|.-+| .....+.+.++.+++.+.. ...||+-+.+..- +.+... +|.++ .|.
T Consensus 226 ~l~~~r~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~-------~~~ 297 (419)
T COG1519 226 QLGGHRPVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGD-------PPF 297 (419)
T ss_pred hcCCCCceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCC-------CCC
Confidence 22221256665566 4445566777777776654 4567776654431 000000 11110 000
Q ss_pred hHHHhhCCCceEeccCcch-hhhhccccc----cccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEE
Q 012513 318 GFLDRTKGVGLVVPSWSPQ-VQVLRHGST----GGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFR 392 (462)
Q Consensus 318 ~~~~~~~~~~~~~~~~~pq-~~lL~~~~~----~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~ 392 (462)
.+-++++.+-+-- ..++.-+++ |-|+-+||+| .+|++++|+|+|.=|+...|.+-+.++.+ .|+|+.
T Consensus 298 ------~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~-~ga~~~ 369 (419)
T COG1519 298 ------SDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQ-AGAGLQ 369 (419)
T ss_pred ------CCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHh-cCCeEE
Confidence 1113444343332 233333332 1245699987 68999999999999999999999999999 999999
Q ss_pred eeecCCcccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhc
Q 012513 393 VKVNENGLVGREDIANYAKGLIQGEE-GKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKN 456 (462)
Q Consensus 393 ~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 456 (462)
++ +.+.+.+++...++|++ ...|.+++..+-+..+ | ++++.++.|+.
T Consensus 370 v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~------g----al~r~l~~l~~ 417 (419)
T COG1519 370 VE-------DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR------G----ALARTLEALKP 417 (419)
T ss_pred EC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh------H----HHHHHHHHhhh
Confidence 86 36789999999888753 4455555555555444 2 35555555543
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.53 E-value=0.00013 Score=71.22 Aligned_cols=81 Identities=11% Similarity=0.011 Sum_probs=55.2
Q ss_pred CCceEeccCcchhh---hhccccccccccc--cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCc
Q 012513 325 GVGLVVPSWSPQVQ---VLRHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 399 (462)
Q Consensus 325 ~~~~~~~~~~pq~~---lL~~~~~~~~I~H--GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~ 399 (462)
.+++...+|+++++ ++..+++-++-++ |-.+++.||+++|+|+|+.+..+ ....+.. +.|....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~--~~~~~~~----- 329 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY--GCGWVVD----- 329 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc--CceEEeC-----
Confidence 35788889999644 4777884222222 23568999999999999976432 3333333 5665553
Q ss_pred ccCHHHHHHHHHHHhcCc
Q 012513 400 LVGREDIANYAKGLIQGE 417 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~~~ 417 (462)
-+.+++.++|.++++++
T Consensus 330 -~~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 330 -DDVDALAAALRRALELP 346 (375)
T ss_pred -CChHHHHHHHHHHHhCH
Confidence 24489999999999885
No 67
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.49 E-value=0.00016 Score=70.65 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=58.0
Q ss_pred CCceEeccCcchh---hhhcccccccccc----------ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeE
Q 012513 325 GVGLVVPSWSPQV---QVLRHGSTGGFLS----------HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSF 391 (462)
Q Consensus 325 ~~~~~~~~~~pq~---~lL~~~~~~~~I~----------HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~ 391 (462)
.+++.+.+++|+. .++..+++ +|. -|..++++||+++|+|+|+.+... ....+.. -..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~-~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVED-GETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhC-CCceE
Confidence 3578888999864 45667884 444 344579999999999999876532 3334555 44776
Q ss_pred EeeecCCcccCHHHHHHHHHHHhcCc
Q 012513 392 RVKVNENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 392 ~~~~~~~~~~~~~~l~~ai~~vl~~~ 417 (462)
.+.. -+.+++.++|.+++.++
T Consensus 308 ~~~~-----~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 308 LVPP-----GDPEALADAIERLLDDP 328 (355)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCH
Confidence 6642 37899999999999886
No 68
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.47 E-value=0.00034 Score=69.95 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=53.1
Q ss_pred CCceEeccCcch---hhhhcccccccccc---ccCc-hhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecC
Q 012513 325 GVGLVVPSWSPQ---VQVLRHGSTGGFLS---HCGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 397 (462)
Q Consensus 325 ~~~~~~~~~~pq---~~lL~~~~~~~~I~---HGG~-~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~ 397 (462)
++++...+|+|+ ..+++.++ ++|. +-|+ .+++||+++|+|+|+.+..+ ....+.+ |.+... .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad--~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~--~- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGH--IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLA--E- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--Cceeec--C-
Confidence 346777899986 45677788 4542 3344 49999999999999987653 2233434 333222 1
Q ss_pred CcccCHHHHHHHHHHHhcC
Q 012513 398 NGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 398 ~~~~~~~~l~~ai~~vl~~ 416 (462)
.+.+++++++.+++++
T Consensus 318 ---~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 318 ---PDVESIVRKLEEAISI 333 (398)
T ss_pred ---CCHHHHHHHHHHHHhC
Confidence 3678999999999986
No 69
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.45 E-value=0.00058 Score=74.31 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=60.8
Q ss_pred CceEeccCcchhh---hhcccc--cccccc----ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeec
Q 012513 326 VGLVVPSWSPQVQ---VLRHGS--TGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN 396 (462)
Q Consensus 326 ~~~~~~~~~pq~~---lL~~~~--~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~ 396 (462)
+.|...+++++.+ ++..++ ..+||. -|=..+++||+++|+|+|+....+ ....+.. -..|+.++.
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~-g~nGlLVdP- 621 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRV-LDNGLLVDP- 621 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhcc-CCcEEEECC-
Confidence 4566778888755 344441 125554 233469999999999999987543 2233444 356777653
Q ss_pred CCcccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 012513 397 ENGLVGREDIANYAKGLIQGEE-GKLLRKKMRAL 429 (462)
Q Consensus 397 ~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l 429 (462)
-+.++|+++|.++++|++ ...+.+++++.
T Consensus 622 ----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~ 651 (1050)
T TIGR02468 622 ----HDQQAIADALLKLVADKQLWAECRQNGLKN 651 (1050)
T ss_pred ----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 368899999999999863 34455554443
No 70
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.44 E-value=0.00018 Score=70.78 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=59.6
Q ss_pred CceEeccCcchhh---hhcccccccccc----------ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEE
Q 012513 326 VGLVVPSWSPQVQ---VLRHGSTGGFLS----------HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFR 392 (462)
Q Consensus 326 ~~~~~~~~~pq~~---lL~~~~~~~~I~----------HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~ 392 (462)
.++.+.+++|+++ ++..++ ++|. -|-.+++.||+++|+|+|+-+..+ +...+.+ -+.|..
T Consensus 245 ~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~-~~~g~~ 317 (367)
T cd05844 245 GRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVED-GETGLL 317 (367)
T ss_pred CeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheec-CCeeEE
Confidence 4677889998754 477888 4442 234679999999999999877643 5555666 577876
Q ss_pred eeecCCcccCHHHHHHHHHHHhcCc
Q 012513 393 VKVNENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 393 ~~~~~~~~~~~~~l~~ai~~vl~~~ 417 (462)
++. -+.+++.++|.++++|+
T Consensus 318 ~~~-----~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 318 VPE-----GDVAALAAALGRLLADP 337 (367)
T ss_pred ECC-----CCHHHHHHHHHHHHcCH
Confidence 653 36789999999999885
No 71
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.43 E-value=0.00078 Score=68.32 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=56.3
Q ss_pred CceEeccCcchhhh---hccc----cccccccc----cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEee
Q 012513 326 VGLVVPSWSPQVQV---LRHG----STGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK 394 (462)
Q Consensus 326 ~~~~~~~~~pq~~l---L~~~----~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~ 394 (462)
+++...++++++++ +..+ + +||.- |=..+++||+++|+|+|+....+ ....+.+ -..|..++
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~D--v~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~-~~~G~lv~ 389 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRG--IFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIAN-CRNGLLVD 389 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCC--EEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcC-CCcEEEeC
Confidence 45667788887655 5544 5 66653 33469999999999999886543 3344445 45677665
Q ss_pred ecCCcccCHHHHHHHHHHHhcCc
Q 012513 395 VNENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 395 ~~~~~~~~~~~l~~ai~~vl~~~ 417 (462)
. -+.++++++|.++++|+
T Consensus 390 ~-----~d~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 390 V-----LDLEAIASALEDALSDS 407 (439)
T ss_pred C-----CCHHHHHHHHHHHHhCH
Confidence 3 36889999999999885
No 72
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.41 E-value=0.0004 Score=67.88 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=54.9
Q ss_pred CceEecc-Ccch---hhhhccccccccc--c--c--cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeee
Q 012513 326 VGLVVPS-WSPQ---VQVLRHGSTGGFL--S--H--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKV 395 (462)
Q Consensus 326 ~~~~~~~-~~pq---~~lL~~~~~~~~I--~--H--GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~ 395 (462)
+++...+ |+|+ ..++..++ ++| + . |-.++++||+++|+|+|+.+..+ ...+.. -+.|..+..
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad--~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAAD--VVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcC--EEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEcC
Confidence 4565554 4886 45677788 454 2 2 44568999999999999987654 233444 466766543
Q ss_pred cCCcccCHHHHHHHHHHHhcCc
Q 012513 396 NENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 396 ~~~~~~~~~~l~~ai~~vl~~~ 417 (462)
-+.+++++++.++++++
T Consensus 319 -----~d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 319 -----GDPAALAEAIRRLLADP 335 (366)
T ss_pred -----CCHHHHHHHHHHHHcCh
Confidence 35889999999999884
No 73
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.36 E-value=2.3e-05 Score=77.30 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=82.6
Q ss_pred CeEEEEEeCCCCCC-CHHHHHHHHHHHHhCCCc-eEEEEeCCcccccccccccccCCCCCCCCCChhHHH---hhC--CC
Q 012513 254 ESVLFVCFGSGGTL-SQEQLNELALGLEMSGQR-FLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD---RTK--GV 326 (462)
Q Consensus 254 ~~~v~vs~Gs~~~~-~~~~~~~i~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~--~~ 326 (462)
++.|.+++|..... ..+.+..++++++..... +.+....+.. .-+.+.+ +.. .+
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~-------------------~~~~l~~~~~~~~~~~~ 258 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR-------------------TRPRIREAGLEFLGHHP 258 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC-------------------hHHHHHHHHHhhccCCC
Confidence 44788888875433 456677888888776443 4444433211 0112222 221 35
Q ss_pred ceEeccCcch---hhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCH
Q 012513 327 GLVVPSWSPQ---VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGR 403 (462)
Q Consensus 327 ~~~~~~~~pq---~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~ 403 (462)
++.+.+..++ ..++..++ +||+-.| |.+.||+++|+|+|+++-. |. +..+.+ .|++..+. -+.
T Consensus 259 ~v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~------~~~ 324 (363)
T cd03786 259 NVLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVG------TDP 324 (363)
T ss_pred CEEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecC------CCH
Confidence 6766665554 35677788 8999998 7788999999999998743 22 223333 46554442 257
Q ss_pred HHHHHHHHHHhcCc
Q 012513 404 EDIANYAKGLIQGE 417 (462)
Q Consensus 404 ~~l~~ai~~vl~~~ 417 (462)
++|.+++.++++++
T Consensus 325 ~~i~~~i~~ll~~~ 338 (363)
T cd03786 325 EAILAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHHHHhcCc
Confidence 89999999999874
No 74
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.33 E-value=0.00029 Score=67.98 Aligned_cols=82 Identities=17% Similarity=0.087 Sum_probs=54.6
Q ss_pred CceEeccCcch-hhhhccccccccccc--cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccC
Q 012513 326 VGLVVPSWSPQ-VQVLRHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVG 402 (462)
Q Consensus 326 ~~~~~~~~~pq-~~lL~~~~~~~~I~H--GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~ 402 (462)
+++...++.+. ..++..+++-++-++ |..++++||+++|+|+|+.... .....+.+ -+.|...+.. +
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~~-----~ 315 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILED-GENGLLVPVG-----D 315 (353)
T ss_pred ccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcC-CCceEEECCC-----C
Confidence 46777777665 578888884222222 4456899999999999986544 45566677 6778776543 5
Q ss_pred HHHH---HHHHHHHhcCc
Q 012513 403 REDI---ANYAKGLIQGE 417 (462)
Q Consensus 403 ~~~l---~~ai~~vl~~~ 417 (462)
.+.+ .+++.....++
T Consensus 316 ~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 316 EAALAAAALALLDLLLDP 333 (353)
T ss_pred HHHHHHHHHHHHhccCCh
Confidence 5666 56666666664
No 75
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.32 E-value=0.0012 Score=66.00 Aligned_cols=91 Identities=14% Similarity=0.030 Sum_probs=62.8
Q ss_pred CceEeccCcchh---hhhcccccccccc---c-cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCC
Q 012513 326 VGLVVPSWSPQV---QVLRHGSTGGFLS---H-CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 398 (462)
Q Consensus 326 ~~~~~~~~~pq~---~lL~~~~~~~~I~---H-GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~ 398 (462)
+++.+.+++|+. .+|..++ ++|. + |...+++||+++|+|+|+.... .....+.+ -+.|..++.
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~--- 352 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVAD-GETGLLVDG--- 352 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhcc-CCceEECCC---
Confidence 468888999874 5688888 5552 2 3345899999999999986654 33445555 466776643
Q ss_pred cccCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 012513 399 GLVGREDIANYAKGLIQGEE-GKLLRKKMRA 428 (462)
Q Consensus 399 ~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~ 428 (462)
-+.++++++|.+++++++ ...+++++++
T Consensus 353 --~d~~~la~~i~~~l~~~~~~~~~~~~~~~ 381 (405)
T TIGR03449 353 --HDPADWADALARLLDDPRTRIRMGAAAVE 381 (405)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 367899999999998752 2334444443
No 76
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.31 E-value=0.00053 Score=66.40 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=76.1
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhh--CCCceEeccC
Q 012513 256 VLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT--KGVGLVVPSW 333 (462)
Q Consensus 256 ~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~~ 333 (462)
.+.+..|... ..+....+++++++.+.++++ ++.... ........+.. ..+++...++
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i-~G~~~~-----------------~~~~~~~~~~~~~~~~~v~~~G~ 231 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKL-AGPVSD-----------------PDYFYREIAPELLDGPDIEYLGE 231 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEE-EeCCCC-----------------HHHHHHHHHHhcccCCcEEEeCC
Confidence 3444557652 223355677788777766554 443211 00001111111 1467888899
Q ss_pred cchh---hhhcccccccccc--ccC-chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHH
Q 012513 334 SPQV---QVLRHGSTGGFLS--HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIA 407 (462)
Q Consensus 334 ~pq~---~lL~~~~~~~~I~--HGG-~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~ 407 (462)
+++. .+++.+++-++-+ +-| ..+++||+++|+|+|+.... .....+.. -..|..++ ..+++.
T Consensus 232 ~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~-~~~g~l~~-------~~~~l~ 299 (335)
T cd03802 232 VGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVED-GVTGFLVD-------SVEELA 299 (335)
T ss_pred CCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeC-CCcEEEeC-------CHHHHH
Confidence 9985 4577888533323 234 45899999999999987654 23334444 33566553 288999
Q ss_pred HHHHHHhcC
Q 012513 408 NYAKGLIQG 416 (462)
Q Consensus 408 ~ai~~vl~~ 416 (462)
+++.++...
T Consensus 300 ~~l~~l~~~ 308 (335)
T cd03802 300 AAVARADRL 308 (335)
T ss_pred HHHHHHhcc
Confidence 999998754
No 77
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.27 E-value=0.0014 Score=64.02 Aligned_cols=95 Identities=12% Similarity=-0.049 Sum_probs=61.0
Q ss_pred CceEeccCcch-hhhhcccccccccc--ccC-chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCccc
Q 012513 326 VGLVVPSWSPQ-VQVLRHGSTGGFLS--HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 401 (462)
Q Consensus 326 ~~~~~~~~~pq-~~lL~~~~~~~~I~--HGG-~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~ 401 (462)
+++.+.+|.+. ..+|..+++-++-+ +-| .++++||+++|+|+|+.... .....+.. -+.|..++. -
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~-----~ 315 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRP-GETGLLVPP-----G 315 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhC-CCceEEeCC-----C
Confidence 46777788543 67788888533333 223 46999999999999987543 33445555 457777653 3
Q ss_pred CHHHHHHHHHHHhc-Cc-hHHHHHHHHHHHH
Q 012513 402 GREDIANYAKGLIQ-GE-EGKLLRKKMRALK 430 (462)
Q Consensus 402 ~~~~l~~ai~~vl~-~~-~~~~~r~~a~~l~ 430 (462)
+.+++.++|..++. ++ +...++++|++..
T Consensus 316 ~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 316 DAEALAQALDQILSLLPEGRAKMFAKARMCV 346 (355)
T ss_pred CHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 78899999976654 43 2334444554444
No 78
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.22 E-value=0.0024 Score=62.58 Aligned_cols=77 Identities=23% Similarity=0.265 Sum_probs=48.9
Q ss_pred CCceEeccCcchhh---hhcccccccccccc----C-chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeec
Q 012513 325 GVGLVVPSWSPQVQ---VLRHGSTGGFLSHC----G-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN 396 (462)
Q Consensus 325 ~~~~~~~~~~pq~~---lL~~~~~~~~I~HG----G-~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~ 396 (462)
.+++.+.+++|+.+ .+..++ +++-+. | .++++||+++|+|+|+....+.. ..+.. .|.....
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad--~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~----e~~~~---~g~~~~~- 316 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAA--LFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNR----EVLGD---KAIYFKV- 316 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCC--EEEeCCccCCCCChHHHHHHHcCCCEEEecCCccc----eeecC---CeeEecC-
Confidence 45788889999865 455566 444433 2 25799999999999987654321 11222 2222221
Q ss_pred CCcccCHHHHHHHHHHHhcCc
Q 012513 397 ENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 397 ~~~~~~~~~l~~ai~~vl~~~ 417 (462)
.+.+++++.++++++
T Consensus 317 ------~~~l~~~i~~l~~~~ 331 (363)
T cd04955 317 ------GDDLASLLEELEADP 331 (363)
T ss_pred ------chHHHHHHHHHHhCH
Confidence 122999999999884
No 79
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.21 E-value=0.0042 Score=60.28 Aligned_cols=77 Identities=22% Similarity=0.225 Sum_probs=51.9
Q ss_pred ceEeccCcc-hhhhhcccccccccccc----CchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCccc
Q 012513 327 GLVVPSWSP-QVQVLRHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 401 (462)
Q Consensus 327 ~~~~~~~~p-q~~lL~~~~~~~~I~HG----G~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~ 401 (462)
++...+... -..++..++ ++|..+ ..+++.||+++|+|+|+.... .+...+.+ .|..+.. -
T Consensus 252 ~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~---~g~~~~~-----~ 317 (365)
T cd03807 252 KVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD---TGFLVPP-----G 317 (365)
T ss_pred eEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc---CCEEeCC-----C
Confidence 455545433 367888888 566543 347999999999999985543 33344444 3444432 3
Q ss_pred CHHHHHHHHHHHhcCc
Q 012513 402 GREDIANYAKGLIQGE 417 (462)
Q Consensus 402 ~~~~l~~ai~~vl~~~ 417 (462)
+.+++.+++.++++++
T Consensus 318 ~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 318 DPEALAEAIEALLADP 333 (365)
T ss_pred CHHHHHHHHHHHHhCh
Confidence 6889999999999885
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.19 E-value=0.00071 Score=66.16 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=58.7
Q ss_pred CceEeccCcch-hhhhccccccccccc--cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccC
Q 012513 326 VGLVVPSWSPQ-VQVLRHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVG 402 (462)
Q Consensus 326 ~~~~~~~~~pq-~~lL~~~~~~~~I~H--GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~ 402 (462)
+++...++..+ ..+|..+++-++=++ |..++++||+++|+|+|+. |...+...+++ .|..+ .. -+
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~~--~~-----~~ 312 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLIV--PI-----SD 312 (360)
T ss_pred CcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceEe--CC-----CC
Confidence 46777776654 678888884222222 3357899999999999974 44445555555 44433 22 37
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 012513 403 REDIANYAKGLIQGEEGKLLRKKMRALKDAAA 434 (462)
Q Consensus 403 ~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~ 434 (462)
.+++++++.++++++ +.+++...+-++.+.
T Consensus 313 ~~~~~~~i~~ll~~~--~~~~~~~~~~~~~~~ 342 (360)
T cd04951 313 PEALANKIDEILKMS--GEERDIIGARRERIV 342 (360)
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHHHHHHH
Confidence 889999999998543 244444433333333
No 81
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.17 E-value=0.0029 Score=61.04 Aligned_cols=126 Identities=13% Similarity=0.192 Sum_probs=73.1
Q ss_pred CeEEEEEeCCC----CCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceE
Q 012513 254 ESVLFVCFGSG----GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLV 329 (462)
Q Consensus 254 ~~~v~vs~Gs~----~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 329 (462)
++.|++-+-+. .....+.+.++++.|++.+..+|...+...+ ++ ..++.+ -.+
T Consensus 179 ~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~--------------------~~-~~~~~~--~~i 235 (335)
T PF04007_consen 179 EPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ--------------------RE-LFEKYG--VII 235 (335)
T ss_pred CCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch--------------------hh-HHhccC--ccc
Confidence 35777777663 2224456778999999988873333322111 11 111111 122
Q ss_pred eccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHH
Q 012513 330 VPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANY 409 (462)
Q Consensus 330 ~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~a 409 (462)
...-+.-.++|.+++ ++|+-|| -...||..-|+|.|-+ +.++-..+-..+.+ .|.-.+ . .+.+++.+.
T Consensus 236 ~~~~vd~~~Ll~~a~--l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~-~Gll~~---~----~~~~ei~~~ 303 (335)
T PF04007_consen 236 PPEPVDGLDLLYYAD--LVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIE-KGLLYH---S----TDPDEIVEY 303 (335)
T ss_pred cCCCCCHHHHHHhcC--EEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHH-CCCeEe---c----CCHHHHHHH
Confidence 234455568999999 8999887 5778999999999975 22232222333455 565222 2 467777776
Q ss_pred HHHHh
Q 012513 410 AKGLI 414 (462)
Q Consensus 410 i~~vl 414 (462)
+.+.+
T Consensus 304 v~~~~ 308 (335)
T PF04007_consen 304 VRKNL 308 (335)
T ss_pred HHHhh
Confidence 65554
No 82
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.10 E-value=0.00015 Score=71.45 Aligned_cols=129 Identities=14% Similarity=0.193 Sum_probs=78.0
Q ss_pred eEEEEEeCCC---CCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhC-CCceEe
Q 012513 255 SVLFVCFGSG---GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK-GVGLVV 330 (462)
Q Consensus 255 ~~v~vs~Gs~---~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~ 330 (462)
+.|+|++=.. .....+.+.++++++...+.++++.+..... ....+-+.+.+... .+++.+
T Consensus 202 ~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p---------------~~~~i~~~i~~~~~~~~~v~l 266 (365)
T TIGR03568 202 PYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA---------------GSRIINEAIEEYVNEHPNFRL 266 (365)
T ss_pred CEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC---------------CchHHHHHHHHHhcCCCCEEE
Confidence 5777888543 2344677999999998887666666543211 00001111111111 346777
Q ss_pred ccCcc---hhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEee-ecCCcccCHHHH
Q 012513 331 PSWSP---QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK-VNENGLVGREDI 406 (462)
Q Consensus 331 ~~~~p---q~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~-~~~~~~~~~~~l 406 (462)
.+-++ ...++.+++ ++|+.++.+- .||.+.|+|+|.+- +.+ +- ...|..+- .. .++++|
T Consensus 267 ~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~------e~-~~~g~nvl~vg----~~~~~I 329 (365)
T TIGR03568 267 FKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQ------KG-RLRADSVIDVD----PDKEEI 329 (365)
T ss_pred ECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCc------hh-hhhcCeEEEeC----CCHHHH
Confidence 65544 567888999 8998885544 99999999999774 211 21 22232211 22 678999
Q ss_pred HHHHHHHhc
Q 012513 407 ANYAKGLIQ 415 (462)
Q Consensus 407 ~~ai~~vl~ 415 (462)
.+++.++++
T Consensus 330 ~~a~~~~~~ 338 (365)
T TIGR03568 330 VKAIEKLLD 338 (365)
T ss_pred HHHHHHHhC
Confidence 999999653
No 83
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.10 E-value=0.0034 Score=62.72 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=56.8
Q ss_pred CCceEeccCcch-hhhhccccccccc--cc--cCc-hhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCC
Q 012513 325 GVGLVVPSWSPQ-VQVLRHGSTGGFL--SH--CGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 398 (462)
Q Consensus 325 ~~~~~~~~~~pq-~~lL~~~~~~~~I--~H--GG~-~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~ 398 (462)
.+++.+.+++++ ..++..+++ +| ++ .|. +.++||+++|+|+|+.+...+.. ... -|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC----
Confidence 457888899886 567888884 54 32 354 46999999999999988643321 122 35666654
Q ss_pred cccCHHHHHHHHHHHhcCc
Q 012513 399 GLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 399 ~~~~~~~l~~ai~~vl~~~ 417 (462)
-+.++++++|.++++|+
T Consensus 347 --~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 347 --ADPADFAAAILALLANP 363 (397)
T ss_pred --CCHHHHHHHHHHHHcCH
Confidence 36899999999999885
No 84
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.04 E-value=1.6e-05 Score=64.92 Aligned_cols=115 Identities=22% Similarity=0.246 Sum_probs=75.6
Q ss_pred eEEEEEeCCCCCCCHHH-----HHHHHHHHHhCCC-ceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCce
Q 012513 255 SVLFVCFGSGGTLSQEQ-----LNELALGLEMSGQ-RFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGL 328 (462)
Q Consensus 255 ~~v~vs~Gs~~~~~~~~-----~~~i~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 328 (462)
..+||+-||-.. +++ -++..+.|++.+. +.+..++.+.. | .++......+..++
T Consensus 4 ~~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-------~-----------~~d~~~~~~k~~gl 63 (170)
T KOG3349|consen 4 MTVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-------F-----------FGDPIDLIRKNGGL 63 (170)
T ss_pred eEEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-------C-----------CCCHHHhhcccCCe
Confidence 389999999532 222 2335666777776 67888887532 1 11111111122233
Q ss_pred E--eccCcch-hhhhccccccccccccCchhHHHHHHhCCceeecc----cccchhhhhHHhhcccceeEE
Q 012513 329 V--VPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWP----LYSEQKMNAVLLTDDLKVSFR 392 (462)
Q Consensus 329 ~--~~~~~pq-~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P----~~~DQ~~~a~rv~~~~g~G~~ 392 (462)
. .-+|.|- .+....++ ++|+|+|.||++|.|..|+|.|+++ +-.-|-.-|..+++ .|-=..
T Consensus 64 ~id~y~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~ 131 (170)
T KOG3349|consen 64 TIDGYDFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYY 131 (170)
T ss_pred EEEEEecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEE
Confidence 3 3466775 55566688 9999999999999999999999999 33357788888888 565443
No 85
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.02 E-value=0.0036 Score=61.20 Aligned_cols=79 Identities=20% Similarity=0.119 Sum_probs=54.2
Q ss_pred CceEeccCcch-hhhhcccccccccc----ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcc
Q 012513 326 VGLVVPSWSPQ-VQVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 400 (462)
Q Consensus 326 ~~~~~~~~~pq-~~lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~ 400 (462)
+++...++..+ ..++..+++ +|. -|-.++++||+++|+|+|+....+- ...+.. +.|.... .
T Consensus 249 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~~--~~~~~~~-~---- 315 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLTD--LVKFLSL-D---- 315 (358)
T ss_pred CcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhcc--CccEEeC-C----
Confidence 46767776444 678888884 443 2456799999999999998765543 223333 4444332 2
Q ss_pred cCHHHHHHHHHHHhcCc
Q 012513 401 VGREDIANYAKGLIQGE 417 (462)
Q Consensus 401 ~~~~~l~~ai~~vl~~~ 417 (462)
-++++++++|.++++|+
T Consensus 316 ~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 316 ESPEIWAEEILKLKSED 332 (358)
T ss_pred CCHHHHHHHHHHHHhCc
Confidence 35799999999999986
No 86
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.00 E-value=0.0096 Score=59.08 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=55.3
Q ss_pred ceE-eccCcch---hhhhcccccccccc----ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCC
Q 012513 327 GLV-VPSWSPQ---VQVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 398 (462)
Q Consensus 327 ~~~-~~~~~pq---~~lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~ 398 (462)
+++ +.+++++ ..++..++ ++|. -|...+++||+++|+|+|+.... .....++. -+.|..++..+.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~-~~~G~~~~~~~~ 333 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVD-GETGFLVPPDNS 333 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhC-CCceEEcCCCCC
Confidence 344 3467776 45577888 4553 23345789999999999987643 34555666 567887765430
Q ss_pred -cccCHHHHHHHHHHHhcCc
Q 012513 399 -GLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 399 -~~~~~~~l~~ai~~vl~~~ 417 (462)
..-..+++.++|.++++|+
T Consensus 334 ~~~~~~~~l~~~i~~l~~~~ 353 (388)
T TIGR02149 334 DADGFQAELAKAINILLADP 353 (388)
T ss_pred cccchHHHHHHHHHHHHhCH
Confidence 0011279999999999885
No 87
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.95 E-value=0.012 Score=59.47 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=52.6
Q ss_pred EeccCcchhhhhccccccccccc----cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHH
Q 012513 329 VVPSWSPQVQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGRE 404 (462)
Q Consensus 329 ~~~~~~pq~~lL~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~ 404 (462)
+..++.+.++++...+ +||.= |=.++++||+++|+|+|+.-..+. ..+.+ -+.|... -+.+
T Consensus 287 vf~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~-~~ng~~~-------~~~~ 351 (462)
T PLN02846 287 VYPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQ-FPNCRTY-------DDGK 351 (462)
T ss_pred EECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeec-CCceEec-------CCHH
Confidence 3557777778888888 67755 445799999999999999765432 33333 3444333 2578
Q ss_pred HHHHHHHHHhcCc
Q 012513 405 DIANYAKGLIQGE 417 (462)
Q Consensus 405 ~l~~ai~~vl~~~ 417 (462)
++.+++.+++.++
T Consensus 352 ~~a~ai~~~l~~~ 364 (462)
T PLN02846 352 GFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHccC
Confidence 9999999999864
No 88
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=0.0022 Score=61.72 Aligned_cols=350 Identities=17% Similarity=0.139 Sum_probs=178.6
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCC-CEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCch
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHN-FLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVPI 91 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~G-H~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 91 (462)
.-+++-++++-.+.=|..|.++|.+. + .+..++.+..... .......++-.. +.. |.....-...+.
T Consensus 4 ~Kv~~I~GTRPE~iKmapli~~~~~~-~~~~~~vi~TGQH~d----~em~~~~le~~~--i~~---pdy~L~i~~~~~-- 71 (383)
T COG0381 4 LKVLTIFGTRPEAIKMAPLVKALEKD-PDFELIVIHTGQHRD----YEMLDQVLELFG--IRK---PDYDLNIMKPGQ-- 71 (383)
T ss_pred eEEEEEEecCHHHHHHhHHHHHHHhC-CCCceEEEEeccccc----HHHHHHHHHHhC--CCC---CCcchhccccCC--
Confidence 34555678999999999999999776 6 7777777765441 124444443322 111 111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccEEE--eCCCcchH-HHHHHHcCCccccccCCCCCCccCCCCCcCCCCCCCC
Q 012513 92 ETRIILTLVRSLSSLRDALKVLTESTRLVALV--VDCFGSAA-FDVANELDVKFNCEYRDMPEPVQLPGCVPVHGRDFIE 168 (462)
Q Consensus 92 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI--~D~~~~~~-~~vA~~lgI~~~~~~~~~~~~~~~p~~~p~~~~~~~~ 168 (462)
.+..........+.+.+++. +||+|+ .|.....+ +.+|.++.|++.+.-. |+...... +|+
T Consensus 72 --tl~~~t~~~i~~~~~vl~~~----kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEA---------GlRt~~~~-~PE 135 (383)
T COG0381 72 --TLGEITGNIIEGLSKVLEEE----KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEA---------GLRTGDLY-FPE 135 (383)
T ss_pred --CHHHHHHHHHHHHHHHHHhh----CCCEEEEeCCcchHHHHHHHHHHhCCceEEEec---------ccccCCCC-CcH
Confidence 23445555566666666554 999877 56655544 5788889983332211 22111111 233
Q ss_pred chhhhchHHHHHHHHHHHhhccccEEEEcchhhhcchHHHHhhcccCCCCCCCeEeeccCcCCCC-----CCCCCCCcch
Q 012513 169 PVQQRKNKAYRFLLSFRKQYHLAAGIMVNSFMELETGPFKALMEGESSFNPPPVYPVGPLIQTGS-----TNETNKRSPA 243 (462)
Q Consensus 169 ~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~l~~~~~~~~~p~v~~vGpl~~~~~-----~~~~~~~~~~ 243 (462)
.+..+.. .....+. +.++ +...-..+++.. ...+++.+|-...+.- ..... ..
