Query 012515
Match_columns 462
No_of_seqs 365 out of 3102
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:56:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3goz_A Leucine-rich repeat-con 99.9 5.6E-26 1.9E-30 221.8 19.3 266 176-459 24-301 (362)
2 2ca6_A RAN GTPase-activating p 99.9 4.5E-25 1.6E-29 217.3 24.0 265 176-459 34-320 (386)
3 2ca6_A RAN GTPase-activating p 99.9 4.3E-25 1.5E-29 217.4 22.8 258 180-457 15-289 (386)
4 1z7x_W Ribonuclease inhibitor; 99.9 2.7E-24 9.4E-29 216.6 28.1 264 176-458 144-414 (461)
5 1z7x_W Ribonuclease inhibitor; 99.9 1.7E-24 6E-29 218.1 24.5 265 176-459 87-358 (461)
6 3goz_A Leucine-rich repeat-con 99.9 7.6E-25 2.6E-29 213.7 19.3 258 180-455 4-266 (362)
7 3un9_A NLR family member X1; l 99.9 2.7E-22 9.3E-27 195.5 14.1 187 197-402 72-260 (372)
8 2ast_B S-phase kinase-associat 99.9 7.9E-21 2.7E-25 183.1 20.2 216 192-460 88-311 (336)
9 3rgz_A Protein brassinosteroid 99.9 7.9E-23 2.7E-27 218.7 3.4 244 177-462 421-724 (768)
10 3un9_A NLR family member X1; l 99.9 4.8E-21 1.6E-25 186.7 15.0 213 224-457 71-285 (372)
11 1ogq_A PGIP-2, polygalacturona 99.8 4E-23 1.4E-27 197.3 -2.7 232 175-461 51-287 (313)
12 3rgz_A Protein brassinosteroid 99.8 1.3E-21 4.4E-26 209.3 3.1 232 176-460 396-698 (768)
13 3v47_A TOLL-like receptor 5B a 99.8 2.3E-20 7.7E-25 187.6 10.9 251 175-459 80-412 (455)
14 3v47_A TOLL-like receptor 5B a 99.8 2.1E-20 7.1E-25 187.9 10.1 115 176-307 56-172 (455)
15 2z80_A TOLL-like receptor 2, v 99.8 4.5E-20 1.5E-24 179.2 9.9 235 175-455 53-290 (353)
16 4fcg_A Uncharacterized protein 99.8 5.3E-21 1.8E-25 183.7 1.6 223 175-454 82-313 (328)
17 1ozn_A Reticulon 4 receptor; N 99.8 3.2E-20 1.1E-24 174.7 6.8 206 197-456 32-239 (285)
18 2z66_A Variable lymphocyte rec 99.8 1.7E-20 5.7E-25 178.5 3.6 231 174-457 28-263 (306)
19 1xku_A Decorin; proteoglycan, 99.8 4.3E-20 1.5E-24 177.6 6.4 64 351-427 214-277 (330)
20 2id5_A Lingo-1, leucine rich r 99.8 5.7E-20 1.9E-24 185.9 7.6 88 353-457 224-311 (477)
21 4fmz_A Internalin; leucine ric 99.8 1.4E-18 4.7E-23 168.2 16.0 217 176-459 112-328 (347)
22 4fcg_A Uncharacterized protein 99.8 6E-21 2.1E-25 183.3 -0.9 212 196-460 80-295 (328)
23 1wwl_A Monocyte differentiatio 99.8 3.5E-20 1.2E-24 176.8 4.1 220 195-458 93-312 (312)
24 3o6n_A APL1; leucine-rich repe 99.8 4.5E-20 1.5E-24 181.8 4.3 233 175-457 70-333 (390)
25 3zyj_A Leucine-rich repeat-con 99.8 3.6E-20 1.2E-24 185.4 3.6 227 174-455 64-292 (440)
26 2ast_B S-phase kinase-associat 99.8 1.7E-18 5.6E-23 166.9 14.4 211 197-458 70-287 (336)
27 2z66_A Variable lymphocyte rec 99.8 2.7E-20 9.1E-25 177.1 1.6 211 197-459 28-240 (306)
28 3zyi_A Leucine-rich repeat-con 99.8 5.3E-20 1.8E-24 184.9 3.7 228 173-455 74-303 (452)
29 3oja_B Anopheles plasmodium-re 99.8 7.7E-20 2.6E-24 190.1 4.2 233 175-457 76-339 (597)
30 1ogq_A PGIP-2, polygalacturona 99.8 6.3E-21 2.1E-25 182.0 -4.9 210 197-460 50-262 (313)
31 4glp_A Monocyte differentiatio 99.8 5.2E-20 1.8E-24 175.4 1.5 217 195-458 89-310 (310)
32 3ogk_B Coronatine-insensitive 99.8 2.4E-17 8.4E-22 171.1 21.3 239 179-459 275-530 (592)
33 4fmz_A Internalin; leucine ric 99.8 3.1E-18 1.1E-22 165.8 13.6 229 160-455 110-346 (347)
34 1io0_A Tropomodulin; LRR prote 99.8 7.9E-18 2.7E-22 147.5 14.8 139 279-429 26-167 (185)
35 3o6n_A APL1; leucine-rich repe 99.8 7.9E-20 2.7E-24 180.0 1.8 229 175-456 94-353 (390)
36 3t6q_A CD180 antigen; protein- 99.8 1.4E-19 4.9E-24 188.5 2.8 94 351-459 447-540 (606)
37 2id5_A Lingo-1, leucine rich r 99.8 3.8E-19 1.3E-23 179.9 5.6 232 175-459 57-289 (477)
38 3rfs_A Internalin B, repeat mo 99.8 2.5E-19 8.5E-24 167.4 3.8 203 194-460 38-240 (272)
39 1wwl_A Monocyte differentiatio 99.7 1.1E-18 3.7E-23 166.4 8.0 210 175-428 96-311 (312)
40 3t6q_A CD180 antigen; protein- 99.7 5.2E-19 1.8E-23 184.3 5.9 135 175-334 58-195 (606)
41 2ft3_A Biglycan; proteoglycan, 99.7 9.7E-20 3.3E-24 175.3 0.3 241 175-455 55-307 (332)
42 3oja_B Anopheles plasmodium-re 99.7 2E-19 6.9E-24 186.9 2.7 229 175-456 100-359 (597)
43 3o53_A Protein LRIM1, AGAP0063 99.7 4.5E-19 1.5E-23 169.5 4.8 215 175-455 35-250 (317)
44 4eco_A Uncharacterized protein 99.7 3.4E-19 1.2E-23 186.5 3.6 136 175-331 207-366 (636)
45 4ecn_A Leucine-rich repeat pro 99.7 7.2E-19 2.5E-23 188.0 5.7 199 221-459 444-661 (876)
46 1h6u_A Internalin H; cell adhe 99.7 3E-18 1E-22 163.0 9.2 192 196-456 40-231 (308)
47 1xku_A Decorin; proteoglycan, 99.7 9.5E-19 3.2E-23 168.2 5.8 225 175-457 53-278 (330)
48 3zyi_A Leucine-rich repeat-con 99.7 9.5E-19 3.2E-23 175.7 6.0 208 197-458 75-282 (452)
49 4glp_A Monocyte differentiatio 99.7 5.5E-19 1.9E-23 168.4 4.0 212 176-428 93-309 (310)
50 4eco_A Uncharacterized protein 99.7 1.6E-19 5.4E-24 188.9 0.0 215 189-455 198-446 (636)
51 3zyj_A Leucine-rich repeat-con 99.7 8.1E-19 2.8E-23 175.6 5.2 209 197-459 64-272 (440)
52 2z62_A TOLL-like receptor 4, v 99.7 3.7E-19 1.2E-23 166.6 2.4 208 197-458 28-240 (276)
53 1ozn_A Reticulon 4 receptor; N 99.7 7.7E-19 2.6E-23 165.2 4.5 231 174-459 32-265 (285)
54 2z80_A TOLL-like receptor 2, v 99.7 3.4E-19 1.2E-23 173.1 1.7 67 353-427 249-315 (353)
55 1p9a_G Platelet glycoprotein I 99.7 5.6E-19 1.9E-23 166.5 2.9 37 353-394 148-185 (290)
56 3o53_A Protein LRIM1, AGAP0063 99.7 4.4E-19 1.5E-23 169.6 1.8 213 175-451 59-271 (317)
57 2z7x_B TOLL-like receptor 1, v 99.7 3.6E-18 1.2E-22 174.6 8.4 127 174-330 21-150 (520)
58 3oja_A Leucine-rich immune mol 99.7 9.5E-19 3.2E-23 177.1 3.6 215 175-455 35-250 (487)
59 3vq2_A TLR4, TOLL-like recepto 99.7 6.5E-19 2.2E-23 183.6 2.4 161 256-457 398-560 (606)
60 3vq2_A TLR4, TOLL-like recepto 99.7 6.9E-19 2.4E-23 183.4 2.4 226 175-456 308-535 (606)
61 4ecn_A Leucine-rich repeat pro 99.7 3.3E-18 1.1E-22 182.9 7.5 168 189-394 481-657 (876)
62 2o6q_A Variable lymphocyte rec 99.7 1.4E-18 4.9E-23 162.1 3.9 182 197-426 37-218 (270)
63 1pgv_A TMD-1, tropomodulin TMD 99.7 9E-17 3.1E-21 139.7 14.0 134 279-424 31-168 (197)
64 1o6v_A Internalin A; bacterial 99.7 9E-17 3.1E-21 161.9 15.8 106 193-331 173-278 (466)
65 3oja_A Leucine-rich immune mol 99.7 2.1E-18 7E-23 174.6 3.5 212 175-450 59-270 (487)
66 2z7x_B TOLL-like receptor 1, v 99.7 1.5E-17 5.1E-22 170.0 9.5 228 175-458 248-484 (520)
67 2p1m_B Transport inhibitor res 99.7 3.4E-16 1.2E-20 162.4 18.9 223 193-458 285-522 (594)
68 2z62_A TOLL-like receptor 4, v 99.7 3.7E-18 1.3E-22 159.8 2.3 220 174-439 28-252 (276)
69 2z63_A TOLL-like receptor 4, v 99.7 2.3E-18 7.9E-23 178.0 0.5 228 177-460 307-536 (570)
70 1ziw_A TOLL-like receptor 3; i 99.7 4.6E-17 1.6E-21 171.9 10.3 239 174-459 25-265 (680)
71 2ft3_A Biglycan; proteoglycan, 99.7 2.1E-18 7.2E-23 165.9 0.0 228 176-453 104-331 (332)
72 2o6q_A Variable lymphocyte rec 99.7 8.7E-18 3E-22 156.7 4.1 202 198-456 17-219 (270)
73 3bz5_A Internalin-J, INLJ; leu 99.7 7.6E-17 2.6E-21 161.7 11.2 182 176-427 66-247 (457)
74 1o6v_A Internalin A; bacterial 99.7 1.7E-16 5.9E-21 159.8 13.7 212 175-456 178-389 (466)
75 1h6u_A Internalin H; cell adhe 99.7 7.7E-17 2.6E-21 153.2 10.5 189 176-427 43-231 (308)
76 1ziw_A TOLL-like receptor 3; i 99.7 1.9E-17 6.4E-22 174.9 6.9 234 175-455 50-309 (680)
77 3rfs_A Internalin B, repeat mo 99.7 4.2E-17 1.4E-21 152.2 8.4 184 223-459 39-222 (272)
78 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.4E-17 8.4E-22 170.1 7.3 67 351-427 351-417 (562)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.4E-17 4.9E-22 171.8 4.7 247 174-459 52-420 (562)
80 2z81_A CD282 antigen, TOLL-lik 99.7 1.8E-16 6.2E-21 163.0 12.0 206 196-459 309-514 (549)
81 1io0_A Tropomodulin; LRR prote 99.7 1.1E-15 3.7E-20 133.9 15.2 135 220-398 31-168 (185)
82 3j0a_A TOLL-like receptor 5; m 99.7 8.1E-18 2.8E-22 181.8 1.4 243 175-458 49-354 (844)
83 2z81_A CD282 antigen, TOLL-lik 99.7 1.8E-17 6.3E-22 170.4 3.9 237 174-456 26-265 (549)
84 3m19_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 150.7 5.5 203 198-454 15-220 (251)
85 3ogk_B Coronatine-insensitive 99.7 2E-16 6.8E-21 164.2 11.5 196 223-458 291-504 (592)
86 3g06_A SSPH2 (leucine-rich rep 99.7 3.7E-17 1.2E-21 169.2 4.5 212 175-459 82-301 (622)
87 1p9a_G Platelet glycoprotein I 99.6 6.4E-17 2.2E-21 152.4 5.6 203 193-455 6-208 (290)
88 2p1m_B Transport inhibitor res 99.6 7.2E-16 2.5E-20 160.0 13.9 191 225-459 289-498 (594)
89 3m19_A Variable lymphocyte rec 99.6 9.8E-17 3.3E-21 147.9 6.1 180 225-457 14-194 (251)
90 4ezg_A Putative uncharacterize 99.6 3.8E-16 1.3E-20 138.3 9.2 152 256-456 43-195 (197)
91 1h6t_A Internalin B; cell adhe 99.6 2.8E-16 9.7E-21 148.0 8.7 171 195-427 44-214 (291)
92 3j0a_A TOLL-like receptor 5; m 99.6 2.6E-17 8.9E-22 177.8 1.2 61 176-239 99-162 (844)
93 1h6t_A Internalin B; cell adhe 99.6 6.4E-16 2.2E-20 145.6 8.1 172 224-458 45-216 (291)
94 3bz5_A Internalin-J, INLJ; leu 99.6 1.3E-15 4.6E-20 152.6 10.3 207 175-458 43-249 (457)
95 2z63_A TOLL-like receptor 4, v 99.6 8.2E-17 2.8E-21 166.3 0.0 229 175-459 283-511 (570)
96 4ezg_A Putative uncharacterize 99.6 8.7E-16 3E-20 136.0 5.8 130 256-427 65-195 (197)
97 2xwt_C Thyrotropin receptor; s 99.6 9E-17 3.1E-21 146.9 -1.6 198 197-453 31-237 (239)
98 3cvr_A Invasion plasmid antige 99.6 4.6E-16 1.6E-20 159.1 3.5 165 197-434 80-251 (571)
99 1xeu_A Internalin C; cellular 99.6 2.2E-15 7.5E-20 139.7 7.1 81 353-456 106-186 (263)
100 2xwt_C Thyrotropin receptor; s 99.6 1.4E-16 4.8E-21 145.6 -1.4 180 225-456 31-219 (239)
101 3g06_A SSPH2 (leucine-rich rep 99.6 1.1E-15 3.9E-20 158.0 4.1 197 174-455 61-274 (622)
102 1m9s_A Internalin B; cell inva 99.6 3.9E-15 1.3E-19 153.8 8.1 172 194-427 40-211 (605)
103 1m9s_A Internalin B; cell inva 99.5 4.1E-15 1.4E-19 153.6 8.0 151 193-395 61-211 (605)
104 2ra8_A Uncharacterized protein 99.5 2.9E-14 9.8E-19 137.7 12.5 198 223-453 137-341 (362)
105 2o6s_A Variable lymphocyte rec 99.5 2.1E-15 7.1E-20 134.7 4.1 156 257-460 28-183 (208)
106 1jl5_A Outer protein YOPM; leu 99.5 1E-14 3.6E-19 146.0 7.9 119 175-331 132-250 (454)
107 1jl5_A Outer protein YOPM; leu 99.5 2E-14 6.9E-19 143.9 10.0 32 177-209 176-207 (454)
108 1pgv_A TMD-1, tropomodulin TMD 99.5 4.8E-14 1.6E-18 122.6 9.4 133 312-456 35-171 (197)
109 3cvr_A Invasion plasmid antige 99.5 2.6E-14 8.7E-19 146.2 6.0 141 256-458 99-246 (571)
110 2xot_A Amphoterin-induced prot 99.5 1.2E-14 4.2E-19 141.2 3.3 177 200-427 21-203 (361)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 2.3E-14 8E-19 129.1 4.6 155 227-427 13-167 (220)
112 3e6j_A Variable lymphocyte rec 99.5 4.4E-14 1.5E-18 128.1 6.3 166 226-439 20-187 (229)
113 1xeu_A Internalin C; cellular 99.5 7.9E-14 2.7E-18 129.2 7.4 147 224-427 40-186 (263)
114 3e6j_A Variable lymphocyte rec 99.4 1.2E-13 4E-18 125.3 8.2 133 225-395 40-173 (229)
115 2v9t_B SLIT homolog 2 protein 99.4 4.6E-14 1.6E-18 127.1 4.8 135 257-427 32-166 (220)
116 2xot_A Amphoterin-induced prot 99.4 1.2E-14 4.2E-19 141.2 -0.2 179 178-395 22-203 (361)
117 1dce_A Protein (RAB geranylger 99.4 2.8E-15 9.4E-20 153.9 -5.1 87 352-457 462-548 (567)
118 4g8a_A TOLL-like receptor 4; l 99.4 1.6E-13 5.3E-18 143.3 7.5 186 198-428 53-239 (635)
119 2v70_A SLIT-2, SLIT homolog 2 99.4 7.8E-14 2.7E-18 125.6 4.1 155 199-395 13-167 (220)
120 1dce_A Protein (RAB geranylger 99.4 6.2E-15 2.1E-19 151.3 -3.6 206 194-449 346-567 (567)
121 2o6s_A Variable lymphocyte rec 99.4 5.7E-13 1.9E-17 118.8 9.4 157 259-459 9-165 (208)
122 4g8a_A TOLL-like receptor 4; l 99.4 1.3E-13 4.6E-18 143.8 5.9 185 225-455 52-237 (635)
123 2v9t_B SLIT homolog 2 protein 99.4 2E-13 6.8E-18 123.0 5.4 153 200-395 14-166 (220)
124 2ell_A Acidic leucine-rich nuc 99.4 2.1E-13 7.2E-18 117.2 4.9 138 288-456 23-161 (168)
125 4b8c_D Glucose-repressible alc 99.4 3.7E-14 1.3E-18 150.0 0.1 115 282-428 217-331 (727)
126 2ell_A Acidic leucine-rich nuc 99.4 2E-13 6.8E-18 117.4 4.5 137 257-427 24-161 (168)
127 2je0_A Acidic leucine-rich nuc 99.4 5E-13 1.7E-17 112.4 5.5 132 289-451 17-149 (149)
128 2je0_A Acidic leucine-rich nuc 99.4 8.4E-13 2.9E-17 111.0 6.8 134 256-422 16-149 (149)
129 2ra8_A Uncharacterized protein 99.3 6.3E-13 2.1E-17 128.3 5.9 198 190-424 132-341 (362)
130 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-12 5.1E-17 112.8 4.8 82 290-394 43-126 (176)
131 1w8a_A SLIT protein; signaling 99.3 1.7E-12 5.7E-17 114.3 4.0 132 259-428 10-141 (192)
132 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-12 5.3E-17 112.7 2.9 135 287-454 17-152 (176)
133 1w8a_A SLIT protein; signaling 99.2 3.7E-12 1.3E-16 112.0 4.8 131 227-395 10-140 (192)
134 4ay9_X Follicle-stimulating ho 99.2 1.4E-13 4.8E-18 133.1 -5.3 19 377-395 198-216 (350)
135 1ds9_A Outer arm dynein; leuci 99.2 3E-13 1E-17 119.7 -3.6 142 281-457 40-187 (198)
136 4b8c_D Glucose-repressible alc 99.2 2.9E-12 9.8E-17 135.5 2.3 114 314-459 220-333 (727)
137 2wfh_A SLIT homolog 2 protein 99.2 7.8E-12 2.7E-16 110.0 3.8 129 259-427 12-140 (193)
138 2o6r_A Variable lymphocyte rec 99.2 1.6E-11 5.5E-16 106.3 5.5 144 257-439 7-152 (177)
139 2wfh_A SLIT homolog 2 protein 99.1 3.1E-11 1.1E-15 106.1 6.0 126 228-394 13-139 (193)
140 2o6r_A Variable lymphocyte rec 99.1 3.9E-11 1.3E-15 103.9 6.2 110 257-395 28-138 (177)
141 4ay9_X Follicle-stimulating ho 99.1 2.3E-12 7.7E-17 124.6 -3.4 221 182-459 17-240 (350)
142 3e4g_A ATP synthase subunit S, 99.1 1.2E-10 4.2E-15 99.2 6.8 102 318-438 61-167 (176)
143 1ds9_A Outer arm dynein; leuci 99.0 1.1E-12 3.9E-17 115.9 -8.5 137 285-458 14-156 (198)
144 3sb4_A Hypothetical leucine ri 99.0 6.9E-11 2.4E-15 113.1 1.2 125 290-449 203-328 (329)
145 3g39_A Variable lymphocyte rec 99.0 1.4E-10 4.6E-15 99.8 2.8 119 289-439 9-130 (170)
146 3g39_A Variable lymphocyte rec 99.0 6.8E-10 2.3E-14 95.4 6.3 108 257-396 9-117 (170)
147 2r9u_A Variable lymphocyte rec 98.9 2.7E-10 9.3E-15 98.3 3.4 118 290-439 13-133 (174)
148 2r9u_A Variable lymphocyte rec 98.9 9.8E-10 3.4E-14 94.7 5.2 106 258-395 13-119 (174)
149 3e4g_A ATP synthase subunit S, 98.9 9E-10 3.1E-14 93.8 4.2 94 289-399 61-158 (176)
150 3sb4_A Hypothetical leucine ri 98.8 2.3E-09 8E-14 102.4 3.3 86 352-457 225-312 (329)
151 2ifg_A High affinity nerve gro 98.6 1.9E-08 6.6E-13 96.7 4.0 106 292-428 11-118 (347)
152 2ifg_A High affinity nerve gro 98.5 1E-07 3.5E-12 91.6 5.1 89 285-394 27-116 (347)
153 4fdw_A Leucine rich hypothetic 98.4 3E-08 1E-12 97.2 -0.1 207 191-455 151-358 (401)
154 4fdw_A Leucine rich hypothetic 98.1 3.6E-07 1.2E-11 89.5 0.3 209 191-454 174-382 (401)
155 3rw6_A Nuclear RNA export fact 97.9 2.6E-05 8.8E-10 71.3 9.0 16 288-303 169-184 (267)
156 3rw6_A Nuclear RNA export fact 97.9 1.5E-05 5E-10 72.9 6.7 37 294-332 148-184 (267)
157 4fs7_A Uncharacterized protein 95.0 0.0043 1.5E-07 60.2 0.2 82 351-452 295-376 (394)
158 3rfe_A Platelet glycoprotein I 94.8 0.013 4.3E-07 47.1 2.5 37 353-394 31-68 (130)
