Query 012514
Match_columns 462
No_of_seqs 178 out of 1296
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:26:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 2E-68 4.3E-73 559.4 28.6 440 1-445 123-570 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 2E-53 4.3E-58 426.3 22.1 365 22-442 115-494 (498)
3 TIGR00926 2A1704 Peptide:H+ sy 100.0 1.2E-42 2.6E-47 371.0 37.5 358 23-438 84-654 (654)
4 PRK15462 dipeptide/tripeptide 100.0 1.1E-41 2.3E-46 352.7 33.6 379 25-443 101-487 (493)
5 PF00854 PTR2: POT family; In 100.0 2.4E-43 5.1E-48 357.6 14.8 340 19-380 28-371 (372)
6 PRK10207 dipeptide/tripeptide 100.0 3.2E-38 6.9E-43 330.3 34.5 373 25-448 106-489 (489)
7 TIGR00924 yjdL_sub1_fam amino 100.0 6.5E-37 1.4E-41 319.9 33.3 361 24-441 102-474 (475)
8 PRK09584 tppB putative tripept 100.0 3E-36 6.5E-41 316.7 33.0 368 24-446 112-490 (500)
9 PRK10489 enterobactin exporter 99.4 4.3E-11 9.3E-16 123.1 26.2 298 23-445 109-409 (417)
10 PRK11646 multidrug resistance 99.4 1E-10 2.2E-15 119.8 22.4 260 23-393 98-357 (400)
11 PRK03545 putative arabinose tr 99.3 1.5E-09 3.2E-14 110.6 26.6 84 23-112 96-179 (390)
12 PRK15402 multidrug efflux syst 99.3 3.4E-09 7.3E-14 108.5 29.4 85 23-113 100-184 (406)
13 TIGR00902 2A0127 phenyl propri 99.2 4.1E-09 8.9E-14 107.2 25.8 277 23-429 93-373 (382)
14 TIGR00893 2A0114 d-galactonate 99.2 6.6E-09 1.4E-13 104.4 27.1 86 23-114 81-166 (399)
15 TIGR00900 2A0121 H+ Antiporter 99.2 3E-09 6.5E-14 106.2 24.3 264 23-391 91-359 (365)
16 PRK09874 drug efflux system pr 99.2 1.8E-09 3.8E-14 110.3 22.7 293 23-435 106-398 (408)
17 PRK05122 major facilitator sup 99.2 1.2E-08 2.6E-13 104.1 28.2 278 24-435 112-389 (399)
18 PRK11128 putative 3-phenylprop 99.2 7.6E-09 1.7E-13 105.2 25.7 258 23-391 93-351 (382)
19 PRK11551 putative 3-hydroxyphe 99.2 2.1E-08 4.5E-13 102.5 29.0 84 23-112 102-185 (406)
20 cd06174 MFS The Major Facilita 99.2 8.7E-09 1.9E-13 101.9 25.4 263 23-432 86-349 (352)
21 PRK10504 putative transporter; 99.2 1E-08 2.2E-13 107.1 27.1 88 23-116 97-184 (471)
22 PRK10054 putative transporter; 99.2 2E-09 4.4E-14 110.1 21.2 82 24-112 96-177 (395)
23 PF05977 MFS_3: Transmembrane 99.2 1.6E-08 3.4E-13 106.8 27.4 264 21-392 100-366 (524)
24 TIGR00879 SP MFS transporter, 99.2 7.8E-09 1.7E-13 106.9 24.0 86 23-114 126-214 (481)
25 PRK14995 methyl viologen resis 99.2 8E-09 1.7E-13 108.9 24.3 310 23-392 93-410 (495)
26 PRK06814 acylglycerophosphoeth 99.1 8.1E-09 1.8E-13 119.6 25.6 285 23-392 107-393 (1140)
27 TIGR00892 2A0113 monocarboxyla 99.1 7.7E-09 1.7E-13 107.9 22.1 283 24-392 107-392 (455)
28 PF07690 MFS_1: Major Facilita 99.1 3.8E-09 8.3E-14 105.0 19.1 266 24-386 85-352 (352)
29 TIGR00894 2A0114euk Na(+)-depe 99.1 3.2E-08 6.9E-13 103.3 26.5 84 24-113 131-215 (465)
30 PRK11010 ampG muropeptide tran 99.1 6E-08 1.3E-12 102.2 27.2 86 22-113 105-191 (491)
31 PRK10077 xylE D-xylose transpo 99.1 5.3E-08 1.2E-12 101.7 26.1 84 24-113 120-211 (479)
32 TIGR00901 2A0125 AmpG-related 99.1 4.5E-08 9.8E-13 98.3 24.1 262 23-379 82-355 (356)
33 TIGR00711 efflux_EmrB drug res 99.1 2E-08 4.4E-13 104.9 22.1 308 23-392 89-407 (485)
34 PRK12382 putative transporter; 99.1 1.3E-07 2.7E-12 96.4 27.0 276 23-433 111-387 (392)
35 PRK11102 bicyclomycin/multidru 99.0 2.7E-07 5.8E-12 93.2 28.7 85 23-113 78-162 (377)
36 TIGR00899 2A0120 sugar efflux 99.0 1.4E-07 3E-12 95.0 26.0 88 23-114 86-173 (375)
37 TIGR00710 efflux_Bcr_CflA drug 99.0 3.1E-07 6.7E-12 92.7 28.4 87 23-115 92-178 (385)
38 TIGR00792 gph sugar (Glycoside 99.0 1.7E-07 3.7E-12 96.7 25.0 110 256-393 262-378 (437)
39 PRK11043 putative transporter; 99.0 1.9E-07 4.1E-12 95.4 24.9 85 23-113 93-177 (401)
40 PRK10473 multidrug efflux syst 99.0 5.2E-07 1.1E-11 91.9 27.6 84 23-112 90-173 (392)
41 PRK10213 nepI ribonucleoside t 99.0 5.3E-07 1.2E-11 92.2 27.1 83 22-110 106-188 (394)
42 PRK15011 sugar efflux transpor 98.9 3.6E-07 7.7E-12 93.3 25.4 72 39-114 120-191 (393)
43 PRK11663 regulatory protein Uh 98.9 3.3E-07 7.2E-12 94.9 25.1 82 23-110 110-191 (434)
44 TIGR00895 2A0115 benzoate tran 98.9 4.4E-07 9.5E-12 91.6 25.1 84 23-112 104-187 (398)
45 PRK09848 glucuronide transport 98.9 2.4E-07 5.1E-12 96.3 23.7 86 291-392 293-385 (448)
46 PRK12307 putative sialic acid 98.9 6.5E-07 1.4E-11 92.1 26.6 79 22-106 104-182 (426)
47 PRK03893 putative sialic acid 98.9 2.9E-07 6.3E-12 96.7 23.9 79 23-107 107-185 (496)
48 PRK11652 emrD multidrug resist 98.9 1.1E-06 2.4E-11 89.5 27.5 83 23-111 95-177 (394)
49 PRK09528 lacY galactoside perm 98.9 1.2E-07 2.6E-12 97.7 20.3 138 255-436 266-404 (420)
50 TIGR00890 2A0111 Oxalate/Forma 98.9 2.3E-07 4.9E-12 92.9 21.9 84 23-113 90-173 (377)
51 PRK15403 multidrug efflux syst 98.9 1.4E-06 2.9E-11 89.8 28.1 84 23-112 103-186 (413)
52 TIGR00898 2A0119 cation transp 98.9 1.1E-06 2.5E-11 92.5 28.0 83 23-114 179-261 (505)
53 PRK09705 cynX putative cyanate 98.9 7.1E-07 1.5E-11 91.2 25.3 80 23-109 96-176 (393)
54 PRK03633 putative MFS family t 98.9 6.4E-07 1.4E-11 91.0 24.6 67 23-95 93-159 (381)
55 PRK11195 lysophospholipid tran 98.9 9.3E-07 2E-11 90.4 25.7 76 28-110 92-167 (393)
56 PRK11902 ampG muropeptide tran 98.9 3.8E-06 8.1E-11 86.0 30.0 84 23-112 93-177 (402)
57 PRK08633 2-acyl-glycerophospho 98.9 7.2E-07 1.6E-11 103.4 27.6 267 24-391 103-380 (1146)
58 TIGR01301 GPH_sucrose GPH fami 98.9 1.7E-06 3.8E-11 90.1 26.9 332 25-437 115-473 (477)
59 PRK11273 glpT sn-glycerol-3-ph 98.8 2.1E-06 4.5E-11 89.5 26.9 83 23-111 119-202 (452)
60 TIGR00883 2A0106 metabolite-pr 98.8 8E-07 1.7E-11 89.5 22.5 81 25-111 97-185 (394)
61 TIGR00889 2A0110 nucleoside tr 98.8 8.9E-07 1.9E-11 91.3 22.3 145 255-436 255-403 (418)
62 PRK10642 proline/glycine betai 98.8 5.8E-06 1.3E-10 87.1 27.8 76 26-107 120-203 (490)
63 TIGR00891 2A0112 putative sial 98.8 1.7E-06 3.7E-11 87.7 22.9 82 23-110 99-182 (405)
64 PRK10091 MFS transport protein 98.8 3.1E-06 6.7E-11 86.0 24.6 83 23-111 90-172 (382)
65 TIGR01299 synapt_SV2 synaptic 98.7 9E-06 1.9E-10 89.2 28.6 86 23-114 254-352 (742)
66 PF13347 MFS_2: MFS/sugar tran 98.7 3.5E-06 7.6E-11 87.1 23.9 308 24-439 103-425 (428)
67 PRK09669 putative symporter Ya 98.7 6.7E-06 1.5E-10 85.4 25.8 60 333-392 319-385 (444)
68 TIGR00881 2A0104 phosphoglycer 98.7 9.8E-07 2.1E-11 88.3 18.8 86 23-114 82-168 (379)
69 PRK10406 alpha-ketoglutarate t 98.7 1.5E-05 3.2E-10 82.5 28.0 80 24-109 124-211 (432)
70 TIGR00903 2A0129 major facilit 98.7 8.9E-06 1.9E-10 82.5 25.7 82 23-111 78-159 (368)
71 PRK09556 uhpT sugar phosphate 98.7 3.5E-06 7.6E-11 88.1 23.4 84 22-111 120-206 (467)
72 TIGR00926 2A1704 Peptide:H+ sy 98.7 7.7E-07 1.7E-11 96.2 18.8 252 23-319 81-342 (654)
73 TIGR00882 2A0105 oligosacchari 98.7 4.6E-06 9.9E-11 85.1 23.6 76 28-112 103-178 (396)
74 PRK03699 putative transporter; 98.7 1.6E-05 3.5E-10 81.1 27.5 84 23-112 94-178 (394)
75 TIGR00788 fbt folate/biopterin 98.7 9.3E-07 2E-11 92.6 18.5 87 25-115 121-207 (468)
76 PRK09952 shikimate transporter 98.6 2.9E-05 6.3E-10 80.6 28.2 77 26-108 127-211 (438)
77 PRK15075 citrate-proton sympor 98.6 1.4E-05 3E-10 82.8 25.5 73 26-104 119-199 (434)
78 TIGR00887 2A0109 phosphate:H+ 98.6 1.7E-05 3.6E-10 83.8 26.4 82 24-111 115-219 (502)
79 COG2814 AraJ Arabinose efflux 98.6 5.3E-05 1.1E-09 76.4 28.2 88 22-115 99-186 (394)
80 TIGR00897 2A0118 polyol permea 98.6 4.7E-05 1E-09 78.0 28.6 76 23-104 104-180 (402)
81 KOG1330 Sugar transporter/spin 98.6 7.7E-08 1.7E-12 97.0 7.6 92 18-115 115-207 (493)
82 PLN00028 nitrate transmembrane 98.6 8.7E-06 1.9E-10 85.5 23.4 83 23-112 123-214 (476)
83 KOG2532 Permease of the major 98.6 5.5E-06 1.2E-10 86.3 21.5 304 25-435 129-447 (466)
84 PRK10429 melibiose:sodium symp 98.6 1.6E-05 3.5E-10 83.4 24.7 113 256-392 271-390 (473)
85 TIGR00712 glpT glycerol-3-phos 98.6 1.2E-05 2.6E-10 83.4 22.9 83 24-112 118-201 (438)
86 TIGR00896 CynX cyanate transpo 98.5 2.9E-05 6.3E-10 77.8 24.0 80 23-109 86-167 (355)
87 TIGR01272 gluP glucose/galacto 98.5 4E-05 8.6E-10 75.8 23.6 86 22-113 8-109 (310)
88 TIGR02718 sider_RhtX_FptX side 98.5 0.00012 2.5E-09 74.6 26.2 76 34-115 107-182 (390)
89 TIGR02332 HpaX 4-hydroxyphenyl 98.4 0.00014 3E-09 74.8 24.9 85 23-113 95-185 (412)
90 COG2271 UhpC Sugar phosphate p 98.4 6.9E-05 1.5E-09 75.3 20.7 90 23-118 116-208 (448)
91 PF03209 PUCC: PUCC protein; 98.3 0.00058 1.3E-08 68.7 27.2 264 23-390 88-358 (403)
92 TIGR00805 oat sodium-independe 98.3 0.00012 2.7E-09 79.5 22.1 87 23-115 171-279 (633)
93 PRK11462 putative transporter; 98.2 0.0011 2.5E-08 69.2 26.6 83 24-111 109-198 (460)
94 TIGR00885 fucP L-fucose:H+ sym 98.2 0.00068 1.5E-08 69.8 23.8 84 22-111 92-201 (410)
95 PF01306 LacY_symp: LacY proto 98.1 0.00037 8.1E-09 71.0 21.0 98 331-443 310-408 (412)
96 PRK10133 L-fucose transporter; 98.1 0.001 2.3E-08 69.0 24.9 63 22-90 115-177 (438)
97 KOG1330 Sugar transporter/spin 98.1 9.7E-06 2.1E-10 82.1 8.3 143 255-441 72-215 (493)
98 PF03825 Nuc_H_symport: Nucleo 98.1 0.0013 2.8E-08 67.4 24.1 86 340-437 308-397 (400)
99 PRK03545 putative arabinose tr 98.0 0.00014 3E-09 74.0 15.6 109 255-392 48-156 (390)
100 TIGR02332 HpaX 4-hydroxyphenyl 98.0 0.00027 5.9E-09 72.7 16.9 109 255-392 47-155 (412)
101 KOG3764 Vesicular amine transp 98.0 4.6E-05 9.9E-10 75.9 9.9 146 254-443 109-255 (464)
102 TIGR00886 2A0108 nitrite extru 97.9 0.00033 7.1E-09 70.2 16.2 78 23-107 90-178 (366)
103 PF07690 MFS_1: Major Facilita 97.9 0.00032 6.9E-09 69.5 15.9 133 254-430 35-167 (352)
104 TIGR00710 efflux_Bcr_CflA drug 97.9 0.00035 7.6E-09 70.3 16.1 110 254-392 43-152 (385)
105 COG2211 MelB Na+/melibiose sym 97.9 0.004 8.8E-08 64.3 23.0 64 22-90 110-173 (467)
106 PF03092 BT1: BT1 family; Int 97.9 0.00058 1.3E-08 70.8 17.1 89 23-115 85-173 (433)
107 TIGR00893 2A0114 d-galactonate 97.9 0.00025 5.4E-09 71.0 14.0 109 254-391 32-140 (399)
108 TIGR00711 efflux_EmrB drug res 97.9 0.00057 1.2E-08 71.4 17.1 110 254-392 40-149 (485)
109 PRK14995 methyl viologen resis 97.9 0.0015 3.2E-08 69.0 20.3 110 254-392 44-154 (495)
110 PRK11551 putative 3-hydroxyphe 97.8 0.0012 2.7E-08 67.2 18.9 108 254-390 53-160 (406)
111 PRK10054 putative transporter; 97.8 0.00076 1.6E-08 69.0 16.6 110 254-392 46-155 (395)
112 PRK10213 nepI ribonucleoside t 97.8 0.00092 2E-08 68.3 17.0 109 255-392 59-167 (394)
113 PRK11663 regulatory protein Uh 97.8 0.0011 2.3E-08 68.8 17.1 109 255-392 62-170 (434)
114 PF11700 ATG22: Vacuole efflux 97.8 0.067 1.4E-06 56.2 30.3 55 341-395 388-442 (477)
115 TIGR00900 2A0121 H+ Antiporter 97.7 0.0012 2.5E-08 65.7 16.1 115 254-392 37-151 (365)
116 COG2814 AraJ Arabinose efflux 97.7 0.0014 3.1E-08 66.2 16.5 139 254-436 51-189 (394)
117 PRK10091 MFS transport protein 97.7 0.0011 2.4E-08 67.3 15.7 109 254-391 41-149 (382)
118 TIGR00880 2_A_01_02 Multidrug 97.7 0.0019 4.2E-08 54.3 14.6 106 258-392 5-110 (141)
119 TIGR00891 2A0112 putative sial 97.7 0.0024 5.2E-08 64.6 17.8 110 254-392 50-159 (405)
120 KOG3764 Vesicular amine transp 97.7 0.0018 3.8E-08 64.8 15.8 89 22-115 157-245 (464)
121 PF06609 TRI12: Fungal trichot 97.6 0.018 3.9E-07 61.6 24.2 318 16-390 125-462 (599)
122 PRK11646 multidrug resistance 97.6 0.0027 5.9E-08 65.0 17.6 103 261-392 56-158 (400)
123 COG2807 CynX Cyanate permease 97.6 0.036 7.8E-07 55.1 24.1 85 23-114 98-183 (395)
124 TIGR00895 2A0115 benzoate tran 97.6 0.00071 1.5E-08 68.1 12.8 109 255-392 56-164 (398)
125 TIGR00885 fucP L-fucose:H+ sym 97.6 0.0027 5.8E-08 65.4 16.9 113 254-392 41-153 (410)
126 PRK03699 putative transporter; 97.6 0.0059 1.3E-07 62.2 19.3 108 255-391 46-153 (394)
127 KOG2533 Permease of the major 97.6 0.042 9E-07 57.8 25.5 85 22-112 132-222 (495)
128 PRK10473 multidrug efflux syst 97.6 0.003 6.4E-08 64.2 16.8 108 255-391 42-149 (392)
129 PRK15403 multidrug efflux syst 97.6 0.005 1.1E-07 63.4 18.3 108 256-392 56-163 (413)
130 PRK09556 uhpT sugar phosphate 97.5 0.00049 1.1E-08 71.9 10.6 112 255-390 68-179 (467)
131 PRK03633 putative MFS family t 97.5 0.0052 1.1E-07 62.3 17.6 110 254-392 44-153 (381)
132 PRK12307 putative sialic acid 97.5 0.0049 1.1E-07 63.2 17.3 109 254-391 56-164 (426)
133 PRK09874 drug efflux system pr 97.5 0.01 2.3E-07 60.2 19.5 108 255-392 58-165 (408)
134 PRK11102 bicyclomycin/multidru 97.5 0.0023 5.1E-08 64.4 14.5 109 255-392 30-138 (377)
135 KOG3762 Predicted transporter 97.5 0.0029 6.2E-08 65.6 14.8 146 248-441 403-553 (618)
136 PTZ00207 hypothetical protein; 97.5 0.0063 1.4E-07 65.2 18.1 119 291-438 90-208 (591)
137 TIGR00881 2A0104 phosphoglycer 97.5 0.00082 1.8E-08 67.1 10.9 104 255-387 34-137 (379)
138 PRK09705 cynX putative cyanate 97.5 0.0035 7.5E-08 64.0 15.6 108 254-391 47-154 (393)
139 TIGR00879 SP MFS transporter, 97.5 0.0031 6.7E-08 65.0 15.4 110 254-389 74-183 (481)
140 TIGR00712 glpT glycerol-3-phos 97.4 0.0049 1.1E-07 63.8 16.5 111 255-390 65-175 (438)
141 KOG2615 Permease of the major 97.4 0.0096 2.1E-07 59.4 17.2 58 336-393 355-412 (451)
142 KOG0569 Permease of the major 97.4 0.066 1.4E-06 55.9 24.2 86 24-115 116-203 (485)
143 TIGR00805 oat sodium-independe 97.4 0.0026 5.7E-08 69.2 14.7 129 254-393 71-232 (633)
144 PRK12382 putative transporter; 97.4 0.0029 6.4E-08 64.2 14.1 118 254-392 54-171 (392)
145 PRK10504 putative transporter; 97.4 0.012 2.6E-07 61.3 18.7 109 255-392 49-157 (471)
146 TIGR01299 synapt_SV2 synaptic 97.4 0.015 3.3E-07 64.2 19.8 107 255-390 206-312 (742)
147 TIGR00886 2A0108 nitrite extru 97.4 0.0077 1.7E-07 60.2 16.4 108 254-390 40-147 (366)
148 COG0738 FucP Fucose permease [ 97.4 0.064 1.4E-06 54.1 22.2 65 21-91 101-165 (422)
149 PRK15402 multidrug efflux syst 97.3 0.018 3.8E-07 58.8 19.0 107 256-391 53-159 (406)
150 PRK05122 major facilitator sup 97.3 0.00063 1.4E-08 69.3 8.3 96 24-125 302-397 (399)
151 PRK11273 glpT sn-glycerol-3-ph 97.3 0.0098 2.1E-07 61.9 17.3 107 256-387 68-174 (452)
152 COG2223 NarK Nitrate/nitrite t 97.3 0.037 8E-07 56.0 20.2 87 25-119 106-195 (417)
153 TIGR00894 2A0114euk Na(+)-depe 97.3 0.0029 6.3E-08 66.0 12.8 110 256-392 81-190 (465)
154 cd06174 MFS The Major Facilita 97.2 0.01 2.2E-07 58.3 15.6 110 254-392 37-146 (352)
155 TIGR00890 2A0111 Oxalate/Forma 97.2 0.0061 1.3E-07 60.7 14.1 107 254-390 41-147 (377)
156 PRK10077 xylE D-xylose transpo 97.2 0.019 4.1E-07 59.9 18.3 119 255-390 59-177 (479)
157 TIGR00903 2A0129 major facilit 97.2 0.012 2.6E-07 59.7 16.1 89 332-436 78-166 (368)
158 TIGR00880 2_A_01_02 Multidrug 97.2 0.0013 2.9E-08 55.3 7.7 86 23-114 50-135 (141)
159 PRK11195 lysophospholipid tran 97.2 0.011 2.3E-07 60.5 15.6 107 254-392 41-147 (393)
160 TIGR00924 yjdL_sub1_fam amino 97.2 0.0071 1.5E-07 63.5 14.5 142 255-439 52-196 (475)
161 PRK15034 nitrate/nitrite trans 97.2 0.21 4.6E-06 52.1 25.1 61 22-89 126-186 (462)
162 PRK03893 putative sialic acid 97.2 0.027 5.8E-07 59.1 18.8 109 255-392 59-167 (496)
163 TIGR00898 2A0119 cation transp 97.2 0.0045 9.8E-08 65.2 12.6 109 254-391 130-238 (505)
164 TIGR00806 rfc RFC reduced fola 97.1 0.044 9.5E-07 56.9 18.9 82 291-391 91-172 (511)
165 KOG2533 Permease of the major 97.1 0.0097 2.1E-07 62.5 14.4 94 333-436 134-228 (495)
166 TIGR00887 2A0109 phosphate:H+ 97.1 0.017 3.7E-07 61.0 16.5 113 256-391 61-173 (502)
167 PRK10133 L-fucose transporter; 97.1 0.042 9.1E-07 57.0 19.0 110 255-390 65-174 (438)
168 PRK11652 emrD multidrug resist 97.1 0.036 7.7E-07 56.3 18.1 109 255-392 47-155 (394)
169 TIGR00897 2A0118 polyol permea 97.1 0.022 4.9E-07 58.1 16.6 112 254-390 51-163 (402)
170 PRK10489 enterobactin exporter 97.1 0.019 4.1E-07 58.9 16.0 115 254-392 55-169 (417)
171 TIGR00892 2A0113 monocarboxyla 97.1 0.018 3.9E-07 60.1 16.0 135 255-434 58-193 (455)
172 KOG2504 Monocarboxylate transp 97.1 0.044 9.6E-07 58.0 18.8 118 291-440 364-481 (509)
173 PRK10207 dipeptide/tripeptide 97.0 0.012 2.5E-07 62.2 14.4 85 291-392 80-166 (489)
174 TIGR00901 2A0125 AmpG-related 97.0 0.021 4.5E-07 57.1 15.6 83 296-393 61-143 (356)
175 KOG0254 Predicted transporter 97.0 0.21 4.5E-06 53.0 23.7 84 23-112 141-225 (513)
176 PRK11010 ampG muropeptide tran 97.0 0.075 1.6E-06 56.0 19.8 106 270-392 60-166 (491)
177 PRK09584 tppB putative tripept 97.0 0.019 4.2E-07 60.7 15.3 117 293-441 89-207 (500)
178 PRK11043 putative transporter; 96.9 0.05 1.1E-06 55.4 17.7 108 255-391 45-152 (401)
179 PRK08633 2-acyl-glycerophospho 96.9 0.021 4.6E-07 66.5 16.5 114 254-393 50-163 (1146)
180 PF03209 PUCC: PUCC protein; 96.8 0.12 2.6E-06 52.3 18.4 92 294-390 52-146 (403)
181 TIGR00899 2A0120 sugar efflux 96.8 0.02 4.4E-07 57.3 13.2 139 255-437 37-178 (375)
182 KOG1237 H+/oligopeptide sympor 96.8 0.0045 9.8E-08 66.1 8.4 215 24-311 59-275 (571)
183 PF03137 OATP: Organic Anion T 96.7 0.00029 6.3E-09 74.9 -0.7 125 255-390 42-198 (539)
184 TIGR01301 GPH_sucrose GPH fami 96.7 0.047 1E-06 57.2 15.3 172 254-439 42-222 (477)
185 PRK06814 acylglycerophosphoeth 96.7 0.019 4.1E-07 67.0 13.8 62 332-393 107-168 (1140)
186 PRK11902 ampG muropeptide tran 96.6 0.057 1.2E-06 55.1 15.3 84 294-392 70-153 (402)
187 KOG0255 Synaptic vesicle trans 96.6 1.3 2.8E-05 46.9 29.4 83 21-112 168-250 (521)
188 PF05977 MFS_3: Transmembrane 96.5 0.036 7.9E-07 58.8 13.1 114 253-390 47-160 (524)
189 KOG3626 Organic anion transpor 96.5 0.022 4.8E-07 61.8 11.5 167 290-457 160-365 (735)
190 PRK10642 proline/glycine betai 96.5 0.037 8.1E-07 58.2 13.1 87 292-391 87-176 (490)
191 TIGR00883 2A0106 metabolite-pr 96.4 0.023 5E-07 56.9 10.8 89 294-392 67-155 (394)
192 PLN00028 nitrate transmembrane 96.4 0.24 5.2E-06 52.0 18.4 78 294-390 103-180 (476)
193 TIGR00792 gph sugar (Glycoside 96.3 0.018 3.9E-07 59.2 9.6 118 255-390 39-157 (437)
194 KOG2816 Predicted transporter 96.3 0.23 4.9E-06 51.9 17.3 84 294-396 310-393 (463)
195 TIGR00889 2A0110 nucleoside tr 96.3 0.01 2.2E-07 61.2 7.3 86 24-115 308-400 (418)
196 TIGR00806 rfc RFC reduced fola 96.2 1.9 4.1E-05 45.1 23.0 82 23-112 114-198 (511)
197 KOG2532 Permease of the major 96.2 0.055 1.2E-06 56.6 12.2 116 291-436 102-217 (466)
198 KOG2325 Predicted transporter/ 96.1 0.085 1.9E-06 54.9 13.0 157 254-440 74-234 (488)
199 KOG3626 Organic anion transpor 96.1 0.16 3.4E-06 55.4 15.1 92 23-120 236-346 (735)
200 TIGR00896 CynX cyanate transpo 96.0 0.19 4E-06 50.2 14.7 107 254-391 38-144 (355)
201 PRK15011 sugar efflux transpor 95.8 0.2 4.3E-06 50.9 14.4 60 333-392 105-166 (393)
202 COG2270 Permeases of the major 95.8 2.6 5.6E-05 43.1 22.0 88 291-396 317-404 (438)
203 KOG3098 Uncharacterized conser 95.8 3 6.6E-05 43.4 23.6 163 254-440 278-440 (461)
204 PRK10406 alpha-ketoglutarate t 95.7 0.15 3.4E-06 52.5 13.1 88 293-390 94-181 (432)
205 COG2271 UhpC Sugar phosphate p 95.7 0.17 3.8E-06 51.3 12.6 117 289-436 91-207 (448)
206 COG0738 FucP Fucose permease [ 95.7 0.46 1E-05 48.1 15.4 86 290-390 76-161 (422)
207 TIGR01272 gluP glucose/galacto 95.7 0.069 1.5E-06 52.7 9.7 62 332-393 9-70 (310)
208 PRK15462 dipeptide/tripeptide 95.7 0.18 3.8E-06 53.2 13.2 115 294-440 78-194 (493)
209 PRK15034 nitrate/nitrite trans 95.6 1.4 3E-05 46.1 19.5 85 291-389 99-187 (462)
210 PF00854 PTR2: POT family; In 95.2 0.12 2.7E-06 52.2 10.2 125 294-442 3-130 (372)
211 TIGR00882 2A0105 oligosacchari 95.1 0.25 5.4E-06 50.2 12.1 114 254-391 41-155 (396)
212 PRK15075 citrate-proton sympor 95.1 1 2.2E-05 46.4 16.7 85 294-391 88-175 (434)
213 PRK09952 shikimate transporter 94.9 0.4 8.6E-06 49.7 12.9 107 268-391 77-183 (438)
214 PRK11462 putative transporter; 94.8 0.22 4.7E-06 52.1 10.9 85 294-390 82-167 (460)
215 KOG0254 Predicted transporter 94.8 0.64 1.4E-05 49.3 14.4 103 254-385 92-194 (513)
216 PTZ00207 hypothetical protein; 94.6 8 0.00017 41.8 26.2 76 23-107 119-195 (591)
217 TIGR00902 2A0127 phenyl propri 94.3 0.67 1.5E-05 46.9 12.9 59 332-392 93-151 (382)
218 PF06609 TRI12: Fungal trichot 94.3 1.7 3.7E-05 46.8 16.0 120 240-391 69-188 (599)
219 PF11700 ATG22: Vacuole efflux 94.2 0.18 3.8E-06 53.1 8.4 87 23-115 379-466 (477)
220 KOG2615 Permease of the major 94.2 0.17 3.6E-06 50.8 7.6 103 262-394 79-181 (451)
221 PF05978 UNC-93: Ion channel r 94.1 1.4 3.1E-05 38.8 12.6 60 333-392 89-148 (156)
222 PRK09669 putative symporter Ya 93.7 0.29 6.2E-06 50.7 8.8 114 258-389 52-166 (444)
223 PRK09528 lacY galactoside perm 93.5 0.12 2.7E-06 52.9 5.7 85 24-114 315-400 (420)
224 KOG2325 Predicted transporter/ 93.4 0.88 1.9E-05 47.5 11.7 56 339-394 394-449 (488)
225 PRK11128 putative 3-phenylprop 93.3 0.98 2.1E-05 45.6 12.0 58 332-391 93-150 (382)
226 TIGR02718 sider_RhtX_FptX side 93.3 1.4 3.1E-05 44.5 13.0 86 333-433 97-182 (390)
227 PF06813 Nodulin-like: Nodulin 93.0 1.2 2.6E-05 42.6 11.1 121 291-439 65-185 (250)
228 PF00083 Sugar_tr: Sugar (and 92.9 0.00012 2.5E-09 76.0 -18.0 82 23-110 101-185 (451)
229 PRK10429 melibiose:sodium symp 92.4 1.3 2.8E-05 46.4 11.5 115 256-388 47-162 (473)
230 PF13347 MFS_2: MFS/sugar tran 92.2 0.21 4.5E-06 51.5 5.2 87 294-390 74-161 (428)
231 KOG2816 Predicted transporter 92.0 3.5 7.6E-05 43.1 14.0 99 261-391 72-170 (463)
232 KOG4686 Predicted sugar transp 91.5 9.5 0.00021 37.2 14.9 88 339-437 358-445 (459)
233 KOG2504 Monocarboxylate transp 90.8 1.3 2.7E-05 47.1 9.4 108 253-390 83-191 (509)
234 KOG2563 Permease of the major 90.5 7.5 0.00016 40.1 14.0 101 336-447 362-462 (480)
235 PRK09848 glucuronide transport 89.8 3.3 7.1E-05 42.8 11.5 109 255-380 48-157 (448)
236 PF03825 Nuc_H_symport: Nucleo 89.1 1.3 2.8E-05 45.5 7.6 83 28-116 305-394 (400)
237 KOG0569 Permease of the major 88.9 13 0.00029 39.0 14.9 58 332-389 115-172 (485)
238 COG2223 NarK Nitrate/nitrite t 88.0 17 0.00036 37.2 14.4 113 248-385 43-155 (417)
239 PF03092 BT1: BT1 family; Int 87.4 6.4 0.00014 40.8 11.6 83 294-391 61-146 (433)
240 KOG0255 Synaptic vesicle trans 85.4 9 0.0002 40.5 11.8 86 331-434 169-254 (521)
241 TIGR00939 2a57 Equilibrative N 83.7 18 0.0004 37.5 12.8 125 289-435 72-196 (437)
242 COG3202 ATP/ADP translocase [E 83.6 62 0.0013 34.0 17.1 53 341-393 152-208 (509)
243 PF03137 OATP: Organic Anion T 82.9 0.31 6.8E-06 52.0 -0.7 94 23-122 140-255 (539)
244 COG3104 PTR2 Dipeptide/tripept 81.4 2.9 6.4E-05 43.5 5.8 129 291-450 91-221 (498)
245 COG2807 CynX Cyanate permease 81.4 53 0.0012 33.2 14.2 84 290-393 75-158 (395)
246 PF01891 CbiM: Cobalt uptake s 79.5 25 0.00055 32.3 10.9 100 257-364 105-204 (205)
247 PF01306 LacY_symp: LacY proto 78.2 17 0.00036 37.4 10.0 26 254-279 46-71 (412)
248 PF00083 Sugar_tr: Sugar (and 78.1 0.03 6.4E-07 57.9 -10.2 59 332-390 101-159 (451)
249 KOG4686 Predicted sugar transp 78.1 4.2 9.2E-05 39.6 5.2 78 27-110 355-435 (459)
250 COG2211 MelB Na+/melibiose sym 74.7 87 0.0019 32.8 14.2 100 331-441 110-210 (467)
251 COG2270 Permeases of the major 70.8 6.9 0.00015 40.1 5.0 83 27-115 344-427 (438)
252 KOG4255 Uncharacterized conser 69.9 1.2E+02 0.0027 30.2 15.9 91 340-439 119-215 (439)
253 PF02487 CLN3: CLN3 protein; 67.7 55 0.0012 33.6 10.8 79 289-390 86-164 (402)
254 TIGR00788 fbt folate/biopterin 67.2 14 0.00031 38.6 6.8 77 27-109 354-435 (468)
255 KOG0253 Synaptic vesicle trans 66.7 1.6E+02 0.0035 30.2 19.2 88 20-115 162-250 (528)
256 KOG0637 Sucrose transporter an 66.0 62 0.0014 33.7 10.6 163 208-388 32-198 (498)
257 KOG0252 Inorganic phosphate tr 65.5 13 0.00028 38.7 5.7 149 251-426 81-233 (538)
258 PRK07331 cobalt transport prot 61.9 86 0.0019 31.1 10.6 104 258-366 107-220 (322)
259 PF01770 Folate_carrier: Reduc 61.0 2.1E+02 0.0044 29.6 14.2 60 332-392 93-152 (412)
260 PF07857 DUF1632: CEO family ( 58.8 25 0.00053 33.6 6.0 79 339-438 61-139 (254)
261 KOG3574 Acetyl-CoA transporter 57.9 15 0.00033 37.3 4.5 104 336-441 372-494 (510)
262 PRK11909 cobalt transport prot 57.3 1.6E+02 0.0036 27.6 11.2 35 333-367 183-218 (230)
263 PF08611 DUF1774: Fungal prote 57.3 45 0.00098 26.7 6.2 18 368-385 28-45 (97)
264 COG0477 ProP Permeases of the 55.4 48 0.001 30.5 7.6 79 23-106 93-174 (338)
265 KOG3098 Uncharacterized conser 52.5 1.6E+02 0.0035 30.8 11.2 63 333-395 102-164 (461)
266 PF05631 DUF791: Protein of un 52.2 46 0.00099 33.4 6.9 100 15-115 112-214 (354)
267 KOG0252 Inorganic phosphate tr 51.0 36 0.00077 35.6 6.0 68 44-111 62-129 (538)
268 TIGR00769 AAA ADP/ATP carrier 49.7 3.3E+02 0.0073 28.6 22.4 52 339-390 382-434 (472)
269 PF06123 CreD: Inner membrane 47.3 3E+02 0.0065 28.6 12.1 46 297-357 300-345 (430)
270 KOG1479 Nucleoside transporter 47.1 3.4E+02 0.0073 27.9 14.7 80 338-432 122-201 (406)
271 PRK08319 cobalt transport prot 46.8 2.5E+02 0.0054 26.3 10.7 31 337-367 183-213 (224)
272 TIGR00769 AAA ADP/ATP carrier 44.5 4E+02 0.0087 28.0 19.1 53 341-393 133-189 (472)
273 TIGR00123 cbiM cobalamin biosy 43.3 2.4E+02 0.0052 26.2 9.8 101 257-366 108-212 (214)
274 PRK11715 inner membrane protei 42.2 4.2E+02 0.0091 27.6 12.3 46 297-357 306-351 (436)
275 PF02699 YajC: Preprotein tran 41.8 17 0.00036 28.2 1.6 34 424-457 9-42 (82)
276 KOG3574 Acetyl-CoA transporter 40.5 1.4E+02 0.003 30.7 8.1 156 263-437 79-238 (510)
277 PRK05585 yajC preprotein trans 39.9 16 0.00035 29.9 1.3 35 423-457 24-58 (106)
278 PRK06265 cobalt transport prot 39.5 3E+02 0.0065 25.1 10.4 96 258-367 101-198 (199)
279 PF06645 SPC12: Microsomal sig 39.2 1.1E+02 0.0024 23.3 5.7 52 66-120 8-59 (76)
280 PF02487 CLN3: CLN3 protein; 38.7 2.7E+02 0.0058 28.6 10.2 60 332-391 334-393 (402)
281 PF03219 TLC: TLC ATP/ADP tran 37.1 1.3E+02 0.0029 31.8 7.9 73 35-112 293-366 (491)
282 cd08764 Cyt_b561_CG1275_like N 31.7 4.3E+02 0.0092 24.6 16.8 27 418-444 179-205 (214)
283 PF06963 FPN1: Ferroportin1 (F 30.4 6.4E+02 0.014 26.2 13.8 183 251-461 38-231 (432)
284 PF01733 Nucleoside_tran: Nucl 30.2 17 0.00037 35.7 0.0 82 341-437 5-86 (309)
285 TIGR00739 yajC preprotein tran 30.0 24 0.00053 27.5 0.8 33 425-457 11-43 (84)
286 PF11151 DUF2929: Protein of u 29.7 2.1E+02 0.0046 20.4 6.2 39 69-107 5-43 (57)
287 PF13000 Acatn: Acetyl-coenzym 29.2 1.4E+02 0.003 31.7 6.3 106 336-441 408-533 (544)
288 COG0477 ProP Permeases of the 27.6 2.4E+02 0.0051 25.7 7.4 58 333-390 94-153 (338)
289 PF14007 YtpI: YtpI-like prote 27.2 1.4E+02 0.003 23.6 4.6 52 73-125 35-86 (89)
290 COG3202 ATP/ADP translocase [E 26.6 7.9E+02 0.017 26.1 20.5 29 64-92 182-210 (509)
291 PF03219 TLC: TLC ATP/ADP tran 26.5 7.9E+02 0.017 26.0 18.7 54 341-394 148-205 (491)
292 PF01102 Glycophorin_A: Glycop 25.3 76 0.0016 26.7 3.0 24 417-440 71-94 (122)
293 PRK05886 yajC preprotein trans 24.4 44 0.00094 27.5 1.4 30 428-457 15-44 (109)
294 PF08121 Toxin_33: Waglerin fa 24.2 34 0.00074 18.6 0.5 6 6-11 4-9 (22)
295 PRK03612 spermidine synthase; 22.9 2.7E+02 0.0057 29.7 7.4 77 33-116 119-197 (521)
296 PF07172 GRP: Glycine rich pro 22.5 1.5E+02 0.0033 23.6 4.2 37 417-453 6-44 (95)
297 PF06570 DUF1129: Protein of u 22.0 6.1E+02 0.013 23.1 13.5 34 404-440 170-203 (206)
298 COG1862 YajC Preprotein transl 22.0 48 0.001 26.6 1.2 36 422-457 14-49 (97)
299 KOG3762 Predicted transporter 20.9 1.5E+02 0.0032 31.9 4.7 92 24-120 459-550 (618)
300 KOG2927 Membrane component of 20.5 1.7E+02 0.0037 29.2 4.7 38 350-390 198-235 (372)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-68 Score=559.41 Aligned_cols=440 Identities=41% Similarity=0.730 Sum_probs=392.4
Q ss_pred CcccccCcCC--C--C--CCCCCCCCcchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHH
Q 012514 1 MSWFVPSLRA--C--H--ADMCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSG 74 (462)
Q Consensus 1 ~~~~~~~~~~--c--~--~~~c~~~~~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~ 74 (462)
+++++|+++| | . +..|..++..+...++.+|.++++|+|++|||+.++++||||+.++++++.+.++|||+|+.
T Consensus 123 ~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~ 202 (571)
T KOG1237|consen 123 LSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFS 202 (571)
T ss_pred HHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHH
Confidence 3689999999 6 2 25799999999999999999999999999999999999999988887777778999999999
Q ss_pred HHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCc
Q 012514 75 LCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQ 154 (462)
Q Consensus 75 iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~ 154 (462)
+|+|++++..+..|+|++.||.++|+++++.|++++++|+.+++.|++++|.|+|+..+.+|+.++.++++...+.+++.
T Consensus 203 ~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~ 282 (571)
T KOG1237|consen 203 QNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE 282 (571)
T ss_pred HHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887666544322
Q ss_pred cccccccccccccccccccchhhhHhhhhcCCCC-CCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHH
Q 012514 155 LFEYPKVVAKGRLLCHTKNLEFLDKAAILEDYET-PVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTF 233 (462)
Q Consensus 155 l~~~~~~~~~~~~l~~~~~~~~ld~a~i~~~~~~-~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~ 233 (462)
+ +.+ ........+++..+++|+|++..+.+. .+...+||++|+.++|||+|.++|++|++...++||+++.|+.+.
T Consensus 283 ~-~~~--~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~ 359 (571)
T KOG1237|consen 283 L-YYD--CTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTF 359 (571)
T ss_pred c-ccc--ccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhh
Confidence 2 110 011122334567889999998765322 123457899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 012514 234 FIKQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVE 313 (462)
Q Consensus 234 ~~~qa~~~~~~~g~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~ 313 (462)
++.|+.+||++++.++++|+++++.+..+.++++.|+++++++|+.+|.+++|+++++++|+++|+++..+++.+++++|
T Consensus 360 ~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE 439 (571)
T KOG1237|consen 360 FVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVE 439 (571)
T ss_pred eehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHH
Confidence 99999999999983499999999999999999999999999999999999888889999999999999999999999999
Q ss_pred HHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514 314 KKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD 393 (462)
Q Consensus 314 ~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~ 393 (462)
.+|++.+.++. ...+++|++||+|||+++|+||+|.+++++||.|+|+|++||++.+++|+++.++|++++.++++++.
