Query 012514
Match_columns 462
No_of_seqs 178 out of 1296
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 10:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 3.1E-22 1E-26 209.4 15.3 384 23-446 108-514 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 5.6E-19 1.9E-23 182.9 25.7 355 23-444 107-481 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.4 2.2E-11 7.5E-16 123.8 20.3 313 23-437 118-436 (451)
4 3o7q_A L-fucose-proton symport 99.0 3.9E-08 1.3E-12 99.3 24.1 87 22-114 115-227 (438)
5 2gfp_A EMRD, multidrug resista 98.8 3.1E-09 1.1E-13 105.4 7.2 83 23-111 87-169 (375)
6 4gc0_A D-xylose-proton symport 98.8 4.3E-07 1.5E-11 93.2 20.3 80 22-107 124-211 (491)
7 2cfq_A Lactose permease; trans 98.4 1.3E-06 4.3E-11 88.3 11.8 138 255-436 263-401 (417)
8 3o7q_A L-fucose-proton symport 98.2 4.1E-05 1.4E-09 76.9 17.9 113 254-392 64-176 (438)
9 1pw4_A Glycerol-3-phosphate tr 98.1 5.5E-05 1.9E-09 76.2 17.0 113 254-391 65-177 (451)
10 4aps_A DI-OR tripeptide H+ sym 98.1 0.00011 3.7E-09 75.2 18.0 143 254-440 57-202 (491)
11 2gfp_A EMRD, multidrug resista 97.9 5.3E-05 1.8E-09 74.6 10.2 109 255-392 39-147 (375)
12 2xut_A Proton/peptide symporte 97.7 0.00037 1.3E-08 71.9 14.7 142 255-438 58-202 (524)
13 4gc0_A D-xylose-proton symport 96.7 0.024 8.2E-07 57.4 15.0 122 259-391 63-184 (491)
14 2cfq_A Lactose permease; trans 94.4 0.018 6.1E-07 57.5 3.0 86 24-115 312-398 (417)
15 3ukx_C Bimax2 peptide; arm rep 23.5 42 0.0014 18.6 1.6 24 436-459 3-26 (28)
16 2ks1_B Epidermal growth factor 23.4 72 0.0025 20.6 3.0 15 425-439 26-40 (44)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=3.1e-22 Score=209.45 Aligned_cols=384 Identities=19% Similarity=0.285 Sum_probs=232.4
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++.++.++|.|+..|+..+++.|.+++++.. ...+.|++++.+.|+|.++++.+++++.+..||++.|.+.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS---LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT---HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4678889999999999999999999999999875421 1256789999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccc----------
Q 012514 103 TIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTK---------- 172 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~---------- 172 (462)
++..+++.+.++..++...+++|++++.....+.+..+.+++....+ ....+............+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCC 263 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhh
Confidence 88888877776665554443334333322222222222222110000 0000000000000000000000
Q ss_pred ----------cchh--hhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHH
Q 012514 173 ----------NLEF--LDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAAT 240 (462)
Q Consensus 173 ----------~~~~--ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~ 240 (462)
...| +|++. +.+...+.+++|+.+..++++....+++..+.|..+.+..+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (524)
T 2xut_A 264 AMVLVMGFVGAGASLQLERAR---------------KSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND 328 (524)
T ss_dssp HHHHHHHHHHTGGGTHHHHSC---------------CSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred hhhhhhcccccchhhHHhhhh---------------ccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence 0001 11100 01112234556666777788888888899899988888777666
Q ss_pred hccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 012514 241 MNREIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVV 320 (462)
Q Consensus 241 ~~~~~g~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~ 320 (462)
++.. .+ ++.+.+..++++..++..|+.+++..|..+|++.+ .++.+++.+|+++.+++++.++..+..+.
T Consensus 329 ~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--- 398 (524)
T 2xut_A 329 MVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD--- 398 (524)
T ss_dssp SCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT---
T ss_pred cCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 6532 22 36677888888999999999998877776664322 35667888999999988887665432100
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCC
Q 012514 321 EENPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSG 400 (462)
Q Consensus 321 ~~~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~ 400 (462)
.....+.+|+++.+++.++|+.+..|...+++.+.+|+++||.++|++....++|+.+|+.+.+.+...+.