T Consensus 136 E~NR~l~-------~~~S~~h-----fapt----e~ar~nLl~EG~---~~~~IfvtGnt~iDal~~~~~~~~~~---~~ 193 (383)
T COG0381 136 EINRRLT-------SHLSDLH-----FAPT----EIARKNLLREGV---PEKRIFVTGNTVIDALLNTRDRVLED---SK 193 (383)
T ss_pred HHHHHHH-------HHhhhhh-----cCCh----HHHHHHHHHcCC---CccceEEeCChHHHHHHHHHhhhccc---hh
Confidence 2211111 1111110 0111 111112223321 1125777785332210 01000 11
Q ss_pred hhcc-cCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHH----HhCCCceEEEEeCCcccccccccccccCCCCCCCCCChh
Q 012513 244 CLKW-LDEQPSESVLFVCFGSGGTLSQEQLNELALGL----EMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKG 318 (462)
Q Consensus 244 ~~~w-l~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 318 (462)
...- +.. ..+..+.+|+=-..+.. +.+++|.+++ +.. ..+.+++.-... ..+-+-
T Consensus 194 ~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~-----------------~~v~e~ 253 (383)
T COG0381 194 ILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPR-----------------PRVREL 253 (383)
T ss_pred hHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCC-----------------hhhhHH
Confidence 1111 222 12347888764433333 3345555544 333 233343332211 001111
Q ss_pred HHHhhCCC-ceEe---ccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEee
Q 012513 319 FLDRTKGV-GLVV---PSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK 394 (462)
Q Consensus 319 ~~~~~~~~-~~~~---~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~ 394 (462)
..+++++. ++.+ .+|.+.-.++.++. +++|-.| |-.-||-..|+|++++=...++|. +++. |.-+.+.
T Consensus 254 ~~~~L~~~~~v~li~pl~~~~f~~L~~~a~--~iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lvg 325 (383)
T COG0381 254 VLKRLKNVERVKLIDPLGYLDFHNLMKNAF--LILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILVG 325 (383)
T ss_pred HHHHhCCCCcEEEeCCcchHHHHHHHHhce--EEEecCC-chhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEeC
Confidence 12334433 4554 46778899999998 8999887 456789999999999999999996 2222 4444443
Q ss_pred ecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 012513 395 VNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQR 453 (462)
Q Consensus 395 ~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 453 (462)
.+.+.|.+++.++++++ ...+|++....-.. .|.++.+.++.+.+.
T Consensus 326 ------~~~~~i~~~~~~ll~~~---~~~~~m~~~~npYg----dg~as~rIv~~l~~~ 371 (383)
T COG0381 326 ------TDEENILDAATELLEDE---EFYERMSNAKNPYG----DGNASERIVEILLNY 371 (383)
T ss_pred ------ccHHHHHHHHHHHhhCh---HHHHHHhcccCCCc----CcchHHHHHHHHHHH
Confidence 57799999999999985 66666555544333 233444444444433
No 89
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.90 E-value=0.054 Score=57.96 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=43.5
Q ss_pred chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHh----cCch-HHHHHHHHH
Q 012513 354 WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLI----QGEE-GKLLRKKMR 427 (462)
Q Consensus 354 ~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl----~~~~-~~~~r~~a~ 427 (462)
..+++||++||+|+|+.-..+ ....|.+ -..|..++.. ++++++++|.+++ .|++ +..+.++++
T Consensus 657 GLvvLEAMAcGlPVVAT~~GG----~~EiV~d-g~tGfLVdp~-----D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~ 725 (784)
T TIGR02470 657 GLTVLEAMTCGLPTFATRFGG----PLEIIQD-GVSGFHIDPY-----HGEEAAEKIVDFFEKCDEDPSYWQKISQGGL 725 (784)
T ss_pred CHHHHHHHHcCCCEEEcCCCC----HHHHhcC-CCcEEEeCCC-----CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 459999999999999866543 4445566 4568887643 6788899888875 4542 334444443
No 90
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.85 E-value=0.038 Score=54.57 Aligned_cols=79 Identities=19% Similarity=0.134 Sum_probs=55.1
Q ss_pred ceEeccCcc-hhhhhccccccccc--cc--cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCccc
Q 012513 327 GLVVPSWSP-QVQVLRHGSTGGFL--SH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 401 (462)
Q Consensus 327 ~~~~~~~~p-q~~lL~~~~~~~~I--~H--GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~ 401 (462)
++.+.++.. -..++..++ ++| ++ |-.++++||+++|+|+|+....+ +...+.. -..|..++. -
T Consensus 256 ~v~~~g~~~~~~~~~~~ad--i~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~-~~~g~~~~~-----~ 323 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALD--LFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQH-GVTGALVPP-----G 323 (374)
T ss_pred eEEEcCCcCCHHHHHHhcC--EEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcC-CCceEEeCC-----C
Confidence 455555443 367788888 455 33 44679999999999999977543 3444555 355766653 3
Q ss_pred CHHHHHHHHHHHhcCc
Q 012513 402 GREDIANYAKGLIQGE 417 (462)
Q Consensus 402 ~~~~l~~ai~~vl~~~ 417 (462)
+.++++++|.++++++
T Consensus 324 d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 324 DAVALARALQPYVSDP 339 (374)
T ss_pred CHHHHHHHHHHHHhCH
Confidence 6789999999999875
No 91
>PLN00142 sucrose synthase
Probab=97.79 E-value=0.035 Score=59.46 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=41.7
Q ss_pred cCch-hHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHH----hcCch-HHHHHHH
Q 012513 352 CGWN-SILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGL----IQGEE-GKLLRKK 425 (462)
Q Consensus 352 GG~~-t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~v----l~~~~-~~~~r~~ 425 (462)
-|+| +++||+++|+|+|+....+ ....|.. -..|..++.. +.++++++|.++ +.|++ +..+.++
T Consensus 677 EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~d-G~tG~LV~P~-----D~eaLA~aI~~lLekLl~Dp~lr~~mg~~ 746 (815)
T PLN00142 677 EAFGLTVVEAMTCGLPTFATCQGG----PAEIIVD-GVSGFHIDPY-----HGDEAANKIADFFEKCKEDPSYWNKISDA 746 (815)
T ss_pred cCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcC-CCcEEEeCCC-----CHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4444 8999999999999866543 4445555 3568777643 567777777654 46642 3344444
Q ss_pred H
Q 012513 426 M 426 (462)
Q Consensus 426 a 426 (462)
+
T Consensus 747 A 747 (815)
T PLN00142 747 G 747 (815)
T ss_pred H
Confidence 4
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.76 E-value=0.0052 Score=59.91 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=56.7
Q ss_pred CCceEeccCcchh---hhhcccccccccc--ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCc
Q 012513 325 GVGLVVPSWSPQV---QVLRHGSTGGFLS--HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 399 (462)
Q Consensus 325 ~~~~~~~~~~pq~---~lL~~~~~~~~I~--HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~ 399 (462)
.+++...+++|+. .++..+++-++-+ -|..+++.||+++|+|+|+....+ ....+.+ .|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~---- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDP---- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCC----
Confidence 4578888999875 5677788422221 234568999999999999865432 1222222 2333332
Q ss_pred ccCHHHHHHHHHHHhcCchHHHHHHHHHH
Q 012513 400 LVGREDIANYAKGLIQGEEGKLLRKKMRA 428 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~~~~~~~~r~~a~~ 428 (462)
-+.+++.++|.+++.|+ ..+.+..+
T Consensus 321 -~~~~~~~~~i~~l~~~~---~~~~~~~~ 345 (365)
T cd03809 321 -LDPEALAAAIERLLEDP---ALREELRE 345 (365)
T ss_pred -CCHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 36889999999999885 44444433
No 93
>PLN02275 transferase, transferring glycosyl groups
Probab=97.73 E-value=0.06 Score=53.29 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=51.8
Q ss_pred CceEe-ccCcchhhh---hcccccccccc-c-----cC-chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEee
Q 012513 326 VGLVV-PSWSPQVQV---LRHGSTGGFLS-H-----CG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK 394 (462)
Q Consensus 326 ~~~~~-~~~~pq~~l---L~~~~~~~~I~-H-----GG-~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~ 394 (462)
.|++. .+|+|++++ |..++ +||. + -| -++++||+++|+|+|+.... .....|++ -+.|..+.
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aD--v~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv~~-g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELVKD-GKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCC--EEEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHccC-CCCeEEEC
Confidence 34554 347888555 88899 5552 1 12 45899999999999997543 35556666 56788763
Q ss_pred ecCCcccCHHHHHHHHHHHh
Q 012513 395 VNENGLVGREDIANYAKGLI 414 (462)
Q Consensus 395 ~~~~~~~~~~~l~~ai~~vl 414 (462)
+.++++++|.+++
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 3688999988764
No 94
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.65 E-value=0.054 Score=55.39 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=48.6
Q ss_pred eccCcch--hhhhcccccccccc---ccCch-hHHHHHHhCCceeeccccc--chhhhhHHhhcccceeEEeeecCCccc
Q 012513 330 VPSWSPQ--VQVLRHGSTGGFLS---HCGWN-SILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLV 401 (462)
Q Consensus 330 ~~~~~pq--~~lL~~~~~~~~I~---HGG~~-t~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~g~G~~~~~~~~~~~ 401 (462)
..+|-.. ..++..++ +||. +-|+| +.+||+++|+|.|+....+ |.-.+...-.. -+.|..++. -
T Consensus 342 ~~g~~~~~~~~~~~~aD--v~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv~~-----~ 413 (466)
T PRK00654 342 QIGYDEALAHRIYAGAD--MFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVFDD-----F 413 (466)
T ss_pred EEeCCHHHHHHHHhhCC--EEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEeCC-----C
Confidence 3466322 25678888 5553 34444 8899999999999876543 21111100012 267777753 3
Q ss_pred CHHHHHHHHHHHhc
Q 012513 402 GREDIANYAKGLIQ 415 (462)
Q Consensus 402 ~~~~l~~ai~~vl~ 415 (462)
+++++.++|.+++.
T Consensus 414 d~~~la~~i~~~l~ 427 (466)
T PRK00654 414 NAEDLLRALRRALE 427 (466)
T ss_pred CHHHHHHHHHHHHH
Confidence 68899999999875
No 95
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.61 E-value=0.0011 Score=66.50 Aligned_cols=84 Identities=13% Similarity=0.171 Sum_probs=59.4
Q ss_pred CCceEeccCcchhhh---hcccccccccccc----CchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecC
Q 012513 325 GVGLVVPSWSPQVQV---LRHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 397 (462)
Q Consensus 325 ~~~~~~~~~~pq~~l---L~~~~~~~~I~HG----G~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~ 397 (462)
.+++...+|+++.++ +..+++.+||... -.++++||+++|+|+|+.... .....+.+ -+.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~-~~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDN-GGNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcC-CCcEEEeCCC-
Confidence 346778899998654 4433333665433 356899999999999986543 34556666 4578777543
Q ss_pred CcccCHHHHHHHHHHHhcCc
Q 012513 398 NGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 398 ~~~~~~~~l~~ai~~vl~~~ 417 (462)
-+.++++++|.++++|+
T Consensus 362 ---~~~~~la~~I~~ll~~~ 378 (407)
T cd04946 362 ---PTPNELVSSLSKFIDNE 378 (407)
T ss_pred ---CCHHHHHHHHHHHHhCH
Confidence 47899999999999875
No 96
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.61 E-value=0.012 Score=60.41 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=63.8
Q ss_pred hhhhccccccccccccCchhHHHHHHhCCceeecc-cccchhhhhHHhhccc-----c-----eeE----Eee--ecCCc
Q 012513 337 VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWP-LYSEQKMNAVLLTDDL-----K-----VSF----RVK--VNENG 399 (462)
Q Consensus 337 ~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P-~~~DQ~~~a~rv~~~~-----g-----~G~----~~~--~~~~~ 399 (462)
.+++..++ +.+.=.|. .|+|+..+|+|||++= ...=-+..++++.+ . + +|. ++- -+
T Consensus 483 ~~~m~aaD--~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvk-i~i~yIsLpNIIagr~VvPEllqgQ~--- 555 (608)
T PRK01021 483 YELMRECD--CALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFK-IILPAYSLPNIILGSTIFPEFIGGKK--- 555 (608)
T ss_pred HHHHHhcC--eeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHh-ccCCeeehhHHhcCCCcchhhcCCcc---
Confidence 57889999 67777775 5789999999999853 22122334555544 1 1 111 111 12
Q ss_pred ccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 012513 400 LVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVA 451 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 451 (462)
..|++.|++++ +++.|+ .+|++.++--+++++...+|-++-+++-.++
T Consensus 556 ~~tpe~La~~l-~lL~d~---~~r~~~~~~l~~lr~~Lg~~~~~~~~~~~~~ 603 (608)
T PRK01021 556 DFQPEEVAAAL-DILKTS---QSKEKQKDACRDLYQAMNESASTMKECLSLI 603 (608)
T ss_pred cCCHHHHHHHH-HHhcCH---HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 37899999997 778775 4555555555555555446666655555444
No 97
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.59 E-value=0.0028 Score=63.52 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=58.3
Q ss_pred CCceEeccCcchhh---hhcccccccccc--c-------cCc-hhHHHHHHhCCceeecccccchhhhhHHhhcccceeE
Q 012513 325 GVGLVVPSWSPQVQ---VLRHGSTGGFLS--H-------CGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSF 391 (462)
Q Consensus 325 ~~~~~~~~~~pq~~---lL~~~~~~~~I~--H-------GG~-~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~ 391 (462)
.+++.+.+|+|+.+ ++..++ +||. + -|. ++++||+++|+|+|+....+ ....+.+ -..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aD--v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~-~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDAD--VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEA-DKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcC-CCceE
Confidence 35688889999854 567788 4553 2 243 67899999999999876543 3344555 45677
Q ss_pred EeeecCCcccCHHHHHHHHHHHhc-Cc
Q 012513 392 RVKVNENGLVGREDIANYAKGLIQ-GE 417 (462)
Q Consensus 392 ~~~~~~~~~~~~~~l~~ai~~vl~-~~ 417 (462)
.++. -+.++++++|.++++ |+
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~ 372 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDT 372 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCH
Confidence 6653 368899999999998 75
No 98
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.58 E-value=0.001 Score=66.45 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=85.8
Q ss_pred CeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHh-----hCCCce
Q 012513 254 ESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDR-----TKGVGL 328 (462)
Q Consensus 254 ~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~~ 328 (462)
..++|.+|......+++.+..-.+-|++.+...+|....+.. -.+.+.++ +..+.+
T Consensus 284 d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-------------------~~~~l~~~~~~~Gv~~~Ri 344 (468)
T PF13844_consen 284 DAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-------------------GEARLRRRFAAHGVDPDRI 344 (468)
T ss_dssp SSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-------------------HHHHHHHHHHHTTS-GGGE
T ss_pred CceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-------------------HHHHHHHHHHHcCCChhhE
Confidence 459999999998899999888888889999999998775432 00122221 123456
Q ss_pred EeccCcchhhhh---ccccccccc---cccCchhHHHHHHhCCceeecccccchhhh-hHHhhcccceeEEeeecCCccc
Q 012513 329 VVPSWSPQVQVL---RHGSTGGFL---SHCGWNSILESIVHGVPIIAWPLYSEQKMN-AVLLTDDLKVSFRVKVNENGLV 401 (462)
Q Consensus 329 ~~~~~~pq~~lL---~~~~~~~~I---~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~-a~rv~~~~g~G~~~~~~~~~~~ 401 (462)
++.++.|+.+-| ..++ +++ ..+|..|++|||+.|||+|.+|--.=.-.. +..+.. +|+.-.+. .
T Consensus 345 ~f~~~~~~~ehl~~~~~~D--I~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA------~ 415 (468)
T PF13844_consen 345 IFSPVAPREEHLRRYQLAD--ICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA------D 415 (468)
T ss_dssp EEEE---HHHHHHHGGG-S--EEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-------S
T ss_pred EEcCCCCHHHHHHHhhhCC--EEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC------C
Confidence 677777765443 4456 343 467889999999999999999933212222 334445 66654333 3
Q ss_pred CHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhc
Q 012513 402 GREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKN 456 (462)
Q Consensus 402 ~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 456 (462)
+.++-.+..-++-+|. +..++--+++++.+.+ |.-.+.+.+.+++++
T Consensus 416 s~~eYv~~Av~La~D~--~~l~~lR~~Lr~~~~~------SpLfd~~~~ar~lE~ 462 (468)
T PF13844_consen 416 SEEEYVEIAVRLATDP--ERLRALRAKLRDRRSK------SPLFDPKRFARNLEA 462 (468)
T ss_dssp SHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHH------SGGG-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhh------CCCCCHHHHHHHHHH
Confidence 4555444444555564 2333333344444443 334445555555543
No 99
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.57 E-value=0.0031 Score=61.71 Aligned_cols=105 Identities=23% Similarity=0.212 Sum_probs=66.5
Q ss_pred chhhhhccccccccccccCchhHHHHHHhCCceeeccc-ccchhhhhHHhhcccce-eE--EeeecC------CcccCHH
Q 012513 335 PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL-YSEQKMNAVLLTDDLKV-SF--RVKVNE------NGLVGRE 404 (462)
Q Consensus 335 pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~-~~DQ~~~a~rv~~~~g~-G~--~~~~~~------~~~~~~~ 404 (462)
.-.++|..++ +.+.=.|. .|+|+...|+|||++=- ..=-+..|+++.+ ... |+ .+..++ ....|++
T Consensus 253 ~~~~~m~~ad--~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~ 328 (373)
T PF02684_consen 253 ESYDAMAAAD--AALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPE 328 (373)
T ss_pred chHHHHHhCc--chhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHH
Confidence 4466788888 55555554 68999999999998742 2233456666655 332 21 111111 1247999
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 012513 405 DIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKS 446 (462)
Q Consensus 405 ~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~ 446 (462)
.|.+++.+++.|+ ..++..+...+.+++....|.++..+
T Consensus 329 ~i~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 329 NIAAELLELLENP---EKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred HHHHHHHHHhcCH---HHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 9999999999985 44666666666666655556655543
No 100
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.53 E-value=0.00081 Score=65.88 Aligned_cols=127 Identities=12% Similarity=0.111 Sum_probs=81.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcch
Q 012513 257 LFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQ 336 (462)
Q Consensus 257 v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq 336 (462)
.++..|++. ..+....++++++..+.++++ ++.+.. .+.+.+ ...+++.+.+++|+
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~i-vG~g~~--------------------~~~l~~-~~~~~V~~~g~~~~ 252 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVV-IGDGPE--------------------LDRLRA-KAGPNVTFLGRVSD 252 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEE-EECChh--------------------HHHHHh-hcCCCEEEecCCCH
Confidence 345567753 234466778888887766444 343211 011222 23457888899998
Q ss_pred h---hhhccccccccccccCc-hhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHH
Q 012513 337 V---QVLRHGSTGGFLSHCGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKG 412 (462)
Q Consensus 337 ~---~lL~~~~~~~~I~HGG~-~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~ 412 (462)
+ .++..+++-++-+.-|+ .+++||+++|+|+|+....+ ....+.+ -+.|..+.. -+.++++++|.+
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~~-----~~~~~la~~i~~ 322 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFEE-----QTVESLAAAVER 322 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeCC-----CCHHHHHHHHHH
Confidence 4 56778885333334444 46789999999999986543 3334555 467777653 367889999999
Q ss_pred HhcCc
Q 012513 413 LIQGE 417 (462)
Q Consensus 413 vl~~~ 417 (462)
+++|+
T Consensus 323 l~~~~ 327 (351)
T cd03804 323 FEKNE 327 (351)
T ss_pred HHhCc
Confidence 99886
No 101
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.50 E-value=0.1 Score=52.56 Aligned_cols=79 Identities=13% Similarity=-0.016 Sum_probs=53.2
Q ss_pred CceEeccCcchh---hhhcccccccccc----ccCchhHHHHHHhCCceeecccccchhhhhHHhh---cccceeEEeee
Q 012513 326 VGLVVPSWSPQV---QVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLT---DDLKVSFRVKV 395 (462)
Q Consensus 326 ~~~~~~~~~pq~---~lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~---~~~g~G~~~~~ 395 (462)
++|...+++|++ .+|..++ ++|+ -+=..++.||+++|+|+|+.-..+.- ...+. . -..|...
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~-g~~G~l~-- 376 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDG-GPTGFLA-- 376 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCC-CCceEEe--
Confidence 578888999875 5667788 4442 12234889999999999987644321 11222 3 3466553
Q ss_pred cCCcccCHHHHHHHHHHHhcCc
Q 012513 396 NENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 396 ~~~~~~~~~~l~~ai~~vl~~~ 417 (462)
-+.+++++++.++++++
T Consensus 377 -----~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -----STAEEYAEAIEKILSLS 393 (419)
T ss_pred -----CCHHHHHHHHHHHHhCC
Confidence 26889999999999865
No 102
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.49 E-value=0.0015 Score=63.54 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=69.0
Q ss_pred hhhhhccccccccccccCchhHHHHHHhCCceeeccccc--chhhhhHHhh---cccceeEEeee----cC------Ccc
Q 012513 336 QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS--EQKMNAVLLT---DDLKVSFRVKV----NE------NGL 400 (462)
Q Consensus 336 q~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~--DQ~~~a~rv~---~~~g~G~~~~~----~~------~~~ 400 (462)
-.+++..++ ++|+-.|..|+ |+..+|+|||+ +... =|+.||+++. . .|+...+.. ++ ...
T Consensus 229 ~~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~ 303 (347)
T PRK14089 229 THKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEF 303 (347)
T ss_pred HHHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhccc
Confidence 357889999 89999999999 99999999998 6544 4688999988 5 566544422 00 123
Q ss_pred cCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 012513 401 VGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQV 450 (462)
Q Consensus 401 ~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 450 (462)
.|++.|.+++.+. .. +.+++...++.+.+. + |++.+..+.+
T Consensus 304 ~t~~~la~~i~~~-~~---~~~~~~~~~l~~~l~----~-~a~~~~A~~i 344 (347)
T PRK14089 304 VTVENLLKAYKEM-DR---EKFFKKSKELREYLK----H-GSAKNVAKIL 344 (347)
T ss_pred CCHHHHHHHHHHH-HH---HHHHHHHHHHHHHhc----C-CHHHHHHHHH
Confidence 7899999999772 11 356666666655553 3 5555544433
No 103
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.47 E-value=0.0034 Score=61.82 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=84.0
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEE-EEeCCcccccccccccccCCCCCCCCCChhHHHh---hC-CCceEe
Q 012513 256 VLFVCFGSGGTLSQEQLNELALGLEMSGQRFLW-VAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDR---TK-GVGLVV 330 (462)
Q Consensus 256 ~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~---~~-~~~~~~ 330 (462)
.+++.+|.......+.+..+++++......+-+ .++.+.. -+.+.+. .. .+++..
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~--------------------~~~l~~~~~~~~l~~~v~f 240 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD--------------------FEKCKAYSRELGIEQRIIW 240 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc--------------------HHHHHHHHHHcCCCCeEEE
Confidence 566777776432334466677777765433333 3343211 0122221 11 357888
Q ss_pred ccCcch--hh---hhcccccccccc--c--cCchhHHHHHHhCCceeecc-cccchhhhhHHhhcccceeEEeeecCCcc
Q 012513 331 PSWSPQ--VQ---VLRHGSTGGFLS--H--CGWNSILESIVHGVPIIAWP-LYSEQKMNAVLLTDDLKVSFRVKVNENGL 400 (462)
Q Consensus 331 ~~~~pq--~~---lL~~~~~~~~I~--H--GG~~t~~eal~~GvP~v~~P-~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~ 400 (462)
.+|+++ +. .+..++ ++|. + |-.+++.||+++|+|+|+.- ..+ ....+.+ -..|..+..
T Consensus 241 ~G~~~~~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~-~~~G~lv~~----- 308 (359)
T PRK09922 241 HGWQSQPWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKP-GLNGELYTP----- 308 (359)
T ss_pred ecccCCcHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccC-CCceEEECC-----
Confidence 888754 22 344466 4443 3 33679999999999999876 433 2234555 456776643
Q ss_pred cCHHHHHHHHHHHhcCch---HHHHHHHHHHHHH
Q 012513 401 VGREDIANYAKGLIQGEE---GKLLRKKMRALKD 431 (462)
Q Consensus 401 ~~~~~l~~ai~~vl~~~~---~~~~r~~a~~l~~ 431 (462)
-+.++++++|.++++|++ ...++++++++.+
T Consensus 309 ~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 309 GNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred CCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 478999999999999874 2334444444443
No 104
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.47 E-value=0.1 Score=53.53 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=48.9
Q ss_pred CceEe-ccCcch--hhhhccccccccccc---cCc-hhHHHHHHhCCceeecccccchhhhhHHhhc-----ccceeEEe
Q 012513 326 VGLVV-PSWSPQ--VQVLRHGSTGGFLSH---CGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTD-----DLKVSFRV 393 (462)
Q Consensus 326 ~~~~~-~~~~pq--~~lL~~~~~~~~I~H---GG~-~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~-----~~g~G~~~ 393 (462)
+++++ .++... ..++..++ +++.- -|+ .+.+||+++|+|+|+....+= ...|.+ +-|.|..+
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~----~e~v~~~~~~~~~~~G~~~ 424 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGAD--FFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGL----ADTVIDYNEDTGEGTGFVF 424 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCC--EEECCCCCCCCcHHHHHHhhCCCCCEECcCCCc----cceEeCCcCCCCCCCeEEe
Confidence 45543 344322 24677788 45532 222 478999999999998765431 112222 13477777
Q ss_pred eecCCcccCHHHHHHHHHHHhc
Q 012513 394 KVNENGLVGREDIANYAKGLIQ 415 (462)
Q Consensus 394 ~~~~~~~~~~~~l~~ai~~vl~ 415 (462)
.. -+.+++.+++.+++.
T Consensus 425 ~~-----~~~~~l~~~i~~~l~ 441 (476)
T cd03791 425 EG-----YNADALLAALRRALA 441 (476)
T ss_pred CC-----CCHHHHHHHHHHHHH
Confidence 53 368899999999885
No 105
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.45 E-value=0.0094 Score=59.22 Aligned_cols=113 Identities=9% Similarity=0.072 Sum_probs=70.7
Q ss_pred CceEeccCcchhh---hhcccccccccc----ccCc-hhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecC
Q 012513 326 VGLVVPSWSPQVQ---VLRHGSTGGFLS----HCGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 397 (462)
Q Consensus 326 ~~~~~~~~~pq~~---lL~~~~~~~~I~----HGG~-~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~ 397 (462)
.++...+++|+++ ++..++ ++|. +.|+ .+++||+++|+|+|+....+ +...+.+ -..|..+...
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aD--v~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~-~~~G~~l~~~- 328 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLAD--LVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLE-GITGYHLAEP- 328 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCC--EEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhccc-CCceEEEeCC-
Confidence 4677789998654 478888 4553 2443 57789999999999977543 3444555 4567655332
Q ss_pred CcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhc
Q 012513 398 NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKN 456 (462)
Q Consensus 398 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 456 (462)
-+.++++++|.++++|+ ..++ +++..++...+.-+-....+++.+-+++
T Consensus 329 ---~d~~~la~~I~~ll~d~---~~~~----~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 ---MTSDSIISDINRTLADP---ELTQ----IAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred ---CCHHHHHHHHHHHHcCH---HHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 47899999999999985 3322 2222222222344555555555555544
No 106
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=0.011 Score=56.94 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=66.5
Q ss_pred hhhccccccccccccCchhHHHHHHhCCceeecccc-cchhhhhHHhhcccce-eE-----------EeeecCCcccCHH
Q 012513 338 QVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY-SEQKMNAVLLTDDLKV-SF-----------RVKVNENGLVGRE 404 (462)
Q Consensus 338 ~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~-~DQ~~~a~rv~~~~g~-G~-----------~~~~~~~~~~~~~ 404 (462)
.++..++ +.+.-+|. -++|+..+|+|||+.=-. .=-++.+.+..+ ... ++ ++--+ ..+++
T Consensus 260 ~a~~~aD--~al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~---~~~pe 332 (381)
T COG0763 260 KAFAAAD--AALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQE---DCTPE 332 (381)
T ss_pred HHHHHhh--HHHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhh---hcCHH
Confidence 3666777 56666665 468999999999875211 111234555444 222 11 11112 26799
Q ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 012513 405 DIANYAKGLIQGE-EGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWK 455 (462)
Q Consensus 405 ~l~~ai~~vl~~~-~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 455 (462)
.|.+++.+++.|+ +...+++.-.++.+.++ ++++++.+.+.+++.++
T Consensus 333 ~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 333 NLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 9999999999986 24456666666666666 56677777776666543
No 107
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.31 E-value=0.0023 Score=55.52 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=58.8
Q ss_pred CceEeccCcch---hhhhccccccccccc----cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCC
Q 012513 326 VGLVVPSWSPQ---VQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 398 (462)
Q Consensus 326 ~~~~~~~~~pq---~~lL~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~ 398 (462)
+++.+.++.++ ..++..++ ++|+. |..+++.||+++|+|+|+.. ...+...+.. ...|..+..
T Consensus 73 ~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~-~~~g~~~~~--- 142 (172)
T PF00534_consen 73 ENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIIND-GVNGFLFDP--- 142 (172)
T ss_dssp TTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGT-TTSEEEEST---
T ss_pred ccccccccccccccccccccce--eccccccccccccccccccccccceeecc----ccCCceeecc-ccceEEeCC---
Confidence 46777788873 66777888 56655 56779999999999999744 4555666666 566877753
Q ss_pred cccCHHHHHHHHHHHhcCc
Q 012513 399 GLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 399 ~~~~~~~l~~ai~~vl~~~ 417 (462)
-+.++++++|.+++.++
T Consensus 143 --~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 143 --NDIEELADAIEKLLNDP 159 (172)
T ss_dssp --TSHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHCCH
Confidence 47899999999999874
No 108
>PLN02949 transferase, transferring glycosyl groups
Probab=97.16 E-value=0.36 Score=49.18 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=55.8
Q ss_pred CCceEeccCcchhh---hhcccccccccc---ccCch-hHHHHHHhCCceeecccccchhhhhHHhhcc-cc-eeEEeee
Q 012513 325 GVGLVVPSWSPQVQ---VLRHGSTGGFLS---HCGWN-SILESIVHGVPIIAWPLYSEQKMNAVLLTDD-LK-VSFRVKV 395 (462)
Q Consensus 325 ~~~~~~~~~~pq~~---lL~~~~~~~~I~---HGG~~-t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~-~g-~G~~~~~ 395 (462)
.+++...+++|+++ +|..++ ++|+ +-|+| ++.||+++|+|+|+....+--. ..+..+ -| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 35677889998754 567777 4552 23333 8999999999999987643110 011110 01 23222
Q ss_pred cCCcccCHHHHHHHHHHHhcCc-h-HHHHHHHHHH
Q 012513 396 NENGLVGREDIANYAKGLIQGE-E-GKLLRKKMRA 428 (462)
Q Consensus 396 ~~~~~~~~~~l~~ai~~vl~~~-~-~~~~r~~a~~ 428 (462)
-+.++++++|.++++++ + ...+++++++
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~ 436 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARK 436 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 26889999999999843 1 2344455444
No 109
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.11 E-value=0.0062 Score=60.10 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=64.5
Q ss_pred CceEeccCcch-hhhhccccccccccc--cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccC
Q 012513 326 VGLVVPSWSPQ-VQVLRHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVG 402 (462)
Q Consensus 326 ~~~~~~~~~pq-~~lL~~~~~~~~I~H--GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~ 402 (462)
+++.+.++.++ ..++..+++-++.++ |...+++||+++|+|+|+..... .....+.. -..|..+.. -+
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~-~~~G~lv~~-----~d 331 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIED-GENGYLVPK-----GD 331 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHccc-CCCceEeCC-----Cc
Confidence 45666676655 677888885444454 34569999999999999865431 12334444 456776653 37
Q ss_pred HHHHHHHHHHHhcCch-HHHHHHHHHHHH
Q 012513 403 REDIANYAKGLIQGEE-GKLLRKKMRALK 430 (462)
Q Consensus 403 ~~~l~~ai~~vl~~~~-~~~~r~~a~~l~ 430 (462)
.++++++|.+++.+++ ...+.+++++.+
T Consensus 332 ~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 360 (372)
T cd04949 332 IEALAEAIIELLNDPKLLQKFSEAAYENA 360 (372)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 8999999999999862 445555555543
No 110
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0013 Score=53.06 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=41.5
Q ss_pred hhhhccccccccccccCchhHHHHHHhCCceeeccccc-------c-hhhhhHHhhcccceeEEee
Q 012513 337 VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS-------E-QKMNAVLLTDDLKVSFRVK 394 (462)
Q Consensus 337 ~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~-------D-Q~~~a~rv~~~~g~G~~~~ 394 (462)
+.+...++ ++|+|+|.||++.++..++|.+++|-.. | |-..|..+++ .+.-+...