T Consensus 440 ~krl~~~~~~~-~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~ 518 (571)
T KOG1237|consen 440 AKRLKTAVSLL-VETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQ 518 (571)
T ss_pred HHHhhhhhhcc-CCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998775411 23468999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCcccc-CCCccchhHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 012514 394 HVTDKSGRSWFG-KDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQR 445 (462)
Q Consensus 394 ~~~~~~~~~w~~-~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~ 445 (462)
..+.. ..+|++ +|+|.+|+++|||+++++..++.+.|+.++++|++++.++
T Consensus 519 ~~t~~-~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 519 FSTGK-AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HhcCC-CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 87743 126999 9999999999999999999999999999999999886543
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-53 Score=426.31 Aligned_cols=365 Identities=18% Similarity=0.240 Sum_probs=285.7
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI 101 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i 101 (462)
.....++++|++|++|+|++|||++++++|||+++||| +|.+|++||+++|+|++++|++++++++++||+.+|++
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 34788999999999999999999999999999999985 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcccceeecC--CCCCCchh------H---HHHHHHHH-HhCCCCCCCCCCcccccccccccccccc
Q 012514 102 ITIVMAVSLLIFIIGRPFYRYRV--PKGSPLTP------M---LQVLVAAI-AKRNLPHPSDPDQLFEYPKVVAKGRLLC 169 (462)
Q Consensus 102 ~~i~~~~~~iifl~~~~~~~~~~--p~~~~~~~------~---~~vl~~a~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~ 169 (462)
++++|.+++++|+++++++.+.. |+.+|.+. . ..++..+. ... +
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l-------------- 246 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL----------L-------------- 246 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH----------H--------------
Confidence 99999999999999999877653 33333321 0 11111110 000 0
Q ss_pred ccccchh-hhHhhh-hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHH-HHhccCCC
Q 012514 170 HTKNLEF-LDKAAI-LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA-ATMNREIG 246 (462)
Q Consensus 170 ~~~~~~~-ld~a~i-~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~~~~~g 246 (462)
..+..+. +....+ +.-.+.......+ +.+ ||||++++++++++..++||++|+|+.|+++.|+ ++.|++..
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~ 320 (498)
T COG3104 247 NQNTFSGVLLVISILIAIIYFAEAFRSP-----KVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF 320 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC-----ccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc
Confidence 0000000 000000 0000000001111 334 8999999999999999999999999999999999 56788766
Q ss_pred CCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 012514 247 NGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTK 326 (462)
Q Consensus 247 ~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~ 326 (462)
|+++|++|+|++||++|++++|+++++|+|+.++. ++ ++++.|+++|+++++++|+++.........
T Consensus 321 -g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~~~-------- 387 (498)
T COG3104 321 -GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWFGG-------- 387 (498)
T ss_pred -ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhhcC--------
Confidence 89999999999999999999999999999988775 33 489999999999999999999887543211
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccC
Q 012514 327 GSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGK 406 (462)
Q Consensus 327 ~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~ 406 (462)
+.+.+|++|++++|+++++||+|++|+|+|++++++|++++|++||+|+++.++|+.+++.+.+.... + . +
T Consensus 388 ~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~-~-------~ 458 (498)
T COG3104 388 PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T-D-------P 458 (498)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c-c-------h
Confidence 13579999999999999999999999999999999999999999999999999999999887662110 0 0 0
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 012514 407 DMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKN 442 (462)
Q Consensus 407 ~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~ 442 (462)
..+....-.+|+.++..+++..++...++++.+|..
T Consensus 459 ~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~ 494 (498)
T COG3104 459 AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMM 494 (498)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 111223457899999999999999999999887753
No 3
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=1.2e-42 Score=371.04 Aligned_cols=358 Identities=23% Similarity=0.439 Sum_probs=297.2
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-------ch
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV-------SW 95 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~-------g~ 95 (462)
+...++++|+++++|+|++|||++++++|||++++++ +++++|+||||++|+|+++++.+++++++++ ||
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~---~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS---LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 3456889999999999999999999999999875542 3579999999999999999999999998554 69
Q ss_pred hhHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccch
Q 012514 96 GAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLE 175 (462)
Q Consensus 96 ~~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 175 (462)
+++|++++++|++++++|+.++++|++.+|.++++..+.+++..+++++..... . + ...+
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~-~------------------~-~~~~ 220 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRS-E------------------H-WPLH 220 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCC-c------------------c-cchh
Confidence 999999999999999999999999988888888888888888888766422110 0 0 1135
Q ss_pred hhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccc
Q 012514 176 FLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPAS 255 (462)
Q Consensus 176 ~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~ 255 (462)
|+|++... ...+++||+|++++++++++..++||..|+|+.+++++|+.+||++++ |+.+|+++
T Consensus 221 ~ld~a~~~---------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~ 284 (654)
T TIGR00926 221 WLDYAKDK---------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQ 284 (654)
T ss_pred HHHHhccc---------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHH
Confidence 67766321 124579999999999999999999999999999999999999998888 99999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhc---------------
Q 012514 256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVV--------------- 320 (462)
Q Consensus 256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~--------------- 320 (462)
++++|+++++++.|++++.++|.++|++. ++++++|+++|++++++++++++++|..+++..
T Consensus 285 lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~ 361 (654)
T TIGR00926 285 MQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVLN 361 (654)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEec
Confidence 99999999999999999999999888654 358999999999999999999998885432100
Q ss_pred ----------------------------------------c--------------------------c------------
Q 012514 321 ----------------------------------------E--------------------------E------------ 322 (462)
Q Consensus 321 ----------------------------------------~--------------------------~------------ 322 (462)
. +
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (654)
T TIGR00926 362 TDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYVL 441 (654)
T ss_pred CCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEEE
Confidence 0 0
Q ss_pred ------------------------------------C-------------------------------------------
Q 012514 323 ------------------------------------N------------------------------------------- 323 (462)
Q Consensus 323 ------------------------------------~------------------------------------------- 323 (462)
+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (654)
T TIGR00926 442 LLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDNA 521 (654)
T ss_pred EEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeeccccccc
Confidence 0
Q ss_pred ------------C-C---------------------CCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhH
Q 012514 324 ------------P-T---------------------KGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSL 369 (462)
Q Consensus 324 ------------g-~---------------------~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~ 369 (462)
| . ++.+++|++||+|||++.++||++.+++++|+.+++||++||+.
T Consensus 522 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~ 601 (654)
T TIGR00926 522 KSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSV 601 (654)
T ss_pred ccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHH
Confidence 0 0 01335889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012514 370 GIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRY 438 (462)
Q Consensus 370 ~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~ 438 (462)
.+++|.++.++|+.+...+.. ++... +....|.+++.++++..++|..+++.|
T Consensus 602 ~~a~~~~~~~~g~~~~~~~~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 602 LQALWLLTVAIGNLIVVVIAE-FENFS---------------VQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhcCh---------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999865543 22111 224458889999999999999999776
No 4
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=1.1e-41 Score=352.74 Aligned_cols=379 Identities=13% Similarity=0.130 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Q 012514 25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITI 104 (462)
Q Consensus 25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i 104 (462)
..+++++.++++|+|+++||.+++++|+|+++|++ ++++|+++|+++|+|++++|.+++++.+++||+++|+++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 44677888899999999999999999999887653 36899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccceeecCC-CCCCch--hHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchh-hhHh
Q 012514 105 VMAVSLLIFIIGRPFYRYRVP-KGSPLT--PMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEF-LDKA 180 (462)
Q Consensus 105 ~~~~~~iifl~~~~~~~~~~p-~~~~~~--~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-ld~a 180 (462)
+|++++++++.+++.+.+..+ +.+|.+ +....+...+.-.....+ .+... .+ ....... +-.+
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~-~~~~~~~~~~~~ 243 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATP----ALITV--------LF-WKEWSVYALIVA 243 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHH----HHHHH--------HH-HHHHHHHHHHHH
Confidence 999999999988887654311 112221 100000000000000000 00000 00 0000000 0000
Q ss_pred hhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHH-HHhccCCCCCeeeCccccchh
Q 012514 181 AILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA-ATMNREIGNGFLIPPASVFGL 259 (462)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~~~~~g~g~~ip~~~~~~~ 259 (462)
.+....++..... +..+.||||++..++++++..++||+.|+|+.+++++++ +++|++++ |+++|++|+|++
T Consensus 244 ~~~~~~~~~~~~~------~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qsl 316 (493)
T PRK15462 244 TIIGLGVLAKIYR------KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSI 316 (493)
T ss_pred HHHHHHHHHHHHH------hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhH
Confidence 0000000000000 112467899999999999999999999999999999999 68999999 999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHH
Q 012514 260 TAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQ 339 (462)
Q Consensus 260 n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~ 339 (462)
||++|+++.|++.++|.++.+|. ++ ++.+.|+++|+++.++||+++.+.... ..++ ..+|++|++..
T Consensus 317 Np~~ii~l~P~~a~lw~~l~~~~-~~---~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~-----~~~s~~wl~~~ 383 (493)
T PRK15462 317 NAFAVMLCGVFLAWVVKESVAGN-RT---VRIWGKFALGLGLMSAGFCILTLSARW----SAMY-----GHSSLPLMVLG 383 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-CC---CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCC-----CCcCHHHHHHH
Confidence 99999999999999998775432 23 489999999999999999999876542 1212 25899999999
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHH-hHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHH
Q 012514 340 SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVI-GAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW 418 (462)
Q Consensus 340 ~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~-~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~ 418 (462)
|+++|+||++.+|.++++++++||++++|++||+|++.. ++|+.+++.+.+.+...+ .++ -...+-+..++..+|.
T Consensus 384 ~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~-~~~--~~~~~~~~~~~~~~f~ 460 (493)
T PRK15462 384 LAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQAS-FDA--SGAINYSINAYIEVFD 460 (493)
T ss_pred HHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCc--cccccchhhhHHHHHH
Confidence 999999999999999999999999999999999999965 899999999988664211 000 0000001113456777
Q ss_pred HHHHHHHHH-H-HHHHhhhhccccccc
Q 012514 419 LLAALVAAN-L-FVYVVVARRYSYKNV 443 (462)
Q Consensus 419 ~la~l~~~~-~-v~~~~~~~~~~~~~~ 443 (462)
.++..+++. + +.+..+-+.+|.|+|
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
T PRK15462 461 QITWGALACVGVVLMIWLYQALKFRNR 487 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 777766655 3 333333344444433
No 5
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=2.4e-43 Score=357.57 Aligned_cols=340 Identities=33% Similarity=0.512 Sum_probs=236.1
Q ss_pred CCcchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhH
Q 012514 19 PRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAA 98 (462)
Q Consensus 19 ~~~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~ 98 (462)
+++.+.+.+++||.++++|+|++|||++++++|||++++++ +++++|+||||++|+|++++..+++++++++||+++
T Consensus 28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~ 104 (372)
T PF00854_consen 28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG 104 (372)
T ss_dssp ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence 44566899999999999999999999999999999987532 347999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcccceeec-CCCCCCchh-HHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchh
Q 012514 99 DVIITIVMAVSLLIFIIGRPFYRYR-VPKGSPLTP-MLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEF 176 (462)
Q Consensus 99 F~i~~i~~~~~~iifl~~~~~~~~~-~p~~~~~~~-~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 176 (462)
|++++++|++++++|+.++++|++. +|.++++.. ...++..+.+++....|.....+....+. ...... ......
T Consensus 105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~ 181 (372)
T PF00854_consen 105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSWLDWALFQ-YSERSI--FGIIVF 181 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHHHHHHHHH-HCCCCC--CCCCCH
T ss_pred hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHHHHHhhhh-hhhhhh--hhhhhh
Confidence 9999999999999999999999887 677888877 44555555555443322110001110000 000000 000001
Q ss_pred hhHhhhhcCCCCCCCCCCCcc-cccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCC-eeeCcc
Q 012514 177 LDKAAILEDYETPVDQQSPWR-IANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNG-FLIPPA 254 (462)
Q Consensus 177 ld~a~i~~~~~~~~~~~~~~~-~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g-~~ip~~ 254 (462)
.+.+.+ ...+ ...|+ .++++++|+.|.+.+.++.+...++|+..+.|..+....|..++|+.++ + +++|++
T Consensus 182 ~~~~~~-~~~~-----~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~ 254 (372)
T PF00854_consen 182 IRAAVI-FFPE-----IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPA 254 (372)
T ss_dssp HHHHHH-HCCC-----HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SG
T ss_pred ccchhh-hhhh-----hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccc
Confidence 111111 1110 00111 1456788999999999999999999999999988888888888988888 7 999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+++++|+++++++.|+++++++|++++ ++ +.+++.|+++|++++.+++++.+.+|..|.....+++ ..+.+
T Consensus 255 ~l~~~n~i~iii~~pi~~~~~~p~~~~-~~---~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~-----~~~~~ 325 (372)
T PF00854_consen 255 WLQSFNPIFIIIFIPILDRVVYPLLRR-GI---QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG-----KVSPW 325 (372)
T ss_dssp GGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T-----T--TH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHhhh-cc---cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-----CCChh
Confidence 999999999999999999999999883 33 3589999999999999999999999987766555433 56779
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhH
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGA 380 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~ 380 (462)
|++|.|++++++|+++++++++.+++.+|+++++.|+|+|+...++
T Consensus 326 ~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 326 WQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF 371 (372)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999887654
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=3.2e-38 Score=330.28 Aligned_cols=373 Identities=13% Similarity=0.133 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Q 012514 25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITI 104 (462)
Q Consensus 25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i 104 (462)
..++++++++++|+|++|||..++++|+|+++++| ++++|+++|+++|+|+++||.++|++.+++||+++|+++++
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 34668999999999999999999999999877642 35789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccceeec--CCCCCCch--hHHH------HHHHHHHhCCCCCCCCCCccccccccccccccccccccc
Q 012514 105 VMAVSLLIFIIGRPFYRYR--VPKGSPLT--PMLQ------VLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL 174 (462)
Q Consensus 105 ~~~~~~iifl~~~~~~~~~--~p~~~~~~--~~~~------vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 174 (462)
+++++++.+..+++.+++. +|++++.. .... .+...+..... ... . ..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~----~~~-~--------------~~--- 239 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMH----NVE-V--------------AN--- 239 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHh----hhh-H--------------HH---
Confidence 9999998888888777553 23333321 1110 00111100000 000 0 00
Q ss_pred hhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHH-HhccCCCCCeeeCc
Q 012514 175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAA-TMNREIGNGFLIPP 253 (462)
Q Consensus 175 ~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~~~~~g~g~~ip~ 253 (462)
..+..+.++....+ -++.. ..+.+++++.+..+++++..++||..|+|+.+++++|+. ++|+++. |+++|+
T Consensus 240 ~~~~~~~~i~~~~f------~~~~~-~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~ 311 (489)
T PRK10207 240 LVLIVLSIVVTIIF------FREAF-KLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINP 311 (489)
T ss_pred HHHHHHHHHHHHHH------HHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECH
Confidence 00000000000000 00000 112346777788888899999999999999999999885 6887777 999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++|++|+++++++.|+.++++.++.+| +. ++++++|+++|+++.++|++++++.+... ...+ ..+|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r-~~---~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~-----~~~s~ 379 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSK-GK---DLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ-----GLTSP 379 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhC-CC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCC-----CccCH
Confidence 9999999999999999999877665443 33 35899999999999999998876554311 1111 24789
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL 413 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l 413 (462)
||+++.|++.|+||++.+|++++++++.+|++++|.+||+|+++.++|+.+|+.+.+.+.... . ..-+.. ..+.+
T Consensus 380 ~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~-~---~~~~~~-~~~~~ 454 (489)
T PRK10207 380 WFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPD-N---ITDPLE-TLPVY 454 (489)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c---cccchh-hhhhH
Confidence 999999999999999999999999999999999999999999999999999999887654211 0 000100 01235
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 012514 414 DKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVA 448 (462)
Q Consensus 414 ~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~~~ 448 (462)
..+|..+++.+++.+++++++.|+++|..+++|.|
T Consensus 455 ~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 489 (489)
T PRK10207 455 TNVFGKIGLVTLGVAVVMALMVPWLNRMINTPESH 489 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 78899999999999999999999999987777654
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=6.5e-37 Score=319.87 Aligned_cols=361 Identities=14% Similarity=0.127 Sum_probs=268.8
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT 103 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~ 103 (462)
.+.+++++.++++|.|+++|+..++++|++++++++ + ++++|+++|+++|+|+++|+.+++++.+++||+++|.+++
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~-~--r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~ 178 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP-R--RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA 178 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc-c--ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 567888999999999999999999999999876532 1 3679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcccceeecCCCCCCchhH-----H--HH----HHHHHHhCCCCCCCCCCccccccccccccccccccc
Q 012514 104 IVMAVSLLIFIIGRPFYRYRVPKGSPLTPM-----L--QV----LVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTK 172 (462)
Q Consensus 104 i~~~~~~iifl~~~~~~~~~~p~~~~~~~~-----~--~v----l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 172 (462)
+.+++++++++..++.+++.++++++.+.. . .. +....+... ...+. +. . + .
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~-------~----~-~ 241 (475)
T TIGR00924 179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAW-LMHHV----VI-------A----N-I 241 (475)
T ss_pred HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHH-HHhcc----HH-------H----H-H
Confidence 999999888888888776544333322110 0 00 000111000 00000 00 0 0 0
Q ss_pred cchhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHH-HHhccCCCCCeee
Q 012514 173 NLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA-ATMNREIGNGFLI 251 (462)
Q Consensus 173 ~~~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~~~~~g~g~~i 251 (462)
.......+..+.... ....| ..+.+|+++..+++++++..++||++|+|+.++++++. +++|++++ ++++
T Consensus 242 ~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~i 312 (475)
T TIGR00924 242 LLMTVTLAVIIFFFR---LAFKP-----RLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSV 312 (475)
T ss_pred HHHHHHHHHHHHHHH---HHHhc-----cCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEE
Confidence 000000011100000 00011 11234555667789999999999999999999998876 67998888 9999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 012514 252 PPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSM 331 (462)
Q Consensus 252 p~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 331 (462)
|+++++++|++++++++|+++++|.++.+| +++ .++..|+++|+++.++|++.+++... ..++ ..++
T Consensus 313 p~~~~~~~n~~~iil~~p~~~~~~~~l~~~-~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~-----~~~~ 379 (475)
T TIGR00924 313 PVIWFQSLNPFWVVVGSPVLAMIWTRLGRK-GKD---PTTPLKFTLGMLFCGASFLTFAASIW----FADA-----GGLT 379 (475)
T ss_pred CHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCC---CCcHHHHHHHHHHHHHHHHHHHHHHh----hcCC-----CCcc
Confidence 999999999999999999999877666544 332 37888999999999999999987632 1222 2368
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccc
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSS 411 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~ 411 (462)
|+||++++|+++|+||++++|++++++++++|+++||.++|+|.++.++|+.+++.+.+..... .
T Consensus 380 s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~------------~--- 444 (475)
T TIGR00924 380 SPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP------------Q--- 444 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------c---
Confidence 9999999999999999999999999999999999999999999999999999999887743210 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514 412 RLDKFYWLLAALVAANLFVYVVVARRYSYK 441 (462)
Q Consensus 412 ~l~~~f~~la~l~~~~~v~~~~~~~~~~~~ 441 (462)
....+|..+++++++.+++++++.|+++|.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 474 (475)
T TIGR00924 445 GVTGVFGKIGLVTLLVGVVMALMVPWLNRM 474 (475)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 134578889999999999999999988874
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=3e-36 Score=316.70 Aligned_cols=368 Identities=13% Similarity=0.181 Sum_probs=271.1
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT 103 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~ 103 (462)
.+.+++++.++++|.|+++|+..++++|+|++++++ ++++++++|+++|+|+++||.+++++.+++||+++|.+++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 456778889999999999999999999999876532 2568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcccceeec--CCCCCCchh--H----HHHHHHH-HHhCCCCCCCCCCccccccccccccccccccccc
Q 012514 104 IVMAVSLLIFIIGRPFYRYR--VPKGSPLTP--M----LQVLVAA-IAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL 174 (462)
Q Consensus 104 i~~~~~~iifl~~~~~~~~~--~p~~~~~~~--~----~~vl~~a-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 174 (462)
+.++++++.++..++.+++. +|++++... . ..+.... ........+ + .. + ..
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~-------------~--~~ 248 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ---E-IA-------------R--MA 248 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcc---h-HH-------------H--HH
Confidence 99999998887777666543 233333221 1 1111111 000000000 0 00 0 00
Q ss_pred hhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHH-HHhccCCCCCeeeCc
Q 012514 175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQA-ATMNREIGNGFLIPP 253 (462)
Q Consensus 175 ~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~~~~~g~g~~ip~ 253 (462)
............ ....+ +.+.+|+++.+..+++++..++||++|.|+.+.+..|+ .++|+++. |+.+|+
T Consensus 249 ~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~ 318 (500)
T PRK09584 249 LGVVALGIVVIF--------GKEAF-AMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEP 318 (500)
T ss_pred HHHHHHHHHHHH--------HHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECH
Confidence 000000000000 00000 12345677777888899999999999999999999998 45787777 999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++++++|++.+++++|+.++++.++.+| +++.+|+++|+++.++|++++++.... ..++ ..+|.
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~~-----~~vs~ 382 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAKF----ANDA-----GIVSV 382 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCC-----CccCH
Confidence 9999999999999999999987655333 368899999999999999998876532 2222 36899
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCc-cch
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMN-SSR 412 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n-~~~ 412 (462)
+|++++|+++|+||++++|.+++++++++|+++||++||+|+++.++|+.+++.+.+.+.. +. -..+... .+.
T Consensus 383 ~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~-~~-----~~~~~~~~~~~ 456 (500)
T PRK09584 383 NWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAV-PD-----NVTDPLMSLEV 456 (500)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-----ccccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999998875431 00 0001111 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012514 413 LDKFYWLLAALVAANLFVYVVVARRYSYKNVQRS 446 (462)
Q Consensus 413 l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~ 446 (462)
+..+|..+++++++.++++++++++++|..+.+.
T Consensus 457 ~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~ 490 (500)
T PRK09584 457 YGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDS 490 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5678888999999899999999999998755544
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.44 E-value=4.3e-11 Score=123.08 Aligned_cols=298 Identities=9% Similarity=-0.058 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.+++..++.+++.|...+...+.+.|.+++++ +.++.+++++..++|..+|+.+++++.+..+|++.|.+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 35666777778888888888888888888876432 256788999999999999999999998888999999988
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI 182 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i 182 (462)
++..+++.+.....++ .+|+... +. + . .....+..
T Consensus 183 ~~~~~~~~~~~~~l~~----~~~~~~~--------------~~-----~-------------------~-~~~~~~~~-- 217 (417)
T PRK10489 183 AAGTFITLLPLLRLPA----LPPPPQP--------------RE-----H-------------------P-LRSLLAGF-- 217 (417)
T ss_pred HHHHHHHHHHHHhCCC----CCCCCcc--------------cc-----c-------------------c-hHHHHHHH--
Confidence 7777666554332211 1111000 00 0 0 00000000
Q ss_pred hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCc---cccchh
Q 012514 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPP---ASVFGL 259 (462)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~---~~~~~~ 259 (462)
+ .+-..+.+ +.+ ++.... +.......+.+.... ....+ .++ +++...
T Consensus 218 --------------~-----~~~~~~~~-~~~--~~~~~~-~~~~~~~~~~~p~~~---~~~~g----~~~~~~g~~~~~ 267 (417)
T PRK10489 218 --------------R-----FLLASPVV-GGI--ALLGGL-LTMASAVRVLYPALA---DEVWQ----MGAAQIGLLYAA 267 (417)
T ss_pred --------------H-----HHHcChHH-HHH--HHHHHH-HHHHHhHHHhhHHHH---HhccC----CChhHhHHHHHH
Confidence 0 00000111 111 111111 111111111111111 11112 222 234444
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHH
Q 012514 260 TAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQ 339 (462)
Q Consensus 260 n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~ 339 (462)
..+..++...+..++- +| . ++.+.+.++.++.+++++..+.. .+.+..+..
T Consensus 268 ~~~g~~ig~~~~~~l~----~~-~------~~~~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 318 (417)
T PRK10489 268 VPLGAALGALTSGWLA----HS-A------RPGLLMLLSTLGSFLAVGLFGLM------------------PMWILAVLC 318 (417)
T ss_pred HHHHHHHHHHHHHHhh----hc-c------CcchHHHHHHHHHHHHHHHHHcc------------------chHHHHHHH
Confidence 4455555544444321 22 1 22334556666666666544321 123334446
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHH
Q 012514 340 SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWL 419 (462)
Q Consensus 340 ~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~ 419 (462)
.++.+++.....+....++.+..|++.||..+|++.....+|..+|+.+.+.+.. ..+. ...++.
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~------------~~g~---~~~~~~ 383 (417)
T PRK10489 319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA------------MMTP---VASASA 383 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH------------Hhch---hhHHHH
Confidence 6778899888888888999999999999999999998888888888888764431 1221 223455
Q ss_pred HHHHHHHHHHHHHhhhhccccccccc
Q 012514 420 LAALVAANLFVYVVVARRYSYKNVQR 445 (462)
Q Consensus 420 la~l~~~~~v~~~~~~~~~~~~~~~~ 445 (462)
.+++.++..++.....+++++++.|+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 384 SGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred HHHHHHHHHHHHHHhccccccccccc
Confidence 55555555555555556666554443
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.36 E-value=1e-10 Score=119.84 Aligned_cols=260 Identities=10% Similarity=0.053 Sum_probs=155.1
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.+++.|.+.|...+.+.|.+++++ +.+++++.+...++|..+|+.+++++. +++|++.|++.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 46778888889999999999999999998876432 367899999999999999999999998 68999999988
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI 182 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i 182 (462)
++..++..++.....+.. ++ ++. + + + . . ..+.. +
T Consensus 171 ~~~~~~~~i~~~~~~~~~---~~--~~~----------------~---~-~-~--------------~---~~~~~---~ 204 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAY---KL--STV----------------R---T-P-V--------------R---EGMTR---V 204 (400)
T ss_pred HHHHHHHHHHHHHhCCcc---cc--ccc----------------c---h-h-h--------------H---HHHHH---H
Confidence 777666554433221110 00 000 0 0 0 0 0 00000 0
Q ss_pred hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV 262 (462)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l 262 (462)
..++ ++. .+.+....++..+.|....+.... .. .+ +.....+++.+++.+
T Consensus 205 ---------------------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~p~~~---~~-~~-~~~~~~g~l~~~~~~ 254 (400)
T PRK11646 205 ---------------------LRDK-RFV---TYVLTLTGYYMLAVQVMLMLPIMV---ND-IA-GSPSAVKWMYAIEAC 254 (400)
T ss_pred ---------------------HcCc-hHH---HHHHHHHHHHHHHHHHHHhhhhhH---Hh-hc-CCchHHHHHHHHHHH
Confidence 0011 111 111112223333333221121111 11 11 110111234444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHH
Q 012514 263 GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSII 342 (462)
Q Consensus 263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l 342 (462)
..+.+.....++. .|+. +..+++..|.++.+++++..+..+ +.++.+...++
T Consensus 255 ~~~~~~~~~~~~~----~~r~------~~~~~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~l 306 (400)
T PRK11646 255 LSLTLLYPIARWS----EKRF------RLEHRLMAGLLIMSLSMFPIGMVS------------------NLQQLFTLICL 306 (400)
T ss_pred HHHHHHHHHHHHH----HHhc------chhHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHHHH
Confidence 4443333333322 2211 233456777777777766554321 22334445577
Q ss_pred HHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514 343 SGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD 393 (462)
Q Consensus 343 ~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~ 393 (462)
.++|+.+..|.....+.+.+|++.||..+|++.+..++|..+|+.+.+.+.
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~ 357 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLF 357 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHH
Confidence 899999999999999999999999999999999999999999888777543
No 11
>PRK03545 putative arabinose transporter; Provisional
Probab=99.30 E-value=1.5e-09 Score=110.59 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++.++++++.|.+-|...+++.|.+++++ +.++++++..+.++|..+++.+++.+.+++||++.|.+.
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 169 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI 169 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence 47778888889999999999999999999987532 257899999999999999999999998889999999998
Q ss_pred HHHHHHHHHH
Q 012514 103 TIVMAVSLLI 112 (462)
Q Consensus 103 ~i~~~~~~ii 112 (462)
++..++..+.
T Consensus 170 ~~~~~l~~~~ 179 (390)
T PRK03545 170 GGGALITLLL 179 (390)
T ss_pred HHHHHHHHHH
Confidence 7766655543
No 12
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.30 E-value=3.4e-09 Score=108.53 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.+++.+...+...+...|.+++++ +.+..++.+...++|..++|.+++++.++.+|++.|.+.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 46677888888999999988989999999886532 245677888888899999999999998889999999987
Q ss_pred HHHHHHHHHHH
Q 012514 103 TIVMAVSLLIF 113 (462)
Q Consensus 103 ~i~~~~~~iif 113 (462)
++..+++.+..
T Consensus 174 ~~~~~~~~~~~ 184 (406)
T PRK15402 174 AALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHH
Confidence 77777665543
No 13
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.23 E-value=4.1e-09 Score=107.21 Aligned_cols=277 Identities=14% Similarity=0.144 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.+.+.+..-|...++..+ + .+ ++.+.++......++|..+++.+++++.+++||+..|.+.
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~----~~---~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT-W----QK---QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH-H----HH---HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 46777788888888888888888887643 2 11 1256799999999999999999999999999999999886
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI 182 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i 182 (462)
++...+.++.+ ..++.. +|+++. . + .+ ......+.+ +
T Consensus 165 ~~~~~~~~~~~-~~~~~~---~~~~~~---------------~-----~------~~----------~~~~~~~~~---~ 201 (382)
T TIGR00902 165 TAGLAFMLIGF-LIKPTI---PPKDAI---------------P-----E------DE----------SQGDSAFIA---L 201 (382)
T ss_pred HHHHHHHHHHH-HcCCCC---CCCccc---------------c-----c------cc----------cccchhHHH---H
Confidence 55433332222 211110 111000 0 0 00 000000000 0
Q ss_pred hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCc---cccchh
Q 012514 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPP---ASVFGL 259 (462)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~---~~~~~~ 259 (462)
..+ |+ +..+.+...+++..+.+..+....+... .| .++ +.+..+
T Consensus 202 ---------------------l~~-~~---~~~~l~~~~l~~~~~~~~~~~~~~~l~~----~g----~s~~~~g~l~~~ 248 (382)
T TIGR00902 202 ---------------------LKN-PM---NLRFLAAVCLIQGAHAAYYGFSAIYWQA----AG----ISASATGLLWGI 248 (382)
T ss_pred ---------------------HcC-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----CC----CCHhHHHHHHHH
Confidence 001 12 2233333444455555555544333222 23 233 234445
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHH
Q 012514 260 TAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQ 339 (462)
Q Consensus 260 n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~ 339 (462)
+.+..++..++.+++ .+|+ ++.+-+.+|.++.++.++..++.+ +.++++..
T Consensus 249 ~~~~~i~~~~~~~~l----~~r~-------g~~~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 299 (382)
T TIGR00902 249 GVLAEIIIFAFSNKL----FQNC-------SARDLLLISAIACVGRWAIIGAIE------------------AFPLIFLL 299 (382)
T ss_pred HHHHHHHHHHHhHHH----HhhC-------CHHHHHHHHHHHHHHHHHHHHhHh------------------hHHHHHHH
Confidence 555555555554443 3442 344556788888888877665432 34445555
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHH-HHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHH
Q 012514 340 SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYL-SVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW 418 (462)
Q Consensus 340 ~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~-l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~ 418 (462)
-+++++.+.+..+....++.+. |++.++.++|++. +..++|..+|+.+.+.+. |..+ ...|+
T Consensus 300 q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~------------~~~g----~~~~~ 362 (382)
T TIGR00902 300 QILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY------------PTLG----AGTFV 362 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------Hhcc----HHHHH
Confidence 5999999999999999999998 9999999999986 567888888877766432 2232 23467
Q ss_pred HHHHHHHHHHH
Q 012514 419 LLAALVAANLF 429 (462)
Q Consensus 419 ~la~l~~~~~v 429 (462)
..++++++.++
T Consensus 363 ~~~~~~~~~~~ 373 (382)
T TIGR00902 363 FMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHH
Confidence 77777765543
No 14
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.23 E-value=6.6e-09 Score=104.37 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.++|.|...|...+++.|.+++++ +.++++++....++|.++++.+++++.++.+|++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 57888899999999999999999999999986422 267899999999999999999999988889999999987
Q ss_pred HHHHHHHHHHHH
Q 012514 103 TIVMAVSLLIFI 114 (462)
Q Consensus 103 ~i~~~~~~iifl 114 (462)
++..++..+...
T Consensus 155 ~~~~~~~~~~~~ 166 (399)
T TIGR00893 155 GVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHhh
Confidence 776666555433
No 15
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.23 E-value=3e-09 Score=106.16 Aligned_cols=264 Identities=12% Similarity=0.048 Sum_probs=156.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.+++.|...|...+++.|.+++++ +.++++++..+.++|.++|+.+++++.+..||++.|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 57888899999999999999999999999986532 257899999999999999999999998889999999988
Q ss_pred HHHHHHHHHHHHHcccceeecCC-CCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVP-KGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAA 181 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p-~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~ 181 (462)
++..+++.+.....+.. ++++ +.++.. +.......+.
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------------------------------------~~~~~~~~~~-- 202 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP--ELAASEIQALS--------------------------------------NAVLRDTREG-- 202 (365)
T ss_pred HHHHHHHHHHHHhcccc--cCCCccccccc--------------------------------------hhHHHHHHhH--
Confidence 77766665543332111 0000 000000 0000000000
Q ss_pred hhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchh-HHHHHHHHHhccCCCCCeeeCc---cccc
Q 012514 182 ILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQST-TFFIKQAATMNREIGNGFLIPP---ASVF 257 (462)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~-s~~~~qa~~~~~~~g~g~~ip~---~~~~ 257 (462)
..+.++-..+..+.+...+++..+.... ..+....... .+ .++ +.+.
T Consensus 203 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~ 253 (365)
T TIGR00900 203 ----------------------IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY---LG----RGSTHYGWVL 253 (365)
T ss_pred ----------------------HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hC----CchHHHHHHH
Confidence 0000000011122222222232222111 1111111110 11 222 2334
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHH
Q 012514 258 GLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLA 337 (462)
Q Consensus 258 ~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli 337 (462)
....+..++..++..++ .+|. ...+-+.++.++.+++++...... + +.++.+
T Consensus 254 ~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~~~~~ 305 (365)
T TIGR00900 254 AAFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLAILVVGLTP----------------P-NFPLFL 305 (365)
T ss_pred HHHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHHHHHHHhhc----------------h-hHHHHH
Confidence 44444445555554432 2232 122234455556666555544321 1 244555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 338 PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 338 ~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
...++.+++.....+.....+.+..|++.||..+|++.....+|..+++.+.+.
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~ 359 (365)
T TIGR00900 306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP 359 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999998877663
No 16
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.22 E-value=1.8e-09 Score=110.27 Aligned_cols=293 Identities=14% Similarity=0.145 Sum_probs=160.5
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++.++.+++.+. -|...+...|++++++ +.++.+++..+.++|.++++.+.+++.+..+|+..|.+.
T Consensus 106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 467778888888888664 5777788888875322 257788999999999999999999998888999999988
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI 182 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i 182 (462)
++..+++.+......+.-. +|..++. . .+..+....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~--~~~~~~~--------------------~----------------------~~~~~~~~~ 214 (408)
T PRK09874 179 ASVLFLCFLVTLFCIRENF--QPVSKKE--------------------M----------------------LHMREVVTS 214 (408)
T ss_pred HHHHHHHHHHHHHHhccCc--ccccchh--------------------h----------------------hHHHHHHHh
Confidence 7777666554332211100 0100000 0 000000000
Q ss_pred hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV 262 (462)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l 262 (462)
.. +.+.. +.++.....+........+.+..+......+.. ....-...+..+..+
T Consensus 215 ---------~~------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l 269 (408)
T PRK09874 215 ---------LK------------NPKLV---LSLFVTTLIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVPGV 269 (408)
T ss_pred ---------Cc------------CCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHH
Confidence 00 00011 111111122222222222222222211111000 000001112223334
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHH
Q 012514 263 GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSII 342 (462)
Q Consensus 263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l 342 (462)
..++..|+..++. +|. ...+-+.++.++.+++++..... .+.++.....++
T Consensus 270 ~~~~~~~~~g~l~----dr~-------g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 320 (408)
T PRK09874 270 AALLSAPRLGKLG----DRI-------GPEKILITALIFSVLLLIPMSFV------------------QTPLQLGILRFL 320 (408)
T ss_pred HHHHHHHHHHHHH----hcc-------ccchhHHHHHHHHHHHHHHHHHh------------------ccHHHHHHHHHH
Confidence 4445555554433 332 22233445555555555443321 123344445678
Q ss_pred HHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHH
Q 012514 343 SGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAA 422 (462)
Q Consensus 343 ~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~ 422 (462)
.++++....|.....+.+.+|++.+|..+|++.....+|..+|+.+.+.+. ++.+ ....|+..++
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~------------~~~g---~~~~f~~~~~ 385 (408)
T PRK09874 321 LGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS------------ANYG---FRAVFLVTAG 385 (408)
T ss_pred HHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH------------hhcc---hhHHHHHHHH
Confidence 899999999999999999999999999999998888888888888776432 1111 2345677777
Q ss_pred HHHHHHHHHHhhh
Q 012514 423 LVAANLFVYVVVA 435 (462)
Q Consensus 423 l~~~~~v~~~~~~ 435 (462)
++++..++.+...
T Consensus 386 ~~l~~~~~~~~~~ 398 (408)
T PRK09874 386 VVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666554443
No 17
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.21 E-value=1.2e-08 Score=104.09 Aligned_cols=278 Identities=15% Similarity=0.167 Sum_probs=158.1
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT 103 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~ 103 (462)
...++++..+.++|.|...++..+...|.+++++ +.++++++..+.++|..+|+.+++++.+..||+..|.+.+
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 185 (399)
T PRK05122 112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM 185 (399)
T ss_pred HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4567788889999999999999999999886543 2567889999999999999999999988899998887765
Q ss_pred HHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhhh
Q 012514 104 IVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAIL 183 (462)
Q Consensus 104 i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i~ 183 (462)
+..++..+ ..++ .++.+++++ + .. .+
T Consensus 186 ~~~~~~~~---~~~~-~~~~~~~~~----------------------~------------------~~---~~------- 211 (399)
T PRK05122 186 LLALLGLL---LARP-RPAVPPVKG----------------------E------------------RL---PF------- 211 (399)
T ss_pred HHHHHHHH---HHhc-CCCCCCCCc----------------------c------------------ch---hH-------
Confidence 54333222 2111 111000000 0 00 00
Q ss_pred cCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHHH
Q 012514 184 EDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAVG 263 (462)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l~ 263 (462)
.+..|+.......+ .++...+....+....+.. +. + +. ..........+.
T Consensus 212 --------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~--~--~~-~~~~~~~~~~~~ 261 (399)
T PRK05122 212 --------------------RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYA--AR--G--WD-GAALALTLFGVA 261 (399)
T ss_pred --------------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--Hc--c--cc-cchHHHHHHHHH
Confidence 00111111111111 1111111111111111111 11 1 10 112223333444
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHH
Q 012514 264 MIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIIS 343 (462)
Q Consensus 264 iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~ 343 (462)
.++..++..++. +|. ++.+.+.++.++.+++++..... .+.++++...++.
T Consensus 262 ~~~~~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~ 312 (399)
T PRK05122 262 FVGARLLFGNLI----NRL-------GGLRVAIVSLLVEILGLLLLWLA------------------PSPWMALIGAALT 312 (399)
T ss_pred HHHHHHHHHHHH----HHh-------ccHHHHHHHHHHHHHHHHHHHHh------------------ccHHHHHHHHHHH
Confidence 444444444432 332 22334556667777766555432 1234455567889
Q ss_pred HHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHH
Q 012514 344 GVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAAL 423 (462)
Q Consensus 344 ~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l 423 (462)
+++.....|.....+.+..|++.||..+|++.....+|..+++.+.+.+. +..+ ....|+..+++
T Consensus 313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~------------~~~g---~~~~~~~~~~~ 377 (399)
T PRK05122 313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA------------SWFG---YPSIFLAAALA 377 (399)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHcC---HHHHHHHHHHH
Confidence 99999989888888889999999999999999998888888777665332 1111 23445666666
Q ss_pred HHHHHHHHHhhh
Q 012514 424 VAANLFVYVVVA 435 (462)
Q Consensus 424 ~~~~~v~~~~~~ 435 (462)
.++..++.+...
T Consensus 378 ~~~~~~~~~~~~ 389 (399)
T PRK05122 378 ALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHHHhc
Confidence 666555544443
No 18
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.20 E-value=7.6e-09 Score=105.18 Aligned_cols=258 Identities=14% Similarity=0.061 Sum_probs=148.0
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.+++...+.+++.+...|...++..|.. ++ +.+.++......++|..+||.+++++.+++||+..|.+.
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~-~~-------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~ 164 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ-KQ-------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWIL 164 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHH-hh-------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 4677777888889999999998888877652 11 135677788888999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI 182 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i 182 (462)
++..++..+.. ...+ +.+|++++. + . . +....++.+
T Consensus 165 ~~~~~~~~~~~-~~~~---~~~~~~~~~------------~-~-----~------------------~~~~~~~~~---- 200 (382)
T PRK11128 165 TAGVASMLLGQ-LLRP---TIMPQGESR------------Q-Q-----E------------------SAGWPAWKA---- 200 (382)
T ss_pred HHHHHHHHHHH-HccC---CCCCccccc------------c-c-----c------------------ccccchHHH----
Confidence 76555443322 2211 111111000 0 0 0 000000000
Q ss_pred hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV 262 (462)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l 262 (462)
.-..|.+ ..+.+...+++..+.+..+.+..+..+ .| .-+-..+.+..++.+
T Consensus 201 ---------------------i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g-~s~~~~g~~~~~~~~ 251 (382)
T PRK11128 201 ---------------------LLKEPTV---WRFLLCVSLLQGSHAAYYGFSAIYWQA----AG-YSASTIGYLWSLGVV 251 (382)
T ss_pred ---------------------HHcChhH---HHHHHHHHHHHHHhHhHHHHHHHHHHH----CC-CCHhHHHHHHHHHHH
Confidence 0001112 222222333333333333333332221 12 000112345556666
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHH
Q 012514 263 GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSII 342 (462)
Q Consensus 263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l 342 (462)
..++...+.+++. +|+ +..+.+.++.++.+++++..+.. .+.++++...++
T Consensus 252 ~~~~~~~~~g~l~----~r~-------~~~~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l 302 (382)
T PRK11128 252 AEVLIFAFSNRLF----RRW-------SARDLLLLSAICGVVRWGLMGST------------------TALPWLIVIQIL 302 (382)
T ss_pred HHHHHHHHHHHHH----HHC-------CHHHHHHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHHH
Confidence 6565555555543 332 23344667777777776655432 134555667788
Q ss_pred HHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHH-HHHhHHHHHHHHHHhh
Q 012514 343 SGVADGFALVGLQEYFYDQVPDSMRSLGIAFYL-SVIGAANFLSSFLITV 391 (462)
Q Consensus 343 ~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~-l~~~~g~~lg~~l~~~ 391 (462)
.++++.+..+.....+.++. ++.++.++++.. +..++|..+|+.+.+.
T Consensus 303 ~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~ 351 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGF 351 (382)
T ss_pred HHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988875 455688888876 6566776666666553
No 19
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.20 E-value=2.1e-08 Score=102.50 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.+.++..+.+++.|...|...+++.|.+++++ +.+++++++.+.++|.++++.+++++.+..+|+..|.+.
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 46778888899999999999999999999986432 267899999999999999999999998889999999987
Q ss_pred HHHHHHHHHH
Q 012514 103 TIVMAVSLLI 112 (462)
Q Consensus 103 ~i~~~~~~ii 112 (462)
++..++..+.
T Consensus 176 ~~~~~~~~~~ 185 (406)
T PRK11551 176 GVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHH
Confidence 7665555443
No 20
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.19 E-value=8.7e-09 Score=101.90 Aligned_cols=263 Identities=17% Similarity=0.227 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.+++.|...+...++..|.+++++ +...+++.+.+.++|..+++.+.+++.++.+|+..|.+.
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46788889999999999999999999999987633 257899999999999999999999999988999999998
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI 182 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i 182 (462)
++..+++.+.....+ +...