159 3rfe_A Platelet glycoprotein I 94.4 0.017 5.7E-07 46.3 2.2 69 356-439 11-82 (130)
160 4gt6_A Cell surface protein; l 94.2 0.055 1.9E-06 52.2 6.0 132 283-454 259-390 (394)
161 4gt6_A Cell surface protein; l 94.2 0.14 4.7E-06 49.4 8.6 108 314-453 261-368 (394)
162 4fs7_A Uncharacterized protein 91.1 0.23 7.9E-06 47.8 5.4 83 315-423 294-376 (394)
163 4h09_A Hypothetical leucine ri 89.1 0.22 7.6E-06 47.5 3.4 59 351-422 284-342 (379)
164 4h09_A Hypothetical leucine ri 83.0 0.89 3E-05 43.2 4.1 130 286-452 214-343 (379)
165 1lm8_V VHL, VON hippel-lindau 46.5 19 0.00064 29.3 3.9 38 3-43 101-138 (160)
166 2jz3_A Suppressor of cytokine 45.1 34 0.0012 20.5 3.9 16 4-19 1-16 (40)
167 1fs1_A SKP2 F-BOX, cyclin A/CD 44.1 17 0.00057 23.1 2.7 27 26-52 6-32 (53)
168 4ajy_V VON hippel-lindau disea 43.6 21 0.0007 29.1 3.7 37 3-42 104-140 (163)
169 2e31_A FBS1, F-box only protei 34.5 43 0.0015 30.4 4.8 69 26-112 48-119 (297)
170 2lz0_A Uncharacterized protein 22.4 60 0.002 23.9 2.9 35 350-391 17-53 (100)
No 1
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.94 E-value=5.6e-26 Score=221.75 Aligned_cols=266 Identities=16% Similarity=0.133 Sum_probs=215.8
Q ss_pred cceeeeccccchHh-----hhhhhcCC-CcCEEEeccCCChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHH
Q 012515 176 ARCLRLQNALCVEE-----TCQLLRES-KLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRS 248 (462)
Q Consensus 176 ~~~l~l~~~~~~~~-----~~~l~~~~-~L~~L~L~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 248 (462)
++.+++.++..... ...+.+++ +|++|+|++|.+... ...+...+....++|++|+|++|.+++.++..++..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 45555555554442 25566777 899999999997665 444444444434899999999999999888888887
Q ss_pred HhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCC-CCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecC
Q 012515 249 LCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSG 327 (462)
Q Consensus 249 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 327 (462)
+... .++|++|++++|.+...+. ..+...+..+ ++|++|+|++|.+++.++..++..+....++|++|+|++
T Consensus 104 l~~~---~~~L~~L~Ls~N~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 104 LAAI---PFTITVLDLGWNDFSSKSS----SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHTS---CTTCCEEECCSSCGGGSCH----HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHhC---CCCccEEECcCCcCCcHHH----HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 7662 1789999999999988443 3677777774 699999999999999999999888766545999999999
Q ss_pred CCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhc-CCCCCEEeCCCCCCCchhHHhHHHHHH
Q 012515 328 NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH-IPNLEILDISDNTIEDDGIRSLIPYFV 406 (462)
Q Consensus 328 n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~N~l~~~g~~~l~~~l~ 406 (462)
|.+++ .++..+...+.... ++|++|+|++|+|++.|+..++.++.. +++|++|++++|.|++.|...+.
T Consensus 177 n~l~~----~~~~~l~~~l~~~~--~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~---- 246 (362)
T 3goz_A 177 NNLAS----KNCAELAKFLASIP--ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK---- 246 (362)
T ss_dssp SCGGG----SCHHHHHHHHHTSC--TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH----
T ss_pred CCCch----hhHHHHHHHHHhCC--CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH----
Confidence 99984 45555666777432 599999999999999999999999988 45999999999999999887776
Q ss_pred hhcCCCCCccEEEccCCC---CChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 407 QASERCNPLVELYLENCE---LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 407 ~~l~~~~~L~~L~L~~n~---l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
..+..+++|+.|++++|. ++..++..+.+.+.. .++|+.||+++|+|++..+
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCBCCGGGC
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCcCCCcch
Confidence 556778999999999998 888888888888887 5669999999999998743
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.94 E-value=4.5e-25 Score=217.25 Aligned_cols=265 Identities=17% Similarity=0.143 Sum_probs=206.3
Q ss_pred cceeeeccccchH-----hhhhhhcCCCcCEEEeccCCCh-------HHHHHHHHHHHhcCCCccEEEccCCCCChhHHH
Q 012515 176 ARCLRLQNALCVE-----ETCQLLRESKLQSLVLRWIRFE-------EHVQALCKLLIQNSETLASLEFLHCKLSPSFVE 243 (462)
Q Consensus 176 ~~~l~l~~~~~~~-----~~~~l~~~~~L~~L~L~~~~~~-------~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~ 243 (462)
++.+++.++.+.. +...+..+++|++|+|++|.+. ..+..+...+ ..+++|++|+|++|.+++.+..
T Consensus 34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL-LKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH-TTCTTCCEEECCSCCCCTTTHH
T ss_pred ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH-hhCCcccEEECCCCcCCHHHHH
Confidence 4455555554443 3344567899999999987432 3444444443 4589999999999999998777
Q ss_pred HHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCC---------CCCCEEecCCCCCChhhHHHHHHHHh
Q 012515 244 GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG---------RSLCSLKLRHCHLDRDFGRMVFSSLL 314 (462)
Q Consensus 244 ~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l---------~~L~~L~Ls~n~l~~~~~~~l~~~l~ 314 (462)
.+...+.. +++|++|++++|.+.. .....+...+..+ ++|++|++++|.+++.++..++..+.
T Consensus 113 ~l~~~l~~----~~~L~~L~L~~n~l~~----~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 113 PLIDFLSK----HTPLEHLYLHNNGLGP----QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp HHHHHHHH----CTTCCEEECCSSCCHH----HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred HHHHHHHh----CCCCCEEECcCCCCCH----HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 77766655 7899999999999875 2223455566666 89999999999999878887777654
Q ss_pred hCCCCccEEEecCCCCCCcccccCcccHHH-hhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCC
Q 012515 315 EASSSLSILDLSGNSIGGWLSKYDRSGPLF-SLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 393 (462)
Q Consensus 315 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l 393 (462)
. +++|++|++++|.+++ .+...+.. .+. ++++|+.|+|++|.+++.|+..++..+..+++|++|+|++|.|
T Consensus 185 ~-~~~L~~L~L~~n~l~~----~g~~~l~~~~l~---~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 185 S-HRLLHTVKMVQNGIRP----EGIEHLLLEGLA---YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp H-CTTCCEEECCSSCCCH----HHHHHHHHTTGG---GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred h-CCCcCEEECcCCCCCH----hHHHHHHHHHhh---cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 4 5899999999999983 11111222 444 6689999999999999999999999999999999999999999
Q ss_pred CchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 394 EDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 394 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
++.|...+...+. ...+++|+.|+|++|+++..|+..++..+....++|++|++++|+|++.++
T Consensus 257 ~~~~~~~l~~~l~--~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 257 SARGAAAVVDAFS--KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CHHHHHHHHHHHH--TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred chhhHHHHHHHHh--hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999888775321 134799999999999999999999999984423679999999999998764
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.93 E-value=4.3e-25 Score=217.39 Aligned_cols=258 Identities=20% Similarity=0.188 Sum_probs=207.2
Q ss_pred eeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCC---h---hHHHHHHHHHhccc
Q 012515 180 RLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS---P---SFVEGICRSLCSKR 253 (462)
Q Consensus 180 ~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~---~---~~~~~l~~~l~~~~ 253 (462)
.+.......+...+..+++|++|+|++|.+...........+..+++|++|+|++|.+. + .+...++..+..
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~-- 92 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK-- 92 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh--
Confidence 44444455566777889999999999999776544333333456899999999997544 2 355556666555
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCC---------CCccEEE
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS---------SSLSILD 324 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~---------~~L~~L~ 324 (462)
+++|++|++++|.+...+.. .++..+..+++|++|+|++|.+++.++..++..+.. + ++|++|+
T Consensus 93 --~~~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 93 --CPKLHTVRLSDNAFGPTAQE----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE-LAVNKKAKNAPPLRSII 165 (386)
T ss_dssp --CTTCCEEECCSCCCCTTTHH----HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHH-HHHHHHHHTCCCCCEEE
T ss_pred --CCcccEEECCCCcCCHHHHH----HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHH-HhhhhhcccCCCCcEEE
Confidence 79999999999999884433 677888899999999999999998888888776433 3 7999999
Q ss_pred ecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCCchhHHhHHH
Q 012515 325 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIP 403 (462)
Q Consensus 325 Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~ 403 (462)
+++|.+++ .+...+...+. .+++|++|+|++|+|++.|+..+.+ .+..+++|+.|+|++|.|++.|+..+.
T Consensus 166 L~~n~l~~----~~~~~l~~~l~---~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~- 237 (386)
T 2ca6_A 166 CGRNRLEN----GSMKEWAKTFQ---SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA- 237 (386)
T ss_dssp CCSSCCTG----GGHHHHHHHHH---HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-
T ss_pred CCCCCCCc----HHHHHHHHHHH---hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-
Confidence 99999983 22233445565 4579999999999999999988888 999999999999999999999887776
Q ss_pred HHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhc-CCCCCcEEEccCCCCCCc
Q 012515 404 YFVQASERCNPLVELYLENCELSGRGVSQLLDTLST-LRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 404 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-l~~~L~~L~Ls~N~l~~~ 457 (462)
..+..+++|+.|+|++|+|++.|+..++..+.. ..++|++|+|++|.|++.
T Consensus 238 ---~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 238 ---IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp ---HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred ---HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 456778999999999999999999999999853 145699999999999884
No 4
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=2.7e-24 Score=216.62 Aligned_cols=264 Identities=22% Similarity=0.266 Sum_probs=200.6
Q ss_pred cceeeeccccchH-----hhhhhhcCCCcCEEEeccCCChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHH
Q 012515 176 ARCLRLQNALCVE-----ETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL 249 (462)
Q Consensus 176 ~~~l~l~~~~~~~-----~~~~l~~~~~L~~L~L~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l 249 (462)
++.+++.++.... +...+..+++|++|++++|.+... ...+...+....++|++|++++|.+++.+...+...+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 6667777665543 345556778888888888886544 4445555555567888888888888887777666666
Q ss_pred hcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhc-CCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCC
Q 012515 250 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 328 (462)
Q Consensus 250 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 328 (462)
.. +++|++|++++|.+.+.+ ...+...+. .+++|++|++++|.+++.+...+...+.. +++|++|++++|
T Consensus 224 ~~----~~~L~~L~Ls~n~l~~~~----~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n 294 (461)
T 1z7x_W 224 AS----KASLRELALGSNKLGDVG----MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGN 294 (461)
T ss_dssp HH----CTTCCEEECCSSBCHHHH----HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTC
T ss_pred Hh----CCCccEEeccCCcCChHH----HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCC
Confidence 54 688889999888876611 123333333 47889999999999988887777776543 588999999999
Q ss_pred CCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhh
Q 012515 329 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 408 (462)
Q Consensus 329 ~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~ 408 (462)
.+++ .+...+...+.. ..++|++|++++|.+++.++..++..+..+++|++|++++|.+++.|+..+...+
T Consensus 295 ~i~~----~~~~~l~~~l~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--- 365 (461)
T 1z7x_W 295 ELGD----EGARLLCETLLE--PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL--- 365 (461)
T ss_dssp CCHH----HHHHHHHHHHTS--TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH---
T ss_pred CCch----HHHHHHHHHhcc--CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH---
Confidence 8874 333344455443 2268999999999999999999999999999999999999999999888877532
Q ss_pred cCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012515 409 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 409 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
...+++|++|++++|++++.|+..++..+.. +++|++|++++|+|++.+
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHH
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCHHH
Confidence 1235799999999999999999999999988 677999999999998764
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1.7e-24 Score=218.07 Aligned_cols=265 Identities=24% Similarity=0.255 Sum_probs=187.6
Q ss_pred cceeeeccccch-----HhhhhhhcCCCcCEEEeccCCChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHH
Q 012515 176 ARCLRLQNALCV-----EETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL 249 (462)
Q Consensus 176 ~~~l~l~~~~~~-----~~~~~l~~~~~L~~L~L~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l 249 (462)
++.+++.++... .++..+..+++|++|++++|.+... ...+...+....++|++|++++|.+++.+...+...+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 566667666655 2355556777777777777776543 3444444444456777777777777777766666655
Q ss_pred hcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhc-CCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCC
Q 012515 250 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 328 (462)
Q Consensus 250 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 328 (462)
.. +++|++|++++|.+.+. ....+...+. ..++|++|++++|.+++.+...+...+. .+++|++|++++|
T Consensus 167 ~~----~~~L~~L~L~~n~i~~~----~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 167 RA----KPDFKELTVSNNDINEA----GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSN 237 (461)
T ss_dssp HH----CTTCCEEECCSSBCHHH----HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSS
T ss_pred hh----CCCCCEEECcCCCcchH----HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCC
Confidence 54 56777888887776551 1123333333 3557788888888877777666666543 3477888888888
Q ss_pred CCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhh
Q 012515 329 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 408 (462)
Q Consensus 329 ~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~ 408 (462)
.+++ .+...+...+.. .+++|++|++++|++++.++..++..+..+++|++|++++|.+++.|...+... .