T Consensus 60 Qsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~s 122 (161)
T COG5017 60 QSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACS 122 (161)
T ss_pred HHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEc
Confidence 44555566 8999999999999999999999999543 2 4556666776 66655544
No 111
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.03 E-value=0.0023 Score=53.07 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=48.7
Q ss_pred CceEeccCcch-hhhhccccccccccc---cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCccc
Q 012513 326 VGLVVPSWSPQ-VQVLRHGSTGGFLSH---CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 401 (462)
Q Consensus 326 ~~~~~~~~~pq-~~lL~~~~~~~~I~H---GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~ 401 (462)
.++...+|++. .+++..+++.+..+. |-.+++.|++++|+|+|+.+.. ....++. .+.|..+ . -
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~--~----~ 120 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLV--A----N 120 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---T----T
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEE--C----C
Confidence 38888888864 677888997666542 2348999999999999998762 2223333 4667665 3 4
Q ss_pred CHHHHHHHHHHHhcC
Q 012513 402 GREDIANYAKGLIQG 416 (462)
Q Consensus 402 ~~~~l~~ai~~vl~~ 416 (462)
+++++.++|.++++|
T Consensus 121 ~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 121 DPEELAEAIERLLND 135 (135)
T ss_dssp -HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcC
Confidence 899999999999864
No 112
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.99 E-value=0.43 Score=47.08 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=51.5
Q ss_pred CceEeccCc--ch---hhhhccccccccccc----cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeec
Q 012513 326 VGLVVPSWS--PQ---VQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN 396 (462)
Q Consensus 326 ~~~~~~~~~--pq---~~lL~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~ 396 (462)
+++.+.++. ++ ..++..++ +|+.- |-..+++||+++|+|+|+....+ ....+.. -..|..++
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~-~~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIED-GETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhccc-CCceEEeC--
Confidence 456666665 43 35677788 56642 33459999999999999876443 2333444 45566443
Q ss_pred CCcccCHHHHHHHHHHHhcCc
Q 012513 397 ENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 397 ~~~~~~~~~l~~ai~~vl~~~ 417 (462)
+.++++.+|.+++.++
T Consensus 323 -----~~~~~a~~i~~ll~~~ 338 (372)
T cd03792 323 -----TVEEAAVRILYLLRDP 338 (372)
T ss_pred -----CcHHHHHHHHHHHcCH
Confidence 3467888999999875
No 113
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.83 E-value=0.63 Score=46.60 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=39.1
Q ss_pred hhhcccccccccc----ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHH
Q 012513 338 QVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYA 410 (462)
Q Consensus 338 ~lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai 410 (462)
.++..++ +||. -|-.++++||+++|+|+|+....+ -+ ..+.. +.|..++.. +.++|++++
T Consensus 302 ~~y~~aD--vfV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~~---Eiv~~--~~G~lv~~~-----d~~~La~~~ 365 (405)
T PRK10125 302 SALNQMD--ALVFSSRVDNYPLILCEALSIGVPVIATHSDA-AR---EVLQK--SGGKTVSEE-----EVLQLAQLS 365 (405)
T ss_pred HHHHhCC--EEEECCccccCcCHHHHHHHcCCCEEEeCCCC-hH---HhEeC--CcEEEECCC-----CHHHHHhcc
Confidence 3445566 4443 455678999999999999988765 22 22333 468777643 566777653
No 114
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.82 E-value=0.0079 Score=58.78 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=75.4
Q ss_pred CCCeEEEEEeCCCCCCC-H---HHHHHHHHHHHhC-CCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCC-
Q 012513 252 PSESVLFVCFGSGGTLS-Q---EQLNELALGLEMS-GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKG- 325 (462)
Q Consensus 252 ~~~~~v~vs~Gs~~~~~-~---~~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~- 325 (462)
.+++.++|++=...... + ..+.+++++|... +.++||.+..... .-..+.++++.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~-------------------~~~~i~~~l~~~ 238 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR-------------------GSDIIIEKLKKY 238 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH-------------------HHHHHHHHHTT-
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch-------------------HHHHHHHHhccc
Confidence 45679999985554444 3 3556667777666 6678887763211 00112222221
Q ss_pred CceEeccCcc---hhhhhccccccccccccCchhHH-HHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCccc
Q 012513 326 VGLVVPSWSP---QVQVLRHGSTGGFLSHCGWNSIL-ESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 401 (462)
Q Consensus 326 ~~~~~~~~~p---q~~lL~~~~~~~~I~HGG~~t~~-eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~ 401 (462)
+++.+..-++ .-.+|.+++ ++|+..| +++ ||.+.|+|+|.+=-.++.+.- +. .|..+.+ . .
T Consensus 239 ~~v~~~~~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe~---r~--~~~nvlv--~----~ 303 (346)
T PF02350_consen 239 DNVRLIEPLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNIRDSGERQEG---RE--RGSNVLV--G----T 303 (346)
T ss_dssp TTEEEE----HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEECSSS-S-HHH---HH--TTSEEEE--T----S
T ss_pred CCEEEECCCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEecCCCCCHHH---Hh--hcceEEe--C----C
Confidence 3676655554 577888999 8999999 666 999999999999333333321 11 2344332 2 6
Q ss_pred CHHHHHHHHHHHhcC
Q 012513 402 GREDIANYAKGLIQG 416 (462)
Q Consensus 402 ~~~~l~~ai~~vl~~ 416 (462)
+.++|.+++++++.+
T Consensus 304 ~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 304 DPEAIIQAIEKALSD 318 (346)
T ss_dssp SHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999999999976
No 115
>PLN02939 transferase, transferring glycosyl groups
Probab=96.77 E-value=1.2 Score=48.80 Aligned_cols=83 Identities=6% Similarity=0.002 Sum_probs=52.2
Q ss_pred CceEeccCcchh---hhhcccccccccc----ccCchhHHHHHHhCCceeeccccc--chhhh--hHHhhcccceeEEee
Q 012513 326 VGLVVPSWSPQV---QVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYS--EQKMN--AVLLTDDLKVSFRVK 394 (462)
Q Consensus 326 ~~~~~~~~~pq~---~lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~--DQ~~~--a~rv~~~~g~G~~~~ 394 (462)
++|.+.++.+.. .++..++ +||. =+-..+.+||+++|+|.|+....+ |--.+ ...+...-+.|..+.
T Consensus 837 drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 457776777764 4788888 6663 233458999999999999876654 21110 111111024566654
Q ss_pred ecCCcccCHHHHHHHHHHHhc
Q 012513 395 VNENGLVGREDIANYAKGLIQ 415 (462)
Q Consensus 395 ~~~~~~~~~~~l~~ai~~vl~ 415 (462)
. -+++++.++|.+++.
T Consensus 915 ~-----~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 T-----PDEQGLNSALERAFN 930 (977)
T ss_pred C-----CCHHHHHHHHHHHHH
Confidence 3 467888888888764
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.76 E-value=1.1 Score=48.08 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=63.2
Q ss_pred CCceEeccCcch-hhhhcccccccccc---ccC-chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCc
Q 012513 325 GVGLVVPSWSPQ-VQVLRHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 399 (462)
Q Consensus 325 ~~~~~~~~~~pq-~~lL~~~~~~~~I~---HGG-~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~ 399 (462)
.++|.+.+|.++ ..+|..++ +||. +.| .++++||+++|+|+|+....+ ....|.+ -..|..++..+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaD--v~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~d-g~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFN--AFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQE-GVTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcC--EEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccC-CCCEEEeCCCC--
Confidence 356778888775 67788888 4543 445 568999999999999977542 3445556 45688887554
Q ss_pred ccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 012513 400 LVGREDIANYAKGLIQGEE-GKLLRKKMRAL 429 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l 429 (462)
.+.+++.+++.+++.+.. -+.+++++++.
T Consensus 644 -~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 644 -VTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred -CChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 666777777777665321 13555555443
No 117
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.69 E-value=0.011 Score=57.68 Aligned_cols=111 Identities=13% Similarity=0.249 Sum_probs=78.4
Q ss_pred CceEeccCcchhhhhcc--ccccccccc-------cCc------hhHHHHHHhCCceeecccccchhhhhHHhhccccee
Q 012513 326 VGLVVPSWSPQVQVLRH--GSTGGFLSH-------CGW------NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVS 390 (462)
Q Consensus 326 ~~~~~~~~~pq~~lL~~--~~~~~~I~H-------GG~------~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G 390 (462)
+|+...+|+|++++..+ .+.+++... +.+ +-+.+.+++|+|+|+.+ ....+..|++ .++|
T Consensus 207 ~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~-~~~G 281 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVE-NGLG 281 (333)
T ss_pred CCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHh-CCce
Confidence 37888899999776432 133332221 111 23777899999999865 4567788888 8999
Q ss_pred EEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 012513 391 FRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQR 453 (462)
Q Consensus 391 ~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 453 (462)
+.++ +.+++.+++.++. +++-..+++|++++++.++ .|.-.++++++++..
T Consensus 282 ~~v~-------~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 282 FVVD-------SLEELPEIIDNIT-EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIKE 332 (333)
T ss_pred EEeC-------CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHhc
Confidence 9875 3468999998853 4445678999999999999 477666677766653
No 118
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.64 E-value=0.042 Score=56.49 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=64.5
Q ss_pred CCceEeccCcchhhhhcccccccccc---ccC-chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeec-CCc
Q 012513 325 GVGLVVPSWSPQVQVLRHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN-ENG 399 (462)
Q Consensus 325 ~~~~~~~~~~pq~~lL~~~~~~~~I~---HGG-~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~-~~~ 399 (462)
.+++...++.+...++..++ +||. .-| ..+++||+++|+|+|+....+ .....++. -..|..++.. +.+
T Consensus 375 ~~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~-g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIED-NKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccC-CCCEEEEeCCcccc
Confidence 34677788888889999998 5553 233 469999999999999976531 12334444 3457766521 100
Q ss_pred -ccC-HHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012513 400 -LVG-REDIANYAKGLIQGEEGKLLRKKMRALK 430 (462)
Q Consensus 400 -~~~-~~~l~~ai~~vl~~~~~~~~r~~a~~l~ 430 (462)
.-. .++++++|.++++++....+.+++++.+
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a 481 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIA 481 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 012 7889999999996543445555665543
No 119
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.58 E-value=0.13 Score=52.65 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=56.8
Q ss_pred CCceEeccCcchhhhhccccccccccc----cCchhHHHHHHhCCceeecccccchhhhhHHhhccc-----c-eeEEee
Q 012513 325 GVGLVVPSWSPQVQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDL-----K-VSFRVK 394 (462)
Q Consensus 325 ~~~~~~~~~~pq~~lL~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~-----g-~G~~~~ 394 (462)
.+++...+...-..+++.+++ +|.- |-.++++||+++|+|+|+-... .....+.. . | .|..+.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~g----~~~elv~~-~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDVG----SCRELIEG-ADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCCC----ChHHHhcC-CcccccCCceEEEC
Confidence 357777776666888888884 4422 4457999999999999995443 33333433 2 2 566654
Q ss_pred ecCCcccCHHHHHHHHHHHhcCc
Q 012513 395 VNENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 395 ~~~~~~~~~~~l~~ai~~vl~~~ 417 (462)
. -+.++++++|.++++|+
T Consensus 426 ~-----~d~~~la~ai~~ll~~~ 443 (475)
T cd03813 426 P-----ADPEALARAILRLLKDP 443 (475)
T ss_pred C-----CCHHHHHHHHHHHhcCH
Confidence 3 47899999999999985
No 120
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.40 E-value=0.088 Score=52.13 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=51.7
Q ss_pred CCceEeccCcchhh---hhccccccccc------cccCc-hhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEee
Q 012513 325 GVGLVVPSWSPQVQ---VLRHGSTGGFL------SHCGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK 394 (462)
Q Consensus 325 ~~~~~~~~~~pq~~---lL~~~~~~~~I------~HGG~-~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~ 394 (462)
.+|+...+++|+++ .+.++++.++- +.++. +.+.|++++|+|+|..++ ...++. .+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEEe
Confidence 35888899999755 46678853332 22332 468999999999998763 122333 33 32222
Q ss_pred ecCCcccCHHHHHHHHHHHhcCc
Q 012513 395 VNENGLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 395 ~~~~~~~~~~~l~~ai~~vl~~~ 417 (462)
. -+.+++.++|.+++.++
T Consensus 324 -~----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 -A----DDPEEFVAAIEKALLED 341 (373)
T ss_pred -C----CCHHHHHHHHHHHHhcC
Confidence 1 37899999999987653
No 121
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.29 E-value=0.0057 Score=47.44 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=44.7
Q ss_pred chhhcccCCCCCCeEEEEEeCCCCCC---C--HHHHHHHHHHHHhCCCceEEEEeCCcc
Q 012513 242 PACLKWLDEQPSESVLFVCFGSGGTL---S--QEQLNELALGLEMSGQRFLWVAKSPHE 295 (462)
Q Consensus 242 ~~~~~wl~~~~~~~~v~vs~Gs~~~~---~--~~~~~~i~~al~~~~~~~i~~~~~~~~ 295 (462)
..+..|+...+.++.|+||+||.... . ...+..++++++.++..+|..+.....
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 66778999989999999999997432 2 247888999999999999999887544
No 122
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.28 E-value=0.13 Score=51.52 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=73.6
Q ss_pred cCcchh--hhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEE-eeecCCcccCHHHHHH
Q 012513 332 SWSPQV--QVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFR-VKVNENGLVGREDIAN 408 (462)
Q Consensus 332 ~~~pq~--~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~-~~~~~~~~~~~~~l~~ 408 (462)
++-|.+ .++.+++ ++|..= .-++.-|+..|||.+.++. |+ -....+.. +|..-. .+..+ ++.++|.+
T Consensus 315 ~~~~~e~~~iIs~~d--l~ig~R-lHa~I~a~~~gvP~i~i~Y--~~-K~~~~~~~-lg~~~~~~~~~~---l~~~~Li~ 384 (426)
T PRK10017 315 ELNDLEMGKILGACE--LTVGTR-LHSAIISMNFGTPAIAINY--EH-KSAGIMQQ-LGLPEMAIDIRH---LLDGSLQA 384 (426)
T ss_pred CCChHHHHHHHhhCC--EEEEec-chHHHHHHHcCCCEEEeee--hH-HHHHHHHH-cCCccEEechhh---CCHHHHHH
Confidence 344443 7888888 777642 3467889999999999996 43 34444566 887754 45554 88999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhc
Q 012513 409 YAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKN 456 (462)
Q Consensus 409 ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 456 (462)
.++++++|. +.+++..++-.+.+++ -+.+.+.++++++-+
T Consensus 385 ~v~~~~~~r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 385 MVADTLGQL--PALNARLAEAVSRERQ------TGMQMVQSVLERIGE 424 (426)
T ss_pred HHHHHHhCH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 999999986 4666666655555554 244556667766543
No 123
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.16 E-value=0.053 Score=54.98 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=77.6
Q ss_pred CeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHH-----hhCCCce
Q 012513 254 ESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD-----RTKGVGL 328 (462)
Q Consensus 254 ~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~~~ 328 (462)
..+||.+|--....+|+.++.-.+-|++.+.-++|..+.+.. -..+|.. .++.+.+
T Consensus 758 d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~-------------------ge~rf~ty~~~~Gl~p~ri 818 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV-------------------GEQRFRTYAEQLGLEPDRI 818 (966)
T ss_pred CeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc-------------------chHHHHHHHHHhCCCccce
Confidence 349999998888899999999888899999999999987643 0012211 1233445
Q ss_pred EeccCcch-----hhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhH-HhhcccceeEEee
Q 012513 329 VVPSWSPQ-----VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAV-LLTDDLKVSFRVK 394 (462)
Q Consensus 329 ~~~~~~pq-----~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~-rv~~~~g~G~~~~ 394 (462)
+..+-++- ...|....+.-+.+. |.-|.++.|+.|||||.+|.-.---..|. .+.. +|+|-.+.
T Consensus 819 ifs~va~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hlia 888 (966)
T KOG4626|consen 819 IFSPVAAKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIA 888 (966)
T ss_pred eeccccchHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHh
Confidence 44433332 222222222233444 67899999999999999996543333333 4566 89987554
No 124
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.046 Score=55.08 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=74.0
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhh-----CCCc
Q 012513 253 SESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT-----KGVG 327 (462)
Q Consensus 253 ~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~ 327 (462)
++.+||++|+......++.+..=++=|+..+.-++|..+++.. ..+-+.+.+.. ....
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~-----------------~~~~~~l~~la~~~Gv~~eR 490 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD-----------------AEINARLRDLAEREGVDSER 490 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc-----------------HHHHHHHHHHHHHcCCChhh
Confidence 4569999999999999999988777788889999998877422 01112222221 2334
Q ss_pred eEeccCcchh---hhhcccccccccc---ccCchhHHHHHHhCCceeecccccchhh
Q 012513 328 LVVPSWSPQV---QVLRHGSTGGFLS---HCGWNSILESIVHGVPIIAWPLYSEQKM 378 (462)
Q Consensus 328 ~~~~~~~pq~---~lL~~~~~~~~I~---HGG~~t~~eal~~GvP~v~~P~~~DQ~~ 378 (462)
+++.+-.|.. +=+.-++ +|.. .||.-|+.|+|+.|||+|..+ ++||-
T Consensus 491 L~f~p~~~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 491 LRFLPPAPNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred eeecCCCCCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 5565666644 3344466 5553 699999999999999999988 88874
No 125
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.99 E-value=0.6 Score=41.68 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=33.6
Q ss_pred CceEeccCcch----hhhhccccccccccccC----chhHHHHHHhCCceeecccccch
Q 012513 326 VGLVVPSWSPQ----VQVLRHGSTGGFLSHCG----WNSILESIVHGVPIIAWPLYSEQ 376 (462)
Q Consensus 326 ~~~~~~~~~pq----~~lL~~~~~~~~I~HGG----~~t~~eal~~GvP~v~~P~~~DQ 376 (462)
+++.+.+++++ ..++..++ ++|+-.. .+++.||+++|+|+|+.+....+
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~d--i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAAD--VFVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCC--EEEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 36666677532 33333366 5666554 68999999999999998865543
No 126
>PHA01633 putative glycosyl transferase group 1
Probab=95.64 E-value=0.64 Score=45.06 Aligned_cols=83 Identities=14% Similarity=0.048 Sum_probs=51.4
Q ss_pred ceEec---cCcchh---hhhcccccccccc----ccCchhHHHHHHhCCceeeccc------ccch------hhhhHHhh
Q 012513 327 GLVVP---SWSPQV---QVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPL------YSEQ------KMNAVLLT 384 (462)
Q Consensus 327 ~~~~~---~~~pq~---~lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~------~~DQ------~~~a~rv~ 384 (462)
++... +++++. .++..++ +||. -|=.++++||+++|+|+|+--. .+|+ ..+.....
T Consensus 202 ~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~ 279 (335)
T PHA01633 202 NVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYY 279 (335)
T ss_pred cEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhc
Confidence 56555 455654 5677788 5664 2335689999999999998643 2232 11222111
Q ss_pred -cccceeEEeeecCCcccCHHHHHHHHHHHhcC
Q 012513 385 -DDLKVSFRVKVNENGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 385 -~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~ 416 (462)
.+.|.|..++ . .+++++++++.+++..
T Consensus 280 ~~~~g~g~~~~--~---~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 280 DKEHGQKWKIH--K---FQIEDMANAIILAFEL 307 (335)
T ss_pred CcccCceeeec--C---CCHHHHHHHHHHHHhc
Confidence 1135555544 2 6899999999999553
No 127
>PHA01630 putative group 1 glycosyl transferase
Probab=95.48 E-value=0.38 Score=46.71 Aligned_cols=112 Identities=7% Similarity=0.006 Sum_probs=60.6
Q ss_pred cCcchhh---hhccccccccc--c-ccC-chhHHHHHHhCCceeeccccc--chhh---hhHHhhcc----------cce
Q 012513 332 SWSPQVQ---VLRHGSTGGFL--S-HCG-WNSILESIVHGVPIIAWPLYS--EQKM---NAVLLTDD----------LKV 389 (462)
Q Consensus 332 ~~~pq~~---lL~~~~~~~~I--~-HGG-~~t~~eal~~GvP~v~~P~~~--DQ~~---~a~rv~~~----------~g~ 389 (462)
+++|+++ ++..++ +|| + ..| ..+++||+++|+|+|+.-..+ |.-. |+..+..+ .++
T Consensus 196 ~~v~~~~l~~~y~~aD--v~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCD--ILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCC--EEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 3466544 577788 444 2 232 568999999999999977543 3211 11111110 122
Q ss_pred eEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 012513 390 SFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWK 455 (462)
Q Consensus 390 G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 455 (462)
|..+. .+.+++.+++.+++.|.+-+.++++...-+.... +.-+.....+++.+-++
T Consensus 274 G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 274 GYFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILE 329 (331)
T ss_pred ccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHh
Confidence 33222 3567888888888876311245544444444333 35555555555555443
No 128
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.04 E-value=0.59 Score=47.90 Aligned_cols=79 Identities=10% Similarity=-0.053 Sum_probs=50.5
Q ss_pred CceEeccCcchh---hhhcccccccccc---ccCch-hHHHHHHhCCceeecccccchhhhhHHhhc-----ccceeEEe
Q 012513 326 VGLVVPSWSPQV---QVLRHGSTGGFLS---HCGWN-SILESIVHGVPIIAWPLYSEQKMNAVLLTD-----DLKVSFRV 393 (462)
Q Consensus 326 ~~~~~~~~~pq~---~lL~~~~~~~~I~---HGG~~-t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~-----~~g~G~~~ 393 (462)
.++.+....+.. .++..++ ++|. +-|+| +.+||+++|+|+|+....+ ....|.. .-+.|..+
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~ 419 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLF 419 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEe
Confidence 345444444543 4777888 4552 23444 8899999999999876543 2222333 02677776
Q ss_pred eecCCcccCHHHHHHHHHHHhc
Q 012513 394 KVNENGLVGREDIANYAKGLIQ 415 (462)
Q Consensus 394 ~~~~~~~~~~~~l~~ai~~vl~ 415 (462)
.. -++++++++|.+++.
T Consensus 420 ~~-----~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 420 EE-----YDPGALLAALSRALR 436 (473)
T ss_pred CC-----CCHHHHHHHHHHHHH
Confidence 53 478899999999886
No 129
>PRK14098 glycogen synthase; Provisional
Probab=94.96 E-value=0.61 Score=48.00 Aligned_cols=82 Identities=9% Similarity=-0.091 Sum_probs=52.1
Q ss_pred CCceEeccCcchh---hhhccccccccccc---cCc-hhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecC
Q 012513 325 GVGLVVPSWSPQV---QVLRHGSTGGFLSH---CGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 397 (462)
Q Consensus 325 ~~~~~~~~~~pq~---~lL~~~~~~~~I~H---GG~-~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~ 397 (462)
++++.+.++.+.. .+++.++ +|+.- =|. .+.+||+++|+|.|+....+-.........+ -+.|..+..
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~-~~~G~l~~~-- 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSED-KGSGFIFHD-- 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCC-CCceeEeCC--
Confidence 3467777777764 5778888 55532 222 4778999999998887754421111111112 356766643
Q ss_pred CcccCHHHHHHHHHHHh
Q 012513 398 NGLVGREDIANYAKGLI 414 (462)
Q Consensus 398 ~~~~~~~~l~~ai~~vl 414 (462)
-+++++.++|.+++
T Consensus 436 ---~d~~~la~ai~~~l 449 (489)
T PRK14098 436 ---YTPEALVAKLGEAL 449 (489)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 47889999999876
No 130
>PLN02501 digalactosyldiacylglycerol synthase
Probab=94.88 E-value=4.7 Score=42.77 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=51.7
Q ss_pred eEeccCcchh-hhhcccccccccc----ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccC
Q 012513 328 LVVPSWSPQV-QVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVG 402 (462)
Q Consensus 328 ~~~~~~~pq~-~lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~ 402 (462)
+...++.++. .++..++ +||. -|=.++++||+++|+|+|+....+... +.. -+.|. +. -+
T Consensus 603 V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~-g~nGl-l~------~D 667 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS-FPNCL-TY------KT 667 (794)
T ss_pred EEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee-cCCeE-ec------CC
Confidence 5556777754 5888888 5654 344568999999999999987765321 223 23333 21 26
Q ss_pred HHHHHHHHHHHhcCc
Q 012513 403 REDIANYAKGLIQGE 417 (462)
Q Consensus 403 ~~~l~~ai~~vl~~~ 417 (462)
.+++.++|.+++.++
T Consensus 668 ~EafAeAI~~LLsd~ 682 (794)
T PLN02501 668 SEDFVAKVKEALANE 682 (794)
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999986
No 131
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.55 E-value=0.76 Score=47.36 Aligned_cols=65 Identities=20% Similarity=0.127 Sum_probs=45.8
Q ss_pred CCceEeccCcch-hhhhcccccccccc---ccC-chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeec
Q 012513 325 GVGLVVPSWSPQ-VQVLRHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN 396 (462)
Q Consensus 325 ~~~~~~~~~~pq-~~lL~~~~~~~~I~---HGG-~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~ 396 (462)
.+++.+.+|..+ ..+|..++ +||. +-| .++++||+++|+|+|+.... .+...|.+ -..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~d-G~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIE-GVSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHccc-CCcEEEECCC
Confidence 356777788654 56788888 6764 334 66999999999999987654 34455556 4678777643
No 132
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.25 E-value=0.51 Score=36.03 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=52.9
Q ss_pred ccCchhHHHHHHhCCceeecccccchhhhhHHhhcccc-eeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 012513 351 HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLK-VSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRAL 429 (462)
Q Consensus 351 HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g-~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l 429 (462)
+|-..-+.|++++|+|+|.-+. ......+.. | -++.. -+.+++.++|..+++|+ ...++-+++.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-------~~~~el~~~i~~ll~~~--~~~~~ia~~a 73 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-------NDPEELAEKIEYLLENP--EERRRIAKNA 73 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-------CCHHHHHHHHHHHHCCH--HHHHHHHHHH
Confidence 5556689999999999998765 222232333 3 22222 27899999999999986 4555555555
Q ss_pred HHHHHhhcCCCCChHHHHHHHH
Q 012513 430 KDAAANALSPDGSSTKSLAQVA 451 (462)
Q Consensus 430 ~~~~~~~~~~~g~~~~~~~~~~ 451 (462)
.+.++ +.-+..+-+++|+
T Consensus 74 ~~~v~----~~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVL----KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHH----HhCCHHHHHHHHH
Confidence 55555 3555555555554
No 133
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.98 E-value=0.89 Score=46.24 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=68.9
Q ss_pred ccCcchhhh---hcccccccccc---ccCch-hHHHHHHhCCc----eeecccccchhhhhHHhhcccceeEEeeecCCc
Q 012513 331 PSWSPQVQV---LRHGSTGGFLS---HCGWN-SILESIVHGVP----IIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 399 (462)
Q Consensus 331 ~~~~pq~~l---L~~~~~~~~I~---HGG~~-t~~eal~~GvP----~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~ 399 (462)
.+.+|+.++ +..++ +|+. +=|+| +..||+++|+| +|+--+.+-... ++-|+.++.
T Consensus 341 ~~~~~~~el~aly~aaD--v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~--------l~~gllVnP---- 406 (456)
T TIGR02400 341 NRSYDREELMALYRAAD--VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE--------LNGALLVNP---- 406 (456)
T ss_pred cCCCCHHHHHHHHHhCc--EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH--------hCCcEEECC----
Confidence 355666554 66788 4553 34644 78899999999 766665543221 334555543
Q ss_pred ccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 012513 400 LVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWK 455 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 455 (462)
.+.++++++|.++++.+. ++.+++.+++.+.+. .-+...-.++++++|.
T Consensus 407 -~d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 -YDIDGMADAIARALTMPL-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred -CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 578999999999998531 356666666666655 2467777788887775
No 134
>PLN02316 synthase/transferase
Probab=91.00 E-value=5.1 Score=44.67 Aligned_cols=115 Identities=6% Similarity=-0.102 Sum_probs=64.2
Q ss_pred ceEeccCcchh---hhhcccccccccc----ccCchhHHHHHHhCCceeeccccc--chhhhhHH----hhc--ccceeE
Q 012513 327 GLVVPSWSPQV---QVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYS--EQKMNAVL----LTD--DLKVSF 391 (462)
Q Consensus 327 ~~~~~~~~pq~---~lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~--DQ~~~a~r----v~~--~~g~G~ 391 (462)
++.+....+.. .++..++ +|+. -+=..+.+||+++|+|.|+....+ |.-..... -+. .-+.|+
T Consensus 901 rV~f~g~~de~lah~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGf 978 (1036)
T PLN02316 901 RARLCLTYDEPLSHLIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGF 978 (1036)
T ss_pred eEEEEecCCHHHHHHHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceE
Confidence 44443344443 5788888 6663 333469999999999999876544 22111100 000 014566
Q ss_pred EeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 012513 392 RVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQR 453 (462)
Q Consensus 392 ~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 453 (462)
.+.. -+++.|..+|.+++.+ |.+....+++..+++++..-|-.+..++.++-
T Consensus 979 lf~~-----~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~L 1030 (1036)
T PLN02316 979 SFDG-----ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMEL 1030 (1036)
T ss_pred EeCC-----CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 6653 4788999999999964 33334444444444444444444444444433
No 135
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=90.15 E-value=1.9 Score=44.62 Aligned_cols=92 Identities=10% Similarity=0.089 Sum_probs=62.3
Q ss_pred CceEeccCcch---hhhhcccccccccccc---CchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCc
Q 012513 326 VGLVVPSWSPQ---VQVLRHGSTGGFLSHC---GWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 399 (462)
Q Consensus 326 ~~~~~~~~~pq---~~lL~~~~~~~~I~HG---G~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~ 399 (462)
..|.+.++.+. ..++.+.. ++|.=+ |.++.+||+.+|+|+| .......|+. -.-|..+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li------ 472 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYII------ 472 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEe------
Confidence 35667777773 55666666 777655 6779999999999999 2222333444 3445444
Q ss_pred ccCHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHH
Q 012513 400 LVGREDIANYAKGLIQGE-EGKLLRKKMRALKDAAA 434 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~~~-~~~~~r~~a~~l~~~~~ 434 (462)
=+..+|.+++...|.+. .+..+...+.+.++...
T Consensus 473 -~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 473 -DDISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 16789999999999987 36666666666665544
No 136
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=89.95 E-value=20 Score=34.92 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=34.8
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcC-CCEEEEEeCCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQH-NFLVSIFIPTI 50 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~-GH~Vt~~~~~~ 50 (462)
|||+++-..+.|++.=...+.+.|+++. +.+|++++.+.
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~ 40 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAW 40 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechh
Confidence 6899999999999999999999998864 78999999763
No 137
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=89.58 E-value=0.6 Score=39.13 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 27 PLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 27 P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
-+..|+++|.++ ||+|+++++....
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~~ 30 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPDP 30 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE---G
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCCC
Confidence 367899999988 9999999976433
No 138
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=88.61 E-value=2.8 Score=34.49 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=53.3
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCchH
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVPIE 92 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 92 (462)
+|++++.....| ...+++.|.++ ||+|+++++..... .. ....++....++.. ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~~~~------~~-----~~~~~i~~~~~~~~--------~k~- 56 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRNDYE------KY-----EIIEGIKVIRLPSP--------RKS- 56 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCCCch------hh-----hHhCCeEEEEecCC--------CCc-
Confidence 366776665555 56789999988 99999999853222 11 11235666666421 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHH---HHHHHcC
Q 012513 93 TRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAF---DVANELD 139 (462)
Q Consensus 93 ~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~---~vA~~lg 139 (462)
....+. . . .+..++++.+||+|.+......+. .++...+
T Consensus 57 --~~~~~~-~----~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~ 98 (139)
T PF13477_consen 57 --PLNYIK-Y----F-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLK 98 (139)
T ss_pred --cHHHHH-H----H-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcC
Confidence 111111 1 1 234445556899998777655322 3445566
No 139
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=88.52 E-value=2.8 Score=40.30 Aligned_cols=134 Identities=10% Similarity=-0.004 Sum_probs=75.7
Q ss_pred CeEEEEEeCC-C--CCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEe
Q 012513 254 ESVLFVCFGS-G--GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVV 330 (462)
Q Consensus 254 ~~~v~vs~Gs-~--~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~ 330 (462)
++.|.+.-|+ . ...+.+.+.++++.+...+.++++..+..... ..-+...+..+..+ +
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~-----------------~~~~~i~~~~~~~~--l 239 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEK-----------------QRAERIAEALPGAV--V 239 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHH-----------------HHHHHHHhhCCCCe--e
Confidence 4455555555 3 45778889999999977677766554433210 00011111112112 2
Q ss_pred ccC--cch-hhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEE-eeecCCcccCHHHH
Q 012513 331 PSW--SPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFR-VKVNENGLVGREDI 406 (462)
Q Consensus 331 ~~~--~pq-~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~-~~~~~~~~~~~~~l 406 (462)
.+- ++| .+++.+++ ++|+. -.|.++=|.+.|+|+|++= ....+ .+..= +|-... +.......++++++
T Consensus 240 ~g~~sL~el~ali~~a~--l~I~~-DSgp~HlAaa~g~P~i~lf-g~t~p---~~~~P-~~~~~~~~~~~~~~~I~~~~V 311 (319)
T TIGR02193 240 LPKMSLAEVAALLAGAD--AVVGV-DTGLTHLAAALDKPTVTLY-GATDP---GRTGG-YGKPNVALLGESGANPTPDEV 311 (319)
T ss_pred cCCCCHHHHHHHHHcCC--EEEeC-CChHHHHHHHcCCCEEEEE-CCCCH---hhccc-CCCCceEEccCccCCCCHHHH
Confidence 222 233 77888899 88887 5688999999999999762 22111 11111 222211 11111224899999
Q ss_pred HHHHHHHh
Q 012513 407 ANYAKGLI 414 (462)
Q Consensus 407 ~~ai~~vl 414 (462)
.+++++++
T Consensus 312 ~~ai~~~~ 319 (319)
T TIGR02193 312 LAALEELL 319 (319)
T ss_pred HHHHHhhC
Confidence 99998864
No 140
>PRK14099 glycogen synthase; Provisional
Probab=85.26 E-value=14 Score=37.98 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=29.1
Q ss_pred CCcEEEEEcCC------CcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 10 PRAHVAMVPTP------GMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 10 ~~~~ill~~~p------~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
++|+|++++.= +-|=-.-+-.|.++|+++ ||+|.++.|-
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~-g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAH-GVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 36899998752 223334467889999887 9999999985
No 141
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=84.86 E-value=3.9 Score=41.72 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=61.4
Q ss_pred eccCcchhhh---hcccccccccc---ccCch-hHHHHHHhCCc----eeecccccchhhhhHHhhcccceeEEeeecCC
Q 012513 330 VPSWSPQVQV---LRHGSTGGFLS---HCGWN-SILESIVHGVP----IIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 398 (462)
Q Consensus 330 ~~~~~pq~~l---L~~~~~~~~I~---HGG~~-t~~eal~~GvP----~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~ 398 (462)
+.+++++.++ +..++ +||. +-|+| +++||+++|+| +|+--+.+-.. . ..-|+.++.