T Consensus 160 ~~~~~~~~~~~~~~~-------------~~~~------------------------------------------------ 178 (352)
T cd06174 160 AILGLLLALLLLFLL-------------RLLL------------------------------------------------ 178 (352)
T ss_pred HHHHHHHHHHHHHHH-------------HHHH------------------------------------------------
Confidence 887777766544321 0000
Q ss_pred hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV 262 (462)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l 262 (462)
.+.+....++..+......+.....+. .+.. ....+.+...+.+
T Consensus 179 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~ 222 (352)
T cd06174 179 --------------------------------LLALAFFLLSFGYYGLLTYLPLYLQEV-LGLS---AAEAGLLLSLFGL 222 (352)
T ss_pred --------------------------------HHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHH
Confidence 000000001111100011111111110 0100 0112345566666
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCccc-hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHH
Q 012514 263 GMIISVTFYEKILVPVLRRATGNERGIQILQ-RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSI 341 (462)
Q Consensus 263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~-ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~ 341 (462)
..++..++..++.++..+ .+ .+.++.++.+++++.....+ +.++.....+
T Consensus 223 ~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~------------------~~~~~~~~~~ 273 (352)
T cd06174 223 GGILGALLGGLLSDRLGR-----------RRLLLLIGLLLAALGLLLLALAP------------------SLALLLVALL 273 (352)
T ss_pred HHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHhc------------------cHHHHHHHHH
Confidence 667777776664433221 22 46677777777777665421 2456667889
Q ss_pred HHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHH
Q 012514 342 ISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLA 421 (462)
Q Consensus 342 l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la 421 (462)
+.++++....+...+.+.+..|++.|+..+|++.....+|..+++.+.+.+.. +.+ ....|...+
T Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~------------~~~---~~~~~~~~~ 338 (352)
T cd06174 274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD------------TGG---YGGVFLILA 338 (352)
T ss_pred HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------ccC---cchHHHHHH
Confidence 99999999999999999999999999999999999999999999888774431 111 133456666
Q ss_pred HHHHHHHHHHH
Q 012514 422 ALVAANLFVYV 432 (462)
Q Consensus 422 ~l~~~~~v~~~ 432 (462)
++.++..++++
T Consensus 339 ~~~~i~~i~~~ 349 (352)
T cd06174 339 ALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHhe
Confidence 66666655443
No 21
>PRK10504 putative transporter; Provisional
Probab=99.19 E-value=1e-08 Score=107.09 Aligned_cols=88 Identities=17% Similarity=0.065 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++.++.++|.|...|...+.+.|.+++++ +.++++++....++|..+|+.+++++.++.||++.|.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 46778888999999999999999999999875321 257889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHc
Q 012514 103 TIVMAVSLLIFIIG 116 (462)
Q Consensus 103 ~i~~~~~~iifl~~ 116 (462)
.+...++.+.....
T Consensus 171 ~~~~~l~~~~~~~~ 184 (471)
T PRK10504 171 IPVGIIGAIATLML 184 (471)
T ss_pred HHHHHHHHHHHHHh
Confidence 77666666544433
No 22
>PRK10054 putative transporter; Provisional
Probab=99.19 E-value=2e-09 Score=110.06 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT 103 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~ 103 (462)
.+.++++..+.+.+.+.+.|...+...|.+++++ +.+++++.|...|+|..+||.+++++.+ .+|+..|.+.+
T Consensus 96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~ 168 (395)
T PRK10054 96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA 168 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence 4455555666677777888888999898876432 2578999999999999999999999875 79999999888
Q ss_pred HHHHHHHHH
Q 012514 104 IVMAVSLLI 112 (462)
Q Consensus 104 i~~~~~~ii 112 (462)
+..+++++.
T Consensus 169 ~~~~i~~i~ 177 (395)
T PRK10054 169 ICSAFPLVF 177 (395)
T ss_pred HHHHHHHHH
Confidence 777776543
No 23
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.17 E-value=1.6e-08 Score=106.76 Aligned_cols=264 Identities=16% Similarity=0.186 Sum_probs=160.0
Q ss_pred cchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHH
Q 012514 21 KVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADV 100 (462)
Q Consensus 21 ~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~ 100 (462)
..+.+.+++..++++++.+++.|.-++++.++.++++ ..++.++.-...|+.-++||.++|.+-...|-...|.
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ 173 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL 173 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3457888888899999999999999999999987643 3578899999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHh
Q 012514 101 IITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKA 180 (462)
Q Consensus 101 i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a 180 (462)
+.+++.+++++.+...++.. +++..+-+.+.+-+...+ +++
T Consensus 174 inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~---------------------------------ryv--- 214 (524)
T PF05977_consen 174 INALSFLISILALLRWKPPP---PPSSLPRERFFSALREGL---------------------------------RYV--- 214 (524)
T ss_pred HHHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHH---------------------------------HHH---
Confidence 99998888766554433221 111111000010000000 000
Q ss_pred hhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCcc---ccc
Q 012514 181 AILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPA---SVF 257 (462)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~---~~~ 257 (462)
...+.+..++.. ..+|.....-....+...+.+ .++ ..+. .+.
T Consensus 215 ------------------------~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a~~---~l~----~~a~~yGll~ 260 (524)
T PF05977_consen 215 ------------------------RSSPPLRSVLLR---SFLFNLFASAVWALLPLFARD---VLG----GGASGYGLLL 260 (524)
T ss_pred ------------------------hcchHHHHHHHH---HHHHHHhhhHHHHhhhHHHHH---HhC----CcHHHHHHHH
Confidence 000111111111 111111111011112222321 111 1122 233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHH
Q 012514 258 GLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLA 337 (462)
Q Consensus 258 ~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli 337 (462)
+.-++. -+.+.++.+..++. ++..+-+..+.++.+++++.+++. -+.|..+
T Consensus 261 a~~gvG-----ai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~------------------~~~~~~~ 311 (524)
T PF05977_consen 261 AAFGVG-----AILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS------------------PSFWLAL 311 (524)
T ss_pred HHHHHH-----HHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc------------------hHHHHHH
Confidence 222333 33334444433442 234445667777777777666543 2345556
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 338 PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 338 ~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+..++.|++-.....+....+.+.+|++++|+.++++......+..+|+.+.+.+
T Consensus 312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~l 366 (524)
T PF05977_consen 312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFL 366 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999877766666666665543
No 24
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.16 E-value=7.8e-09 Score=106.86 Aligned_cols=86 Identities=12% Similarity=0.180 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---hhhhhccchhhHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVV---VYVQEHVSWGAAD 99 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~---~~l~~~~g~~~~F 99 (462)
+.+.++++..+.++|.|...+...++++|.+++++ +..++++++.+.++|.++++.++ +.+.+..+|++.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 34678899999999999999999999999987543 25788999999999999999999 7776778999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012514 100 VIITIVMAVSLLIFI 114 (462)
Q Consensus 100 ~i~~i~~~~~~iifl 114 (462)
.+.++..++.++..+
T Consensus 200 ~~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 200 GLQLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHHHHHHh
Confidence 997666665554433
No 25
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.16 E-value=8e-09 Score=108.92 Aligned_cols=310 Identities=13% Similarity=0.036 Sum_probs=162.5
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.++|.|++.|...+.+.+.+.+++ ++.++++++....++|..+||.+++++.++.||++.|++.
T Consensus 93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~ 167 (495)
T PRK14995 93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLIN 167 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence 47888999999999999999988888888775422 1367899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchh-H-----HHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTP-M-----LQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEF 176 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~-~-----~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 176 (462)
....++.+++.....+.-++++.++..... + ...+..+++..... +.+..... .. -....
T Consensus 168 ~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-------~~------~~~~~ 233 (495)
T PRK14995 168 VPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKG-FLSLWVTS-------LT------LLTGA 233 (495)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcccc-CCchHHHH-------HH------HHHHH
Confidence 776666655443332221111111111111 0 01112222221000 00000000 00 00000
Q ss_pred -hhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCee-eCcc
Q 012514 177 -LDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFL-IPPA 254 (462)
Q Consensus 177 -ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~-ip~~ 254 (462)
+-.+....+.. ...+..|+++++.. .+....... ......+.-....+..+-+... | +. ...+
T Consensus 234 ~~l~~f~~~e~~-~~~p~~~~~lf~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~lq~v~---g--~s~~~ag 298 (495)
T PRK14995 234 LLLGLFIRTQLA-ASRPMIDMRLFTHR------IILSGVVMA---MTAMITLVGFELLMAQELQFVH---G--LSPLEAG 298 (495)
T ss_pred HHHHHHHHHHhc-CCCCCcCHHHhCCc------ccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHc---C--CCHHHHH
Confidence 00000000000 00011122222211 111111111 1111111000011111111111 1 10 1112
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
.+.....+...+..|+..++. +|.+ +.+-+..|+++.+++++....... ..+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~----~r~g-------~~~~~~~g~~~~~~~~~~l~~~~~---------------~~~~~ 352 (495)
T PRK14995 299 MFMLPVMVASGFSGPIAGILV----SRLG-------LRLVATGGMALSALSFYGLAMTDF---------------STQQW 352 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcC-------chHHHHHHHHHHHHHHHHHHHhcC---------------CCchH
Confidence 333334555666666666644 3432 222345677777777765543211 12334
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+.....++.++|-.+..+.....+.+..|++.+|..++++.+...+|..+|..+.+.+
T Consensus 353 ~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 353 QAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678899999999999999999999999999999999998888888777666544
No 26
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.14 E-value=8.1e-09 Score=119.59 Aligned_cols=285 Identities=13% Similarity=0.041 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++.++.++|.+++.|...+++.|.+++++ +..+.+++.++.++|.++||.++|++....+|+..|.+.
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~ 180 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL 180 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 47889999999999999999999999999998643 357899999999999999999999999989999998544
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI 182 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i 182 (462)
++..++++++.... ++.+++....+. . ........+...
T Consensus 181 ~~~~~~~~~~~~~~----~~~~~~~~~~~~------------------~------------------~~~~~~~~~~~~- 219 (1140)
T PRK06814 181 MGIAVLGWLASLFI----PKTGNAAPDLKI------------------D------------------RNIIRSTITLLK- 219 (1140)
T ss_pred HHHHHHHHHHHhhC----CCCCCCCCCCee------------------c------------------cchHHHHHHHHH-
Confidence 44333333322221 111111000000 0 000000000000
Q ss_pred hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV 262 (462)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l 262 (462)
.+-..+.+ ..+.+....++.++....+.+..+... .++ .-..-.+++.+...+
T Consensus 220 --------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g-~~~~~~g~~~~~~~~ 272 (1140)
T PRK06814 220 --------------------YAKADKRI---WLAILGISWFWLVGAVVLSQLPLLAKE---TLG-GDENVATLFLAVFSV 272 (1140)
T ss_pred --------------------HHhcCchH---HHHHHHHHHHHHHHHHHHHHhHHHHHH---HcC-CchHHHHHHHHHHHH
Confidence 00000111 122222233333332222222222211 112 000112345566666
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH-hhhhcccCCC-CCCcccchhhHHHHH
Q 012514 263 GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKK-RLGVVEENPT-KGSLSMSVFWLAPQS 340 (462)
Q Consensus 263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~-~~~~~~~~g~-~~~~~~s~~wli~~~ 340 (462)
..++...+..++. +++ ...+.+.+|.++.+++.+.+++.... ......--.. .-....+.|+++..+
T Consensus 273 g~~ig~~~~g~l~----~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1140)
T PRK06814 273 GVAVGSFLASKLS----EGR-------ITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDL 341 (1140)
T ss_pred HHHHHHHHHHHHh----CCc-------eeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHH
Confidence 6666666666532 221 12233455555555554433331000 0000000000 000013455666778
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++.+++..+..+...+++.+.+|++.+|.++|++.+...+|..+++.+.+.+
T Consensus 342 ~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 342 FGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred HHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999988877754
No 27
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.12 E-value=7.7e-09 Score=107.87 Aligned_cols=283 Identities=13% Similarity=0.048 Sum_probs=149.1
Q ss_pred hHHHHHH-HHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 24 EVVFFLA-IYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 24 ~~~~~~~-L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
.+.++.+ .++.++|.|..-+...+...+.+++ ++.++.++.+.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR-------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh-------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 4444443 3566888887655556677776631 1257899999999999999999999999989999999998
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI 182 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i 182 (462)
++..+++.+...+.++.-.. ++..+... ....+.... . . ........+..
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~------------~~~~~~~~~---~-------~----~~~~~~~~~~~-- 229 (455)
T TIGR00892 180 GGLLLHCCVCGALMRPVGPS--QRVSKSKS------------KEGLPPDGS---T-------K----KLSKKSTAEKI-- 229 (455)
T ss_pred HHHHHHHHHHHHHhCCCCcc--cccccccc------------cccCCCCCc---c-------c----cccccchhhhh--
Confidence 88777665544433321100 00000000 000000000 0 0 00000000000
Q ss_pred hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhHH
Q 012514 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTAV 262 (462)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~l 262 (462)
. ...+++++ .+ +.+ ....+...+....+.+..+.+..+.. +.... ....+.+.++..+
T Consensus 230 ---~-----~~~~~~~~-----~~-~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s---~~~~g~~~~~~~~ 287 (455)
T TIGR00892 230 ---N-----RFLDFSLF-----TH-RGF---LVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD---EYEAAFLLSIIGF 287 (455)
T ss_pred ---h-----hhcchHHh-----cC-chH---HHHHHHHHHHHHHccchHHHHHHHHH--HcCCC---HHHHHHHHHHHHH
Confidence 0 00000000 01 111 22222222233333222222222222 11111 0112345555566
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCccch--hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHH
Q 012514 263 GMIISVTFYEKILVPVLRRATGNERGIQILQR--IGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQS 340 (462)
Q Consensus 263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~k--i~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~ 340 (462)
..++..|+..++.. |... ++.++ +.+++++.+++++..... .+.++++...
T Consensus 288 ~~~~~~~~~g~l~d----~~~~-----~~~~~~~~~~~~~~~~l~~ll~~~~------------------~~~~~~~i~~ 340 (455)
T TIGR00892 288 VDIFARPSCGLIAG----LKWI-----RPHVQYLFSFALLFNGLTHLLCALA------------------GDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHHHHHhc----cccc-----CHHHHHHHHHHHHHHHHHHHHHHHh------------------chHHHHHHHH
Confidence 66666666665432 2111 12222 233444444443332211 1345555667
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++.+++.....+...+.+.+..|++.+|..+|++.....+|+.+|+.+.+.+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l 392 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL 392 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence 8889999999999999999999999999999999999999999998887643
No 28
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.12 E-value=3.8e-09 Score=104.96 Aligned_cols=266 Identities=18% Similarity=0.265 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT 103 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~ 103 (462)
.+.++++..+.++|.+...|...+++.|.+++++ +.+.+++...+.++|.++++.+++++.++++|++.|.+.+
T Consensus 85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred HHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 4588899999999999999999999999998754 2578999999999999999999999998899999999988
Q ss_pred HHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhhh
Q 012514 104 IVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAIL 183 (462)
Q Consensus 104 i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i~ 183 (462)
+..+++.++.....+ +++++... ..+ . +.+ + ..+.
T Consensus 159 ~~~~~~~il~~~~~~---~~~~~~~~---------------~~~---~------------------~~~--~-~~~~--- 193 (352)
T PF07690_consen 159 ILSLIAAILFILFLP---EPPPPRER---------------ESP---K------------------ESE--S-KKPK--- 193 (352)
T ss_dssp HHHHHHHHHHHCCC------STTTT-----------------SS---T------------------TTT-----HHH---
T ss_pred chhhhhhhhHhhhhh---hccccccc---------------ccc---c------------------ccc--c-cccc---
Confidence 888888764333211 11111000 000 0 000 0 0000
Q ss_pred cCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCee--eCccccchhhH
Q 012514 184 EDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFL--IPPASVFGLTA 261 (462)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~--ip~~~~~~~n~ 261 (462)
+. ...++ ...+.+.+. .+++....+...+.........+ +....+ +. .....+..+..
T Consensus 194 -~~------~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~--~~~~~~~~~~~~~~~ 253 (352)
T PF07690_consen 194 -PL------KPGFK-----SLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLY---LQEVLG--FSGPSQAGLLFSIFG 253 (352)
T ss_dssp -CC------CH-CT-----HHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHH---CCHHHH--CCTHHHHHHHHHHHH
T ss_pred -cc------ccccc-----cccccchhh---hhhhhhhHHHHHHHHhhcccchh---hhhccC--CCHHHHHHHHHHHHH
Confidence 00 00010 111111111 12222222222222222222221 111111 11 11123344445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHH
Q 012514 262 VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSI 341 (462)
Q Consensus 262 l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~ 341 (462)
+..++..++..++. +|. +..++..+......++.+...+... ..+..|.+...+
T Consensus 254 ~~~~~~~~~~~~l~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 307 (352)
T PF07690_consen 254 IVGIIGSLLAGRLS----DRF-------GRRRRLLIAILLLILGALGLLLLPF---------------SSSPVWLIIALF 307 (352)
T ss_dssp HHHHHHHHHHHHHH----HHT-------TCHHHHHHHHHHHHHHHHHHCCSHH---------------HCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHc-------CcHHHHHHHHHHHHHHHHHHHHHHH---------------hhhHHHHHHHHH
Confidence 55555555655544 332 2233333444444444433332211 123456666778
Q ss_pred HHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHH
Q 012514 342 ISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSS 386 (462)
Q Consensus 342 l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~ 386 (462)
+.+++..+..+.....+.+..|++.+|.++|+.....++|..+|+
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 308 LIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999999999999999999999999999999999999998874
No 29
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.12 E-value=3.2e-08 Score=103.30 Aligned_cols=84 Identities=12% Similarity=0.176 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhhHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV-SWGAADVII 102 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i~ 102 (462)
...+++..++.++|.|..-|.......+.+++++ +.++.++++.+.++|.++++.+++++.+.. ||+..|.+.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 5567888889999999999999999999886432 368899999999999999999999998884 999999987
Q ss_pred HHHHHHHHHHH
Q 012514 103 TIVMAVSLLIF 113 (462)
Q Consensus 103 ~i~~~~~~iif 113 (462)
++..++..++.
T Consensus 205 ~~~~~~~~~~~ 215 (465)
T TIGR00894 205 GIVGCAWSLLW 215 (465)
T ss_pred hHHHHHHHHHH
Confidence 77665554433
No 30
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.09 E-value=6e-08 Score=102.15 Aligned_cols=86 Identities=6% Similarity=0.125 Sum_probs=70.3
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh-ccchhhHHH
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE-HVSWGAADV 100 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~-~~g~~~~F~ 100 (462)
.+.+.+++..++.+++.+...+...++..|.+++++ +.++.++.-.+.++|.++++.+.+++.+ ..||+..|.
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 346777778888899999999999999999987432 2567888889999999999999999988 469999999
Q ss_pred HHHHHHHHHHHHH
Q 012514 101 IITIVMAVSLLIF 113 (462)
Q Consensus 101 i~~i~~~~~~iif 113 (462)
+.++.+++..+..
T Consensus 179 i~a~l~ll~~l~~ 191 (491)
T PRK11010 179 LMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 9877766665443
No 31
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.08 E-value=5.3e-08 Score=101.75 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------hccch
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ--------EHVSW 95 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~--------~~~g~ 95 (462)
...++++.++.++|.|+.-|...++++|.+++++ +..+.+++-.+..+|.++++.+++.+. +.+||
T Consensus 120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 193 (479)
T PRK10077 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193 (479)
T ss_pred HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCh
Confidence 5667889999999999999999999999987532 256788888899999999887766543 35799
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 012514 96 GAADVIITIVMAVSLLIF 113 (462)
Q Consensus 96 ~~~F~i~~i~~~~~~iif 113 (462)
++.|.+.++..++..+..
T Consensus 194 r~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 194 RYMFASEAIPALLFLMLL 211 (479)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998777666655433
No 32
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.07 E-value=4.5e-08 Score=98.25 Aligned_cols=262 Identities=12% Similarity=0.113 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc--------
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS-------- 94 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g-------- 94 (462)
+.+.++....+.+++.+...+...+++.|.+++++ +..+.++...+.++|.++++.+++++..+.+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 44555555556778888889999999999985422 2578899999999999999999999888778
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccc
Q 012514 95 WGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL 174 (462)
Q Consensus 95 ~~~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 174 (462)
|+..|.+.++..+++.++.+...+.-.+.+++++ +. +.
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~---~~------------------------------------~~--- 193 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKEPQEDASVPK---PL------------------------------------TQ--- 193 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCcccccch---hH------------------------------------HH---
Confidence 9999999888777766543332221000000000 00 00
Q ss_pred hhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCcc
Q 012514 175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPA 254 (462)
Q Consensus 175 ~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~ 254 (462)
...+. ++ +.-..+...++..+.+...++...+.+..+.+..+... .| .+++
T Consensus 194 ~~~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g----~~~~ 244 (356)
T TIGR00901 194 AVLKP----------------IR-----EFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD----MG----FSKE 244 (356)
T ss_pred HHHHH----------------HH-----HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC----CCHH
Confidence 00000 00 00000010112333333444444444444444333322 23 3343
Q ss_pred cc---chhhHH-HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 012514 255 SV---FGLTAV-GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLS 330 (462)
Q Consensus 255 ~~---~~~n~l-~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 330 (462)
.. ...+.. ..++..++..++. +|. +..+.+.++.++.+++.....+.... .+... . ..
T Consensus 245 ~~g~~~~~~~~~~~~~g~~~~g~l~----~r~-------g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~-~-----~~ 306 (356)
T TIGR00901 245 EIALVAKINGLLGAILGGLIGGIIM----QPL-------NILYALLLFGIVQALTNAGFVWLASN-GHHDG-I-----TF 306 (356)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH----hhh-------hHHHHHHHHHHHHHHHHHHHHHHHhc-Ccccc-c-----cc
Confidence 32 222232 2333334444433 332 23334666777776666544433110 00000 0 01
Q ss_pred cchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHh
Q 012514 331 MSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIG 379 (462)
Q Consensus 331 ~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~ 379 (462)
.+.++++...++.++++.+..+....+..+.+|+++||.++|+.....+
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2344566677888999999999999999999999999999999876543
No 33
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.06 E-value=2e-08 Score=104.92 Aligned_cols=308 Identities=11% Similarity=0.086 Sum_probs=166.1
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.++|.|...|...+++.|.+++++ +.+++++++.+.++|..+|+.+++++.++++|++.|.+.
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 47788899999999999999999999999986422 367899999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHH--------HHHHHHHHhCCCCCCCCCCccccccccccccccccccccc
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPML--------QVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL 174 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~--------~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 174 (462)
++..++..++.....+.-+ +.+.++..... ..+.....+.....+ ..... ........-....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~ 233 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDK--PAASENFDFLGLLLLSVGLGSLLYGLSEGPERGW------FDSNE-ILILSITGLVAII 233 (485)
T ss_pred hHHHHHHHHHHHHHcCCcc--ccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC------CCchH-HHHHHHHHHHHHH
Confidence 7666655554333222211 11111111110 011111111110000 00000 0000000000000
Q ss_pred hhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCc-
Q 012514 175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPP- 253 (462)
Q Consensus 175 ~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~- 253 (462)
.+..+. ...+. +..++++++. +.+ ....+...+....+......+..+..+ ..| .++
T Consensus 234 ~~~~~~--~~~~~----~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g----~s~~ 291 (485)
T TIGR00711 234 AFVVWE--LTDDN----PLVDLRLFKY------RNF---TIGCVYMSLLGLGLYGSFYLLPLYLQQ---VLG----YTAL 291 (485)
T ss_pred HHHHHH--HcCCC----CccCHHHHcC------CCh---HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC----CCHH
Confidence 000000 00000 0011111111 111 111111222222222222222222111 112 222
Q ss_pred --cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 012514 254 --ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSM 331 (462)
Q Consensus 254 --~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 331 (462)
+.+.....+..++..|+..++. +|. +..+-+.+|.++.+++++...+.- ....
T Consensus 292 ~~g~~~~~~~~~~~~~~~~~g~l~----~r~-------~~~~~~~~g~~~~~~~~~~~~~~~--------------~~~~ 346 (485)
T TIGR00711 292 QAGLHILPVGLAPMLSSPIAGRMG----DKI-------DPRKLVTIGLILYAVGFYWRAFTF--------------TPDT 346 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhc-------CcHHHHHHHHHHHHHHHHHHhccC--------------CCCC
Confidence 3445555666677777776643 232 222335567777777766554210 0123
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+.++.+...++.++|..+..+.....+.+..|++.+|.++|++.....+|+.+|+.+.+.+
T Consensus 347 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555678899999999888888888899999999999999999999998888776644
No 34
>PRK12382 putative transporter; Provisional
Probab=99.05 E-value=1.3e-07 Score=96.39 Aligned_cols=276 Identities=11% Similarity=0.169 Sum_probs=158.7
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+...++++..+.++|.+...|...+.+.|..++++ +.++++++..+.++|..+++.+++++.+.+||+..+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 46778888899999999999988889999886432 257889999999999999999999998889998877664
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI 182 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i 182 (462)
.+..++.. ...++ .++.+++++ . +. +..+
T Consensus 185 ~~~~~~~~---~~~~~-~~~~~~~~~----------------------~------------------~~---~~~~---- 213 (392)
T PRK12382 185 MVLPLLAW---AFNGT-VRKVPAHAG----------------------E------------------RP---SLWS---- 213 (392)
T ss_pred HHHHHHHH---HHHHh-ccCCCCCcc----------------------c------------------Cc---hHHH----
Confidence 44332222 22111 111011000 0 00 0000
Q ss_pred hcCCCCCCCCCCCcccccccchHHHHHHHh-HHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccchhhH
Q 012514 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLN-VIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFGLTA 261 (462)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~-~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~~n~ 261 (462)
..|.+.+ .+.+.+....+.... +....... +. + +. +.........
T Consensus 214 -----------------------~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~--~~--~--~~-~~~~~~~~~~ 259 (392)
T PRK12382 214 -----------------------VVGLIWKPGLGLALQGVGFAVIG----TFVSLYFA--SK--G--WA-MAGFTLTAFG 259 (392)
T ss_pred -----------------------HHHHHHHhHHHHHHHHHHHhHHH----HHHHHHHH--hc--C--Cc-hhHHHHHHHH
Confidence 0000000 001111111111110 00111111 11 1 11 1122233344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHH
Q 012514 262 VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSI 341 (462)
Q Consensus 262 l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~ 341 (462)
+..++..++..++. +|. ++.+.+.++.++.+++++..... -+.++.+...+
T Consensus 260 ~~~~~~~~~~g~l~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 310 (392)
T PRK12382 260 GAFVLMRVLFGWMP----DRF-------GGVKVAIVSLLVETVGLLLLWLA------------------PTAWVALAGAA 310 (392)
T ss_pred HHHHHHHHHHHHHH----Hhc-------CCCeehHHHHHHHHHHHHHHHHc------------------ccHHHHHHHHH
Confidence 44455555555433 332 23344566777777776654432 12344555678
Q ss_pred HHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHH
Q 012514 342 ISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLA 421 (462)
Q Consensus 342 l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la 421 (462)
+.++++....|.....+.+..|++.||..+|++.....+|+.+++.+.+.+.. ..+ ....|.+.+
T Consensus 311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~------------~~g---~~~~~~~~~ 375 (392)
T PRK12382 311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT------------SFG---YPSVFLAGA 375 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhC---chHHHHHHH
Confidence 89999999999888889999999999999999999999999998887764331 111 234466666
Q ss_pred HHHHHHHHHHHh
Q 012514 422 ALVAANLFVYVV 433 (462)
Q Consensus 422 ~l~~~~~v~~~~ 433 (462)
++.++..++.+.
T Consensus 376 ~~~~~~~~~~~~ 387 (392)
T PRK12382 376 ISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHh
Confidence 666666555443
No 35
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.04 E-value=2.7e-07 Score=93.21 Aligned_cols=85 Identities=9% Similarity=0.146 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.+++.+...+...++..|.+++++ +.+++++.+...++|..+++.+++++.+..+|++.|.+.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 35677888889999999999999999999876432 257899999999999999999999999888999999987
Q ss_pred HHHHHHHHHHH
Q 012514 103 TIVMAVSLLIF 113 (462)
Q Consensus 103 ~i~~~~~~iif 113 (462)
++..++..+..
T Consensus 152 ~~~~~~~~~~~ 162 (377)
T PRK11102 152 ALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHH
Confidence 77666665443
No 36
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.03 E-value=1.4e-07 Score=94.96 Aligned_cols=88 Identities=8% Similarity=0.153 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.+++...+.+.+.+...|...++..+..++++ |.+....++.+...++|..+|+.+++++.+.+||++.|.+.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 35556666666676777777887787777654322 11122357788889999999999999999889999999998
Q ss_pred HHHHHHHHHHHH
Q 012514 103 TIVMAVSLLIFI 114 (462)
Q Consensus 103 ~i~~~~~~iifl 114 (462)
++..++..++.+
T Consensus 162 ~~~~~~~~~~~~ 173 (375)
T TIGR00899 162 ALAFVLCGVLVW 173 (375)
T ss_pred HHHHHHHHHHHH
Confidence 877666655443
No 37
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.03 E-value=3.1e-07 Score=92.68 Aligned_cols=87 Identities=8% Similarity=0.134 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.++|.+...+...+++.|.+++++ +.+.+++++...++|..+++.+++++.++.+|+..|.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 46778888899999999999999999999987432 257899999999999999999999998889999999987
Q ss_pred HHHHHHHHHHHHH
Q 012514 103 TIVMAVSLLIFII 115 (462)
Q Consensus 103 ~i~~~~~~iifl~ 115 (462)
++..++..+....
T Consensus 166 ~~~~~~~~~~~~~ 178 (385)
T TIGR00710 166 SLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666554443
No 38
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.98 E-value=1.7e-07 Score=96.68 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=73.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514 256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW 335 (462)
Q Consensus 256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w 335 (462)
+..+..+..++..|+..++. +|.+ ..+-+.+|.++.+++++...+.. .+.++
T Consensus 262 ~~~~~~i~~ii~~~~~~~l~----~r~g-------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 313 (437)
T TIGR00792 262 MGSIAIVAGLIGVLLFPRLV----KKFG-------RKILFAGGILLMVLGYLIFFFAG-----------------SNLPL 313 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhC-------cHHHHHHHHHHHHHHHHHHHHcc-----------------hhHHH
Confidence 44445556666666666544 3432 22335567777777766554321 12334
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVP-------DSMRSLGIAFYLSVIGAANFLSSFLITVVD 393 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~ 393 (462)
.+...++.+++.....+...+++.+.+| ++.+|.++|++.+...+|..+++.+.+.+-
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 314 ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999888765 567899999999988888888877776543
No 39
>PRK11043 putative transporter; Provisional
Probab=98.98 E-value=1.9e-07 Score=95.38 Aligned_cols=85 Identities=9% Similarity=0.142 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.++|.+...+...++..|.+++++ +.+.++......++|..+++.+++++.+++||+..|.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 46777888888899988888888889999886532 246788888889999999999999999999999999987
Q ss_pred HHHHHHHHHHH
Q 012514 103 TIVMAVSLLIF 113 (462)
Q Consensus 103 ~i~~~~~~iif 113 (462)
++..++..+..
T Consensus 167 ~~~~~~~~~~~ 177 (401)
T PRK11043 167 FAITLLLILPT 177 (401)
T ss_pred HHHHHHHHHHH
Confidence 76666655443
No 40
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.97 E-value=5.2e-07 Score=91.86 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.+++.|...+...+++.|.+++++ +.+++++++...++|..+++.+++++.+..+|+..|.+.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 35667778888999999989999999999886432 257889999999999999999999988888999999987
Q ss_pred HHHHHHHHHH
Q 012514 103 TIVMAVSLLI 112 (462)
Q Consensus 103 ~i~~~~~~ii 112 (462)
++..++..+.
T Consensus 164 ~~~~~i~~~~ 173 (392)
T PRK10473 164 AAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHH
Confidence 7766655554
No 41
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.95 E-value=5.3e-07 Score=92.20 Aligned_cols=83 Identities=7% Similarity=0.105 Sum_probs=70.8
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI 101 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i 101 (462)
.+.+.+++..++.+++.|...|...++..|.+++++ +.++..+.+.+.|+|.++++.+++++.+..||++.|.+
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 357888999999999999999999999999986432 25789999999999999999999999998999999998
Q ss_pred HHHHHHHHH
Q 012514 102 ITIVMAVSL 110 (462)
Q Consensus 102 ~~i~~~~~~ 110 (462)
.++..++..
T Consensus 180 ~~~l~~~~~ 188 (394)
T PRK10213 180 AAVMGVLCI 188 (394)
T ss_pred HHHHHHHHH
Confidence 766555443
No 42
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.94 E-value=3.6e-07 Score=93.34 Aligned_cols=72 Identities=8% Similarity=0.184 Sum_probs=51.2
Q ss_pred cCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Q 012514 39 GGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFI 114 (462)
Q Consensus 39 G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~~~~iifl 114 (462)
+...|...++..|..++++ |....+.++...+.++|.++|+.+++++.+++||+..|.+.++..++..+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 120 STANPQMFALAREHADKTG----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred HhhHHHHHHHHHHHhhhcc----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777554322 11122336888899999999999999999889999999987766655554433
No 43
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.94 E-value=3.3e-07 Score=94.92 Aligned_cols=82 Identities=20% Similarity=0.168 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.+++..++.+++.|..-|...+.+.+.+++++ +..++++++.+.++|..+++.+++++.+.+||++.|.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 35666667777888889888999999999986432 367899999999999999999999999989999999987
Q ss_pred HHHHHHHH
Q 012514 103 TIVMAVSL 110 (462)
Q Consensus 103 ~i~~~~~~ 110 (462)
++..++..
T Consensus 184 ~i~~~~~~ 191 (434)
T PRK11663 184 GIIAIVVG 191 (434)
T ss_pred HHHHHHHH
Confidence 66555443
No 44
>TIGR00895 2A0115 benzoate transport.
Probab=98.93 E-value=4.4e-07 Score=91.64 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.++|.|...+...+++.|.+++++ +.++++++..+.++|..+++.+.+++.++.+|+..|.+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 46778888999999999999999999999986422 367899999999999999999999999989999999987
Q ss_pred HHHHHHHHHH
Q 012514 103 TIVMAVSLLI 112 (462)
Q Consensus 103 ~i~~~~~~ii 112 (462)
++..++..++
T Consensus 178 ~~~~~~~~~~ 187 (398)
T TIGR00895 178 GIAPLLLLLL 187 (398)
T ss_pred hhHHHHHHHH
Confidence 6554444433
No 45
>PRK09848 glucuronide transporter; Provisional
Probab=98.93 E-value=2.4e-07 Score=96.35 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=64.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCch-----
Q 012514 291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDS----- 365 (462)
Q Consensus 291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~----- 365 (462)
..+.+.+|.++.+++++...+.. ..+.++.+...++.++|+.+..+...++..+.+|++
T Consensus 293 ~~~~~~~g~~~~~i~~~~~~~~~----------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g 356 (448)
T PRK09848 293 KKNTFLIGALLGTCGYLLFFWVS----------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTG 356 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhC
Confidence 34556778888777776554311 124455556678899999999999999999998864
Q ss_pred --hhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 366 --MRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 366 --~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
.+|.++|++.+..-+|..+|+.+.+.+
T Consensus 357 ~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 357 VRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999988888888777644
No 46
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.92 E-value=6.5e-07 Score=92.06 Aligned_cols=79 Identities=14% Similarity=0.277 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI 101 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i 101 (462)
.+.+.++++..+.++|.|...+...++..|.+++++ +.++.+++..+.++|.++++.+.+++.+.++|++.|.+
T Consensus 104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 347788889999999999999999999999986532 25678899999999999999999999888999999988
Q ss_pred HHHHH
Q 012514 102 ITIVM 106 (462)
Q Consensus 102 ~~i~~ 106 (462)
+++..
T Consensus 178 ~~~~~ 182 (426)
T PRK12307 178 GLLPV 182 (426)
T ss_pred HHHHH
Confidence 55433
No 47
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.91 E-value=2.9e-07 Score=96.70 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.+++.|+..+...+++.|.+++++ +..++++++.+.++|.++++.+.+++.++++|++.|.+.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 46778888999999999999999999999986432 257789999999999999999999999999999999875
Q ss_pred HHHHH
Q 012514 103 TIVMA 107 (462)
Q Consensus 103 ~i~~~ 107 (462)
++..+
T Consensus 181 ~~~~~ 185 (496)
T PRK03893 181 ILPII 185 (496)
T ss_pred HHHHH
Confidence 44433
No 48
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.91 E-value=1.1e-06 Score=89.48 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.+++.|...+...++..|.+++++ +.++.+++..+.++|.+++|.+++++.+..||+..|.+.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 46778888888999999888888888888775422 246778888899999999999999998888999999987
Q ss_pred HHHHHHHHH
Q 012514 103 TIVMAVSLL 111 (462)
Q Consensus 103 ~i~~~~~~i 111 (462)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 665554433
No 49
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.91 E-value=1.2e-07 Score=97.66 Aligned_cols=138 Identities=10% Similarity=0.075 Sum_probs=87.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
.+.+++.+..++..++..++. +|.+ +.+.+.++.++.+++++..++. .+++
T Consensus 266 ~~~~~~~~~~~~~~~~~g~l~----dr~g-------~~~~~~~~~~l~~~~~~l~~~~------------------~~~~ 316 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPFII----NRIG-------AKNALLLAGTIMAVRIIGSGFA------------------TGPL 316 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhC-------cchhhHHHHHHHHHHHHHHHhc------------------ccHH
Confidence 455666666666666666644 3332 2234566777777766655432 2355
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH-HHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF-YLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL 413 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~-~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l 413 (462)
+++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+.+.+ .|..+ .
T Consensus 317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l------------~~~~G---~ 381 (420)
T PRK09528 317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNL------------YDSIG---F 381 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHH------------HHhhC---c
Confidence 666677888998888888888999999999999887654 5566777777777666533 22221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 012514 414 DKFYWLLAALVAANLFVYVVVAR 436 (462)
Q Consensus 414 ~~~f~~la~l~~~~~v~~~~~~~ 436 (462)
...|..++++.++..++.+...|
T Consensus 382 ~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 382 QGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 33466667766665555554433
No 50
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.90 E-value=2.3e-07 Score=92.89 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.++|.|...+...+...+.++++ +..+.+++..+.++|.++++.+.+.+.+..+|++.|.+.
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPDK-------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcc-------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 4677888888999999988888888777776531 256789999999999887666666666778999999987
Q ss_pred HHHHHHHHHHH
Q 012514 103 TIVMAVSLLIF 113 (462)
Q Consensus 103 ~i~~~~~~iif 113 (462)
++..++..+..
T Consensus 163 ~~~~~~~~~~~ 173 (377)
T TIGR00890 163 GIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHHH
Confidence 77766655443
No 51
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.90 E-value=1.4e-06 Score=89.80 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+...++++.++.++|.|..-+...+...|.+++++ +.+.++++..+.++|..+|+.+++++.++.||++.|.+.
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 46788899999999998776666777888876532 246799999999999999999999998888999999988
Q ss_pred HHHHHHHHHH
Q 012514 103 TIVMAVSLLI 112 (462)
Q Consensus 103 ~i~~~~~~ii 112 (462)
++..+++.+.
T Consensus 177 ~~~~~i~~~~ 186 (413)
T PRK15403 177 AVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHH
Confidence 7776666554
No 52
>TIGR00898 2A0119 cation transport protein.
Probab=98.90 E-value=1.1e-06 Score=92.51 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++.++.++|.|+..+...+++.|.+++++ +..+..++..+.++|.++++.++.++.+ |++.|.+.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 46788889999999999999999999999987543 2456777788889999999988877754 99999987
Q ss_pred HHHHHHHHHHHH
Q 012514 103 TIVMAVSLLIFI 114 (462)
Q Consensus 103 ~i~~~~~~iifl 114 (462)
++..++..+..+
T Consensus 250 ~i~~~~~~~~~~ 261 (505)
T TIGR00898 250 SLPTFLFFLLSW 261 (505)
T ss_pred HHHHHHHHHHHH
Confidence 776666655443
No 53
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.89 E-value=7.1e-07 Score=91.17 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV-SWGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i 101 (462)
+...++++.++.++|.|...+...+.+.|.+++ + +..+.+++..+.++|..+|+.+++++.++. +|+..|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-R------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-c------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 367788999999999999999999999888752 1 246788888999999999999999988875 89887765
Q ss_pred HHHHHHHH
Q 012514 102 ITIVMAVS 109 (462)
Q Consensus 102 ~~i~~~~~ 109 (462)
-++..++.
T Consensus 169 ~~~~~~~~ 176 (393)
T PRK09705 169 WALPAVVA 176 (393)
T ss_pred HHHHHHHH
Confidence 44443333
No 54
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.89 E-value=6.4e-07 Score=90.99 Aligned_cols=67 Identities=13% Similarity=0.001 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSW 95 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~ 95 (462)
+.+.++++.++.++|.|.+.|...+...|..++++ +.+.+++++.+.|+|..+|+.+.+++.+...+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 47788889999999999998888888887765421 25789999999999999999999998775433
No 55
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.88 E-value=9.3e-07 Score=90.39 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHH
Q 012514 28 FLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMA 107 (462)
Q Consensus 28 ~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~ 107 (462)
++..++.++|.|++.|...+++.|.+++++ +.++.++.....++|.++||.++|++.+. .|...|.+.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 556778999999999999999999997532 25789999999999999999999999874 47777777655544
Q ss_pred HHH
Q 012514 108 VSL 110 (462)
Q Consensus 108 ~~~ 110 (462)
++.
T Consensus 165 ~~~ 167 (393)
T PRK11195 165 LAA 167 (393)
T ss_pred HHH
Confidence 443
No 56
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.87 E-value=3.8e-06 Score=86.02 Aligned_cols=84 Identities=10% Similarity=0.172 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc-cchhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH-VSWGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i 101 (462)
+.+.+++...+.++..+...|...++..|..++++ +.++..+..++.++|.++++.+.+++.+. .||+..|.+
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 45656666666788899999999999999976532 25788888899999999999999888775 599999999
Q ss_pred HHHHHHHHHHH
Q 012514 102 ITIVMAVSLLI 112 (462)
Q Consensus 102 ~~i~~~~~~ii 112 (462)
.++..++..+.
T Consensus 167 ~a~~~l~~~l~ 177 (402)
T PRK11902 167 MAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHH
Confidence 77766655443
No 57
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.87 E-value=7.2e-07 Score=103.43 Aligned_cols=267 Identities=14% Similarity=0.104 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc--------c-c
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH--------V-S 94 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~--------~-g 94 (462)
.+.++++.++.+++.|.+.|...+++.|.+++++ +..+++++..+.++|.++|+.+++++.+. . +
T Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~ 176 (1146)
T PRK08633 103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILG 176 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 6778888999999999999999999999987643 26789999999999999999999998765 2 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccc
Q 012514 95 WGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL 174 (462)
Q Consensus 95 ~~~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 174 (462)
|.+.+.+..+...+..+++.+..+. .|..++... ++. . .....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----------~~~-----~------------------~~~~~ 219 (1146)
T PRK08633 177 RIAPAGLVLLAVAVLGLIFAYRLPK----VPAAAPEVF----------DKK-----K------------------YLFPK 219 (1146)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCcC----CCCCCcccc----------ccc-----c------------------cccHH
Confidence 3333333222222222222221111 111000000 000 0 00000
Q ss_pred hhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeee--C
Q 012514 175 EFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLI--P 252 (462)
Q Consensus 175 ~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~i--p 252 (462)
...+.... .-..+.+ ..+++...+++.......+.+..+.. ...+ +.. .
T Consensus 220 ~~~~~~~~---------------------l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g--~s~~~~ 270 (1146)
T PRK08633 220 LLWRNLKL---------------------LRSDRVL---WLAIIGLSYFWFISQLAQANFPAYAK---EVLG--LDNTFQ 270 (1146)
T ss_pred HHHHHHHH---------------------HhcCcHH---HHHHHHHHHHHHHHHHHHHhhHHHHH---HHhC--CCcHHH
Confidence 00000000 0000111 11222223333322212222221111 1112 101 1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 012514 253 PASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS 332 (462)
Q Consensus 253 ~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s 332 (462)
.+++.+...+..++..++..++. +|. .....+.+|.++.+++.+..... .+
T Consensus 271 ~g~~~~~~~ig~~~g~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~------------------~~ 321 (1146)
T PRK08633 271 VQYLLAASAIGIGIGSLLAGRLS----GRH-------IELGLVPLGALGLALSLFLLPTA------------------PS 321 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----CCc-------eEccchhHHHHHHHHHHHHHHHh------------------hh
Confidence 23344444444445545544432 332 23334556777666666655432 13
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
.++++...++.+++..+..+....++.+.+|++.||.++|+..+...+|..++..+...
T Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~ 380 (1146)
T PRK08633 322 LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL 380 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566677889999999999999999999999999999999998888888776655443
No 58
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.86 E-value=1.7e-06 Score=90.09 Aligned_cols=332 Identities=13% Similarity=0.034 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh--hhc----------
Q 012514 25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYV--QEH---------- 92 (462)
Q Consensus 25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l--~~~---------- 92 (462)
..+.+++.+.-++.+...+...++++|..++++++ .+.+++|+.+..|+|+++|+.++++. .+.
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 45566666777788888899999999999876432 24789999999999999999998875 221
Q ss_pred ---cchhhHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCcccccccccccccccc
Q 012514 93 ---VSWGAADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLC 169 (462)
Q Consensus 93 ---~g~~~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~ 169 (462)
.+++..|.++++.++++.++-.+.-|..+..+++..+.. .. +.++ ....