T Consensus 399 ------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~--- 469 (524)
T 2xut_A 399 ------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV--- 469 (524)
T ss_dssp ------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH---
T ss_pred ------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 01235778888999999999999999999999999999999999999999999999999998875542210
Q ss_pred CccccC-CCccchhHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012514 401 RSWFGK-DMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQRS 446 (462)
Q Consensus 401 ~~w~~~-~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~~~ 446 (462)
.+|.++ +.+.. .+.|++.+++++++.++++++.++++++++|+.
T Consensus 470 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (524)
T 2xut_A 470 TEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQMQDHYRQ 514 (524)
T ss_dssp HHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC--------------
T ss_pred cccccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 023321 12211 223778888888888888888888876654433
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.83 E-value=5.6e-19 Score=182.94 Aligned_cols=355 Identities=15% Similarity=0.169 Sum_probs=230.2
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++.++.++|.|...|+..++++|.+++++. .+..++++++.+.|+|..++|.+++++.++.||++.|.+.
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 467788999999999999999999999999987652 2357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccceeec---CCCCC-CchhHHHHH---------------HHHHHhCCCCCCCCCCcccccccccc
Q 012514 103 TIVMAVSLLIFIIGRPFYRYR---VPKGS-PLTPMLQVL---------------VAAIAKRNLPHPSDPDQLFEYPKVVA 163 (462)
Q Consensus 103 ~i~~~~~~iifl~~~~~~~~~---~p~~~-~~~~~~~vl---------------~~a~~~~~~~~~~~~~~l~~~~~~~~ 163 (462)
++..+++++.++..++++.++ +|+.. ...+..+.. .....+ .... + +.. .
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~--~-~~~-~------ 251 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG-WNSL--P-AYI-N------ 251 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS-SCCT--T-HHH-H------
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc-Cccc--c-cch-h------
Confidence 888888877665544433221 11111 111111100 001111 0000 0 000 0
Q ss_pred ccccccccccchhhhHhhhhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHH-hc
Q 012514 164 KGRLLCHTKNLEFLDKAAILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAAT-MN 242 (462)
Q Consensus 164 ~~~~l~~~~~~~~ld~a~i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~-~~ 242 (462)
............... . .|+. .....+++++..+..++++...+++..+.+..+.+..+..+ .+
T Consensus 252 ------~~~~~~~~~~~~~~~-~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (491)
T 4aps_A 252 ------LLTIVAIAIPVFYFA-W--------MISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVD 315 (491)
T ss_dssp ------HHHHHHHHHHHHHHH-H--------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCC
T ss_pred ------hhhHHHHHHHHHHHH-H--------Hhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 000000000000000 0 0000 01122456666677888888899999999888877766543 22
Q ss_pred cCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012514 243 REIGNGFLIPPASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEE 322 (462)
Q Consensus 243 ~~~g~g~~ip~~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~ 322 (462)
.+ . .+.+.+..++++..++..++.+++..++.+| ......++.+|+++.+++++.++...... .
T Consensus 316 ~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 379 (491)
T 4aps_A 316 SS----W-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN------QPSSPTKFAVGLMFAGLSFLLMAIPGALY----G- 379 (491)
T ss_dssp CS----S-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC----C-
T ss_pred cC----c-cCHHHHhccchHHHHHHHHHHHHHHHHHhcc------CCCchHHHHHHHHHHHHHHHHHHHHHHhc----C-
Confidence 22 1 4567888999999999999998876555433 12467788899999999998887765321 0
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCc
Q 012514 323 NPTKGSLSMSVFWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRS 402 (462)
Q Consensus 323 ~g~~~~~~~s~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~ 402 (462)
...+.+.+|+++.+++.++|+.+..|...+++.+..|++.||.++|++.....+|..+++.+...+...