T Consensus 345 ~~g~v~~~el~~~y~~aD--v~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~-------~-~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAAD--VALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAE-------E-LSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhcc--EEEeCccccccCcccceeEEEecCCCceEEEeccccchh-------h-cCCCEEECC---
Confidence 4467777554 66788 4552 34544 77999999999 54443332111 1 123555542
Q ss_pred cccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 012513 399 GLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRW 454 (462)
Q Consensus 399 ~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 454 (462)
.+.++++++|.++++++. +..+++.++..+.++ .-+...-.++++++|
T Consensus 412 --~d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 --YDIDEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred --CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 478999999999998641 233333344444433 345666667776665
No 142
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=84.68 E-value=20 Score=36.19 Aligned_cols=92 Identities=8% Similarity=0.066 Sum_probs=61.0
Q ss_pred CCceEeccCcc-h-hhhhccccccccccccC--chhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcc
Q 012513 325 GVGLVVPSWSP-Q-VQVLRHGSTGGFLSHCG--WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 400 (462)
Q Consensus 325 ~~~~~~~~~~p-q-~~lL~~~~~~~~I~HGG--~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~ 400 (462)
++.++..++.+ + ..++..|++=+-|+||. .+++.||+.+|+|++..=...-. ..+.. . |..+..
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~----~~~i~--~-g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN----RDFIA--S-ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC----ccccc--C-CceecC-----
Confidence 34455567777 3 88999999888888876 67999999999999876533211 11111 1 333332
Q ss_pred cCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012513 401 VGREDIANYAKGLIQGEEGKLLRKKMRALK 430 (462)
Q Consensus 401 ~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~ 430 (462)
-+.+++.++|.++|.++ ..++++..+-+
T Consensus 396 ~~~~~m~~~i~~lL~d~--~~~~~~~~~q~ 423 (438)
T TIGR02919 396 NEVDQLISKLKDLLNDP--NQFRELLEQQR 423 (438)
T ss_pred CCHHHHHHHHHHHhcCH--HHHHHHHHHHH
Confidence 36799999999999985 24444444333
No 143
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.44 E-value=9.5 Score=32.53 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
.+|+|++.-.|+.|-..-.+.++..|.++ |+.|-=+-++...
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EVR 45 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEVR 45 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeeee
Confidence 47899999999999999999999999887 9999755555433
No 144
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.95 E-value=3.4 Score=38.72 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=59.6
Q ss_pred ceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchh--hhhHHhhcccceeEEeeecCCcccCHH
Q 012513 327 GLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQK--MNAVLLTDDLKVSFRVKVNENGLVGRE 404 (462)
Q Consensus 327 ~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~--~~a~rv~~~~g~G~~~~~~~~~~~~~~ 404 (462)
..++..|-...++|.+++ +.|--.|. .+-+++--|+|+|.+|-.+-|+ ..|.|=.+-+|+.+.+-.+ .+.
T Consensus 296 c~l~lsqqsfadiLH~ad--aalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~-----~aq 367 (412)
T COG4370 296 CSLWLSQQSFADILHAAD--AALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP-----EAQ 367 (412)
T ss_pred eEEEEeHHHHHHHHHHHH--HHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC-----chh
Confidence 344445666677777777 44444332 3445678899999999999995 4455555546777665432 233
Q ss_pred HHHHHHHHHhcCchHHHHHHHHH-HHHHHHH
Q 012513 405 DIANYAKGLIQGEEGKLLRKKMR-ALKDAAA 434 (462)
Q Consensus 405 ~l~~ai~~vl~~~~~~~~r~~a~-~l~~~~~ 434 (462)
.-..+.++++.|+ .+.++.+ .-++++-
T Consensus 368 ~a~~~~q~ll~dp---~r~~air~nGqrRiG 395 (412)
T COG4370 368 AAAQAVQELLGDP---QRLTAIRHNGQRRIG 395 (412)
T ss_pred hHHHHHHHHhcCh---HHHHHHHhcchhhcc
Confidence 3444455599985 6666666 4444555
No 145
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=80.98 E-value=5.2 Score=43.81 Aligned_cols=103 Identities=10% Similarity=0.033 Sum_probs=64.2
Q ss_pred Ccch---hhhhcccccccccc---ccCch-hHHHHHHhCCc---eeecc-cccchhhhhHHhhcccc-eeEEeeecCCcc
Q 012513 333 WSPQ---VQVLRHGSTGGFLS---HCGWN-SILESIVHGVP---IIAWP-LYSEQKMNAVLLTDDLK-VSFRVKVNENGL 400 (462)
Q Consensus 333 ~~pq---~~lL~~~~~~~~I~---HGG~~-t~~eal~~GvP---~v~~P-~~~DQ~~~a~rv~~~~g-~G~~~~~~~~~~ 400 (462)
++|+ .+++..++ +||. .-|+| +.+|++++|+| +++++ +.+.-. . +| .|+.++.
T Consensus 363 ~v~~~el~aly~~AD--vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~-------~-l~~~allVnP----- 427 (797)
T PLN03063 363 SVDFNYLCALYAITD--VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQ-------S-LGAGALLVNP----- 427 (797)
T ss_pred CCCHHHHHHHHHhCC--EEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchh-------h-hcCCeEEECC-----
Confidence 4454 35666788 4553 44776 67799999999 44444 333111 1 33 4666653
Q ss_pred cCHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcC
Q 012513 401 VGREDIANYAKGLIQ-GEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKNP 457 (462)
Q Consensus 401 ~~~~~l~~ai~~vl~-~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 457 (462)
.+.++++++|.++++ ++ ++.+++.+++.+.+++ -+...-.+.++++|.+.
T Consensus 428 ~D~~~lA~AI~~aL~m~~--~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 428 WNITEVSSAIKEALNMSD--EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred CCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 578999999999998 43 3455566666666553 34555566666666544
No 146
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=80.52 E-value=13 Score=32.09 Aligned_cols=84 Identities=7% Similarity=0.057 Sum_probs=39.7
Q ss_pred hcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHhc
Q 012513 37 RQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVP-IETRIILTLVRSLSSLRDALKVLTE 115 (462)
Q Consensus 37 ~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~l~~~~~ 115 (462)
++ ||+|++++...... .++|+..+.+.... ....+.. ....+...+.+. ....+.+.++.+
T Consensus 1 q~-gh~v~fl~~~~~~~--------------~~~GV~~~~y~~~~--~~~~~~~~~~~~~e~~~~rg-~av~~a~~~L~~ 62 (171)
T PF12000_consen 1 QR-GHEVVFLTERKRPP--------------IPPGVRVVRYRPPR--GPTPGTHPYVRDFEAAVLRG-QAVARAARQLRA 62 (171)
T ss_pred CC-CCEEEEEecCCCCC--------------CCCCcEEEEeCCCC--CCCCCCCcccccHHHHHHHH-HHHHHHHHHHHH
Confidence 35 99999999554443 11355555543311 1112222 222333333332 222233344433
Q ss_pred c-CCccEEEeCCCcchHHHHHHHc
Q 012513 116 S-TRLVALVVDCFGSAAFDVANEL 138 (462)
Q Consensus 116 ~-~~~D~vI~D~~~~~~~~vA~~l 138 (462)
+ ..||+||...---.++-+-+.+
T Consensus 63 ~Gf~PDvI~~H~GWGe~Lflkdv~ 86 (171)
T PF12000_consen 63 QGFVPDVIIAHPGWGETLFLKDVF 86 (171)
T ss_pred cCCCCCEEEEcCCcchhhhHHHhC
Confidence 3 4689999997332233344445
No 147
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=79.84 E-value=3.1 Score=33.57 Aligned_cols=40 Identities=18% Similarity=0.017 Sum_probs=26.8
Q ss_pred cEEEEEcCCCcC---CHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 12 AHVAMVPTPGMG---HLIPLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 12 ~~ill~~~p~~G---Hv~P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
|+|+|+--|-.+ .-....+|+.+-++| ||+|.++.+....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~R-Ghev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRR-GHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHT-T-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHC-CCEEEEEEcCcEE
Confidence 678888887633 224578899999888 9999999987543
No 148
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=78.31 E-value=42 Score=28.66 Aligned_cols=102 Identities=14% Similarity=0.057 Sum_probs=59.0
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCC-CCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCch
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTID-DGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVPI 91 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 91 (462)
-|.+++.++.|-....+.+|-+.+.+ |++|.|+-.--- .. ......++.++ ++.+..+........ ..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~-----~gE~~~l~~l~-~v~~~~~g~~~~~~~----~~ 72 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWK-----YGELKALERLP-NIEIHRMGRGFFWTT----EN 72 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCc-----cCHHHHHHhCC-CcEEEECCCCCccCC----CC
Confidence 47788899999999999999999876 999999553211 11 12233444554 677776654322111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcc
Q 012513 92 ETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGS 129 (462)
Q Consensus 92 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~ 129 (462)
.. .........+. ..++.+....+|+||-|-+..
T Consensus 73 ~~---~~~~~a~~~~~-~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 73 DE---EDIAAAAEGWA-FAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred hH---HHHHHHHHHHH-HHHHHHhcCCCCEEEEechHh
Confidence 11 11112222222 223333455899999998654
No 149
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=77.59 E-value=9.7 Score=35.90 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
..+|.+.-.|+.|--.=.-.|.++|.++ ||+|.++....-.
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSS 91 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSS 91 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCC
Confidence 4578888899999999999999999988 9999999865433
No 150
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=77.18 E-value=64 Score=30.15 Aligned_cols=39 Identities=10% Similarity=0.229 Sum_probs=33.6
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcC-CCEEEEEeCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQH-NFLVSIFIPTID 51 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~-GH~Vt~~~~~~~ 51 (462)
||+++-..+.|++.=+..+.++|+++. +-+|++++.+.+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~ 40 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWF 40 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhh
Confidence 588999999999999999999998873 279999998743
No 151
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=77.18 E-value=9.9 Score=32.07 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=21.2
Q ss_pred ccccccC------chhHHHHHHhCCceeeccc
Q 012513 347 GFLSHCG------WNSILESIVHGVPIIAWPL 372 (462)
Q Consensus 347 ~~I~HGG------~~t~~eal~~GvP~v~~P~ 372 (462)
++++|.| .+.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 7788866 3478899999999999964
No 152
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=74.91 E-value=73 Score=29.68 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=51.2
Q ss_pred CceEeccCcc---hhhhhccccccccccc---cCchh-HHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCC
Q 012513 326 VGLVVPSWSP---QVQVLRHGSTGGFLSH---CGWNS-ILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 398 (462)
Q Consensus 326 ~~~~~~~~~p---q~~lL~~~~~~~~I~H---GG~~t-~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~ 398 (462)
+++...+++| ...++..++ +++.- .|.|. +.||+++|+|+|..... .....+.. -+.|. +...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~-~~~g~-~~~~-- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVED-GETGL-LVPP-- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcC-CCceE-ecCC--
Confidence 5666778888 344666676 44444 35544 59999999999766543 22333333 22466 3222
Q ss_pred cccCHHHHHHHHHHHhcCc
Q 012513 399 GLVGREDIANYAKGLIQGE 417 (462)
Q Consensus 399 ~~~~~~~l~~ai~~vl~~~ 417 (462)
...+++.+++..++.+.
T Consensus 327 --~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 --GDVEELADALEQLLEDP 343 (381)
T ss_pred --CCHHHHHHHHHHHhcCH
Confidence 25789999999999874
No 153
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=74.58 E-value=38 Score=32.49 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=42.6
Q ss_pred cchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhh---hHHhhcccceeEEee
Q 012513 334 SPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMN---AVLLTDDLKVSFRVK 394 (462)
Q Consensus 334 ~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~---a~rv~~~~g~G~~~~ 394 (462)
=|+...|..++. ++||---.+=+.||+..|+|+.++|.-.-.... ...+.+ .|.-..+.
T Consensus 220 nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~-~g~~r~~~ 281 (311)
T PF06258_consen 220 NPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEE-RGAVRPFT 281 (311)
T ss_pred CcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHH-CCCEEECC
Confidence 367889999996 788888888999999999999999987621222 233445 45554443
No 154
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=74.24 E-value=14 Score=31.60 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=21.2
Q ss_pred ccccccCch------hHHHHHHhCCceeecc
Q 012513 347 GFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
++++|+|-| .+.+|...++|||++.
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 778888754 7789999999999995
No 155
>PLN02470 acetolactate synthase
Probab=74.05 E-value=8.6 Score=40.61 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=52.2
Q ss_pred EeCCCCCCCH--HHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhh-CCCceEe--cc--
Q 012513 260 CFGSGGTLSQ--EQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT-KGVGLVV--PS-- 332 (462)
Q Consensus 260 s~Gs~~~~~~--~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~--~~-- 332 (462)
+|||-...+. ...+.|++.|+..+...|+-+.++.. ..+.+.+ +.+++.. ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~---------------------~~l~dal~~~~~i~~i~~rhE 60 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS---------------------MEIHQALTRSNCIRNVLCRHE 60 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc---------------------HHHHHHHhccCCceEEEeccH
Confidence 5777533332 23567899999999998988877543 1111111 1112111 10
Q ss_pred ----CcchhhhhccccccccccccCch------hHHHHHHhCCceeecc
Q 012513 333 ----WSPQVQVLRHGSTGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 333 ----~~pq~~lL~~~~~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
++=...-..+-.++++++|.|-| .+.+|.+.++|||++.
T Consensus 61 ~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 61 QGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 11111111123345788888854 7899999999999995
No 156
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=73.00 E-value=7.4 Score=32.34 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
++++|++.+.++-+|-.-..-++..|.++ |++|+++....
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G~eVi~LG~~v 41 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA-GFEVINLGVMT 41 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC-CCEEEECCCCC
Confidence 46789999999999999999999999877 99999998753
No 157
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=72.74 E-value=5 Score=32.88 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=30.2
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
|||++...++.+=.. ...+.++|.++ ||+|.++.++.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECCc
Confidence 588888888866666 99999999887 99999998863
No 158
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=71.74 E-value=6.1 Score=31.74 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=32.0
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
||++.+.++-.|.....-++..|.++ ||+|.++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~-G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA-GFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC-CCEEEECCCC
Confidence 48999999999999999999999877 9999887743
No 159
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=71.64 E-value=17 Score=33.92 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=35.2
Q ss_pred ceEeccCcchhhhhccccccccccccCchhHHHHHHhCCceeeccc
Q 012513 327 GLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL 372 (462)
Q Consensus 327 ~~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~ 372 (462)
.+++..-++-.++|.+++ .+||..+ .+-+||+.+|+|++++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 444556778889999999 7888865 478999999999999874
No 160
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=70.87 E-value=15 Score=38.30 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=47.8
Q ss_pred chhhhhcccccccccc-ccCc-hhHHHHHHhCCceeecccccc-hhhhhHHhhcccceeEEeeecCCc--ccCHHHHHHH
Q 012513 335 PQVQVLRHGSTGGFLS-HCGW-NSILESIVHGVPIIAWPLYSE-QKMNAVLLTDDLKVSFRVKVNENG--LVGREDIANY 409 (462)
Q Consensus 335 pq~~lL~~~~~~~~I~-HGG~-~t~~eal~~GvP~v~~P~~~D-Q~~~a~rv~~~~g~G~~~~~~~~~--~~~~~~l~~a 409 (462)
+..+++..|++.++=+ +=|+ .+++||+++|+|+|+....+= .... ..+..+...|+.+...+.. .-+.++|+++
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~ 545 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQY 545 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHHH
Confidence 3667777788433322 3454 499999999999999886432 1111 1222211256666532210 1246788888
Q ss_pred HHHHhcC
Q 012513 410 AKGLIQG 416 (462)
Q Consensus 410 i~~vl~~ 416 (462)
+.+++..
T Consensus 546 m~~~~~~ 552 (590)
T cd03793 546 MYEFCQL 552 (590)
T ss_pred HHHHhCC
Confidence 9888865
No 161
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=70.56 E-value=51 Score=28.22 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred cccccccCch------hHHHHHHhCCceeecc
Q 012513 346 GGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 346 ~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
+++++|.|-| .+.+|...++|+|++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3778887744 7889999999999997
No 162
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=70.52 E-value=76 Score=28.01 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=61.0
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC-CCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDD-GTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNV 89 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 89 (462)
.-.|.+++.++.|-....+.+|-+.+.+ |++|.++-.---. . ......++..+ ++.+........+..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~~~-----~GE~~~l~~l~-~v~~~~~g~~~~~~~---- 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGAWS-----TGERNLLEFGG-GVEFHVMGTGFTWET---- 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCc-----cCHHHHHhcCC-CcEEEECCCCCcccC----
Confidence 3579999999999999999999999887 9999988742111 1 12223333333 677776654221111
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcc
Q 012513 90 PIETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGS 129 (462)
Q Consensus 90 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~ 129 (462)
.... .........+... ++.+.+..+|+||.|-+..
T Consensus 91 ~~~~---e~~~~~~~~~~~a-~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 QDRE---RDIAAAREGWEEA-KRMLADESYDLVVLDELTY 126 (191)
T ss_pred CCcH---HHHHHHHHHHHHH-HHHHhCCCCCEEEEehhhH
Confidence 1111 1122222233222 2333456899999998654
No 163
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=70.07 E-value=1.1e+02 Score=29.64 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCC--CEEEEEeCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHN--FLVSIFIPTIDDG 53 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~G--H~Vt~~~~~~~~~ 53 (462)
+|+|+++-....|++.=...+-..|+++ . .+++|++++.+.+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~-~P~a~i~~~~~~~~~~ 44 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKA-YPNAKIDVLVPKGFAP 44 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHH-CCCCEEEEEeccchHH
Confidence 5899999999999999999999999887 5 8999999885554
No 164
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=69.76 E-value=57 Score=28.18 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=25.2
Q ss_pred EEEEcCCCcCCHHHHHHHHHHH-HhcCCCEEEEEeCCCCC
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRL-VRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L-~~r~GH~Vt~~~~~~~~ 52 (462)
|+++...+ ||..=|+.|.+.+ .++..++..+++..+..
T Consensus 1 Il~v~gsG-GHt~eml~L~~~~~~~~~~~~~~ivt~~d~~ 39 (170)
T PF08660_consen 1 ILVVLGSG-GHTAEMLRLLKALDNDRYQPRTYIVTEGDKQ 39 (170)
T ss_pred CEEEEcCc-HHHHHHHHHHHHhhhhcCCCcEEEEEcCCcc
Confidence 34555555 9999999999999 44434555555554433
No 165
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=68.37 E-value=11 Score=33.47 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=29.6
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
||||+.==.+. +-.-+..|+++|.+. ||+|+++.|...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~-g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSAL-GHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTT-SSEEEEEEESSSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhc-CCeEEEEeCCCCCc
Confidence 66776655554 556688999999655 89999999987765
No 166
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.42 E-value=1.3e+02 Score=29.33 Aligned_cols=116 Identities=14% Similarity=0.033 Sum_probs=72.2
Q ss_pred CCCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCC
Q 012513 9 IPRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDN 88 (462)
Q Consensus 9 ~~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 88 (462)
.++.|++++..+-.||---|.-=|..|+.. |.+|.++.-....+ .+..+. .++|.++.++....-+..+.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p-------~e~l~~--hprI~ih~m~~l~~~~~~p~ 79 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIP-------LEELLN--HPRIRIHGMPNLPFLQGGPR 79 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCC-------hHHHhc--CCceEEEeCCCCcccCCCch
Confidence 457899999999999999999999999876 99999999765544 223333 34799999986542221111
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-eCCCcchHHHHHHHcCC
Q 012513 89 VPIETRIILTLVRSLSSLRDALKVLTESTRLVALV-VDCFGSAAFDVANELDV 140 (462)
Q Consensus 89 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI-~D~~~~~~~~vA~~lgI 140 (462)
. +...++.....+ .++-.+....++|.++ -++-+.....++.-+++
T Consensus 80 ~-----~~l~lKvf~Qfl-~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~ 126 (444)
T KOG2941|consen 80 V-----LFLPLKVFWQFL-SLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSI 126 (444)
T ss_pred h-----hhhHHHHHHHHH-HHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHH
Confidence 1 111111111211 2233333344677665 56666667777777666
No 167
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=67.30 E-value=51 Score=29.04 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=74.2
Q ss_pred CHHHHH-HHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhcccccc
Q 012513 268 SQEQLN-ELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTG 346 (462)
Q Consensus 268 ~~~~~~-~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~ 346 (462)
+.+.++ +|.+.++..+..+|.-.+.= .-|.+.|.++++++-+= =||+
T Consensus 63 ~r~~~d~~l~~~l~~~~~dlvvLAGyM-------------------rIL~~~fl~~~~grIlN-----------IHPS-- 110 (200)
T COG0299 63 SREAFDRALVEALDEYGPDLVVLAGYM-------------------RILGPEFLSRFEGRILN-----------IHPS-- 110 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcchH-------------------HHcCHHHHHHhhcceEe-----------cCcc--
Confidence 344444 48889988888766655542 22556677666543221 2788
Q ss_pred ccccccCchhHHHHHHhCCceeeccccc-c-hhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHH
Q 012513 347 GFLSHCGWNSILESIVHGVPIIAWPLYS-E-QKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRK 424 (462)
Q Consensus 347 ~~I~HGG~~t~~eal~~GvP~v~~P~~~-D-Q~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~ 424 (462)
+.=.++|..+..+|+.+|+..-++-+.+ | .-+-+--+.+ ..+.+... =|.|+|.+.|.+.-. .-|-+
T Consensus 111 LLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q---~~Vpv~~~----Dt~etl~~RV~~~Eh----~lyp~ 179 (200)
T COG0299 111 LLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQ---AAVPVLPG----DTAETLEARVLEQEH----RLYPL 179 (200)
T ss_pred cccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEE---EeeeecCC----CCHHHHHHHHHHHHH----HHHHH
Confidence 7888999999999999999987776433 3 2222222222 11222222 278888888877632 35666
Q ss_pred HHHHHHHH
Q 012513 425 KMRALKDA 432 (462)
Q Consensus 425 ~a~~l~~~ 432 (462)
..+.+.+.
T Consensus 180 ~v~~~~~g 187 (200)
T COG0299 180 AVKLLAEG 187 (200)
T ss_pred HHHHHHhC
Confidence 66655543
No 168
>PRK06849 hypothetical protein; Provisional
Probab=66.58 E-value=30 Score=34.34 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
.+|+|++....+ .--+.+++.|.++ ||+|.++....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~-G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNA-GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 467888875333 3578999999887 99999987653
No 169
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=65.92 E-value=47 Score=28.02 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=71.0
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcc
Q 012513 256 VLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSP 335 (462)
Q Consensus 256 ~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~p 335 (462)
.|.|=+||. .+.+..+++...|+..+..+-..+.+... .|+.+.+- +.
T Consensus 2 ~V~Ii~gs~--SD~~~~~~a~~~L~~~gi~~~~~V~saHR-------------------~p~~l~~~-----------~~ 49 (150)
T PF00731_consen 2 KVAIIMGST--SDLPIAEEAAKTLEEFGIPYEVRVASAHR-------------------TPERLLEF-----------VK 49 (150)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTT-EEEEEE--TTT-------------------SHHHHHHH-----------HH
T ss_pred eEEEEeCCH--HHHHHHHHHHHHHHHcCCCEEEEEEeccC-------------------CHHHHHHH-----------HH
Confidence 456667774 46778899999999999877666555332 33332211 11
Q ss_pred hhhhhccccccccccccCch----hHHHHHHhCCceeecccccchhhhh----HHhhcccceeEEeeecCCcccCHHHHH
Q 012513 336 QVQVLRHGSTGGFLSHCGWN----SILESIVHGVPIIAWPLYSEQKMNA----VLLTDDLKVSFRVKVNENGLVGREDIA 407 (462)
Q Consensus 336 q~~lL~~~~~~~~I~HGG~~----t~~eal~~GvP~v~~P~~~DQ~~~a----~rv~~~~g~G~~~~~~~~~~~~~~~l~ 407 (462)
. +.+..+++||.=.|.. ++..++. -.|+|.+|....+.... ..++--.|+++..-.- ++..+..-++
T Consensus 50 ~---~~~~~~~viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A 124 (150)
T PF00731_consen 50 E---YEARGADVIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLA 124 (150)
T ss_dssp H---TTTTTESEEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHH
T ss_pred H---hccCCCEEEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHH
Confidence 0 1111122567666654 3444444 68999999887754321 2222212454332110 0113444455
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 012513 408 NYAKGLIQGEEGKLLRKKMRALKDAAAN 435 (462)
Q Consensus 408 ~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 435 (462)
-.|..+ .| +.++++.+..++.+++
T Consensus 125 ~~ILa~-~d---~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 125 ARILAL-KD---PELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHT-T----HHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CC---HHHHHHHHHHHHHHHc
Confidence 444444 35 4888888888888775
No 170
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=65.82 E-value=1.3e+02 Score=28.93 Aligned_cols=38 Identities=11% Similarity=0.300 Sum_probs=33.3
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcC-CCEEEEEeCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQH-NFLVSIFIPTI 50 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~-GH~Vt~~~~~~ 50 (462)
||+++-..+.|++.=...+.+.|++.. +.+|+|++.+.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~ 39 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAW 39 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechh
Confidence 589999999999999999999998764 68999999763
No 171
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=65.27 E-value=9.3 Score=39.07 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=28.3
Q ss_pred cEEEEEcCCC------cCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 12 AHVAMVPTPG------MGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 12 ~~ill~~~p~------~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
|||+++++-. -|=-.-.-.|+++|+++ ||+|.+++|..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~-G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAAL-GHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 6888888642 22234467899999887 99999999753
No 172
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.04 E-value=11 Score=35.28 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=38.9
Q ss_pred cccccccccccCchhHHHHHH------hCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhc
Q 012513 342 HGSTGGFLSHCGWNSILESIV------HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQ 415 (462)
Q Consensus 342 ~~~~~~~I~HGG~~t~~eal~------~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~ 415 (462)
.++ ++|+-||=||++.|+. .++|++.+-.. .+|..- + +.++++.++++++++
T Consensus 35 ~~D--lvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~---~---~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPD--IVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT---D---WRPFEVDKLVIALAK 92 (265)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc---c---CCHHHHHHHHHHHHc
Confidence 456 8999999999999986 47888776642 223222 2 667888888888887
Q ss_pred C
Q 012513 416 G 416 (462)
Q Consensus 416 ~ 416 (462)
+
T Consensus 93 g 93 (265)
T PRK04885 93 D 93 (265)
T ss_pred C
Confidence 6
No 173
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=64.63 E-value=13 Score=36.50 Aligned_cols=113 Identities=12% Similarity=0.175 Sum_probs=65.1
Q ss_pred ceEe-ccCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCc--ccCH
Q 012513 327 GLVV-PSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG--LVGR 403 (462)
Q Consensus 327 ~~~~-~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~--~~~~ 403 (462)
+++. .+..+-.++|..++ ++||--. ..+.|.+..++|+|....-.|.+... .|.-......-.| .-+.
T Consensus 253 ~i~~~~~~~~~~~ll~~aD--iLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~~~ 323 (369)
T PF04464_consen 253 NIIFVSDNEDIYDLLAAAD--ILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVYNF 323 (369)
T ss_dssp TEEE-TT-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EESSH
T ss_pred cEEECCCCCCHHHHHHhcC--EEEEech-hHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeCCH
Confidence 4443 45556789999999 8999874 58899999999999877655555211 2222221111011 2367
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 012513 404 EDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVA 451 (462)
Q Consensus 404 ~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 451 (462)
++|.++|..++.++ ..++++.+++.+.+-.. .-|.++.+-++.++
T Consensus 324 ~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~~-~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 324 EELIEAIENIIENP--DEYKEKREKFRDKFFKY-NDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHTTHHHHH--HHTHHHHHHHHHHHSTT---S-HHHHHHHHHH
T ss_pred HHHHHHHHhhhhCC--HHHHHHHHHHHHHhCCC-CCchHHHHHHHHHh
Confidence 89999999988764 45666677777776542 12555555555444
No 174
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=64.59 E-value=42 Score=28.67 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=21.3
Q ss_pred ccccccccCch------hHHHHHHhCCceeeccc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWPL 372 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P~ 372 (462)
.+++++|.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33666766644 77899999999999963
No 175
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=63.66 E-value=8.9 Score=32.39 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 22 MGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 22 ~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-|=-.-...|+++|+++ ||+|+++++....+
T Consensus 12 GG~e~~~~~l~~~l~~~-G~~v~v~~~~~~~~ 42 (177)
T PF13439_consen 12 GGAERVVLNLARALAKR-GHEVTVVSPGVKDP 42 (177)
T ss_dssp SHHHHHHHHHHHHHHHT-T-EEEEEESS-TTS
T ss_pred ChHHHHHHHHHHHHHHC-CCEEEEEEcCCCcc
Confidence 35556789999999988 99999998874443
No 176
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=63.13 E-value=15 Score=38.61 Aligned_cols=27 Identities=11% Similarity=0.501 Sum_probs=22.2
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33788888855 6889999999999985
No 177
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=62.75 E-value=11 Score=35.87 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=40.4
Q ss_pred hhhccccccccccccCchhHHHHHHh----CCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHH
Q 012513 338 QVLRHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGL 413 (462)
Q Consensus 338 ~lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~v 413 (462)
++-..++ ++|+-||-||+++++.. ++|++.+-.. .+|... + ++.+++.++|.++
T Consensus 59 ~~~~~~d--~vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~---~---~~~~~~~~~l~~~ 116 (291)
T PRK02155 59 EIGARAD--LAVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT---D---IPLDDMQETLPPM 116 (291)
T ss_pred HhccCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc---c---CCHHHHHHHHHHH
Confidence 3334566 89999999999999774 6777665532 223322 2 6778899999999
Q ss_pred hcC
Q 012513 414 IQG 416 (462)
Q Consensus 414 l~~ 416 (462)
+++
T Consensus 117 ~~g 119 (291)
T PRK02155 117 LAG 119 (291)
T ss_pred HcC
Confidence 876
No 178
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=62.61 E-value=48 Score=29.97 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=31.5
Q ss_pred cEEEEEcC--CCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 12 AHVAMVPT--PGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~--p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
.+|.+++. ++.|-......|+-.|+.+ |+.|.++-..
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~-GkKv~liD~D 40 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQL-GKKVVLIDFD 40 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHc-CCeEEEEecC
Confidence 35777777 4889999999999999988 9999988754
No 179
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=61.76 E-value=55 Score=31.58 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=34.2
Q ss_pred CcEEEEEcC-CCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 11 RAHVAMVPT-PGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 11 ~~~ill~~~-p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
++||+|++. ++.|--.-..++|-.|++. |+.|.++++.....
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDPAhs 43 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDPAHS 43 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeCCCCc
Confidence 357888887 8999999999999999987 99888887765443
No 180
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=60.15 E-value=18 Score=28.83 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=32.6
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
.|+++.+.+..-|-.-+..++..|.++ ||+|.++...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~-G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKA-GHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHC-CCeEEEECCC
Confidence 378999999999999999999999887 9999988654
No 181
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=59.86 E-value=31 Score=34.83 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=21.6
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| .+.+|.+.++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 33777887744 7889999999999993
No 182
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=59.72 E-value=36 Score=32.67 Aligned_cols=134 Identities=16% Similarity=0.019 Sum_probs=73.7
Q ss_pred EE-EEEeCCC--CCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEecc
Q 012513 256 VL-FVCFGSG--GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPS 332 (462)
Q Consensus 256 ~v-~vs~Gs~--~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ 332 (462)
.| ++-.||. ...+.+.+.++++.+...+.++++..++...+ ..-+...+. .+++.+.+
T Consensus 180 ~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~-----------------~~~~~i~~~--~~~~~l~g 240 (322)
T PRK10964 180 YLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEE-----------------QRAKRLAEG--FPYVEVLP 240 (322)
T ss_pred eEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHH-----------------HHHHHHHcc--CCcceecC
Confidence 44 3444443 34778889999998877677765544432210 000111110 01222222
Q ss_pred C--cch-hhhhccccccccccccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEee--ecCCcccCHHHHH
Q 012513 333 W--SPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK--VNENGLVGREDIA 407 (462)
Q Consensus 333 ~--~pq-~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~--~~~~~~~~~~~l~ 407 (462)
- +.+ .+++.+++ +||+.- .|.++=|.+.|+|+|++=-..|...++-.-.. ..... ..--..+++|++.
T Consensus 241 ~~sL~elaali~~a~--l~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~----~~~~~~~~~cm~~I~~e~V~ 313 (322)
T PRK10964 241 KLSLEQVARVLAGAK--AVVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKN----QHACRSPGKSMADLSAETVF 313 (322)
T ss_pred CCCHHHHHHHHHhCC--EEEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCC----ceeecCCCcccccCCHHHHH
Confidence 2 233 77888999 899874 58999999999999987433333222211100 00111 0001138999999
Q ss_pred HHHHHHhc
Q 012513 408 NYAKGLIQ 415 (462)
Q Consensus 408 ~ai~~vl~ 415 (462)
++++++++
T Consensus 314 ~~~~~~l~ 321 (322)
T PRK10964 314 QKLETLIS 321 (322)
T ss_pred HHHHHHhh
Confidence 99988763
No 183
>PRK08322 acetolactate synthase; Reviewed
Probab=59.37 E-value=21 Score=37.38 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=22.0
Q ss_pred ccccccccCc------hhHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGW------NSILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~------~t~~eal~~GvP~v~~P 371 (462)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3377888774 48899999999999985
No 184
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=59.27 E-value=1.3e+02 Score=26.75 Aligned_cols=117 Identities=8% Similarity=-0.051 Sum_probs=62.1
Q ss_pred eEeccCcchhhhhccccccccccccCchhHHHHHH----hCCceeecccccchhhhhH-----HhhcccceeEEeeecCC
Q 012513 328 LVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIV----HGVPIIAWPLYSEQKMNAV-----LLTDDLKVSFRVKVNEN 398 (462)
Q Consensus 328 ~~~~~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~----~GvP~v~~P~~~DQ~~~a~-----rv~~~~g~G~~~~~~~~ 398 (462)
+.......+..-+..++ ++|.--+--.+.+.++ .++++-+ .|.+..+. .+.+ -++-+.+.+...