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---------------~~--------~~~~--~~~~--- 242 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---------------EA--------APPS--KHGE--- 242 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---------------hc--------cccc--ccch---
Confidence 166889999998888888766554333221011100000 00 0000 0000
Q ss_pred ccccchhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHh-ccCCCC-
Q 012514 170 HTKNLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATM-NREIGN- 247 (462)
Q Consensus 170 ~~~~~~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~-~~~~g~- 247 (462)
.......++.. + ..| |.+.+++..-.+.-+=|..+-+..|.+.-+...- +.+-..
T Consensus 243 ~~~~~~i~~~~-----~------~mP------------~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~ 299 (477)
T TIGR01301 243 EAFFGELFGAF-----K------YLP------------RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAK 299 (477)
T ss_pred hhhHHHHHHHH-----H------HCC------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhH
Confidence 00000000000 0 011 2333445555555555555555555554332110 000000
Q ss_pred ---CeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchh-hHHHHHHHHHHHHHHHHHHHhhh---hc
Q 012514 248 ---GFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRI-GIGMLFSIATMVFAALVEKKRLG---VV 320 (462)
Q Consensus 248 ---g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki-~iG~~l~~l~~~~~~~~~~~~~~---~~ 320 (462)
|... ..+-..+|.+...+ +..++.++.+|.+ ..++. .++.++.++|++...++.....+ ..
T Consensus 300 y~~gvr~-G~~~l~~~s~~~~i----~s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~ 367 (477)
T TIGR01301 300 YDDGVRA-GAFGLMLNSVVLGI----TSIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYD 367 (477)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 0000 12223334433333 3333333334432 22233 68888999999888876531100 00
Q ss_pred ccCCCCCCcccc-hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCc--hhhhHHHHHHHHHHhHHHHHHHHHHhhcccccc
Q 012514 321 EENPTKGSLSMS-VFWLAPQSIISGVADGFALVGLQEYFYDQVPD--SMRSLGIAFYLSVIGAANFLSSFLITVVDHVTD 397 (462)
Q Consensus 321 ~~~g~~~~~~~s-~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~--~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~ 397 (462)
..+++-. .+.. .+..+..+.+.|++-......=++++.+..|+ +-.|.+||+.+.+..+...+.++..+.+...
T Consensus 368 ~~~~~~~-~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~-- 444 (477)
T TIGR01301 368 GDGESLP-PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQL-- 444 (477)
T ss_pred ccccccC-cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0000000 0111 24556677889999999999999999999995 4569999999999999999998877754422
Q ss_pred cCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 012514 398 KSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARR 437 (462)
Q Consensus 398 ~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~ 437 (462)
+.+ -| .+.+.+-++.++++++.-+..-++
T Consensus 445 ------~g~-~~----~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 445 ------FGG-GN----LPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred ------cCC-CC----eeHHHHHHHHHHHHHHHHHHhCCC
Confidence 111 11 233555556666666665555544
No 59
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.84 E-value=2.1e-06 Score=89.46 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHhhhhhccchhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGL-LLGVTVVVYVQEHVSWGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~-~i~~~~~~~l~~~~g~~~~F~i 101 (462)
+.+.+++...+.+++.|...|...+...+.+++++ +..+.++++.+.++|. ++++++...+....+|+++|.+
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 35667777888899999999988888998876432 2578899999999986 5566654444344599999998
Q ss_pred HHHHHHHHHH
Q 012514 102 ITIVMAVSLL 111 (462)
Q Consensus 102 ~~i~~~~~~i 111 (462)
.++..++..+
T Consensus 193 ~~~~~~~~~~ 202 (452)
T PRK11273 193 PAFAAILVAL 202 (452)
T ss_pred HHHHHHHHHH
Confidence 7766665443
No 60
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.82 E-value=8e-07 Score=89.46 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------hccchh
Q 012514 25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ--------EHVSWG 96 (462)
Q Consensus 25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~--------~~~g~~ 96 (462)
..++++..+.++|.|...+...+++.|.+++++ +....++...+.++|.++++.+.+.+. +.++|+
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 357778889999999999999999999887543 257888999999999999988877654 357899
Q ss_pred hHHHHHHHHHHHHHH
Q 012514 97 AADVIITIVMAVSLL 111 (462)
Q Consensus 97 ~~F~i~~i~~~~~~i 111 (462)
+.|.+.++..+++..
T Consensus 171 ~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 171 IPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887766555543
No 61
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.79 E-value=8.9e-07 Score=91.33 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=90.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
...+++.+..++...+..++. +|+ +..+-+.++.++.++++........ ...+.+
T Consensus 255 ~~~~~~~i~~i~~~~~~g~l~----dr~-------g~r~~l~~~~~~~~v~~~l~~~~~~--------------~~~~~~ 309 (418)
T TIGR00889 255 IWMSLSQFSEIFFILTIPFFL----KRF-------GIKKVMLLSLVAWALRFGFFAYGDP--------------EYFGYA 309 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHh-------CcHHHHHHHHHHHHHHHHHHHHcCc--------------chhhHH
Confidence 344555555555555555543 332 2333456777777776655543210 011223
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHH-HHHhHHHHHHHHHHhhcccccccCCCccccCCCcc-c-
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYL-SVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNS-S- 411 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~-l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~-~- 411 (462)
.++...++.++++.+..+....++.+..|++.||.++|+.. ...++|..+|+.+.+.+. |..+. +
T Consensus 310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~------------~~~g~~~~ 377 (418)
T TIGR00889 310 LLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV------------EKMFAYGT 377 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------------HHhccccC
Confidence 34445688999999999999999999999999999999996 567888888887776432 11110 0
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514 412 -RLDKFYWLLAALVAANLFVYVVVAR 436 (462)
Q Consensus 412 -~l~~~f~~la~l~~~~~v~~~~~~~ 436 (462)
..+.-|...+++.++..++++++.|
T Consensus 378 ~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 378 FDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1233466666666666666666554
No 62
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.77 E-value=5.8e-06 Score=87.09 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------hccchhh
Q 012514 26 VFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ--------EHVSWGA 97 (462)
Q Consensus 26 ~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~--------~~~g~~~ 97 (462)
.+.++.++.++|.|+.-|...+++.+.+++++ +..+..+...+.++|..+|+.+..++. .++||++
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 47888899999999999999999999987643 245677788888888888876655443 2589999
Q ss_pred HHHHHHHHHH
Q 012514 98 ADVIITIVMA 107 (462)
Q Consensus 98 ~F~i~~i~~~ 107 (462)
.|++.++..+
T Consensus 194 ~f~i~~~~~l 203 (490)
T PRK10642 194 PFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHH
Confidence 9998655433
No 63
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.76 E-value=1.7e-06 Score=87.67 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc--hhhHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS--WGAADV 100 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g--~~~~F~ 100 (462)
+.+.++++..+.++|.|+..+...++..|.+++++ +.++++++..+.++|..+++.+++.+.+..+ |++.|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 46778888999999999999999999999987532 2578999999999999999999999887666 999998
Q ss_pred HHHHHHHHHH
Q 012514 101 IITIVMAVSL 110 (462)
Q Consensus 101 i~~i~~~~~~ 110 (462)
+.++..++.+
T Consensus 173 ~~~~~~~~~~ 182 (405)
T TIGR00891 173 ISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHH
Confidence 8665554443
No 64
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.76 E-value=3.1e-06 Score=86.04 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.+++.|...+...++..|.+++++ +.+.++++..+.++|..+++.+++++.+..+|++.|.+.
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 47888889999999999988888888888765422 246788888999999999999999998889999999998
Q ss_pred HHHHHHHHH
Q 012514 103 TIVMAVSLL 111 (462)
Q Consensus 103 ~i~~~~~~i 111 (462)
++..++..+
T Consensus 164 ~~~~~~~~~ 172 (382)
T PRK10091 164 AVFNIAVLA 172 (382)
T ss_pred HHHHHHHHH
Confidence 776655544
No 65
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.73 E-value=9e-06 Score=89.21 Aligned_cols=86 Identities=15% Similarity=0.243 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc----------
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH---------- 92 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~---------- 92 (462)
+.+.++++.++.++|.|+..|...+++.+.++++. +...+++......+|.++++.++.++...
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 46788889999999999999999999999986422 25678888888899999888776555432
Q ss_pred ---cchhhHHHHHHHHHHHHHHHHH
Q 012514 93 ---VSWGAADVIITIVMAVSLLIFI 114 (462)
Q Consensus 93 ---~g~~~~F~i~~i~~~~~~iifl 114 (462)
.+|++.|++.++..+++++.++
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGALT 352 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHH
Confidence 3688888887776665554433
No 66
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.72 E-value=3.5e-06 Score=87.05 Aligned_cols=308 Identities=15% Similarity=0.118 Sum_probs=170.3
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh----hcc---chh
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ----EHV---SWG 96 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~----~~~---g~~ 96 (462)
...+++...+..++...+.-+..+++.|..++.+. | .+..++-.+..++|.++...+.+.+. +.. +|.
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~--R---~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~ 177 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE--R---TRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR 177 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhh--h---hhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence 34456666677999999999999999999865442 2 45677777777888765555555443 221 577
Q ss_pred hHHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchh
Q 012514 97 AADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEF 176 (462)
Q Consensus 97 ~~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 176 (462)
+...+.++..+++.++.....|. ++++++.+ + +..++
T Consensus 178 ~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~--------------~----------------------------~~~~~ 214 (428)
T PF13347_consen 178 WMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ--------------E----------------------------KKISL 214 (428)
T ss_pred HHHHHHHHHHHHHhhhhhheeee-cccccccc--------------c----------------------------ccccc
Confidence 77776666666555554443332 00000000 0 00000
Q ss_pred hhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHH-hccCCCCCeeeCccc
Q 012514 177 LDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAAT-MNREIGNGFLIPPAS 255 (462)
Q Consensus 177 ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~-~~~~~g~g~~ip~~~ 255 (462)
.+.. +. -.++ |.. ..++....+.+....-..+....+..+ +..+ + . .+.
T Consensus 215 ~~~~-----~~---------------~~~n-r~~---~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~----~-~~~ 264 (428)
T PF13347_consen 215 RDSL-----RS---------------LFRN-RPF---RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G----L-ISI 264 (428)
T ss_pred ccch-----hh---------------hccc-chH---HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h----h-hHH
Confidence 0000 00 0001 111 223333333344333333333333322 2211 1 1 123
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514 256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW 335 (462)
Q Consensus 256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w 335 (462)
+..+..+..++..|+..++. +|.+ ..+-+.+|.++.+++++...+... .+.++
T Consensus 265 ~~~~~~~~~~v~~~~~~~l~----~r~g-------k~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 317 (428)
T PF13347_consen 265 FMLIFFVASIVGSPLWGRLS----KRFG-------KKKVYIIGLLLAALGFLLLFFLGP----------------GSPWL 317 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcc-------ceeehhhhHHHHHHHHHHHHHHHh----------------hhHHH
Confidence 33344555566666665543 4432 233566888888888887766531 35677
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCC
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVP-------DSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDM 408 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~ 408 (462)
++...++.++|-....+...++..+..+ ++..|.++|++.+..-+|..+++.+.+.+-.....+++. .+.
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~---~~q 394 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANA---AVQ 394 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCc---CcC
Confidence 7888899999999999999999988887 456799999999999888888888776554333222100 012
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514 409 NSSRLDKFYWLLAALVAANLFVYVVVARRYS 439 (462)
Q Consensus 409 n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~ 439 (462)
++..+...-.+.+.+.++..++-+++.++|+
T Consensus 395 ~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~ 425 (428)
T PF13347_consen 395 SASALSGIRILFSIVPAIFLLLAIIFMRFYP 425 (428)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2222333444455555555555556666664
No 67
>PRK09669 putative symporter YagG; Provisional
Probab=98.71 E-value=6.7e-06 Score=85.38 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVP-------DSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
.+.++...++.++|+....+...+++.+.++ ++..|...|++.+...+|..+|+.+.+.+
T Consensus 319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556688999999999999999999886 44567888998877777777776666543
No 68
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.70 E-value=9.8e-07 Score=88.33 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHhhhhhccchhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGV-TVVVYVQEHVSWGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~-~~~~~l~~~~g~~~~F~i 101 (462)
+.+.++++..+.+++.|...|...++..|.+++++ +.+++++...+.++|..+++ ++.+.+.+..+|++.|.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 47788889999999999999999999999987532 25678899999999999999 677777788899999998
Q ss_pred HHHHHHHHHHHHH
Q 012514 102 ITIVMAVSLLIFI 114 (462)
Q Consensus 102 ~~i~~~~~~iifl 114 (462)
.++..++..++.+
T Consensus 156 ~~~~~~~~~~~~~ 168 (379)
T TIGR00881 156 PGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHh
Confidence 7766665544433
No 69
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.70 E-value=1.5e-05 Score=82.49 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh--------ccch
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE--------HVSW 95 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~--------~~g~ 95 (462)
...+.+..++.++|.|+.-|...+++.|.+++++ +..+.++.+.+.+.|.++++.+.+.+.. .+||
T Consensus 124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 197 (432)
T PRK10406 124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence 3468888999999999999999999999987643 2567888899999999998887666542 5799
Q ss_pred hhHHHHHHHHHHHH
Q 012514 96 GAADVIITIVMAVS 109 (462)
Q Consensus 96 ~~~F~i~~i~~~~~ 109 (462)
++.|.+.++..++.
T Consensus 198 r~~F~i~~~~~ll~ 211 (432)
T PRK10406 198 RIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999866654443
No 70
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.70 E-value=8.9e-06 Score=82.49 Aligned_cols=82 Identities=10% Similarity=0.091 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+...++++.++.++|.|.. ++..+...+.++++ ++.++.+++..+.++|..+++.+++++.+++||+..|.+.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 5778999999999999974 55555567777532 1368899999999999999999999999999999999885
Q ss_pred HHHHHHHHH
Q 012514 103 TIVMAVSLL 111 (462)
Q Consensus 103 ~i~~~~~~i 111 (462)
++.-++..+
T Consensus 151 ~~l~~~~~~ 159 (368)
T TIGR00903 151 AAVAAAGII 159 (368)
T ss_pred HHHHHHHHH
Confidence 554444433
No 71
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.70 E-value=3.5e-06 Score=88.14 Aligned_cols=84 Identities=12% Similarity=-0.003 Sum_probs=66.1
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---chhhH
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV---SWGAA 98 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~---g~~~~ 98 (462)
.+.+.+++...+.++|.|..-|...+.+.+.+++++ +..+++++-.+.++|..+++.+..++.+.. +|+..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 347788888889999999999999999999998653 257788899999999999999888776543 58888
Q ss_pred HHHHHHHHHHHHH
Q 012514 99 DVIITIVMAVSLL 111 (462)
Q Consensus 99 F~i~~i~~~~~~i 111 (462)
|.+.++..++..+
T Consensus 194 f~~~g~~~~~~~i 206 (467)
T PRK09556 194 FIFPSIIALIIGF 206 (467)
T ss_pred HHHHHHHHHHHHH
Confidence 8876655544333
No 72
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.70 E-value=7.7e-07 Score=96.23 Aligned_cols=252 Identities=8% Similarity=-0.061 Sum_probs=179.0
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-hhh----
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS-WGA---- 97 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g-~~~---- 97 (462)
+.....++++.++++.++.+++.+++.+++.+..++ +++++.+++|||..+.+.+.+ +++..+..... +..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiGS-lis~~i~~~l~~~~~~fg~ 156 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAGS-LISTIITPILRGDVGCFGC 156 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccc
Confidence 355667788899999999999999999999987664 466689999999999999864 44544444333 332
Q ss_pred ---HHHHHHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccc
Q 012514 98 ---ADVIITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNL 174 (462)
Q Consensus 98 ---~F~i~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 174 (462)
-++..++.+++.++.++.+...++..++.+.+...+.+++.......+
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~----------------------------- 207 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR----------------------------- 207 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH-----------------------------
Confidence 233667777777788888877676666554443334444433322210
Q ss_pred hhhhHhhhhcCCCCCCCCCCCcccc--cccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeC
Q 012514 175 EFLDKAAILEDYETPVDQQSPWRIA--NVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIP 252 (462)
Q Consensus 175 ~~ld~a~i~~~~~~~~~~~~~~~~~--~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip 252 (462)
.+... .... ....|-.+ ...++++++...+++.++...+.+|+.+.|.....+.+...+++..+ .+...
T Consensus 208 ---~~~~~-~~~~----~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g~ 278 (654)
T TIGR00926 208 ---KRFST-RSEH----WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGGF 278 (654)
T ss_pred ---Hhhcc-CCcc----cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCCE
Confidence 00000 0000 00111111 22235678999999999999999999999999989889899998755 55555
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514 253 PASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGV 319 (462)
Q Consensus 253 ~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~ 319 (462)
+...+.++++-.+++.++...+.+++.++..+ .-.+++++.-+.+.++++++..++.+......
T Consensus 279 ~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~---~~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 279 EIQPDQMQVVNPLLILIFVPIFDYIVYPAIAK---CGTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred ecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHh---cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999988999998743 32467889999999999999998888765544
No 73
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.69 E-value=4.6e-06 Score=85.14 Aligned_cols=76 Identities=7% Similarity=-0.036 Sum_probs=55.1
Q ss_pred HHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHH
Q 012514 28 FLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMA 107 (462)
Q Consensus 28 ~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~ 107 (462)
.++.++.+++.+...|...++..|.-+ + +...|++.....|+|..+|+.+++.+.+ .+|++.|.+.++..+
T Consensus 103 ~~~~~~~g~~~~~~~~~~~~~~~~~~~----~----~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~ 173 (396)
T TIGR00882 103 IVGGLYLGFVFSAGAGAIEAYIEKVSR----N----SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFAL 173 (396)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHhhh----h----cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHH
Confidence 344556677778778888777655311 1 1246778889999999999999998865 699999998777666
Q ss_pred HHHHH
Q 012514 108 VSLLI 112 (462)
Q Consensus 108 ~~~ii 112 (462)
+..++
T Consensus 174 ~~~~~ 178 (396)
T TIGR00882 174 ILMLL 178 (396)
T ss_pred HHHHH
Confidence 65543
No 74
>PRK03699 putative transporter; Provisional
Probab=98.69 E-value=1.6e-05 Score=81.12 Aligned_cols=84 Identities=11% Similarity=0.178 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-hccchhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ-EHVSWGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~-~~~g~~~~F~i 101 (462)
+.+.++++..+.+++.|...+...+.+.+.+++++ +....+..+...++|..++|.+.+++. +..||++.|.+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 46778888889999999999999999999986532 245677778888999999999888764 45799999998
Q ss_pred HHHHHHHHHHH
Q 012514 102 ITIVMAVSLLI 112 (462)
Q Consensus 102 ~~i~~~~~~ii 112 (462)
.++..++..+.
T Consensus 168 ~~~~~~~~~~~ 178 (394)
T PRK03699 168 IGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHH
Confidence 76666555443
No 75
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.68 E-value=9.3e-07 Score=92.57 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Q 012514 25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITI 104 (462)
Q Consensus 25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i 104 (462)
......+.+++++.+.......++..|+.+ ++++ ......++.|.+.++|.++|+.++|++.+.++|+..|.+.++
T Consensus 121 ~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~ 196 (468)
T TIGR00788 121 KVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAA 196 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 334446788999999999999999999988 3322 224577899999999999999999999999999999999887
Q ss_pred HHHHHHHHHHH
Q 012514 105 VMAVSLLIFII 115 (462)
Q Consensus 105 ~~~~~~iifl~ 115 (462)
..++..+...+
T Consensus 197 l~ll~~~~~~~ 207 (468)
T TIGR00788 197 LLLLQLFVSNL 207 (468)
T ss_pred HHHHHHHHHHh
Confidence 77777444333
No 76
>PRK09952 shikimate transporter; Provisional
Probab=98.64 E-value=2.9e-05 Score=80.56 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------hccchhh
Q 012514 26 VFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ--------EHVSWGA 97 (462)
Q Consensus 26 ~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~--------~~~g~~~ 97 (462)
.+.+...+.++|.|+.-|...++..+.+++++ +....+....+.++|.+++..+..++. +++||+.
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~ 200 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence 57778889999999999999999999887643 245677788888899888877766654 2579999
Q ss_pred HHHHHHHHHHH
Q 012514 98 ADVIITIVMAV 108 (462)
Q Consensus 98 ~F~i~~i~~~~ 108 (462)
.|.+.++..++
T Consensus 201 ~f~~~~~~~l~ 211 (438)
T PRK09952 201 PFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHH
Confidence 99987665433
No 77
>PRK15075 citrate-proton symporter; Provisional
Probab=98.64 E-value=1.4e-05 Score=82.78 Aligned_cols=73 Identities=11% Similarity=0.177 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------hccchhh
Q 012514 26 VFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ--------EHVSWGA 97 (462)
Q Consensus 26 ~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~--------~~~g~~~ 97 (462)
.++++.++.++|.|+.-|+..++..|.+++++ +.++.+++..+.|+|..+++.+++.+. +++||++
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 46788889999999999999999999997643 256778888888888777777766652 4689999
Q ss_pred HHHHHHH
Q 012514 98 ADVIITI 104 (462)
Q Consensus 98 ~F~i~~i 104 (462)
.|.+.++
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9987543
No 78
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.63 E-value=1.7e-05 Score=83.84 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh------------
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE------------ 91 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~------------ 91 (462)
...++++..+.++|.|+.-|....++.+.++++. +.++.++.+...++|.++++.+..++..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 188 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE 188 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 5678999999999999999999999999987543 2678899999999999998888765431
Q ss_pred -----------ccchhhHHHHHHHHHHHHHH
Q 012514 92 -----------HVSWGAADVIITIVMAVSLL 111 (462)
Q Consensus 92 -----------~~g~~~~F~i~~i~~~~~~i 111 (462)
+.+|++.|.+.++..++..+
T Consensus 189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 189 ASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred ccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 24799999877665555443
No 79
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.63 E-value=5.3e-05 Score=76.43 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=75.8
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI 101 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i 101 (462)
.+.+.+.++.++.++..|.|-+...+..+|..++++ +.++..+.+.+.-++-.+|.=++.++.+.+||+..|++
T Consensus 99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ 172 (394)
T COG2814 99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence 348899999999999999999999999999998754 26889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHH
Q 012514 102 ITIVMAVSLLIFII 115 (462)
Q Consensus 102 ~~i~~~~~~iifl~ 115 (462)
-++.-+++++..+.
T Consensus 173 ia~l~ll~~~~~~~ 186 (394)
T COG2814 173 IAVLALLALLLLWK 186 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666554443
No 80
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.62 E-value=4.7e-05 Score=77.96 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHhhhhhccchhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGL-LLGVTVVVYVQEHVSWGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~-~i~~~~~~~l~~~~g~~~~F~i 101 (462)
+...+++...+.++|.+..-+...+.+.+.+++++ +.++.+++..+.++|. .+++.+++++.+..||...++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 35666777777888888877777777777765432 3678999999999996 6899999998888886655554
Q ss_pred HHH
Q 012514 102 ITI 104 (462)
Q Consensus 102 ~~i 104 (462)
...
T Consensus 178 ~~~ 180 (402)
T TIGR00897 178 ALA 180 (402)
T ss_pred HHH
Confidence 433
No 81
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.62 E-value=7.7e-08 Score=96.96 Aligned_cols=92 Identities=21% Similarity=0.183 Sum_probs=78.6
Q ss_pred CCCcchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-hh
Q 012514 18 EPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS-WG 96 (462)
Q Consensus 18 ~~~~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g-~~ 96 (462)
.....+.+.+.+...+.++|-+.+.|..+++++|.++++. |++.|.||||++++|+.+|...+.++.+..+ |+
T Consensus 115 ~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr 188 (493)
T KOG1330|consen 115 SGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR 188 (493)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence 3334568999999999999999999999999999998754 3689999999999999999999999987766 99
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012514 97 AADVIITIVMAVSLLIFII 115 (462)
Q Consensus 97 ~~F~i~~i~~~~~~iifl~ 115 (462)
++|.+.++.+++..++..+
T Consensus 189 ~af~~~avl~vi~~~L~~~ 207 (493)
T KOG1330|consen 189 WAFRGSAVLGVIVGLLVFL 207 (493)
T ss_pred EEEEeehHHHHHHHHHHHh
Confidence 9999988888777664433
No 82
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.61 E-value=8.7e-06 Score=85.48 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh---------cc
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE---------HV 93 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~---------~~ 93 (462)
+...++++.++.++|.+..-+ ....+.+.++++. +..+.++.+...|+|+.+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 456677777888888887543 4456778776432 3578888888888888888777765532 25
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 012514 94 SWGAADVIITIVMAVSLLI 112 (462)
Q Consensus 94 g~~~~F~i~~i~~~~~~ii 112 (462)
||++.|.+.++..++..+.
T Consensus 196 gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8999999877766655443
No 83
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.61 E-value=5.5e-06 Score=86.27 Aligned_cols=304 Identities=14% Similarity=0.232 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc-cchhhHHHHHH
Q 012514 25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH-VSWGAADVIIT 103 (462)
Q Consensus 25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i~~ 103 (462)
+.+.+..++.|++.|...|++..+.++-.+.++ +.++.++.|-+..+|.+++..++|++-+. .||+..|.+.+
T Consensus 129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g 202 (466)
T KOG2532|consen 129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG 202 (466)
T ss_pred hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence 356788899999999999999999999877533 26899999999999999999999999888 99999999877
Q ss_pred HHHHHHHHHHHHcccceeecCCCCCCchh--HHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhh
Q 012514 104 IVMAVSLLIFIIGRPFYRYRVPKGSPLTP--MLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAA 181 (462)
Q Consensus 104 i~~~~~~iifl~~~~~~~~~~p~~~~~~~--~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~ 181 (462)
+.-++-.+++... +.+ .|++.|.-. -.+-+. +++... +.
T Consensus 203 ~~g~i~~~~w~~~---~~d-~P~~h~~is~~El~~I~---~~k~~~----------------------~~---------- 243 (466)
T KOG2532|consen 203 IVGLIWFILWFLF---YSD-SPSKHPNISEKELKYIE---KGKSEA----------------------HV---------- 243 (466)
T ss_pred HHHHHHHHHHHHH---hcC-CcccCCCCCHHHHHHHH---hccccc----------------------cc----------
Confidence 7666666554432 222 343322110 000000 000000 00
Q ss_pred hhcCCCCCCCCCCCcccccccchHHHHHHHh---HHHHHHhhhh-hHhhh--cchhHHHHHHHHHhccCCCCCeeeC-cc
Q 012514 182 ILEDYETPVDQQSPWRIANVTKVEEMKLVLN---VIPVWLASLP-FGISV--AQSTTFFIKQAATMNREIGNGFLIP-PA 254 (462)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~---~l~l~~~~i~-f~~~~--~Q~~s~~~~qa~~~~~~~g~g~~ip-~~ 254 (462)
+ .....||+ ++++ +..+++.... .|..+ .|... ..++. +. ++.+- .+
T Consensus 244 ----~---~~~~vP~~-----------~i~ts~~vwai~~~~f~~~~~~~~l~~y~P------tY~~~-VL-~f~v~~~G 297 (466)
T KOG2532|consen 244 ----K---KKPPVPYK-----------AILTSPPVWAIWISAFGGNWGFYLLLTYLP------TYLKE-VL-GFDVRETG 297 (466)
T ss_pred ----C---CCCCCCHH-----------HHHcCHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHH-Hh-CCChhhhh
Confidence 0 00123443 1111 1222222211 11111 11111 23331 11 23232 34
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhh--HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIG--IGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS 332 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~--iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s 332 (462)
++.++..+...+...+...+-+++.+| ... .+..+|+. ++....+++++.+++... + +
T Consensus 298 ~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~-------~---------~ 357 (466)
T KOG2532|consen 298 FLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD-------E---------H 357 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC-------C---------c
Confidence 566666666666666666665555444 221 23455654 445555555555444311 0 1
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhh--h-cCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCc
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYD--Q-VPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMN 409 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~--~-aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n 409 (462)
. |. +.++++++..+..-...-+.-. . || +.-+..||+......++.++++.+++.+-+ |+ +
T Consensus 358 ~-~~--a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-----------~~-t 421 (466)
T KOG2532|consen 358 R-LL--AVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-----------DN-T 421 (466)
T ss_pred c-hH--HHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-----------CC-C
Confidence 1 22 3355566555555444443333 3 55 667899999999999999999998875431 11 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhh
Q 012514 410 SSRLDKFYWLLAALVAANLFVYVVVA 435 (462)
Q Consensus 410 ~~~l~~~f~~la~l~~~~~v~~~~~~ 435 (462)
...=...|++.+++.++..++|.+.+
T Consensus 422 ~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 422 REEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEee
Confidence 11114578888888888888888875
No 84
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.59 E-value=1.6e-05 Score=83.36 Aligned_cols=113 Identities=11% Similarity=0.158 Sum_probs=69.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514 256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW 335 (462)
Q Consensus 256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w 335 (462)
+..++.+..++..|+..++. +|.+ ..+.+.+|.++.+++.+.....-. . .+.+.++
T Consensus 271 ~~~~~~i~~ii~~~~~~~l~----~r~g-------kk~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~ 326 (473)
T PRK10429 271 YLSYAGAANLVTLILFPRLV----KSLS-------RRILWAGASIFPVLSCGVLLLMGL-----A--------APHNALL 326 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcC-------cHHHHHHHHHHHHHHHHHHHHHhc-----c--------CchhHHH
Confidence 34444555566666665433 3432 223344566655555544332210 0 0123444
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVP-------DSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++...++.++++....+...+++.+.+| ++..|.+.|++.+..-+|..+|+.+.+.+
T Consensus 327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999999987 45567799999988877777776666544
No 85
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.57 E-value=1.2e-05 Score=83.37 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh-hhhccchhhHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVY-VQEHVSWGAADVII 102 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~-l~~~~g~~~~F~i~ 102 (462)
...+++...+.+++.|...+.....+.|.+++++ +..++++++.+.++|..+++.+.+. +..+.+|+.+|.+.
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~ 191 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP 191 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5566777888899999999999999999887543 2578999999999999998877765 44457999999997
Q ss_pred HHHHHHHHHH
Q 012514 103 TIVMAVSLLI 112 (462)
Q Consensus 103 ~i~~~~~~ii 112 (462)
++..++..+.
T Consensus 192 ~~~~~i~~~~ 201 (438)
T TIGR00712 192 AICAIIVALF 201 (438)
T ss_pred HHHHHHHHHH
Confidence 7776665543
No 86
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.54 E-value=2.9e-05 Score=77.83 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc--chhhHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV--SWGAADV 100 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~--g~~~~F~ 100 (462)
+.+.++++..+.++|.|...+...+...|.+++ + +.++.+++..+.++|..+++.+++++.++. +|+..|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 356777888899999999888888888877643 1 256889999999999999999999887664 3888887
Q ss_pred HHHHHHHHH
Q 012514 101 IITIVMAVS 109 (462)
Q Consensus 101 i~~i~~~~~ 109 (462)
+.++..++.
T Consensus 159 ~~~~~~~~~ 167 (355)
T TIGR00896 159 WWALPALLA 167 (355)
T ss_pred HHHHHHHHH
Confidence 755544443
No 87
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.51 E-value=4e-05 Score=75.84 Aligned_cols=86 Identities=13% Similarity=0.009 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc---------
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH--------- 92 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~--------- 92 (462)
.+.+.+.+++.+++.|.+...+..++++++.-++++. .+..|+.-....+|+++||++.+.+..+
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~------~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETA------ASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchH------HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 4588999999999999999999999999999765442 3568888899999999999999976532
Q ss_pred -------cchhhHHHHHHHHHHHHHHHH
Q 012514 93 -------VSWGAADVIITIVMAVSLLIF 113 (462)
Q Consensus 93 -------~g~~~~F~i~~i~~~~~~iif 113 (462)
..|++.|.+-+...++..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888885444433333333
No 88
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.46 E-value=0.00012 Score=74.59 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=50.3
Q ss_pred HHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Q 012514 34 ISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIF 113 (462)
Q Consensus 34 i~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~~~~iif 113 (462)
.++......+...++..+..++ + +...+-....++..+|.++|+.+.+++.+++||+..|.+.++..++..+..
T Consensus 107 ~~~~~a~~d~~~d~~~~~~~~~---~---~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~ 180 (390)
T TIGR02718 107 ASLASATQDIATDGMAAEHFNG---R---TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCV 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCCH---h---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555454443221 1 123445566677789999999999999999999999999887777666554
Q ss_pred HH
Q 012514 114 II 115 (462)
Q Consensus 114 l~ 115 (462)
+.
T Consensus 181 ~~ 182 (390)
T TIGR02718 181 LW 182 (390)
T ss_pred HH
Confidence 33
No 89
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.38 E-value=0.00014 Score=74.83 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh------ccchh
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE------HVSWG 96 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~------~~g~~ 96 (462)
+...++++..+.++|.|..-|...++..+.+++++ +..+.+++..+.++|..+++.+++++.+ ..||+
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 36778899999999999999999888998886422 2578889999999999999999998863 36999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 012514 97 AADVIITIVMAVSLLIF 113 (462)
Q Consensus 97 ~~F~i~~i~~~~~~iif 113 (462)
+.|.+.++..++..++.
T Consensus 169 ~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999766665544433
No 90
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.35 E-value=6.9e-05 Score=75.28 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--hhhhhccchhhHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVV--VYVQEHVSWGAADV 100 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~--~~l~~~~g~~~~F~ 100 (462)
+.+.+.+-..+.+.-.|.=-|...-.++.-|++++ |.+..++.-.+-|+|..+.+.++ +++..+++|+.+|.
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 46667777777888888888999999999997644 36788899999999999999999 99999999999999
Q ss_pred HHHHHHH-HHHHHHHHccc
Q 012514 101 IITIVMA-VSLLIFIIGRP 118 (462)
Q Consensus 101 i~~i~~~-~~~iifl~~~~ 118 (462)
++++..+ ++++.+..+|.
T Consensus 190 ~pgiiaiival~~~~~~rd 208 (448)
T COG2271 190 FPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 9876654 55555555433
No 91
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.35 E-value=0.00058 Score=68.74 Aligned_cols=264 Identities=17% Similarity=0.172 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH-
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI- 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i- 101 (462)
......++.+++++|.+.-.....++.+|.-+|++ |.+.-++-|...-+|..++.++.+.+-+.++..-..-+
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~ 161 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI 161 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 34455666677888888889999999999976543 25788999999999999999999988777765333222
Q ss_pred ---HHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhh
Q 012514 102 ---ITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLD 178 (462)
Q Consensus 102 ---~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld 178 (462)
+.+.+.+.++-.+--.++..+.. ..+ +.+...+.+
T Consensus 162 ~~~a~i~~~l~~ia~wg~E~r~~~~~----------------------~~~--------------------~~~~~~f~~ 199 (403)
T PF03209_consen 162 QGVALIALLLNLIALWGQEPRRSRRA----------------------AAA--------------------ERPRPPFRE 199 (403)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcccc----------------------cCC--------------------CCCCccHHH
Confidence 22222222222221111111000 000 000011111
Q ss_pred HhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCccccch
Q 012514 179 KAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPASVFG 258 (462)
Q Consensus 179 ~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~~~~~ 258 (462)
...... .+| +.++++. -+++..+ .+..|..-+...-|.-|-++++.-..
T Consensus 200 a~~~~~--------~~~----------~a~~f~~--fl~l~t~-----------a~~~QD~iLEPygg~Vfgmsv~eTT~ 248 (403)
T PF03209_consen 200 AWRQVW--------ASP----------QARRFFV--FLFLGTL-----------AFFMQDVILEPYGGEVFGMSVGETTR 248 (403)
T ss_pred HHHHHH--------hCC----------ChhHHHH--HHHHHHH-----------HHHhhHHHcCCchhHHcCCCHHHHHH
Confidence 110000 011 2222211 1111111 12223222222101012255554444
Q ss_pred hhH---HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514 259 LTA---VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW 335 (462)
Q Consensus 259 ~n~---l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w 335 (462)
+|. .-.++...+-.++.. |. ..+.+.-.+|....++++....+... .-+.+-
T Consensus 249 Lta~~~~G~L~G~~~~g~~l~----~~------~~~~~~a~~G~~~~~~~f~lii~a~~---------------~~~~~~ 303 (403)
T PF03209_consen 249 LTAFWGGGTLLGMLLAGFLLS----RR------LGKKRTAALGCLLGALAFALIILAGP---------------LGSPWL 303 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CC------CCchHHHHHHHHHHHHHHHHHHHHHh---------------cccchH
Confidence 444 334444444444332 21 12333334777777777765544321 123555
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
+.+..+++|+|--+.....++..-+.++++..|..||+|-..++++.-+|.++.+
T Consensus 304 ~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG 358 (403)
T PF03209_consen 304 FRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG 358 (403)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999999988776666665554
No 92
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.26 E-value=0.00012 Score=79.46 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---------
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV--------- 93 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~--------- 93 (462)
....++++.++.++|.|...+...+++.|.+++++ +..++++++.+.++|..+|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 35678899999999999999999999999987654 257899999999999999999999887543
Q ss_pred -------------chhhHHHHHHHHHHHHHHHHHH
Q 012514 94 -------------SWGAADVIITIVMAVSLLIFII 115 (462)
Q Consensus 94 -------------g~~~~F~i~~i~~~~~~iifl~ 115 (462)
+|+.+|.+.++..++..+.++.
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3888899877776665554444
No 93
>PRK11462 putative transporter; Provisional
Probab=98.19 E-value=0.0011 Score=69.23 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc-------cchh
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH-------VSWG 96 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~-------~g~~ 96 (462)
...+++...+..++.-++.-...++.++.-++ ++|| .+..++.-.+.++|.++++++...+.+. .+|.
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~eR---t~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITND--PTQR---ISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 33444455566788888888889999988755 4433 5788999999999988877775443332 2455
Q ss_pred hHHHHHHHHHHHHHH
Q 012514 97 AADVIITIVMAVSLL 111 (462)
Q Consensus 97 ~~F~i~~i~~~~~~i 111 (462)
....+.++..+++..
T Consensus 184 ~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 184 GGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544444444443
No 94
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.15 E-value=0.00068 Score=69.78 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=64.1
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh----------
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE---------- 91 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~---------- 91 (462)
.+.+.+.++..+.++|.|...+..++++.+..+++++ .+..++.....++|..+|+.+++.+..
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTA------TRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 3477888899999999999999999999887654321 345788889999999999999887732
Q ss_pred ----------------ccchhhHHHHHHHHHHHHHH
Q 012514 92 ----------------HVSWGAADVIITIVMAVSLL 111 (462)
Q Consensus 92 ----------------~~g~~~~F~i~~i~~~~~~i 111 (462)
..+|++.|.+.++..++..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24699999876665444433
No 95
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.14 E-value=0.00037 Score=70.99 Aligned_cols=98 Identities=8% Similarity=0.062 Sum_probs=66.9
Q ss_pred cchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHH-HHHHhHHHHHHHHHHhhcccccccCCCccccCCCc
Q 012514 331 MSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFY-LSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMN 409 (462)
Q Consensus 331 ~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~-~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n 409 (462)
.+++++++.=.+.++---+.-....-++++..|+++.+....+. .++.++|..+.+.+.+. +.|+++
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~------------lyd~~G 377 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY------------LYDRIG 377 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH------------HHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh------------hHhhcC
Confidence 35667776668888888899999999999999999998888775 47778888877766653 333332
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 012514 410 SSRLDKFYWLLAALVAANLFVYVVVARRYSYKNV 443 (462)
Q Consensus 410 ~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~ 443 (462)
....|+.++.++++.+++-++.-++=++..+
T Consensus 378 ---~~~tylimg~iv~~~~li~~f~l~~~~~~~~ 408 (412)
T PF01306_consen 378 ---FQHTYLIMGLIVLPFTLISAFTLKKDKKQIV 408 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHS--SSSTTC
T ss_pred ---cHHHHHHHHHHHHHHHHHheeeecCCCcccc
Confidence 1234777888777766666665554444333
No 96
>PRK10133 L-fucose transporter; Provisional
Probab=98.13 E-value=0.001 Score=69.01 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ 90 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~ 90 (462)
.+...+++++++.++|.|...+..++++.|..+++. + ....+++.....+|..+|+.+++.+.
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~----~--~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----G--HFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh----H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888999999999999999999999998643221 1 23467778888899999988876543
No 97
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.09 E-value=9.7e-06 Score=82.08 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=105.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
.+|..-.+.-+++.|+.+.+- .|+ ++.+-|++|.++-.++.+..++.. -+
T Consensus 72 ll~~vf~v~~~i~sPl~gyLa----dry-------NR~~v~~vG~~iW~~Av~~~~fs~-------------------~F 121 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLA----DRY-------NRKRVIAVGIFIWTLAVFASGFSN-------------------HF 121 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHH----hhc-------CcceEEeeHHHHHHHHHHHHHHHH-------------------HH
Confidence 455555556667788888743 332 466778899999998888777653 34
Q ss_pred hHH-HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514 335 WLA-PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL 413 (462)
Q Consensus 335 wli-~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l 413 (462)
||+ ..-.+.|+||...+|...+++.+..|+..||+++|+++++.-+|+.+|.+..+.+...+. .|
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~----~W---------- 187 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF----WW---------- 187 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc----ce----------
Confidence 655 456899999999999999999999999999999999999999999998766665543221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514 414 DKFYWLLAALVAANLFVYVVVARRYSYK 441 (462)
Q Consensus 414 ~~~f~~la~l~~~~~v~~~~~~~~~~~~ 441 (462)
.+=|+.-++++++.+++.+++.+.=+|+
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 1125667788888777666666555543
No 98
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.09 E-value=0.0013 Score=67.44 Aligned_cols=86 Identities=13% Similarity=0.281 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHH-HHhHHHHHHHHHHhhcccccccCCCccccCCCccch---hHH
Q 012514 340 SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLS-VIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSR---LDK 415 (462)
Q Consensus 340 ~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l-~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~---l~~ 415 (462)
-.++|+.-.+..+++..++.+.+|++.|+.+||++.. ..++|..+|+.+.+.+ .|+.+... ...