T Consensus 380 ----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------- 448 (491)
T 4aps_A 380 ----TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------- 448 (491)
T ss_dssp ----CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-------
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 112457788889999999999999999999999999999999999999999999999998886644311
Q ss_pred cccCCCccchhHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 012514 403 WFGKDMNSSRLDKFYWLLAALVAANLFVYVVVARRYSYKNVQ 444 (462)
Q Consensus 403 w~~~~~n~~~l~~~f~~la~l~~~~~v~~~~~~~~~~~~~~~ 444 (462)
.....|+.+++++++..++.+...++.+++.+|
T Consensus 449 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (491)
T 4aps_A 449 ---------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQG 481 (491)
T ss_dssp ---------STTHHHHHTHHHHHHHHHHHHHC----------
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 123457778888888888888887777665443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.37 E-value=2.2e-11 Score=123.80 Aligned_cols=313 Identities=9% Similarity=-0.013 Sum_probs=175.1
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-hhhHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVS-WGAADVI 101 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i 101 (462)
+.+.++++.++.++|.|...|...+++.|.+++++ +.++++++..+.++|.++++.+++++.+..| |++.|.+
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 46678889999999999999999999999997542 2578999999999999999999999888888 9999999
Q ss_pred HHHHHHHHHHHHHHcccceeecCCCCCCchhHHHHHHHHHHhCCCCCCCCCCccccccccccccccccccccchhhhHhh
Q 012514 102 ITIVMAVSLLIFIIGRPFYRYRVPKGSPLTPMLQVLVAAIAKRNLPHPSDPDQLFEYPKVVAKGRLLCHTKNLEFLDKAA 181 (462)
Q Consensus 102 ~~i~~~~~~iifl~~~~~~~~~~p~~~~~~~~~~vl~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ld~a~ 181 (462)
.++..++..++.+...+. +|+.... .+..+.... .+.+ .. +..
T Consensus 192 ~~~~~~~~~~~~~~~~~~----~~~~~~~---------------~~~~~~~~~-~~~~----------~~------~~~- 234 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMRD----TPQSCGL---------------PPIEEYKND-YPDD----------YN------EKA- 234 (451)
T ss_dssp HHHHHHHHHHHHHHHCCC----SSTTTCC---------------CSCTTTCCC---------------------------
T ss_pred HHHHHHHHHHHHHhhccC----CHhhcCC---------------CChhhhccc-cccc----------ch------hhh-
Confidence 877766655544332221 1111000 000000000 0000 00 000
Q ss_pred hhcCCCCCCCCCCCcccccccchHHHHHHHhHHHHHHhhhhhHhhhcchhHHHHHHHHHhccCCCCCeeeCc---cccch
Q 012514 182 ILEDYETPVDQQSPWRIANVTKVEEMKLVLNVIPVWLASLPFGISVAQSTTFFIKQAATMNREIGNGFLIPP---ASVFG 258 (462)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~~~~~g~g~~ip~---~~~~~ 258 (462)
.. ...++ +....+..+-..+..+.+...+.+..+....+.+ ...+....+ .++ +.+.+
T Consensus 235 ----~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g----~~~~~~~~~~~ 295 (451)
T 1pw4_A 235 ----EQ-----ELTAK---QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS---PTYLKEVKH----FALDKSSWAYF 295 (451)
T ss_dssp -------------CCT---HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH---HHHBTTBSC----CCHHHHHHHHH
T ss_pred ----hc-----ccccc---cchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcC----CCHHHHHHHHH
Confidence 00 00000 0000000000011222222233333222222111 122322223 333 24455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHH-HHHHHHHHHHHHhhhhcccCCCCCCcccchhhHH
Q 012514 259 LTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSI-ATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLA 337 (462)
Q Consensus 259 ~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli 337 (462)
+..+..++..++..++. +|..+ +..+.+.++.++.+ ++++...+. ...+.++.+
T Consensus 296 ~~~~~~~~~~~~~g~l~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 350 (451)
T 1pw4_A 296 LYEYAGIPGTLLCGWMS----DKVFR-----GNRGATGVFFMTLVTIATIVYWMN----------------PAGNPTVDM 350 (451)
T ss_dssp HHHHHHHHHHHHHHHHH----HHTST-----TCHHHHHHHHHHHHHHHHHHTTSC----------------CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHhc-----CCchhHHHHHHHHHHHHHHHHHHh----------------cccCHHHHH
Confidence 55555666666665544 33200 11223334444433 444333211 012455566
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhH-HHHHHHHHHhhcccccccCCCccccCCCccchhHHH
Q 012514 338 PQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGA-ANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRLDKF 416 (462)
Q Consensus 338 ~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~-g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l~~~ 416 (462)
...++.+++.....+....++.+..|++.||.++|++.....+ |..+++.+.+.+.. ..+ ....