T Consensus 56 i~~~~~~~~~~~l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~-g~l~iaIsT~G~ 128 (202)
T PRK06718 56 IRWKQKEFEPSDIVDAF--LVIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHR-GKLTISVSTDGA 128 (202)
T ss_pred EEEEecCCChhhcCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEc-CCeEEEEECCCC
Confidence 33333344455667777 6777666666655554 4555544 34433322 2333 233344443321
Q ss_pred cccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 012513 399 GLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQ 452 (462)
Q Consensus 399 ~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 452 (462)
...-+..|++.|...+ .++...+-+.+.++++.+++.+......+..++.+++
T Consensus 129 sP~la~~lr~~ie~~~-~~~~~~~~~~~~~~R~~~k~~~~~~~~R~~~~~~~~~ 181 (202)
T PRK06718 129 SPKLAKKIRDELEALY-DESYESYIDFLYECRQKIKELQIEKREKQILLQEVLS 181 (202)
T ss_pred ChHHHHHHHHHHHHHc-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 1233456788887777 3334567778888888888654333333345555553
No 185
>PRK14098 glycogen synthase; Provisional
Probab=58.20 E-value=13 Score=38.24 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCC------cCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 10 PRAHVAMVPTPG------MGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 10 ~~~~ill~~~p~------~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
++|+|++++.=. -|=-.-+-.|.++|+++ ||+|.++.|-
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~-g~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEE-GFEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 459999987522 22234467899999887 9999999985
No 186
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.97 E-value=73 Score=31.81 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
+..|+|+-..+.|-..-+..||..|..+ |+.|.+++...++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCCcc
Confidence 3578888889999999999999999887 9999999986554
No 187
>PLN02929 NADH kinase
Probab=57.87 E-value=8.3 Score=36.64 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=43.3
Q ss_pred ccccccccccccCchhHHHHHH---hCCceeecccccch------hhhhHHhhcccceeEEeeecCCcccCHHHHHHHHH
Q 012513 341 RHGSTGGFLSHCGWNSILESIV---HGVPIIAWPLYSEQ------KMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAK 411 (462)
Q Consensus 341 ~~~~~~~~I~HGG~~t~~eal~---~GvP~v~~P~~~DQ------~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~ 411 (462)
..++ ++|+-||-||++.|.. .++|++.+-....| +.+... +. .-+|..-. ++.+++.++++
T Consensus 63 ~~~D--lvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~~------~~~~~~~~~L~ 132 (301)
T PLN02929 63 RDVD--LVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLCA------ATAEDFEQVLD 132 (301)
T ss_pred CCCC--EEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCcccccc------CCHHHHHHHHH
Confidence 3456 8999999999999854 47898887654211 111111 11 12443322 67899999999
Q ss_pred HHhcC
Q 012513 412 GLIQG 416 (462)
Q Consensus 412 ~vl~~ 416 (462)
+++++
T Consensus 133 ~il~g 137 (301)
T PLN02929 133 DVLFG 137 (301)
T ss_pred HHHcC
Confidence 99987
No 188
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.31 E-value=17 Score=34.36 Aligned_cols=57 Identities=9% Similarity=0.210 Sum_probs=39.8
Q ss_pred hhhccccccccccccCchhHHHHHHh----CCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHH
Q 012513 338 QVLRHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGL 413 (462)
Q Consensus 338 ~lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~v 413 (462)
.+...++ ++|+-||-||++.|... ++|++.+-.. .+|.. .+ ++.+++.++++++
T Consensus 60 ~~~~~~D--lvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL---t~---~~~~~~~~~l~~i 117 (287)
T PRK14077 60 ELFKISD--FLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFL---TD---ITVDEAEKFFQAF 117 (287)
T ss_pred hcccCCC--EEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccC---Cc---CCHHHHHHHHHHH
Confidence 3334567 89999999999988663 6787665532 12322 12 6778899999998
Q ss_pred hcC
Q 012513 414 IQG 416 (462)
Q Consensus 414 l~~ 416 (462)
+.+
T Consensus 118 ~~g 120 (287)
T PRK14077 118 FQG 120 (287)
T ss_pred HcC
Confidence 876
No 189
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=57.12 E-value=29 Score=36.63 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.0
Q ss_pred ccccccccCc------hhHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGW------NSILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~------~t~~eal~~GvP~v~~P 371 (462)
.+++++|.|- +.+.+|.+.++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3378888774 48899999999999984
No 190
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.96 E-value=20 Score=34.27 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=42.1
Q ss_pred hhccccccccccccCchhHHHHHHh----CCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHh
Q 012513 339 VLRHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLI 414 (462)
Q Consensus 339 lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl 414 (462)
+...++ ++|+=||-||++.|... ++|++.+... .+|.... +..+++.+++++++
T Consensus 69 ~~~~~D--~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~ 126 (306)
T PRK03372 69 AADGCE--LVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLAE------AEAEDLDEAVERVV 126 (306)
T ss_pred cccCCC--EEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceecc------CCHHHHHHHHHHHH
Confidence 334567 89999999999999764 7888877653 2333322 67789999999999
Q ss_pred cCc
Q 012513 415 QGE 417 (462)
Q Consensus 415 ~~~ 417 (462)
+++
T Consensus 127 ~g~ 129 (306)
T PRK03372 127 DRD 129 (306)
T ss_pred cCC
Confidence 873
No 191
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=56.62 E-value=69 Score=29.58 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 23 GHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 23 GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
=|.-=+..|++.|. . +++|+++.|...+.
T Consensus 11 i~a~Gi~aL~~al~-~-~~dV~VVAP~~~qS 39 (252)
T COG0496 11 IHAPGIRALARALR-E-GADVTVVAPDREQS 39 (252)
T ss_pred cCCHHHHHHHHHHh-h-CCCEEEEccCCCCc
Confidence 35555888999996 6 99999999987766
No 192
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=56.34 E-value=53 Score=29.87 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=33.0
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++...|+.|=-.-.+.++..++.++|+.|.|++.+....
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~ 55 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKE 55 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHH
Confidence 36667778889999999999888765599999999886443
No 193
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=55.17 E-value=29 Score=31.67 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=51.7
Q ss_pred CeEEEEEeCCC---CCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEe
Q 012513 254 ESVLFVCFGSG---GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVV 330 (462)
Q Consensus 254 ~~~v~vs~Gs~---~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~ 330 (462)
++.|.+..|+. ...+.+.+.++++.|.+.+..+++ +++... .....-+......+.+.+.+
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl-~g~~~~---------------~~~~~~~~~~~~~~~~~~~~ 168 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVL-LGGPEE---------------QEKEIADQIAAGLQNPVINL 168 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE---SSHH---------------HHHHHHHHHHTTHTTTTEEE
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEE-EccchH---------------HHHHHHHHHHHhcccceEee
Confidence 45777777774 456778899999999887755443 333221 00000000011111123333
Q ss_pred ccCcc---hhhhhccccccccccccCchhHHHHHHhCCceeec
Q 012513 331 PSWSP---QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW 370 (462)
Q Consensus 331 ~~~~p---q~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~ 370 (462)
.+-.+ ..+++.+++ ++|+. -.|.++=|.+.|+|+|++
T Consensus 169 ~~~~~l~e~~ali~~a~--~~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 169 AGKTSLRELAALISRAD--LVIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TTTS-HHHHHHHHHTSS--EEEEE-SSHHHHHHHHTT--EEEE
T ss_pred cCCCCHHHHHHHHhcCC--EEEec-CChHHHHHHHHhCCEEEE
Confidence 33222 367888899 78887 458999999999999998
No 194
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=55.10 E-value=81 Score=26.90 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=25.5
Q ss_pred EEEcCCCcCCHHH-HHHHHHHHHhcCCCEEEEEeCCC
Q 012513 15 AMVPTPGMGHLIP-LAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 15 ll~~~p~~GHv~P-~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
..+.+...+.+.. +-.+|.+|+++ |++|.=++...
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~-G~rv~G~vQ~~ 37 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRAR-GVRVAGLVQRN 37 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccc
Confidence 3455555577776 45799999988 99998777553
No 195
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=55.02 E-value=38 Score=35.54 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=21.3
Q ss_pred cccccccCch------hHHHHHHhCCceeecc
Q 012513 346 GGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 346 ~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
+++++|.|-| ++.+|...++|+|++.
T Consensus 78 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 78 AVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3677777744 7899999999999985
No 196
>PLN02316 synthase/transferase
Probab=55.01 E-value=21 Score=40.08 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=30.8
Q ss_pred CCCcEEEEEcC---C--CcCCHHH-HHHHHHHHHhcCCCEEEEEeCCC
Q 012513 9 IPRAHVAMVPT---P--GMGHLIP-LAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 9 ~~~~~ill~~~---p--~~GHv~P-~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
.++|||++++. | -.|-+.- .-.|+++|+++ ||+|.+++|..
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~-Gh~V~VitP~Y 631 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDL-NHNVDIILPKY 631 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHc-CCEEEEEecCC
Confidence 35799999985 2 1344433 57899999987 99999999964
No 197
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=54.97 E-value=1.6e+02 Score=30.23 Aligned_cols=110 Identities=10% Similarity=0.033 Sum_probs=70.9
Q ss_pred eEeccCcchhhh---hcccccccccc--ccCchhH-HHHHHhCC----ceeecccccchhhhhHHhhcccceeEEeeecC
Q 012513 328 LVVPSWSPQVQV---LRHGSTGGFLS--HCGWNSI-LESIVHGV----PIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 397 (462)
Q Consensus 328 ~~~~~~~pq~~l---L~~~~~~~~I~--HGG~~t~-~eal~~Gv----P~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~ 397 (462)
+++.+.+|+.++ +.-++| ++|| .-|+|-+ .|.++++. |+|.--+.+= .+. +.-++.++.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa-------a~~-l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA-------AVE-LKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccccc-------hhh-cCCCEEECC--
Confidence 455678887664 445775 4554 4588855 59999987 5444433321 133 444566653
Q ss_pred CcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcC
Q 012513 398 NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKNP 457 (462)
Q Consensus 398 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 457 (462)
...++++++|.++|+.+. ++-++|.+++.+.++. -....=.+.++++|+.-
T Consensus 433 ---~d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred ---CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 678999999999999753 3456667777766663 34556677788777654
No 198
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.65 E-value=15 Score=34.80 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=41.4
Q ss_pred hhhccccccccccccCchhHHHHHHh----CCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHH
Q 012513 338 QVLRHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGL 413 (462)
Q Consensus 338 ~lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~v 413 (462)
.+...++ ++|+=||=||++.|... ++|++.+-.. .+|..- + +.++++.++++++
T Consensus 60 ~~~~~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt---~---~~~~~~~~~l~~i 117 (292)
T PRK01911 60 ELDGSAD--MVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLA---T---VSKEEIEETIDEL 117 (292)
T ss_pred hcccCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCccc---c---cCHHHHHHHHHHH
Confidence 3444567 89999999999999873 7788776543 123222 1 6788999999999
Q ss_pred hcC
Q 012513 414 IQG 416 (462)
Q Consensus 414 l~~ 416 (462)
+++
T Consensus 118 ~~g 120 (292)
T PRK01911 118 LNG 120 (292)
T ss_pred HcC
Confidence 987
No 199
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=54.25 E-value=27 Score=29.74 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=28.7
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeC
Q 012513 256 VLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKS 292 (462)
Q Consensus 256 ~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~ 292 (462)
.+|+|+||........++..+++|...+.--++..++
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~S~ 39 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAVSP 39 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEecc
Confidence 7999999987777777899999998887643554443
No 200
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.07 E-value=49 Score=31.51 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=39.4
Q ss_pred cccccccccccCchhHHHHHH----hCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcC
Q 012513 342 HGSTGGFLSHCGWNSILESIV----HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 342 ~~~~~~~I~HGG~~t~~eal~----~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~ 416 (462)
.++ ++|+=||-||+++++. .++|++.+... .+|.. .+ +..+++.++|++++++
T Consensus 62 ~~d--~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl---~~---~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCD--LVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL---TD---IRPDELEFKLAEVLDG 118 (295)
T ss_pred CCC--EEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc---cc---CCHHHHHHHHHHHHcC
Confidence 456 8999999999999975 36788776642 12322 12 6789999999999976
No 201
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=53.95 E-value=59 Score=30.22 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=32.8
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
.+++...|+.|--.-...++..++..+|+.|.|++.+...
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~ 71 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPV 71 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCH
Confidence 4667777899999999999999865459999999987543
No 202
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=52.89 E-value=1.7e+02 Score=28.40 Aligned_cols=43 Identities=7% Similarity=0.124 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcC-CCEEEEEeCCCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQH-NFLVSIFIPTIDD 52 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~-GH~Vt~~~~~~~~ 52 (462)
.+|||+++-....|++.=...+.+.|.++. +.+|++++.+.+.
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~ 47 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTI 47 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChH
Confidence 367899999999999999999999998764 6899999987444
No 203
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=52.29 E-value=27 Score=25.74 Aligned_cols=37 Identities=22% Similarity=0.107 Sum_probs=31.7
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
.-++++..+.-.|..-+..+|+.|.++ |+.|...-..
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~D~r 52 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAYDHR 52 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEECCC
Confidence 568899999999999999999999887 9998865543
No 204
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.91 E-value=33 Score=32.68 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=41.5
Q ss_pred hhhccccccccccccCchhHHHHHH----hCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHH
Q 012513 338 QVLRHGSTGGFLSHCGWNSILESIV----HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGL 413 (462)
Q Consensus 338 ~lL~~~~~~~~I~HGG~~t~~eal~----~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~v 413 (462)
.+...++ ++|+=||=||++.|.. .++|++.+-.. .+|..-. ++.+++.++++++
T Consensus 64 ~~~~~~D--~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i 121 (296)
T PRK04539 64 ELGQYCD--LVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLTQ------IPREYMTDKLLPV 121 (296)
T ss_pred hcCcCCC--EEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEeec------cCHHHHHHHHHHH
Confidence 3334567 8999999999999975 37888776532 1333322 6788999999999
Q ss_pred hcC
Q 012513 414 IQG 416 (462)
Q Consensus 414 l~~ 416 (462)
+++
T Consensus 122 ~~g 124 (296)
T PRK04539 122 LEG 124 (296)
T ss_pred HcC
Confidence 876
No 205
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=51.82 E-value=2.3e+02 Score=27.23 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=54.5
Q ss_pred eEeccCcc---hhhhhccccccccccc--cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccC
Q 012513 328 LVVPSWSP---QVQVLRHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVG 402 (462)
Q Consensus 328 ~~~~~~~p---q~~lL~~~~~~~~I~H--GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~ 402 (462)
.++.+++| +.++|..|+++.|+|+ =|.||+.-.+..|+|+++-- +-+.|....++ |+-+-...+. ++
T Consensus 209 ~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~e~--gv~Vlf~~d~---L~ 280 (322)
T PRK02797 209 QILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLTEQ--GLPVLFTGDD---LD 280 (322)
T ss_pred EehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHHhC--CCeEEecCCc---cc
Confidence 44567777 5789999999888886 48999999999999998753 33555554444 6655545554 77
Q ss_pred HHHHHHHHHH
Q 012513 403 REDIANYAKG 412 (462)
Q Consensus 403 ~~~l~~ai~~ 412 (462)
...+.++=++
T Consensus 281 ~~~v~e~~rq 290 (322)
T PRK02797 281 EDIVREAQRQ 290 (322)
T ss_pred HHHHHHHHHH
Confidence 7666665333
No 206
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.75 E-value=17 Score=34.73 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=40.0
Q ss_pred ccccccccccccCchhHHHHHHh----CCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcC
Q 012513 341 RHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 341 ~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~ 416 (462)
..++ ++|+=||=||++.|... ++|++.+-.. .+|.. .+ ++.+++.+++++++++
T Consensus 67 ~~~D--lvi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFL---t~---~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMK--FAIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFL---TE---AYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcC--EEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCccc---cc---CCHHHHHHHHHHHHcC
Confidence 3466 99999999999999774 7788776532 12222 12 6778999999999887
Q ss_pred c
Q 012513 417 E 417 (462)
Q Consensus 417 ~ 417 (462)
+
T Consensus 125 ~ 125 (305)
T PRK02649 125 Q 125 (305)
T ss_pred C
Confidence 3
No 207
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=51.54 E-value=1.2e+02 Score=28.84 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=68.9
Q ss_pred HHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccC
Q 012513 274 ELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCG 353 (462)
Q Consensus 274 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG 353 (462)
++++.++..+..+++..+...- +|+.+.+..+.+-+ ==||+ +.=.+.|
T Consensus 156 ~~~~~l~~~~~Dlivlagy~~i-------------------l~~~~l~~~~~~ii-----------NiHpS--LLP~~rG 203 (286)
T PRK13011 156 QVLDVVEESGAELVVLARYMQV-------------------LSPELCRKLAGRAI-----------NIHHS--FLPGFKG 203 (286)
T ss_pred HHHHHHHHhCcCEEEEeChhhh-------------------CCHHHHhhccCCeE-----------Eeccc--cCCCCCC
Confidence 3566666666777776665432 66766655443222 12555 5556679
Q ss_pred chhHHHHHHhCCceeeccccc--chhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012513 354 WNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 430 (462)
Q Consensus 354 ~~t~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~ 430 (462)
.+.+..|+.+|+..-++-++. +..+-+.-+.+ .-+.+... -|.++|.+.+.++-. .-|-+..+.+.
T Consensus 204 ~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q---~~v~I~~~----dt~~~L~~r~~~~E~----~~~~~ai~~~~ 271 (286)
T PRK13011 204 AKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQ---DVERVDHA----YSPEDLVAKGRDVEC----LTLARAVKAHI 271 (286)
T ss_pred CcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEE---EEEEcCCC----CCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 999999999999998887543 22333333333 12223333 488899998888643 25655555554
No 208
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=51.32 E-value=1.1e+02 Score=28.90 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=67.9
Q ss_pred HHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccC
Q 012513 274 ELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCG 353 (462)
Q Consensus 274 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG 353 (462)
++++.++..+..+++..+...- +|+.|.++.+.+-+= =||+ +.=...|
T Consensus 160 ~~~~~l~~~~~Dlivlagym~i-------------------l~~~~l~~~~~~iiN-----------iHpS--lLP~f~G 207 (289)
T PRK13010 160 QILDLIETSGAELVVLARYMQV-------------------LSDDLSRKLSGRAIN-----------IHHS--FLPGFKG 207 (289)
T ss_pred HHHHHHHHhCCCEEEEehhhhh-------------------CCHHHHhhccCCcee-----------eCcc--cCCCCCC
Confidence 3566666666777776665332 666666554432221 2455 4445569
Q ss_pred chhHHHHHHhCCceeeccccc--chhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012513 354 WNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 430 (462)
Q Consensus 354 ~~t~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~ 430 (462)
.+....|+.+|+...++-++. +..+.+.-+.+ . -+.+... -|.++|.+.+.++... -|-+..+.+.
T Consensus 208 ~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q-~--~v~V~~~----dt~e~L~~r~~~~E~~----~l~~ai~~~~ 275 (289)
T PRK13010 208 ARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQ-D--VERVDHS----YSPEDLVAKGRDVECL----TLARAVKAFI 275 (289)
T ss_pred CCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEE-E--EEEcCCC----CCHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 999999999999998888543 33344444433 1 2222223 4788888888876532 5555555544
No 209
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=50.09 E-value=25 Score=31.20 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCcCCHHH-HHHHHHHHHhcCCCEEEEEeCCC
Q 012513 11 RAHVAMVPTPGMGHLIP-LAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P-~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
.+||++.-.++ ....- ...|.++|.++ ||+|.++.++.
T Consensus 5 ~k~IllgVTGs-iaa~k~a~~lir~L~k~-G~~V~vv~T~a 43 (196)
T PRK08305 5 GKRIGFGLTGS-HCTYDEVMPEIEKLVDE-GAEVTPIVSYT 43 (196)
T ss_pred CCEEEEEEcCH-HHHHHHHHHHHHHHHhC-cCEEEEEECHh
Confidence 45777777776 44555 79999999887 99999998763
No 210
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=49.22 E-value=31 Score=35.24 Aligned_cols=55 Identities=11% Similarity=0.206 Sum_probs=40.1
Q ss_pred ccccccccccccCchhHHHHHHh----CCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcC
Q 012513 341 RHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 341 ~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~ 416 (462)
..++ ++|+=||=||++.|... ++|++.+-.. .+|.. .+ +..+++.++|.+++++
T Consensus 261 ~~~D--lVIsiGGDGTlL~Aar~~~~~~iPILGIN~G--------------~LGFL---t~---i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVD--LVITLGGDGTVLWAASMFKGPVPPVVPFSMG--------------SLGFM---TP---FHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------Cccee---cc---cCHHHHHHHHHHHHcC
Confidence 4566 99999999999999774 5677655321 24443 22 7889999999999887
Q ss_pred c
Q 012513 417 E 417 (462)
Q Consensus 417 ~ 417 (462)
+
T Consensus 319 ~ 319 (508)
T PLN02935 319 P 319 (508)
T ss_pred C
Confidence 3
No 211
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=49.19 E-value=86 Score=31.41 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=38.1
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
++-.|+++-.=+.|-....-.||+.|..+ |+.|.+++...+++
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~Rp 141 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRP 141 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCCh
Confidence 34568888888999999999999999986 99999999998887
No 212
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=48.87 E-value=60 Score=31.45 Aligned_cols=98 Identities=11% Similarity=0.166 Sum_probs=59.7
Q ss_pred CeEEEEEeCCC---CCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceE-
Q 012513 254 ESVLFVCFGSG---GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLV- 329 (462)
Q Consensus 254 ~~~v~vs~Gs~---~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~- 329 (462)
++.|.+.-|+. ...+.+.+.++++.|...+.++++.-+....+ ..+-+...+..+..+++
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e----------------~~~~~~i~~~~~~~~~~~ 244 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDE----------------LAMVNEIAQGCQTPRVTS 244 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHH----------------HHHHHHHHhhCCCCcccc
Confidence 34677777774 44677889999998877677765543221110 00001111111111221
Q ss_pred eccCc--c-hhhhhccccccccccccCchhHHHHHHhCCceeec
Q 012513 330 VPSWS--P-QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW 370 (462)
Q Consensus 330 ~~~~~--p-q~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~ 370 (462)
+.+-. . -.+++.+++ +||+. -.|.++=|.+.|+|+|++
T Consensus 245 l~g~~sL~el~ali~~a~--l~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 245 LAGKLTLPQLAALIDHAR--LFIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred cCCCCCHHHHHHHHHhCC--EEEec-CCHHHHHHHHcCCCEEEE
Confidence 22332 2 377888999 89998 779999999999999987
No 213
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=48.84 E-value=49 Score=28.79 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=24.1
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCE--EEEEeCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFL--VSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~--Vt~~~~~ 49 (462)
|||+|+..++. ..+..+.++|.++ +|+ +..+.+.
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~-~~~~~iv~Vit~ 36 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKAR-GHNVEIVLVITN 36 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTT-SSEEEEEEEEES
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhC-CCCceEEEEecc
Confidence 78888866653 5677788899887 997 5444444
No 214
>PRK05858 hypothetical protein; Provisional
Probab=48.70 E-value=44 Score=34.94 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=20.8
Q ss_pred ccccccC------chhHHHHHHhCCceeecc
Q 012513 347 GFLSHCG------WNSILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG------~~t~~eal~~GvP~v~~P 371 (462)
+++.|.| .+.+++|...++|+|++.
T Consensus 70 v~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 70 VAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 6777777 448899999999999986
No 215
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=48.55 E-value=38 Score=33.26 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=53.2
Q ss_pred CCceeecccccchhhhhHHhhcccceeEE--e-eecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCC
Q 012513 364 GVPIIAWPLYSEQKMNAVLLTDDLKVSFR--V-KVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPD 440 (462)
Q Consensus 364 GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~--~-~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~ 440 (462)
|||+|-+-|-.|-......-+...|.|.. + -.++.+.+++|+|.+-|++.- .+.+.-+.+++.+.
T Consensus 500 GvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAe------kFAeeDk~~Kekie------ 567 (663)
T KOG0100|consen 500 GVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAE------KFAEEDKKLKEKIE------ 567 (663)
T ss_pred CCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHH------HHhhhhHHHHHHHH------
Confidence 79999888877765443332332566642 2 234567899999999888763 56666666666665
Q ss_pred CChHHHHHHHHHHHhcCCcc
Q 012513 441 GSSTKSLAQVAQRWKNPEIE 460 (462)
Q Consensus 441 g~~~~~~~~~~~~l~~~~~~ 460 (462)
++..++...=.|++-..+
T Consensus 568 --aRN~LE~YayslKnqi~d 585 (663)
T KOG0100|consen 568 --ARNELESYAYSLKNQIGD 585 (663)
T ss_pred --hHHHHHHHHHHhhhccCc
Confidence 445566666666655444
No 216
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=48.50 E-value=34 Score=29.96 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=23.0
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
|+|.++. +.|++- -.|.++...| ||+||-++-.
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~R-GHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKR-GHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhC-CCeeEEEEeC
Confidence 4566653 455554 4678888888 9999998843
No 217
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.32 E-value=24 Score=33.11 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=40.8
Q ss_pred chhhhhccccccccccccCchhHHHHHH----hCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHH
Q 012513 335 PQVQVLRHGSTGGFLSHCGWNSILESIV----HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYA 410 (462)
Q Consensus 335 pq~~lL~~~~~~~~I~HGG~~t~~eal~----~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai 410 (462)
++..+...++ ++|+=||=||++.|.. .++|++.+-.. .+|.... ++++++.+.+
T Consensus 35 ~~~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~~------~~~~~~~~~l 92 (272)
T PRK02231 35 SLEEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLTD------IDPKNAYEQL 92 (272)
T ss_pred ChHHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccccc------CCHHHHHHHH
Confidence 3445555677 8999999999998865 36787766532 1333221 6778888888
Q ss_pred HHHhc
Q 012513 411 KGLIQ 415 (462)
Q Consensus 411 ~~vl~ 415 (462)
.+++.
T Consensus 93 ~~~~~ 97 (272)
T PRK02231 93 EACLE 97 (272)
T ss_pred HHHHh
Confidence 88887
No 218
>PRK14099 glycogen synthase; Provisional
Probab=48.24 E-value=22 Score=36.59 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=44.7
Q ss_pred EeccCcch-hhhh-cccccccccc---ccC-chhHHHHHHhCCceeeccccc--chhhhhHHhhc--ccceeEEeeecCC
Q 012513 329 VVPSWSPQ-VQVL-RHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYS--EQKMNAVLLTD--DLKVSFRVKVNEN 398 (462)
Q Consensus 329 ~~~~~~pq-~~lL-~~~~~~~~I~---HGG-~~t~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~--~~g~G~~~~~~~~ 398 (462)
+..+|-.. ..++ ..++ +||. +=| ..+.+||+++|+|.|+....+ |--....-..+ +-+.|+.++.
T Consensus 354 ~~~G~~~~l~~~~~a~aD--ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~--- 428 (485)
T PRK14099 354 VVIGYDEALAHLIQAGAD--ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP--- 428 (485)
T ss_pred EEeCCCHHHHHHHHhcCC--EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC---
Confidence 45566332 2223 3466 5553 334 347789999998777765433 21111100000 0146776653
Q ss_pred cccCHHHHHHHHHH---HhcCc
Q 012513 399 GLVGREDIANYAKG---LIQGE 417 (462)
Q Consensus 399 ~~~~~~~l~~ai~~---vl~~~ 417 (462)
-+.++++++|.+ +++|+
T Consensus 429 --~d~~~La~ai~~a~~l~~d~ 448 (485)
T PRK14099 429 --VTADALAAALRKTAALFADP 448 (485)
T ss_pred --CCHHHHHHHHHHHHHHhcCH
Confidence 478899999987 55563
No 219
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=48.00 E-value=40 Score=35.49 Aligned_cols=27 Identities=11% Similarity=0.381 Sum_probs=21.8
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| .+++|.+.++|||++-
T Consensus 78 ~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 110 (570)
T PRK06725 78 VGVVFATSGPGATNLVTGLADAYMDSIPLVVIT 110 (570)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCcCEEEEe
Confidence 44777887755 6789999999999985
No 220
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=47.95 E-value=1.4e+02 Score=27.56 Aligned_cols=36 Identities=22% Similarity=0.124 Sum_probs=30.4
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
+++..-|+.|.-.-...+|..++++ |++|.++....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCC
Confidence 4455568999999999999999887 99999998654
No 221
>PRK05595 replicative DNA helicase; Provisional
Probab=47.87 E-value=67 Score=32.61 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=32.9
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++...|+.|=-.-.+.+|..++.++|+.|.|++.+....
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~ 243 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKE 243 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHH
Confidence 46677789999999999999887544599999999885443
No 222
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.43 E-value=31 Score=32.78 Aligned_cols=58 Identities=9% Similarity=0.154 Sum_probs=40.8
Q ss_pred hhhhccccccccccccCchhHHHHHH----hCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHH
Q 012513 337 VQVLRHGSTGGFLSHCGWNSILESIV----HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKG 412 (462)
Q Consensus 337 ~~lL~~~~~~~~I~HGG~~t~~eal~----~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~ 412 (462)
..+...++ ++|+=||=||++.|.. +++|++.+-.. .+|..- + ++++++.+++++
T Consensus 58 ~~~~~~~d--~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl~---~---~~~~~~~~~l~~ 115 (292)
T PRK03378 58 AEIGQQAD--LAIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFLT---D---LDPDNALQQLSD 115 (292)
T ss_pred hhcCCCCC--EEEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCccc---c---cCHHHHHHHHHH
Confidence 33444566 8999999999999975 36777665532 123221 1 678899999999
Q ss_pred HhcC
Q 012513 413 LIQG 416 (462)
Q Consensus 413 vl~~ 416 (462)
++++
T Consensus 116 i~~g 119 (292)
T PRK03378 116 VLEG 119 (292)
T ss_pred HHcC
Confidence 9886
No 223
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=47.33 E-value=41 Score=34.31 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=43.5
Q ss_pred cccCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHH
Q 012513 350 SHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMR 427 (462)
Q Consensus 350 ~HGG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~ 427 (462)
-|=| -++.||+++|+|+++.=-+ .-+.-|.. .-.|..++..+ -....+++++.+...|+ +++.++.
T Consensus 376 E~FG-iv~IEAMa~glPvvAt~~G----GP~EiV~~-~~tG~l~dp~~---e~~~~~a~~~~kl~~~p---~l~~~~~ 441 (495)
T KOG0853|consen 376 EHFG-IVPIEAMACGLPVVATNNG----GPAEIVVH-GVTGLLIDPGQ---EAVAELADALLKLRRDP---ELWARMG 441 (495)
T ss_pred CCcc-ceeHHHHhcCCCEEEecCC----CceEEEEc-CCcceeeCCch---HHHHHHHHHHHHHhcCH---HHHHHHH
Confidence 3444 3899999999999886433 33334444 45566666432 34457999999999996 5544443
No 224
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=45.10 E-value=67 Score=33.66 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=22.0
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33788888844 7899999999999884
No 225
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=45.03 E-value=57 Score=34.27 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.0
Q ss_pred ccccccCc------hhHHHHHHhCCceeecc
Q 012513 347 GFLSHCGW------NSILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG~------~t~~eal~~GvP~v~~P 371 (462)
++++|.|- +.+.+|.+.++|+|++-
T Consensus 73 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 73 VCVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred EEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 77788774 47899999999999985
No 226
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.02 E-value=2.9e+02 Score=26.52 Aligned_cols=97 Identities=11% Similarity=-0.006 Sum_probs=58.8
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCchHH-HHHHH
Q 012513 20 PGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVPIET-RIILT 98 (462)
Q Consensus 20 p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~l~~~ 98 (462)
.-.-|+.-+..|-++|..+ ||+|.+.+=. +. ...+.+..+ |+.+..+.... ...+. .+...
T Consensus 8 ~n~~hvhfFk~lI~elekk-G~ev~iT~rd-~~-------~v~~LLd~y--gf~~~~Igk~g-------~~tl~~Kl~~~ 69 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKK-GHEVLITCRD-FG-------VVTELLDLY--GFPYKSIGKHG-------GVTLKEKLLES 69 (346)
T ss_pred CCcchhhHHHHHHHHHHhC-CeEEEEEEee-cC-------cHHHHHHHh--CCCeEeecccC-------CccHHHHHHHH
Confidence 3346899999999999988 9999865533 22 223333433 45555443211 11122 23333
Q ss_pred HHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCC
Q 012513 99 LVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDV 140 (462)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI 140 (462)
..+.. .|.++..+.+||+.+. -..+....+|..+|+
T Consensus 70 ~eR~~-----~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~ 105 (346)
T COG1817 70 AERVY-----KLSKIIAEFKPDVAIG-KHSPELPRVAFGLGI 105 (346)
T ss_pred HHHHH-----HHHHHHhhcCCceEee-cCCcchhhHHhhcCC
Confidence 33321 2344455669999998 667778889999998
No 227
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=44.98 E-value=84 Score=34.25 Aligned_cols=112 Identities=16% Similarity=0.059 Sum_probs=62.4
Q ss_pred EeccCcchhh---hhccccccccccc---cCc-hhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCccc
Q 012513 329 VVPSWSPQVQ---VLRHGSTGGFLSH---CGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 401 (462)
Q Consensus 329 ~~~~~~pq~~---lL~~~~~~~~I~H---GG~-~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~ 401 (462)
+..+++++.+ ++..++ +|+.- -|+ .++.||+++|+|-..+|+..+-- .-..+ +.-|+.++. .
T Consensus 345 ~~~~~~~~~~l~~ly~~aD--v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~---G~~~~-l~~~llv~P-----~ 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAAD--VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMA---GAAAE-LAEALLVNP-----N 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhcc--EEEecccccccCcccceEEEEcCCCCceEEEeccc---chhHH-hCcCeEECC-----C
Confidence 3456778764 556677 44432 354 47899999977522222211110 00111 223565543 5
Q ss_pred CHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcC
Q 012513 402 GREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKNP 457 (462)
Q Consensus 402 ~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 457 (462)
+.++++++|.+++..+. ++.+++.+++.+.++ .-+...-.+++++.+.+.