T Consensus 238 ~l~~----~~~~~l~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---l 308 (461)
T 1z7x_W 238 KLGD----VGMAELCPGLLH--PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET---L 308 (461)
T ss_dssp BCHH----HHHHHHHHHHTS--TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH---H
T ss_pred cCCh----HHHHHHHHHHhc--CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH---h
Confidence 7763 222223333332 357899999999999998888899999999999999999999998888877652 2
Q ss_pred cCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 409 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 409 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
....++|+.|++++|.+++.++..++..+.. +++|++|++++|.|++.++
T Consensus 309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHH
T ss_pred ccCCccceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccH
Confidence 2344699999999999999999999999888 5679999999999987654
No 6
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.93 E-value=7.6e-25 Score=213.70 Aligned_cols=258 Identities=19% Similarity=0.180 Sum_probs=207.1
Q ss_pred eeccccchHhhhhhh-cCCCcCEEEeccCCChHH-HHHHHHHHHhcCC-CccEEEccCCCCChhHHHHHHHHHhcccccC
Q 012515 180 RLQNALCVEETCQLL-RESKLQSLVLRWIRFEEH-VQALCKLLIQNSE-TLASLEFLHCKLSPSFVEGICRSLCSKRKRI 256 (462)
Q Consensus 180 ~l~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~-~~~l~~~l~~~~~-~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~ 256 (462)
++..+.....+..+. ..++|++|++++|.+... ...++..+ ..++ +|++|+|++|.+++.++..++..+... .
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~---~ 79 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAF-ANTPASVTSLNLSGNSLGFKNSDELVQILAAI---P 79 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS---C
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHH-HhCCCceeEEECcCCCCCHHHHHHHHHHHhcc---C
Confidence 444444444444444 445699999999997654 33343443 4577 899999999999999898888877653 3
Q ss_pred CCccEEecCCCCCCCCCCchhHHHHHHhhcCC-CCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012515 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
++|++|++++|.+.... +..+...+..+ ++|++|++++|.+++.++..++..+....++|++|+|++|.+++
T Consensus 80 ~~L~~L~Ls~n~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--- 152 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKS----SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI--- 152 (362)
T ss_dssp TTCCEEECCSSCGGGSC----HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG---
T ss_pred CCccEEECcCCcCChHH----HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH---
Confidence 88999999999998744 34677788887 79999999999999999998888765434699999999999984
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCC-CCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC
Q 012515 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
.+...++..+.... ++|++|+|++|++++.+...+...+..++ +|++|++++|.|++.|+..+...+. ...++
T Consensus 153 -~~~~~l~~~l~~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~---~~~~~ 226 (362)
T 3goz_A 153 -KSSDELIQILAAIP--ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS---SIPNH 226 (362)
T ss_dssp -SCHHHHHHHHHTSC--TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH---HSCTT
T ss_pred -HHHHHHHHHHhcCC--ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh---cCCCC
Confidence 55566777777443 59999999999999999999999999995 9999999999999999888876432 22369
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
|+.|+|++|++++.|...+...+.. .++|++|++++|.++
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~-l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDS-LKHLQTVYLDYDIVK 266 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTT-TTTCSEEEEEHHHHT
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhc-CCCccEEEeccCCcc
Confidence 9999999999999999988877777 566999999999843
No 7
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=195.52 Aligned_cols=187 Identities=20% Similarity=0.251 Sum_probs=97.5
Q ss_pred CCcCEEEeccCCChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCc
Q 012515 197 SKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (462)
+.|++|+|++|.+... ...+...+....++|++|+|++|.+++.+...++..+ .+|++|++++|.+++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-------~~L~~L~Ls~n~l~~~--- 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-------LRARKLGLQLNSLGPE--- 141 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH-------HTEEEEECCSSCCCHH---
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH-------HhccHhhcCCCCCCHH---
Confidence 4466677766665443 3333333333335667777777666666666555543 2355556665555441
Q ss_pred hhHHHHHHhhc-CCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCC
Q 012515 276 SVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (462)
Q Consensus 276 ~~~~~l~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 354 (462)
....+...+. ..++|++|+|++|.+++.+...++.++.. .++|++|+|++|.+++ .+...++..+. ..++
T Consensus 142 -~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~----~g~~~L~~~L~---~~~~ 212 (372)
T 3un9_A 142 -ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGD----EGLELLAAQLD---RNRQ 212 (372)
T ss_dssp -HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHH----HHHHHHHHHGG---GCSC
T ss_pred -HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCc----HHHHHHHHHHh---cCCC
Confidence 1223333332 24555555555555555555555554432 3455555555555552 22233334444 2245
Q ss_pred ccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHH
Q 012515 355 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 402 (462)
Q Consensus 355 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~ 402 (462)
|++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..+.
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 555555555555555555555555555555555555555555555443
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=7.9e-21 Score=183.15 Aligned_cols=216 Identities=18% Similarity=0.208 Sum_probs=166.6
Q ss_pred hhhcCCCcCEEEeccCCChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCC-CC
Q 012515 192 QLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SF 269 (462)
Q Consensus 192 ~l~~~~~L~~L~L~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~-~~ 269 (462)
.++.+++|++|++++|.+... .... ...+++|++|++++|.+++..+..+.. +++|++|++++| .+
T Consensus 88 ~~~~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~~--------~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLAK--------NSNLVRLNLSGCSGF 155 (336)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHTT--------CTTCSEEECTTCBSC
T ss_pred hhccCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHhc--------CCCCCEEECCCCCCC
Confidence 355678899999999986543 4333 567899999999999999877776644 789999999999 56
Q ss_pred CCCCCchhHHHHHHhhcCCCCCCEEecCCC-CCChhhHHHHHHHHhhCCC-CccEEEecCC--CCCCcccccCcccHHHh
Q 012515 270 IENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASS-SLSILDLSGN--SIGGWLSKYDRSGPLFS 345 (462)
Q Consensus 270 ~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n--~l~~~~~~~~~~~l~~~ 345 (462)
++ ..+...+..+++|++|++++| .+++.+...+.. .++ +|++|++++| .+++ ..++..
T Consensus 156 ~~-------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~l~~~L~~L~l~~~~~~~~~-------~~l~~~ 217 (336)
T 2ast_B 156 SE-------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETITQLNLSGYRKNLQK-------SDLSTL 217 (336)
T ss_dssp CH-------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH----HSCTTCCEEECCSCGGGSCH-------HHHHHH
T ss_pred CH-------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH----hcccCCCEEEeCCCcccCCH-------HHHHHH
Confidence 54 347777888999999999999 999876555433 357 9999999999 4542 123455
Q ss_pred hhCCCCCCCccEEEccCCC-CCcchHHHHHHHhhcCCCCCEEeCCCC-CCCchhHHhHHHHHHhhcCCCCCccEEEccCC
Q 012515 346 LGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRSLIPYFVQASERCNPLVELYLENC 423 (462)
Q Consensus 346 l~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n 423 (462)
+. ++++|++|++++|. +++. .+..+.++++|++|++++| .+.+.++. .+..+++|+.|++++|
T Consensus 218 ~~---~~~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 218 VR---RCPNLVHLDLSDSVMLKND----CFQEFFQLNYLQHLSLSRCYDIIPETLL--------ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HH---HCTTCSEEECTTCTTCCGG----GGGGGGGCTTCCEEECTTCTTCCGGGGG--------GGGGCTTCCEEECTTS
T ss_pred Hh---hCCCCCEEeCCCCCcCCHH----HHHHHhCCCCCCEeeCCCCCCCCHHHHH--------HHhcCCCCCEEeccCc
Confidence 55 45899999999999 7874 3456788999999999999 57765542 3455799999999999
Q ss_pred CCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcccc
Q 012515 424 ELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 460 (462)
Q Consensus 424 ~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~~ 460 (462)
+++.+...+... ++.|++++|++++..|.
T Consensus 283 -i~~~~~~~l~~~-------l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 283 -VPDGTLQLLKEA-------LPHLQINCSHFTTIARP 311 (336)
T ss_dssp -SCTTCHHHHHHH-------STTSEESCCCSCCTTCS
T ss_pred -cCHHHHHHHHhh-------CcceEEecccCccccCC
Confidence 888776665432 55577899999987764
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=7.9e-23 Score=218.72 Aligned_cols=244 Identities=21% Similarity=0.224 Sum_probs=160.9
Q ss_pred ceeeeccccch-HhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccc
Q 012515 177 RCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 255 (462)
Q Consensus 177 ~~l~l~~~~~~-~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~ 255 (462)
+.+++.++... ..+..+..+++|++|++++|.+....+.. +..+++|++|++++|.++...+..+..
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~-------- 488 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE----LMYVKTLETLILDFNDLTGEIPSGLSN-------- 488 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGG--------
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH----HcCCCCceEEEecCCcccCcCCHHHhc--------
Confidence 33444444333 23334445555555555555443221111 234556666666666555433332222
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012515 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
+++|++|++++|.+.. .++..+..+++|++|+|++|.+.+..+..+ ..+++|+.|++++|.+++.+|
T Consensus 489 l~~L~~L~L~~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTG--------EIPKWIGRLENLAILKLSNNSFSGNIPAEL-----GDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG-----GGCTTCCEEECCSSEEESBCC
T ss_pred CCCCCEEEccCCccCC--------cCChHHhcCCCCCEEECCCCcccCcCCHHH-----cCCCCCCEEECCCCccCCcCC
Confidence 5667777777777765 355566677778888888887776555543 346778888888887776554
Q ss_pred ccCcccH--------------------------------------HH---------------------hhhCCCCCCCcc
Q 012515 336 KYDRSGP--------------------------------------LF---------------------SLGAGKSLQSLR 356 (462)
Q Consensus 336 ~~~~~~l--------------------------------------~~---------------------~l~~~~~l~~L~ 356 (462)
....... +. ....+..+.+|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 2100000 00 000123457899
Q ss_pred EEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHH
Q 012515 357 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 436 (462)
Q Consensus 357 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 436 (462)
.|+|++|+++. .+|..++.+++|+.|+|++|.++.. +| ..++.+++|+.|+|++|++++. +++.
T Consensus 636 ~LdLs~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~-----ip---~~l~~L~~L~~LdLs~N~l~g~----ip~~ 699 (768)
T 3rgz_A 636 FLDMSYNMLSG----YIPKEIGSMPYLFILNLGHNDISGS-----IP---DEVGDLRGLNILDLSSNKLDGR----IPQA 699 (768)
T ss_dssp EEECCSSCCBS----CCCGGGGGCTTCCEEECCSSCCCSC-----CC---GGGGGCTTCCEEECCSSCCEEC----CCGG
T ss_pred EEECcCCcccc----cCCHHHhccccCCEEeCcCCccCCC-----CC---hHHhCCCCCCEEECCCCcccCc----CChH
Confidence 99999999997 4888999999999999999999864 66 6788889999999999999976 7778
Q ss_pred HhcCCCCCcEEEccCCCCCCccccCC
Q 012515 437 LSTLRRPPTSLSIADNNLGRFCANSG 462 (462)
Q Consensus 437 l~~l~~~L~~L~Ls~N~l~~~~~~~~ 462 (462)
+..+ ++|++||+++|++++.+|..|
T Consensus 700 l~~l-~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 700 MSAL-TMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp GGGC-CCCSEEECCSSEEEEECCSSS
T ss_pred HhCC-CCCCEEECcCCcccccCCCch
Confidence 8885 569999999999999998764
No 10
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=186.70 Aligned_cols=213 Identities=18% Similarity=0.157 Sum_probs=172.9
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCCh
Q 012515 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 303 (462)
Q Consensus 224 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~ 303 (462)
+++|++|+|++|.+++.....++..+... ..+|++|++++|.+.+ ..+......+++|++|+|++|.+++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~---~~~L~~L~Ls~n~l~~-------~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSG---RHALDEVNLASCQLDP-------AGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSC---SSCEEEEECTTCCCCH-------HHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhC---CCCceEEEecCCCCCH-------HHHHHHHHHHHhccHhhcCCCCCCH
Confidence 46899999999999999999998887753 4689999999999876 2233333345689999999999999
Q ss_pred hhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCC
Q 012515 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 383 (462)
Q Consensus 304 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 383 (462)
.++..++..+....++|++|+|++|.+++ .+...++..+. .+++|++|+|++|.|++.|+..++.++..+++|
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~L~---~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNNPLTA----AGVAVLMEGLA---GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSSCCHH----HHHHHHHHHHH---TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred HHHHHHHHHHHhcCCccceeeCCCCCCCh----HHHHHHHHHHh---cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 99999999887667899999999999983 45566777777 457899999999999999999999999999999
Q ss_pred CEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEE--ccCCCCCCc
Q 012515 384 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS--IADNNLGRF 457 (462)
Q Consensus 384 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~--Ls~N~l~~~ 457 (462)
++|+|++|.|++.|+..+.. .+..+++|++|+|++|.|++.|+..+.+........|+.+. +..|.++++
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~----~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALAR----AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHH----HHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred CeEECCCCCCCHHHHHHHHH----HHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 99999999999999988875 44566899999999999999999988875543112388888 888877654
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=4e-23 Score=197.30 Aligned_cols=232 Identities=18% Similarity=0.163 Sum_probs=171.7
Q ss_pred ccceeeeccccch---HhhhhhhcCCCcCEEEecc-CCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHh
Q 012515 175 YARCLRLQNALCV---EETCQLLRESKLQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLC 250 (462)
Q Consensus 175 ~~~~l~l~~~~~~---~~~~~l~~~~~L~~L~L~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~ 250 (462)
.++.+++.++... .++..+.++++|++|++++ |.+....+.. +..+++|++|++++|.++...+..+..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~--- 123 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQ--- 123 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGG---
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhC---
Confidence 4555666666555 3566778889999999984 6654332211 356889999999999887544444332
Q ss_pred cccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCC-CccEEEecCCC
Q 012515 251 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS-SLSILDLSGNS 329 (462)
Q Consensus 251 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~ 329 (462)
+.+|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+ ..+. .|++|++++|.
T Consensus 124 -----l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 124 -----IKTLVTLDFSYNALSG--------TLPPSISSLPNLVGITFDGNRISGAIPDSY-----GSFSKLFTSMTISRNR 185 (313)
T ss_dssp -----CTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG-----GCCCTTCCEEECCSSE
T ss_pred -----CCCCCEEeCCCCccCC--------cCChHHhcCCCCCeEECcCCcccCcCCHHH-----hhhhhcCcEEECcCCe
Confidence 7889999999998875 355667788999999999999886555544 3345 89999999999
Q ss_pred CCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhc
Q 012515 330 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS 409 (462)
Q Consensus 330 l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l 409 (462)
+++..| ..+.. +. |+.|++++|++++ .++..+..+++|+.|++++|.++.. . ..+
T Consensus 186 l~~~~~--------~~~~~---l~-L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~-----~----~~~ 240 (313)
T 1ogq_A 186 LTGKIP--------PTFAN---LN-LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAFD-----L----GKV 240 (313)
T ss_dssp EEEECC--------GGGGG---CC-CSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSSEECCB-----G----GGC
T ss_pred eeccCC--------hHHhC---Cc-ccEEECcCCcccC----cCCHHHhcCCCCCEEECCCCceeee-----c----Ccc
Confidence 886555 45553 33 9999999998886 3566788889999999999998752 3 235
Q ss_pred CCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccccC
Q 012515 410 ERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 461 (462)
Q Consensus 410 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 461 (462)
..+++|++|++++|++++. ++..+..+ ++|++|++++|+|++.+|..
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGT----LPQGLTQL-KFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCCTTCCEEECCSSCCEEC----CCGGGGGC-TTCCEEECCSSEEEEECCCS
T ss_pred cccCCCCEEECcCCcccCc----CChHHhcC-cCCCEEECcCCcccccCCCC
Confidence 6678999999999998854 56667774 56999999999998877754
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.3e-21 Score=209.31 Aligned_cols=232 Identities=24% Similarity=0.274 Sum_probs=168.7
Q ss_pred cceeeeccccch-HhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012515 176 ARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 176 ~~~l~l~~~~~~-~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
++.+.+.++... ..+..+.++++|++|++++|.+....+.. +..+++|++|++++|.+....+..+..