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~------------~~g---~~~~ 415 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD------------FFG---WDGG 415 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------SSC---SHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcC---cHHH
Confidence 6677888888888888899999999999999999999999998 99999888764431 111 2345
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 012514 417 YWLLAALVAANLFVYVVVARR 437 (462)
Q Consensus 417 f~~la~l~~~~~v~~~~~~~~ 437 (462)
|+..++++++..++++...++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 416 FMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 677777777777666665443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.04 E-value=3.9e-08 Score=99.32 Aligned_cols=87 Identities=14% Similarity=0.194 Sum_probs=71.1
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-hccc------
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQ-EHVS------ 94 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~-~~~g------ 94 (462)
.+.+.++++.++.++|.|...|...+++.|.+++++ +.++++++..+.++|.++++.+++++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 347889999999999999999999999999998654 256799999999999999999999987 5544
Q ss_pred -------------------hhhHHHHHHHHHHHHHHHHH
Q 012514 95 -------------------WGAADVIITIVMAVSLLIFI 114 (462)
Q Consensus 95 -------------------~~~~F~i~~i~~~~~~iifl 114 (462)
|++.|.+.++..++..++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999776655555544443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.84 E-value=3.1e-09 Score=105.45 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 23 HEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 23 ~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
+.+.++++..+.++|.|...|...+++.|.+++++ +.++++++..+.++|..+++.+++++.++.+|+..|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 46778888899999999999999999999986543 357899999999999999999999999888999999987
Q ss_pred HHHHHHHHH
Q 012514 103 TIVMAVSLL 111 (462)
Q Consensus 103 ~i~~~~~~i 111 (462)
++..++..+
T Consensus 161 ~~~~~~~~~ 169 (375)
T 2gfp_A 161 LVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 766665544
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.76 E-value=4.3e-07 Score=93.19 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc--------c
Q 012514 22 VHEVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNWWNSGLCSGLLLGVTVVVYVQEH--------V 93 (462)
Q Consensus 22 ~~~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~fY~~iNiG~~i~~~~~~~l~~~--------~ 93 (462)
.+.+.++++.++.++|.|+.-+....+++|..+++. +.+..+++..++.+|.+++..++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 357889999999999999999999999999976532 25678888999999999988887766442 3
Q ss_pred chhhHHHHHHHHHH
Q 012514 94 SWGAADVIITIVMA 107 (462)
Q Consensus 94 g~~~~F~i~~i~~~ 107 (462)
.|++.+.+..+..+
T Consensus 198 ~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 198 GWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHTTHHHHH
T ss_pred hhHHHhhhhhhhhh
Confidence 45555555444333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.41 E-value=1.3e-06 Score=88.30 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=84.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
.+.+++.+..++..++..++.++..+| +.+.+|.++.+++++..++ ..+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~------------------~~~~~ 313 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSF------------------ATSAL 313 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTT------------------CCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHH------------------hccHH
Confidence 345555555555666666654433222 2344666666665544321 11334
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH-HHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccchh
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF-YLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSSRL 413 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~-~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~~l 413 (462)
+++...++.+++.....+....++.+..|++.||..+|+ +....++|+.+++.+.+.+. +..+ .
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~------------~~~g---~ 378 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY------------ESIG---F 378 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH------------HHSH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH------------HhcC---c
Confidence 444455566777666677778899999999999999988 46777788888877766322 1111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 012514 414 DKFYWLLAALVAANLFVYVVVAR 436 (462)
Q Consensus 414 ~~~f~~la~l~~~~~v~~~~~~~ 436 (462)
...|...++++++..++.+...+
T Consensus 379 ~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 379 QGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 33466777777777666655444
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.22 E-value=4.1e-05 Score=76.89 Aligned_cols=113 Identities=8% Similarity=0.003 Sum_probs=88.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++.+...+..++..|+..++.++..+| +-+.+|.++.+++.+....... ..+.