T Consensus 414 d~~~la~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 DIEGIAAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 78999999999998542 234444454444443 345666666666666554
No 228
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=44.93 E-value=1.2e+02 Score=28.64 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=68.4
Q ss_pred HHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccC
Q 012513 274 ELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCG 353 (462)
Q Consensus 274 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG 353 (462)
++++.++..+..+++..+...- +|+.+.+..+.+-+= =||+ +.=...|
T Consensus 151 ~~~~~l~~~~~Dlivlagym~i-------------------l~~~~l~~~~~~iIN-----------iHpS--LLP~f~G 198 (280)
T TIGR00655 151 RQLELLKQYQVDLVVLAKYMQI-------------------LSPDFVKRYPNKIIN-----------IHHS--FLPAFIG 198 (280)
T ss_pred HHHHHHHHhCCCEEEEeCchhh-------------------CCHHHHhhccCCEEE-----------ecCC--cCCCCCC
Confidence 4666677777777777765432 667666555432221 2555 4445679
Q ss_pred chhHHHHHHhCCceeeccccc--chhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012513 354 WNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 430 (462)
Q Consensus 354 ~~t~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~ 430 (462)
.+....|+..|+...++-++. +..+.+.-+.+ .- +.+... -|.++|.+.+.++-. .-|-+..+.+.
T Consensus 199 ~~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q-~~--v~I~~~----dt~~~L~~ri~~~E~----~~~~~ai~~~~ 266 (280)
T TIGR00655 199 ANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQ-DV--VRVDHT----DNVEDLIRAGRDIEK----VVLARAVKLHL 266 (280)
T ss_pred cCHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEEE-EE--EEcCCC----CCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 999999999999998887543 33343443333 11 222222 588888888877643 25555555444
No 229
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.92 E-value=28 Score=32.76 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=38.0
Q ss_pred cccccccccccCchhHHHHHH---hCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcC
Q 012513 342 HGSTGGFLSHCGWNSILESIV---HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 342 ~~~~~~~I~HGG~~t~~eal~---~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~ 416 (462)
.++ ++|.-||-||+++++. .++|+++++... + |..- + +.++++.+++.+++++
T Consensus 57 ~~d--~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GFl~---~---~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVD--FIIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GFLT---E---VEPEETFFALSRLLEG 112 (277)
T ss_pred CCC--EEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Cccc---c---CCHHHHHHHHHHHHcC
Confidence 456 8999999999999984 456888887532 1 2211 1 5678888888888876
No 230
>PRK07524 hypothetical protein; Provisional
Probab=44.75 E-value=65 Score=33.55 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=20.6
Q ss_pred ccccccCch------hHHHHHHhCCceeecc
Q 012513 347 GFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
+++.|.|-| ++.+|...++|+|++-
T Consensus 67 v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~ 97 (535)
T PRK07524 67 VCFIITGPGMTNIATAMGQAYADSIPMLVIS 97 (535)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 677777744 8899999999999884
No 231
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=44.67 E-value=2.2e+02 Score=25.10 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=57.7
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC-CCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCc
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI-DDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVP 90 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 90 (462)
--|.+++..+-|-....+.+|-+-.-+ |.+|-++-.-- -.. ......+..++..+.|+.++....++......
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~Gh-G~rv~vvQFiKg~~~-----~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~ 102 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGH-GLRVGVVQFIKGGWK-----YGEEAALEKFGLGVEFHGMGEGFTWETQDREA 102 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcC-CCEEEEEEEeecCcc-----hhHHHHHHhhccceeEEecCCceeCCCcCcHH
Confidence 347788888888887776666665544 77776665310 011 12233444445578888887554433221111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcc
Q 012513 91 IETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGS 129 (462)
Q Consensus 91 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~ 129 (462)
....+....+... +.+++..+|+||.|-+++
T Consensus 103 -------d~~aa~~~w~~a~-~~l~~~~ydlviLDEl~~ 133 (198)
T COG2109 103 -------DIAAAKAGWEHAK-EALADGKYDLVILDELNY 133 (198)
T ss_pred -------HHHHHHHHHHHHH-HHHhCCCCCEEEEehhhH
Confidence 1122233333333 333556899999998764
No 232
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=44.61 E-value=90 Score=25.12 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCCEEEEEeCC
Q 012513 28 LAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 28 ~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
+-.+...+.++ |++|++++..
T Consensus 14 ~gg~i~~~~~~-g~~v~vv~~t 34 (128)
T PF02585_consen 14 CGGTIAKLAEA-GHRVVVVTLT 34 (128)
T ss_dssp HHHHHHHHHHT-T-EEEEEECE
T ss_pred hHHHHHHHHhc-CCeEEEEEec
Confidence 44455677787 9999988854
No 233
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=44.58 E-value=19 Score=31.56 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCC
Q 012513 28 LAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 28 ~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
-..||+++..+ ||+|++++.+.
T Consensus 32 G~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHT-T-EEEEEE-TT
T ss_pred HHHHHHHHHHC-CCEEEEEecCc
Confidence 46899999888 99999999873
No 234
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=44.49 E-value=56 Score=34.27 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=21.6
Q ss_pred cccccccCc------hhHHHHHHhCCceeecc
Q 012513 346 GGFLSHCGW------NSILESIVHGVPIIAWP 371 (462)
Q Consensus 346 ~~~I~HGG~------~t~~eal~~GvP~v~~P 371 (462)
+++++|.|- +.+++|...++|+|++-
T Consensus 66 gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 66 GVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 377888774 48899999999999995
No 235
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=44.10 E-value=1.2e+02 Score=26.96 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCc
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVP 90 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 90 (462)
||||+++..+.-+-+.+++..-..= .. +++|.++.+..... ......... ++.+..++.....
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~-~~-~~~I~~vvs~~~~~------~~~~~a~~~--gIp~~~~~~~~~~------- 63 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAG-QL-PAEIVAVISDRPDA------YGLERAEAA--GIPTFVLDHKDFP------- 63 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcC-CC-CcEEEEEEecCccc------hHHHHHHHc--CCCEEEECccccC-------
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEe
Q 012513 91 IETRIILTLVRSLSSLRDALKVLTESTRLVALVV 124 (462)
Q Consensus 91 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~ 124 (462)
......+.+.+++++.++|++|+
T Consensus 64 -----------~~~~~~~~~~~~l~~~~~D~iv~ 86 (200)
T PRK05647 64 -----------SREAFDAALVEALDAYQPDLVVL 86 (200)
T ss_pred -----------chhHhHHHHHHHHHHhCcCEEEh
No 236
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=44.08 E-value=50 Score=34.52 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=21.4
Q ss_pred ccccccCch------hHHHHHHhCCceeecc
Q 012513 347 GFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
++++|.|-| .+.+|...++|+|++-
T Consensus 66 v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 66 VCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred EEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 778887744 7899999999999995
No 237
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=44.00 E-value=37 Score=27.35 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=32.7
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
||++.+.++-.|-.-..-++..|..+ |++|.+..+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~-G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDA-GFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHC-CCEEEECCCC
Confidence 58999999999999999999999877 9999998875
No 238
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=43.78 E-value=42 Score=35.30 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.0
Q ss_pred ccccccCc------hhHHHHHHhCCceeecc
Q 012513 347 GFLSHCGW------NSILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG~------~t~~eal~~GvP~v~~P 371 (462)
++++|.|- +.+.+|.+.++|||++.
T Consensus 71 v~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 71 VCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 67778774 47799999999999995
No 239
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=43.77 E-value=31 Score=30.83 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=30.6
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
+-|++.-+|+.|-..-...||++|.++ +|+|...+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE-IWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh-hhhccccch
Confidence 446677789999999999999999988 999886653
No 240
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=43.69 E-value=43 Score=29.76 Aligned_cols=38 Identities=21% Similarity=0.085 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
+.+|++.+.++-.|-....-++..|.++ |++|+++...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~-G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEAN-GFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHC-CCEEEECCCC
Confidence 5689999999999999999999999776 9999887743
No 241
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.43 E-value=84 Score=30.29 Aligned_cols=42 Identities=24% Similarity=0.187 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
+--|+|+-.-+.|-....-.||..|.++ |+.|.++....|+.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~DTFRA 180 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGDTFRA 180 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecchHHH
Confidence 4567777778999999999999999987 99999999887775
No 242
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=43.23 E-value=1.3e+02 Score=28.48 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=68.1
Q ss_pred HHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccC
Q 012513 274 ELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCG 353 (462)
Q Consensus 274 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG 353 (462)
++++.++..+..+++..+...- +|+.+.+..+.+ -+==||+ +.=...|
T Consensus 156 ~~~~~l~~~~~Dlivlagy~~i-------------------l~~~~l~~~~~~-----------iiNiHpS--LLP~yrG 203 (286)
T PRK06027 156 RLLELIDEYQPDLVVLARYMQI-------------------LSPDFVARFPGR-----------IINIHHS--FLPAFKG 203 (286)
T ss_pred HHHHHHHHhCCCEEEEecchhh-------------------cCHHHHhhccCC-----------ceecCcc--cCCCCCC
Confidence 3566666667777777665432 666665444322 1222555 4445579
Q ss_pred chhHHHHHHhCCceeeccccc--chhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012513 354 WNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 430 (462)
Q Consensus 354 ~~t~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~ 430 (462)
.+....|+.+|+...++-++. +..+.+.-+.+ . .+.+... -|.++|.+.+.++-.. -|-+..+.+.
T Consensus 204 ~~~~~~ai~~G~~~tG~TiH~v~~~~D~G~Ii~Q-~--~v~i~~~----dt~~~L~~ri~~~E~~----~~~~ai~~~~ 271 (286)
T PRK06027 204 AKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQ-D--VIRVDHR----DTAEDLVRAGRDVEKQ----VLARAVRWHL 271 (286)
T ss_pred CCHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEE-E--EEEcCCC----CCHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 999999999999998887543 33444444433 1 2222223 4788888888776432 5666555554
No 243
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.99 E-value=61 Score=34.06 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=22.2
Q ss_pred ccccccccCc------hhHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGW------NSILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~------~t~~eal~~GvP~v~~P 371 (462)
.+++++|.|- +++++|...++|+|++.
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3478888774 48899999999999985
No 244
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.93 E-value=63 Score=34.02 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=22.1
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| ++.+|.+.++|||++.
T Consensus 68 ~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 68 VGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 44788887744 7889999999999985
No 245
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=42.70 E-value=1.1e+02 Score=26.12 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=28.0
Q ss_pred cchhhhhccccccccccccCchhHHH---HHHhCCceeeccc
Q 012513 334 SPQVQVLRHGSTGGFLSHCGWNSILE---SIVHGVPIIAWPL 372 (462)
Q Consensus 334 ~pq~~lL~~~~~~~~I~HGG~~t~~e---al~~GvP~v~~P~ 372 (462)
.+...++-..+-.+++-=||.||+.| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 44666665544446677788988655 5889999999984
No 246
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.65 E-value=62 Score=34.07 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.2
Q ss_pred ccccccccCc------hhHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGW------NSILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~------~t~~eal~~GvP~v~~P 371 (462)
.+++++|.|- +++.+|...++|+|++-
T Consensus 68 ~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 68 TGVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3478888774 48899999999999995
No 247
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=42.63 E-value=32 Score=30.10 Aligned_cols=38 Identities=11% Similarity=0.332 Sum_probs=30.1
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTID 51 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~ 51 (462)
+||++.-.++.|=+ -...+.+.|.++ |++|.++.++..
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~-g~~V~vv~T~~A 39 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKR-GYQVTVLMTKAA 39 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHC-CCEEEEEEChhH
Confidence 57888877775555 489999999887 999999888743
No 248
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=42.57 E-value=36 Score=32.66 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=26.8
Q ss_pred EcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 17 VPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 17 ~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
++.++.|-.--.+.|++.|.++ |++|.+++-
T Consensus 36 itvGGTGKTP~v~~La~~l~~~-G~~~~IlSR 66 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDR-GLRVGVLSR 66 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHC-CCEEEEECC
Confidence 4568888888899999999988 999998884
No 249
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=42.19 E-value=32 Score=29.89 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=27.5
Q ss_pred EEEEcCCCcCCHHH-HHHHHHHHHhcCCCEEEEEeCCCC
Q 012513 14 VAMVPTPGMGHLIP-LAQLAKRLVRQHNFLVSIFIPTID 51 (462)
Q Consensus 14 ill~~~p~~GHv~P-~l~La~~L~~r~GH~Vt~~~~~~~ 51 (462)
|++.-.++ ||... ...+.++|.+++||+|.++.++.-
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A 39 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAG 39 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhH
Confidence 34444444 88866 889999998666999999998743
No 250
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=42.12 E-value=34 Score=31.18 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCCEEEEEeC
Q 012513 29 AQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 29 l~La~~L~~r~GH~Vt~~~~ 48 (462)
.+||++|.++ ||+|+++..
T Consensus 30 ~aLA~~L~~~-G~~V~li~r 48 (229)
T PRK06732 30 KIIAETFLAA-GHEVTLVTT 48 (229)
T ss_pred HHHHHHHHhC-CCEEEEEEC
Confidence 5788999888 999999874
No 251
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=41.96 E-value=1.1e+02 Score=29.91 Aligned_cols=98 Identities=7% Similarity=0.096 Sum_probs=59.7
Q ss_pred CeEEEEEeCCC---CCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCC-CceE
Q 012513 254 ESVLFVCFGSG---GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKG-VGLV 329 (462)
Q Consensus 254 ~~~v~vs~Gs~---~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~ 329 (462)
++.|.+.-|+. ...+.+.+.++++.|...+.++++.-+....+ . ..-+...+.... +.+.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e--------------~--~~~~~i~~~~~~~~~~~ 246 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDD--------------L--ACVNEIAQGCQTPPVTA 246 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHH--------------H--HHHHHHHHhcCCCcccc
Confidence 34777777774 45778889999999987777766543322110 0 000111111111 1222
Q ss_pred eccCc--c-hhhhhccccccccccccCchhHHHHHHhCCceeec
Q 012513 330 VPSWS--P-QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW 370 (462)
Q Consensus 330 ~~~~~--p-q~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~ 370 (462)
+.+-. . -.+++.+++ +||++ -.|-++=|.+.|+|+|++
T Consensus 247 l~g~~sL~el~ali~~a~--l~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 247 LAGKTTFPELGALIDHAQ--LFIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred ccCCCCHHHHHHHHHhCC--EEEec-CCHHHHHHHHcCCCEEEE
Confidence 23332 2 377888899 89987 568899999999999876
No 252
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=41.83 E-value=2.5e+02 Score=24.96 Aligned_cols=110 Identities=11% Similarity=0.069 Sum_probs=56.8
Q ss_pred hhhhccccccccccccCchhHHH-----HHHhCCceeec--ccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHH
Q 012513 337 VQVLRHGSTGGFLSHCGWNSILE-----SIVHGVPIIAW--PLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANY 409 (462)
Q Consensus 337 ~~lL~~~~~~~~I~HGG~~t~~e-----al~~GvP~v~~--P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~a 409 (462)
...|..+. ++|..-|...+.+ |-..|+|+-++ |-..| +..-..+.+ =++-+.+.+......-...|++.
T Consensus 64 ~~dl~~~~--lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~-g~l~iaisT~G~sP~la~~lr~~ 139 (205)
T TIGR01470 64 ADILEGAF--LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDR-SPVVVAISSGGAAPVLARLLRER 139 (205)
T ss_pred HHHhCCcE--EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEc-CCEEEEEECCCCCcHHHHHHHHH
Confidence 44566666 6777777664444 34568888443 22222 222223333 23333443332112335678888
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 012513 410 AKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVA 451 (462)
Q Consensus 410 i~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 451 (462)
|++.+.. +...+-+.+.++++.+++........+..+++++
T Consensus 140 ie~~l~~-~~~~~~~~~~~~R~~~k~~~~~~~~r~~~~~~~~ 180 (205)
T TIGR01470 140 IETLLPP-SLGDLATLAATWRDAVKKRLPNGAARRRFWEKFF 180 (205)
T ss_pred HHHhcch-hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 8888853 2245667777777777765333222223445444
No 253
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=41.80 E-value=48 Score=29.39 Aligned_cols=39 Identities=18% Similarity=0.004 Sum_probs=35.1
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
+.+|++.+.++-.|-....-++..|.++ |++|+++.+..
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~-G~~vi~LG~~v 122 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRAN-GFDVIDLGRDV 122 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC-CcEEEECCCCC
Confidence 4689999999999999999999999887 99999998653
No 254
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=41.77 E-value=32 Score=29.85 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=22.7
Q ss_pred ccccccccccccCchhHHHHHHhCCceeeccccc
Q 012513 341 RHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS 374 (462)
Q Consensus 341 ~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~ 374 (462)
-+..+.++|+.||...+..... ++|+|-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 3444559999999999999888 99999999865
No 255
>PRK11269 glyoxylate carboligase; Provisional
Probab=41.72 E-value=58 Score=34.43 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=21.5
Q ss_pred ccccccccC------chhHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCG------WNSILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG------~~t~~eal~~GvP~v~~P 371 (462)
++++++|.| .+.+++|.+.++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 345666656 678999999999999985
No 256
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=41.65 E-value=1.1e+02 Score=32.26 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=22.3
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34788888744 7889999999999996
No 257
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=41.44 E-value=55 Score=34.40 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=22.2
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| ++.+|.+.++|||++.
T Consensus 74 ~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 74 LGVAVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34788888854 6889999999999996
No 258
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=41.28 E-value=70 Score=32.29 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=33.7
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++...|+.|=-.-.+.+|..++.++|+.|.|++.+....
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~ 237 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAE 237 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHH
Confidence 46777788999999999999998754599999999885544
No 259
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=40.99 E-value=66 Score=33.88 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=21.9
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| ++++|.+.++|+|++-
T Consensus 68 ~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 68 VGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 44778887755 6789999999999995
No 260
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.50 E-value=41 Score=31.53 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=38.0
Q ss_pred cccccccccccCchhHHHHHHh-CCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcC
Q 012513 342 HGSTGGFLSHCGWNSILESIVH-GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 342 ~~~~~~~I~HGG~~t~~eal~~-GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~ 416 (462)
.++ ++|+=||-||++.|... ..|++.+-.. .+|..- + ++.+++.+++++++++
T Consensus 52 ~~D--~vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGFL~---~---~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NAD--VIITIGGDGTILRTLQRAKGPILGINMG--------------GLGFLT---E---IEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCC--EEEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCccCc---c---cCHHHHHHHHHHHHcC
Confidence 466 89999999999999884 4566544321 123221 2 6789999999999987
No 261
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=40.19 E-value=35 Score=22.12 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012513 402 GREDIANYAKGLIQGEEGKLLRKKMRALK 430 (462)
Q Consensus 402 ~~~~l~~ai~~vl~~~~~~~~r~~a~~l~ 430 (462)
++++|.+||..+.++. -++++.|+.+.
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHHC
Confidence 4789999999998763 57888887764
No 262
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=40.19 E-value=2.4e+02 Score=28.46 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
+..|+|+-.++.|-..-...||..|..+ |+.|.+++...+++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADTFRA 141 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcccch
Confidence 3467788888999999999999999877 99999999876665
No 263
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=40.08 E-value=65 Score=33.93 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=21.9
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| ++.+|...++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34778887754 6889999999999985
No 264
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=39.65 E-value=66 Score=27.63 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=20.6
Q ss_pred ccccccCc------hhHHHHHHhCCceeecccc
Q 012513 347 GFLSHCGW------NSILESIVHGVPIIAWPLY 373 (462)
Q Consensus 347 ~~I~HGG~------~t~~eal~~GvP~v~~P~~ 373 (462)
++++|.|- +++.+|...++|+|++.-.
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 67777764 4788899999999998743
No 265
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=39.59 E-value=49 Score=27.58 Aligned_cols=38 Identities=21% Similarity=0.089 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
++.||++.+.+.-||=.-..-+++.|+.. |.+|.....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~-GfeVi~~g~ 48 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADA-GFEVINLGL 48 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhC-CceEEecCC
Confidence 57899999999999999999999999887 999987554
No 266
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.11 E-value=50 Score=30.69 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=37.7
Q ss_pred cccccccccccCchhHHHHHH-hCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcC
Q 012513 342 HGSTGGFLSHCGWNSILESIV-HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 342 ~~~~~~~I~HGG~~t~~eal~-~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~ 416 (462)
.++ ++|+=||-||++.|+. .++|++.+-.. .+|... + ++.+++.+++++++++
T Consensus 41 ~~d--~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~---~---~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TAD--LIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS---S---YTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCC--EEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc---c---cCHHHHHHHHHHHHcC
Confidence 445 8999999999999987 46776655422 123222 1 6778899999998876
No 267
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=38.94 E-value=73 Score=33.69 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=19.7
Q ss_pred ccccccC------chhHHHHHHhCCceeecc
Q 012513 347 GFLSHCG------WNSILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG------~~t~~eal~~GvP~v~~P 371 (462)
+++.|.| .+.+.+|...++|||++-
T Consensus 70 v~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 100 (588)
T TIGR01504 70 VCIGTSGPAGTDMITGLYSASADSIPILCIT 100 (588)
T ss_pred EEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 5555544 568899999999999995
No 268
>PRK05920 aromatic acid decarboxylase; Validated
Probab=38.94 E-value=49 Score=29.58 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
++||++.-.++ ....=...+.++|.+. ||+|.++.++.
T Consensus 3 ~krIllgITGs-iaa~ka~~lvr~L~~~-g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAITGA-SGAIYGVRLLECLLAA-DYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHHC-CCEEEEEEChh
Confidence 46777776666 4456889999999887 99999999874
No 269
>PRK07586 hypothetical protein; Validated
Probab=38.68 E-value=67 Score=33.28 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=19.5
Q ss_pred ccccccCch------hHHHHHHhCCceeecc
Q 012513 347 GFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
+++.|.|-| .+.+|.+.++|+|++.
T Consensus 67 v~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 67 ATLLHLGPGLANGLANLHNARRARTPIVNIV 97 (514)
T ss_pred EEEecccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 667777655 4558999999999986
No 270
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.31 E-value=56 Score=30.52 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=38.1
Q ss_pred cccccccccccCchhHHHHHHh-----CCceeeccc-ccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhc
Q 012513 342 HGSTGGFLSHCGWNSILESIVH-----GVPIIAWPL-YSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQ 415 (462)
Q Consensus 342 ~~~~~~~I~HGG~~t~~eal~~-----GvP~v~~P~-~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~ 415 (462)
.++ ++|+=||=||++.|+.. .+|++.+-. . .+|.. .+ ++.+++.++++++++
T Consensus 39 ~~D--~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G--------------~lGFL---~~---~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 39 NAN--IIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD--------------QLGFY---CD---FHIDDLDKMIQAITK 96 (264)
T ss_pred Ccc--EEEEECCcHHHHHHHHHhcccCCCeEEeEecCC--------------CCeEc---cc---CCHHHHHHHHHHHHc
Confidence 356 89999999999999874 556655543 1 22322 22 678899999999987
Q ss_pred C
Q 012513 416 G 416 (462)
Q Consensus 416 ~ 416 (462)
+
T Consensus 97 g 97 (264)
T PRK03501 97 E 97 (264)
T ss_pred C
Confidence 6
No 271
>PRK08617 acetolactate synthase; Reviewed
Probab=38.15 E-value=71 Score=33.42 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=21.4
Q ss_pred cccccccCc------hhHHHHHHhCCceeeccc
Q 012513 346 GGFLSHCGW------NSILESIVHGVPIIAWPL 372 (462)
Q Consensus 346 ~~~I~HGG~------~t~~eal~~GvP~v~~P~ 372 (462)
+++++|.|- +++.+|...++|+|++--
T Consensus 69 gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG 101 (552)
T PRK08617 69 GVVLVTSGPGVSNLATGLVTATAEGDPVVAIGG 101 (552)
T ss_pred EEEEECCCCcHhHhHHHHHHHhhcCCCEEEEec
Confidence 367777664 488999999999999953
No 272
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=38.07 E-value=70 Score=30.41 Aligned_cols=93 Identities=15% Similarity=-0.010 Sum_probs=51.8
Q ss_pred chhhcccCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHH
Q 012513 242 PACLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD 321 (462)
Q Consensus 242 ~~~~~wl~~~~~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~ 321 (462)
.++..+..+..-+++-.-........+.+.+..+.++++.++.++++-++.... ...+...
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~----------------~~~~~~~--- 176 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG----------------GAGLEKG--- 176 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC----------------CcccccC---
Confidence 566666665442223332333334455566889999999999999885543211 0001100
Q ss_pred hhCCCceEeccCcchhhhhccccccccccccC--chhHHHH
Q 012513 322 RTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCG--WNSILES 360 (462)
Q Consensus 322 ~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG--~~t~~ea 360 (462)
......=..-+-..|.++.++.|+| ..=..|+
T Consensus 177 -------~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 177 -------HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred -------CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 0001111344456789999999999 5545555
No 273
>PRK08760 replicative DNA helicase; Provisional
Probab=38.02 E-value=1.4e+02 Score=30.65 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=33.6
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++..-|+.|--.-.+.+|...+.++|+.|.|++.+....
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ 271 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSAS 271 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHH
Confidence 47778889999999999999988644599999999875443
No 274
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.02 E-value=1.6e+02 Score=25.13 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=52.8
Q ss_pred hHHHHHHhCCceeecccc--cchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012513 356 SILESIVHGVPIIAWPLY--SEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAA 433 (462)
Q Consensus 356 t~~eal~~GvP~v~~P~~--~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~ 433 (462)
|+.|--.+|.=.+- |.- .=+-.|+...++ .|.=..+..+. .+.++|.++..+-++|.+..+++....++.+..
T Consensus 89 S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~r-FgfPfI~aVkg---~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA 163 (176)
T COG3195 89 STSEQASAGLDRLS-PEEFARFTELNAAYVER-FGFPFIIAVKG---NTKDTILAAFERRLDNDREQEFATALAEIERIA 163 (176)
T ss_pred hHHHHHhcCcccCC-HHHHHHHHHHHHHHHHh-cCCceEEeecC---CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 56666666654421 110 114568889999 99988887776 889999999999999877677777777666554
Q ss_pred H
Q 012513 434 A 434 (462)
Q Consensus 434 ~ 434 (462)
+
T Consensus 164 ~ 164 (176)
T COG3195 164 L 164 (176)
T ss_pred H
Confidence 3
No 275
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=37.62 E-value=75 Score=31.06 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=23.6
Q ss_pred cccccccccccCchh---HHHHHHhCCceeec
Q 012513 342 HGSTGGFLSHCGWNS---ILESIVHGVPIIAW 370 (462)
Q Consensus 342 ~~~~~~~I~HGG~~t---~~eal~~GvP~v~~ 370 (462)
+|+ ++|++||+=| ++.|...|+|+++.
T Consensus 91 kPd--vvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 91 KPD--VIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCC--EEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 377 8999999986 99999999999874
No 276
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=37.30 E-value=1.4e+02 Score=20.56 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 012513 403 REDIANYAKGLIQ-GEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQV 450 (462)
Q Consensus 403 ~~~l~~ai~~vl~-~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 450 (462)
++.|.++++.-++ .|+|..||--..+++--+-+ +|..++.+.++
T Consensus 7 Pe~L~~~m~~fie~hP~WDQ~Rl~~aALa~FL~Q----nG~~~r~~~r~ 51 (57)
T PF10929_consen 7 PEDLHQAMKDFIETHPNWDQYRLFQAALAGFLLQ----NGCQDRAVTRV 51 (57)
T ss_pred cHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCchhHHHHHH
Confidence 6789999999887 57889999999999999885 77777766553
No 277
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=37.25 E-value=43 Score=29.45 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=29.6
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
||++.-.++.|=+.-.+.+.++|.+. |++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~-g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDE-GAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhC-cCEEEEEEchh
Confidence 57777777766666667999999887 99999988763
No 278
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.15 E-value=3.7e+02 Score=26.80 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=33.5
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
..++++-..+.|--.-...||..+..+ |+.|.+++...+..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDtyR~ 247 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFRS 247 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCccCc
Confidence 345666666889999999999999887 99999999876654
No 279
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=37.04 E-value=57 Score=34.16 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=46.9
Q ss_pred chhhhhccccccccccccC-c-hhHHHHHHhCCceeeccccc-chhhhhH--HhhcccceeEEeeecCCcccCHHHHHHH
Q 012513 335 PQVQVLRHGSTGGFLSHCG-W-NSILESIVHGVPIIAWPLYS-EQKMNAV--LLTDDLKVSFRVKVNENGLVGREDIANY 409 (462)
Q Consensus 335 pq~~lL~~~~~~~~I~HGG-~-~t~~eal~~GvP~v~~P~~~-DQ~~~a~--rv~~~~g~G~~~~~~~~~~~~~~~l~~a 409 (462)
|+.+++.-|++++|-+-== | -|-+||.++|||.|.-=+.+ =++.+-. .-.. .|+-+.-+.. -+.++..+.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~-~GV~VvdR~~----~n~~e~v~~ 536 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEE-YGVYVVDRRD----KNYDESVNQ 536 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGG-GTEEEE-SSS----S-HHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcC-CcEEEEeCCC----CCHHHHHHH
Confidence 4666666677666655210 2 38999999999999877644 1121110 1112 3444333333 466665555
Q ss_pred HHHHhc-----Cc-hHHHHHHHHHHHHHH
Q 012513 410 AKGLIQ-----GE-EGKLLRKKMRALKDA 432 (462)
Q Consensus 410 i~~vl~-----~~-~~~~~r~~a~~l~~~ 432 (462)
|.+.|. +. +....|++|++|++.
T Consensus 537 la~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 537 LADFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555543 11 244677777777655
No 280
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=36.92 E-value=80 Score=30.47 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=27.7
Q ss_pred EcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 17 VPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 17 ~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
++.++.|-.--.+.||+.|++| |..|.+++=
T Consensus 55 ltvGGtGKTP~vi~la~~l~~r-G~~~gvvSR 85 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQAR-GVRVGVVSR 85 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhc-CCeeEEEec
Confidence 5668889999999999999998 999999884
No 281
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.70 E-value=78 Score=33.48 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=21.7
Q ss_pred ccccccccCc------hhHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGW------NSILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~------~t~~eal~~GvP~v~~P 371 (462)
.+++++|.|- +++.+|.+.++|+|++.
T Consensus 85 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 117 (587)
T PRK06965 85 VGVALVTSGPGVTNAVTGIATAYMDSIPMVVIS 117 (587)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3377777774 47889999999999996
No 282
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=36.59 E-value=48 Score=29.09 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
++||++.-.++-| ..=...|.++|.+..||+|.++.++.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 3578877777766 66699999999872399999999873
No 283
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=36.55 E-value=29 Score=31.96 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 26 IPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 26 ~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
.-.-.|+++|+++ ||+|++++|..
T Consensus 20 dv~~~L~kaL~~~-G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQ-GHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEEE-T
T ss_pred HHHHHHHHHHHhc-CCeEEEEEccc
Confidence 3467899999887 99999999863
No 284
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=36.26 E-value=1e+02 Score=29.93 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=59.9
Q ss_pred Cce-EeccCcc---hhhhhccccccccccc--cCchhHHHHHHhCCceeecccccchhhhhHHhhcccceeEEeeecCCc
Q 012513 326 VGL-VVPSWSP---QVQVLRHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 399 (462)
Q Consensus 326 ~~~-~~~~~~p---q~~lL~~~~~~~~I~H--GG~~t~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~ 399 (462)
.++ ++.+++| +.++|..|+++.|.|. =|.|++.-.|..|+|+++- .+-+.|-...++ |+-+....++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~~~--~ipVlf~~d~-- 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLKEQ--GIPVLFYGDE-- 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHHhC--CCeEEecccc--
Confidence 354 3467888 4789999998888775 5899999999999999874 344555444444 6666555555
Q ss_pred ccCHHHHHHHHHHHhc
Q 012513 400 LVGREDIANYAKGLIQ 415 (462)
Q Consensus 400 ~~~~~~l~~ai~~vl~ 415 (462)
++...|+++=+++..
T Consensus 318 -L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 -LDEALVREAQRQLAN 332 (360)
T ss_pred -CCHHHHHHHHHHHhh
Confidence 899899888877754
No 285
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=35.92 E-value=68 Score=28.87 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
.+.+|++.+.++-.|-....-++..|..+ |++|+++...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~-G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNN-GYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-CCEEEECCCC
Confidence 35689999999999999999999999876 9999999865
No 286
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=35.50 E-value=1.8e+02 Score=26.33 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=20.8
Q ss_pred ccCCccEEEeCCCcchHH---HHHHHcCC
Q 012513 115 ESTRLVALVVDCFGSAAF---DVANELDV 140 (462)
Q Consensus 115 ~~~~~D~vI~D~~~~~~~---~vA~~lgI 140 (462)
.+++.|+|+.|++.+... .+++..|+
T Consensus 175 ~~~gadlIvLDCmGYt~~~r~~~~~~~g~ 203 (221)
T PF07302_consen 175 AEQGADLIVLDCMGYTQEMRDIVQRALGK 203 (221)
T ss_pred HhcCCCEEEEECCCCCHHHHHHHHHHhCC
Confidence 345999999999988754 47777887
No 287
>PRK08266 hypothetical protein; Provisional
Probab=35.33 E-value=1e+02 Score=32.17 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=21.2
Q ss_pred ccccccCch------hHHHHHHhCCceeecc
Q 012513 347 GFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
++++|.|-| ++.+|...++|+|++-
T Consensus 71 v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 71 VCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred EEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 677787744 8899999999999985
No 288
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=33.97 E-value=57 Score=31.23 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=31.8
Q ss_pred cEEEEEcC-CCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 12 AHVAMVPT-PGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 12 ~~ill~~~-p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
||++|+.. ++.|--.-..++|-.++++ |++|.+++.....