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~~~~------- 464 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMY------- 464 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGG-------
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH----HhcCCCCCEEECCCCcccCcCCHHHcC-------
Confidence 556666666554 34556677888888888888755332211 345778888888888777554444332
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcc
Q 012515 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 334 (462)
+++|++|++++|.+.. .++..+..+++|++|++++|++.+..+..+ ..+++|++|++++|.+++..
T Consensus 465 -l~~L~~L~L~~N~l~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 465 -VKTLETLILDFNDLTG--------EIPSGLSNCTNLNWISLSNNRLTGEIPKWI-----GRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp -CTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCEEEC
T ss_pred -CCCceEEEecCCcccC--------cCCHHHhcCCCCCEEEccCCccCCcCChHH-----hcCCCCCEEECCCCcccCcC
Confidence 6788888888888876 455667778888888888888887666544 34688888888888888765
Q ss_pred cccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH---------------------------------------
Q 012515 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS--------------------------------------- 375 (462)
Q Consensus 335 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--------------------------------------- 375 (462)
| ..+. .+++|+.|++++|.++.. +|.
T Consensus 531 p--------~~l~---~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 531 P--------AELG---DCRSLIWLDLNTNLFNGT----IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp C--------GGGG---GCTTCCEEECCSSEEESB----CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred C--------HHHc---CCCCCCEEECCCCccCCc----CChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 5 5555 557888999988876531 222
Q ss_pred -------------------------------HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012515 376 -------------------------------ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 424 (462)
Q Consensus 376 -------------------------------~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 424 (462)
.+..+++|+.||+++|.++.. +| ..++.++.|+.|+|++|+
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~-----ip---~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-----IP---KEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC-----CC---GGGGGCTTCCEEECCSSC
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc-----CC---HHHhccccCCEEeCcCCc
Confidence 233456788999999988754 55 667888999999999999
Q ss_pred CChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcccc
Q 012515 425 LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 460 (462)
Q Consensus 425 l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~~ 460 (462)
+++. +++.+..+ ++|++|||++|++++.+|.
T Consensus 668 l~g~----ip~~l~~L-~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 668 ISGS----IPDEVGDL-RGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp CCSC----CCGGGGGC-TTCCEEECCSSCCEECCCG
T ss_pred cCCC----CChHHhCC-CCCCEEECCCCcccCcCCh
Confidence 9875 77788885 5599999999999988875
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=2.3e-20 Score=187.65 Aligned_cols=251 Identities=18% Similarity=0.144 Sum_probs=128.9
Q ss_pred ccceeeeccccchHh-hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++..... +..+.++++|++|++++|.+...... ...+..+++|++|++++|.++...+..+.
T Consensus 80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------- 150 (455)
T 3v47_A 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFF------- 150 (455)
T ss_dssp TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH--SSTTTTCTTCCEEECCSSBCCSCCCCGGG-------
T ss_pred cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC--cccccCcccCCEEECCCCccCccCccccc-------
Confidence 345566666655443 44555667777777777766543211 01123466777777777766543322211
Q ss_pred ccCCCccEEecCCCCCCCCCCchh--------------------------HHHHHHhhcCCCCCCEEecCCCCCChhhHH
Q 012515 254 KRIHKIENLSIDISSFIENCPSSV--------------------------VVELVSFLSSGRSLCSLKLRHCHLDRDFGR 307 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~--------------------------~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~ 307 (462)
..+.+|++|++++|.+.......+ .......+..+++|++|++++|.+.+..+.
T Consensus 151 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp GGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred CCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 115666666666666554222110 001111123446788888888888777776
Q ss_pred HHHHHHhh----------------------------------CCCCccEEEecCCCCCCcccccCcccHHHhhh------
Q 012515 308 MVFSSLLE----------------------------------ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG------ 347 (462)
Q Consensus 308 ~l~~~l~~----------------------------------~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~------ 347 (462)
.+...+.. ..++|++|++++|.+++..+ ..+.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~ 302 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK--------SVFSHFTDLE 302 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT--------TTTTTCTTCC
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch--------hhcccCCCCC
Confidence 66543110 01244444444444443222 1111
Q ss_pred ---------------CCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCC
Q 012515 348 ---------------AGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 412 (462)
Q Consensus 348 ---------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~ 412 (462)
.+.++++|++|+|++|.+++. .+..+..+++|++|++++|.|++. .+ ..+..+
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l 370 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSYNHIRAL-----GD---QSFLGL 370 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCSSCCCEE-----CT---TTTTTC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCCCccccc-----Ch---hhcccc
Confidence 122445566666666665541 234455566666666666666541 12 345555
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 413 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 413 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
++|+.|++++|+++.. ..+.+.. .++|++|++++|++++..+
T Consensus 371 ~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQLKSV----PDGIFDR-LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCSCC----CTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCccccC----CHhHhcc-CCcccEEEccCCCcccCCC
Confidence 6666666666666652 1122333 2446777777777666554
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=2.1e-20 Score=187.94 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=55.6
Q ss_pred cceeeeccccchH-h-hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 176 ARCLRLQNALCVE-E-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 176 ~~~l~l~~~~~~~-~-~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
++.+++.++.... + +..+.++++|++|++++|.+....... +.++++|++|++++|.+++..+.. ...
T Consensus 56 L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~------~~~ 125 (455)
T 3v47_A 56 LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA----FNGLANLEVLTLTQCNLDGAVLSG------NFF 125 (455)
T ss_dssp CCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT----TTTCTTCCEEECTTSCCBTHHHHS------STT
T ss_pred ccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh----ccCcccCCEEeCCCCCCCccccCc------ccc
Confidence 3445555544321 1 233445566666666666543321111 234566666666666665433221 001
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHH
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 307 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~ 307 (462)
..+.+|++|++++|.+..... ...+..+++|++|++++|.+.+..+.
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQP-------ASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCC-------CGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred cCcccCCEEECCCCccCccCc-------ccccCCCCcccEEeCCCCcccccChh
Confidence 114566666666666554111 11245556666666666666554333
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=4.5e-20 Score=179.23 Aligned_cols=235 Identities=17% Similarity=0.143 Sum_probs=142.7
Q ss_pred ccceeeeccccchHhhh-hhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++....++. .+.++++|++|++++|.+....... +.++++|++|++++|.++......+..
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 122 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS----FSSLGSLEHLDLSYNYLSNLSSSWFKP------ 122 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSSCCHHHHTT------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh----cCCCCCCCEEECCCCcCCcCCHhHhCC------
Confidence 56677777776665554 5667888899999888765432221 346788899999988887544443332
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCC-CCChhhHHHHHHHHhhCCCCccEEEecCCCCCC
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 332 (462)
+++|++|++++|.+..... ...+..+++|++|++++| .+....+.. +..+++|++|++++|.+++
T Consensus 123 --l~~L~~L~L~~n~l~~l~~-------~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 123 --LSSLTFLNLLGNPYKTLGE-------TSLFSHLTKLQILRVGNMDTFTKIQRKD-----FAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp --CTTCSEEECTTCCCSSSCS-------SCSCTTCTTCCEEEEEESSSCCEECTTT-----TTTCCEEEEEEEEETTCCE
T ss_pred --CccCCEEECCCCCCcccCc-------hhhhccCCCCcEEECCCCccccccCHHH-----ccCCCCCCEEECCCCCcCc
Confidence 6788899998888876221 024567788888888888 455533332 2446788888888888876
Q ss_pred cccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCC
Q 012515 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 411 (462)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~ 411 (462)
..+ ..+. .+++|++|++++|+++. ++. .+..+++|+.|++++|.+++.+...+ .....
T Consensus 189 ~~~--------~~l~---~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~~~~ 247 (353)
T 2z80_A 189 YEP--------KSLK---SIQNVSHLILHMKQHIL-----LLEIFVDVTSSVECLELRDTDLDTFHFSEL-----STGET 247 (353)
T ss_dssp ECT--------TTTT---TCSEEEEEEEECSCSTT-----HHHHHHHHTTTEEEEEEESCBCTTCCCC-----------C
T ss_pred cCH--------HHHh---ccccCCeecCCCCcccc-----chhhhhhhcccccEEECCCCcccccccccc-----ccccc
Confidence 433 3333 55788888888888865 443 34457788888888887765321111 11122
Q ss_pred CCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 412 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 412 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
...++.++++++.+++.+...+++.+.. .++|++|++++|+|+
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQ-ISGLLELEFSRNQLK 290 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHT-CTTCCEEECCSSCCC
T ss_pred cchhhccccccccccCcchhhhHHHHhc-ccCCCEEECCCCCCC
Confidence 2344444444444444444444444444 223444444444443
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=5.3e-21 Score=183.71 Aligned_cols=223 Identities=19% Similarity=0.183 Sum_probs=133.9
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012515 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.+..+++.++....++..+.++++|++|++++|.+...... +..+++|++|+|++|.++ ..+..+.
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-----~~~l~~L~~L~Ls~n~l~-~lp~~l~-------- 147 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-----MQQFAGLETLTLARNPLR-ALPASIA-------- 147 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-----GGGGTTCSEEEEESCCCC-CCCGGGG--------
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-----HhccCCCCEEECCCCccc-cCcHHHh--------
Confidence 34555666665555566666677777777777765522211 245677777777777766 2222221
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHh---------hcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEe
Q 012515 255 RIHKIENLSIDISSFIENCPSSVVVELVSF---------LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL 325 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~---------l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 325 (462)
.+.+|++|++++|.+.. .++.. +..+++|++|++++|.++. .+..+ ..+++|++|++
T Consensus 148 ~l~~L~~L~L~~n~~~~--------~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l-----~~l~~L~~L~L 213 (328)
T 4fcg_A 148 SLNRLRELSIRACPELT--------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASI-----ANLQNLKSLKI 213 (328)
T ss_dssp GCTTCCEEEEEEETTCC--------CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGG-----GGCTTCCEEEE
T ss_pred cCcCCCEEECCCCCCcc--------ccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhh-----cCCCCCCEEEc
Confidence 15677777777765544 22222 2336777777777777662 33322 33567777777
Q ss_pred cCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHH
Q 012515 326 SGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF 405 (462)
Q Consensus 326 s~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l 405 (462)
++|.+++ ++..+. ++++|++|+|++|++.. .++..+..+++|+.|++++|.+... +|
T Consensus 214 ~~N~l~~---------l~~~l~---~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~-----~p-- 270 (328)
T 4fcg_A 214 RNSPLSA---------LGPAIH---HLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCSNLLT-----LP-- 270 (328)
T ss_dssp ESSCCCC---------CCGGGG---GCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCTTCCB-----CC--
T ss_pred cCCCCCc---------Cchhhc---cCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCCchhh-----cc--
Confidence 7777764 112333 44677777777776665 3555667777777777777665432 43
Q ss_pred HhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCC
Q 012515 406 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 454 (462)
Q Consensus 406 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l 454 (462)
..+..+++|+.|++++|++... +++.+..+ ++|+.+++..|.+
T Consensus 271 -~~~~~l~~L~~L~L~~n~~~~~----iP~~l~~L-~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 271 -LDIHRLTQLEKLDLRGCVNLSR----LPSLIAQL-PANCIILVPPHLQ 313 (328)
T ss_dssp -TTGGGCTTCCEEECTTCTTCCC----CCGGGGGS-CTTCEEECCGGGS
T ss_pred -hhhhcCCCCCEEeCCCCCchhh----ccHHHhhc-cCceEEeCCHHHH
Confidence 4455667777777777776554 56666664 3477777766654
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=3.2e-20 Score=174.69 Aligned_cols=206 Identities=20% Similarity=0.191 Sum_probs=137.1
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCC-CCCCCCc
Q 012515 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS 275 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~ 275 (462)
+++++|++++|.+....... +..+++|++|++++|.++...+..+.. +++|++|++++|. +..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~~l~~---- 95 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTG--------LALLEQLDLSDNAQLRS---- 95 (285)
T ss_dssp TTCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSCTTCCC----
T ss_pred CCceEEEeeCCcCCccCHHH----cccCCCCCEEECCCCccceeCHhhcCC--------ccCCCEEeCCCCCCccc----
Confidence 56788888887765433221 345778888888888776543333322 6778888888886 554
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCc
Q 012515 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (462)
Q Consensus 276 ~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L 355 (462)
.....+..+++|++|++++|.+....+.. +..+++|++|++++|.+++..+ ..+. .+++|
T Consensus 96 ----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--------~~~~---~l~~L 155 (285)
T 1ozn_A 96 ----VDPATFHGLGRLHTLHLDRCGLQELGPGL-----FRGLAALQYLYLQDNALQALPD--------DTFR---DLGNL 155 (285)
T ss_dssp ----CCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------TTTT---TCTTC
T ss_pred ----cCHHHhcCCcCCCEEECCCCcCCEECHhH-----hhCCcCCCEEECCCCcccccCH--------hHhc---cCCCc
Confidence 12345666778888888888877644432 2446788888888888775322 2222 55778
Q ss_pred cEEEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHH
Q 012515 356 RLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 434 (462)
Q Consensus 356 ~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 434 (462)
++|+|++|+++. ++. .+..+++|++|++++|.+++. .+ ..+..+++|+.|++++|+++.. ..
T Consensus 156 ~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~~L~~L~l~~n~l~~~----~~ 218 (285)
T 1ozn_A 156 THLFLHGNRISS-----VPERAFRGLHSLDRLLLHQNRVAHV-----HP---HAFRDLGRLMTLYLFANNLSAL----PT 218 (285)
T ss_dssp CEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEE-----CT---TTTTTCTTCCEEECCSSCCSCC----CH
T ss_pred cEEECCCCcccc-----cCHHHhcCccccCEEECCCCccccc-----CH---hHccCcccccEeeCCCCcCCcC----CH
Confidence 888888888875 333 467778888888888887762 22 4566677888888888888774 23
Q ss_pred HHHhcCCCCCcEEEccCCCCCC
Q 012515 435 DTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 435 ~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
+.+.. .++|++|++++|++..
T Consensus 219 ~~~~~-l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 219 EALAP-LRALQYLRLNDNPWVC 239 (285)
T ss_dssp HHHTT-CTTCCEEECCSSCEEC
T ss_pred HHccc-CcccCEEeccCCCccC
Confidence 44555 3558888888887754
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.7e-20 Score=178.51 Aligned_cols=231 Identities=19% Similarity=0.198 Sum_probs=174.0
Q ss_pred cccceeeeccccchHhhhh-hhcCCCcCEEEeccCCChHH---HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHH
Q 012515 174 HYARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEH---VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL 249 (462)
Q Consensus 174 ~~~~~l~l~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~---~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l 249 (462)
..++.+++.++....++.. +.++++|++|++++|.+... ... ...+++|++|++++|.+...
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~~~L~~L~Ls~n~i~~l--------- 93 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-----DFGTTSLKYLDLSFNGVITM--------- 93 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-----HHSCSCCCEEECCSCSEEEE---------
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-----cccccccCEEECCCCccccC---------
Confidence 3567778888777766655 45889999999999986532 111 23579999999999987631
Q ss_pred hcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCC
Q 012515 250 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (462)
Q Consensus 250 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 329 (462)
......+.+|++|++++|.+..... ...+..+++|++|++++|.+....+.. +..+++|++|++++|.
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRVAFNGI-----FNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTT-------TTTTTTCTTCCEEECTTSCCEECSTTT-----TTTCTTCCEEECTTCE
T ss_pred hhhcCCCCCCCEEECCCCccccccc-------chhhhhccCCCEEECCCCcCCccchhh-----cccCcCCCEEECCCCc
Confidence 1222337899999999998877221 145678899999999999987654443 3457899999999999
Q ss_pred CCC-cccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhh
Q 012515 330 IGG-WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 408 (462)
Q Consensus 330 l~~-~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~ 408 (462)
+++ ..+ . .+..+++|++|++++|++++. .+..+..+++|++|++++|.+++ ++. ..
T Consensus 162 l~~~~~~--------~---~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~ 218 (306)
T 2z66_A 162 FQENFLP--------D---IFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFFS------LDT--FP 218 (306)
T ss_dssp EGGGEEC--------S---CCTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCSB------CCS--GG
T ss_pred cccccch--------h---HHhhCcCCCEEECCCCCcCCc----CHHHhcCCCCCCEEECCCCccCc------cCh--hh
Confidence 875 222 2 233668999999999999972 35678889999999999999987 321 34
Q ss_pred cCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCc
Q 012515 409 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 409 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
+..+++|+.|++++|+++.. .+..+..+.++|++|++++|+++..
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBC----SSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ccCcccCCEeECCCCCCccc----CHHHHHhhhccCCEEEccCCCeecc
Confidence 67789999999999999885 3445555445799999999999754
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=4.3e-20 Score=177.65 Aligned_cols=64 Identities=23% Similarity=0.378 Sum_probs=32.7
Q ss_pred CCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012515 351 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
++++|+.|+|++|++++. .+..+..+++|++|++++|.++. +| ..+..+++|+.|++++|+|+.
T Consensus 214 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------lp---~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK------VP---GGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS------CC---TTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCCCEEECCCCcCcee----ChhhccCCCCCCEEECCCCcCcc------CC---hhhccCCCcCEEECCCCcCCc
Confidence 334555555555555541 12234555555555555555553 33 334445555555555555554
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=5.7e-20 Score=185.93 Aligned_cols=88 Identities=22% Similarity=0.147 Sum_probs=57.3
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012515 353 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 432 (462)
.+|++|++++|+++.. -...+..+++|+.|++++|.|+. ++. ..+..+++|+.|++++|+++..