T Consensus 308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l------------~~~~g~~~~~~~~~ 375 (400)
T PF03825_consen 308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL------------YDAFGARGMFDWSA 375 (400)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH------------HHHhcchhhhhHHH
Confidence 3579999999999999999999999999999999875 5688888887776633 32222211 224
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 012514 416 FYWLLAALVAANLFVYVVVARR 437 (462)
Q Consensus 416 ~f~~la~l~~~~~v~~~~~~~~ 437 (462)
+|.+.++++++..+++++..|+
T Consensus 376 ~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 376 VFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 5666777777777777777543
No 99
>PRK03545 putative arabinose transporter; Provisional
Probab=98.03 E-value=0.00014 Score=74.04 Aligned_cols=109 Identities=13% Similarity=-0.003 Sum_probs=80.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..+...+...+..++...+. +|+ +..+-+.++.++.+++.+..++. .+.+
T Consensus 48 ~~~~~~~~~~~~~~~~~g~l~----dr~-------g~r~~~~~~~~~~~~~~~~~~~~------------------~~~~ 98 (390)
T PRK03545 48 LMLTIYAWVVALMSLPLMLLT----SNV-------ERRKLLIGLFVLFIASHVLSALA------------------WNFT 98 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----cCC-------ChHHHHHHHHHHHHHHHHHHHHh------------------ccHH
Confidence 344455555556666665543 333 23445667888888887766543 2455
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++...++.++++....|....++.+..|++.|+.++|++....++|..+++.+...+
T Consensus 99 ~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l 156 (390)
T PRK03545 99 VLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI 156 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6666778999999999999999999999999999999999999999999988776643
No 100
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.98 E-value=0.00027 Score=72.70 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=82.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..+...+...+..++..++.++..+| +-+.+++++.+++.+..++. .+.+
T Consensus 47 ~~~s~~~~~~~~~~~~~g~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~~ 97 (412)
T TIGR02332 47 LAATLFYAAYVICGIPSNIMLAIIGAR-----------RWIAGIMVLWGIASTATMFA------------------TGPE 97 (412)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHh------------------cCHH
Confidence 344555555666667766655433322 23567787888777776643 2355
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++...++.|++|....|.....+.+..|++.||..+|++....++|..+++.+...+
T Consensus 98 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 155 (412)
T TIGR02332 98 SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI 155 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777889999999999999999999999999999999999999999999998876643
No 101
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=4.6e-05 Score=75.87 Aligned_cols=146 Identities=13% Similarity=0.139 Sum_probs=115.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++.+.-.+.-++..|+++.+..++. ...-|.+|++++..+.++.++.+. +
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iG-----------y~ipm~~Gl~vmf~sTilFafg~s------------------y 159 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIG-----------YKIPMVAGLFVMFLSTILFAFGNS------------------Y 159 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhc-----------cccHHHHHHHHHHHHHHHHHHcch------------------h
Confidence 45666667777777788877665333 333588999999999999888643 3
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh-hhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccch
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSM-RSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSR 412 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~-~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~ 412 (462)
+.++.+-.++|+|..+.+..|++++.+.-|++. ||..||+-.-..++|..+|+.+.+.++..-.+ ..|
T Consensus 160 ~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk----~aP------- 228 (464)
T KOG3764|consen 160 PMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK----SAP------- 228 (464)
T ss_pred HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC----cCc-------
Confidence 456678899999999999999999999999996 69999999999999999999888766543221 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 012514 413 LDKFYWLLAALVAANLFVYVVVARRYSYKNV 443 (462)
Q Consensus 413 l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~ 443 (462)
|.+++.++++...+-+++.+.++..++
T Consensus 229 ----FlVL~~v~Lld~~L~l~vi~p~~~~~~ 255 (464)
T KOG3764|consen 229 ----FLVLAIVLLLDGALQLLVIEPTEMDPD 255 (464)
T ss_pred ----HHHHHHHHHHHHHHHHheeCccccCcc
Confidence 899999999999999998888777654
No 102
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.94 E-value=0.00033 Score=70.16 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh----------c
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE----------H 92 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~----------~ 92 (462)
+.+.++++.++.+++.+.+ +...++++|.+++++ +..+.+++....|+|..+++.+.+.+.. +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4677888888999997766 456788888876432 2567888888889999888888776654 2
Q ss_pred cchhhHH-HHHHHHHH
Q 012514 93 VSWGAAD-VIITIVMA 107 (462)
Q Consensus 93 ~g~~~~F-~i~~i~~~ 107 (462)
.+|++.| .+.++..+
T Consensus 163 ~~w~~~~~~~~~~~~~ 178 (366)
T TIGR00886 163 LAWGWAFVIVPAGILL 178 (366)
T ss_pred ccccchhHHHHHHHHH
Confidence 4899998 44343333
No 103
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.93 E-value=0.00032 Score=69.48 Aligned_cols=133 Identities=15% Similarity=0.162 Sum_probs=96.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++.+...+...+..|+...+.++..+| +-+.+|.++.+++.+...+. .+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~------------------~~~ 85 (352)
T PF07690_consen 35 GLLFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFA------------------SNF 85 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHH------------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhh------------------hhH
Confidence 3566666777778888888766543332 34667888888885544432 123
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL 413 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l 413 (462)
++++...++.++++....+.....+.+..|++.|+..+|++....++|..+++.+.+.+.. ..+ .
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~------------~~~---~ 150 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS------------YFG---W 150 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HCH---H
T ss_pred HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh------------ccc---c
Confidence 4667788999999999999999999999999999999999999999999999888774431 111 1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012514 414 DKFYWLLAALVAANLFV 430 (462)
Q Consensus 414 ~~~f~~la~l~~~~~v~ 430 (462)
...|+..+++.++..++
T Consensus 151 ~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 151 RWAFLISAILSLIAAIL 167 (352)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhh
Confidence 22366677777666553
No 104
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.91 E-value=0.00035 Score=70.32 Aligned_cols=110 Identities=14% Similarity=0.069 Sum_probs=82.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+.+.+..++..|+..++.+ |++ ..+-+.+|.++.+++.+..+.. .+.
T Consensus 43 g~~~~~~~~~~~~~~~~~g~l~d----~~g-------~r~~~~~~~~~~~~~~~~~~~~------------------~~~ 93 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGPLSD----RYG-------RRPVLLLGLFIFALSSLGLALS------------------NNI 93 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH----hcC-------ChHHHHHHHHHHHHHHHHHHHH------------------ccH
Confidence 34556666666777777766543 321 2234557777777777765542 234
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+.+.+
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 152 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI 152 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666788999999999999999999999999999999999999999988888776643
No 105
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.004 Score=64.32 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=48.6
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ 90 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~ 90 (462)
.+....++-..+..++.-.+.-...++.+..-++ ++|| .+..+|..+..|+|.++...+.+.+.
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~ER---~~l~s~R~~~~~~g~~l~~~~~~plv 173 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQER---ASLTSWRMVFASLGGLLVAVLFPPLV 173 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666678888888888889999988754 5544 57889999999999887777766554
No 106
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.87 E-value=0.00058 Score=70.82 Aligned_cols=89 Identities=9% Similarity=0.091 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.....+.+.+..+|.....-...++..+.-++++.+ ....-++.|.+..+|++++..+.|++.++.+++..|.++
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 3455566777788999998889999998887655432 256678999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHH
Q 012514 103 TIVMAVSLLIFII 115 (462)
Q Consensus 103 ~i~~~~~~iifl~ 115 (462)
++.-.+.++..+.
T Consensus 161 ~~~~~l~~~~~~~ 173 (433)
T PF03092_consen 161 AALPLLMLIVALF 173 (433)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666554333
No 107
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.87 E-value=0.00025 Score=70.99 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=83.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+...+..++..|+..++.++..+| +-+.++.++.+++.+..++. .+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~ 82 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWLLDRFGAR-----------KTLAVFIVIWGVFTGLQAFA------------------GAY 82 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCcc-----------eeeHHHHHHHHHHHHHHHHH------------------cCH
Confidence 4566777777778888877765433222 23456777777666665542 245
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++++...++.++|.....+.....+.+..|++.|+..+|++.....+|..+++.+...
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 140 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW 140 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 5666778999999999999999999999999999999999999999999999887764
No 108
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.86 E-value=0.00057 Score=71.37 Aligned_cols=110 Identities=13% Similarity=0.032 Sum_probs=84.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+...+..++..|+..++.++..+| +-+.+|.++.+++.+..+.. .+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~ 90 (485)
T TIGR00711 40 QWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVA------------------PNL 90 (485)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCc------------------CCH
Confidence 4666777777788888887765443322 23557777777776655432 245
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++++...++.++|.....|.....+.+..|++.|+.++|++.....+|..+|+.+.+.+
T Consensus 91 ~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 149 (485)
T TIGR00711 91 ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWI 149 (485)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence 56677889999999999999999999999999999999999999999999988776643
No 109
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.86 E-value=0.0015 Score=69.02 Aligned_cols=110 Identities=8% Similarity=0.067 Sum_probs=83.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
.|..+...+...+..|+.+++.++..+| +-+.+|.++.+++.+..+.. -+.
T Consensus 44 ~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a------------------~~~ 94 (495)
T PRK14995 44 LWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFS------------------PTA 94 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHc------------------CCH
Confidence 4566666777777888887766544333 34667888888877776642 245
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhh-cCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQ-VPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~-aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+.+.+
T Consensus 95 ~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l 154 (495)
T PRK14995 95 SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL 154 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667778999999999999888877666 5789999999999999999999998887744
No 110
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.84 E-value=0.0012 Score=67.20 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=79.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++.+...+..++..++..++.++.. +.+-+.++.++.+++.+...+. .+.
T Consensus 53 g~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~------------------~~~ 103 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGRLADRIG-----------RKRILIVSVALFGLFSLATAQA------------------WDF 103 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-----------CchhHHHHHHHHHHHHHHHHHh------------------ccH
Confidence 34556666667777777776554332 2233556666666665544432 245
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
++++...++.+++.....|...+.+.+..|++.|+..+|++.....+|..+++.+..
T Consensus 104 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 160 (406)
T PRK11551 104 PSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV 160 (406)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677899999999999999999999999999999999999999999999877654
No 111
>PRK10054 putative transporter; Provisional
Probab=97.81 E-value=0.00076 Score=68.98 Aligned_cols=110 Identities=8% Similarity=0.030 Sum_probs=78.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..++..+..++..|+..++.++..+ .+-+.+|.++.+++++..++.+ +.
T Consensus 46 g~~~s~~~~~~~~~~~~~G~l~Dr~g~-----------k~~~~~~~~~~~~~~~~~~~~~------------------~~ 96 (395)
T PRK10054 46 GYAMTIALTIGVVFSLGFGILADKFDK-----------KRYMLLAITAFASGFIAIPLVN------------------NV 96 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhHHHHHHHHHHHHHHHHHHh------------------HH
Confidence 345566666677777888776543322 2245577777777777665532 22
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+..+....+.+.+.....|.....+.+..|++.|+..+|+......+|..+|+.+.+.+
T Consensus 97 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l 155 (395)
T PRK10054 97 TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL 155 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333456777777777888899999999999999999999999999999888877754
No 112
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.80 E-value=0.00092 Score=68.34 Aligned_cols=109 Identities=11% Similarity=0.041 Sum_probs=83.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..+.+.+...+..|+...+.+ |. .+.+-+.++.++.+++.+...+. .+.+
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~D----r~-------grr~~~~~~~~~~~~~~~~~~~~------------------~~~~ 109 (394)
T PRK10213 59 QSVTVTAFVAMFASLFITQTIQ----AT-------DRRYVVILFAVLLTLSCLLVSFA------------------NSFS 109 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----cc-------CcHHHHHHHHHHHHHHHHHHHHH------------------ChHH
Confidence 3445667777777777776543 32 23345667888888777665442 2456
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++...++.+++.....|.....+.+..|++.|+..+|+.....++|..+++.+...+
T Consensus 110 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l 167 (394)
T PRK10213 110 LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFL 167 (394)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666778999999999999999999999999999999999999999999988887644
No 113
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.77 E-value=0.0011 Score=68.77 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=79.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
++.+...+...+..|+..++.+ |.+ +.+-+.+++++.+++.+..+... +.+
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l~d----r~g-------~r~~~~~~~~~~~~~~~~~~~~~------------------~~~ 112 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIVSD----RSN-------ARYFMGIGLIATGIINILFGFSS------------------SLW 112 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHh----hcC-------CchhHHHHHHHHHHHHHHHHHHh------------------HHH
Confidence 3445555666677777766553 332 22345678888777776655432 234
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
.++...++.++++....+.....+.+..|++.||..+|++....++|..+++.+.+.+
T Consensus 113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 170 (434)
T PRK11663 113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI 170 (434)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667889999999999999999999999999999999999999999998776643
No 114
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.76 E-value=0.067 Score=56.20 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 012514 341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHV 395 (462)
Q Consensus 341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~ 395 (462)
++.|+.-.-..+..=++..++.|++..+.+.|+|.++.-....+|+++.+.+...
T Consensus 388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~ 442 (477)
T PF11700_consen 388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA 442 (477)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777778888899999999999999999999999999999999999877644
No 115
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.73 E-value=0.0012 Score=65.68 Aligned_cols=115 Identities=10% Similarity=0.010 Sum_probs=84.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..++..+..++..|+..++.++..+| +-+.++.++.+++.+...+.... ...+.
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 92 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGALADRYDRK-----------KVMIGADLIRAVLVAVLPFVALL-------------GGLNI 92 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhchh-----------HHHHHHHHHHHHHHHHHHHHHHc-------------CCCcH
Confidence 3456666777778888887766543322 23456666666666555544321 01356
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++....++.++++.+..|...+++.+..|++.|+..+|+......+|..+|+.+...+
T Consensus 93 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 151 (365)
T TIGR00900 93 WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM 151 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66677889999999999999999999999999999999999999999999988876643
No 116
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.0014 Score=66.22 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=105.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++.+...+.+.+..|++..+-.++-|| +-+...+.+..+|-+..++. .|.
T Consensus 51 G~lis~yAl~~ai~ap~l~~lt~r~~Rr-----------~lLl~~l~lFi~~n~l~alA------------------p~f 101 (394)
T COG2814 51 GQLITAYALGVALGAPLLALLTGRLERR-----------RLLLGLLALFIVSNLLSALA------------------PSF 101 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchH-----------HHHHHHHHHHHHHHHHHHHh------------------ccH
Confidence 5788999999999999998765433222 12333445555565555542 356
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL 413 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l 413 (462)
+.++..-++.+++--...+.....+.+++|++.|+.++|+-+....++..+|.-+.+++...- +|
T Consensus 102 ~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-----GW---------- 166 (394)
T COG2814 102 AVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-----GW---------- 166 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-----hH----------
Confidence 677888899999999999999999999999999999999999999999998877776554221 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 012514 414 DKFYWLLAALVAANLFVYVVVAR 436 (462)
Q Consensus 414 ~~~f~~la~l~~~~~v~~~~~~~ 436 (462)
..-|+..++++++..+..+...+
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 33478888888888888777777
No 117
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.70 E-value=0.0011 Score=67.28 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=83.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+.+.+..++..|+..++.+ |+ +..+-+.+|.++.+++.+..++. .+.
T Consensus 41 g~~~s~~~~~~~~~~~~~g~l~d----r~-------g~r~~~~~~~~~~~~~~~l~~~~------------------~~~ 91 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIALFSS----RY-------SLKHILLFLVALCVIGNAMFTLS------------------SSY 91 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc----cC-------ccHHHHHHHHHHHHHHHHHHHHh------------------CcH
Confidence 45667777888888888877553 32 23334667778878777766543 245
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
+++....++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.+.+.
T Consensus 92 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 92 LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 6667778999999999999999999999999999999999998888888888776553
No 118
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.68 E-value=0.0019 Score=54.28 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHH
Q 012514 258 GLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLA 337 (462)
Q Consensus 258 ~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli 337 (462)
....+..++..|+..++.++.. ..+-+.++..+.+++.+..... .+.++..
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g-----------~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~ 55 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFG-----------RKPVLLVGLFIFVLSTAMFALS------------------SNITVLI 55 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcc-----------hhHHHHHHHHHHHHHHHHHHHh------------------ccHHHHH
Confidence 3445566667777766543221 2223455666666665544432 1344555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 338 PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 338 ~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.+.+
T Consensus 56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 110 (141)
T TIGR00880 56 IARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL 110 (141)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHH
Confidence 5678999999999999999999999999999999999999999999998776643
No 119
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.68 E-value=0.0024 Score=64.56 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=84.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..++..+...+..|+...+.++..+| +-+.++.++.+++.+..++. .+.
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~ 100 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLWGDRYGRR-----------LPMVTSIVLFSAGTLACGFA------------------PGY 100 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHh------------------ccH
Confidence 4566677777788888888766544333 23556777777666655442 234
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++....++.|+|+....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus 101 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l 159 (405)
T TIGR00891 101 ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLV 159 (405)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666789999999999999999999999999999999999999999999998876644
No 120
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0018 Score=64.83 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI 101 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i 101 (462)
.+.+.++++..+.++|.++...+-.++++|.|+++.. |+++..+---.+.+|.++||-.+|.+.+..|+.+-|++
T Consensus 157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV 231 (464)
T KOG3764|consen 157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV 231 (464)
T ss_pred chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence 3478999999999999999999999999999998653 26788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012514 102 ITIVMAVSLLIFII 115 (462)
Q Consensus 102 ~~i~~~~~~iifl~ 115 (462)
.++.+++..++-++
T Consensus 232 L~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 232 LAIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHHHHHHHh
Confidence 98888887765444
No 121
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.65 E-value=0.018 Score=61.61 Aligned_cols=318 Identities=11% Similarity=0.069 Sum_probs=150.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 012514 16 CLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSW 95 (462)
Q Consensus 16 c~~~~~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~ 95 (462)
|..+++ ...+..|..+.++|.|... .....++|..+.+. | ..++.+..+..-+...+|+.++..+..+.+|
T Consensus 125 ~atA~~--~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~----R--~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W 195 (599)
T PF06609_consen 125 CATAQN--MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW----R--GLGLAIASIPFIITTWISPLIAQLFAAHSGW 195 (599)
T ss_pred hhcCCc--HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch----h--hhHhHHHHHHHHhhhcccHHHHHHhccCCCc
Confidence 444444 6779999999999988775 45566888876432 1 2233333333323333455555555556799
Q ss_pred hhHHHHHHHHHHHHHHHHH-Hcccc-eeecCCCCCCchhH------HHHH---------HHHHHhCCC-CCC-CCCCccc
Q 012514 96 GAADVIITIVMAVSLLIFI-IGRPF-YRYRVPKGSPLTPM------LQVL---------VAAIAKRNL-PHP-SDPDQLF 156 (462)
Q Consensus 96 ~~~F~i~~i~~~~~~iifl-~~~~~-~~~~~p~~~~~~~~------~~vl---------~~a~~~~~~-~~~-~~~~~l~ 156 (462)
+|.|++.++...++++... +.++. .+..+.++...+.. ...+ ...+.-... .+| +++..+-
T Consensus 196 Rw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa 275 (599)
T PF06609_consen 196 RWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIA 275 (599)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchh
Confidence 9999999888888776433 32221 11111112111111 1111 111111111 111 1111000
Q ss_pred cccccccccccccccccchhhhHhhhhcCCCCC-CCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHH
Q 012514 157 EYPKVVAKGRLLCHTKNLEFLDKAAILEDYETP-VDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFI 235 (462)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~~~ld~a~i~~~~~~~-~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~ 235 (462)
.. ..|. ..+ .+...-+.+.. ..+..|+++++ ++|.+. ..++...++.+.|......|.
T Consensus 276 ~l---viG~---------~~L-v~F~~wE~~~~~~~Pl~P~~Lf~-----~~r~~~---~~lvi~fi~G~~~~s~~~l~p 334 (599)
T PF06609_consen 276 PL---VIGF---------VLL-VAFVVWEWFGAPKDPLFPHRLFK-----DRRGFA---ALLVISFISGMNFFSVNILWP 334 (599)
T ss_pred hH---HHHH---------HHH-HHHHHhhhhccCCCCcCCHHHhc-----cchHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 000 01111110000 01234555543 222221 111222233333444555666
Q ss_pred HHHHHhccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 012514 236 KQAATMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKK 315 (462)
Q Consensus 236 ~qa~~~~~~~g~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~ 315 (462)
+|..++..+-..++. ...+......+.+.+...++..+..+. +| ....+.+|.++..+.+..++...
T Consensus 335 ~~~~~vf~~d~~~~~-~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~---------~Kw~li~~~~~~ta~~Gama~~~-- 401 (599)
T PF06609_consen 335 QQVVNVFGSDPISIT-EIGWISSPVGFGSCAGAVILGLLFSKI-RH---------IKWQLIFGSVLMTAFCGAMAAVR-- 401 (599)
T ss_pred HHHhhhccCCCcccc-eeehhhhhHHHHHHHHHHHHHHHHHHc-cc---------hhHHHHHHHHHHHHHHHHHHHcc--
Confidence 666554322110111 123444455555555555544433211 11 12234566666555444443321
Q ss_pred hhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 316 RLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 316 ~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
.+ ..+.+|.. -++.++|-..+.......+.-..|++.-|..+|+......+|+.+|..+..
T Consensus 402 -----~~-------n~~~~i~~--~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 402 -----PD-------NKNAAIAF--LVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred -----CC-------CcchHHHH--HHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 11 12233322 245566666666666667777899999999999999999999988876653
No 122
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.64 E-value=0.0027 Score=64.99 Aligned_cols=103 Identities=15% Similarity=0.023 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHH
Q 012514 261 AVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQS 340 (462)
Q Consensus 261 ~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~ 340 (462)
.+..++..|+.+++.++.. ..+-+.+|.++.+++++..... -+.|+++...
T Consensus 56 ~l~~~~~~~~~G~l~dr~g-----------~k~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~ 106 (400)
T PRK11646 56 QFIQQGLGIFGGAIADRFG-----------AKPMIVTGMLMRAAGFATMAIA------------------HEPWLLWLSC 106 (400)
T ss_pred HHHHHHHHhhhhHHHHHhC-----------chHHHHHHHHHHHHHHHHHHHh------------------ccHHHHHHHH
Confidence 4444555566666544322 2223567888888877766542 2456677778
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++.++++.+..|...+.+.+.+|++.|+..+|+......+|..+|+.+.+.+
T Consensus 107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l 158 (400)
T PRK11646 107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWL 158 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999988877644
No 123
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.036 Score=55.09 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV-SWGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i 101 (462)
+.+.++.|.+++++|.+....-..+++-+-|+++- ....+.|-.+.++|+.+++.++..+.++. ||+.+...
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 46788999999999999999999999888876543 56788999999999999999999998876 79888776
Q ss_pred HHHHHHHHHHHHH
Q 012514 102 ITIVMAVSLLIFI 114 (462)
Q Consensus 102 ~~i~~~~~~iifl 114 (462)
=+..-++++++.+
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 5565566665544
No 124
>TIGR00895 2A0115 benzoate transport.
Probab=97.61 E-value=0.00071 Score=68.10 Aligned_cols=109 Identities=16% Similarity=0.233 Sum_probs=79.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
++.++..+..++..++..++.++..+| +-+.+|.++.+++.+...+. .+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~------------------~~~~ 106 (398)
T TIGR00895 56 FLFSAGLIGMAFGALFFGPLADRIGRK-----------RVLLWSILLFSVFTLLCALA------------------TNVT 106 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHc------------------cchH
Confidence 344555566666667776655443322 23556666666666655432 2345
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++...++.+++.....+.....+.+..|++.|+..+|+......+|..+++.+.+.+
T Consensus 107 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 107 QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 5666778999999999999999999999999999999999999999999998776543
No 125
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.60 E-value=0.0027 Score=65.38 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=85.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++.+...+..++..|+..++..+.. ..+-+.+|+++.+++.+....... ..+.
T Consensus 41 g~l~s~~~~g~~i~~~~~g~l~~r~G-----------~r~~~~~g~~l~~~g~~l~~~~~~---------------~~~~ 94 (410)
T TIGR00885 41 ALVQSAFYGGYFIMAIPAAIFMKKLS-----------YKAGILLGLFLYALGAFLFWPAAE---------------IMNY 94 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-----------chHHHHHHHHHHHHHHHHHHHHHh---------------hccH
Confidence 45667777778888888777654332 233566888888888766443211 1245
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++++...++.++|..+..+....++.+.+|++.++..+++.....++|..+|+.+...+
T Consensus 95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778999999999999999999999999999999999999999999988877654
No 126
>PRK03699 putative transporter; Provisional
Probab=97.60 E-value=0.0059 Score=62.23 Aligned_cols=108 Identities=13% Similarity=0.168 Sum_probs=77.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..+...+...+..++..++.++..+| +-+.++.++.+++.+..++. -+.+
T Consensus 46 ~~~s~~~~~~~i~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~l~~~~------------------~~~~ 96 (394)
T PRK03699 46 NTFTFLNAGILISIFLNAWLMEIIPLK-----------RQLIFGFALMILAVAGLMFS------------------HSLA 96 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHc------------------chHH
Confidence 344555666666677777665544333 23556777777766655542 1345
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
+++...++.++++....+.....+.+..|++.|+..+++.....++|..+++.+.+.
T Consensus 97 ~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 153 (394)
T PRK03699 97 LFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAY 153 (394)
T ss_pred HHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677899999999999999999999999999999999888888888888776653
No 127
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.042 Score=57.82 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh------hccch
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ------EHVSW 95 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~------~~~g~ 95 (462)
.+.+.+..-..+.|+-.+..-|+....++.-|++++. ..-+.++|.+.++|.++|.++...+. ...||
T Consensus 132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~------g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSER------GLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhh------hhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 3467777888999999999999999999999986542 45688999999999999999998863 35799
Q ss_pred hhHHHHHHHHHHHHHHH
Q 012514 96 GAADVIITIVMAVSLLI 112 (462)
Q Consensus 96 ~~~F~i~~i~~~~~~ii 112 (462)
++.|++.++.+++..++
T Consensus 206 ~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIV 222 (495)
T ss_pred eeehhHHHHHHHHHHhe
Confidence 99999988777766553
No 128
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.57 E-value=0.003 Score=64.20 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=78.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..++..+..++..|+..++.++..+| +-+.+|.++.+++.+..... .+.+
T Consensus 42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~i~~~~~~~~------------------~~~~ 92 (392)
T PRK10473 42 IAFSVYLAGMAAAMLFAGKIADRSGRK-----------PVAIPGAALFIIASLLCSLA------------------ETSS 92 (392)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHh------------------CcHH
Confidence 344555556667778877766543222 23456777777766655432 2345
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
+++...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+...
T Consensus 93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~ 149 (392)
T PRK10473 93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL 149 (392)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677899999999999999999999999999999999998888888888777654
No 129
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.56 E-value=0.005 Score=63.37 Aligned_cols=108 Identities=11% Similarity=-0.009 Sum_probs=74.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514 256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW 335 (462)
Q Consensus 256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w 335 (462)
..++..+...+..|+...+. +|++ +.+-+.+|.++.+++.+..+.. .+.++
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~----dr~G-------rr~~l~~~~~~~~~~~~~~~~a------------------~~~~~ 106 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLS----DRIG-------RRPVLITGALIFTLACAATLFT------------------TSMTQ 106 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHH----HHcC-------chHHHHHHHHHHHHHHHHHHHc------------------CCHHH
Confidence 33444444555566655544 4432 2234556777777666655432 24566
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++..-+++|+|+.+..+.....+.+..|++.++..++++.....+|..+|+.+.+.+
T Consensus 107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l 163 (413)
T PRK15403 107 FLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAAL 163 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778999999887788888888899999999999999999999988887776543
No 130
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.53 E-value=0.00049 Score=71.94 Aligned_cols=112 Identities=10% Similarity=-0.106 Sum_probs=80.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
++.+...+.-.+..|+...+. .|+ ++.+-+.+++++.+++.+..+..-.. ...+.+
T Consensus 68 ~~~s~~~~~~~~~~~~~G~l~----Dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 123 (467)
T PRK09556 68 MIGLGFSITYGVGKTLVGYYA----DGK-------NTKQFLPFLLILSAICMLGFGASLGS-------------GSVSLG 123 (467)
T ss_pred HHHHHHHHHHHHHHhhhhhHh----hcc-------CccchHHHHHHHHHHHHHHHHHHHhc-------------ccchHH
Confidence 344444455556666666654 333 23445667777777766655543210 113455
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
.++...++.|++|....|.....+.+..|++.||.++|++.....+|..+++.+..
T Consensus 124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence 66677889999999999999999999999999999999999999999999987764
No 131
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.52 E-value=0.0052 Score=62.30 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=84.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+...+...+..|+..++.++..+| +-+.+|.++.+++++..++. .+.
T Consensus 44 G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~------------------~~~ 94 (381)
T PRK03633 44 GVVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM------------------VGF 94 (381)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh------------------ccH
Confidence 4566666777777788877766554443 24567888888777765542 245
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++++...++.++++....|.....+.+..|++.|+..+|.+.....+|..+|+.+.+..
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 95 WSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56667789999999999999888888999999999999999999999999998887643
No 132
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.50 E-value=0.0049 Score=63.22 Aligned_cols=109 Identities=14% Similarity=0.155 Sum_probs=82.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..++..+..++..|+..++.++.. ..+-+.+|.++.+++.+..++.. +.
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~l~dr~g-----------~r~~l~~~~~~~~~~~~~~~~~~------------------~~ 106 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGLLADKFG-----------RKPLMMWSIVAYSVGTGLSGLAS------------------GV 106 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-----------ChHHHHHHHHHHHHHHHHHHHHh------------------HH
Confidence 34556666777777777776554332 23345677888877777665532 34
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++++...++.|+|+....+....++.+..|++.|+.++|++....++|..+++.+...
T Consensus 107 ~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 107 IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 5566677899999999999999999999999999999999999999999998877653
No 133
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.49 E-value=0.01 Score=60.25 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=76.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..++..+...+..|+..++.++..+| +-+.++.++.+++.+..... .+.+
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~~ 108 (408)
T PRK09874 58 LVFSITFLFSAIASPFWGGLADRKGRK-----------IMLLRSALGMGIVMVLMGLA------------------QNIW 108 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCcH-----------HHHHHHHHHHHHHHHHHHHH------------------hhHH
Confidence 455666677778888887766543222 23456666666666554432 2355
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+.+.+
T Consensus 109 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 165 (408)
T PRK09874 109 QFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLL 165 (408)
T ss_pred HHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677888888765 467778888999999999999999998888888888776643
No 134
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.48 E-value=0.0023 Score=64.37 Aligned_cols=109 Identities=20% Similarity=0.160 Sum_probs=79.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..++..+...+..|+...+.+ |+ .+.+-+.+|.++.+++.+.....+ +.+
T Consensus 30 ~~~~~~~~~~~~~~~~~g~l~d----~~-------g~~~~~~~~~~~~~i~~~~~~~~~------------------~~~ 80 (377)
T PRK11102 30 MTLSAYILGFAIGQLFYGPMAD----SF-------GRKPVILGGTLVFALAAVACALAQ------------------TID 80 (377)
T ss_pred HHHHHHHHHHHHHHHhhchHHh----hc-------CChHHHHHHHHHHHHHHHHHHHHc------------------cHH
Confidence 3445556666666677666543 32 123346677777777777665431 234
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
.++...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+...+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 138 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWL 138 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555778899999999999999999999999999999999999999999988776533
No 135
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.48 E-value=0.0029 Score=65.61 Aligned_cols=146 Identities=12% Similarity=0.282 Sum_probs=98.4
Q ss_pred CeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 012514 248 GFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKG 327 (462)
Q Consensus 248 g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~ 327 (462)
+.++--+.+.++|-..-+++-++..+++ +|. ....-|.+|+.+.++=|+.....+
T Consensus 403 ~~~~LfGv~~a~~~~gEI~~~ffs~klI----~ki-------GHv~v~~lgLa~~~~Rf~~~S~L~-------------- 457 (618)
T KOG3762|consen 403 GIKTLFGVVSALCHAGEILFYFFSFKLI----EKI-------GHVNVMYLGLACNVGRFLYYSYLQ-------------- 457 (618)
T ss_pred CcceeeeehhhhhccchHHHHHHHHHHH----HHh-------cccceeeehhhHHHHHHHHHHHhc--------------
Confidence 3333344555566655566655555544 443 345567788888777777665543
Q ss_pred CcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHH-----HhHHHHHHHHHHhhcccccccCCCc
Q 012514 328 SLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSV-----IGAANFLSSFLITVVDHVTDKSGRS 402 (462)
Q Consensus 328 ~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~-----~~~g~~lg~~l~~~~~~~~~~~~~~ 402 (462)
++|..+|.-++.++--..++.+..+++...+|++++..++|+.-.. -++|+++|+.++..+.
T Consensus 458 ----n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg--------- 524 (618)
T KOG3762|consen 458 ----NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG--------- 524 (618)
T ss_pred ----CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh---------
Confidence 3455566669999999999999999999999999999988876533 3555555555443221
Q ss_pred cccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514 403 WFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYK 441 (462)
Q Consensus 403 w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~ 441 (462)
...+|+.+++.+++..+++..+-+..+++
T Consensus 525 ----------~~ttf~~~giAcl~~l~~~~~iq~~l~~~ 553 (618)
T KOG3762|consen 525 ----------ARTTFRIFGIACLVTLALFISIQLLLKRR 553 (618)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 13457778888888777777777766654
No 136
>PTZ00207 hypothetical protein; Provisional
Probab=97.48 E-value=0.0063 Score=65.21 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=84.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514 291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370 (462)
Q Consensus 291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~ 370 (462)
+..-+.+|.++.+++.+..++.... ....+.+.+....++.++|+....+.....+.+..| +.||.+
T Consensus 90 ~R~vllig~ll~~iG~ll~ala~~~------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a 156 (591)
T PTZ00207 90 PRPIFVLSMTVFCLGTLLFALTFQE------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAV 156 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcc------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHH
Confidence 4456778999999999887764210 011355556667889999999999999999999987 678999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012514 371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRY 438 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~ 438 (462)
+|++....++|..+.+.+...+ +.+ +...+|++++++.++..++.+.+.+..
T Consensus 157 ~Gi~~~~~gLGsaI~~~l~~~l-----------~~~-----~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 157 VAIMKTFTGLGSAILGSIQLAF-----------FSD-----NTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHH-----hHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 9999999999998654444321 111 124567777877777766666655544
No 137
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.47 E-value=0.00082 Score=67.07 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=79.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
++.+...+...+..++..++.++.. +.+-+.+|.++.+++.+..++.. +.+
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~~------------------~~~ 84 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSVSDRSN-----------PRVFLPIGLILCAIVNLFFGFST------------------SLW 84 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHhhC-----------CeehhHHHHHHHHHHHHHHHHhh------------------hHH
Confidence 4556666667777777776554332 22345677777777777665532 345
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHH
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSF 387 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~ 387 (462)
+++...++.++++....|.....+.+..|++.|+..+|++.....+|..+++.
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 137 (379)
T TIGR00881 85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPP 137 (379)
T ss_pred HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHH
Confidence 56667789999999999999999999999999999999999999999999883
No 138
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.46 E-value=0.0035 Score=63.99 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=82.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+.+.+...+.+|+..++.++.. +.+-+.+|+.+.+++.+..++.. +.
T Consensus 47 g~~~s~~~~~~~l~~~~~g~l~dr~G-----------~r~~l~~~~~l~~~~~~~~~~a~------------------~~ 97 (393)
T PRK09705 47 ALLTALPVVTMGGLALAGSWLHQHVS-----------ERRSVAISLLLIAVGALMRELYP------------------QS 97 (393)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhC-----------chHHHHHHHHHHHHHHHHHHHCc------------------ch
Confidence 45566666777777788777664433 33457788999999988877642 34
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++++..-++.|+|+....+...+.+.+..| +.|+.++|++......|..+|+.+...
T Consensus 98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~ 154 (393)
T PRK09705 98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPW 154 (393)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567789999999999999999998887 679999999998888888888776653
No 139
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.46 E-value=0.0031 Score=64.97 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=82.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++.++..+...+..|+.+++.++..+| +-+.+|.++.+++.+...+... ..+.
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 127 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAAF---------------ALSV 127 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhcc---------------ccch
Confidence 3455666677777778887766544333 2355677777777666554321 2233
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHH
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLI 389 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~ 389 (462)
++++...++.++|+....+....++.+..|++.|+.+++++.....+|..+++.+.
T Consensus 128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45666779999999999999999999999999999999999999999999998876
No 140
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.44 E-value=0.0049 Score=63.82 Aligned_cols=111 Identities=12% Similarity=0.093 Sum_probs=76.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..++..+...+..++..++.+ |.+ +.+-+.+|.++.+++.+..+.... ...+.+
T Consensus 65 ~~~~~~~~~~~~~~~~~G~l~d----r~g-------~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 119 (438)
T TIGR00712 65 FALSAISIAYGFSKFIMGSVSD----RSN-------PRVFLPAGLILSAAVMLLMGFVPW--------------ATSSIA 119 (438)
T ss_pred HHHHHHHHHHHHhhhccchhhh----ccC-------CceehHHHHHHHHHHHHHHhcccc--------------ccchHH
Confidence 4445555555666666666543 332 222455677777777666543211 012334
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
.+....++.++++....+...+.+.+..|++.||..+|++....++|..+++.+..
T Consensus 120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 44556788999999999989999999999999999999999999999988876654
No 141
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.43 E-value=0.0096 Score=59.39 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD 393 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~ 393 (462)
+.....+.++.-....+....++.+..|.+.||..+|+.....+++..+|+++.+...
T Consensus 355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 3446688899999999999999999999999999999999999999999998876443
No 142
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.066 Score=55.94 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-h-hhhhccchhhHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVV-V-YVQEHVSWGAADVI 101 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~-~-~l~~~~g~~~~F~i 101 (462)
.-++.+|.++.++..|.......-++.+.-|++ . |+..=...=.++++|.++|..++ + .++..-.|++.+..
T Consensus 116 ~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~----~--RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~ 189 (485)
T KOG0569|consen 116 FEMLILGRLIVGLACGLSTGLVPMYLTEISPKN----L--RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAF 189 (485)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh----h--ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHH
Confidence 667899999999999999999999999775543 2 25555667788889999885544 3 34455679999999
Q ss_pred HHHHHHHHHHHHHH
Q 012514 102 ITIVMAVSLLIFII 115 (462)
Q Consensus 102 ~~i~~~~~~iifl~ 115 (462)
+.+..++.++...+
T Consensus 190 ~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 190 PLIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHHhc
Confidence 88877777765544
No 143
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.42 E-value=0.0026 Score=69.19 Aligned_cols=129 Identities=12% Similarity=0.032 Sum_probs=88.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh--hhhc-------c---
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKR--LGVV-------E--- 321 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~--~~~~-------~--- 321 (462)
+++.+.+.+.-.+..++..++- .|. ..++.+++|.++.+++.++.++..... +.+. .
T Consensus 71 G~i~s~~~i~~~~~~i~v~~~~----~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSYFG----TKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred eeeeehhhHHHHHHHHHHHHhh----ccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 3556666667777777766533 332 356678899999999999887764211 1000 0
Q ss_pred ---cCCC----------------CCCc--ccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhH
Q 012514 322 ---ENPT----------------KGSL--SMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGA 380 (462)
Q Consensus 322 ---~~g~----------------~~~~--~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~ 380 (462)
+-+. .... ......++..-+++|+|+....+.+..++.+..|++.|+.++|++.....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 0000 0000 112334445679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 012514 381 ANFLSSFLITVVD 393 (462)
Q Consensus 381 g~~lg~~l~~~~~ 393 (462)
|..+|.++.+.+.
T Consensus 220 G~~lG~llgg~l~ 232 (633)
T TIGR00805 220 GPAFGYLLGSFCL 232 (633)
T ss_pred hhHHHHHHHHHHH
Confidence 9988877766543
No 144
>PRK12382 putative transporter; Provisional
Probab=97.40 E-value=0.0029 Score=64.23 Aligned_cols=118 Identities=12% Similarity=0.032 Sum_probs=80.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+...+...+...+..|+..++.++..+| +-+.+|.+..+++.+........ .. ....+.
T Consensus 54 g~~~s~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~ 112 (392)
T PRK12382 54 GIAVGIQFLATVLTRGYAGRLADQYGAK-----------RSALQGMLACGLAGLAYLLAAIL-----PV-----SAPFKF 112 (392)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhcch-----------HHHHHHHHHHHHHHHHHHhhhcc-----cc-----chhHHH
Confidence 3456667777788888888877654333 23455655555443322111100 00 001345
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++++..-++.|+|+....|...+.+.+..|++.|+.++|.+.....+|..+|+.+...+
T Consensus 113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l 171 (392)
T PRK12382 113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLL 171 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56666778999999999999999999999999999999999888888888888776643
No 145
>PRK10504 putative transporter; Provisional
Probab=97.38 E-value=0.012 Score=61.33 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=77.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..+...+...+..|+..++-++..+| +-+.++.++.+++.+..++. .+.+
T Consensus 49 ~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------~~~~ 99 (471)
T PRK10504 49 MVIVSYVLTVAVMLPASGWLADRVGVR-----------NIFFTAIVLFTLGSLFCALS------------------GTLN 99 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHh------------------CCHH
Confidence 344444555566677766655443322 23445666666666554321 2345
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++...+++++|.....|.....+.+..|++.++..+|+......+|..+|+.+.+.+
T Consensus 100 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l 157 (471)
T PRK10504 100 ELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL 157 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5566789999999999999999999999999999999999988888888887776643
No 146
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.36 E-value=0.015 Score=64.16 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=79.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
++.+...+..++..++..++..++.|| +-+.+++++.+++.+..++. .+.+
T Consensus 206 ~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa------------------~s~~ 256 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFV------------------QGYG 256 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH------------------hhHH
Confidence 455666677777777777665444333 23456666666655555432 1345
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
+++...++.++|.....|....++.+..|++.||..++++....++|..+++.+..
T Consensus 257 ~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 257 FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667899999999999999999999999999999999999999999888876554
No 147
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.36 E-value=0.0077 Score=60.18 Aligned_cols=108 Identities=9% Similarity=0.085 Sum_probs=75.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++.+...+..++..|+..++.++..+ .+.+.+|.++.+++.+..++.. .+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~i~~~~~~~~~-----------------~~~ 91 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKFGP-----------RYTTTLSLLLLAIPCLWAGLAV-----------------QSY 91 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHHHHHHHHHHHh-----------------hhH
Confidence 456666677777787887776543322 2346678888888877766532 034
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
++++...++.+++.... +.....+.+..|++.|+..++++.....+|..+++.+..
T Consensus 92 ~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 147 (366)
T TIGR00886 92 SVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP 147 (366)
T ss_pred HHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 55666778889987755 557889999999999999999988666666666655543
No 148
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.064 Score=54.06 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=51.6
Q ss_pred cchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012514 21 KVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE 91 (462)
Q Consensus 21 ~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~ 91 (462)
......|..++.+++.|.|..+...++++++.-++++..+ =.|+---..-+|++++|.+++++-.
T Consensus 101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~------rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAF------RLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH------HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3457788888999999999999999999999988754321 1455555667899999999988765
No 149
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.34 E-value=0.018 Score=58.83 Aligned_cols=107 Identities=13% Similarity=0.004 Sum_probs=72.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514 256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW 335 (462)
Q Consensus 256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w 335 (462)
..+...+...+..|+...+.+ |++ ..+-+.++.++.+++.+..+.. .+.++
T Consensus 53 ~~~~~~~~~~~~~~~~G~l~d----r~g-------~r~~l~~~~~~~~~~~~~~~~~------------------~~~~~ 103 (406)
T PRK15402 53 SMTAYLAGGMFLQWLLGPLSD----RIG-------RRPVMLAGVAFFILTCLAILLA------------------QSIEQ 103 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhC-------ChHHHHHHHHHHHHHHHHHHHH------------------ccHHH
Confidence 344445555566666665543 332 2223456666666666554432 13445
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+.+.
T Consensus 104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 159 (406)
T PRK15402 104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAA 159 (406)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888999999899999999999999999988888877777777777766553
No 150
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.34 E-value=0.00063 Score=69.25 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT 103 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~ 103 (462)
.+.++++.++.++|.+...|.......|..+++ ++.+++++++...++|..+++.+.|++.+..||+..|.+.+
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 455667778888999888888777777765432 13688999999999999999999999999899999999988
Q ss_pred HHHHHHHHHHHHcccceeecCC
Q 012514 104 IVMAVSLLIFIIGRPFYRYRVP 125 (462)
Q Consensus 104 i~~~~~~iifl~~~~~~~~~~p 125 (462)
+..+++++.....+++.+|+.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T PRK05122 376 LAALLGLALTWLLYRRAPRAVP 397 (399)
T ss_pred HHHHHHHHHHHHhcccccccCC
Confidence 8888887766555554444333
No 151
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.33 E-value=0.0098 Score=61.90 Aligned_cols=107 Identities=11% Similarity=0.072 Sum_probs=73.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514 256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW 335 (462)
Q Consensus 256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w 335 (462)
..+...+...+..|+..++.+ |++ +.+-+.+|.++.+++.+..++... ...+.++
T Consensus 68 ~~~~~~i~~~~~~~~~G~l~D----r~g-------~k~~l~~~~~~~~i~~~~~~~~~~--------------~~~~~~~ 122 (452)
T PRK11273 68 ALSGISIAYGFSKFIMGSVSD----RSN-------PRVFLPAGLILAAAVMLFMGFVPW--------------ATSSIAV 122 (452)
T ss_pred HHHHHHHHHHHHHhhhhhhhh----ccC-------CchhHHHHHHHHHHHHHHHHhhhc--------------ccccHHH
Confidence 344445555666677666543 332 223466777877777776665421 0123445
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHH
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSF 387 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~ 387 (462)
++...++.++++....|.....+.+..|++.|+..+|++.....+|..+.+.
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 174 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL 174 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5666788999999988888888899999999999999999988888754433
No 152
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.037 Score=55.97 Aligned_cols=87 Identities=10% Similarity=0.082 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc---hhhHHHH
Q 012514 25 VVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS---WGAADVI 101 (462)
Q Consensus 25 ~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g---~~~~F~i 101 (462)
+.+++.-+++++|.|-| +...+....-||+++ +..+..++= .-|+|..+..++.|++....+ |+.+-.+
T Consensus 106 ~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i 177 (417)
T COG2223 106 WQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI 177 (417)
T ss_pred HHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45666666777776666 444467777887643 367888888 999999999999999998888 9999999
Q ss_pred HHHHHHHHHHHHHHcccc
Q 012514 102 ITIVMAVSLLIFIIGRPF 119 (462)
Q Consensus 102 ~~i~~~~~~iifl~~~~~ 119 (462)
-.+.++++.+.+++..+.