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~---------------~~~~ 117 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE---------------IMNY 117 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH---------------TTCH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc---------------cccH
Confidence 3466666777777888888766544433 3467888888888877643221 1356
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
++++...++.|+|.....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus 118 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 118 TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777889999999999999999999999999999999999999999999998887654
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.14 E-value=5.5e-05 Score=76.15 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=87.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccch
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSV 333 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 333 (462)
+++.++..+...+..|+..++.++..+| +-+.+|.++.+++.+..++.... ..+.
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~ 119 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA--------------TSSI 119 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH--------------HSSS
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc--------------cccH
Confidence 4566667777777788887766544333 34667888888888777652110 0245
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 334 FWLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 334 ~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
++++...++.++|+....|....++.+..|++.|+.++|++....++|..+++.+.+.
T Consensus 120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788999999999999999999999999999999999999999999999887764
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.08 E-value=0.00011 Score=75.18 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=101.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHH-HHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 012514 254 ASVFGLTAVGMIISVTFYEKILVP-VLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMS 332 (462)
Q Consensus 254 ~~~~~~n~l~iill~pi~~~~~~p-~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s 332 (462)
+++.+...+...+..|+..++-++ ..+| +-+.+|.++.+++.+..++ ..+
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~------------------~~~ 107 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLAL------------------PFG 107 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHS------------------CCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHH------------------hhh
Confidence 356667777777888888876654 3333 2456777777777766543 124
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh--hhHHHHHHHHHHhHHHHHHHHHHhhcccccccCCCccccCCCcc
Q 012514 333 VFWLAPQSIISGVADGFALVGLQEYFYDQVPDSM--RSLGIAFYLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNS 410 (462)
Q Consensus 333 ~~wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~--~g~~~g~~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~ 410 (462)
.++++...++.++|+....|....++.+..|++. |+..++++.....+|..+++.+.+.+... .+
T Consensus 108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------------~g- 174 (491)
T 4aps_A 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA------------AG- 174 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------SC-
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh------------hh-
Confidence 5666778899999999999999999999999988 77888889999999999998887654311 11
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 012514 411 SRLDKFYWLLAALVAANLFVYVVVARRYSY 440 (462)
Q Consensus 411 ~~l~~~f~~la~l~~~~~v~~~~~~~~~~~ 440 (462)
...-|+..+++.++..++++...+++.+
T Consensus 175 --~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 175 --YHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 1334555666666666666666555443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.85 E-value=5.3e-05 Score=74.62 Aligned_cols=109 Identities=19% Similarity=0.139 Sum_probs=84.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
+..++..+...+..|+..++.+ |++ ..+-+.+|.++.+++.+..++.. +.+
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~d----r~g-------~r~~~~~~~~~~~~~~~~~~~~~------------------~~~ 89 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISD----RVG-------RRPVILVGMSIFMLATLVAVTTS------------------SLT 89 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHT----TSC-------CCCCCHHHHHHHHHHHHHHHHHH------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhC-------CchhHHHHHHHHHHHHHHHHHhc------------------cHH
Confidence 4556666677777777776543 432 22335578888888877766542 345
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhhc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITVV 392 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~~ 392 (462)
+++...++.+++.....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6667789999999999999999999999999999999999999999999998887643