T Consensus 224 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~--~~~~~l~~L~~L~L~~n~l~~~---- 287 (477)
T 2id5_A 224 LNLTSLSITHCNLTAV----PYLAVRHLVYLRFLNLSYNPIST------IEG--SMLHELLRLQEIQLVGGQLAVV---- 287 (477)
T ss_dssp CCCSEEEEESSCCCSC----CHHHHTTCTTCCEEECCSSCCCE------ECT--TSCTTCTTCCEEECCSSCCSEE----
T ss_pred ccccEEECcCCccccc----CHHHhcCccccCeeECCCCcCCc------cCh--hhccccccCCEEECCCCccceE----
Confidence 3677777777777752 12456777888888888888775 221 3456667777777777777664
Q ss_pred HHHHHhcCCCCCcEEEccCCCCCCc
Q 012515 433 LLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 433 l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
.+..+.. .++|++|++++|+|++.
T Consensus 288 ~~~~~~~-l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 288 EPYAFRG-LNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp CTTTBTT-CTTCCEEECCSSCCSCC
T ss_pred CHHHhcC-cccCCEEECCCCcCcee
Confidence 2334444 34577777777777653
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=1.4e-18 Score=168.22 Aligned_cols=217 Identities=19% Similarity=0.231 Sum_probs=115.2
Q ss_pred cceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccc
Q 012515 176 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 255 (462)
Q Consensus 176 ~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~ 255 (462)
++.+++.++.....+. +..+++|++|++++|........ ...+++|++|++++|.+..... +. .
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~------~~----~ 175 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKDVTP------IA----N 175 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-----GTTCTTCCEEECCSSCCCCCGG------GG----G
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-----hhhCCCCcEEEecCCCcCCchh------hc----c
Confidence 3444555444433322 44555556666555532222111 2345566666666665543322 11 1
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012515 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
+++|++|++++|.+... .. +..+++|++|++++|.+.+... ...+++|++|++++|.+++.
T Consensus 176 l~~L~~L~l~~n~l~~~---------~~-~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~-- 236 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDI---------SP-LASLTSLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKITDL-- 236 (347)
T ss_dssp CTTCSEEECTTSCCCCC---------GG-GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC--
T ss_pred CCCCCEEEccCCccccc---------cc-ccCCCccceeecccCCCCCCch-------hhcCCcCCEEEccCCccCCC--
Confidence 55666666666665541 11 4455666666666666555332 12346666666666666541
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCc
Q 012515 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 415 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 415 (462)
+. +. .+++|++|++++|.+++ + +.+..+++|++|++++|.+++ + ..+..+++|
T Consensus 237 -------~~-~~---~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~------~----~~~~~l~~L 289 (347)
T 4fmz_A 237 -------SP-LA---NLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISD------I----SVLNNLSQL 289 (347)
T ss_dssp -------GG-GT---TCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCC------C----GGGGGCTTC
T ss_pred -------cc-hh---cCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCC------C----hhhcCCCCC
Confidence 11 22 44666666666666665 1 345666666677776666665 3 223445666
Q ss_pred cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 416 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 416 ~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
+.|++++|+++.. .+..+.. .++|++|++++|++++..+
T Consensus 290 ~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 290 NSLFLNNNQLGNE----DMEVIGG-LTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SEEECCSSCCCGG----GHHHHHT-CTTCSEEECCSSSCCCCGG
T ss_pred CEEECcCCcCCCc----ChhHhhc-cccCCEEEccCCccccccC
Confidence 7777777766664 2334444 2446677777766665443
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=6e-21 Score=183.33 Aligned_cols=212 Identities=21% Similarity=0.240 Sum_probs=144.1
Q ss_pred CCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCc
Q 012515 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (462)
Q Consensus 196 ~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (462)
..++++|++++|.+...... ...+++|++|+|++|.++ ..+..+. .+.+|++|++++|.+..
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-----l~~l~~L~~L~L~~n~l~-~lp~~~~--------~l~~L~~L~Ls~n~l~~---- 141 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-----AFRLSHLQHMTIDAAGLM-ELPDTMQ--------QFAGLETLTLARNPLRA---- 141 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-----GGGGTTCSEEEEESSCCC-CCCSCGG--------GGTTCSEEEEESCCCCC----
T ss_pred ccceeEEEccCCCchhcChh-----hhhCCCCCEEECCCCCcc-chhHHHh--------ccCCCCEEECCCCcccc----
Confidence 46788888888876533222 234778888888888776 3222222 26778888888888765
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHH----HHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCC
Q 012515 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS----SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS 351 (462)
Q Consensus 276 ~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~----~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~ 351 (462)
++..+..+++|++|++++|.+.+..+..+.. ..+..+++|++|++++|.++. +| ..+. +
T Consensus 142 -----lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp--------~~l~---~ 204 (328)
T 4fcg_A 142 -----LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LP--------ASIA---N 204 (328)
T ss_dssp -----CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CC--------GGGG---G
T ss_pred -----CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-ch--------Hhhc---C
Confidence 4455777888888888887665544433210 001125788888888888773 23 4444 4
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHH
Q 012515 352 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS 431 (462)
Q Consensus 352 l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 431 (462)
+++|++|+|++|+++. +++.+..+++|++|++++|.+... +| ..+..+++|+.|++++|++...
T Consensus 205 l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~-----~p---~~~~~l~~L~~L~L~~n~~~~~--- 268 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN-----YP---PIFGGRAPLKRLILKDCSNLLT--- 268 (328)
T ss_dssp CTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB-----CC---CCTTCCCCCCEEECTTCTTCCB---
T ss_pred CCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh-----hH---HHhcCCCCCCEEECCCCCchhh---
Confidence 5788888888888885 666788888888888888776543 44 4566778888888888876664
Q ss_pred HHHHHHhcCCCCCcEEEccCCCCCCcccc
Q 012515 432 QLLDTLSTLRRPPTSLSIADNNLGRFCAN 460 (462)
Q Consensus 432 ~l~~~l~~l~~~L~~L~Ls~N~l~~~~~~ 460 (462)
++..+..+ ++|++|++++|++.+.+|.
T Consensus 269 -~p~~~~~l-~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 269 -LPLDIHRL-TQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp -CCTTGGGC-TTCCEEECTTCTTCCCCCG
T ss_pred -cchhhhcC-CCCCEEeCCCCCchhhccH
Confidence 55556663 5588888888888777764
No 23
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=3.5e-20 Score=176.82 Aligned_cols=220 Identities=17% Similarity=0.086 Sum_probs=157.4
Q ss_pred cCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCC
Q 012515 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (462)
Q Consensus 195 ~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (462)
++++|++|++++|.+.......+ +...+++|++|+|++|.++.. +..+.. +... ..++|++|++++|.+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~--~~~~L~~L~L~~N~l~~--- 163 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPL--LEATGPDLNILNLRNVSWATR-DAWLAE-LQQW--LKPGLKVLSIAQAHSLN--- 163 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCS--SSCCSCCCSEEEEESCBCSSS-SSHHHH-HHTT--CCTTCCEEEEESCSCCC---
T ss_pred CcCCccEEEccCCcccchhHHHH--HHhcCCCccEEEccCCCCcch-hHHHHH-HHHh--hcCCCcEEEeeCCCCcc---
Confidence 67899999999998764322100 025688999999999999866 443333 1110 03789999999999987
Q ss_pred chhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCC
Q 012515 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (462)
Q Consensus 275 ~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 354 (462)
.....+..+++|++|++++|++.+... .+.......+++|++|++++|.+++... ++..+. .++++
T Consensus 164 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~--~~l~~ 229 (312)
T 1wwl_A 164 -----FSCEQVRVFPALSTLDLSDNPELGERG-LISALCPLKFPTLQVLALRNAGMETPSG------VCSALA--AARVQ 229 (312)
T ss_dssp -----CCTTTCCCCSSCCEEECCSCTTCHHHH-HHHHSCTTSCTTCCEEECTTSCCCCHHH------HHHHHH--HTTCC
T ss_pred -----chHHHhccCCCCCEEECCCCCcCcchH-HHHHHHhccCCCCCEEECCCCcCcchHH------HHHHHH--hcCCC
Confidence 334567889999999999999876421 1111112567999999999999985211 222221 14579
Q ss_pred ccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHH
Q 012515 355 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 434 (462)
Q Consensus 355 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 434 (462)
|++|+|++|++++.. -...+..+++|++|++++|.|+. +| ..+. ++|+.|++++|+|++. +
T Consensus 230 L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~Ls~N~l~~------ip---~~~~--~~L~~L~Ls~N~l~~~-----p 290 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAA---GAPSCDWPSQLNSLNLSFTGLKQ------VP---KGLP--AKLSVLDLSYNRLDRN-----P 290 (312)
T ss_dssp CSEEECTTSCCCSSC---CCSCCCCCTTCCEEECTTSCCSS------CC---SSCC--SEEEEEECCSSCCCSC-----C
T ss_pred CCEEECCCCcCCccc---chhhhhhcCCCCEEECCCCccCh------hh---hhcc--CCceEEECCCCCCCCC-----h
Confidence 999999999999732 01345567899999999999985 55 3443 7999999999999983 3
Q ss_pred HHHhcCCCCCcEEEccCCCCCCcc
Q 012515 435 DTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 435 ~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
. +..+ ++|++|++++|+|++.+
T Consensus 291 ~-~~~l-~~L~~L~L~~N~l~~~~ 312 (312)
T 1wwl_A 291 S-PDEL-PQVGNLSLKGNPFLDSE 312 (312)
T ss_dssp C-TTTS-CEEEEEECTTCTTTCCC
T ss_pred h-HhhC-CCCCEEeccCCCCCCCC
Confidence 3 5553 55999999999998753
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=4.5e-20 Score=181.77 Aligned_cols=233 Identities=18% Similarity=0.085 Sum_probs=137.4
Q ss_pred ccceeeeccccchHhhh-hhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++....++. .+..+++|++|++++|.+....... +..+++|++|++++|.++......+.
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~------- 138 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFH------- 138 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTT-------
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhc-------
Confidence 45667777766655443 5667788888888888765443222 35678888888888877733222111
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 333 (462)
.+++|++|++++|.+.. .....+..+++|++|++++|.+...... .+++|++|++++|.+++.
T Consensus 139 -~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 139 -NTPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDLS--------LIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp -TCTTCCEEECCSSCCCB--------CCTTTTSSCTTCCEEECCSSCCSBCCGG--------GCTTCSEEECCSSCCSEE
T ss_pred -CCCCCcEEECCCCccCc--------cChhhccCCCCCCEEECCCCcCCccccc--------cccccceeeccccccccc
Confidence 26788888888888876 2334567788888888888888764322 234444444444443321
Q ss_pred ccccCcc----------------------------cH--HHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCC
Q 012515 334 LSKYDRS----------------------------GP--LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 383 (462)
Q Consensus 334 ~~~~~~~----------------------------~l--~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 383 (462)
......+ .+ ...+. .+++|++|++++|.+++. .+..+..+++|
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L 274 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNELEKI----MYHPFVKMQRL 274 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGG---GCTTCSEEECCSSCCCEE----ESGGGTTCSSC
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHc---CCCCccEEECCCCcCCCc----ChhHccccccC
Confidence 0000000 00 01122 345666666666666652 34456666677
Q ss_pred CEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCc
Q 012515 384 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 384 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
++|++++|.++. ++ .....+++|+.|++++|+++. ++..+..+ ++|++|++++|+|++.
T Consensus 275 ~~L~L~~n~l~~------~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l-~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 275 ERLYISNNRLVA------LN---LYGQPIPTLKVLDLSHNHLLH-----VERNQPQF-DRLENLYLDHNSIVTL 333 (390)
T ss_dssp CEEECCSSCCCE------EE---CSSSCCTTCCEEECCSSCCCC-----CGGGHHHH-TTCSEEECCSSCCCCC
T ss_pred CEEECCCCcCcc------cC---cccCCCCCCCEEECCCCccee-----cCcccccc-CcCCEEECCCCcccee
Confidence 777777776665 32 233455777777777777765 23333332 3477777777777653
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=3.6e-20 Score=185.40 Aligned_cols=227 Identities=18% Similarity=0.139 Sum_probs=169.3
Q ss_pred cccceeeeccccchHhh-hhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 012515 174 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (462)
Q Consensus 174 ~~~~~l~l~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~ 252 (462)
..++.+++.++.+..+. ..+.++++|++|+|++|.+....... +.++++|++|+|++|.++......+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~------- 132 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLNTLELFDNRLTTIPNGAF------- 132 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCCEEECCSSCCSSCCTTTS-------
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCCEEECCCCcCCeeCHhHh-------
Confidence 45677788877776654 45668899999999999865433222 4568999999999998875433222
Q ss_pred cccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCC-CChhhHHHHHHHHhhCCCCccEEEecCCCCC
Q 012515 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (462)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 331 (462)
..+.+|++|++++|.+.. .....+..+++|++|++++|. +.. ..... +..+++|++|++++|.++
T Consensus 133 -~~l~~L~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~----~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 133 -VYLSKLKELWLRNNPIES--------IPSYAFNRIPSLRRLDLGELKRLSY-ISEGA----FEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp -CSCSSCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECCCCTTCCE-ECTTT----TTTCSSCCEEECTTSCCS
T ss_pred -hccccCceeeCCCCcccc--------cCHHHhhhCcccCEeCCCCCCCcce-eCcch----hhcccccCeecCCCCcCc
Confidence 227899999999999876 233456788999999999854 443 22211 355789999999999988
Q ss_pred CcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCC
Q 012515 332 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 411 (462)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~ 411 (462)
.. ..+..+.+|+.|+|++|+|++. .+..+..+++|+.|++++|.|++ ++. ..+..
T Consensus 199 ~~-------------~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~--~~~~~ 253 (440)
T 3zyj_A 199 EI-------------PNLTPLIKLDELDLSGNHLSAI----RPGSFQGLMHLQKLWMIQSQIQV------IER--NAFDN 253 (440)
T ss_dssp SC-------------CCCTTCSSCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTCCCCE------ECT--TSSTT
T ss_pred cc-------------cccCCCcccCEEECCCCccCcc----ChhhhccCccCCEEECCCCceeE------ECh--hhhcC
Confidence 41 1234668999999999999972 35678899999999999999987 321 56778
Q ss_pred CCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 412 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 412 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
+++|+.|+|++|+|+.. ..+.+.. .++|+.|+|++|++.
T Consensus 254 l~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLL----PHDLFTP-LHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECTTSCCCCC----CTTTTSS-CTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCcc----ChhHhcc-ccCCCEEEcCCCCcc
Confidence 89999999999999874 2233455 356999999999873
No 26
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=1.7e-18 Score=166.85 Aligned_cols=211 Identities=20% Similarity=0.248 Sum_probs=162.6
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCch
Q 012515 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (462)
.+++.|++++|.+...... ...+++|++|++++|.+++......... +++|++|++++|.+.+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~-------~~~L~~L~L~~~~l~~----- 132 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQ-------CSKLQNLSLEGLRLSD----- 132 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTT-------BCCCSEEECTTCBCCH-----
T ss_pred ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhh-------CCCCCEEeCcCcccCH-----
Confidence 6789999998876544332 2357899999999999887644443222 7899999999999876
Q ss_pred hHHHHHHhhcCCCCCCEEecCCC-CCChhhHHHHHHHHhhCCCCccEEEecCC-CCCCcccccCcccHHHhhhCCCCCC-
Q 012515 277 VVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQ- 353 (462)
Q Consensus 277 ~~~~l~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~~l~- 353 (462)
.....+..+++|++|++++| .+++.+...+.. .+++|++|++++| .+++. .++..+. .++
T Consensus 133 ---~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~----~~~~L~~L~l~~~~~l~~~-------~~~~~~~---~l~~ 195 (336)
T 2ast_B 133 ---PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS----SCSRLDELNLSWCFDFTEK-------HVQVAVA---HVSE 195 (336)
T ss_dssp ---HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH----HCTTCCEEECCCCTTCCHH-------HHHHHHH---HSCT
T ss_pred ---HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh----cCCCCCEEcCCCCCCcChH-------HHHHHHH---hccc
Confidence 67778888999999999999 798866655433 3689999999999 88742 1234455 457
Q ss_pred CccEEEccCC--CCCcchHHHHHHHhhcCCCCCEEeCCCCC-CCchhHHhHHHHHHhhcCCCCCccEEEccCC-CCChhh
Q 012515 354 SLRLLNLRGN--NLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENC-ELSGRG 429 (462)
Q Consensus 354 ~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n-~l~~~~ 429 (462)
+|++|++++| .+++. .++..+.++++|++|++++|. +++.+.. .+..+++|+.|++++| .+++.+
T Consensus 196 ~L~~L~l~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKS---DLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--------EFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp TCCEEECCSCGGGSCHH---HHHHHHHHCTTCSEEECTTCTTCCGGGGG--------GGGGCTTCCEEECTTCTTCCGGG
T ss_pred CCCEEEeCCCcccCCHH---HHHHHHhhCCCCCEEeCCCCCcCCHHHHH--------HHhCCCCCCEeeCCCCCCCCHHH
Confidence 9999999999 67754 466778889999999999999 8876433 3455699999999999 577764
Q ss_pred HHHHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012515 430 VSQLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 430 ~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
. ..+.. .++|++|++++| +++++
T Consensus 265 ~----~~l~~-~~~L~~L~l~~~-i~~~~ 287 (336)
T 2ast_B 265 L----LELGE-IPTLKTLQVFGI-VPDGT 287 (336)
T ss_dssp G----GGGGG-CTTCCEEECTTS-SCTTC
T ss_pred H----HHHhc-CCCCCEEeccCc-cCHHH
Confidence 4 34555 466999999999 77654
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=2.7e-20 Score=177.10 Aligned_cols=211 Identities=18% Similarity=0.150 Sum_probs=161.8
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhH--HHHHHHHHhcccccCCCccEEecCCCCCCCCCC
Q 012515 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~--~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (462)
+++++|++++|.+....... +.++++|++|++++|.++..+ +..+.. +.+|++|++++|.+..