T Consensus 178 ~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 178 YVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 899999988887776443
No 153
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.29 E-value=0.0029 Score=65.97 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=78.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514 256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW 335 (462)
Q Consensus 256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w 335 (462)
+.+...+.-++..++.+++.+ |++ ..+-+.++.++.+++.+...... ..+.++
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~d----r~g-------~r~~l~~~~~~~~~~~~~~~~~~----------------~~~~~~ 133 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAG----KYV-------FKWSIGIGMFLSSVISIVIPWAA----------------GGGIAL 133 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHH----HhC-------cchhhHHHHHHHHHHHHHHHHHH----------------HcCchH
Confidence 344444555556666665443 332 22345566666666655543321 123456
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++..-+++|++|....|.....+.+..|++.|+.++|++.....+|..+++.+.+.+
T Consensus 134 l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l 190 (465)
T TIGR00894 134 VVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190 (465)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677789999999999999999999999999999999999999999999998887644
No 154
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.25 E-value=0.01 Score=58.28 Aligned_cols=110 Identities=13% Similarity=0.193 Sum_probs=84.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+...+..++..|+..++.++..+ .+-+.+|.++.+++.+..... .+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~g~~~d~~g~-----------r~~~~~~~~~~~~~~~~~~~~------------------~~~ 87 (352)
T cd06174 37 GLIVSAFSLGYALGSLLAGYLSDRFGR-----------RRVLLLGLLLFALGSLLLAFA------------------SSL 87 (352)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCC-----------chhhHHHHHHHHHHHHHHHHh------------------ccH
Confidence 345566667777777887776543322 224667778777777766543 134
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++++...++.+++..+..+....++.+..|++.|+..+++......+|..+++.+...+
T Consensus 88 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 146 (352)
T cd06174 88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146 (352)
T ss_pred HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56667789999999999999999999999999999999999999999999998877644
No 155
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.24 E-value=0.0061 Score=60.70 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=76.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+...+...+..|+...+.++..+| +-+.+|.++.+++.+..++.. +.
T Consensus 41 g~~~s~~~~~~~~~~~~~G~l~d~~G~r-----------~~~~~~~~~~~~~~~~~~~~~------------------~~ 91 (377)
T TIGR00890 41 AIWFTLLLIGLAMSMPVGGLLADKFGPR-----------AVAMLGGILYGLGFTFYAIAD------------------SL 91 (377)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCcc-----------chhHHhHHHHHHHHHHHHHHH------------------HH
Confidence 3455666677777778877765543322 235677888888777666542 34
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
+.+....++.++|+....+.....+.+..|+ .|+.+++++....++|..+++.+..
T Consensus 92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 147 (377)
T TIGR00890 92 AALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLIT 147 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHH
Confidence 4455566799999998888888888888885 5999999999999999887665554
No 156
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.24 E-value=0.019 Score=59.91 Aligned_cols=119 Identities=17% Similarity=0.093 Sum_probs=79.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..+...+..++.+++..++-+++.|| +-+.++.++.+++.+..++.+........ .+....+
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr-----------~~~~~~~~l~~i~~~~~~~~~~~~~~~~~------~~~~~~~ 121 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISALGSAWPEFGFTSIGP------DNTGYVP 121 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHhhccccccccc------cchhHHH
Confidence 445555666777777777766544433 23556666666666655543211000000 0011233
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
+++..-++.|+|.....|....++.+..|++.||.++|++.....+|..++..+..
T Consensus 122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~ 177 (479)
T PRK10077 122 EFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNY 177 (479)
T ss_pred HHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556699999999999999999999999999999999999999999888765543
No 157
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.23 E-value=0.012 Score=59.70 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=64.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccc
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSS 411 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~ 411 (462)
+.++++..-++.|+||.. .+.....+.+..|++.|+.+++++.....+|..+++.+...+... . +|
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~--~---gW-------- 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA--G---GL-------- 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c---ch--------
Confidence 567777788999999986 456666678999999999999999999999999998776654310 0 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514 412 RLDKFYWLLAALVAANLFVYVVVAR 436 (462)
Q Consensus 412 ~l~~~f~~la~l~~~~~v~~~~~~~ 436 (462)
...|...++++++..++.+...+
T Consensus 144 --r~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 144 --QLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcC
Confidence 23456666666665554444433
No 158
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.22 E-value=0.0013 Score=55.28 Aligned_cols=86 Identities=16% Similarity=0.296 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.+.+...+.+++.+...+...++..|.+++++ +.+..++.+...++|..+++.+.+++.+..+|+..|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 35667777888999999999999999999987543 257899999999999999999999999888999999987
Q ss_pred HHHHHHHHHHHH
Q 012514 103 TIVMAVSLLIFI 114 (462)
Q Consensus 103 ~i~~~~~~iifl 114 (462)
++..+++.+...
T Consensus 124 ~~~~~~~~~~~~ 135 (141)
T TIGR00880 124 AILALAAFILLA 135 (141)
T ss_pred HHHHHHHHHHHh
Confidence 777666665444
No 159
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.21 E-value=0.011 Score=60.45 Aligned_cols=107 Identities=8% Similarity=-0.027 Sum_probs=78.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+...+...++.|+.+++-++..+| +-+.++.++.+++.+..++.. +.
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr-----------~vl~~~~~~~~~~~~~~~~~~------------------~~ 91 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKG-----------RVMFIANGIKLLGCLLMLFGI------------------HP 91 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCc-----------hhhHHHHHHHHHHHHHHHHHH------------------HH
Confidence 4566677777888888888766443222 235566666665554433321 11
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+...+++++++.+..|...+.+.+..|++.|+.++|+......+|..+|+.+.+.+
T Consensus 92 ---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 92 ---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23557899999999999999999999999999999999988888888888877643
No 160
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.20 E-value=0.0071 Score=63.52 Aligned_cols=142 Identities=12% Similarity=0.052 Sum_probs=92.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
.......+...+..++..++-++. . ...+-+.+|.++.+++++..++.. +.+
T Consensus 52 ~~~~~~~~~~~~~~~~~G~laDr~---~-------G~~~~l~~~~~~~~~g~~~~~~~~------------------~~~ 103 (475)
T TIGR00924 52 IIFGAYSALVYLLTSVGWWFGDRV---W-------GTKKTMVLGGIVLMLGHFMLAMSI------------------YPD 103 (475)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhh---c-------chHHHHHHHHHHHHHHHHHHHhcc------------------cHh
Confidence 344444455555555555544431 1 123346688888888887665421 233
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh---hhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSM---RSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSS 411 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~---~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~ 411 (462)
+++...++.++|+.+..|....++.++.|++. |+...++++....+|..+|+.+.+.+.. +.+
T Consensus 104 ~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~------------~~g-- 169 (475)
T TIGR00924 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE------------NYG-- 169 (475)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH------------hcC--
Confidence 44556678999999999999999999998754 8888999999999999999888764431 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514 412 RLDKFYWLLAALVAANLFVYVVVARRYS 439 (462)
Q Consensus 412 ~l~~~f~~la~l~~~~~v~~~~~~~~~~ 439 (462)
...-|...++.++++.++++...+.++
T Consensus 170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 170 -YHVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 133355556666666666666666664
No 161
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.20 E-value=0.21 Score=52.10 Aligned_cols=61 Identities=15% Similarity=-0.025 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYV 89 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l 89 (462)
.+.+.+++..++.++| |..-+.....+.+.|++++ +..+..++....|+|..++.++.+.+
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~ 186 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLV 186 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3477888888899998 5566778888999987532 36788888888888887777666553
No 162
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.18 E-value=0.027 Score=59.09 Aligned_cols=109 Identities=10% Similarity=0.096 Sum_probs=79.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
++.+...+..++..++..++.++..+ .+-+.++.++.+++.+..++. .+.+
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~~~~~~~~~~------------------~~~~ 109 (496)
T PRK03893 59 SLISAAFISRWFGGLLLGAMGDRYGR-----------RLAMVISIVLFSVGTLACGFA------------------PGYW 109 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHHHHHHH------------------hHHH
Confidence 34444555555666666665543322 223556777777777666543 1345
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++...++.+++.....+.....+.+..|++.|+..+|++....++|..+++.+...+
T Consensus 110 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 167 (496)
T PRK03893 110 TLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV 167 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666789999999999999999999999999999999999999999999998877643
No 163
>TIGR00898 2A0119 cation transport protein.
Probab=97.15 E-value=0.0045 Score=65.19 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=81.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++.+++..+..++..++.+.+-++..|| +-+.++.++.+++.+..++. .+.
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr-----------~~~~~~~~~~~i~~~~~~~~------------------~~~ 180 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRK-----------KVLLLSTLVTAVSGVLTAFS------------------PNY 180 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhccch-----------HHHHHHHHHHHHHHHHHHHc------------------ccH
Confidence 4566666777777777777765443322 22455666666665554432 245
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++++...++.|++.....+....++.+..|++.|+.+++++.+..++|..+++.+...
T Consensus 181 ~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 181 TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788999999999999999999999999999999999999999999888876553
No 164
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.13 E-value=0.044 Score=56.93 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=68.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514 291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370 (462)
Q Consensus 291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~ 370 (462)
+.+-+.++++.-++..+..++.. +.+.+...-+++|++|.... .....+++..|++.|+.+
T Consensus 91 ~K~vL~l~~l~Wsl~t~L~~fa~------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ra 151 (511)
T TIGR00806 91 YKPVLVLQALSFVCVWLLLLLGT------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRA 151 (511)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHH
Confidence 34456677777777776666542 35566777899999999999 999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhh
Q 012514 371 IAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~~ 391 (462)
+|++..+..+|..+++.+...
T Consensus 152 tsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 152 AAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886
No 165
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.0097 Score=62.52 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCC-ccccCCCccc
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGR-SWFGKDMNSS 411 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~-~w~~~~~n~~ 411 (462)
.+-++...+++|+-|-...|.........-.++.||..+|+|+...++|+.+|+++...+.+.....+. +|
T Consensus 134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW-------- 205 (495)
T KOG2533|consen 134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW-------- 205 (495)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc--------
Confidence 444555668999999999999999999999999999999999999999999999998764321111110 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514 412 RLDKFYWLLAALVAANLFVYVVVAR 436 (462)
Q Consensus 412 ~l~~~f~~la~l~~~~~v~~~~~~~ 436 (462)
.+.|..-++++++.+++.++.-+
T Consensus 206 --~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 206 --RWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred --eeehhHHHHHHHHHHheEEEEec
Confidence 34577778888877755444443
No 166
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.11 E-value=0.017 Score=60.99 Aligned_cols=113 Identities=15% Similarity=0.118 Sum_probs=79.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514 256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW 335 (462)
Q Consensus 256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w 335 (462)
+.+...+..++..++..++.++..|| +-+.+++++.+++.+..++... + ....+.++
T Consensus 61 ~~~~~~ig~~ig~~~~g~l~d~~Grr-----------~~~~~~~~~~~v~~~~~~~~~~--------~----~~~~~~~~ 117 (502)
T TIGR00887 61 VNGSASIGTLAGQLFFGWLADKLGRK-----------RVYGMELIIMIIATVASGLSPG--------S----SPKSVMAT 117 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHHHHHccC--------c----ccchHHHH
Confidence 45555555666666666655444333 2245666666666655543210 0 01122456
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++...++.|+|+....+....++.+.+|++.||.+++++.....+|..+++.+...
T Consensus 118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778999999999999999999999999999999999999999999888877653
No 167
>PRK10133 L-fucose transporter; Provisional
Probab=97.10 E-value=0.042 Score=57.05 Aligned_cols=110 Identities=8% Similarity=-0.016 Sum_probs=79.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
++.+...+...+..|+...+.+++.+ .+-+.+|+++.+++.+....... ..+.+
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr~G~-----------r~~l~~g~~~~~~~~~l~~~~~~---------------a~~~~ 118 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKKLSY-----------KAGIITGLFLYALGAALFWPAAE---------------IMNYT 118 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHHHHHHHHh---------------cCCHH
Confidence 45556666777777777766544333 33466788888887765432110 13456
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
+++...++.|+|.....+....++.+..|++.+...++++....++|..+|+.+..
T Consensus 119 ~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999999999888888877788888888888888877654
No 168
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.08 E-value=0.036 Score=56.28 Aligned_cols=109 Identities=18% Similarity=0.103 Sum_probs=76.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..+...+..++..|+...+.++.. +.+-+.+|.++.+++.+..... .+.+
T Consensus 47 ~~~~~~~~~~~~~~~~~G~l~Dr~g-----------rr~~~~~~~~~~~~~~~~~~~~------------------~~~~ 97 (394)
T PRK11652 47 AVMAAYLLTYGLSQLFYGPLSDRVG-----------RRPVILVGMSIFILGTLVALFA------------------HSLT 97 (394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhcC-----------ChHHHHHHHHHHHHHHHHHHHH------------------ccHH
Confidence 3445556666667777766554332 2223556777776666554432 1345
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++...++.+++.....+...++..+..|++.++..++++.+...+|..+++.+...+
T Consensus 98 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 155 (394)
T PRK11652 98 VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL 155 (394)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778889998888888889999999999999999999888888888887776543
No 169
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.08 E-value=0.022 Score=58.14 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=75.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+...+...+..|+..++.++.. +.+-+..|.++.+++.+....... ...+.
T Consensus 51 g~~~~~~~~~~~i~~~~~g~l~dr~g-----------~k~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~ 105 (402)
T TIGR00897 51 ASAFTLYGIAAAISAWISGVVAEIIG-----------PLKTMMIGLLLWCVGHAAFIVFGL--------------GHANY 105 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHHHHHHHHHHhc--------------cCccH
Confidence 34556666777777788777654332 223455677777766543322110 01234
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHH-HHHHHHHh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAAN-FLSSFLIT 390 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~-~lg~~l~~ 390 (462)
+.++...++.++|.....+.....+.+..|++.|+.++|++....++|. .+++.+.+
T Consensus 106 ~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~ 163 (402)
T TIGR00897 106 PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS 163 (402)
T ss_pred HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577888999888888888888899999999999999999998886 46665544
No 170
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.07 E-value=0.019 Score=58.92 Aligned_cols=115 Identities=13% Similarity=-0.044 Sum_probs=80.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+...+..++..|+..++.++..+ .+-+.++.++.+++++..++.... ...+.
T Consensus 55 g~~~~~~~l~~~~~~~~~G~l~dr~g~-----------~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 110 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGVLADRYDR-----------KKLILLARGTCGLGFIGLALNAFL-------------PEPSL 110 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhcCC-----------ceEEEehHHHHHHHHHHHHHHHHc-------------CCCcH
Confidence 456666777777787877776543322 223445666666666655432110 01244
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++....++.+++..+..+.....+.+..|++.++..++++....++|..+|+.+.+.+
T Consensus 111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l 169 (417)
T PRK10489 111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL 169 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence 55556678889999999999999999999999999999999888888888887776643
No 171
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.06 E-value=0.018 Score=60.05 Aligned_cols=135 Identities=11% Similarity=0.030 Sum_probs=82.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..++..+...+..|+..++.+ |++ ..+-+.+|.++.+++.+..++.. +.+
T Consensus 58 ~~~s~~~~~~~~~~~~~G~l~d----r~g-------~r~~l~~~~~~~~~~~~~~~~~~------------------~~~ 108 (455)
T TIGR00892 58 WISSIMLAVLYAGGPISSILVN----RFG-------CRPVVIAGGLLASLGMILASFSS------------------NVI 108 (455)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH----HcC-------chHHHHhhHHHHHHHHHHHHHhh------------------hHH
Confidence 3444444555666677666543 432 22345567777777666655432 222
Q ss_pred hHHH-HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514 335 WLAP-QSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL 413 (462)
Q Consensus 335 wli~-~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l 413 (462)
.+.. .-++.++|+....+.....+.+..| +.|+..+|++.....+|..+++.+...+.. ..+ .
T Consensus 109 ~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~------------~~g---w 172 (455)
T TIGR00892 109 ELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE------------SFG---W 172 (455)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH------------HhC---h
Confidence 2222 2367789998777777777777776 689999999999999999888777653321 111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 012514 414 DKFYWLLAALVAANLFVYVVV 434 (462)
Q Consensus 414 ~~~f~~la~l~~~~~v~~~~~ 434 (462)
..-|++.++++++..+..++.
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334666777666555444433
No 172
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.044 Score=57.96 Aligned_cols=118 Identities=12% Similarity=0.068 Sum_probs=80.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514 291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370 (462)
Q Consensus 291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~ 370 (462)
...-+.++++..+++.++..+.. +.+-++..-++.|+..............+..+.+.-+-+
T Consensus 364 ~~~~~~~~ll~~gl~~~~~p~~~------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a 425 (509)
T KOG2504|consen 364 ALVLFLLTLLIAGLARLFLPFAT------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNA 425 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchH
Confidence 34445567777777665554421 223334444778888888888887888999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514 371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSY 440 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~ 440 (462)
.|+..+..+++..+|+.+.+.+. |..+ +++..|...+...+++++.+++....+++
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~------------d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~ 481 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLY------------DITG--NYDHAFYFCGLCFLLSAVLLLILRECLKR 481 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeee------------eccC--CeeeehhhcChHHHHHHHHHHHhHHHHHh
Confidence 99999999999999988876332 2222 13455677777777777766666633443
No 173
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.05 E-value=0.012 Score=62.15 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=64.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCch--hhh
Q 012514 291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDS--MRS 368 (462)
Q Consensus 291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~--~~g 368 (462)
..+-+.+|.++.+++.+.+++... ... .++...+++++|+.+..|....++.++.|++ .|+
T Consensus 80 ~r~~~~~g~~~~~~g~~~~~~~~~---------------~~~--ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~ 142 (489)
T PRK10207 80 TKRTIVLGAIVLAIGYFMTGMSLL---------------KPD--LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLD 142 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc---------------chh--HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhh
Confidence 344577899988888877765321 011 1224668899999999999999999999887 457
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 369 LGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 369 ~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
...+++++...+|..+|+.+.+.+
T Consensus 143 ~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 143 GAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998877644
No 174
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.03 E-value=0.021 Score=57.06 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHH
Q 012514 296 GIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYL 375 (462)
Q Consensus 296 ~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~ 375 (462)
..+.++.+++++.+++... ..+.+++...+++.+++-....|...+++.+.+|++.|+.+.|+..
T Consensus 61 ~~~~~~~~~~~~~l~~~~~---------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~ 125 (356)
T TIGR00901 61 VLTQVLLLSLLLILSFLVP---------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYI 125 (356)
T ss_pred HHHHHHHHHHHHHHHcCCc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHH
Confidence 4566666666555543211 1345556666778888888889999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhcc
Q 012514 376 SVIGAANFLSSFLITVVD 393 (462)
Q Consensus 376 l~~~~g~~lg~~l~~~~~ 393 (462)
...++|..+++.+...+.
T Consensus 126 ~~~~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 126 VGYRAGMLLSGSLALVLA 143 (356)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999888876443
No 175
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.02 E-value=0.21 Score=53.00 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc-cchhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH-VSWGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i 101 (462)
+...+++|.++.++|.|+..-.+.-++++.-+++ .|...-+.+.+.+++|.+++..+....++. ++|+..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 5789999999999999999988888888875432 236778889999999999996555555443 489988877
Q ss_pred HHHHHHHHHHH
Q 012514 102 ITIVMAVSLLI 112 (462)
Q Consensus 102 ~~i~~~~~~ii 112 (462)
..+..++-.+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 176
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.98 E-value=0.075 Score=56.05 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhhcCCCCCCCccc-hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHH
Q 012514 270 FYEKILVPVLRRATGNERGIQILQ-RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADG 348 (462)
Q Consensus 270 i~~~~~~p~~~r~~~~~~~~s~~~-ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl 348 (462)
+...+|-|+..|+.. | .+...+ .+.++.++.+++...+++... ..+.+|+....++.+++-.
T Consensus 60 ~~~~l~gpl~Dr~~~-~-~~Grrr~~ll~~~i~~~~~~~~~a~~~~---------------~~~l~~l~~~~~l~~~~~a 122 (491)
T PRK11010 60 VFKFLWSPLMDRYTP-P-FLGRRRGWLLATQLLLLVAIAAMGFLEP---------------GTQLRWLAALAVVIAFCSA 122 (491)
T ss_pred HHHHHHHHHHHcccc-c-CCCCchHHHHHHHHHHHHHHHHHHHcCC---------------cchHHHHHHHHHHHHHHHH
Confidence 455666777777531 1 111222 355677777677666654321 1346677778888999999
Q ss_pred HHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 349 FALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 349 ~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
...+...+++.+..|++.|+.++|+......+|..+++.+...+
T Consensus 123 ~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l 166 (491)
T PRK11010 123 SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWL 166 (491)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998776543
No 177
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.97 E-value=0.019 Score=60.65 Aligned_cols=117 Identities=9% Similarity=0.035 Sum_probs=77.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh--hhHH
Q 012514 293 QRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSM--RSLG 370 (462)
Q Consensus 293 ~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~--~g~~ 370 (462)
+-+.+|.++.+++....++.. .+.+++....++.++|..+..|....++.++.|++. ++..
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~-----------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~ 151 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG-----------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGA 151 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhc
Confidence 346678888887766655421 112234446678899999999999999999988653 4457
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514 371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYK 441 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~ 441 (462)
+++++....+|..+|+.+.+.+. ++.+ ...-|...++.+++..+.++...++++++
T Consensus 152 ~~~~~~~~~iG~~~gp~i~g~l~------------~~~g---~~~~F~i~~i~~~i~~i~~~~~~~~~~~~ 207 (500)
T PRK09584 152 FTMYYMSINIGSFFSMLATPWLA------------AKYG---WSVAFALSVVGMLITVVNFAFCQRWVKQY 207 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH------------HhhC---HHHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence 78888999999999988776432 1121 13335555656666666666666655544
No 178
>PRK11043 putative transporter; Provisional
Probab=96.94 E-value=0.05 Score=55.37 Aligned_cols=108 Identities=15% Similarity=0.061 Sum_probs=72.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..++..+...+..++..++.+ |++ ..+-+.+|.++.+++.+..++. .+.+
T Consensus 45 ~~~s~~~~~~~~~~~~~g~l~d----r~g-------~r~~~~~~~~~~~~~~~~~~~~------------------~~~~ 95 (401)
T PRK11043 45 ASLSLFLAGFALGQLLWGPLSD----RYG-------RKPVLLAGLSLFALGSLGMLWV------------------ESAA 95 (401)
T ss_pred HHHHHHHHHHHHHHHhhhhHHh----hcC-------CcHHHHHHHHHHHHHHHHHHHh------------------cCHH
Confidence 3445555555666666666543 332 2234556776766666655432 2355
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
+++...++.++|.....+...+.+.+..|++.++...+......++|..+++.+.+.
T Consensus 96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 152 (401)
T PRK11043 96 QLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAW 152 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677888999888888888999999999988888888777777777777666553
No 179
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.92 E-value=0.021 Score=66.47 Aligned_cols=114 Identities=11% Similarity=-0.001 Sum_probs=78.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..++..+..+++.|+.+++..++.+| +-+.++.++.+++.+...+... .-+.
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk-----------~~l~~~~~~~~~~~~~~~~~~~---------------~~~~ 103 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKN-----------RVIRIVKLFEVGLTLLIVLAYY---------------LGWF 103 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHH-----------HHHHHHHHHHHHHHHHHHHHHH---------------HccH
Confidence 3444555556667777777765544333 1233444444444333322211 1235
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD 393 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~ 393 (462)
++++...++.|+++.+..|...+++.+..|++.|+.++|+.....++|..+|+.+.+.+.
T Consensus 104 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 104 WLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred HHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666777899999999999999999999999999999999999999999999888776543
No 180
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.80 E-value=0.12 Score=52.32 Aligned_cols=92 Identities=12% Similarity=0.042 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh---HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW---LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w---li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~ 370 (462)
-+-.|.++.+.+..++...-...-...++ . ...+..| ....|.+.|+|--......++++.+.+|++.|+..
T Consensus 52 yI~~G~~~~~~g~~~ap~a~~~l~~~~~~----~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~ 126 (403)
T PF03209_consen 52 YIWGGTLLQAGGLAIAPFALLLLAESGQQ----S-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRV 126 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccccc----c-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhh
Confidence 35578887777777666543321110001 1 1122333 33678999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q 012514 371 IAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~ 390 (462)
.++-+.+.=+|..+++.+.+
T Consensus 127 v~ivw~Mli~G~iv~ai~~g 146 (403)
T PF03209_consen 127 VAIVWVMLIVGIIVSAIVFG 146 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987766
No 181
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.79 E-value=0.02 Score=57.28 Aligned_cols=139 Identities=9% Similarity=-0.049 Sum_probs=78.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhh-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIG-IGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~-iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++.+...+..++..|+..++.+ |.+ ..+.+. .+.++.+++.+..+.. .+.
T Consensus 37 ~~~~~~~~~~~~~~~~~g~l~D----r~g-------~r~~~~~~~~~~~~~~~~~~~~~------------------~~~ 87 (375)
T TIGR00899 37 LFYTGSAIVGIAVSQLLATRSD----YQG-------DRKGLILFCCLLAALACLLFAWN------------------RNY 87 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----ccC-------CchHHHHHHHHHHHHHHHHHHhc------------------chH
Confidence 4455556666777787776543 321 222333 3445444444443321 234
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH--HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG--IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSS 411 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~--~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~ 411 (462)
++++..-++++.++....|...+.+.+..|++.|+.. .+......++|..+|+.+.+... +..+
T Consensus 88 ~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~------------~~~~-- 153 (375)
T TIGR00899 88 FLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA------------LGFG-- 153 (375)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH------------Hhcc--
Confidence 4444455667777777888888888888888777643 56666667778877776665332 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhc
Q 012514 412 RLDKFYWLLAALVAANLFVYVVVARR 437 (462)
Q Consensus 412 ~l~~~f~~la~l~~~~~v~~~~~~~~ 437 (462)
....|+..+.+.++..++.+...++
T Consensus 154 -~~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 154 -FTVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1234566666665555554443443
No 182
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0045 Score=66.14 Aligned_cols=215 Identities=20% Similarity=0.137 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT 103 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~ 103 (462)
....|+...+..-+ +..++|++++.|+++....- -+.+..+|..+||.||+++++..+. .|+++.
T Consensus 59 nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~--g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~ 123 (571)
T KOG1237|consen 59 NLVTYLTLELHASG-GGAANNVNAFGGTQFLLPLL--GAFLADSFLGRYFTINIGSLISLLG------------LFGLTL 123 (571)
T ss_pred HHHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHH
Confidence 34455666666666 89999999999999876222 2234678999999999999986554 666666
Q ss_pred HHHHHHHHHHHHcccceeecC-CCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhhh
Q 012514 104 IVMAVSLLIFIIGRPFYRYRV-PKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAAI 182 (462)
Q Consensus 104 i~~~~~~iifl~~~~~~~~~~-p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~i 182 (462)
..++.++..+-+ .+.... ..++|-+....++..++...... .++.+ ..+++..+
T Consensus 124 ~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G---------------~gg~r------~~~~~fGa- 178 (571)
T KOG1237|consen 124 SAMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALG---------------AGGIR------PCLLAFGA- 178 (571)
T ss_pred HHHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheec---------------cCCCC------Ccchhhcc-
Confidence 666666543332 111111 11222222233444444332110 01100 00111110
Q ss_pred hcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhcc-CCCCCeeeCccccchhhH
Q 012514 183 LEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNR-EIGNGFLIPPASVFGLTA 261 (462)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~-~~g~g~~ip~~~~~~~n~ 261 (462)
+. +.+...++++ .....+.|..+.|..+.+..++..++. +.. ||.+-++.....|.
T Consensus 179 -----------dQ---fd~~~~~~~~--------~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~ 235 (571)
T KOG1237|consen 179 -----------DQ---FDELDPVEVK--------GIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVLNA 235 (571)
T ss_pred -----------cc---cCccCcchhh--------CcccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHHHH
Confidence 00 0011111222 224567788888888888888754443 334 88899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 012514 262 VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAAL 311 (462)
Q Consensus 262 l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~ 311 (462)
+.+++|.+....+.+| +|++ + .+..+|-++.+++.-....
T Consensus 236 lai~iF~~g~~~y~~~-------~p~g-s--p~t~i~~Vlvaa~~k~~~~ 275 (571)
T KOG1237|consen 236 LAILIFLPGFPFYRYK-------KPRG-S--PKTRIGQVLVAAAFKRKAV 275 (571)
T ss_pred HHHHHHHcCceeEEee-------CCCC-C--chhHHHHHHHHHHHHHhcc
Confidence 9999998887653321 1211 3 5666888888888876553
No 183
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.74 E-value=0.00029 Score=74.88 Aligned_cols=125 Identities=18% Similarity=0.088 Sum_probs=3.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--c--c---------
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGV--V--E--------- 321 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~--~--~--------- 321 (462)
++.+.+-+.-+++..++.++ ..| . +.++.+++|.+++++|.++.++-+..--.+ . .
T Consensus 42 ~i~s~~di~~~~~~~~vsy~----g~~----~---hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 42 LISSSYDIGSLVVVLFVSYF----GGR----G---HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhh----c---CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 34455555555555555542 122 1 567899999999999999888654321111 0 0
Q ss_pred -cCC--------C----------CCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHH
Q 012514 322 -ENP--------T----------KGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAAN 382 (462)
Q Consensus 322 -~~g--------~----------~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~ 382 (462)
+.+ . +.....-.++++..-++.|+|..-..+.|.+++.+.++++..++|.|+.+.+..+|.
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP 190 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP 190 (539)
T ss_dssp -----------------------------------------SSS------------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence 001 0 011122234455667999999999999999999999999999999999999988887
Q ss_pred HHHHHHHh
Q 012514 383 FLSSFLIT 390 (462)
Q Consensus 383 ~lg~~l~~ 390 (462)
.+|-++.+
T Consensus 191 a~Gf~lg~ 198 (539)
T PF03137_consen 191 ALGFLLGS 198 (539)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 76644443
No 184
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.70 E-value=0.047 Score=57.20 Aligned_cols=172 Identities=9% Similarity=0.077 Sum_probs=95.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc-cc
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLS-MS 332 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~-~s 332 (462)
...+.+.++.-++.+|+.+++-+++-.|++++ ++. +..|.+..+++++.++..........+.. ++... ..
T Consensus 42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~--il~g~~~~~~~l~ll~~~~~~~~~~~~~~--~~~~~~~~ 113 (477)
T TIGR01301 42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPF--IAAGAALVAFAVILIGFAADIGHLFGDNL--DKKTKPRA 113 (477)
T ss_pred HHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHH--HHHHHHHHHHHHHHHHhCchhhhhccccc--cccchhHH
Confidence 35667778888888898888766543343321 121 33466777777776665432110000000 00111 11
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhh--hHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccC---C
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMR--SLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGK---D 407 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~--g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~---~ 407 (462)
.++.+..+.++.++--...+..-+++.+..|++.| +.+.+......++|+.+|..+.+..... .+++- +
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~------~~~~~~~~~ 187 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY------KIFPFTKTE 187 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------Hhccccccc
Confidence 22333344455556666667788999999999976 5788888888899999998776532110 01110 0
Q ss_pred ---CccchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514 408 ---MNSSRLDKFYWLLAALVAANLFVYVVVARRYS 439 (462)
Q Consensus 408 ---~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~ 439 (462)
.-..+...-|.+-+++.++..++-.+..|.+.
T Consensus 188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 00112344455555666666666666666554
No 185
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.70 E-value=0.019 Score=66.97 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=56.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD 393 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~ 393 (462)
+.++++..-+++++++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+.+.+.
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~ 168 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT 168 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778899999999999999999999999999999999999999999999988887553
No 186
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.62 E-value=0.057 Score=55.08 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF 373 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~ 373 (462)
.+.++.++.++++..+++... ..+.++++..+++.++......|...+++.+..|++.|+.+.++
T Consensus 70 ~l~~~~~~~~l~~~~l~~~~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~ 134 (402)
T PRK11902 70 WLLLTQVGLAASIAAMAFCPP---------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAV 134 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCc---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHH
Confidence 366667777777776654311 12455566676788888999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhhc
Q 012514 374 YLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 374 ~~l~~~~g~~lg~~l~~~~ 392 (462)
.....++|..+++.+...+
T Consensus 135 ~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 135 KVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 9999999999988776543
No 187
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=96.59 E-value=1.3 Score=46.90 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=67.2
Q ss_pred cchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHH
Q 012514 21 KVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADV 100 (462)
Q Consensus 21 ~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~ 100 (462)
..+.+.+++...+.+++.++...+...+++|.+.++. |..+-++ +.....|+.+++.+.+++.. +|++.++
T Consensus 168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~ 238 (521)
T KOG0255|consen 168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW 238 (521)
T ss_pred hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 3457889999999999999999999999999988654 2455666 77777888888888888876 8999999
Q ss_pred HHHHHHHHHHHH
Q 012514 101 IITIVMAVSLLI 112 (462)
Q Consensus 101 i~~i~~~~~~ii 112 (462)
+..+..++.++.
T Consensus 239 ~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 239 IISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHH
Confidence 877776666555
No 188
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.50 E-value=0.036 Score=58.84 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=78.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 012514 253 PASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS 332 (462)
Q Consensus 253 ~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s 332 (462)
.+.+++...+..+++.|+-+.+.+++-|| +-+..+-++.++..+.+++.... ...+
T Consensus 47 valv~~a~~LP~~Llsl~aG~laDr~drr-----------rili~~~~~~~~~~~~L~~l~~~-------------~~~~ 102 (524)
T PF05977_consen 47 VALVQAASTLPILLLSLFAGALADRFDRR-----------RILILSQLLRALVALLLAVLAFF-------------GLLS 102 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccch-----------HHHHHHHHHHHHHHHHHHHHHHh-------------CcCC
Confidence 35677888888999999988877654333 22334444444444444333221 1356
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
+|.++...++.+++..+..|.-.+.+-++.|++.-..+.++..+...++..+|+.+.+
T Consensus 103 ~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG 160 (524)
T PF05977_consen 103 PWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG 160 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence 6666777799999999999999999999999998887777777666665555555544
No 189
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.50 E-value=0.022 Score=61.75 Aligned_cols=167 Identities=14% Similarity=0.077 Sum_probs=104.5
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHH----hhhhc-----ccCC--------------C------CC---Ccccc-hh-h
Q 012514 290 QILQRIGIGMLFSIATMVFAALVEKK----RLGVV-----EENP--------------T------KG---SLSMS-VF-W 335 (462)
Q Consensus 290 s~~~ki~iG~~l~~l~~~~~~~~~~~----~~~~~-----~~~g--------------~------~~---~~~~s-~~-w 335 (462)
..++.+++|.++++++.++.++.+.. +++.. .++. . +. ...-+ +| .
T Consensus 160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 56788999999999999998876431 11100 0000 0 01 11222 22 2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCC-CccccCCCccchhH
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSG-RSWFGKDMNSSRLD 414 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~-~~w~~~~~n~~~l~ 414 (462)
++..-++.|+|+--+.+.|.+++.+-+-++...++.|+.+....+|..+|=++.++..++-. |. ..-..-+.++++-.
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYv-D~~~~~~~it~~DPrWI 318 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYV-DFGLSPIGITPTDPRWI 318 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeee-ccccCCCCCCCCCcchh
Confidence 34455899999999999999999999999999999999998887777766555554443211 10 00000011122211
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCCC
Q 012514 415 ----KFYWLLAALVAANLFVYVVVARRYSYKNVQRSVAVADCYQGDR 457 (462)
Q Consensus 415 ----~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (462)
.=|.+.++++++..+-++++-|.+.+..++++....|..+.|.
T Consensus 319 GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~ 365 (735)
T KOG3626|consen 319 GAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTES 365 (735)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhccccccc
Confidence 1245677888888888888888888765555555555555554
No 190
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.48 E-value=0.037 Score=58.25 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=67.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch---hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 012514 292 LQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV---FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRS 368 (462)
Q Consensus 292 ~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~---~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g 368 (462)
.+-+.+++++.+++.+..++...+ ..+.. ++++..-+++|+|+....|.+..++.+..|++.||
T Consensus 87 r~~l~~~~~l~~i~~~~~a~~~~~-------------~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg 153 (490)
T PRK10642 87 QKILAITIVIMSISTFCIGLIPSY-------------ATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG 153 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccH-------------HHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCc
Confidence 345678888888888877765321 01111 23566778999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhh
Q 012514 369 LGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 369 ~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
.+++++.....+|..+|+.+...
T Consensus 154 ~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 154 FMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888766543
No 191
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.44 E-value=0.023 Score=56.90 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF 373 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~ 373 (462)
-+.+|.++.+++.+..++.... .. ......++++...+++|+|.....+.....+.+..|++.|+.++++
T Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 136 (394)
T TIGR00883 67 TLVITLLMMGIGTLLIGLLPSY----AT------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSF 136 (394)
T ss_pred HHHHHHHHHHHHHHHHhhCCCh----hh------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHH
Confidence 3557777777777666553211 00 0001122355567899999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhhc
Q 012514 374 YLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 374 ~~l~~~~g~~lg~~l~~~~ 392 (462)
+.....+|..+++.+...+
T Consensus 137 ~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 137 QQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998776543
No 192
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=96.38 E-value=0.24 Score=51.99 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF 373 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~ 373 (462)
-+.+|.++.+++.+..++.. +.+.++...++.|+++.... .....+.+..|++.||..+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~ 163 (476)
T PLN00028 103 GSAFLLMLTAPAVFCMSLVS------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGI 163 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhc------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHH
Confidence 45566777776666554421 23344456688899987654 455678899999999999999
Q ss_pred HHHHHhHHHHHHHHHHh
Q 012514 374 YLSVIGAANFLSSFLIT 390 (462)
Q Consensus 374 ~~l~~~~g~~lg~~l~~ 390 (462)
+.....+|..+++.+..
T Consensus 164 ~~~~~~~g~~~~~~~~~ 180 (476)
T PLN00028 164 AAGWGNLGGGVTQLLMP 180 (476)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98766666666655443
No 193
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.35 E-value=0.018 Score=59.21 Aligned_cols=118 Identities=12% Similarity=0.021 Sum_probs=77.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
.+.++..+.-.+..|+.+.+.++.-+|+++ ....+.+|.++.+++++.+..... . ......+
T Consensus 39 ~i~~~~~i~~~i~~p~~G~lsDr~~~r~Gr------rr~~i~~~~~~~~i~~~~~~~~~~--------~----~~~~~~~ 100 (437)
T TIGR00792 39 TLFLVARILDAITDPIMGNIVDRTRTRWGK------FRPWLLIGAIPFSIVLVLLFTTPD--------F----SATGKLV 100 (437)
T ss_pred HHHHHHHHHHHhccchheEeeecCCCCCCC------cchhHHHhHHHHHHHHHHHHhCCC--------C----CcchHHH
Confidence 345555566667777777665543222221 122356777777777666543210 0 0112356
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhc-CchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQV-PDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~a-P~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
|.+..+++.+++.-+..+.-.++..+.+ |++.|+...+.......+|..+++.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~ 157 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVL 157 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888899999998888888888887 4688999999988888888877766544
No 194
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.29 E-value=0.23 Score=51.93 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF 373 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~ 373 (462)
-+.+|+..-.++.++.++.+. -|+.-...+....-.+..|...+++.+++.++.+|..+++
T Consensus 310 ~i~lGl~~~~~~~~~~af~~~-------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~ 370 (463)
T KOG2816|consen 310 LISLGLLSEFLQLLLFAFATE-------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGI 370 (463)
T ss_pred HhhHHHHHHHHHHHHHHHhcc-------------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhH
Confidence 566889888888888887642 1555556677777888999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhhccccc
Q 012514 374 YLSVIGAANFLSSFLITVVDHVT 396 (462)
Q Consensus 374 ~~l~~~~g~~lg~~l~~~~~~~~ 396 (462)
.....++.+.+++.+.+.+...+
T Consensus 371 is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 371 ISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999888665444
No 195
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=96.27 E-value=0.01 Score=61.17 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHhhhhhc------cchh
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWN-SGLCSGLLLGVTVVVYVQEH------VSWG 96 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY-~~iNiG~~i~~~~~~~l~~~------~g~~ 96 (462)
.+.++++..+.+++.+...+....++.|.+++++ +.+++++++ ...++|..+||.++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 4556777888899999999999999999886432 368899997 56789999999999999887 4699
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012514 97 AADVIITIVMAVSLLIFII 115 (462)
Q Consensus 97 ~~F~i~~i~~~~~~iifl~ 115 (462)
..|.++++..+++.+++..
T Consensus 382 ~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9998877776666654443
No 196
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.20 E-value=1.9 Score=45.15 Aligned_cols=82 Identities=11% Similarity=0.122 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHH--
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADV-- 100 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~-- 100 (462)
+...+.+..++.|+|.|..- .....+..-+++++ ++++.+++-.+.++|.++++.+++++. .+||+.-+-
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence 46778888899999999998 88899999887432 368899999999999999999999954 578865444
Q ss_pred -HHHHHHHHHHHH
Q 012514 101 -IITIVMAVSLLI 112 (462)
Q Consensus 101 -i~~i~~~~~~ii 112 (462)
++...+.+++++
T Consensus 186 ~Isl~s~~~a~~~ 198 (511)
T TIGR00806 186 IISLVFMTFSVFL 198 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 445555555554
No 197
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.055 Score=56.59 Aligned_cols=116 Identities=11% Similarity=0.187 Sum_probs=85.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514 291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370 (462)
Q Consensus 291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~ 370 (462)
..+-+..+.++.+++.+...+... .+.+.++..-+++|++|....|.-.....+-+|++.|++.
T Consensus 102 ~r~v~~~~~~~sa~~t~l~P~aa~----------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~ 165 (466)
T KOG2532|consen 102 ARRVFFISGLISALLTLLTPLAAS----------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTF 165 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH----------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHH
Confidence 455678888888888877776542 3444556677999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514 371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVAR 436 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~ 436 (462)
.++.+....+|+.++..+.+..-.- . .+| ..-|.+.++++++..++++.+.+
T Consensus 166 ~ail~~g~q~g~v~~mp~sg~lc~s-~---~GW----------~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 166 IAILTAGSQLGTIITMPVSGLLCES-S---LGW----------PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhcc-C---CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988888886665533211 0 034 22356677777766666655554
No 198
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.14 E-value=0.085 Score=54.89 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=96.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+..++.-.+..|+++++= +|. + +..+-+..|.+++++|-++...++.. . +-+.
T Consensus 74 G~viaa~slg~~i~~liF~~Ws----~k~-~-----~~k~Pli~s~ii~~~g~llY~~l~~~-----~--------~~~~ 130 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWS----NKT-G-----SVKKPLIVSFLIAIIGNLLYLALAYV-----P--------NGVK 130 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccc----ccc-C-----CcccCHHHHHHHHHHHHHHHHHHHhc-----c--------cchH
Confidence 4566778889999999998732 221 1 23455789999999999888666642 1 1167
Q ss_pred hhHHHHHHHHHHH-HHHHhhHHHHHHhhhcCchhhhHHHHHH--HHHHhHHHHHHHHHHhhcccccccCCCcccc-CCCc
Q 012514 334 FWLAPQSIISGVA-DGFALVGLQEYFYDQVPDSMRSLGIAFY--LSVIGAANFLSSFLITVVDHVTDKSGRSWFG-KDMN 409 (462)
Q Consensus 334 ~wli~~~~l~~~g-El~~~p~~~~~~~~~aP~~~~g~~~g~~--~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~-~~~n 409 (462)
|++...+++.|+| -.+..--.+.-..+-.+++.|.++.... -+...+|..++..+..+-+. |-.|++ -.+|
T Consensus 131 y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~-----G~~i~~~~~~n 205 (488)
T KOG2325|consen 131 YLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK-----GFMILPGLIFN 205 (488)
T ss_pred HHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC-----ceEEcCcceEE
Confidence 8888999999999 5555556666666667777776665554 45556666666555443221 113555 2344
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514 410 SSRLDKFYWLLAALVAANLFVYVVVARRYSY 440 (462)
Q Consensus 410 ~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~ 440 (462)
.-.... |+.+++.++..++..+..|.-.+
T Consensus 206 ~YTap~--w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 206 MYTAPA--WLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred ecchHH--HHHHHHHHHHHHHHHhheeeccc
Confidence 322222 55666666666666665555443
No 199
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.09 E-value=0.16 Score=55.37 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc----------
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH---------- 92 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~---------- 92 (462)
-+.++++|.++.++|.--+.|--.+++=|-..++ +...++.+.|..--+|.++|.+++++.-+-
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~ 309 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG 309 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence 3558888899999998776665555554443332 235789999999999999999999986431
Q ss_pred ---------cchhhHHHHHHHHHHHHHHHHHHcccce
Q 012514 93 ---------VSWGAADVIITIVMAVSLLIFIIGRPFY 120 (462)
Q Consensus 93 ---------~g~~~~F~i~~i~~~~~~iifl~~~~~~ 120 (462)
-.|+++|++++..++++.+.+++.-|.+
T Consensus 310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 2599999999999998888777654443
No 200
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.01 E-value=0.19 Score=50.20 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=74.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
++..+++.+...+..|+..++.++..+| +.+.+|.++.+++.+.. .. .+.