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.73 E-value=0.00037 Score=71.89 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=93.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchh
Q 012514 255 SVFGLTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVF 334 (462)
Q Consensus 255 ~~~~~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 334 (462)
++.+...+..++..|+..++.+ |+. ...+-+.+|.++.+++.+..++. +.+.+
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~d----r~~------g~r~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 110 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIAD----RFF------GKYNTILWLSLIYCVGHAFLAIF-----------------EHSVQ 110 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHT----TSS------CSHHHHHHHHHHHHHHHHHHHHT-----------------SSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHh------cchHHHHHHHHHHHHHHHHHHHh-----------------cccHH
Confidence 4555556666666677666543 320 12334567777777777665542 12456
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH---HHHHHhHHHHHHHHHHhhcccccccCCCccccCCCccc
Q 012514 335 WLAPQSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAF---YLSVIGAANFLSSFLITVVDHVTDKSGRSWFGKDMNSS 411 (462)
Q Consensus 335 wli~~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~---~~l~~~~g~~lg~~l~~~~~~~~~~~~~~w~~~~~n~~ 411 (462)
+++...++.++|+....|...+++.+..|++.|+..+++ +.....+|..+++.+.+.+. +..+
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~------------~~~g-- 176 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL------------KNFG-- 176 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH------------HTSC--
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cccc--
Confidence 677788999999999999999999999999999877666 88888888888887765332 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012514 412 RLDKFYWLLAALVAANLFVYVVVARRY 438 (462)
Q Consensus 412 ~l~~~f~~la~l~~~~~v~~~~~~~~~ 438 (462)
....|++.+++.++..++++...+++
T Consensus 177 -~~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 177 -AAVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 13345666666666555554444433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.72 E-value=0.024 Score=57.41 Aligned_cols=122 Identities=19% Similarity=0.101 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccchhhHHH
Q 012514 259 LTAVGMIISVTFYEKILVPVLRRATGNERGIQILQRIGIGMLFSIATMVFAALVEKKRLGVVEENPTKGSLSMSVFWLAP 338 (462)
Q Consensus 259 ~n~l~iill~pi~~~~~~p~~~r~~~~~~~~s~~~ki~iG~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~wli~ 338 (462)
.-.+..++..++..++-+++.||. -+.++.++..++.+..++....................+.+.++.
T Consensus 63 ~~~~G~~iG~~~~G~laDr~GRk~-----------~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 63 SALIGCIIGGALGGYCSNRFGRRD-----------SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 334444555556565554444442 355677777766665554221000000000000001235566777
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 012514 339 QSIISGVADGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSFLITV 391 (462)
Q Consensus 339 ~~~l~~~gEl~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~lg~~l~~~ 391 (462)
.-++.|+|+....+....++.+.+|++.|+..++++.....+|..++..+...
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence 88999999999999999999999999999999999999999999888766543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=94.41 E-value=0.018 Score=57.49 Aligned_cols=86 Identities=9% Similarity=0.003 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHhccCCccchhhhhhcCCCCCCHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 012514 24 EVVFFLAIYLISIGTGGHKPSLESFGADQFDDDHAEERKKKMSFFNW-WNSGLCSGLLLGVTVVVYVQEHVSWGAADVII 102 (462)
Q Consensus 24 ~~~~~~~L~li~iG~G~~kp~i~a~~~dq~~~~~~~~~~~~~~~f~~-fY~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 102 (462)
.+.+.+...+.+++.+.+.+...++..|.++++ .+..++.+ +..+.++|..++|.++|++.++.|+...|.+.
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 344555555566666666666778888887632 12566777 46677799999999999998888999999988
Q ss_pred HHHHHHHHHHHHH
Q 012514 103 TIVMAVSLLIFII 115 (462)
Q Consensus 103 ~i~~~~~~iifl~ 115 (462)
++..+++.++.+.
T Consensus 386 ~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 386 GLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 8877777765544
No 15
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=23.52 E-value=42 Score=18.58 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=10.9
Q ss_pred hcccccccccccccccCCCCCCCC
Q 012514 436 RRYSYKNVQRSVAVADCYQGDRSR 459 (462)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~ 459 (462)
++.+++++.++-++.|-|...|.|
T Consensus 3 rrrrrrkrkrewdddddppkkrrr 26 (28)
T 3ukx_C 3 RRRRRRKRKREWDDDDDPPKKRRR 26 (28)
T ss_dssp ---CCCCCCCCCCCSSSCCSCCCC
T ss_pred hhHHHHHhhcccccCCCchhhhhc
Confidence 344445555555555555555544
No 16
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.38 E-value=72 Score=20.65 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhhccc
Q 012514 425 AANLFVYVVVARRYS 439 (462)
Q Consensus 425 ~~~~v~~~~~~~~~~ 439 (462)
++.+.+++++.|+.+
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 333444444444333
Done!