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------~~~L~~L~Ls~n~i~~--- 92 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFG--------TTSLKYLDLSFNGVIT--- 92 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCEEEEEEHHHHS--------CSCCCEEECCSCSEEE---
T ss_pred CCCCEEECCCCccCccCHhH----hhccccCCEEECCCCccCcccCccccccc--------ccccCEEECCCCcccc---
Confidence 57999999999876433322 457899999999999998543 223322 7899999999999875
Q ss_pred chhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCC
Q 012515 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (462)
Q Consensus 275 ~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 354 (462)
+...+..+++|++|++++|.+.+...... +..+++|++|++++|.+++..+ ..+. ++++
T Consensus 93 ------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--------~~~~---~l~~ 151 (306)
T 2z66_A 93 ------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV----FLSLRNLIYLDISHTHTRVAFN--------GIFN---GLSS 151 (306)
T ss_dssp ------EEEEEETCTTCCEEECTTSEEESSTTTTT----TTTCTTCCEEECTTSCCEECST--------TTTT---TCTT
T ss_pred ------ChhhcCCCCCCCEEECCCCcccccccchh----hhhccCCCEEECCCCcCCccch--------hhcc---cCcC
Confidence 44457788999999999998876433111 3557899999999999885433 3333 6689
Q ss_pred ccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHH
Q 012515 355 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 434 (462)
Q Consensus 355 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 434 (462)
|++|++++|.+++. .++..+..+++|++|++++|.+++. .+ ..+..+++|+.|++++|+++... .
T Consensus 152 L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l~~L~~L~L~~N~l~~~~----~ 216 (306)
T 2z66_A 152 LEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL-----SP---TAFNSLSSLQVLNMSHNNFFSLD----T 216 (306)
T ss_dssp CCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTCTTCCEEECTTSCCSBCC----S
T ss_pred CCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCc-----CH---HHhcCCCCCCEEECCCCccCccC----h
Confidence 99999999998752 1456788899999999999999872 23 56777899999999999998742 2
Q ss_pred HHHhcCCCCCcEEEccCCCCCCccc
Q 012515 435 DTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 435 ~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
..+.. .++|++|++++|+|++.++
T Consensus 217 ~~~~~-l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 217 FPYKC-LNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp GGGTT-CTTCCEEECTTSCCCBCSS
T ss_pred hhccC-cccCCEeECCCCCCcccCH
Confidence 23555 4569999999999988765
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=5.3e-20 Score=184.85 Aligned_cols=228 Identities=18% Similarity=0.119 Sum_probs=169.5
Q ss_pred ccccceeeeccccchHh-hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhc
Q 012515 173 GHYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 251 (462)
Q Consensus 173 ~~~~~~l~l~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~ 251 (462)
...++.+++.++.+..+ +..+.++++|++|+|++|.+....... +.++++|++|+|++|.++......+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~------ 143 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLNTLELFDNWLTVIPSGAF------ 143 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSBCCTTTS------
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCCEEECCCCcCCccChhhh------
Confidence 34667888888877665 345678899999999999876543222 4568899999999998875433322
Q ss_pred ccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCC-CCChhhHHHHHHHHhhCCCCccEEEecCCCC
Q 012515 252 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSI 330 (462)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 330 (462)
..+.+|++|++++|.+.. .....+..+++|++|++++| .+.. ..... +..+++|++|++++|.+
T Consensus 144 --~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~----~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 144 --EYLSKLRELWLRNNPIES--------IPSYAFNRVPSLMRLDLGELKKLEY-ISEGA----FEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp --SSCTTCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECCCCTTCCE-ECTTT----TTTCTTCCEEECTTSCC
T ss_pred --cccCCCCEEECCCCCcce--------eCHhHHhcCCcccEEeCCCCCCccc-cChhh----ccCCCCCCEEECCCCcc
Confidence 127889999999999876 23345678899999999985 4443 22211 34578999999999998
Q ss_pred CCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcC
Q 012515 331 GGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 410 (462)
Q Consensus 331 ~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~ 410 (462)
++. ..+..+.+|+.|+|++|++++ ..+..+..+++|+.|++++|.|+.. .+ ..+.
T Consensus 209 ~~~-------------~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~-----~~---~~~~ 263 (452)
T 3zyi_A 209 KDM-------------PNLTPLVGLEELEMSGNHFPE----IRPGSFHGLSSLKKLWVMNSQVSLI-----ER---NAFD 263 (452)
T ss_dssp SSC-------------CCCTTCTTCCEEECTTSCCSE----ECGGGGTTCTTCCEEECTTSCCCEE-----CT---TTTT
T ss_pred ccc-------------ccccccccccEEECcCCcCcc----cCcccccCccCCCEEEeCCCcCceE-----CH---HHhc
Confidence 852 123466899999999999997 2466788999999999999999872 22 5577
Q ss_pred CCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 411 RCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 411 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
.+++|+.|+|++|+|+.. ....+.. .++|++|++++|++.
T Consensus 264 ~l~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSL----PHDLFTP-LRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCCSCC----CTTSSTT-CTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCcCCcc----ChHHhcc-ccCCCEEEccCCCcC
Confidence 789999999999999873 2233444 356999999999864
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=7.7e-20 Score=190.07 Aligned_cols=233 Identities=18% Similarity=0.085 Sum_probs=146.4
Q ss_pred ccceeeeccccchHhhh-hhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+.+.++.+..++. .+..+++|++|+|++|.+....... +.++++|++|+|++|.++......+.
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~------- 144 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFH------- 144 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTT-------
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhc-------
Confidence 45677777776665443 5667888888888888765543322 35678888888888887743322221
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 333 (462)
.+++|++|++++|.+.. ..+..+..+++|++|++++|.+....+. .+++|++|++++|.+++.
T Consensus 145 -~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 145 -NTPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDLS--------LIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp -TCTTCCEEECCSSCCCB--------CCTTTTTTCTTCCEEECTTSCCSBCCGG--------GCTTCSEEECCSSCCSEE
T ss_pred -cCCCCCEEEeeCCcCCC--------CChhhhhcCCcCcEEECcCCCCCCcChh--------hhhhhhhhhcccCccccc
Confidence 26788899998888876 3344567788899999999888774322 234444444444433321
Q ss_pred ccccC----------------------------cccH--HHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCC
Q 012515 334 LSKYD----------------------------RSGP--LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 383 (462)
Q Consensus 334 ~~~~~----------------------------~~~l--~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 383 (462)
..... ...+ ...+. .+++|+.|+|++|.+++ ..+..+..+++|
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L 280 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNELEK----IMYHPFVKMQRL 280 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG---GCTTCSEEECCSSCCCE----EESGGGTTCSSC
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc---cCCCCCEEECCCCccCC----CCHHHhcCccCC
Confidence 00000 0000 01122 45677777777777776 245567777788
Q ss_pred CEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCc
Q 012515 384 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 384 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
+.|+|++|.++. ++ .....+++|+.|+|++|+++. ++..+..+ ++|++|++++|.|++.
T Consensus 281 ~~L~Ls~N~l~~------l~---~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l-~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 281 ERLYISNNRLVA------LN---LYGQPIPTLKVLDLSHNHLLH-----VERNQPQF-DRLENLYLDHNSIVTL 339 (597)
T ss_dssp CEEECTTSCCCE------EE---CSSSCCTTCCEEECCSSCCCC-----CGGGHHHH-TTCSEEECCSSCCCCC
T ss_pred CEEECCCCCCCC------CC---cccccCCCCcEEECCCCCCCc-----cCcccccC-CCCCEEECCCCCCCCc
Confidence 888888887775 33 344556788888888888775 33344442 3488888888877653
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=6.3e-21 Score=182.05 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=164.5
Q ss_pred CCcCEEEeccCCChH--HHHHHHHHHHhcCCCccEEEccC-CCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCC
Q 012515 197 SKLQSLVLRWIRFEE--HVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 273 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~--~~~~l~~~l~~~~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 273 (462)
.++++|++++|.+.. ..... +..+++|++|++++ |.+....+..+.. +.+|++|++++|.+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~----l~~l~~L~~L~L~~~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~-- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAK--------LTQLHYLYITHTNVSG-- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG----GGGCTTCSEEEEEEETTEESCCCGGGGG--------CTTCSEEEEEEECCEE--
T ss_pred ceEEEEECCCCCccCCcccChh----HhCCCCCCeeeCCCCCcccccCChhHhc--------CCCCCEEECcCCeeCC--
Confidence 568999999998764 22221 45689999999995 8776554444432 7999999999999985
Q ss_pred CchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCC
Q 012515 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 353 (462)
Q Consensus 274 ~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~ 353 (462)
.++..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..| ..+..+. .
T Consensus 116 ------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~--~ 174 (313)
T 1ogq_A 116 ------AIPDFLSQIKTLVTLDFSYNALSGTLPPSI-----SSLPNLVGITFDGNRISGAIP--------DSYGSFS--K 174 (313)
T ss_dssp ------ECCGGGGGCTTCCEEECCSSEEESCCCGGG-----GGCTTCCEEECCSSCCEEECC--------GGGGCCC--T
T ss_pred ------cCCHHHhCCCCCCEEeCCCCccCCcCChHH-----hcCCCCCeEECcCCcccCcCC--------HHHhhhh--h
Confidence 456678889999999999999886555544 447999999999999987655 5566332 3
Q ss_pred CccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH
Q 012515 354 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 433 (462)
Q Consensus 354 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 433 (462)
.|+.|++++|+++. .++..+..++ |+.|++++|.+++. .+ ..+..+++|+.|++++|+++..
T Consensus 175 ~L~~L~L~~N~l~~----~~~~~~~~l~-L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~L~~N~l~~~----- 236 (313)
T 1ogq_A 175 LFTSMTISRNRLTG----KIPPTFANLN-LAFVDLSRNMLEGD-----AS---VLFGSDKNTQKIHLAKNSLAFD----- 236 (313)
T ss_dssp TCCEEECCSSEEEE----ECCGGGGGCC-CSEEECCSSEEEEC-----CG---GGCCTTSCCSEEECCSSEECCB-----
T ss_pred cCcEEECcCCeeec----cCChHHhCCc-ccEEECcCCcccCc-----CC---HHHhcCCCCCEEECCCCceeee-----
Confidence 89999999999986 3667788776 99999999998763 33 5678889999999999999863
Q ss_pred HHHHhcCCCCCcEEEccCCCCCCcccc
Q 012515 434 LDTLSTLRRPPTSLSIADNNLGRFCAN 460 (462)
Q Consensus 434 ~~~l~~l~~~L~~L~Ls~N~l~~~~~~ 460 (462)
...+.. .++|++|++++|+|++.+|.
T Consensus 237 ~~~~~~-l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 237 LGKVGL-SKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp GGGCCC-CTTCCEEECCSSCCEECCCG
T ss_pred cCcccc-cCCCCEEECcCCcccCcCCh
Confidence 223455 46699999999999877664
No 31
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=5.2e-20 Score=175.44 Aligned_cols=217 Identities=16% Similarity=0.059 Sum_probs=152.5
Q ss_pred cCCCcCEEEeccCCChHHHHHHHHHHH-hcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCC
Q 012515 195 RESKLQSLVLRWIRFEEHVQALCKLLI-QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 273 (462)
Q Consensus 195 ~~~~L~~L~L~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 273 (462)
..++|++|++++|.+....... +. ..+++|++|+|++|.++......-...+. .+++|++|++++|.+..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~----~~~~L~~L~Ls~n~l~~-- 159 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPL---PLEATGLALSSLRLRNVSWATGRSWLAELQQW----LKPGLKVLSIAQAHSPA-- 159 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCC---SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT----BCSCCCEEEEECCSSCC--
T ss_pred ccCceeEEEeeCCEeccchhhh---hhhccCCCCCEEEeecccccchhhhhHHHHhh----hccCCCEEEeeCCCcch--
Confidence 4567999999999865433211 01 56789999999999988633211111111 27899999999999877
Q ss_pred CchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHh-hhCCCCC
Q 012515 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS-LGAGKSL 352 (462)
Q Consensus 274 ~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~-l~~~~~l 352 (462)
.....+..+++|++|+|++|++........ ......+++|++|++++|.++.... .+.. +. ++
T Consensus 160 ------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~------~~~~l~~---~l 223 (310)
T 4glp_A 160 ------FSCEQVRAFPALTSLDLSDNPGLGERGLMA-ALCPHKFPAIQNLALRNTGMETPTG------VCAALAA---AG 223 (310)
T ss_dssp ------CCTTSCCCCTTCCEEECCSCTTCHHHHHHT-TSCTTSSCCCCSCBCCSSCCCCHHH------HHHHHHH---HT
T ss_pred ------hhHHHhccCCCCCEEECCCCCCccchhhhH-HHhhhcCCCCCEEECCCCCCCchHH------HHHHHHh---cC
Confidence 344567788999999999999765322111 0012457889999999999974111 1122 23 45
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcC---CCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhh
Q 012515 353 QSLRLLNLRGNNLCKADARDLGSALVHI---PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 429 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~---~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 429 (462)
++|++|+|++|++++. .++.+..+ ++|++|++++|.|+. +| ..+. ++|+.|++++|+|++.
T Consensus 224 ~~L~~L~Ls~N~l~~~----~p~~~~~~~~~~~L~~L~Ls~N~l~~------lp---~~~~--~~L~~L~Ls~N~l~~~- 287 (310)
T 4glp_A 224 VQPHSLDLSHNSLRAT----VNPSAPRCMWSSALNSLNLSFAGLEQ------VP---KGLP--AKLRVLDLSSNRLNRA- 287 (310)
T ss_dssp CCCSSEECTTSCCCCC----CCSCCSSCCCCTTCCCEECCSSCCCS------CC---SCCC--SCCSCEECCSCCCCSC-
T ss_pred CCCCEEECCCCCCCcc----chhhHHhccCcCcCCEEECCCCCCCc------hh---hhhc--CCCCEEECCCCcCCCC-
Confidence 7899999999999972 35555665 699999999999985 55 3333 7999999999999872
Q ss_pred HHHHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012515 430 VSQLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 430 ~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
+. +.. .++|+.|++++|+|++++
T Consensus 288 ----~~-~~~-l~~L~~L~L~~N~l~~~g 310 (310)
T 4glp_A 288 ----PQ-PDE-LPEVDNLTLDGNPFLVPG 310 (310)
T ss_dssp ----CC-TTS-CCCCSCEECSSTTTSCCC
T ss_pred ----ch-hhh-CCCccEEECcCCCCCCCC
Confidence 11 344 356999999999998864
No 32
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=2.4e-17 Score=171.09 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=174.1
Q ss_pred eeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCC
Q 012515 179 LRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHK 258 (462)
Q Consensus 179 l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~ 258 (462)
+.+.+......+..+..+++|++|++++|.+..... ..+...+++|++|+++ +.+.+.+...+... +++
T Consensus 275 L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~---~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~-------~~~ 343 (592)
T 3ogk_B 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH---CTLIQKCPNLEVLETR-NVIGDRGLEVLAQY-------CKQ 343 (592)
T ss_dssp EEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH---HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHH-------CTT
T ss_pred cCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH---HHHHHhCcCCCEEecc-CccCHHHHHHHHHh-------CCC
Confidence 344443333445556678899999999998544321 2235679999999999 66666666666543 788
Q ss_pred ccEEecCC-----------CCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEec-
Q 012515 259 IENLSIDI-----------SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS- 326 (462)
Q Consensus 259 L~~L~l~~-----------~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls- 326 (462)
|++|++++ +.++. ..+......+++|++|+++.|.+++.++..+.. .+++|++|+++
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~-------~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~----~~~~L~~L~l~~ 412 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQ-------RGLIALAQGCQELEYMAVYVSDITNESLESIGT----YLKNLCDFRLVL 412 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCH-------HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH----HCCSCCEEEEEE
T ss_pred CCEEEeecCccccccccccCccCH-------HHHHHHHhhCccCeEEEeecCCccHHHHHHHHh----hCCCCcEEEEee
Confidence 99999993 45554 345555667899999999999999988888754 35899999997
Q ss_pred ---CCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCC--CCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhH
Q 012515 327 ---GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN--LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSL 401 (462)
Q Consensus 327 ---~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l 401 (462)
.|.+++. ...+.+...+. ++++|+.|+++.|. +++.++..+ ...+++|+.|++++|.+++.|+..+
T Consensus 413 ~~~~n~l~~~---p~~~~~~~~~~---~~~~L~~L~L~~~~~~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~ 483 (592)
T 3ogk_B 413 LDREERITDL---PLDNGVRSLLI---GCKKLRRFAFYLRQGGLTDLGLSYI---GQYSPNVRWMLLGYVGESDEGLMEF 483 (592)
T ss_dssp CSCCSCCSSC---CCHHHHHHHHH---HCTTCCEEEEECCGGGCCHHHHHHH---HHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred cCCCccccCc---hHHHHHHHHHH---hCCCCCEEEEecCCCCccHHHHHHH---HHhCccceEeeccCCCCCHHHHHHH
Confidence 5566641 01112334444 46899999998764 888665444 3458899999999999998775554
Q ss_pred HHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 402 IPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 402 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
+ ..+++|++|++++|.+++.++..+...+ ++|++|++++|++++.+.