T Consensus 38 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~-~~------------------~~~ 87 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPWLARRFGEE-----------RSVAAGLLLIAAGILIR-SA------------------PGT 87 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCch-----------HHHHHHHHHHHHHHHHH-Hh------------------ccH
Confidence 4566777778888888888765433222 23556766666555443 11 123
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++++...++.++|.....+.....+.+..| +.|+.++|++.....+|..+++.+...
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~ 144 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVP 144 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556688899999888888888888887 479999999999989999888776653
No 201
>PRK15011 sugar efflux transporter B; Provisional
Probab=95.84 E-value=0.2 Score=50.94 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhh--hHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMR--SLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~--g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
.+++.....+.+..+....|...+.+.+..|++-| +.+.++.....++|..+|+.+.+.+
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l 166 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYAL 166 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33333333444555556788888888887776544 4566788888888888888777644
No 202
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=95.84 E-value=2.6 Score=43.10 Aligned_cols=88 Identities=23% Similarity=0.420 Sum_probs=64.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514 291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370 (462)
Q Consensus 291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~ 370 (462)
..+-+-+|+++..+..+...+.+. +.. +|.. -.+.++..-=+....=++..+.+|++..+..
T Consensus 317 ~k~vl~~~lvi~~~~~~~~~~~~~---------------~~~-f~i~--gll~g~s~G~~qA~SRSy~~~lvp~~k~~~f 378 (438)
T COG2270 317 SKPVLMIGLVILSIAALYLIFLEG---------------ELD-FWIL--GLLVGTSLGGAQASSRSYLARLVPKGKEGRF 378 (438)
T ss_pred CceeehHHHHHHHHHHHHHHHccc---------------cHH-HHHH--HHHHHHhcchHHHHHHHHHHHhCCCccccce
Confidence 335566778777777766655432 222 2332 1455666666677778899999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccccc
Q 012514 371 IAFYLSVIGAANFLSSFLITVVDHVT 396 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~~~~~~~ 396 (462)
.|++.++.-.++.+|+.+++.+...+
T Consensus 379 Fglyaltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 379 FGLYALTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred eehhhhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999776554
No 203
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=3 Score=43.36 Aligned_cols=163 Identities=11% Similarity=0.092 Sum_probs=93.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
--+.+++.+.+-+..-+-+-.+.++.+|.++ +....-+.+|.++.-++++..-+.-....+..+.......-.-+.
T Consensus 278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~ 353 (461)
T KOG3098|consen 278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSY 353 (461)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccch
Confidence 3455666666666666655555555555332 234445666666666555543321111110000000000001112
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL 413 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l 413 (462)
..-...++++|+|+.+....-+..+....| +-|..+-++.-+..++++.++-.... .+ .+
T Consensus 354 ~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~-~~------------------~l 413 (461)
T KOG3098|consen 354 YLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP-YL------------------LL 413 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh-hh------------------HH
Confidence 222335589999999999999999999994 55667778888888888877643321 00 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514 414 DKFYWLLAALVAANLFVYVVVARRYSY 440 (462)
Q Consensus 414 ~~~f~~la~l~~~~~v~~~~~~~~~~~ 440 (462)
..+...+.+...+..++++.++++++.
T Consensus 414 ~~~~l~~~i~~~i~~~~~~~~~~~~~~ 440 (461)
T KOG3098|consen 414 YIYTLGLPIFCVIATTIFFIVAERTQA 440 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888888888853
No 204
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=95.73 E-value=0.15 Score=52.52 Aligned_cols=88 Identities=9% Similarity=0.071 Sum_probs=64.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHH
Q 012514 293 QRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIA 372 (462)
Q Consensus 293 ~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g 372 (462)
+-+.+++++.+++.+..++...+ . . ....+..+++..-+++|+||....|....++.+..|++.||.+++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~----~-~-----~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~ 163 (432)
T PRK10406 94 KSMLISVCMMCFGSLVIACLPGY----E-T-----IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYAS 163 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCc----h-h-----HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHH
Confidence 35667888887777766553211 0 0 001123456667789999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHh
Q 012514 373 FYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 373 ~~~l~~~~g~~lg~~l~~ 390 (462)
++......|..++..+..
T Consensus 164 ~~~~~~~~G~~~~~~~~~ 181 (432)
T PRK10406 164 FQYVTLIGGQLLALLVVV 181 (432)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998888888888766544
No 205
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=95.69 E-value=0.17 Score=51.34 Aligned_cols=117 Identities=9% Similarity=0.165 Sum_probs=89.0
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 012514 289 IQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRS 368 (462)
Q Consensus 289 ~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g 368 (462)
.+|.+=|++|++++++..+..++.+ |.+.++..+++.++-+-.-.|.....+++--|++.||
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs~------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG 152 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFSP------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERG 152 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhhh------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccC
Confidence 3677788999999999999988742 5566677889999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514 369 LGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVAR 436 (462)
Q Consensus 369 ~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~ 436 (462)
...++|..+..+|..+.+.++.+ .....+. +| ..-|+.=++++++.+++.+..-|
T Consensus 153 ~~~siWn~shNiGGal~~~~~~l-a~~~~~~--~w----------~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 153 TWWSIWNTSHNIGGALAPLVALL-AFFAFHG--GW----------RAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred ceEEEehhhhhcccchHHHHHHH-HHHHhcc--ch----------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888732 1111110 12 12255566666666666555544
No 206
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.66 E-value=0.46 Score=48.06 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=60.8
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhH
Q 012514 290 QILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSL 369 (462)
Q Consensus 290 s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~ 369 (462)
+..+-+.+|+.+.+++..+..=... .-+....+...++++.|--+.-.+++.++..+.|++..+.
T Consensus 76 gyk~gi~lgL~l~avg~~lF~pAa~---------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~ 140 (422)
T COG0738 76 GYKAGIVLGLLLYAVGAALFWPAAS---------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAF 140 (422)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh---------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH
Confidence 5566788999999998876642211 1223344556688999999999999999999999976666
Q ss_pred HHHHHHHHHhHHHHHHHHHHh
Q 012514 370 GIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 370 ~~g~~~l~~~~g~~lg~~l~~ 390 (462)
=+.+--...++|..+++.+++
T Consensus 141 rlnl~q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 141 RLNLAQAFNGLGAILGPLLGS 161 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 555555555666666655554
No 207
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.66 E-value=0.069 Score=52.73 Aligned_cols=62 Identities=6% Similarity=-0.069 Sum_probs=56.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD 393 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~ 393 (462)
+..+.+..+++.+.|-.+..++.+.++....|++.++..+++-....++|..+|+.+++.+-
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999999999999999999999988543
No 208
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=95.66 E-value=0.18 Score=53.19 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCch--hhhHHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDS--MRSLGI 371 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~--~~g~~~ 371 (462)
-+.+|.++.+++.+.++..+ .+..++.....+..+|..+..|...+++.++-|++ .|+...
T Consensus 78 ~iliG~il~~lg~lll~~~~-----------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf 140 (493)
T PRK15462 78 AVMLGALLMAIGHVVLGASE-----------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGF 140 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccccee
Confidence 35688888888876554211 01112223344556676677777778899998875 788899
Q ss_pred HHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514 372 AFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSY 440 (462)
Q Consensus 372 g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~ 440 (462)
++++....+|..+++.+.+.+. ++.+ ...-|.+.++.+++..+.++...|++.+
T Consensus 141 ~i~Y~~~nlG~~iap~l~g~L~------------~~~G---w~~~F~iaaigm~l~li~~~~~~~~l~~ 194 (493)
T PRK15462 141 SLMYAAGNVGSIIAPIACGYAQ------------EEYS---WAMGFGLAAVGMIAGLVIFLCGNRHFTH 194 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH------------hhhC---hHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999888899999988877443 1121 1233555555566666666655555543
No 209
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=95.61 E-value=1.4 Score=46.09 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=58.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514 291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370 (462)
Q Consensus 291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~ 370 (462)
+.+-+.++.++.++..+..++... + ...|.+.++...++.|++ ....+.++..+.+..|++.||++
T Consensus 99 ~R~v~~~~~ll~~i~~~~~~~a~~--------~-----~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A 164 (462)
T PRK15034 99 GRRWTVFSTAILIIPCVWLGIAVQ--------N-----PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSA 164 (462)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHc--------c-----cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHH
Confidence 444566777777777776665310 0 013566667788999998 55788899999999999999999
Q ss_pred HHHHH----HHHhHHHHHHHHHH
Q 012514 371 IAFYL----SVIGAANFLSSFLI 389 (462)
Q Consensus 371 ~g~~~----l~~~~g~~lg~~l~ 389 (462)
+|++. +...++..+.+.++
T Consensus 165 ~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 165 LGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99995 44444445554433
No 210
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=95.23 E-value=0.12 Score=52.19 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh---hhHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSM---RSLG 370 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~---~g~~ 370 (462)
-+.+|.++..+|.+++.+..... .. ....+...+.....++++|....-|....+..+|-+++. |...
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~---~~------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~ 73 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPP---SL------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSF 73 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSS---SC------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcc---hh------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhh
Confidence 35688888888888866654210 00 012334455667889999999999999999999999874 3344
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 012514 371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKN 442 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~ 442 (462)
-..++....+|..++..+...+. ++.+ ....|++.++.++++.++|+...++|+++.
T Consensus 74 F~~fY~~in~G~~~~~~~~~~i~------------~~~~---~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~ 130 (372)
T PF00854_consen 74 FNWFYWGINIGSLFSPTLVPYIQ------------QNYG---WFLGFGIPAIGMLLALIVFLSGRKRYRKVA 130 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHH------------HCS----HHHHHHHHHHHHHHHHHHHHCCCCTT--S-
T ss_pred HHHHHHHHhhhhHhhcccchhhc------------cccc---hhhhhhHHHHHHHHHHHHHHhCCcCCcCcC
Confidence 55677888999988866554332 2221 245678888889999999999988988873
No 211
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.11 E-value=0.25 Score=50.19 Aligned_cols=114 Identities=8% Similarity=-0.061 Sum_probs=61.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+...++..+...+..|+..++-++..||+ .+..+.+..++++......... . ....+.
T Consensus 41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr~-----------~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~ 98 (396)
T TIGR00882 41 GIVFSCISLFSILFQPLFGLISDKLGLKK-----------HLLWIISGLLVLFAPFFIYVFG-----P------LLQSNI 98 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHHHhh-----h------HHHHHH
Confidence 45667778888888899888776654442 2223333333322211111000 0 000112
Q ss_pred hh-HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 334 FW-LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 334 ~w-li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++ .+...++.+++.....|...+++.+..+++ +...|......++|..+|+.+.+.
T Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~ 155 (396)
T TIGR00882 99 LVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGI 155 (396)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhh
Confidence 22 334557778888888888888877765543 344455555556666666666553
No 212
>PRK15075 citrate-proton symporter; Provisional
Probab=95.08 E-value=1 Score=46.41 Aligned_cols=85 Identities=11% Similarity=0.173 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc---hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS---VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s---~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~ 370 (462)
-+.++.++.+++.+..++...+ .... ..+++..-++.++|+....|....++.+..|++.|+.+
T Consensus 88 ~l~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~ 154 (434)
T PRK15075 88 GLIVTLSIMASGTLLIAFVPGY-------------ATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFY 154 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCcH-------------HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHH
Confidence 4567777777777766653211 0000 11234455889999999999889999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhh
Q 012514 371 IAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++++.....+|..+++.+...
T Consensus 155 ~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 155 TSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999887777766666555443
No 213
>PRK09952 shikimate transporter; Provisional
Probab=94.86 E-value=0.4 Score=49.67 Aligned_cols=107 Identities=12% Similarity=0.013 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHH
Q 012514 268 VTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVAD 347 (462)
Q Consensus 268 ~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gE 347 (462)
.|+-..+.-++.+|++ ..+-+.+++++.+++.+..++...+ . .-+ -.+.+.++..-+++|+|+
T Consensus 77 ~~~g~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~----~-~~~-----~~~~~~l~~~R~l~G~~~ 139 (438)
T PRK09952 77 RPLGGVVFGHFGDRLG-------RKRMLMLTVWMMGIATALIGLLPSF----S-TIG-----WWAPVLLVTLRAIQGFAV 139 (438)
T ss_pred HhhHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHhcCCcH----H-HHH-----HHHHHHHHHHHHHHHhhh
Confidence 3444444444445542 3345567777777777766653211 0 000 001123555668899999
Q ss_pred HHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 348 GFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 348 l~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
....|....++.+..|++.||.+++......++|..++..+...
T Consensus 140 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~ 183 (438)
T PRK09952 140 GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL 183 (438)
T ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888766553
No 214
>PRK11462 putative transporter; Provisional
Probab=94.85 E-value=0.22 Score=52.11 Aligned_cols=85 Identities=13% Similarity=-0.007 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcC-chhhhHHHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVP-DSMRSLGIA 372 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP-~~~~g~~~g 372 (462)
.+.+|.+..+++++.+.... +. +...-..|....|+++.++--+....-.++...+++ ++.|+..++
T Consensus 82 ~il~g~i~~~i~~~llf~~p--------~~----s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s 149 (460)
T PRK11462 82 WVLFGALPFGIVCVLAYSTP--------DL----SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQS 149 (460)
T ss_pred hHhHHHHHHHHHHHHHHhCC--------CC----CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHH
Confidence 45577777777776554321 00 011225678889999999999999999999999999 779999999
Q ss_pred HHHHHHhHHHHHHHHHHh
Q 012514 373 FYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 373 ~~~l~~~~g~~lg~~l~~ 390 (462)
.-.....+|..+++.+..
T Consensus 150 ~r~~~~~iG~~~~~~~~~ 167 (460)
T PRK11462 150 WRFVLATAGGMLSTVLMM 167 (460)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 988888888877766644
No 215
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=94.77 E-value=0.64 Score=49.26 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=85.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++.+...+...+..++..++-+.+.||. -+.++.++..++.++.++. .++
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a------------------~~~ 142 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALA------------------PSW 142 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHh------------------hhH
Confidence 57777777888888888888766665552 3567777777777777653 256
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHH
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLS 385 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg 385 (462)
.+++..-++.|+|--+.+....-++...+|++.||.+.++..+...+|..++
T Consensus 143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~ 194 (513)
T KOG0254|consen 143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG 194 (513)
T ss_pred HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999999999999999999888
No 216
>PTZ00207 hypothetical protein; Provisional
Probab=94.63 E-value=8 Score=41.80 Aligned_cols=76 Identities=11% Similarity=-0.001 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHhhhhhccchhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLL-LGVTVVVYVQEHVSWGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~-i~~~~~~~l~~~~g~~~~F~i 101 (462)
+.+.+++...+.++|.|.+.+.......+.|+++ +..+.++.....++|+. ++++..+++.+ +|+..|++
T Consensus 119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~-------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~ 189 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSN-------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFF 189 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHH
Confidence 5788888999999999999888888889988521 26789999999999986 46666666654 45555554
Q ss_pred HHHHHH
Q 012514 102 ITIVMA 107 (462)
Q Consensus 102 ~~i~~~ 107 (462)
.++..+
T Consensus 190 l~vl~~ 195 (591)
T PTZ00207 190 LMSFAL 195 (591)
T ss_pred HHHHHH
Confidence 433333
No 217
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=94.34 E-value=0.67 Score=46.86 Aligned_cols=59 Identities=10% Similarity=-0.141 Sum_probs=43.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+.++++..+++++.+.-...|...+.+.+ +++.|+...|......++|..+++.+.+.+
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l 151 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGL 151 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777888877777887777654 356778888888888888888888776643
No 218
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=94.26 E-value=1.7 Score=46.79 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=77.4
Q ss_pred HhccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 012514 240 TMNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGV 319 (462)
Q Consensus 240 ~~~~~~g~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~ 319 (462)
+++.++| +- -...|+...+.+...+..|+++++-+-+.||. -+.+|.++..+|.++.+-.
T Consensus 69 ~I~~diG-~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA------- 128 (599)
T PF06609_consen 69 YINADIG-GS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATA------- 128 (599)
T ss_pred HHHHhcC-CC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcC-------
Confidence 3444555 31 12247778888888888899988776665553 3557778888888776532
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 320 VEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 320 ~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
.+++ -++...++.++|-...... ...+.+..|.+-|+...++.....-+....|+.+...
T Consensus 129 ---------~~~~--~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~ 188 (599)
T PF06609_consen 129 ---------QNMN--TFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL 188 (599)
T ss_pred ---------CcHH--HHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH
Confidence 1233 3355678888886666544 4457899999999887776665555544455555543
No 219
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=94.21 E-value=0.18 Score=53.05 Aligned_cols=87 Identities=13% Similarity=0.209 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-hhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS-WGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i 101 (462)
+.+.+++.-+++++..|...+...++.+++.|+++. ..+|++|...--..+++||++.+.+.+..| .+++|..
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e------~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE------AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 456678877899999999999999999999987542 579999999999999999999999988765 7889888
Q ss_pred HHHHHHHHHHHHHH
Q 012514 102 ITIVMAVSLLIFII 115 (462)
Q Consensus 102 ~~i~~~~~~iifl~ 115 (462)
-.+.++++++++..
T Consensus 453 l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 453 LLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHhh
Confidence 77888888876643
No 220
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=94.17 E-value=0.17 Score=50.83 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHH
Q 012514 262 VGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSI 341 (462)
Q Consensus 262 l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~ 341 (462)
+.=.+-.|+.+.+= .+++++| -+.+|.+..+++.+..+... +...++.+-+
T Consensus 79 ilQ~~sS~~~G~~S----D~yGRkp-------vll~c~~~va~s~ll~~~S~------------------~F~afv~aR~ 129 (451)
T KOG2615|consen 79 ILQFISSPLWGCLS----DRYGRKP-------VLLACLIGVALSYLLWALSR------------------NFAAFVLARF 129 (451)
T ss_pred HHHHHhhhhhhhhh----hhhCchH-------HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 33445556666543 3444332 35577777777766665432 2223344456
Q ss_pred HHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhccc
Q 012514 342 ISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDH 394 (462)
Q Consensus 342 l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~ 394 (462)
+.|+.--.+++ .-+.+.+.++++.|+..|+....+.++|-.+|+++.+....
T Consensus 130 l~Gi~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 130 LGGIFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhhhccCchHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 66766666654 35889999999999999999999999999999988876653
No 221
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=94.08 E-value=1.4 Score=38.82 Aligned_cols=60 Identities=8% Similarity=0.237 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
.+.++|.-++.|+|+.+.+...-.++.+.+.++.+++..|+++.....+..+|+++...+
T Consensus 89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999988888888887765543
No 222
>PRK09669 putative symporter YagG; Provisional
Probab=93.66 E-value=0.29 Score=50.74 Aligned_cols=114 Identities=5% Similarity=-0.105 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHH
Q 012514 258 GLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLA 337 (462)
Q Consensus 258 ~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli 337 (462)
.+.-++-.+..|+.+.+.++.-.|.++ ...-+..|.+..+++++.+... .+. ......+|..
T Consensus 52 ~i~~i~dai~dp~~G~lsD~~~~r~Gr------rrp~il~~~~~~~i~~~l~f~~--------p~~----~~~~~~~~~~ 113 (444)
T PRK09669 52 LVVRVLDAVTDPLMGALVDRTRTRHGQ------FRPYLLWFAIPFGVVCLLTFYT--------PDF----GATGKIIYAC 113 (444)
T ss_pred HHHHHHHHcccceeeEeeecCCCCCCC------cchhHHHHHHHHHHHHHHHHhC--------CCC----CcchHHHHHH
Confidence 333444445556655554433222221 1224556777777766544321 000 0123456777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhc-CchhhhHHHHHHHHHHhHHHHHHHHHH
Q 012514 338 PQSIISGVADGFALVGLQEYFYDQV-PDSMRSLGIAFYLSVIGAANFLSSFLI 389 (462)
Q Consensus 338 ~~~~l~~~gEl~~~p~~~~~~~~~a-P~~~~g~~~g~~~l~~~~g~~lg~~l~ 389 (462)
..|++.+++--+..++-.++....+ +++.|+..++.-.....+|..+++.+.
T Consensus 114 ~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~ 166 (444)
T PRK09669 114 VTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA 166 (444)
T ss_pred HHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888777778877788888887 446788888877777777777776544
No 223
>PRK09528 lacY galactoside permease; Reviewed
Probab=93.46 E-value=0.12 Score=52.91 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNW-WNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~-fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
.+.++....+.+++.+...+....++.+.++++. +...+.. +....++|..+++.+.|++.+..||+..|.+.
T Consensus 315 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 315 PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 5556666777788887777777778788776432 1334434 55678899999999999999999999999987
Q ss_pred HHHHHHHHHHHH
Q 012514 103 TIVMAVSLLIFI 114 (462)
Q Consensus 103 ~i~~~~~~iifl 114 (462)
++..++..++.+
T Consensus 389 ~~~~~i~~~~~~ 400 (420)
T PRK09528 389 GGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHH
Confidence 776666554443
No 224
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=93.43 E-value=0.88 Score=47.51 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhccc
Q 012514 339 QSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDH 394 (462)
Q Consensus 339 ~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~ 394 (462)
.-++.|++--+++....+..+++.-+..+|.++|++....+++..+|+++.+....
T Consensus 394 ~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 394 FIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred hhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 34678888889999999999999999999999999999999999999988775553
No 225
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=93.34 E-value=0.98 Score=45.62 Aligned_cols=58 Identities=10% Similarity=-0.204 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
+.|.++...++.+++.....|...+.+.+..+ .|+..+|......++|..+|+.+.+.
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~ 150 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGK 150 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHH
Confidence 34545556677888888788877666665533 34454444454455666666555553
No 226
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=93.28 E-value=1.4 Score=44.53 Aligned_cols=86 Identities=12% Similarity=0.044 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccch
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSR 412 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~ 412 (462)
.+|++....+.++......+....++.+..+++.++.+.+.......+|..+|+.+...+. +..+.
T Consensus 97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~------------~~~gw-- 162 (390)
T TIGR02718 97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF------------GKFGQ-- 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCH--
Confidence 3455545555666677777777778888888888898888888888889998886554322 11111
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 012514 413 LDKFYWLLAALVAANLFVYVV 433 (462)
Q Consensus 413 l~~~f~~la~l~~~~~v~~~~ 433 (462)
..-|++.+++.++..+..+.
T Consensus 163 -~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 163 -RPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 22466677766665555433
No 227
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=93.00 E-value=1.2 Score=42.57 Aligned_cols=121 Identities=16% Similarity=0.178 Sum_probs=78.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 012514 291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLG 370 (462)
Q Consensus 291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~ 370 (462)
|..-..+|.++..+|+......-..+ ....+.|.+.....+.+.|........+.-..+.-|+ .||.+
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~~~~-----------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~v 132 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAVSGR-----------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTV 132 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc-----------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCce
Confidence 55566788888888887766543211 1123444444455677788888777777777788896 69999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514 371 IAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYS 439 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~ 439 (462)
.|+---..+++..+=+.+... .+++ +.+.|..+++....+..++.....|...
T Consensus 133 vgilk~~~GLSaai~t~i~~~-----------~f~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 133 VGILKGFFGLSAAIFTQIYSA-----------FFGD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred ehhhhHHHHhHHHHHHHHHHH-----------HcCC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 999998888888765544332 2222 2245677777766666555555555554
No 228
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=92.89 E-value=0.00012 Score=75.97 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh---ccchhhHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE---HVSWGAAD 99 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~---~~g~~~~F 99 (462)
+...+.++..+.++|.|+.-+....++.+..+++. |.....+...+.++|.+++.++...+.+ +.+|+..+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 57889999999999999999999999998875543 2466777888888998888776654433 34599888
Q ss_pred HHHHHHHHHHH
Q 012514 100 VIITIVMAVSL 110 (462)
Q Consensus 100 ~i~~i~~~~~~ 110 (462)
.++++..++.+
T Consensus 175 ~~~~~~~l~~~ 185 (451)
T PF00083_consen 175 IFGAIPSLLVL 185 (451)
T ss_pred ccccccccccc
Confidence 87766655443
No 229
>PRK10429 melibiose:sodium symporter; Provisional
Probab=92.39 E-value=1.3 Score=46.39 Aligned_cols=115 Identities=11% Similarity=0.021 Sum_probs=70.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh
Q 012514 256 VFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW 335 (462)
Q Consensus 256 ~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w 335 (462)
+..+..++-.+..|+.+.+-++.-.|+++ ...-+.+|.+..++++..+... .+. ......+|
T Consensus 47 i~~i~ri~dai~dp~~G~lsD~t~sr~Gr------rrp~il~g~i~~~i~~~llf~~--------p~~----~~~~~~~~ 108 (473)
T PRK10429 47 LFLVARIWDAINDPIMGWIVNNTRSRWGK------FKPWILIGTLANSVVLFLLFSA--------HLF----EGTAQYVF 108 (473)
T ss_pred HHHHHHHHHHHhhchheeehhcCCCCCCC------cchhHhhhhHHHHHHHHHHHcC--------CCC----CccHHHHH
Confidence 34444455555556665555432122221 1223557777777776555321 000 01123567
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhc-CchhhhHHHHHHHHHHhHHHHHHHHH
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQV-PDSMRSLGIAFYLSVIGAANFLSSFL 388 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~a-P~~~~g~~~g~~~l~~~~g~~lg~~l 388 (462)
.+..|++..++--+..+.-.++..+++ +++.|+...+.-.....+|..+.+.+
T Consensus 109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999 58899988887555556665555443
No 230
>PF13347 MFS_2: MFS/sugar transport protein
Probab=92.22 E-value=0.21 Score=51.52 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCc-hhhhHHHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPD-SMRSLGIA 372 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~-~~~g~~~g 372 (462)
-+.+|.++.++++..+...... . ........|+...|++..++--+....-.++..+.+|+ +.|....+
T Consensus 74 ~~l~g~i~~~~~~~llf~~~p~-----~-----~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~ 143 (428)
T PF13347_consen 74 WILIGAILLALSFFLLFSPPPA-----G-----LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSS 143 (428)
T ss_pred EeehhhHHHHHHHHHhhccccc-----h-----hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHH
Confidence 4558888888888777643100 0 01123566878889999999999999999999999995 68999998
Q ss_pred HHHHHHhHHHHHHHHHHh
Q 012514 373 FYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 373 ~~~l~~~~g~~lg~~l~~ 390 (462)
.-.+...+|+.+.+.+..
T Consensus 144 ~~~~~~~~g~~l~~~~~~ 161 (428)
T PF13347_consen 144 WRMIFSMIGSLLASFLAP 161 (428)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 888888888865555544
No 231
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=92.03 E-value=3.5 Score=43.12 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHH
Q 012514 261 AVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQS 340 (462)
Q Consensus 261 ~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~ 340 (462)
.+..++.+|.++.+-++..|| .++..-.+|.++-.+..++. .||.+. .
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk--------~~L~~~~~~~~l~~~~~~~~-----------------------~~~~~~-~ 119 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRK--------VVLLLPLFGTILPALCLLFQ-----------------------GYWFFL-L 119 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhh--------hhHHHHHHHHHHhHHHHHHH-----------------------HHHHhh-h
Confidence 567778888888877666655 23333334444444333321 255543 1
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
.=..-|-..+...+++++++.+.++.|....|+...+.+.+..+++.+.+.
T Consensus 120 ~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~ 170 (463)
T KOG2816|consen 120 LGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY 170 (463)
T ss_pred cccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 123345556677888999999999999999999999888888888777663
No 232
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.54 E-value=9.5 Score=37.22 Aligned_cols=88 Identities=13% Similarity=0.261 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHH
Q 012514 339 QSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW 418 (462)
Q Consensus 339 ~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~ 418 (462)
...++|++.-+..-..--.+..+.|++.-|.+-|....-+.+|-.+.+++++++. .+++ ++ ..++.||.
T Consensus 358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~---d~~g-~y-------~~le~ffl 426 (459)
T KOG4686|consen 358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA---DGDG-SY-------DNLEAFFL 426 (459)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee---cCCC-ch-------hhHHHHHH
Confidence 5578888888888888888999999999999888888878777777777766443 1111 11 13567788
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 012514 419 LLAALVAANLFVYVVVARR 437 (462)
Q Consensus 419 ~la~l~~~~~v~~~~~~~~ 437 (462)
....+++.+..+.+.+-|+
T Consensus 427 ~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 427 IIGLMALTSVGILFYLNKK 445 (459)
T ss_pred HHHHHHHHHHHHHhheecc
Confidence 7777777777666655443
No 233
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=90.85 E-value=1.3 Score=47.07 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=81.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 012514 253 PASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS 332 (462)
Q Consensus 253 ~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s 332 (462)
.+|..++......+..|+...+. +|++ -..-+.+|.+++++|++...+.. +
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~l~----~rfg-------~R~v~i~G~~v~~~g~~lssF~~------------------~ 133 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSALC----NRFG-------CRTVMIAGGLVAALGLLLSSFAT------------------S 133 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHHHH----hhcC-------chHHHHHHHHHHHHHHHHHHHHh------------------h
Confidence 46777887777778888876644 4542 33456789999999999888753 3
Q ss_pred hhhHHHH-HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 333 VFWLAPQ-SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 333 ~~wli~~-~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
+|.++.. .++.|+|-.++.......+... .++.|++++|+-....++|..+=+.+.+
T Consensus 134 i~~l~lt~gvi~G~G~~~~~~paiviv~~Y-F~kkR~lA~Gia~~GsG~G~~~~~~l~~ 191 (509)
T KOG2504|consen 134 LWQLYLTFGVIGGLGLGLIYLPAVVILGTY-FEKKRALATGIAVSGTGVGTVVFPPLLK 191 (509)
T ss_pred HHHHHHHHHHHhhccchhhhcchhhhhhhH-hHHHHHHHHhhhhccCCcceeeHHHHHH
Confidence 4444444 4888999999998888888855 4578999999999999998877666655
No 234
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=90.48 E-value=7.5 Score=40.14 Aligned_cols=101 Identities=6% Similarity=-0.067 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHH
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDK 415 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~ 415 (462)
+...-.+++..+.-..|++.|+.....=+...+...|+-.+ .|+..+..+....+ ...++. +.+++.-+ .+
T Consensus 362 v~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~---~gq~f~~~~~~~~~-~~~~~~--~~~~~~~~---~~ 432 (480)
T KOG2563|consen 362 VFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNL---SGQIFGVILVFIMG-ILAEDL--GPPGNTFP---AN 432 (480)
T ss_pred hhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEe---ehhHHHHHHHHHHH-HHhhcc--CCCCCCcc---ch
Confidence 33344677888888999999999998888888887776443 33444333332222 111211 22211111 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 012514 416 FYWLLAALVAANLFVYVVVARRYSYKNVQRSV 447 (462)
Q Consensus 416 ~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~~ 447 (462)
+.++..+++.+++-.+....|+|+++|++.
T Consensus 433 --i~~~~~~~l~~~lva~~r~~y~R~~~e~~~ 462 (480)
T KOG2563|consen 433 --IFLTVSALLGAILVAFFRPDYRRLRAEAGN 462 (480)
T ss_pred --hHhHHHHHHHHHHHhhhhhhHHhHhhhhcc
Confidence 335555566666677777888888777544
No 235
>PRK09848 glucuronide transporter; Provisional
Probab=89.81 E-value=3.3 Score=42.83 Aligned_cols=109 Identities=13% Similarity=-0.044 Sum_probs=59.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
.+..+..+.-.+..|+.+++.++..+|+++ ...-+.+|.+..+++...+..... . .......+
T Consensus 48 ~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr------~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~ 110 (448)
T PRK09848 48 TMLLLVRVFDAFADVFAGRVVDSVNTRWGK------FRPFLLFGTAPLMIFSVLVFWVPT-------D----WSHSSKVV 110 (448)
T ss_pred HHHHHHHHHHHHhhhhheeeeecCCCCCcC------chHHHHHHHHHHHHHHHHHHhCcC-------C----CCcchHHH
Confidence 445555667777777777766544322221 111223454444433333221110 0 00112456
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCc-hhhhHHHHHHHHHHhH
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPD-SMRSLGIAFYLSVIGA 380 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~-~~~g~~~g~~~l~~~~ 380 (462)
|....+++.+++.-+..+.-.+....++++ +.|+...+.-....++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~ 157 (448)
T PRK09848 111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL 157 (448)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 777788888999988888888877766655 4577766655443333
No 236
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=89.13 E-value=1.3 Score=45.50 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=61.4
Q ss_pred HHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHhhhhhccc------hhhHHH
Q 012514 28 FLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGL-CSGLLLGVTVVVYVQEHVS------WGAADV 100 (462)
Q Consensus 28 ~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~i-NiG~~i~~~~~~~l~~~~g------~~~~F~ 100 (462)
.++..+.++..|.+-.....++.+..|++.. .++-+++.... -+|..+|.+++|++.|++| |...|.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~------at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPELR------ATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCccch------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 3444568999999999999999999876542 45666666654 4999999999999998765 445667
Q ss_pred HHHHHHHHHHHHHHHc
Q 012514 101 IITIVMAVSLLIFIIG 116 (462)
Q Consensus 101 i~~i~~~~~~iifl~~ 116 (462)
++++..++..++|+..
T Consensus 379 v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 379 VFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777666666666654
No 237
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=88.91 E-value=13 Score=39.01 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=51.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHH
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLI 389 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~ 389 (462)
+...++..-++.|+..-+......-++...||++.||.+-.+.-+...+|..+|..+.
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 3445667889999999999999999999999999999999999999999999986554
No 238
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=88.02 E-value=17 Score=37.23 Aligned_cols=113 Identities=12% Similarity=0.004 Sum_probs=67.5
Q ss_pred CeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 012514 248 GFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKG 327 (462)
Q Consensus 248 g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~ 327 (462)
++.+.+++...+..+-++.-..+ .-.+..+..|+ .+.+...+++++..+-.+..++...
T Consensus 43 ~~~LS~~q~~ll~aiPil~Gall-Rl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~------------- 101 (417)
T COG2223 43 DFGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVT------------- 101 (417)
T ss_pred ccCCCHHHHHHHHHHHHHHhHHH-HHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 34477777665555555443322 22223333443 3455666788888888887776542
Q ss_pred CcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHH
Q 012514 328 SLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLS 385 (462)
Q Consensus 328 ~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg 385 (462)
..+.|+++..=++.|+|-. ....++..+...-||+.||.++|++- .-.+|..+.
T Consensus 102 --~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~ 155 (417)
T COG2223 102 --YPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVA 155 (417)
T ss_pred --CCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHH
Confidence 1233333333345555543 34567888999999999999999997 444444443
No 239
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=87.40 E-value=6.4 Score=40.80 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhc---CchhhhHH
Q 012514 294 RIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQV---PDSMRSLG 370 (462)
Q Consensus 294 ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~a---P~~~~g~~ 370 (462)
-|.+|.++.+++.+.++..... ..+........++.++|..+.....-+.+.+.+ |++ +|..
T Consensus 61 Y~~i~~~~~~~~~~~~~~~~~~--------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~l 125 (433)
T PF03092_consen 61 YMIIGWLLGAVSALVLALLPAS--------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDL 125 (433)
T ss_pred HHHHHHHHHHHHHHHHHhcccc--------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHH
Confidence 3567777776666655543210 112223334556778888888777776665555 555 8889
Q ss_pred HHHHHHHHhHHHHHHHHHHhh
Q 012514 371 IAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 371 ~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++..+....+|+.++..+.+.
T Consensus 126 qS~~~~~~~~G~lv~~~l~G~ 146 (433)
T PF03092_consen 126 QSFVWGVRSVGSLVGSLLSGP 146 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999998877664
No 240
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=85.43 E-value=9 Score=40.46 Aligned_cols=86 Identities=10% Similarity=0.176 Sum_probs=59.7
Q ss_pred cchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCcc
Q 012514 331 MSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNS 410 (462)
Q Consensus 331 ~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~ 410 (462)
-+.++.+..-++.|++..-....+...+.+..+++.|+.++.+ ....-.++.++..++..+.. +|
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------~W------- 233 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------DW------- 233 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------hH-------
Confidence 3566677778999999999999999999999999999999999 55554555554444443220 13
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q 012514 411 SRLDKFYWLLAALVAANLFVYVVV 434 (462)
Q Consensus 411 ~~l~~~f~~la~l~~~~~v~~~~~ 434 (462)
.++++..++.+++..+++++.
T Consensus 234 ---r~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 234 ---RWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcc
Confidence 445666666666555553333
No 241
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=83.69 E-value=18 Score=37.50 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=67.1
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 012514 289 IQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRS 368 (462)
Q Consensus 289 ~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g 368 (462)
++...|+..++++..+.++.....-.. + .+.....+..+..-++.+++..+...+.+.++...-|+
T Consensus 72 i~~~~Ri~~~lv~~~~~~~~~~~l~~~-------~---~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~---- 137 (437)
T TIGR00939 72 IPVTVRLLGGLVILLVVVILVMVLVKV-------Q---TSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST---- 137 (437)
T ss_pred cCccchhHHHHHHHHHHHHHHhheeee-------c---CCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH----
Confidence 366778888877666655554432110 0 01112233334455778899999999989888866553
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 012514 369 LGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVA 435 (462)
Q Consensus 369 ~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~ 435 (462)
+++.++..+++++.+++++ ..+.+....+. . +...+ -..||.+-+++.+++.+.|..+.
T Consensus 138 -~~~a~~~G~g~aGv~~s~~-~ii~~a~~~~~--~---~~~~~-a~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 138 -YSSAVMSGQGLAGVLTSLA-MILVKASGNDS--H---GLKKS-ALGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred -HHHHHHhcchhHHHHHHHH-HHHHHHhcCCc--c---chhhh-hhhHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666666544 22222211110 0 12221 23455555666666766666553
No 242
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=83.57 E-value=62 Score=33.98 Aligned_cols=53 Identities=8% Similarity=-0.024 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhHHH----HHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514 341 IISGVADGFALVGLQ----EYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD 393 (462)
Q Consensus 341 ~l~~~gEl~~~p~~~----~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~ 393 (462)
++.-.+|+.-+.... .|+.++.-.+.-.+..+++.+...++..++|.+...+.
T Consensus 152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557788887776554 88888889999999999999999999999998876554
No 243
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=82.89 E-value=0.31 Score=52.00 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=2.8
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc----------
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH---------- 92 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~---------- 92 (462)
-...+++|-++.++|..-+.+.-.+++=|-.++++ ..-+..++|....+|..+|.++++..-+.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 36778888889999998877777776666544332 25688899999999999999998865321
Q ss_pred -----------c-chhhHHHHHHHHHHHHHHHHHHcccceee
Q 012514 93 -----------V-SWGAADVIITIVMAVSLLIFIIGRPFYRY 122 (462)
Q Consensus 93 -----------~-g~~~~F~i~~i~~~~~~iifl~~~~~~~~ 122 (462)
. .|+++|.++++..++..+-++..-|++++
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp ------------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 2 49999999888888777766665555543
No 244
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=81.43 E-value=2.9 Score=43.54 Aligned_cols=129 Identities=11% Similarity=0.074 Sum_probs=89.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh--hh
Q 012514 291 ILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSM--RS 368 (462)
Q Consensus 291 ~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~--~g 368 (462)
..+-+.+|-++.++|-++++..+. .+...+....+++++|--+.-|...++..++=|++- |-
T Consensus 91 ~~~tI~lGail~~iGh~~L~~~~~----------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD 154 (498)
T COG3104 91 TRRTIVLGAILMAIGHLVLAISSV----------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD 154 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccc----------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccC
Confidence 455688999999999999886320 123344557788889999999988888888777652 44
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 012514 369 LGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQRSVA 448 (462)
Q Consensus 369 ~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~~~ 448 (462)
...++++....+|+++++.+...+. ++.+ ...-|.+.++-+.+.+++|++..|+++..-..++..
T Consensus 155 ~gFt~fY~~iNiGsl~~p~i~~~~~------------~~~g---~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~ 219 (498)
T COG3104 155 GGFTLFYMGINIGSLIAPIITGLLA------------INYG---WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPN 219 (498)
T ss_pred CCccEEEEEeehHHHHHHHHHHHHH------------HhhC---HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCcc
Confidence 4567777888899999988876443 2222 122366677777888888888888887654444443
Q ss_pred cc
Q 012514 449 VA 450 (462)
Q Consensus 449 ~~ 450 (462)
+.
T Consensus 220 ~~ 221 (498)
T COG3104 220 PL 221 (498)
T ss_pred ch
Confidence 33
No 245
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=81.39 E-value=53 Score=33.19 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=64.6
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhH
Q 012514 290 QILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSL 369 (462)
Q Consensus 290 s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~ 369 (462)
++.+-+..++++.++|.++=.. .+.+-++....+.+.|-...++...+++-+.-|++. +.
T Consensus 75 g~er~l~~~Llli~~G~~iR~~-------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~ 134 (395)
T COG2807 75 GEERSLFLALLLIAAGILIRSL-------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GL 134 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hh
Confidence 4566677777777766554211 134456667789999999999999999999999876 68
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcc
Q 012514 370 GIAFYLSVIGAANFLSSFLITVVD 393 (462)
Q Consensus 370 ~~g~~~l~~~~g~~lg~~l~~~~~ 393 (462)
+||+|..+.++|..+++.+.-.+.
T Consensus 135 mtglYs~sl~~~aaLaa~lavpla 158 (395)
T COG2807 135 MTGLYSTSLGAGAALAAALAVPLA 158 (395)
T ss_pred HHhHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999999987765443
No 246
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=79.52 E-value=25 Score=32.33 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=59.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhH
Q 012514 257 FGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWL 336 (462)
Q Consensus 257 ~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wl 336 (462)
.-.|.+.+.+..+...++.++..+|+ .+..++..+++...++....+.............+ +.+........
T Consensus 105 lG~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~-~~~~~~~~~~~ 176 (205)
T PF01891_consen 105 LGANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG-DYPWMALVQAY 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccHHHHHHHH
Confidence 45677777777777788788766653 23445555555555555444433322111111100 00112233345
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 012514 337 APQSIISGVADGFALVGLQEYFYDQVPD 364 (462)
Q Consensus 337 i~~~~l~~~gEl~~~p~~~~~~~~~aP~ 364 (462)
.+.+.++++.|.+++.....+..+.-|+
T Consensus 177 ~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 177 LPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6788889999999999999999988885
No 247
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=78.23 E-value=17 Score=37.42 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=21.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHH
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVL 279 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~ 279 (462)
+...+.|++.-++++|+++.+-+++.
T Consensus 46 G~i~s~~~~~~l~~qp~~G~i~Dklg 71 (412)
T PF01306_consen 46 GIIFSAGSLFALLAQPVYGFISDKLG 71 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhHHHhcchhh
Confidence 46788899999999999988766554
No 248
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=78.13 E-value=0.03 Score=57.95 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=51.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
+.++++..-++.|+|-....+....++.+.+|++.||.+.+++.....+|..++..+..
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~ 159 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGY 159 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56667777789999999999999999999999999999999999999999988866543
No 249
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=78.09 E-value=4.2 Score=39.55 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc---hhhHHHHHH
Q 012514 27 FFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS---WGAADVIIT 103 (462)
Q Consensus 27 ~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g---~~~~F~i~~ 103 (462)
=|+++.+.++...+.....-++++...+|+. ...+|...|-.-|+|-.+.+++++.+.++-| |--+|.+..
T Consensus 355 Py~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 3677788888888777777888888876532 5789999999999999999999999987643 545555544
Q ss_pred HHHHHHH
Q 012514 104 IVMAVSL 110 (462)
Q Consensus 104 i~~~~~~ 110 (462)
..|.+-.
T Consensus 429 ~~~aL~s 435 (459)
T KOG4686|consen 429 GLMALTS 435 (459)
T ss_pred HHHHHHH
Confidence 5554433
No 250
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=74.68 E-value=87 Score=32.81 Aligned_cols=100 Identities=8% Similarity=0.067 Sum_probs=69.7
Q ss_pred cchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCch-hhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCc
Q 012514 331 MSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDS-MRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMN 409 (462)
Q Consensus 331 ~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~-~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n 409 (462)
.+..|....|.+++++--++...--++...+.++. .|....+..+....+|+.+...+...+.. ++.++ |
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~--------~~g~~-~ 180 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK--------LFGGG-D 180 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCC-c
Confidence 45667777999999999999999888888888764 88899999999999998888777654432 22211 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514 410 SSRLDKFYWLLAALVAANLFVYVVVARRYSYK 441 (462)
Q Consensus 410 ~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~ 441 (462)
+..-|+....+++++..+.++++.+.-|.|
T Consensus 181 --~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 181 --KALGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 112345555566666666666666554444
No 251
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=70.80 E-value=6.9 Score=40.08 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhhHHHHHHHH
Q 012514 27 FFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHV-SWGAADVIITIV 105 (462)
Q Consensus 27 ~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i~~i~ 105 (462)
+++.-+++++..|+..+..-++.++..++++. .++|.+|-..--.++++||.+.+.+.+.. +-+.++..-.+.