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCCCc
Confidence 46666666 7999999999999999987 9999999876544
No 289
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=33.87 E-value=99 Score=32.38 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=21.6
Q ss_pred ccccccccCc------hhHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGW------NSILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~------~t~~eal~~GvP~v~~P 371 (462)
.+++++|.|- +.+++|...++|||++-
T Consensus 66 ~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~ 98 (554)
T TIGR03254 66 PGVCLTVSAPGFLNGLTALANATTNCFPMIMIS 98 (554)
T ss_pred CEEEEEccCccHHhHHHHHHHHHhcCCCEEEEE
Confidence 3377888664 47899999999999985
No 290
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=33.84 E-value=54 Score=30.42 Aligned_cols=41 Identities=20% Similarity=0.107 Sum_probs=35.5
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
--+++.-.|+.|.-.-.++.+...+++ |..|.+++.+....
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~ 64 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPE 64 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHH
Confidence 357777789999999999999999988 99999999876544
No 291
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=33.66 E-value=46 Score=30.90 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTID 51 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~ 51 (462)
...++|+-.|+.|--.=..+||.+|..+ |+.|+|++.+++
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~el 144 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDL 144 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHHH
Confidence 3468999999999999999999999965 999999997643
No 292
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=33.64 E-value=3.2e+02 Score=23.70 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=30.0
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFI 47 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~ 47 (462)
--|.+++.++.|-..-.+.+|-+.+.+ |++|.++-
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQ 40 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQ 40 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEE
Confidence 358888889999999999999999887 99997664
No 293
>PRK07064 hypothetical protein; Provisional
Probab=33.58 E-value=1e+02 Score=32.12 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=22.2
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| .+.+|.+.++|+|++-
T Consensus 67 ~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 67 LGVALTSTGTGAGNAAGALVEALTAGTPLLHIT 99 (544)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34788888854 7889999999999985
No 294
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=33.50 E-value=3e+02 Score=23.45 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=32.4
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
+++.-.|+.|=-.=.+.++.+.+.+ |..|.+++.+....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~ 40 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPE 40 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHH
Confidence 5677778889999999999998877 99999999875443
No 295
>PRK06321 replicative DNA helicase; Provisional
Probab=33.41 E-value=2e+02 Score=29.52 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=33.2
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
=+++..-|+.|--.-.+.+|...+.++|+.|.|++.+....
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ 268 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVD 268 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 36777789999999999999988644499999999885443
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=33.32 E-value=3e+02 Score=26.09 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
+..|++.-.++.|--.-+..|+..|.++ |+.|.++......
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~-~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRR-GLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 4567777778999999999999999887 9999998865433
No 297
>PRK11914 diacylglycerol kinase; Reviewed
Probab=33.10 E-value=1.1e+02 Score=29.27 Aligned_cols=27 Identities=15% Similarity=0.152 Sum_probs=22.6
Q ss_pred ccccccCchhHHHHH----HhCCceeecccc
Q 012513 347 GFLSHCGWNSILESI----VHGVPIIAWPLY 373 (462)
Q Consensus 347 ~~I~HGG~~t~~eal----~~GvP~v~~P~~ 373 (462)
++|--||=||+.|++ ..++|+-++|..
T Consensus 67 ~vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred EEEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 789999999998887 347999999963
No 298
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=32.79 E-value=2.9e+02 Score=29.15 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=22.1
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 65 ~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 65 MSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 33788887755 6789999999999995
No 299
>PRK10867 signal recognition particle protein; Provisional
Probab=32.58 E-value=2e+02 Score=29.05 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
+..|+++-.++.|-..-...||..|..+.|+.|.+++...+++
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 4567777888999999999999999764499999999887776
No 300
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=32.25 E-value=3.7e+02 Score=25.40 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCCEEEEEeCC
Q 012513 29 AQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 29 l~La~~L~~r~GH~Vt~~~~~ 49 (462)
.+|..+|.+. ||+|++++=.
T Consensus 12 ~~L~~~L~~~-gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKG-GHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhC-CCeEEEEEcC
Confidence 4677888776 9999999944
No 301
>PRK04328 hypothetical protein; Provisional
Probab=31.92 E-value=3.8e+02 Score=24.57 Aligned_cols=40 Identities=15% Similarity=-0.048 Sum_probs=29.1
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++.-.|+.|--.=.++++.+-+++ |+.+.+++.+....
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~ 64 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPV 64 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHH
Confidence 36666677889877667766665477 99999999875443
No 302
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=31.92 E-value=3.7e+02 Score=23.96 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=30.1
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
-+++.-.|+.|=-.-.+.++..-+++ |+.|.+++.+...
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~ 56 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEERE 56 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCH
Confidence 35566667888877778888777677 9999999987543
No 303
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=31.88 E-value=3.2e+02 Score=23.22 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=68.4
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhh
Q 012513 259 VCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQ 338 (462)
Q Consensus 259 vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~ 338 (462)
|=+||- .+.+..+++...|+..+.++-..+.+... .|+.+. .|+-+.
T Consensus 3 IimGS~--SD~~~~~~a~~~L~~~gi~~dv~V~SaHR-------------------tp~~~~-----------~~~~~a- 49 (156)
T TIGR01162 3 IIMGSD--SDLPTMKKAADILEEFGIPYELRVVSAHR-------------------TPELML-----------EYAKEA- 49 (156)
T ss_pred EEECcH--hhHHHHHHHHHHHHHcCCCeEEEEECccc-------------------CHHHHH-----------HHHHHH-
Confidence 335663 35667888888888888887666655433 343322 111110
Q ss_pred hhccccccccccccCchhHHHHHHh---CCceeecccccch-hhhhHHhhc---ccce--eEEeeecCCcccCHHHHHHH
Q 012513 339 VLRHGSTGGFLSHCGWNSILESIVH---GVPIIAWPLYSEQ-KMNAVLLTD---DLKV--SFRVKVNENGLVGREDIANY 409 (462)
Q Consensus 339 lL~~~~~~~~I~HGG~~t~~eal~~---GvP~v~~P~~~DQ-~~~a~rv~~---~~g~--G~~~~~~~~~~~~~~~l~~a 409 (462)
..-.+++||.=.|...-+-++.+ -+|+|.+|....- ......+.- =.|+ +...-.. ..+..-++..
T Consensus 50 --~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~---~~nAa~~Aaq 124 (156)
T TIGR01162 50 --EERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGN---AGNAALLAAQ 124 (156)
T ss_pred --HHCCCeEEEEeCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCC---hhHHHHHHHH
Confidence 00112267776665544444333 4789999874421 111111111 0132 2211111 2455555555
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHhh
Q 012513 410 AKGLIQGEEGKLLRKKMRALKDAAANA 436 (462)
Q Consensus 410 i~~vl~~~~~~~~r~~a~~l~~~~~~~ 436 (462)
|..+ .| +.++++.+.+++.+++.
T Consensus 125 Il~~-~d---~~l~~kl~~~r~~~~~~ 147 (156)
T TIGR01162 125 ILGI-KD---PELAEKLKEYRENQKEE 147 (156)
T ss_pred HHcC-CC---HHHHHHHHHHHHHHHHH
Confidence 5444 34 37888888777777754
No 304
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.61 E-value=65 Score=33.92 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=39.4
Q ss_pred cccccccccccCchhHHHHHHh----CCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcC
Q 012513 342 HGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 342 ~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~ 416 (462)
.++ ++|+-||=||++.|... ++|++.+-.. .+|.. .+ ++.+++.+++.+++++
T Consensus 348 ~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGin~G--------------~lGFL---~~---~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EIS--HIISIGGDGTVLRASKLVNGEEIPIICINMG--------------TVGFL---TE---FSKEEIFKAIDSIISG 404 (569)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------CCCcC---cc---cCHHHHHHHHHHHHcC
Confidence 345 89999999999999774 7788776643 12322 12 6788999999999887
No 305
>PRK09620 hypothetical protein; Provisional
Probab=31.43 E-value=70 Score=29.15 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=25.4
Q ss_pred cEEEEEcCCCcCCHHH------------HHHHHHHHHhcCCCEEEEEeCC
Q 012513 12 AHVAMVPTPGMGHLIP------------LAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P------------~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
++|++...|++=.+.| -..||++|.++ |++|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~-Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK-GAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 4566555554444333 26789999988 9999999754
No 306
>PRK08006 replicative DNA helicase; Provisional
Probab=31.26 E-value=2.5e+02 Score=28.72 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=33.4
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
=+++..-|+.|--.-.+.+|...+.++|+.|.|++.+....
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ 266 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGE 266 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 46777889999999999999988644499999999885443
No 307
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=31.14 E-value=60 Score=31.08 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
+|+|+++-.++.| ..+|..|++. ||+|+++.-.
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~-g~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARA-GFDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHC-CCeEEEEEeC
Confidence 5899999888766 4578889887 9999999864
No 308
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=30.97 E-value=86 Score=29.57 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCceEEEEeCCcc
Q 012513 265 GTLSQEQLNELALGLEMSGQRFLWVAKSPHE 295 (462)
Q Consensus 265 ~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~ 295 (462)
...+.+..+++.+|+.....+.||.+.++..
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g 74 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGYG 74 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcCC
Confidence 3445667888999999999999999887643
No 309
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=30.85 E-value=2.4e+02 Score=28.29 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=33.1
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++...|+.|=-.-.+.+|..++.++|+.|.|++.+....
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~ 236 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAE 236 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHH
Confidence 46777889999999999999888633499999999875443
No 310
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=30.77 E-value=2e+02 Score=29.12 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=35.6
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
+-.++++..++.|-..-...||..|..+.|+.|.++....+++
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 3467777888999999999999999743399999999887766
No 311
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=30.58 E-value=78 Score=29.54 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=23.8
Q ss_pred eEEEEEeCCCCCCCHH-HHHHHHHHHHhC--CCceEEEEeCC
Q 012513 255 SVLFVCFGSGGTLSQE-QLNELALGLEMS--GQRFLWVAKSP 293 (462)
Q Consensus 255 ~~v~vs~Gs~~~~~~~-~~~~i~~al~~~--~~~~i~~~~~~ 293 (462)
.+|.|||||......+ -+..+.+.++.. +..+-|++.+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4899999997554433 677777777653 66888988764
No 312
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.46 E-value=1.2e+02 Score=32.03 Aligned_cols=27 Identities=15% Similarity=0.425 Sum_probs=22.1
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| .+++|...++|||++.
T Consensus 75 ~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~ 107 (595)
T PRK09107 75 PGVVLVTSGPGATNAVTPLQDALMDSIPLVCIT 107 (595)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEE
Confidence 34788887744 8889999999999985
No 313
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=30.09 E-value=5.1e+02 Score=24.93 Aligned_cols=40 Identities=5% Similarity=0.139 Sum_probs=34.2
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcC-CCEEEEEeCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQH-NFLVSIFIPTIDD 52 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~-GH~Vt~~~~~~~~ 52 (462)
||+++-....|++.=...+.+.|+++. +.+|++++.+.+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~ 41 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETI 41 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChH
Confidence 589999999999999999999998864 6899999987433
No 314
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=30.09 E-value=1.2e+02 Score=26.04 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Q 012513 253 SESVLFVCFGSGGTLSQEQLNELALGLEMSGQ 284 (462)
Q Consensus 253 ~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~ 284 (462)
.+..+|+++||......+.++..++.|...+.
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~~ 37 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAAPG 37 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhCCC
Confidence 34489999999765566667777777766433
No 315
>PRK09165 replicative DNA helicase; Provisional
Probab=29.88 E-value=2.5e+02 Score=28.99 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=32.2
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQ--------------HNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r--------------~GH~Vt~~~~~~~~~ 53 (462)
-+++..-|+.|--.-.+.+|...+.+ .|..|.|++.+....
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ 273 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE 273 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence 36777889999999999999888643 278899999885544
No 316
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=29.61 E-value=60 Score=30.69 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=24.8
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
|+|+++-.++.| ..+|..|.+. ||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~-g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQA-GHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhC-CCeEEEEEC
Confidence 578888776665 5688889887 999999985
No 317
>PRK05748 replicative DNA helicase; Provisional
Probab=29.27 E-value=2.7e+02 Score=28.24 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=33.7
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++...|+.|=-.-.+.+|...+.++|+.|.|++.+....
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~ 245 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAE 245 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHH
Confidence 47778889999999999999988644599999999885444
No 318
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=29.10 E-value=82 Score=27.42 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=27.8
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
||++.-.++ +...-...+.++|.++ |++|.++.++.
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~-g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKL-GYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHC-CCEEEEEEChH
Confidence 566666665 4566677999999887 99999998774
No 319
>PRK11519 tyrosine kinase; Provisional
Probab=28.64 E-value=3.6e+02 Score=29.34 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=30.5
Q ss_pred CcEEEEEcC--CCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 11 RAHVAMVPT--PGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 11 ~~~ill~~~--p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
+.++++++. |+-|--.-...||..|++. |++|.++-..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~-g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQT-NKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCC
Confidence 345666655 6888888899999999887 9999998754
No 320
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=28.45 E-value=4.5e+02 Score=23.83 Aligned_cols=40 Identities=15% Similarity=-0.055 Sum_probs=31.0
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++.-.|+.|--.=.++++.+-+++ |..|.|++.+....
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~ 62 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPV 62 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHH
Confidence 46777778999888777777765577 99999999876443
No 321
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=28.42 E-value=1.3e+02 Score=31.73 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.7
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 73 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 105 (569)
T PRK09259 73 PGVCLTVSAPGFLNGLTALANATTNCFPMIMIS 105 (569)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEE
Confidence 33777777644 7899999999999985
No 322
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=27.88 E-value=1.9e+02 Score=32.45 Aligned_cols=106 Identities=9% Similarity=0.002 Sum_probs=60.2
Q ss_pred cCcchh---hhhcccccccccc--ccCchh-HHHHHHhCC---ceeecccccchhhhhHHhhcccc-eeEEeeecCCccc
Q 012513 332 SWSPQV---QVLRHGSTGGFLS--HCGWNS-ILESIVHGV---PIIAWPLYSEQKMNAVLLTDDLK-VSFRVKVNENGLV 401 (462)
Q Consensus 332 ~~~pq~---~lL~~~~~~~~I~--HGG~~t-~~eal~~Gv---P~v~~P~~~DQ~~~a~rv~~~~g-~G~~~~~~~~~~~ 401 (462)
..+|+. +++..++| ++|| .-|+|- ..|+++++. -+++++-+ +..... +| -|+.++. .
T Consensus 446 ~~l~~eeL~AlY~~ADV-~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf------aGaa~~-L~~~AllVNP-----~ 512 (934)
T PLN03064 446 RSLDFHALCALYAVTDV-ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF------AGAAQS-LGAGAILVNP-----W 512 (934)
T ss_pred cCCCHHHHHHHHHhCCE-EEeCccccccCchHHHHHHhhcCCCCCeEEeCC------CchHHH-hCCceEEECC-----C
Confidence 335654 45556774 3333 347774 559999955 23333422 111222 43 3455543 6
Q ss_pred CHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcC
Q 012513 402 GREDIANYAKGLIQ-GEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKNP 457 (462)
Q Consensus 402 ~~~~l~~ai~~vl~-~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 457 (462)
+.++++++|.++|+ ++ ++.+++.+++.+.+. .-+...=.+.|+++|...
T Consensus 513 D~~~vA~AI~~AL~M~~--~Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 513 NITEVAASIAQALNMPE--EEREKRHRHNFMHVT-----THTAQEWAETFVSELNDT 562 (934)
T ss_pred CHHHHHHHHHHHHhCCH--HHHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHHH
Confidence 78999999999987 43 345555555555554 234555566667666654
No 323
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.85 E-value=78 Score=32.34 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCCcCCHHHH------------HHHHHHHHhcCCCEEEEEeCC
Q 012513 10 PRAHVAMVPTPGMGHLIPL------------AQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~------------l~La~~L~~r~GH~Vt~~~~~ 49 (462)
+.+||++...|++=.+.|. ..||+++..+ |++||+++.+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp 305 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGP 305 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 3578999999998888774 6899999988 9999999965
No 324
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=27.46 E-value=3.7e+02 Score=26.82 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=59.0
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCce-Eec
Q 012513 253 SESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGL-VVP 331 (462)
Q Consensus 253 ~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-~~~ 331 (462)
+|+.|-+|+ ......-...+.+.|++.++.++.-+..+.. + .-+++-+.+..+ -|.
T Consensus 184 ~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~G----------G----------~aME~Li~~G~~~~Vl 240 (403)
T PF06792_consen 184 DKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTG----------G----------RAMERLIREGQFDGVL 240 (403)
T ss_pred CCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCc----------h----------HHHHHHHHcCCcEEEE
Confidence 355777764 4456778888999999999987664433211 0 111111111111 123
Q ss_pred cCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccchh
Q 012513 332 SWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQK 377 (462)
Q Consensus 332 ~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~ 377 (462)
+...++..=.... =|..+|-+=.-.|...|+|+|+.|=.-|.-
T Consensus 241 DlTttEl~d~l~G---Gv~sagp~Rl~AA~~~GIP~Vvs~GalDmV 283 (403)
T PF06792_consen 241 DLTTTELADELFG---GVLSAGPDRLEAAARAGIPQVVSPGALDMV 283 (403)
T ss_pred ECcHHHHHHHHhC---CCCCCCchHHHHHHHcCCCEEEecCcccee
Confidence 4445432222222 366678888999999999999999777653
No 325
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=27.44 E-value=4e+02 Score=23.42 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=58.0
Q ss_pred HHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccccC
Q 012513 274 ELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCG 353 (462)
Q Consensus 274 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HGG 353 (462)
++.+.++.....++++++.... +|+.+.+..+.+.+= =|++ +.=-+.|
T Consensus 70 ~~~~~l~~~~~D~iv~~~~~~i-------------------l~~~~l~~~~~~~iN-----------iHps--lLP~yrG 117 (190)
T TIGR00639 70 AIIEELRAHEVDLVVLAGFMRI-------------------LGPTFLSRFAGRILN-----------IHPS--LLPAFPG 117 (190)
T ss_pred HHHHHHHhcCCCEEEEeCcchh-------------------CCHHHHhhccCCEEE-----------EeCC--cccCCCC
Confidence 4677777777787777766433 666655444322111 1344 3334568
Q ss_pred chhHHHHHHhCCceeeccccc--chhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHh
Q 012513 354 WNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLI 414 (462)
Q Consensus 354 ~~t~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl 414 (462)
.+.+..|+..|....++-++. +..+.+.-+.+ .- +.+... -|.+++.+.+..+-
T Consensus 118 ~~p~~~ai~~g~~~tGvTih~v~~~~D~G~Ii~q-~~--~~i~~~----dt~~~L~~k~~~~~ 173 (190)
T TIGR00639 118 LHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQ-AK--VPILPE----DTEETLEQRIHKQE 173 (190)
T ss_pred ccHHHHHHHcCCCeEEEEEEEEcCCCcCCCEEEE-EE--EEcCCC----CCHHHHHHHHHHHH
Confidence 999999999999987777543 22333332222 11 111122 46777777666654
No 326
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=27.25 E-value=67 Score=31.11 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
+|||+++-.+..| ..+|..|+++ ||+|+++..
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~-G~~V~~~~r 33 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAA-GADVTLIGR 33 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhc-CCcEEEEec
Confidence 5789999877766 4678899887 999999875
No 327
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=27.23 E-value=1.5e+02 Score=27.49 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
++||||+.==.+ =|.--+..|+++|.+. | +|+++.|...+.
T Consensus 4 ~~M~ILltNDDG-i~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~S 44 (257)
T PRK13932 4 KKPHILVCNDDG-IEGEGIHVLAASMKKI-G-RVTVVAPAEPHS 44 (257)
T ss_pred CCCEEEEECCCC-CCCHHHHHHHHHHHhC-C-CEEEEcCCCCCC
Confidence 468877543333 3345588999999775 8 799999887665
No 328
>PLN02924 thymidylate kinase
Probab=27.22 E-value=1.4e+02 Score=26.96 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=39.5
Q ss_pred CccccCCCCCCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 1 METQNSKQIPRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 1 m~~~~~~~~~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
|+.+++...+.+-|+|--.++.|--.=.-.|++.|..+ |+.|.+..-
T Consensus 6 ~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~e 52 (220)
T PLN02924 6 METESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRF 52 (220)
T ss_pred cCCCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeC
Confidence 77777777777788888889999999999999999887 999865543
No 329
>PRK13604 luxD acyl transferase; Provisional
Probab=27.04 E-value=1.5e+02 Score=28.37 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFI 47 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~ 47 (462)
+..+++++++..++-.-+..+|+.|.++ |+.|.-+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~-G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSN-GFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHC-CCEEEEec
Confidence 4467788888888877799999999987 99887654
No 330
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=26.86 E-value=2.1e+02 Score=30.51 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=22.0
Q ss_pred ccccccccC------chhHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCG------WNSILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG------~~t~~eal~~GvP~v~~P 371 (462)
++++++|.| .+++++|.+.++|+|++-
T Consensus 86 ~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~ 118 (616)
T PRK07418 86 VGVCFGTSGPGATNLVTGIATAQMDSVPMVVIT 118 (616)
T ss_pred CeEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 447788877 458899999999999984
No 331
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=26.83 E-value=1.4e+02 Score=31.76 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=22.0
Q ss_pred ccccccccCch------hHHHHHHhCCceeecc
Q 012513 345 TGGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 345 ~~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
.+++++|.|-| ++.+|...++|||++-
T Consensus 95 ~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~ 127 (612)
T PRK07789 95 VGVCMATSGPGATNLVTPIADANMDSVPVVAIT 127 (612)
T ss_pred CEEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33778887755 7889999999999996
No 332
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=26.65 E-value=68 Score=27.29 Aligned_cols=31 Identities=16% Similarity=0.442 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEe
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFI 47 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~ 47 (462)
||+|.|+-.+..| ..+|+.|.++ ||+|+++-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~-g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKA-GYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHT-TTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhc-CCeEEeec
Confidence 5788888887766 4789999887 99999876
No 333
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.41 E-value=4e+02 Score=24.98 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=33.9
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
-+++++-.++.|--.-+..|+..+..+ |+.|.+++...+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~-~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 578888888999999999999999877 9999999876443
No 334
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=26.21 E-value=49 Score=28.00 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=22.3
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
|.++-.+..| .++|..|..+ ||+|++.+..
T Consensus 2 I~ViGaG~~G-----~AlA~~la~~-g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWG-----TALAALLADN-GHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHH-----HHHHHHHHHC-TEEEEEETSC
T ss_pred EEEECcCHHH-----HHHHHHHHHc-CCEEEEEecc
Confidence 4444444444 4799999887 9999999976
No 335
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.20 E-value=86 Score=30.21 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
+|+|.++-.+..| ..+|..|+++ ||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~-G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASK-GVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHC-CCeEEEEeCC
Confidence 5799999877766 4688999887 9999998763
No 336
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=25.84 E-value=2e+02 Score=27.01 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=19.8
Q ss_pred ccccccCchhHHHHHHh-----CCcee-ecccc
Q 012513 347 GFLSHCGWNSILESIVH-----GVPII-AWPLY 373 (462)
Q Consensus 347 ~~I~HGG~~t~~eal~~-----GvP~v-~~P~~ 373 (462)
++|.-||=||+.|++.. ..|.+ ++|..
T Consensus 60 ~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 60 TVIAGGGDGTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred EEEEECCCChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 89999999999996543 34444 58963
No 337
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=25.82 E-value=1.8e+02 Score=26.37 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=32.7
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTID 51 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~ 51 (462)
.--+++.-.|+.|--.-..+++.+.+.+ |..|.|++.+..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~ 64 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENT 64 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCC
Confidence 3456777788999999999998887677 999999998743
No 338
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=25.81 E-value=67 Score=25.72 Aligned_cols=28 Identities=7% Similarity=0.282 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 25 LIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 25 v~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
+.|++.+.-.+.-+ ||.+|++.|..+..
T Consensus 9 Vk~L~eIll~Filr-GHKT~vyLP~yY~~ 36 (122)
T PF14626_consen 9 VKALVEILLHFILR-GHKTVVYLPKYYKN 36 (122)
T ss_pred HHHHHHHHHHHHhc-cCeeEEEChHHHhc
Confidence 57888888888888 99999999986654
No 339
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=25.74 E-value=1.1e+02 Score=27.42 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
||+++++-. |++- ..||+.|... ||+|++.+...
T Consensus 1 m~~~~i~Gt---GniG--~alA~~~a~a-g~eV~igs~r~ 34 (211)
T COG2085 1 MMIIAIIGT---GNIG--SALALRLAKA-GHEVIIGSSRG 34 (211)
T ss_pred CcEEEEecc---ChHH--HHHHHHHHhC-CCeEEEecCCC
Confidence 355655544 4443 5788999887 99999987653
No 340
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=25.73 E-value=12 Score=20.57 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=13.4
Q ss_pred CchhHHHHHHhCCceee
Q 012513 353 GWNSILESIVHGVPIIA 369 (462)
Q Consensus 353 G~~t~~eal~~GvP~v~ 369 (462)
|.|+++-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888899999988765
No 341
>PRK13054 lipid kinase; Reviewed
Probab=25.59 E-value=2.2e+02 Score=26.93 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=0.0
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcc
Q 012513 256 VLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSP 335 (462)
Q Consensus 256 ~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~p 335 (462)
.++++ ........+.++++.|+..+..+.+....... -..-+=
T Consensus 7 ~~i~N---~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~----------------------------------~a~~~a 49 (300)
T PRK13054 7 LLILN---GKSAGNEELREAVGLLREEGHTLHVRVTWEKG----------------------------------DAARYV 49 (300)
T ss_pred EEEEC---CCccchHHHHHHHHHHHHcCCEEEEEEecCCC----------------------------------cHHHHH
Q ss_pred hhhhhccccccccccccCchhHHHHHHh--------CCceeeccccc
Q 012513 336 QVQVLRHGSTGGFLSHCGWNSILESIVH--------GVPIIAWPLYS 374 (462)
Q Consensus 336 q~~lL~~~~~~~~I~HGG~~t~~eal~~--------GvP~v~~P~~~ 374 (462)
++.+....+ ++|..||=||+.|++-. .+|+-++|...
T Consensus 50 ~~~~~~~~d--~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~GT 94 (300)
T PRK13054 50 EEALALGVA--TVIAGGGDGTINEVATALAQLEGDARPALGILPLGT 94 (300)
T ss_pred HHHHHcCCC--EEEEECCccHHHHHHHHHHhhccCCCCcEEEEeCCc
No 342
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=25.50 E-value=5.5e+02 Score=23.82 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=27.5
Q ss_pred cchhhhhHHhhcccceeEEeeecCCcc-cCHHHHHHHHH
Q 012513 374 SEQKMNAVLLTDDLKVSFRVKVNENGL-VGREDIANYAK 411 (462)
Q Consensus 374 ~DQ~~~a~rv~~~~g~G~~~~~~~~~~-~~~~~l~~ai~ 411 (462)
+.+..|.+.+++ +++...+.++..+. -+.+.+..|.+
T Consensus 183 fs~~~n~all~q-~~id~vItK~SG~~Gg~~~Ki~aA~e 220 (257)
T COG2099 183 FSEEDNKALLEQ-YRIDVVVTKNSGGAGGTYEKIEAARE 220 (257)
T ss_pred cChHHHHHHHHH-hCCCEEEEccCCcccCcHHHHHHHHH
Confidence 567889999999 99999998765433 56666666543
No 343
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=25.49 E-value=51 Score=26.25 Aligned_cols=52 Identities=6% Similarity=-0.013 Sum_probs=37.9
Q ss_pred HHhCCceeecccccchhhhhHHhhcccceeEEeee-----------cCCcccCHHHHHHHHHHHh
Q 012513 361 IVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKV-----------NENGLVGREDIANYAKGLI 414 (462)
Q Consensus 361 l~~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~-----------~~~~~~~~~~l~~ai~~vl 414 (462)
++|+-++-..|-.+|.-.|+-|+.+ |.-..++. ......+.|+++.+|+-+.
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaq--G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M~ 122 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQ--GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFMA 122 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHh--chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 5778889999999999999999999 54333321 1112357889999987664
No 344
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=25.47 E-value=1.1e+02 Score=29.36 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEEEeCCcc
Q 012513 266 TLSQEQLNELALGLEMSGQRFLWVAKSPHE 295 (462)
Q Consensus 266 ~~~~~~~~~i~~al~~~~~~~i~~~~~~~~ 295 (462)
..+.+..+.+.+|+.....+.||.+.++..
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 78 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGDD 78 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcccC
Confidence 345667888999999888899999887643
No 345
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=25.47 E-value=1.8e+02 Score=25.17 Aligned_cols=70 Identities=23% Similarity=0.115 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEeccCcchhhhhccccccccccc
Q 012513 272 LNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSH 351 (462)
Q Consensus 272 ~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~H 351 (462)
-.++.+.++..+..+++..+.... +|+.+.+..+.+.+-+ |..+||.=
T Consensus 68 ~~~~~~~l~~~~~Dl~v~~~~~~i-------------------l~~~~l~~~~~~~iNi-----HpslLP~y-------- 115 (181)
T PF00551_consen 68 DEELLELLESLNPDLIVVAGYGRI-------------------LPKEFLSIPPYGIINI-----HPSLLPKY-------- 115 (181)
T ss_dssp HHHHHHHHHHTT-SEEEESS-SS----------------------HHHHHHSTTSEEEE-----ESSSTTTT--------
T ss_pred hhHHHHHHHhhccceeehhhhHHH-------------------hhhhhhhcccccEEEE-----eecCCccC--------
Confidence 445788888888888877765433 6776665444322222 22333333
Q ss_pred cCchhHHHHHHhCCceeecccc
Q 012513 352 CGWNSILESIVHGVPIIAWPLY 373 (462)
Q Consensus 352 GG~~t~~eal~~GvP~v~~P~~ 373 (462)
=|+..+..|+..|....++-++
T Consensus 116 rG~~p~~~ai~~g~~~~G~Tvh 137 (181)
T PF00551_consen 116 RGASPIQWAILNGEKETGVTVH 137 (181)
T ss_dssp BSSTHHHHHHHHTSSEEEEEEE
T ss_pred CCcchhhhhhcCCcceeeeEEE
Confidence 3899999999999999887754
No 346
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=25.47 E-value=1.3e+02 Score=25.07 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=28.3
Q ss_pred CeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEe
Q 012513 254 ESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAK 291 (462)
Q Consensus 254 ~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~ 291 (462)
...|++.+||.-....+.++++++.+. .+.++++...
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 359999999986667888999998885 3567777554
No 347
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.45 E-value=6e+02 Score=25.38 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
+--|.|+-.=+.|-......||..++.+ |+.+.+++...|+.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkk-G~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKK-GYKVALVCADTFRA 142 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhc-CCceeEEeeccccc
Confidence 3456777777889999999999999887 99999999988876
No 348
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=25.41 E-value=4.6e+02 Score=25.69 Aligned_cols=69 Identities=20% Similarity=0.293 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCc-eEeccCcchhhhhcccccccccc
Q 012513 272 LNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVG-LVVPSWSPQVQVLRHGSTGGFLS 350 (462)
Q Consensus 272 ~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~~~~~~pq~~lL~~~~~~~~I~ 350 (462)
-..+.++|+-+..++|++..+... .+.....+|++..++++.++ ++.++|-+ -||.
T Consensus 255 ~atm~~aL~vS~APVIFSHSsA~~------------vcns~rNVPDdVL~llk~NgGvVMVnfy~-----------~~is 311 (419)
T KOG4127|consen 255 DATMRDALEVSRAPVIFSHSSAYS------------VCNSSRNVPDDVLQLLKENGGVVMVNFYP-----------GFIS 311 (419)
T ss_pred HHHHHHHHHhhcCceEeecccHHH------------HhcCccCCcHHHHHHHhhcCCEEEEEeec-----------cccc
Confidence 345778888888899998876432 12234678999999987664 54444322 3788
Q ss_pred ccCchhHHHHHHh
Q 012513 351 HCGWNSILESIVH 363 (462)
Q Consensus 351 HGG~~t~~eal~~ 363 (462)
++.--++.+++.|
T Consensus 312 c~~~A~v~~v~~H 324 (419)
T KOG4127|consen 312 CSDRATVSDVADH 324 (419)
T ss_pred CCCcccHHHHHHH
Confidence 7776667776544
No 349
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=25.20 E-value=87 Score=22.16 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCEEEEEeCCC
Q 012513 29 AQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 29 l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
+..|..|+++ |++|+++-...
T Consensus 9 l~aA~~L~~~-g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKA-GYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHT-TSEEEEEESSS
T ss_pred HHHHHHHHHC-CCcEEEEecCc
Confidence 5788999887 99999988653
No 350
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=25.19 E-value=1.2e+02 Score=24.79 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=25.6
Q ss_pred CccccCCCCCCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 1 METQNSKQIPRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 1 m~~~~~~~~~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
|+.+. +...+|+|.++--+=.| ..|++.|.++ ||+|+-+...
T Consensus 1 ~~~~~-~~~~~l~I~iIGaGrVG-----~~La~aL~~a-g~~v~~v~sr 42 (127)
T PF10727_consen 1 MNTPA-TQAARLKIGIIGAGRVG-----TALARALARA-GHEVVGVYSR 42 (127)
T ss_dssp ------------EEEEECTSCCC-----CHHHHHHHHT-TSEEEEESSC
T ss_pred CCccc-cCCCccEEEEECCCHHH-----HHHHHHHHHC-CCeEEEEEeC
Confidence 55443 34568999999887666 3789999887 9999877654
No 351
>PRK06749 replicative DNA helicase; Provisional
Probab=24.83 E-value=1.7e+02 Score=29.58 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=34.1
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
=|++..-|+.|--.-.+.+|...+.+ |+.|.|++.+....