T Consensus 484 ~-------~~~~~L~~L~l~~n~l~~~~~~~~~~~l----~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 484 S-------RGCPNLQKLEMRGCCFSERAIAAAVTKL----PSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp H-------TCCTTCCEEEEESCCCBHHHHHHHHHHC----SSCCEEEEESCBCCTTCT
T ss_pred H-------hcCcccCeeeccCCCCcHHHHHHHHHhc----CccCeeECcCCcCCHHHH
Confidence 3 4568999999999999887766655443 449999999999998753
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=3.1e-18 Score=165.76 Aligned_cols=229 Identities=16% Similarity=0.217 Sum_probs=173.5
Q ss_pred ccccccceeecccc--------cccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEE
Q 012515 160 CDYSKLSYHCQQFG--------HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLE 231 (462)
Q Consensus 160 ~~l~~L~l~~~~~~--------~~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~ 231 (462)
.+++.+.++...+. ..++.+++.++.....+..+..+++|++|++++|.+..... ...+++|++|+
T Consensus 110 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L~ 183 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------IANLTDLYSLS 183 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEE
T ss_pred CcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh------hccCCCCCEEE
Confidence 45566655544221 14567777777555555668889999999999998654432 35689999999
Q ss_pred ccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHH
Q 012515 232 FLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS 311 (462)
Q Consensus 232 L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 311 (462)
+++|.+.+... + . .+.+|+.|++++|.+... .. +..+++|++|++++|.+.+...
T Consensus 184 l~~n~l~~~~~--~----~----~l~~L~~L~l~~n~l~~~---------~~-~~~~~~L~~L~l~~n~l~~~~~----- 238 (347)
T 4fmz_A 184 LNYNQIEDISP--L----A----SLTSLHYFTAYVNQITDI---------TP-VANMTRLNSLKIGNNKITDLSP----- 238 (347)
T ss_dssp CTTSCCCCCGG--G----G----GCTTCCEEECCSSCCCCC---------GG-GGGCTTCCEEECCSSCCCCCGG-----
T ss_pred ccCCccccccc--c----c----CCCccceeecccCCCCCC---------ch-hhcCCcCCEEEccCCccCCCcc-----
Confidence 99999875433 1 1 278999999999998872 11 6788999999999999987543
Q ss_pred HHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCC
Q 012515 312 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 391 (462)
Q Consensus 312 ~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 391 (462)
...+++|++|++++|.+++. ..+. .+++|+.|++++|++++ + +.+..+++|+.|++++|
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~----------~~~~---~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI----------NAVK---DLTKLKMLNVGSNQISD-----I-SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC----------GGGT---TCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSS
T ss_pred --hhcCCCCCEEECCCCccCCC----------hhHh---cCCCcCEEEccCCccCC-----C-hhhcCCCCCCEEECcCC
Confidence 24579999999999999851 2233 66899999999999997 3 46889999999999999
Q ss_pred CCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 392 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 392 ~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
.+++.+. ..+..+++|+.|++++|++++. .. +.. .++|++|++++|.|+
T Consensus 298 ~l~~~~~--------~~l~~l~~L~~L~L~~n~l~~~-----~~-~~~-l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 QLGNEDM--------EVIGGLTNLTTLFLSQNHITDI-----RP-LAS-LSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGGH--------HHHHTCTTCSEEECCSSSCCCC-----GG-GGG-CTTCSEESSSCC---
T ss_pred cCCCcCh--------hHhhccccCCEEEccCCccccc-----cC-hhh-hhccceeehhhhccc
Confidence 9987532 3455679999999999999984 22 566 456999999999986
No 34
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.76 E-value=7.9e-18 Score=147.52 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=88.0
Q ss_pred HHHHHhhcCCCCCCEEecCCC-CCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccE
Q 012515 279 VELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (462)
Q Consensus 279 ~~l~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~ 357 (462)
+.+...+..+++|++|+|++| .+++.+...++.++.. .++|++|+|++|.+++ .+...++..+. ..++|++
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~----~g~~~l~~~L~---~n~~L~~ 97 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSND----PVAFALAEMLK---VNNTLKS 97 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCH----HHHHHHHHHHH---HCSSCCE
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCCh----HHHHHHHHHHH---hCCCcCE
Confidence 467777888888889999888 8888888888877644 3566666666666652 33344444444 2245666
Q ss_pred EEccCCCCCcchHHHHHHHhhcCCCCCEEeC--CCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhh
Q 012515 358 LNLRGNNLCKADARDLGSALVHIPNLEILDI--SDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 429 (462)
Q Consensus 358 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L--s~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 429 (462)
|+|++|.|++.|+..++.++..+++|++|+| ++|.|+++|+..+.. .+..+++|++|+|++|.++..|
T Consensus 98 L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~----~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN----MLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH----HHHHCSSCCEEECCCSSHHHHH
T ss_pred EECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH----HHHhCCCcCEEeccCCCCChHH
Confidence 6666666666666666666666666666666 556666666555553 3334455666666666665554
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=7.9e-20 Score=179.99 Aligned_cols=229 Identities=21% Similarity=0.218 Sum_probs=164.0
Q ss_pred ccceeeeccccchHhhh-hhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++.....+. .+.++++|++|++++|.+....... +..+++|++|++++|.++...+..+.
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~------- 162 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQ------- 162 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTS-------
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH----hcCCCCCcEEECCCCccCccChhhcc-------
Confidence 56788888887776554 4668899999999999876443322 35689999999999998764443332
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHH---------hh---------------------cCCCCCCEEecCCCCCCh
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVS---------FL---------------------SSGRSLCSLKLRHCHLDR 303 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~---------~l---------------------~~l~~L~~L~Ls~n~l~~ 303 (462)
.+++|++|++++|.+.......++. +.. .+ ...++|++|++++|.+.+
T Consensus 163 -~l~~L~~L~l~~n~l~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 163 -ATTSLQNLQLSSNRLTHVDLSLIPS-LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 240 (390)
T ss_dssp -SCTTCCEEECCSSCCSBCCGGGCTT-CSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC
T ss_pred -CCCCCCEEECCCCcCCccccccccc-cceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc
Confidence 2789999999999998743221100 000 00 001256666677776665
Q ss_pred hhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCC
Q 012515 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 383 (462)
Q Consensus 304 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 383 (462)
. .. ...+++|++|++++|.+++..+ ..+. ++++|++|+|++|+++. ++..+..+++|
T Consensus 241 ~--~~-----l~~l~~L~~L~Ls~n~l~~~~~--------~~~~---~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L 297 (390)
T 3o6n_A 241 T--AW-----LLNYPGLVEVDLSYNELEKIMY--------HPFV---KMQRLERLYISNNRLVA-----LNLYGQPIPTL 297 (390)
T ss_dssp C--GG-----GGGCTTCSEEECCSSCCCEEES--------GGGT---TCSSCCEEECCSSCCCE-----EECSSSCCTTC
T ss_pred c--HH-----HcCCCCccEEECCCCcCCCcCh--------hHcc---ccccCCEEECCCCcCcc-----cCcccCCCCCC
Confidence 3 11 3456889999999999886444 4444 66899999999999996 55556778999
Q ss_pred CEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012515 384 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 384 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
++|++++|.++. +| ..+..+++|+.|++++|+++... +.. .++|++|++++|++..
T Consensus 298 ~~L~L~~n~l~~------~~---~~~~~l~~L~~L~L~~N~i~~~~-------~~~-~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 298 KVLDLSHNHLLH------VE---RNQPQFDRLENLYLDHNSIVTLK-------LST-HHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CEEECCSSCCCC------CG---GGHHHHTTCSEEECCSSCCCCCC-------CCT-TCCCSEEECCSSCEEH
T ss_pred CEEECCCCccee------cC---ccccccCcCCEEECCCCccceeC-------chh-hccCCEEEcCCCCccc
Confidence 999999999986 33 23344589999999999998842 444 4569999999999864
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.75 E-value=1.4e-19 Score=188.53 Aligned_cols=94 Identities=24% Similarity=0.293 Sum_probs=53.9
Q ss_pred CCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhH
Q 012515 351 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 430 (462)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 430 (462)
++++|++|++++|.+++..+ ..+..+..+++|++|++++|.+++. .| ..+..+++|+.|++++|+++..
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l~~L~~L~Ls~N~l~~~-- 515 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFCDLSSI-----DQ---HAFTSLKMMNHVDLSHNRLTSS-- 515 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEE-CSSCGGGGCTTCCEEECTTSCCCEE-----CT---TTTTTCTTCCEEECCSSCCCGG--
T ss_pred CCCCCCEEECCCCCCCcccc-ccchhhccCCCccEEECCCCccCcc-----Ch---hhhccccCCCEEECCCCccCcC--
Confidence 44566666666666654110 0112355666666666666666652 12 4455667777777777777664
Q ss_pred HHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 431 SQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 431 ~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
.++.+..+ +.| +|++++|++++..+
T Consensus 516 --~~~~l~~l-~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 516 --SIEALSHL-KGI-YLNLASNHISIILP 540 (606)
T ss_dssp --GGGGGTTC-CSC-EEECCSSCCCCCCG
T ss_pred --ChhHhCcc-ccc-EEECcCCcccccCH
Confidence 34455553 446 77777777765543
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=3.8e-19 Score=179.91 Aligned_cols=232 Identities=17% Similarity=0.107 Sum_probs=140.3
Q ss_pred ccceeeeccccchHh-hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++....+ +..+.++++|++|+|++|.+....... +.++++|++|+|++|.+....+..+.
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~------- 125 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQ------- 125 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTT-------
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHcc-------
Confidence 345556665555443 344556666666666666654322211 23456667777776666543322221
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 333 (462)
.+.+|++|++++|.+.. .....+..+++|++|++++|.+.......+ ..+++|+.|++++|.+.+.
T Consensus 126 -~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 126 -DLYNLKSLEVGDNDLVY--------ISHRAFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp -TCTTCCEEEECCTTCCE--------ECTTSSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEE
T ss_pred -ccccCCEEECCCCccce--------eChhhccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEe
Confidence 15667777777766655 223345566677777777777665433322 3456777777777776642
Q ss_pred ccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCC
Q 012515 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 413 (462)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 413 (462)
.+ ..+..+++|+.|++++|.+.+ .+++......+|++|++++|.++. ++. ..+..++
T Consensus 192 ~~-----------~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~------~~~--~~~~~l~ 248 (477)
T 2id5_A 192 RD-----------YSFKRLYRLKVLEISHWPYLD----TMTPNCLYGLNLTSLSITHCNLTA------VPY--LAVRHLV 248 (477)
T ss_dssp CT-----------TCSCSCTTCCEEEEECCTTCC----EECTTTTTTCCCSEEEEESSCCCS------CCH--HHHTTCT
T ss_pred Ch-----------hhcccCcccceeeCCCCcccc----ccCcccccCccccEEECcCCcccc------cCH--HHhcCcc
Confidence 22 223355677777777776554 244444445578888888888876 332 3456778
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 414 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 414 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
+|+.|++++|+++... ...+.. .++|++|++++|++++..+
T Consensus 249 ~L~~L~Ls~n~l~~~~----~~~~~~-l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 249 YLRFLNLSYNPISTIE----GSMLHE-LLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp TCCEEECCSSCCCEEC----TTSCTT-CTTCCEEECCSSCCSEECT
T ss_pred ccCeeECCCCcCCccC----hhhccc-cccCCEEECCCCccceECH
Confidence 8999999999888742 233455 3559999999998877544
No 38
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=2.5e-19 Score=167.42 Aligned_cols=203 Identities=16% Similarity=0.112 Sum_probs=153.6
Q ss_pred hcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCC
Q 012515 194 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 273 (462)
Q Consensus 194 ~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 273 (462)
..+++|++|+++++.+..... ...+++|++|++++|.+++.. . +. .+++|++|++++|.+..
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~------l~~l~~L~~L~l~~n~l~~~~--~----l~----~l~~L~~L~L~~n~l~~-- 99 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG------IQYLPNVRYLALGGNKLHDIS--A----LK----ELTNLTYLILTGNQLQS-- 99 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT------GGGCTTCCEEECTTSCCCCCG--G----GT----TCTTCCEEECTTSCCCC--
T ss_pred ccccceeeeeeCCCCcccccc------cccCCCCcEEECCCCCCCCch--h----hc----CCCCCCEEECCCCccCc--
Confidence 345678999999887654321 346899999999999887531 1 22 27889999999999887
Q ss_pred CchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCC
Q 012515 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 353 (462)
Q Consensus 274 ~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~ 353 (462)
.....+..+++|++|++++|.+....+.. +..+++|++|++++|.+++..+ ..+ .+++
T Consensus 100 ------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~--------~~~---~~l~ 157 (272)
T 3rfs_A 100 ------LPNGVFDKLTNLKELVLVENQLQSLPDGV-----FDKLTNLTYLNLAHNQLQSLPK--------GVF---DKLT 157 (272)
T ss_dssp ------CCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------TTT---TTCT
T ss_pred ------cChhHhcCCcCCCEEECCCCcCCccCHHH-----hccCCCCCEEECCCCccCccCH--------HHh---ccCc
Confidence 33345677899999999999998644332 3457899999999999886433 223 3668
Q ss_pred CccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH
Q 012515 354 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 433 (462)
Q Consensus 354 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 433 (462)
+|+.|++++|++++. .+..+..+++|++|++++|.+++ ++. ..+..+++|+.|++++|+++..
T Consensus 158 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~~~----- 220 (272)
T 3rfs_A 158 NLTELDLSYNQLQSL----PEGVFDKLTQLKDLRLYQNQLKS------VPD--GVFDRLTSLQYIWLHDNPWDCT----- 220 (272)
T ss_dssp TCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCBCCC-----
T ss_pred cCCEEECCCCCcCcc----CHHHhcCCccCCEEECCCCcCCc------cCH--HHHhCCcCCCEEEccCCCcccc-----
Confidence 999999999999862 23456889999999999999886 332 4567789999999999998752
Q ss_pred HHHHhcCCCCCcEEEccCCCCCCcccc
Q 012515 434 LDTLSTLRRPPTSLSIADNNLGRFCAN 460 (462)
Q Consensus 434 ~~~l~~l~~~L~~L~Ls~N~l~~~~~~ 460 (462)
++.|+.|+++.|.+++.+|.
T Consensus 221 -------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 221 -------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp -------TTTTHHHHHHHHHTGGGBBC
T ss_pred -------CcHHHHHHHHHHhCCCcccC
Confidence 34588888999998888775
No 39
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.1e-18 Score=166.44 Aligned_cols=210 Identities=22% Similarity=0.156 Sum_probs=152.0
Q ss_pred ccceeeeccccch-Hhhhhh--hcCCCcCEEEeccCCChHHHHHHHHHH-HhcCCCccEEEccCCCCChhHHHHHHHHHh
Q 012515 175 YARCLRLQNALCV-EETCQL--LRESKLQSLVLRWIRFEEHVQALCKLL-IQNSETLASLEFLHCKLSPSFVEGICRSLC 250 (462)
Q Consensus 175 ~~~~l~l~~~~~~-~~~~~l--~~~~~L~~L~L~~~~~~~~~~~l~~~l-~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~ 250 (462)
.++.+++.++... ..+..+ ..+++|++|++++|.+......+ ..+ ...+++|++|++++|.++...+..+.
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~---- 170 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVR---- 170 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCC----
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhc----
Confidence 4455566665554 234444 57799999999999976542222 111 11238999999999998765444332
Q ss_pred cccccCCCccEEecCCCCCCCCCCchhHHHHHHhh--cCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCC
Q 012515 251 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL--SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 328 (462)
Q Consensus 251 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l--~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 328 (462)
.+++|++|++++|.+.. ...+...+ ..+++|++|++++|.++... .+...+...+++|++|++++|
T Consensus 171 ----~l~~L~~L~Ls~N~l~~------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 171 ----VFPALSTLDLSDNPELG------ERGLISALCPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp ----CCSSCCEEECCSCTTCH------HHHHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTS
T ss_pred ----cCCCCCEEECCCCCcCc------chHHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCC
Confidence 27899999999999765 01234444 78899999999999998421 233333556799999999999
Q ss_pred CCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhh
Q 012515 329 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 408 (462)
Q Consensus 329 ~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~ 408 (462)
.+++..+ ...+..+++|++|+|++|+|+. ++..+. ++|++|++++|.|++ +| .
T Consensus 239 ~l~~~~~----------~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~------~p---~- 291 (312)
T 1wwl_A 239 SLRDAAG----------APSCDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDR------NP---S- 291 (312)
T ss_dssp CCCSSCC----------CSCCCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCS------CC---C-
T ss_pred cCCcccc----------hhhhhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCC------Ch---h-
Confidence 9987432 1223356899999999999994 666555 899999999999997 44 3
Q ss_pred cCCCCCccEEEccCCCCChh
Q 012515 409 SERCNPLVELYLENCELSGR 428 (462)
Q Consensus 409 l~~~~~L~~L~L~~n~l~~~ 428 (462)
+..+++|+.|++++|++++.