T Consensus 344 f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~------~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl 417 (438)
T COG2270 344 FWILGLLVGTSLGGAQASSRSYLARLVPKGKE------GRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL 417 (438)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhCCCccc------cceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 44445689999999999999999999987653 57999999999999999999999887643 346777665666
Q ss_pred HHHHHHHHHH
Q 012514 106 MAVSLLIFII 115 (462)
Q Consensus 106 ~~~~~iifl~ 115 (462)
+.+++++++.
T Consensus 418 l~iGl~~L~~ 427 (438)
T COG2270 418 LLIGLLLLLR 427 (438)
T ss_pred HHhhHhhEEe
Confidence 6667665543
No 252
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.86 E-value=1.2e+02 Score=30.19 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhccccc---cc-CC--CccccCCCccchh
Q 012514 340 SIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVT---DK-SG--RSWFGKDMNSSRL 413 (462)
Q Consensus 340 ~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~---~~-~~--~~w~~~~~n~~~l 413 (462)
.+.+++.+...+++-+-|..+.=|.-++++.. ..++...+=.++ .+++-.. .. ++ ..++|++.. -
T Consensus 119 ~F~LAivdc~SnVtFLPFMs~lpp~fL~afFv-----G~GLSaLlPsll-aLaQGtg~~~C~~n~t~~r~fP~rFs---~ 189 (439)
T KOG4255|consen 119 LFGLAIVDCTSNVTFLPFMSQLPPAFLNAFFV-----GMGLSALLPSLL-ALAQGTGRLECDLNGTPGRPFPPRFS---V 189 (439)
T ss_pred HHHHHHHHhhccchhhhhhhhCChHHHHHHHH-----hccHHHHHHHHH-HHHccCCceeecCCCCCCCCCCCCcc---H
Confidence 35678899999999999999998877776643 344444443332 3332111 00 11 123554443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514 414 DKFYWLLAALVAANLFVYVVVARRYS 439 (462)
Q Consensus 414 ~~~f~~la~l~~~~~v~~~~~~~~~~ 439 (462)
..||+.+.+++.++.+.|..+-|--+
T Consensus 190 s~FFl~l~~~~~~alaAF~vL~r~~~ 215 (439)
T KOG4255|consen 190 STFFLALFAFTCAALAAFFVLYRLGA 215 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46888888888877777777665443
No 253
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=67.67 E-value=55 Score=33.56 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=54.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 012514 289 IQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRS 368 (462)
Q Consensus 289 ~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g 368 (462)
++...|+.+..+++++|+++.++.+ ++++-+...++.+++-.+--.+-+.+....-+
T Consensus 86 v~y~~Ri~~~~~l~~~g~l~va~~~------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~----- 142 (402)
T PF02487_consen 86 VPYWIRILICVALSAAGMLLVAFSP------------------SVWVRLLGVVLASLSSGLGEVTFLSLTHFYGK----- 142 (402)
T ss_pred ccchHHHHHHHHHHHHHHhheeecc------------------chhHHHHHHHHHhhhhhhhHHHHHHHHHhcCc-----
Confidence 3678899999999999998876532 23443445566666666666666666554432
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q 012514 369 LGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 369 ~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
...+.|...+|.|+.+|+..-.
T Consensus 143 ~~l~~wssGTG~aGl~Ga~~y~ 164 (402)
T PF02487_consen 143 SSLSAWSSGTGGAGLVGALYYL 164 (402)
T ss_pred cccccccCCcChhhHHHHHHHH
Confidence 3568888889999988876543
No 254
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=67.19 E-value=14 Score=38.58 Aligned_cols=77 Identities=12% Similarity=-0.069 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-----hhhHHHH
Q 012514 27 FFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS-----WGAADVI 101 (462)
Q Consensus 27 ~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g-----~~~~F~i 101 (462)
.....++..++.|..-.....+..+..+++. ....|+++....|+|..+++.+++++.+..| |+..+.+
T Consensus 354 ~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~ 427 (468)
T TIGR00788 354 VLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL 427 (468)
T ss_pred eeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH
Confidence 3344556677777777777888888776543 2678999999999999999999999988777 6555554
Q ss_pred HHHHHHHH
Q 012514 102 ITIVMAVS 109 (462)
Q Consensus 102 ~~i~~~~~ 109 (462)
..+..+..
T Consensus 428 i~i~~~~~ 435 (468)
T TIGR00788 428 ILGHSLAP 435 (468)
T ss_pred HHHHHHHH
Confidence 33333333
No 255
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=66.66 E-value=1.6e+02 Score=30.24 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=55.0
Q ss_pred CcchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHH
Q 012514 20 RKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAAD 99 (462)
Q Consensus 20 ~~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F 99 (462)
.+.+...+++-..++++|.|+ -|...++-+.-.+.... -+..... +.|. +|..+...+.=.+..+.||+|..
T Consensus 162 ~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r----~~~~V~~-~~wa--ig~v~ea~law~vm~~~gwr~~l 233 (528)
T KOG0253|consen 162 ASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHR----WLLTVMS-FFWA--IGQVFEALLAWGVMSNFGWRYLL 233 (528)
T ss_pred CCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCC----CcchhHH-HHHH--HHHHHHHHHHHHHHHhhhHHHHH
Confidence 344556677777889999999 88888888777765431 2233333 4554 56666666655555677886544
Q ss_pred H-HHHHHHHHHHHHHHH
Q 012514 100 V-IITIVMAVSLLIFII 115 (462)
Q Consensus 100 ~-i~~i~~~~~~iifl~ 115 (462)
. .....|+.+...++.
T Consensus 234 ~~~~~pl~~~a~f~~w~ 250 (528)
T KOG0253|consen 234 FTSSTPLMFAARFLVWV 250 (528)
T ss_pred HHHHhHHHHHHHHHhhc
Confidence 4 445556655554443
No 256
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=66.04 E-value=62 Score=33.72 Aligned_cols=163 Identities=10% Similarity=0.042 Sum_probs=93.8
Q ss_pred HHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCcc---ccchhhHHHHHHHHHHHHHHHHHHHhhhcC
Q 012514 208 KLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPPA---SVFGLTAVGMIISVTFYEKILVPVLRRATG 284 (462)
Q Consensus 208 k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~~---~~~~~n~l~iill~pi~~~~~~p~~~r~~~ 284 (462)
.+++++..+..+.=+.|....|..+-+.++ +| +|-. ..+-..|+.=++.+|+.+..-+++-.|+++
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-------lG----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-------LG----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-------cC----CCcccccccccccccccceeccccccccccccccccc
Confidence 455566666667777788776665555332 23 4433 345666888889999998887777666654
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 012514 285 NERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPD 364 (462)
Q Consensus 285 ~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~ 364 (462)
+ +| =|..|.+..+++....+...-......++.. ....+-.+-..+..+.++=++-=+..-..=++..+++-.
T Consensus 101 R----RP--fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~-~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~ 173 (498)
T KOG0637|consen 101 R----RP--FILAGSLLIAVSLFLIGYAADIGLLLGDNER-KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG 173 (498)
T ss_pred c----cc--hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc-cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC
Confidence 2 12 3557777777777765554322111111100 001122233333444455555534444445666666554
Q ss_pred hhhhH-HHHHHHHHHhHHHHHHHHH
Q 012514 365 SMRSL-GIAFYLSVIGAANFLSSFL 388 (462)
Q Consensus 365 ~~~g~-~~g~~~l~~~~g~~lg~~l 388 (462)
.-|-. +.+.+-+..++||.+|-.+
T Consensus 174 d~~~~~Ans~f~~f~avGnvLGY~~ 198 (498)
T KOG0637|consen 174 DAKKTRANSVFSFFMAVGNVLGYAL 198 (498)
T ss_pred hhhhhccchhHHHHHHhcceeeeec
Confidence 44444 9999999999999998444
No 257
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=65.46 E-value=13 Score=38.70 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=93.4
Q ss_pred eCccccchhhHHH---HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 012514 251 IPPASVFGLTAVG---MIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKG 327 (462)
Q Consensus 251 ip~~~~~~~n~l~---iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~ 327 (462)
+|+.....+|... .++.+.+++++=+++.||+ -++.-++++.+|-++.+.-. .+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~-----------vYG~~liImIi~t~~~~~s~--------~~---- 137 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK-----------VYGKELIIMIICSALSGLSV--------GT---- 137 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-----------hhhHHHHHHHHHHHHhccCC--------CC----
Confidence 7888777777654 4566677777655555442 34455555555555333211 10
Q ss_pred Ccccc-hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccC
Q 012514 328 SLSMS-VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGK 406 (462)
Q Consensus 328 ~~~~s-~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~ 406 (462)
..+.+ .+|+...-+++|+|--==.|.+-......|-++-||..+++.+.++++|...|+++.-.+-..-++ -+++
T Consensus 138 ~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~----~~~~ 213 (538)
T KOG0252|consen 138 TSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEK----IFNG 213 (538)
T ss_pred CCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhc----cCCC
Confidence 11222 346666669999999999999999999999999999999999999999888887665433211110 1111
Q ss_pred CCccchhHHHHHHHHHHHHH
Q 012514 407 DMNSSRLDKFYWLLAALVAA 426 (462)
Q Consensus 407 ~~n~~~l~~~f~~la~l~~~ 426 (462)
.-...+++..|=+.-.++++
T Consensus 214 ~~~~~~ld~vWRl~~glg~v 233 (538)
T KOG0252|consen 214 PSTYPHLDGVWRIIFGLGAV 233 (538)
T ss_pred CCCchHHHHHHHHHHHHHHH
Confidence 11123678777655544444
No 258
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=61.88 E-value=86 Score=31.13 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhh-----hcccCCCC--CC--
Q 012514 258 GLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLG-----VVEENPTK--GS-- 328 (462)
Q Consensus 258 ~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~-----~~~~~g~~--~~-- 328 (462)
-.|.+.+.+..++..+++++..+|+. | +....+..+++-..++....++....... ..+.+|.. ..
T Consensus 107 GaN~l~ma~~~~~v~y~iyr~~~~~~--~---~~~~~~~~~f~gg~l~i~~~al~~al~l~~~~~~~~~~~g~~~~~~~~ 181 (322)
T PRK07331 107 GANCFNMAFIMPFVGYYIYKFIKKWT--K---SKKGEYIGAFIGGYIGINVAALFAAIEFGLQPLLFKDASGLPLYSPYP 181 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCccccccch
Confidence 45666555666777778888776642 1 22233333444444444443333221110 01112200 00
Q ss_pred cccchhhHHHHHHHH-HHHHHHHhhHHHHHHhhhcCchh
Q 012514 329 LSMSVFWLAPQSIIS-GVADGFALVGLQEYFYDQVPDSM 366 (462)
Q Consensus 329 ~~~s~~wli~~~~l~-~~gEl~~~p~~~~~~~~~aP~~~ 366 (462)
......-+.+..+.. ++.|.++......++.+..|+-.
T Consensus 182 ~~~~~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 182 LSVTIPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 111222355666776 99999999999999999988765
No 259
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=61.02 E-value=2.1e+02 Score=29.57 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=40.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++++-..-++.|++-.. -+.-+++++...|++.--.+.+..-.+.-+|..+|+++..+.
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQll 152 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLL 152 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455654444555555443 456678999999998877888777777777777777766644
No 260
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=58.84 E-value=25 Score=33.65 Aligned_cols=79 Identities=13% Similarity=0.233 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHH
Q 012514 339 QSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYW 418 (462)
Q Consensus 339 ~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~ 418 (462)
.=.+++.|-++.-| -+|...+|+-.+.++..+.+.|...+-+ +|+..+-...+....-+
T Consensus 61 gG~lW~~gN~~~vp------------ii~~iGLglg~liW~s~n~l~Gw~~grf---------GlFg~~~~~~~~~~Ln~ 119 (254)
T PF07857_consen 61 GGALWATGNILVVP------------IIKTIGLGLGMLIWGSVNCLTGWASGRF---------GLFGLDPQVPSSPWLNY 119 (254)
T ss_pred hhhhhhcCceeehh------------HhhhhhhHHHHHHHHHHHHHHHHHHhhc---------eeccccccccchhHHHH
Confidence 33566666665544 4566667777777777777766665522 24431111111122223
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 012514 419 LLAALVAANLFVYVVVARRY 438 (462)
Q Consensus 419 ~la~l~~~~~v~~~~~~~~~ 438 (462)
+-.++.+++.++|.++-..-
T Consensus 120 ~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 120 IGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHheeeecCCC
Confidence 34456666667776655444
No 261
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=57.90 E-value=15 Score=37.33 Aligned_cols=104 Identities=10% Similarity=0.090 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHH-hHHHHHHHHHHhhcccccccCCCccccCCC-c---c
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVI-GAANFLSSFLITVVDHVTDKSGRSWFGKDM-N---S 410 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~-~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~-n---~ 410 (462)
.+.+|.+.+.----...++++|.++.||+...|.+|.+..--. --|+.-+.++..+++-.+-++= -...|. + +
T Consensus 372 ~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C--~~~t~~~~c~~~ 449 (510)
T KOG3574|consen 372 LITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQC--VLATNKVTCITK 449 (510)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeec--cccccceeeecc
Confidence 3447788887777888999999999999999999999877444 4455566666666664442210 000000 0 0
Q ss_pred ----------c----hhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 012514 411 ----------S----RLDKFYWLLAALVAANLFVYVVVARRYSYK 441 (462)
Q Consensus 411 ----------~----~l~~~f~~la~l~~~~~v~~~~~~~~~~~~ 441 (462)
+ ..|-||..-.+..++..+.+.++.++.++.
T Consensus 450 ~~~~~c~~l~gtc~~~~DGYyi~s~ici~ig~i~~~~~~~ki~~L 494 (510)
T KOG3574|consen 450 AFPQLCLALGGTCLIARDGYYITSIICIVIGFIWFGLLKPKIKYL 494 (510)
T ss_pred hHHHHHHHhcCEEEEEecceEEeeehhhhHHHHHHHHHHHHHHHH
Confidence 0 023466655566666666777777777776
No 262
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=57.34 E-value=1.6e+02 Score=27.61 Aligned_cols=35 Identities=6% Similarity=0.061 Sum_probs=28.3
Q ss_pred hhhHHHHHHHH-HHHHHHHhhHHHHHHhhhcCchhh
Q 012514 333 VFWLAPQSIIS-GVADGFALVGLQEYFYDQVPDSMR 367 (462)
Q Consensus 333 ~~wli~~~~l~-~~gEl~~~p~~~~~~~~~aP~~~~ 367 (462)
..-+.+..+.. +++|.++.....+++.+..|+++-
T Consensus 183 ~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~l 218 (230)
T PRK11909 183 IPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENLL 218 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHh
Confidence 34456677887 999999999999999999776654
No 263
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=57.28 E-value=45 Score=26.71 Aligned_cols=18 Identities=11% Similarity=0.528 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHhHHHHHH
Q 012514 368 SLGIAFYLSVIGAANFLS 385 (462)
Q Consensus 368 g~~~g~~~l~~~~g~~lg 385 (462)
|...++-.++.++|....
T Consensus 28 GfslS~L~~slgv~Q~~~ 45 (97)
T PF08611_consen 28 GFSLSYLTASLGVGQFFI 45 (97)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566666667777654
No 264
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=55.42 E-value=48 Score=30.51 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhhc--cchhhHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNS-GLCSGLLLGVTVVVYVQEH--VSWGAAD 99 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~-~iNiG~~i~~~~~~~l~~~--~g~~~~F 99 (462)
....+.+...+.+++.|...|...++..+.+++ . + .+...+++... ..++|..+++.+.+.+... .+|+..|
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-T---ERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF 167 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 356666666678899999999999999999886 2 1 12456667666 5778888888777766543 5777766
Q ss_pred HHHHHHH
Q 012514 100 VIITIVM 106 (462)
Q Consensus 100 ~i~~i~~ 106 (462)
.+.....
T Consensus 168 ~~~~~~~ 174 (338)
T COG0477 168 LLAALLG 174 (338)
T ss_pred HHHHHHH
Confidence 5544333
No 265
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.47 E-value=1.6e+02 Score=30.78 Aligned_cols=63 Identities=10% Similarity=0.208 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHV 395 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~ 395 (462)
-+.....=+++|+|-.+.+...=+..++.++++-+....++.+.....+..+|+.+...+...
T Consensus 102 ~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~ 164 (461)
T KOG3098|consen 102 SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQF 164 (461)
T ss_pred hHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEe
Confidence 445555669999999999999999999999999999999999999999999998877655543
No 266
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=52.16 E-value=46 Score=33.44 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=66.5
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHhhhhhcc
Q 012514 15 MCLEPRKVHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWN-SGLCSGLLLGVTVVVYVQEHV 93 (462)
Q Consensus 15 ~c~~~~~~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY-~~iNiG~~i~~~~~~~l~~~~ 93 (462)
.|..-...+.+.+++|.++-++++.....+-.+-...+..+.+-++ +....-|+.-- +.+.+-++.+.+++-++.+..
T Consensus 112 scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~ 190 (354)
T PF05631_consen 112 SCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWF 190 (354)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence 4555555668999999999999999999888887766655443211 12334454443 333345566666666666665
Q ss_pred ch--hhHHHHHHHHHHHHHHHHHH
Q 012514 94 SW--GAADVIITIVMAVSLLIFII 115 (462)
Q Consensus 94 g~--~~~F~i~~i~~~~~~iifl~ 115 (462)
+. ...|..+.+..+++.++...
T Consensus 191 ~~g~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 191 GFGPVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHh
Confidence 54 67899988888888775544
No 267
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=50.98 E-value=36 Score=35.57 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=50.9
Q ss_pred chhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH
Q 012514 44 SLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLL 111 (462)
Q Consensus 44 ~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~~~~i 111 (462)
.+..+.+..|-..+.....-.+..-+.-+.+-|+|-++|.++.||+.|.+|=.-.++...+.|+++.+
T Consensus 62 lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~ 129 (538)
T KOG0252|consen 62 LVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA 129 (538)
T ss_pred HHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence 34566666666544110011134456778899999999999999999999999999999999999887
No 268
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=49.69 E-value=3.3e+02 Score=28.59 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHH-HHHhHHHHHHHHHHh
Q 012514 339 QSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYL-SVIGAANFLSSFLIT 390 (462)
Q Consensus 339 ~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~-l~~~~g~~lg~~l~~ 390 (462)
+.++.-.++=-..=+.-|.++..-+++.|...-++.= +..-+|-..|+.+.+
T Consensus 382 ~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~ 434 (472)
T TIGR00769 382 QNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQ 434 (472)
T ss_pred HHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHH
Confidence 5556666666667777899999999999988877654 344466666655433
No 269
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=47.29 E-value=3e+02 Score=28.56 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHH
Q 012514 297 IGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEY 357 (462)
Q Consensus 297 iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~ 357 (462)
-|+++.++.|+...+.|...+ ..+++. ||++.|++-++..-..+++
T Consensus 300 YgiLFI~LTF~~fflfE~~~~-----------~~iHpi----QY~LVGlAl~lFYlLLLSl 345 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSK-----------LRIHPI----QYLLVGLALVLFYLLLLSL 345 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------CcccHH----HHHHHHHHHHHHHHHHHHH
Confidence 578888999999999997532 133332 7777777776666555554
No 270
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=47.13 E-value=3.4e+02 Score=27.92 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHH
Q 012514 338 PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFY 417 (462)
Q Consensus 338 ~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f 417 (462)
...++.++|.....-.-+..+...-|+-.++.+.| +++++.+.+++. ++.+.. .++.+.+. ..||
T Consensus 122 ~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G-----~a~aG~l~Sl~~-i~tka~--------~~~~~~sA-~~yF 186 (406)
T KOG1479|consen 122 IIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSG-----QALAGTLTSLLR-ILTKAA--------FSDSRTSA-LIYF 186 (406)
T ss_pred HHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhc-----chhHhHHHHHHH-HHHHHh--------cCCCCcee-ehhH
Confidence 45567788888888777777777766666666544 444444443332 222111 11222211 2456
Q ss_pred HHHHHHHHHHHHHHH
Q 012514 418 WLLAALVAANLFVYV 432 (462)
Q Consensus 418 ~~la~l~~~~~v~~~ 432 (462)
.+-.++.+++.+.|.
T Consensus 187 ~~s~~~~llC~i~y~ 201 (406)
T KOG1479|consen 187 ITSTVILLLCFVLYL 201 (406)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666677777777
No 271
>PRK08319 cobalt transport protein CbiM; Validated
Probab=46.83 E-value=2.5e+02 Score=26.25 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhcCchhh
Q 012514 337 APQSIISGVADGFALVGLQEYFYDQVPDSMR 367 (462)
Q Consensus 337 i~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~ 367 (462)
.+.+..++++|.+++.....+..+.-|+-.+
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~ 213 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLV 213 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHh
Confidence 4556779999999999999999999998765
No 272
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=44.55 E-value=4e+02 Score=28.02 Aligned_cols=53 Identities=13% Similarity=-0.038 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhHH----HHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcc
Q 012514 341 IISGVADGFALVGL----QEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVD 393 (462)
Q Consensus 341 ~l~~~gEl~~~p~~----~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~ 393 (462)
++.-.+|++-+... .+++.+....+.-.+.-++..+...+|..+|+.+...+.
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446677666444 489999999999999999999999999999998877654
No 273
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=43.33 E-value=2.4e+02 Score=26.19 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=54.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc----
Q 012514 257 FGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS---- 332 (462)
Q Consensus 257 ~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s---- 332 (462)
.-.|.+.+.+..+...+.+++..+|++. | ....-+..|.+-..++.+..++ |.- ..+.... .+...+
T Consensus 108 LG~N~l~m~~~~~~~~~~~~~~~~~~~l-~---~~v~~f~~gf~~~~l~~~~~~~-~l~-l~~~~~~---~~~~~~~~~~ 178 (214)
T TIGR00123 108 LGANGFSMGVIGPFVGWIVYKLACRAGL-R---RDVAVFLAAMLGDLATYVVTSV-QLA-LAFPIPH---AGFTGSVVKF 178 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-c---hHHHHHHHHHHHHHHHHHHHHH-HHH-HhCCCcc---cchHHHHHHH
Confidence 3457777777778888888888776421 1 1122222333333333232222 110 0000000 000011
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSM 366 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~ 366 (462)
.....+.++..++.|.++......++.+..|+-.
T Consensus 179 ~~~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 179 MGIFAYTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 2233355567899999999999999999998754
No 274
>PRK11715 inner membrane protein; Provisional
Probab=42.16 E-value=4.2e+02 Score=27.56 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHH
Q 012514 297 IGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEY 357 (462)
Q Consensus 297 iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~ 357 (462)
-|+++.++.|+...+.|.... ..+++. ||.+.|++-++..-..+++
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~-----------~~iHpi----QYlLVGlAl~lFYLLLLSl 351 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKK-----------LRIHPV----QYLLVGLALVLFYLLLLSL 351 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----------ceecHH----HHHHHHHHHHHHHHHHHHH
Confidence 588899999999999987422 133332 7777777777766665554
No 275
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=41.77 E-value=17 Score=28.21 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhhcccccccccccccccCCCCCC
Q 012514 424 VAANLFVYVVVARRYSYKNVQRSVAVADCYQGDR 457 (462)
Q Consensus 424 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (462)
.++.++.|++..+.-+|+..|...-.++...+|+
T Consensus 9 v~~~~i~yf~~~rpqkk~~k~~~~m~~~Lk~Gd~ 42 (82)
T PF02699_consen 9 VIIFVIFYFLMIRPQKKQQKEHQEMLASLKPGDE 42 (82)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTGGG-------
T ss_pred HHHHHHHhhheecHHHHHHHHHHHHHHcCCCCCE
Confidence 3445566666777767777777777788888887
No 276
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=40.49 E-value=1.4e+02 Score=30.68 Aligned_cols=156 Identities=8% Similarity=0.152 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHHHHHH
Q 012514 263 GMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAPQSII 342 (462)
Q Consensus 263 ~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~~~~l 342 (462)
.=++..|++|.+..+-+-| .+..=.+....+|.++..++..+--.+ ..|| ..+ ++-.+...+++
T Consensus 79 LKllWaPiVDs~y~k~~Gr----rksWvvp~q~llG~~mllLs~~v~~~~--------g~ng---~~p-~v~~lt~~f~L 142 (510)
T KOG3574|consen 79 LKLLWAPIVDSVYSKRFGR----RKSWVVPCQYLLGLFMLLLSYLVDRGL--------GGNG---GLP-NVVALTLLFLL 142 (510)
T ss_pred HHHHHHhhhHHHHHHhhcc----ccceeeehHHHHHHHHHHHhhCCCccc--------ccCC---CCc-chHHHHHHHHH
Confidence 4467788888765432222 123346667778887777665432111 1111 111 11112223344
Q ss_pred HHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccC-CCccccC-CCccc--hhHHHHH
Q 012514 343 SGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKS-GRSWFGK-DMNSS--RLDKFYW 418 (462)
Q Consensus 343 ~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~-~~~w~~~-~~n~~--~l~~~f~ 418 (462)
+-+.-..-.+..-..+-++--++--|.+..........|.++|..+.-... +.| .+.++.+ ..+++ .+..|+|
T Consensus 143 LnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~---s~dF~N~y~rs~P~~~g~ItL~gy~~ 219 (510)
T KOG3574|consen 143 LNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALE---SPDFCNTYLRSIPLDQGFITLAGYLW 219 (510)
T ss_pred HHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEec---ChhhhhHHHhcCcCccceEEhhHHHH
Confidence 444444444444445545444455567777677777777777754432211 110 0011111 12222 2556677
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 012514 419 LLAALVAANLFVYVVVARR 437 (462)
Q Consensus 419 ~la~l~~~~~v~~~~~~~~ 437 (462)
+-|.+.+++..+-.++-+.
T Consensus 220 fwg~~~~vat~Lv~~~kke 238 (510)
T KOG3574|consen 220 FWGALFIVATTLVALLKKE 238 (510)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 7777776666555554433
No 277
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=39.85 E-value=16 Score=29.89 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhhcccccccccccccccCCCCCC
Q 012514 423 LVAANLFVYVVVARRYSYKNVQRSVAVADCYQGDR 457 (462)
Q Consensus 423 l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (462)
+.++.++.|+++.|.-+|+..|.+....+...+||
T Consensus 24 lvii~~i~yf~~~RpqkK~~k~~~~~~~~Lk~Gd~ 58 (106)
T PRK05585 24 LVVFFAIFYFLIIRPQQKRQKEHKKMLSSLAKGDE 58 (106)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCE
Confidence 34444556677777777777777777778888887
No 278
>PRK06265 cobalt transport protein CbiM; Validated
Probab=39.54 E-value=3e+02 Score=25.12 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhh--
Q 012514 258 GLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFW-- 335 (462)
Q Consensus 258 ~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~w-- 335 (462)
-.|.+...+-.++...+.++..||. +..+...|++-..++....+........... ..+....+
T Consensus 101 G~N~l~m~~p~~~~~~~~~~~~~~~--------~~~~~~~~f~~~~l~v~~~~l~~~~~l~l~~------~~~~~~~~~~ 166 (199)
T PRK06265 101 GVNTLNMALPAVLAGYLFRKLLRRT--------PPPRGLAAFLAGALAVFLAALLCALELALSG------GFPFVPAAKL 166 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHcc------cccHHHHHHH
Confidence 3455555544455555555554431 2245556666666666555444321111111 01111111
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhh
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMR 367 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~ 367 (462)
.++.+..+++.|.+++.....+..+.-|+-.+
T Consensus 167 ~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~~l~ 198 (199)
T PRK06265 167 LGLAHLPLMVIEGIITAFAVSFLARVRPELLK 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcc
Confidence 22444666777999999999999999887544
No 279
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=39.21 E-value=1.1e+02 Score=23.31 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHcccce
Q 012514 66 SFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFY 120 (462)
Q Consensus 66 ~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~~~~iifl~~~~~~ 120 (462)
.+-.++...+-+++++|. +.||+.++ ++..+.+-+++.++++++.+=-.+.|
T Consensus 8 ~ae~l~~~il~~~~iisf-i~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y 59 (76)
T PF06645_consen 8 LAEKLMQYILIISAIISF-IVGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFY 59 (76)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhh
Confidence 456677888888888764 56666664 46777776777777776655444444
No 280
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=38.74 E-value=2.7e+02 Score=28.65 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=49.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 332 SVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 332 s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++|.++...+.-|+-.....+-....+.+..|++.|-+.||.-..+-++|..+++++.-.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444555667888888888888899999999999999999999999999999887653
No 281
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=37.11 E-value=1.3e+02 Score=31.77 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=50.7
Q ss_pred HHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH-HHHHHHHHHHH
Q 012514 35 SIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVI-ITIVMAVSLLI 112 (462)
Q Consensus 35 ~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i-~~i~~~~~~ii 112 (462)
++..-.+...-...+.++|++.++ ..++++-+....|+-+++-.++++.+-++.||..+-.+ |.+.++.++..
T Consensus 293 gi~inLvE~~wK~~lk~~~~~~~~-----ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~~~F 366 (491)
T PF03219_consen 293 GISINLVEVVWKSQLKQLYPDPND-----YSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITGLLF 366 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHH
Confidence 444555566666777788875432 25788999999998888888888998899999766665 45444444433
No 282
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=31.74 E-value=4.3e+02 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccc
Q 012514 418 WLLAALVAANLFVYVVVARRYSYKNVQ 444 (462)
Q Consensus 418 ~~la~l~~~~~v~~~~~~~~~~~~~~~ 444 (462)
.-+.++.....+++.+..+.|||.+.+
T Consensus 179 ~gl~~~~fg~~V~~~~~~~~~kr~~~~ 205 (214)
T cd08764 179 IGIVLVIFGGLVVYLVTEPDYKRIELP 205 (214)
T ss_pred HHHHHHHHHHHHHHhccCcccCCCCCc
Confidence 344455566778888888888886543
No 283
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=30.36 E-value=6.4e+02 Score=26.17 Aligned_cols=183 Identities=9% Similarity=0.061 Sum_probs=0.0
Q ss_pred eCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 012514 251 IPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLS 330 (462)
Q Consensus 251 ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 330 (462)
+|++.++....+..++++|.+++++++.-|.. -....+..=.+-.++++.+.............++.
T Consensus 38 l~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~-------~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~------ 104 (432)
T PF06963_consen 38 LPVSIYGLVRSLSAILFGPWVGRWIDRSPRLK-------VIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSW------ 104 (432)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCCcchh-------hHHHHHHHHHHHHHHHHHHHHHHHhCCccccccch------
Q ss_pred cchhhHHHHHHHHHHHHHHHhhHHH----HHHhhhcCchhhhHHHHHHHHHHhH---HHHHHHHHHhhcccccccCCCcc
Q 012514 331 MSVFWLAPQSIISGVADGFALVGLQ----EYFYDQVPDSMRSLGIAFYLSVIGA---ANFLSSFLITVVDHVTDKSGRSW 403 (462)
Q Consensus 331 ~s~~wli~~~~l~~~gEl~~~p~~~----~~~~~~aP~~~~g~~~g~~~l~~~~---g~~lg~~l~~~~~~~~~~~~~~w 403 (462)
....|++...++-.++-+....... +.+-.++ ++-++....++..+..+ .+++|+++++.+. ++
T Consensus 105 ~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~-~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~--------t~ 175 (432)
T PF06963_consen 105 LFIALFALLILLGAIERLASIANTIAVERDWVVVIA-GGDPGALARMNATMRRIDLFCKLLAPLFVGLLM--------TF 175 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hc
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccc----cccccccccccCCCCCCCCCC
Q 012514 404 FGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSY----KNVQRSVAVADCYQGDRSRSH 461 (462)
Q Consensus 404 ~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 461 (462)
.. +......+.+.=.+-..+=|+++.+-|++ .+++++....|-+..++.+.+
T Consensus 176 ~s------~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~ 231 (432)
T PF06963_consen 176 AS------PVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSES 231 (432)
T ss_pred cC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccc
No 284
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=30.20 E-value=17 Score=35.69 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchhHHHHHHH
Q 012514 341 IISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKFYWLL 420 (462)
Q Consensus 341 ~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~f~~l 420 (462)
++.+++-.+.....+.++...-|+.+++.+.| +++++.+..++ ..+.+ +..++.+.+. ..||.+-
T Consensus 5 ~~~~~~~~~~q~s~~glas~~p~~y~~a~~~G-----q~~aGv~~s~l-~ii~~--------~~~~~~~~~a-~~yF~~a 69 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASLFPPKYTQAVMIG-----QGLAGVIVSLL-RIITK--------ASGSDVKTSA-FIYFIIA 69 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhcCCHHHHHHHHhh-----ccHHHHHHHHH-HHHHH--------Hhhhccchhh-hhHHHHH
Confidence 45677777888888888887766555555433 45555444322 32222 2222222221 2345545
Q ss_pred HHHHHHHHHHHHhhhhc
Q 012514 421 AALVAANLFVYVVVARR 437 (462)
Q Consensus 421 a~l~~~~~v~~~~~~~~ 437 (462)
.++.+++.+.|..+.|.
T Consensus 70 ~~i~i~~~~~~~~l~~~ 86 (309)
T PF01733_consen 70 VLIVILCIILYFILPRS 86 (309)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhccC
Confidence 55555666666655543
No 285
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=30.01 E-value=24 Score=27.47 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhhcccccccccccccccCCCCCC
Q 012514 425 AANLFVYVVVARRYSYKNVQRSVAVADCYQGDR 457 (462)
Q Consensus 425 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (462)
++.++.|+++.|.-+|+..|.+.-.++...+|+
T Consensus 11 v~~~i~yf~~~rpqkK~~k~~~~m~~~L~~Gd~ 43 (84)
T TIGR00739 11 LIFLIFYFLIIRPQRKRRKAHKKLIESLKKGDK 43 (84)
T ss_pred HHHHHHHHheechHHHHHHHHHHHHHhCCCCCE
Confidence 344455666666666666565566666777775
No 286
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=29.72 E-value=2.1e+02 Score=20.44 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHH
Q 012514 69 NWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMA 107 (462)
Q Consensus 69 ~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~ 107 (462)
.-+.|+.-+|-.++.+++..-+..+.+..+-.++.+.-+
T Consensus 5 vt~fWs~il~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i 43 (57)
T PF11151_consen 5 VTFFWSFILGEVVGYIGSSLTGVTYNFTTAAIIAVIFGI 43 (57)
T ss_pred ehhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 346799999999988888777777776666555444333
No 287
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=29.22 E-value=1.4e+02 Score=31.67 Aligned_cols=106 Identities=11% Similarity=0.132 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHH-HHHhhcccccccC---C-CccccC----
Q 012514 336 LAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSS-FLITVVDHVTDKS---G-RSWFGK---- 406 (462)
Q Consensus 336 li~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~-~l~~~~~~~~~~~---~-~~w~~~---- 406 (462)
++.+|++.++.--..++..++|-++.|.+..-|.||.+.+-.+.+|+---. ++..+++..|... + .+.+..
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~C~~~~t~~~~c~~~~ 487 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVATCTVPGTNSFSCSSDA 487 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccccCCCCCCCceeccHH
Confidence 446889999999999999999999999999999999998877777654433 4445666555321 1 011110
Q ss_pred -------CCc-cc--hhHHHHHHHHHHHHHHHHHHH-hhhhccccc
Q 012514 407 -------DMN-SS--RLDKFYWLLAALVAANLFVYV-VVARRYSYK 441 (462)
Q Consensus 407 -------~~n-~~--~l~~~f~~la~l~~~~~v~~~-~~~~~~~~~ 441 (462)
+.+ +. ..|-||..-.++.++..++++ ++.|+.++.
T Consensus 488 ~k~~Ct~~~GG~C~i~rDGYYi~~~lCvviGi~~~~~~i~~~~~~L 533 (544)
T PF13000_consen 488 EKEQCTKAGGGTCVIIRDGYYITNILCVVIGIVLWFLFIRPKARRL 533 (544)
T ss_pred HHHHHhhCCCCeEEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 00 034577766666555555544 666666665
No 288
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=27.56 E-value=2.4e+02 Score=25.70 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCc-hhhhHHHHHHHH-HHhHHHHHHHHHHh
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPD-SMRSLGIAFYLS-VIGAANFLSSFLIT 390 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~-~~~g~~~g~~~l-~~~~g~~lg~~l~~ 390 (462)
.++++...++.++++....|.....+.+..|+ +.++...+.... ...+|..+++.+..
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAG 153 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555668999999999999999999998 678888887777 56677777765444
No 289
>PF14007 YtpI: YtpI-like protein
Probab=27.16 E-value=1.4e+02 Score=23.64 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHcccceeecCC
Q 012514 73 SGLCSGLLLGVTVVVYVQEHVSWGAADVIITIVMAVSLLIFIIGRPFYRYRVP 125 (462)
Q Consensus 73 ~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~~~~iifl~~~~~~~~~~p 125 (462)
+.+-+|.++.....--.-. ..=...+.++++.+++++...+.|.|.|+|-.|
T Consensus 35 a~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 35 ANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 4455677664443322212 233588889999999999999988888776544
No 290
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=26.64 E-value=7.9e+02 Score=26.06 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 012514 64 KMSFFNWWNSGLCSGLLLGVTVVVYVQEH 92 (462)
Q Consensus 64 ~~~~f~~fY~~iNiG~~i~~~~~~~l~~~ 92 (462)
-+|+|..|+...|++.+++..+..++.++
T Consensus 182 akRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 182 AKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36899999999999999999999998763
No 291
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=26.54 E-value=7.9e+02 Score=26.00 Aligned_cols=54 Identities=7% Similarity=-0.049 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhH----HHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhccc
Q 012514 341 IISGVADGFALVG----LQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDH 394 (462)
Q Consensus 341 ~l~~~gEl~~~p~----~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~ 394 (462)
++.-.+|+.-+.. -..++.+..+.+.-.+.-++..+...+|..+||.+...+.+
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778886654 35889999999999999999999999999999998887664
No 292
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.26 E-value=76 Score=26.68 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc
Q 012514 417 YWLLAALVAANLFVYVVVARRYSY 440 (462)
Q Consensus 417 f~~la~l~~~~~v~~~~~~~~~~~ 440 (462)
|.+++++..+.+++++++.|+.||
T Consensus 71 ~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444445555444444
No 293
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.41 E-value=44 Score=27.50 Aligned_cols=30 Identities=17% Similarity=-0.035 Sum_probs=18.8
Q ss_pred HHHHHhhhhcccccccccccccccCCCCCC
Q 012514 428 LFVYVVVARRYSYKNVQRSVAVADCYQGDR 457 (462)
Q Consensus 428 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (462)
++.|+++.|+=+|+..|...-..+...+||
T Consensus 15 ~i~yF~~iRPQkKr~K~~~~m~~~Lk~GD~ 44 (109)
T PRK05886 15 GGFMYFASRRQRKAMQATIDLHESLQPGDR 44 (109)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHhcCCCCE
Confidence 445666666666665555556667777776
No 294
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=24.21 E-value=34 Score=18.63 Aligned_cols=6 Identities=67% Similarity=1.586 Sum_probs=4.6
Q ss_pred cCcCCC
Q 012514 6 PSLRAC 11 (462)
Q Consensus 6 ~~~~~c 11 (462)
|+||||
T Consensus 4 pdlrpc 9 (22)
T PF08121_consen 4 PDLRPC 9 (22)
T ss_pred CccccC
Confidence 678886
No 295
>PRK03612 spermidine synthase; Provisional
Probab=22.88 E-value=2.7e+02 Score=29.71 Aligned_cols=77 Identities=16% Similarity=0.067 Sum_probs=43.1
Q ss_pred HHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh-ccchh-hHHHHHHHHHHHHH
Q 012514 33 LISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQE-HVSWG-AADVIITIVMAVSL 110 (462)
Q Consensus 33 li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~-~~g~~-~~F~i~~i~~~~~~ 110 (462)
+.++-.|+.-|-+..+..+..++ + ..+..+..|....+|+++|.++.+++-- ..|-. ..+.++.+.+++++
T Consensus 119 ~~~~l~G~~~Pl~~~~~~~~~~~-~------~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 119 LIGLLIGMEIPLLMRILQRIRDQ-H------LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-c------hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34455555555555444332210 0 1345677888888999998888887643 45543 44455555555554
Q ss_pred HHHHHc
Q 012514 111 LIFIIG 116 (462)
Q Consensus 111 iifl~~ 116 (462)
+.....
T Consensus 192 ~~~~~~ 197 (521)
T PRK03612 192 VFLWLF 197 (521)
T ss_pred HHHHHH
Confidence 444333
No 296
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.48 E-value=1.5e+02 Score=23.63 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHHHHH-HHHHHHHHHhhhhccc-ccccccccccccCC
Q 012514 417 YWLLAAL-VAANLFVYVVVARRYS-YKNVQRSVAVADCY 453 (462)
Q Consensus 417 f~~la~l-~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~ 453 (462)
|++++++ +++.++.--+.++..+ ..++|++..++|-+
T Consensus 6 ~llL~l~LA~lLlisSevaa~~~~~~~~~~~~~~v~~~~ 44 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAARELEETEKEEEENEVQDDK 44 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhccccccCCCCCccc
Confidence 4555543 3333334444555552 33445555555544
No 297
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.02 E-value=6.1e+02 Score=23.11 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=20.3
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514 404 FGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSY 440 (462)
Q Consensus 404 ~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~ 440 (462)
+|..+|. .+. .|...+++++..++.+.+-|||+=
T Consensus 170 lp~~inp-~l~--~~~~iiig~i~~~~~~~lkkk~~i 203 (206)
T PF06570_consen 170 LPPVINP-VLP--PWVYIIIGVIAFALRFYLKKKYNI 203 (206)
T ss_pred ccccCCc-CCC--HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4445664 233 244556667777777877777753
No 298
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=22.02 E-value=48 Score=26.63 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhcccccccccccccccCCCCCC
Q 012514 422 ALVAANLFVYVVVARRYSYKNVQRSVAVADCYQGDR 457 (462)
Q Consensus 422 ~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (462)
.+.++.++.|+++.|.=+++..|......+..++|+
T Consensus 14 ~~vl~~~ifyFli~RPQrKr~K~~~~ml~sL~kGD~ 49 (97)
T COG1862 14 PLVLIFAIFYFLIIRPQRKRMKEHQELLNSLKKGDE 49 (97)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhccCCCE
Confidence 334445566776777777777777777777888876
No 299
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=20.89 E-value=1.5e+02 Score=31.86 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVIIT 103 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~ 103 (462)
+|....-=++.++-.|.+-.++.+.+.+..+++-. +..+..+.-.|.+. |--+|.+++|.+.+.+|=+..|.+.+
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~---at~Q~l~~g~f~Gl--G~g~GslIGG~~v~~fg~~ttf~~~g 533 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLR---ATAQGLLQGIFHGL--GKGLGSLIGGFVVERFGARTTFRIFG 533 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcch---HHHHHHHHHHhccc--CcchhhhhhhhhheeehhHHHHHHHH
Confidence 34444444678999999999999999999887643 23355555555543 33345566666767777677777777
Q ss_pred HHHHHHHHHHHHcccce
Q 012514 104 IVMAVSLLIFIIGRPFY 120 (462)
Q Consensus 104 i~~~~~~iifl~~~~~~ 120 (462)
+..++.++.+....+.+
T Consensus 534 iAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 534 IACLVTLALFISIQLLL 550 (618)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 76666666665544443
No 300
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.45 E-value=1.7e+02 Score=29.22 Aligned_cols=38 Identities=34% Similarity=0.510 Sum_probs=26.2
Q ss_pred HhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHh
Q 012514 350 ALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLIT 390 (462)
Q Consensus 350 ~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~ 390 (462)
+..+.---.+-+=|..|| .|+||++.+.|++++.+++.
T Consensus 198 vl~tlaivLFPLWP~~mR---~gvyY~sig~~gfl~~IlvL 235 (372)
T KOG2927|consen 198 VLVTLAIVLFPLWPRRMR---QGVYYLSIGAGGFLAFILVL 235 (372)
T ss_pred HHHHHHHHhcccCcHHHh---cceeeeecchhHHHHHHHHH
Confidence 334444444566777777 78899999888888866654
Done!