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEMs~~ 227 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEMSSK 227 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeCCHH
Confidence 47778889999999999999999876 99999999885443
No 352
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=24.57 E-value=80 Score=29.88 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=25.0
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
|+|+++-.++.| ..+|..|.++ ||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHC-CCceEEEec
Confidence 578888777765 4678899887 999999885
No 353
>PRK12474 hypothetical protein; Provisional
Probab=24.29 E-value=1.8e+02 Score=30.21 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=20.3
Q ss_pred ccccccCch------hHHHHHHhCCceeecc
Q 012513 347 GFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
++++|.|-| .+.+|...++|||++-
T Consensus 71 v~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~ 101 (518)
T PRK12474 71 VTLLHLGPGLANGLANLHNARRAASPIVNIV 101 (518)
T ss_pred EEEEccchhHhHhHHHHHHHhhcCCCEEEEe
Confidence 677777744 6778999999999985
No 354
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=24.26 E-value=85 Score=25.92 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 23 GHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 23 GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
-.+--.+-|+..|..+ ||+|++++++
T Consensus 11 vq~p~alYl~~~Lk~~-G~~v~Va~np 36 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKK-GFEVVVAGNP 36 (139)
T ss_dssp THHHHHHHHHHHHHCT-TEEEEEEE-H
T ss_pred chhHHHHHHHHHHHhc-CCeEEEecCH
Confidence 3344577899999888 9999999987
No 355
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=23.99 E-value=1.3e+02 Score=29.75 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=45.0
Q ss_pred ccccccCchhHHHHHHhC-----------------CceeecccccchhhhhHHhhcccceeEE-eeecCCcccCHHHHHH
Q 012513 347 GFLSHCGWNSILESIVHG-----------------VPIIAWPLYSEQKMNAVLLTDDLKVSFR-VKVNENGLVGREDIAN 408 (462)
Q Consensus 347 ~~I~HGG~~t~~eal~~G-----------------vP~v~~P~~~DQ~~~a~rv~~~~g~G~~-~~~~~~~~~~~~~l~~ 408 (462)
.++|.||..+.+-|+.+. .|+|.++-.. |+-+.+-..- +|+|++ +...+++.+..++|++
T Consensus 106 G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~-lGlg~~~I~~~~~~~md~~~L~~ 183 (373)
T PF00282_consen 106 GVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARI-LGLGVRKIPTDEDGRMDIEALEK 183 (373)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHH-TTSEEEEE-BBTTSSB-HHHHHH
T ss_pred eeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcce-eeeEEEEecCCcchhhhHHHhhh
Confidence 789999988888776432 4566665332 5555555555 899865 3455567789999999
Q ss_pred HHHHHhcC
Q 012513 409 YAKGLIQG 416 (462)
Q Consensus 409 ai~~vl~~ 416 (462)
+|++...+
T Consensus 184 ~l~~~~~~ 191 (373)
T PF00282_consen 184 ALEKDIAN 191 (373)
T ss_dssp HHHHHHHT
T ss_pred hhcccccc
Confidence 99887554
No 356
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=23.96 E-value=8.7e+02 Score=25.64 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTID 51 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~ 51 (462)
.++|+++-.+ +--..++++..+. ||+|.++.+...
T Consensus 22 ~k~IgIIGgG-----qlg~mla~aA~~l-G~~Vi~ld~~~~ 56 (577)
T PLN02948 22 ETVVGVLGGG-----QLGRMLCQAASQM-GIKVKVLDPLED 56 (577)
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 4578887666 3445666667666 999999987654
No 357
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=23.84 E-value=1.7e+02 Score=23.41 Aligned_cols=40 Identities=18% Similarity=-0.027 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCcCCHHHHH---HHHHHHHhcCCCEEEEEeCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLA---QLAKRLVRQHNFLVSIFIPTID 51 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l---~La~~L~~r~GH~Vt~~~~~~~ 51 (462)
+|++++++-...|-.+.++ .|.++-+++ ||++.+=+-...
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~-G~~i~VE~qg~~ 44 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLE-KWGVKIETQGAL 44 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEecCCc
Confidence 4789999988889888876 455666555 999998775543
No 358
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.78 E-value=1.7e+02 Score=23.18 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCceEEEEeCC
Q 012513 271 QLNELALGLEMSGQRFLWVAKSP 293 (462)
Q Consensus 271 ~~~~i~~al~~~~~~~i~~~~~~ 293 (462)
...+++++|++++.+++.+...+
T Consensus 13 ia~r~~ra~r~~Gi~tv~v~s~~ 35 (110)
T PF00289_consen 13 IAVRIIRALRELGIETVAVNSNP 35 (110)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEGG
T ss_pred HHHHHHHHHHHhCCcceeccCch
Confidence 36679999999999988887754
No 359
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=23.73 E-value=63 Score=22.32 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=34.4
Q ss_pred ecCCcccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 012513 395 VNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQ 452 (462)
Q Consensus 395 ~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 452 (462)
...+|.++.+++...++.+.... ..+......+.+-+..+.++...-+++++++
T Consensus 11 ~d~~G~i~~~el~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 11 KDGDGYISKEELRRALKHLGRDM----SDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp TTSSSEEEHHHHHHHHHHTTSHS----THHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred CCccCCCCHHHHHHHHHHhcccc----cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 34467899999999999997532 1333333444444445566766667777665
No 360
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=23.70 E-value=51 Score=34.74 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.4
Q ss_pred ccccccCchh------HHHHHHhCCceeecc
Q 012513 347 GFLSHCGWNS------ILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG~~t------~~eal~~GvP~v~~P 371 (462)
++++|.|-|. +.+|.+.++|+|++-
T Consensus 77 v~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~ 107 (578)
T PRK06112 77 VVTAQNGPAATLLVAPLAEALKASVPIVALV 107 (578)
T ss_pred EEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 6777788765 999999999999985
No 361
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=23.55 E-value=1.2e+02 Score=29.77 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=29.9
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
|+.--..=+|++----+||+.|++++|+.|++.+-.
T Consensus 3 IFC~VIDNfGDIGVcWRLArqLa~e~g~~VrLwvDd 38 (374)
T PF10093_consen 3 IFCRVIDNFGDIGVCWRLARQLAAEHGQQVRLWVDD 38 (374)
T ss_pred eeEEeccCCcchHHHHHHHHHHHHHhCCeEEEEECC
Confidence 344445668999999999999999899999999854
No 362
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=23.50 E-value=5.9e+02 Score=23.50 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=31.5
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
-+++.-.|+.|=-.-.++++...+.+ |..|.|++.+.
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVES 74 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecC
Confidence 46667778999999999999988777 99999999874
No 363
>PRK05636 replicative DNA helicase; Provisional
Probab=23.47 E-value=3e+02 Score=28.51 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=32.8
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++...|+.|--.-.+.+|...+.++|..|.|++.+....
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ 307 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKS 307 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHH
Confidence 46778889999999999999887644599999998875443
No 364
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.36 E-value=1.8e+02 Score=27.79 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=24.0
Q ss_pred cccccccccccCchhHHHHHHh----CCceeeccc
Q 012513 342 HGSTGGFLSHCGWNSILESIVH----GVPIIAWPL 372 (462)
Q Consensus 342 ~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~ 372 (462)
.++ ++|.-||-||+++++.. ++|++++..
T Consensus 57 ~~d--~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LID--LAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcC--EEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 456 89999999999999864 788888775
No 365
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=23.31 E-value=1.9e+02 Score=30.19 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=21.4
Q ss_pred ccccccCch------hHHHHHHhCCceeecc
Q 012513 347 GFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
++++|.|-| .+.+|...++|+|++-
T Consensus 67 v~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 67 ACMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred EEEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 788888844 7899999999999984
No 366
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=23.19 E-value=81 Score=32.19 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=25.9
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTID 51 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~ 51 (462)
|||+++--+- --+.-|.+|+++ ||+||++-....
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~-g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADA-GYDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhC-CCceEEEeccCc
Confidence 5677765554 347889999998 999999886543
No 367
>PLN02727 NAD kinase
Probab=23.19 E-value=1.2e+02 Score=33.63 Aligned_cols=54 Identities=19% Similarity=0.149 Sum_probs=39.6
Q ss_pred ccccccccccccCchhHHHHHHh----CCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHHhcC
Q 012513 341 RHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 416 (462)
Q Consensus 341 ~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~vl~~ 416 (462)
..++ ++|+=||=||++.|... ++|++.+-+. .+|..- + +..+++.+.|.+++.+
T Consensus 742 ~~~D--LVIvLGGDGTlLrAar~~~~~~iPILGINlG--------------rLGFLT---d---i~~ee~~~~L~~Il~G 799 (986)
T PLN02727 742 ERVD--FVACLGGDGVILHASNLFRGAVPPVVSFNLG--------------SLGFLT---S---HYFEDFRQDLRQVIHG 799 (986)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEeCC--------------Cccccc---c---CCHHHHHHHHHHHHcC
Confidence 3466 89999999999999775 5777665533 123222 2 6788999999999987
No 368
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=23.18 E-value=60 Score=29.95 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=22.7
Q ss_pred ccccccccccCchhHHHHHHh----CCceeeccc
Q 012513 343 GSTGGFLSHCGWNSILESIVH----GVPIIAWPL 372 (462)
Q Consensus 343 ~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~ 372 (462)
++ ++|+-||=||++.|+.. ++|++.+-.
T Consensus 26 ~D--lvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 AD--VIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CC--EEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 56 89999999999988664 678877664
No 369
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=23.06 E-value=84 Score=30.11 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=34.3
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcC-CCEEEEEeCCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQH-NFLVSIFIPTI 50 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~-GH~Vt~~~~~~ 50 (462)
|||+++-....|++.=...+.+.|+++. +.+|++++.+.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~ 40 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEG 40 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHH
Confidence 6899999999999999999999997754 79999999764
No 370
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=23.06 E-value=1.4e+02 Score=26.73 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDD 52 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~ 52 (462)
.+.+|.+=.-|+.|-..-|+.=|++|.++ |.+|.+-.-+...
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~vethg 45 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVETHG 45 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---TT
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecCCC
Confidence 46789999999999999999999999998 9999987766444
No 371
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=23.00 E-value=1.4e+02 Score=27.70 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=31.0
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
|+|++.-=++.|--.-...||..|+++ |++|.++=.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~-g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKL-GKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 678888668889999999999999987 999998843
No 372
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=22.93 E-value=2.3e+02 Score=29.72 Aligned_cols=25 Identities=24% Similarity=0.595 Sum_probs=20.8
Q ss_pred ccccccC------chhHHHHHHhCCceeecc
Q 012513 347 GFLSHCG------WNSILESIVHGVPIIAWP 371 (462)
Q Consensus 347 ~~I~HGG------~~t~~eal~~GvP~v~~P 371 (462)
+++.|.| .+.+++|-+.++|||++.
T Consensus 75 v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 75 AVIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred EEEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 6677777 448899999999999995
No 373
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=22.69 E-value=4.5e+02 Score=24.65 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=22.6
Q ss_pred hhhccccccccccccCchhHHHHHHhCCceeecc
Q 012513 338 QVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWP 371 (462)
Q Consensus 338 ~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P 371 (462)
.++.+++ ++|+-= +-++.-|+.+|||.++++
T Consensus 246 ~~i~~~~--~vI~~R-lH~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 246 GLFASAR--LVIGMR-LHALILAAAAGVPFVALS 276 (298)
T ss_pred HHHhhCC--EEEEec-hHHHHHHHHcCCCEEEee
Confidence 4577777 777742 235777899999999885
No 374
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=22.67 E-value=1.9e+02 Score=25.17 Aligned_cols=56 Identities=5% Similarity=-0.015 Sum_probs=36.5
Q ss_pred cCHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHhhcCCCCChHHH--------HHHHHHHHhcCCcc
Q 012513 401 VGREDIANYAKGL--IQGEEGKLLRKKMRALKDAAANALSPDGSSTKS--------LAQVAQRWKNPEIE 460 (462)
Q Consensus 401 ~~~~~l~~ai~~v--l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~--------~~~~~~~l~~~~~~ 460 (462)
.+.++|.+.|+.. +.+ -|+.+|+.+++.++..+++-|+.-.. -.++.+.|.+..|.
T Consensus 58 a~~eeL~~lI~~~pal~G----fy~~KAk~Lk~~a~~iie~y~G~v~~L~~~~~p~t~~lre~Ll~LpGV 123 (177)
T TIGR03252 58 YDPQAFVALFSERPAVHR----FPGSMAKRVQALAQYVVDTYDGDATAVWTEGDPDGKELLRRLKALPGF 123 (177)
T ss_pred CCHHHHHHHHhcCccccC----chHHHHHHHHHHHHHHHHHhCCChhhhhcccCCCcHHHHHHHHcCCCC
Confidence 6788899888765 334 68899999988888776554433211 13345666666554
No 375
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=22.63 E-value=1.6e+02 Score=27.15 Aligned_cols=37 Identities=27% Similarity=0.184 Sum_probs=30.1
Q ss_pred cEEEEEcC-CCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 12 AHVAMVPT-PGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~-p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
.+|+++.. ++.|-..=...||..|++. |++|..+=-.
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~-G~~VlaID~d 39 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARL-GESVLAIDLD 39 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 35555555 7999999999999999887 9999988643
No 376
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.49 E-value=1.3e+02 Score=30.12 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 10 PRAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 10 ~~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
+++||++.-.++. ...=...|.++|.+. |++|.++.++.
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~-g~~V~vv~T~~ 43 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKA-GADVRVVMTEA 43 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhC-CCEEEEEECHh
Confidence 3567888777764 566789999999887 99999998874
No 377
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=22.40 E-value=3e+02 Score=25.20 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCceEecc
Q 012513 253 SESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPS 332 (462)
Q Consensus 253 ~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ 332 (462)
..+.|..+|=.+.....+.++++++.+++.+..-+..++.+.. ..-.+| +..
T Consensus 144 G~G~ilAn~ReiP~~a~e~~~~il~~l~~~g~~Gil~iG~p~~---------------~vlgvp-------------v~~ 195 (236)
T PF01995_consen 144 GEGKILANFREIPMSAREKAEEILEKLEKAGFSGILEIGEPNE---------------PVLGVP-------------VEP 195 (236)
T ss_dssp SSSEEEEEEEEEETTTHHHHHHHHHHH---T-TTEEEE--TT-----------------BTTB----------------T
T ss_pred CCceEeeeeecCchhHHHHHHHHHHHhhhcccceeEEeCCCCC---------------cccCCc-------------cCC
Confidence 3468999998887778899999999999999888888887543 111122 210
Q ss_pred CcchhhhhccccccccccccCchhHHHHHHhCCceeecccc
Q 012513 333 WSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY 373 (462)
Q Consensus 333 ~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~ 373 (462)
.+. .++.-||.|-+.-+..+|.|+=+-+..
T Consensus 196 --------~~~---Giv~~GG~Npia~~~E~Gi~i~~~~~~ 225 (236)
T PF01995_consen 196 --------GMV---GIVVIGGLNPIAAAVEAGIPIEIKAMS 225 (236)
T ss_dssp --------TEE---EEEEE-TTHHHHHHHHTT---EEEEEE
T ss_pred --------CeE---EEEEEecCcHHHHHHHcCCeeEeeehh
Confidence 122 367779999999999999998665543
No 378
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=22.28 E-value=1.4e+02 Score=23.59 Aligned_cols=35 Identities=23% Similarity=-0.000 Sum_probs=30.2
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
++..+.++-.|-.....++..|.++ |++|.++...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~-G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDN-GFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHC-CCEEEEcCCC
Confidence 5777788889999999999999887 9999998654
No 379
>PRK08840 replicative DNA helicase; Provisional
Probab=22.12 E-value=4.6e+02 Score=26.82 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=33.3
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
=+++..-|+.|--.-.+.+|...+.++|+.|.|++.+....
T Consensus 219 LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ 259 (464)
T PRK08840 219 LIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAE 259 (464)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHH
Confidence 36777889999999999999998644599999999885443
No 380
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=22.01 E-value=2.7e+02 Score=28.60 Aligned_cols=40 Identities=8% Similarity=0.110 Sum_probs=34.4
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++.-.|+.|--.=.++++.+.+++ |..|.+++.++...
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~ 304 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRA 304 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHH
Confidence 47777788999999999999999887 99999999886554
No 381
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=21.63 E-value=1.5e+02 Score=27.48 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=31.7
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
|.|.+.-=++.|--.-...||..|+++ |++|.++=..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~-G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKR-GKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHC-CCcEEEEecC
Confidence 567788678999999999999999887 9999988543
No 382
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=21.55 E-value=96 Score=27.09 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=25.2
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
|++.-.++.|-.. ...|.++|.++ |++|.++.++.
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~-g~~V~vv~T~~ 36 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEA-GVEVHLVISDW 36 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHC-CCEEEEEECcc
Confidence 4444445545444 48899999887 99999998873
No 383
>PRK07773 replicative DNA helicase; Validated
Probab=21.49 E-value=3.9e+02 Score=29.96 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=33.7
Q ss_pred EEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 13 HVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 13 ~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
-+++..-|+.|--.-.+.+|...+.++|..|.|++.+....
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ 259 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKE 259 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence 47777889999999999999998755589999999875444
No 384
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=21.48 E-value=5.4e+02 Score=22.27 Aligned_cols=109 Identities=15% Similarity=0.065 Sum_probs=48.7
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCC-CCCCCCCchhhhhhhcCCCCeeEEeCCCCCCCCCCCCCc
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTID-DGTGSFMQPQRQVLESLPTSISTIFLPPVSLDDLPDNVP 90 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 90 (462)
-.|-+++..+.|-....+.+|-+-+-+ |.+|.++-.--- .. ......+..++ ++.+........+. .+
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~-G~rV~ivQFlKg~~~-----~GE~~~l~~l~-~~~~~~~g~~f~~~----~~ 72 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGH-GMRVLIVQFLKGGRY-----SGELKALKKLP-NVEIERFGKGFVWR----MN 72 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCT-T--EEEEESS--SS-------HHHHHHGGGT---EEEE--TT--------GG
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhC-CCEEEEEEEecCCCC-----cCHHHHHHhCC-eEEEEEcCCccccc----CC
Confidence 357888888999888766666666544 777777764211 11 12233344443 36666554311111 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEeCCCcchHHHHHHHcCC
Q 012513 91 IETRIILTLVRSLSSLRDALKVLTESTRLVALVVDCFGSAAFDVANELDV 140 (462)
Q Consensus 91 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgI 140 (462)
... .........+. ..++.+.+..+|+||.|-... |-.+|+
T Consensus 73 ~~~---~~~~~~~~~~~-~a~~~i~~~~~dlvILDEi~~-----a~~~gl 113 (172)
T PF02572_consen 73 EEE---EDRAAAREGLE-EAKEAISSGEYDLVILDEINY-----AVDYGL 113 (172)
T ss_dssp GHH---HHHHHHHHHHH-HHHHHTT-TT-SEEEEETHHH-----HHHTTS
T ss_pred CcH---HHHHHHHHHHH-HHHHHHhCCCCCEEEEcchHH-----HhHCCC
Confidence 111 11222223332 233344556899999998543 444555
No 385
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=21.38 E-value=1.5e+02 Score=24.01 Aligned_cols=38 Identities=16% Similarity=0.390 Sum_probs=26.8
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHHHHhC--CCceEEEEeC
Q 012513 255 SVLFVCFGSGGTLSQEQLNELALGLEMS--GQRFLWVAKS 292 (462)
Q Consensus 255 ~~v~vs~Gs~~~~~~~~~~~i~~al~~~--~~~~i~~~~~ 292 (462)
.+|.++|||......+.+.++.+.+++. +..+-|.+.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 4899999997654455677888888543 3466777654
No 386
>PRK10637 cysG siroheme synthase; Provisional
Probab=21.36 E-value=8.4e+02 Score=24.81 Aligned_cols=108 Identities=7% Similarity=0.020 Sum_probs=55.2
Q ss_pred hhhhhccccccccccccCchhHHHHHH-----hCCceeecccccchhhhh-----HHhhcccceeEEeeecCCcccCHHH
Q 012513 336 QVQVLRHGSTGGFLSHCGWNSILESIV-----HGVPIIAWPLYSEQKMNA-----VLLTDDLKVSFRVKVNENGLVGRED 405 (462)
Q Consensus 336 q~~lL~~~~~~~~I~HGG~~t~~eal~-----~GvP~v~~P~~~DQ~~~a-----~rv~~~~g~G~~~~~~~~~~~~~~~ 405 (462)
+..-|..+. ++|.--+--.+.+.++ .|+++-++ |++..+ ..+.+ -++-+.+........-...
T Consensus 66 ~~~dl~~~~--lv~~at~d~~~n~~i~~~a~~~~~lvN~~----d~~~~~~f~~pa~~~~-g~l~iaisT~G~sP~~a~~ 138 (457)
T PRK10637 66 DESLLDTCW--LAIAATDDDAVNQRVSEAAEARRIFCNVV----DAPKAASFIMPSIIDR-SPLMVAVSSGGTSPVLARL 138 (457)
T ss_pred ChHHhCCCE--EEEECCCCHHHhHHHHHHHHHcCcEEEEC----CCcccCeEEEeeEEec-CCEEEEEECCCCCcHHHHH
Confidence 344455566 5555555444444433 45665443 433322 22333 2344444443322334567
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 012513 406 IANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVA 451 (462)
Q Consensus 406 l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 451 (462)
|++.|++.+. ++...+-+.+.++++.+++.+......+.-+++++
T Consensus 139 lr~~ie~~~~-~~~~~~~~~~~~~R~~~k~~~~~~~~r~~~~~~~~ 183 (457)
T PRK10637 139 LREKLESLLP-QHLGQVAKYAGQLRGRVKQQFATMGERRRFWEKLF 183 (457)
T ss_pred HHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 8888888873 33345666777777777765443333333444444
No 387
>PRK13337 putative lipid kinase; Reviewed
Probab=21.21 E-value=2.8e+02 Score=26.37 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=21.9
Q ss_pred ccccccCchhHHHHHHh------CCceeecccc
Q 012513 347 GFLSHCGWNSILESIVH------GVPIIAWPLY 373 (462)
Q Consensus 347 ~~I~HGG~~t~~eal~~------GvP~v~~P~~ 373 (462)
++|..||=||+.|++-. ..|+-++|..
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 79999999999888752 3578899964
No 388
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=21.15 E-value=2.2e+02 Score=29.98 Aligned_cols=28 Identities=7% Similarity=0.254 Sum_probs=21.6
Q ss_pred ccccccccCc------hhHHHHHHhCCceeeccc
Q 012513 345 TGGFLSHCGW------NSILESIVHGVPIIAWPL 372 (462)
Q Consensus 345 ~~~~I~HGG~------~t~~eal~~GvP~v~~P~ 372 (462)
.+++++|.|- +.+++|.+.++|+|++.-
T Consensus 76 ~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~G 109 (569)
T PRK08327 76 PQAVMVHVDVGTANALGGVHNAARSRIPVLVFAG 109 (569)
T ss_pred CeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEec
Confidence 3367777674 488999999999998853
No 389
>PRK02399 hypothetical protein; Provisional
Probab=21.15 E-value=6.4e+02 Score=25.19 Aligned_cols=97 Identities=9% Similarity=0.001 Sum_probs=54.4
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHHHHHHHhCCCceEEEEeCCcccccccccccccCCCCCCCCCChhHHHhhCCCce-Eec
Q 012513 253 SESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGL-VVP 331 (462)
Q Consensus 253 ~~~~v~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-~~~ 331 (462)
+||.|-+|+ ......-...+.+.|++.++.++.-+..+.. + .-+++-..+.-+ -|.
T Consensus 185 ~kp~Ig~Tm---fGvTtp~v~~~~~~Le~~GyEvlVFHATG~G----------G----------raME~Li~~G~~~gVl 241 (406)
T PRK02399 185 DKPLIGLTM---FGVTTPCVQAAREELEARGYEVLVFHATGTG----------G----------RAMEKLIDSGLIAGVL 241 (406)
T ss_pred CCceEEEec---CCCcHHHHHHHHHHHHhCCCeEEEEcCCCCc----------h----------HHHHHHHHcCCceEEE
Confidence 355777654 3335677888899999998876654433211 0 011111111111 123
Q ss_pred cCcchhhhhccccccccccccCchhHHHHHHhCCceeecccccc
Q 012513 332 SWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSE 375 (462)
Q Consensus 332 ~~~pq~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~D 375 (462)
+...++..=-... =|..+|-.=+..|...|+|+|+.|=..|
T Consensus 242 DlTttEv~d~l~G---Gv~sagp~Rl~Aa~~~gIP~Vvs~GalD 282 (406)
T PRK02399 242 DLTTTEVCDELFG---GVLAAGPDRLEAAARTGIPQVVSPGALD 282 (406)
T ss_pred EcchHHHHHHHhC---cCccCCccHHHHHHHcCCCEEecCCcee
Confidence 5555542221122 3555677788889999999998886555
No 390
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.12 E-value=1.9e+02 Score=23.95 Aligned_cols=40 Identities=8% Similarity=-0.004 Sum_probs=26.1
Q ss_pred cEEEEEcCCCc--CCHHHHHHHHHHHHhcCCCEEEEEeCCCC
Q 012513 12 AHVAMVPTPGM--GHLIPLAQLAKRLVRQHNFLVSIFIPTID 51 (462)
Q Consensus 12 ~~ill~~~p~~--GHv~P~l~La~~L~~r~GH~Vt~~~~~~~ 51 (462)
|+|+++....+ |+..-+...+.+..++.|++|.++-....
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~ 42 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY 42 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTS
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 67777766544 77777666555554444999999876543
No 391
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=21.09 E-value=1.2e+02 Score=25.17 Aligned_cols=32 Identities=16% Similarity=-0.003 Sum_probs=27.1
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEE
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSI 45 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~ 45 (462)
++.+++-+..|..-.++||..|.+.+|.+|.+
T Consensus 4 fI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 4 FISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 56777789999999999999997755888875
No 392
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.93 E-value=4.7e+02 Score=22.27 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=34.0
Q ss_pred ccCchhHHHHHH--hCCceeecccccchhhhhHHhhcccceeEEeeecCCcccCHHHHHHHHHHH
Q 012513 351 HCGWNSILESIV--HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGL 413 (462)
Q Consensus 351 HGG~~t~~eal~--~GvP~v~~P~~~DQ~~~a~rv~~~~g~G~~~~~~~~~~~~~~~l~~ai~~v 413 (462)
-+|+.+++..+. .|+|+-.+ ..|.-+||..++. .=++ .+.++|.+.++.-
T Consensus 89 l~G~daLlS~vqmP~gvpvatv--~I~~~~nAa~~Aa-qIl~----------~~d~~l~~kl~~~ 140 (156)
T TIGR01162 89 LSGLDSLLSIVQMPSGVPVATV--AIGNAGNAALLAA-QILG----------IKDPELAEKLKEY 140 (156)
T ss_pred CCCHHHHHHHhcCCCCCeeEEE--EcCChhHHHHHHH-HHHc----------CCCHHHHHHHHHH
Confidence 468888888888 89995554 4457778887666 1122 5666777777544
No 393
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=20.85 E-value=1.1e+02 Score=27.65 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=23.5
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
|+++++-.+-.| ..+|+.|.++ ||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~-g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEE-GHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhC-CCceEEEEcC
Confidence 455665555433 6899999988 9999998754
No 394
>PRK04296 thymidine kinase; Provisional
Probab=20.80 E-value=5.2e+02 Score=22.49 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEEEcCC-CcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 13 HVAMVPTP-GMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 13 ~ill~~~p-~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
.|.+++.+ +.|=-.=++.++.++..+ |..|.++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEec
Confidence 35666655 999999999999999887 999998854
No 395
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=20.76 E-value=6.5e+02 Score=27.01 Aligned_cols=31 Identities=3% Similarity=0.045 Sum_probs=20.3
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
|||+|+..|.. .+..-++|.++ ||+|..+.+
T Consensus 1 mkivf~g~~~~-----a~~~l~~L~~~-~~~i~~V~t 31 (660)
T PRK08125 1 MKAVVFAYHDI-----GCVGIEALLAA-GYEIAAVFT 31 (660)
T ss_pred CeEEEECCCHH-----HHHHHHHHHHC-CCcEEEEEe
Confidence 67888865542 24445777777 999984443
No 396
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=20.71 E-value=1.4e+02 Score=25.35 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=23.6
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
.+|+++-.+.. -...++.|.+. ||+|+++.++
T Consensus 14 ~~vlVvGGG~v-----a~rka~~Ll~~-ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKI-----AYRKASGLKDT-GAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhC-CCEEEEEcCc
Confidence 46777755543 37788899887 9999999654
No 397
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=20.65 E-value=1.3e+02 Score=29.97 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
.+||++.-.++ +...-...+.++|.+. |++|.++.++.
T Consensus 3 ~k~IllgiTGS-iaa~~~~~ll~~L~~~-g~~V~vv~T~~ 40 (390)
T TIGR00521 3 NKKILLGVTGG-IAAYKTVELVRELVRQ-GAEVKVIMTEA 40 (390)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHhC-CCEEEEEECHh
Confidence 45788777776 4556689999999887 99999998874
No 398
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=20.57 E-value=1.8e+02 Score=27.54 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=32.5
Q ss_pred cEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 12 AHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 12 ~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
|+|+++-=++.|--.-...||..|+++ |++|.++-..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~-G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARR-GKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEecc
Confidence 568888889999999999999999887 9999988653
No 399
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=20.48 E-value=2.3e+02 Score=22.60 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=27.7
Q ss_pred EEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 012513 14 VAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPT 49 (462)
Q Consensus 14 ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~ 49 (462)
++++.++..++-.-+..+++.|+++ |+.|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~-G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQ-GYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHT-TEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHC-CCEEEEEecC
Confidence 3566667667788899999999987 9998887544
No 400
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=20.43 E-value=1.1e+02 Score=30.14 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=31.7
Q ss_pred ceEeccCcch---hhhhccccccccccccCchhHHHHHHhCCceee
Q 012513 327 GLVVPSWSPQ---VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIA 369 (462)
Q Consensus 327 ~~~~~~~~pq---~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~ 369 (462)
.+.+..|+|| +.+|-.|++ .|| =|=-|+.-|..+|+|.|=
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~-NfV--RGEDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDF-NFV--RGEDSFVRAQWAGKPFVW 287 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCcc-ceE--ecchHHHHHHHhCCCceE
Confidence 4667799998 789999994 333 366799999999999973
No 401
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=20.43 E-value=64 Score=34.11 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=21.7
Q ss_pred cccccccCch------hHHHHHHhCCceeecc
Q 012513 346 GGFLSHCGWN------SILESIVHGVPIIAWP 371 (462)
Q Consensus 346 ~~~I~HGG~~------t~~eal~~GvP~v~~P 371 (462)
+++++|.|-| ++++|...++|+|++-
T Consensus 78 gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 109 (585)
T CHL00099 78 GVCFATSGPGATNLVTGIATAQMDSVPLLVIT 109 (585)
T ss_pred EEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3777887744 8899999999999996
No 402
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=20.41 E-value=2.3e+02 Score=31.28 Aligned_cols=56 Identities=21% Similarity=0.372 Sum_probs=37.5
Q ss_pred cCHHHHHHHHHHH------hcCchHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcC
Q 012513 401 VGREDIANYAKGL------IQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQVAQRWKNP 457 (462)
Q Consensus 401 ~~~~~l~~ai~~v------l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 457 (462)
.+.+++.+....+ +++.+-..-.++.++.++.+++|++ +|.++.+|++++++|+++
T Consensus 474 ~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~-~gAsdeEI~~Lm~eLR~A 535 (851)
T TIGR02302 474 RTDDALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDALE-RGASDEEIKQLTDKLRAA 535 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 3555555555544 3344444566666666666776666 677888999999999875
No 403
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=20.39 E-value=1.9e+02 Score=28.95 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=30.5
Q ss_pred CcEEEEEcC--CCcCCHHHHHHHHHHHHhcCCCEEEEEeC
Q 012513 11 RAHVAMVPT--PGMGHLIPLAQLAKRLVRQHNFLVSIFIP 48 (462)
Q Consensus 11 ~~~ill~~~--p~~GHv~P~l~La~~L~~r~GH~Vt~~~~ 48 (462)
+|+|+.+.. |+.|--.-.+.||..|+.+ |++|.++=.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~-G~rVLlIDl 158 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQ-GYRVLAVDL 158 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCceEEEcC
Confidence 456555555 8999999999999999887 999998854
No 404
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=20.34 E-value=1.6e+02 Score=21.32 Aligned_cols=23 Identities=17% Similarity=0.016 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCEEEEEeCCC
Q 012513 27 PLAQLAKRLVRQHNFLVSIFIPTI 50 (462)
Q Consensus 27 P~l~La~~L~~r~GH~Vt~~~~~~ 50 (462)
.-+.+|..|.+. |++||++....
T Consensus 10 ig~E~A~~l~~~-g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAEL-GKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHT-TSEEEEEESSS
T ss_pred HHHHHHHHHHHh-CcEEEEEeccc
Confidence 457899999887 99999999753
No 405
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=20.15 E-value=2.5e+02 Score=26.29 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCcCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Q 012513 11 RAHVAMVPTPGMGHLIPLAQLAKRLVRQHNFLVSIFIPTIDDG 53 (462)
Q Consensus 11 ~~~ill~~~p~~GHv~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 53 (462)
+..|+|+..++.|--.-...||..|.++ |+.|.++....+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~~r~ 113 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDTFRA 113 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCCCCH
Confidence 3467777778999999999999999877 99999999775544
No 406
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=20.11 E-value=5.9e+02 Score=22.18 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=30.9
Q ss_pred CCceeeccc----ccch---hhhhHHhhcccceeEEeeec---------CCcccCHHHHHHHHHHHhc
Q 012513 364 GVPIIAWPL----YSEQ---KMNAVLLTDDLKVSFRVKVN---------ENGLVGREDIANYAKGLIQ 415 (462)
Q Consensus 364 GvP~v~~P~----~~DQ---~~~a~rv~~~~g~G~~~~~~---------~~~~~~~~~l~~ai~~vl~ 415 (462)
++|+|++|- .... ..|..++.+ .|+=+.-... ..+..+.++|.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 899999995 2233 345666766 6654433321 1124567888888777664
Done!