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTTSCEEEEEECTTCTTTCC
T ss_pred HhhCCCCCEEeccCCCCCCC
Confidence 66779999999999999864
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.75 E-value=5.2e-19 Score=184.27 Aligned_cols=135 Identities=15% Similarity=0.084 Sum_probs=94.7
Q ss_pred ccceeeeccccchHh-hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++....+ +..+.++++|++|++++|.+....+.. +.++++|++|++++|.++...+..+.
T Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~l~~~~~~------- 126 (606)
T 3t6q_A 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLH------- 126 (606)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT----TSSCTTCCEEECTTSCCSCGGGSCCT-------
T ss_pred cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh----hcccccccEeeccccCcccCCcchhc-------
Confidence 456777777766554 455678888888888888765432221 35678888899888888764333322
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCcc--EEEecCCCCC
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS--ILDLSGNSIG 331 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~--~L~Ls~n~l~ 331 (462)
.+.+|++|++++|.+..... ..+..+++|++|++++|.+....+..+ ..+++|+ +|++++|.++
T Consensus 127 -~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 127 -NQKTLESLYLGSNHISSIKL--------PKGFPTEKLKVLDFQNNAIHYLSKEDM-----SSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp -TCTTCCEEECCSSCCCCCCC--------CTTCCCTTCCEEECCSSCCCEECHHHH-----HTTTTCCSEEEECTTCCCC
T ss_pred -cCCcccEEECCCCcccccCc--------ccccCCcccCEEEcccCcccccChhhh-----hhhcccceeEEecCCCccC
Confidence 27889999999998876321 122347899999999999987666554 3467788 8899999887
Q ss_pred Ccc
Q 012515 332 GWL 334 (462)
Q Consensus 332 ~~~ 334 (462)
+..
T Consensus 193 ~~~ 195 (606)
T 3t6q_A 193 GIE 195 (606)
T ss_dssp EEC
T ss_pred ccC
Confidence 543
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=9.7e-20 Score=175.34 Aligned_cols=241 Identities=17% Similarity=0.137 Sum_probs=123.2
Q ss_pred ccceeeeccccchHhh-hhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++....++ ..+.++++|++|++++|.+....... +..+++|++|++++|.++..... .
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~---------~ 121 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRKLQKLYISKNHLVEIPPN---------L 121 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTTCCEEECCSSCCCSCCSS---------C
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCCCCEEECCCCcCCccCcc---------c
Confidence 4556666666555443 34556777777777777655432111 34567777777777766521110 0
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 333 (462)
..+|++|++++|.+... ....+..+++|++|++++|.+...+... ..+..+ +|++|++++|.+++.
T Consensus 122 --~~~L~~L~l~~n~i~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 122 --PSSLVELRIHDNRIRKV--------PKGVFSGLRNMNCIEMGGNPLENSGFEP---GAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp --CTTCCEEECCSSCCCCC--------CSGGGSSCSSCCEEECCSCCCBGGGSCT---TSSCSC-CCSCCBCCSSBCSSC
T ss_pred --cccCCEEECCCCccCcc--------CHhHhCCCccCCEEECCCCccccCCCCc---ccccCC-ccCEEECcCCCCCcc
Confidence 24677777777776651 2234556677777777777665321110 001222 444555555444421
Q ss_pred cccc---------CcccHH-HhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHH
Q 012515 334 LSKY---------DRSGPL-FSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIP 403 (462)
Q Consensus 334 ~~~~---------~~~~l~-~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~ 403 (462)
.... +...+. .....+..+++|++|+|++|++++. .+..+..+++|++|++++|.++. +|
T Consensus 188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------lp 257 (332)
T 2ft3_A 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI----ENGSLSFLPTLRELHLDNNKLSR------VP 257 (332)
T ss_dssp CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC----CTTGGGGCTTCCEEECCSSCCCB------CC
T ss_pred CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC----ChhHhhCCCCCCEEECCCCcCee------cC
Confidence 0000 000000 0001222456666777777766651 22346666677777777776664 44
Q ss_pred HHHhhcCCCCCccEEEccCCCCChhhHHHHHHHH-hcCCCCCcEEEccCCCCC
Q 012515 404 YFVQASERCNPLVELYLENCELSGRGVSQLLDTL-STLRRPPTSLSIADNNLG 455 (462)
Q Consensus 404 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~l~~~L~~L~Ls~N~l~ 455 (462)
..+..+++|+.|++++|+|+..+...+.... ......|+.|++++|++.
T Consensus 258 ---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 258 ---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp ---TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ---hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 3455566777777777776664322211110 000233667777777665
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2e-19 Score=186.93 Aligned_cols=229 Identities=21% Similarity=0.226 Sum_probs=166.4
Q ss_pred ccceeeeccccchHhhhh-hhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++.+..++.. +.++++|++|+|++|.+......+ +..+++|++|+|++|.++...+..+..
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 169 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQA------ 169 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTT------
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH----hccCCCCCEEEeeCCcCCCCChhhhhc------
Confidence 567888888887776554 468899999999999876543322 457899999999999998655443332
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHH---------Hhhc---------------------CCCCCCEEecCCCCCCh
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELV---------SFLS---------------------SGRSLCSLKLRHCHLDR 303 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~---------~~l~---------------------~l~~L~~L~Ls~n~l~~ 303 (462)
+++|++|++++|.+.......++. +. ..+. ..++|+.|+|++|.+++
T Consensus 170 --l~~L~~L~L~~N~l~~~~~~~l~~-L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 170 --TTSLQNLQLSSNRLTHVDLSLIPS-LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 246 (597)
T ss_dssp --CTTCCEEECTTSCCSBCCGGGCTT-CSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC
T ss_pred --CCcCcEEECcCCCCCCcChhhhhh-hhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC
Confidence 789999999999998743221100 00 0000 01246666666666665
Q ss_pred hhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCC
Q 012515 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 383 (462)
Q Consensus 304 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 383 (462)
. .. ...+++|++|+|++|.+++..| ..+. ++++|+.|+|++|+++. ++..+..+++|
T Consensus 247 ~--~~-----l~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L 303 (597)
T 3oja_B 247 T--AW-----LLNYPGLVEVDLSYNELEKIMY--------HPFV---KMQRLERLYISNNRLVA-----LNLYGQPIPTL 303 (597)
T ss_dssp C--GG-----GGGCTTCSEEECCSSCCCEEES--------GGGT---TCSSCCEEECTTSCCCE-----EECSSSCCTTC
T ss_pred C--hh-----hccCCCCCEEECCCCccCCCCH--------HHhc---CccCCCEEECCCCCCCC-----CCcccccCCCC
Confidence 2 11 3456889999999999987554 4455 66899999999999996 56666778999
Q ss_pred CEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012515 384 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 384 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
+.|+|++|.++. +| ..+..+++|+.|++++|+++... +.. .++|+.|++++|++..
T Consensus 304 ~~L~Ls~N~l~~------i~---~~~~~l~~L~~L~L~~N~l~~~~-------~~~-~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 304 KVLDLSHNHLLH------VE---RNQPQFDRLENLYLDHNSIVTLK-------LST-HHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CEEECCSSCCCC------CG---GGHHHHTTCSEEECCSSCCCCCC-------CCT-TCCCSEEECCSSCEEH
T ss_pred cEEECCCCCCCc------cC---cccccCCCCCEEECCCCCCCCcC-------hhh-cCCCCEEEeeCCCCCC
Confidence 999999999986 44 33455689999999999998842 444 3569999999999864
No 43
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=4.5e-19 Score=169.52 Aligned_cols=215 Identities=20% Similarity=0.143 Sum_probs=135.4
Q ss_pred ccceeeeccccchHhh-hhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++.....+ ..+..+++|++|++++|.+..... +..+++|++|++++|.++...
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l~------------ 96 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL------------ 96 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEEE------------
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCcccccc------------
Confidence 3445555555544433 345566677777777666543221 234666777777776655211
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 333 (462)
..++|++|++++|.+..... ..+++|++|++++|.++...+..+ ..+++|++|++++|.+++.
T Consensus 97 -~~~~L~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 97 -VGPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp -ECTTCCEEECCSSCCSEEEE-----------CCCSSCEEEECCSSCCCSGGGBCT-----GGGSSEEEEECTTSCCCEE
T ss_pred -CCCCcCEEECCCCccCCcCc-----------cccCCCCEEECCCCCCCCccchhh-----hccCCCCEEECCCCCCCcc
Confidence 14567777777777655211 235678888888888776433322 3357788888888887753
Q ss_pred ccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCC
Q 012515 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 413 (462)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 413 (462)
.+ ..+.. .+++|++|+|++|++++. +....+++|++|++++|.|++ ++ ..+..++
T Consensus 160 ~~--------~~~~~--~l~~L~~L~L~~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~------l~---~~~~~l~ 214 (317)
T 3o53_A 160 NF--------AELAA--SSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAF------MG---PEFQSAA 214 (317)
T ss_dssp EG--------GGGGG--GTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCE------EC---GGGGGGT
T ss_pred cH--------HHHhh--ccCcCCEEECCCCcCccc------ccccccccCCEEECCCCcCCc------ch---hhhcccC
Confidence 32 22211 346788888888888762 223357788888888888876 33 3355668
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 414 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 414 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
+|+.|++++|+|+. ++..+.. .++|+.|++++|++.
T Consensus 215 ~L~~L~L~~N~l~~-----l~~~~~~-l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 215 GVTWISLRNNKLVL-----IEKALRF-SQNLEHFDLRGNGFH 250 (317)
T ss_dssp TCSEEECTTSCCCE-----ECTTCCC-CTTCCEEECTTCCCB
T ss_pred cccEEECcCCcccc-----hhhHhhc-CCCCCEEEccCCCcc
Confidence 88888888888886 4555655 356888888888886
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=3.4e-19 Score=186.45 Aligned_cols=136 Identities=14% Similarity=0.096 Sum_probs=76.8
Q ss_pred ccceeeeccccchH------------------hhhhhh--cCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccC
Q 012515 175 YARCLRLQNALCVE------------------ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH 234 (462)
Q Consensus 175 ~~~~l~l~~~~~~~------------------~~~~l~--~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~ 234 (462)
.++.+++.++.... ++..+. ++++|++|++++|.+....+.. +.++++|++|++++
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVAC 282 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEECTT
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEEECcC
Confidence 44556666665555 566666 7777777777777644332211 34567777777777
Q ss_pred CC-CCh-hHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHH--hhcCCCCCCEEecCCCCCChhhHHHHH
Q 012515 235 CK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVF 310 (462)
Q Consensus 235 ~~-l~~-~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 310 (462)
|. ++. ..+..+... . ....+.+|++|++++|.+.. ++. .+..+++|++|++++|.+.+..+ .
T Consensus 283 n~~l~~~~lp~~~~~L-~-~~~~l~~L~~L~L~~n~l~~---------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-- 348 (636)
T 4eco_A 283 NRGISGEQLKDDWQAL-A-DAPVGEKIQIIYIGYNNLKT---------FPVETSLQKMKKLGMLECLYNQLEGKLP-A-- 348 (636)
T ss_dssp CTTSCHHHHHHHHHHH-H-HSGGGGTCCEEECCSSCCSS---------CCCHHHHTTCTTCCEEECCSCCCEEECC-C--
T ss_pred CCCCccccchHHHHhh-h-ccccCCCCCEEECCCCcCCc---------cCchhhhccCCCCCEEeCcCCcCccchh-h--
Confidence 76 665 455544331 0 00013667777777776654 333 55666677777777776663333 1
Q ss_pred HHHhhCCCCccEEEecCCCCC
Q 012515 311 SSLLEASSSLSILDLSGNSIG 331 (462)
Q Consensus 311 ~~l~~~~~~L~~L~Ls~n~l~ 331 (462)
+..+++|++|++++|.++
T Consensus 349 ---~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 349 ---FGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp ---CEEEEEESEEECCSSEEE
T ss_pred ---hCCCCCCCEEECCCCccc
Confidence 123345555555555544
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=7.2e-19 Score=188.00 Aligned_cols=199 Identities=16% Similarity=0.140 Sum_probs=121.1
Q ss_pred HhcCCCccEEEccCCCCChhHH---------HHHHHHHhcccc--cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCC
Q 012515 221 IQNSETLASLEFLHCKLSPSFV---------EGICRSLCSKRK--RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGR 289 (462)
Q Consensus 221 ~~~~~~L~~L~L~~~~l~~~~~---------~~l~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~ 289 (462)
+.++++|++|+|++|.++.... ..+...+..... .+.+|++|++++|.+.. .++..+..++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--------~iP~~l~~L~ 515 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT--------QLPDFLYDLP 515 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--------SCCGGGGGCS
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc--------cChHHHhCCC
Confidence 3457778888888887775200 111111222222 36778888888877666 4556677778
Q ss_pred CCCEEecCCCC-CCh-hhHHHHHHH--HhhCCCCccEEEecCCCCCCcccccCcccHHH--hhhCCCCCCCccEEEccCC
Q 012515 290 SLCSLKLRHCH-LDR-DFGRMVFSS--LLEASSSLSILDLSGNSIGGWLSKYDRSGPLF--SLGAGKSLQSLRLLNLRGN 363 (462)
Q Consensus 290 ~L~~L~Ls~n~-l~~-~~~~~l~~~--l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~--~l~~~~~l~~L~~L~L~~n 363 (462)
+|++|+|++|+ +++ ..+..+... .+..+++|++|+|++|.++ .+| . .+. ++++|+.|+|++|
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip--------~~~~l~---~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP--------ASASLQ---KMVKLGLLDCVHN 583 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC--------CHHHHT---TCTTCCEEECTTS
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC--------Chhhhh---cCCCCCEEECCCC
Confidence 88888888887 776 556555431 1233457888888888777 333 3 444 4567777777777
Q ss_pred CCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC-ccEEEccCCCCChhhHHHHHHHHhcCC-
Q 012515 364 NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP-LVELYLENCELSGRGVSQLLDTLSTLR- 441 (462)
Q Consensus 364 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~l~- 441 (462)
+++. ++ .+..+++|+.|++++|.++. +| ..+..+++ |+.|++++|+++. ++..+....
T Consensus 584 ~l~~-----lp-~~~~L~~L~~L~Ls~N~l~~------lp---~~l~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~ 643 (876)
T 4ecn_A 584 KVRH-----LE-AFGTNVKLTDLKLDYNQIEE------IP---EDFCAFTDQVEGLGFSHNKLKY-----IPNIFNAKSV 643 (876)
T ss_dssp CCCB-----CC-CCCTTSEESEEECCSSCCSC------CC---TTSCEECTTCCEEECCSSCCCS-----CCSCCCTTCS
T ss_pred Cccc-----ch-hhcCCCcceEEECcCCcccc------ch---HHHhhccccCCEEECcCCCCCc-----Cchhhhcccc
Confidence 7773 44 66677777777777777663 44 44555566 7777777777664 333333311
Q ss_pred CCCcEEEccCCCCCCccc
Q 012515 442 RPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 442 ~~L~~L~Ls~N~l~~~~~ 459 (462)
++|+.|++++|+|++.+|
T Consensus 644 ~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp SCEEEEECCSSCTTTTSS
T ss_pred CCCCEEECcCCcCCCccc
Confidence 226666777666665543
No 46
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=3e-18 Score=163.04 Aligned_cols=192 Identities=20% Similarity=0.242 Sum_probs=128.6
Q ss_pred CCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCc
Q 012515 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (462)
Q Consensus 196 ~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (462)
+++|++|+++++.+.... . ...+++|++|++++|.+++... +. .+.+|++|++++|.+..
T Consensus 40 l~~L~~L~l~~~~i~~l~-~-----~~~l~~L~~L~L~~n~i~~~~~--~~--------~l~~L~~L~L~~n~l~~---- 99 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-G-----VQYLNNLIGLELKDNQITDLAP--LK--------NLTKITELELSGNPLKN---- 99 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-T-----GGGCTTCCEEECCSSCCCCCGG--GT--------TCCSCCEEECCSCCCSC----
T ss_pred cCCcCEEEeeCCCccCch-h-----hhccCCCCEEEccCCcCCCChh--Hc--------cCCCCCEEEccCCcCCC----
Confidence 355777777777654421 1 3457788888888887765432 11 16778888888887765
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCc
Q 012515 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (462)
Q Consensus 276 ~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L 355 (462)
+ ..+..+++|++|++++|.+.+... ...+++|++|++++|.+++.. . +. .+++|
T Consensus 100 -----~-~~~~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~~---------~-l~---~l~~L 153 (308)
T 1h6u_A 100 -----V-SAIAGLQSIKTLDLTSTQITDVTP-------LAGLSNLQVLYLDLNQITNIS---------P-LA---GLTNL 153 (308)
T ss_dssp -----C-GGGTTCTTCCEEECTTSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG---------G-GG---GCTTC
T ss_pred -----c-hhhcCCCCCCEEECCCCCCCCchh-------hcCCCCCCEEECCCCccCcCc---------c-cc---CCCCc
Confidence 1 246667788888888888776321 345678888888888877521 1 33 45778
Q ss_pred cEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH
Q 012515 356 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 435 (462)
Q Consensus 356 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 435 (462)
+.|++++|++++ +++ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++++..
T Consensus 154 ~~L~l~~n~l~~-----~~~-l~~l~~L~~L~l~~n~l~~------~~----~l~~l~~L~~L~L~~N~l~~~~------ 211 (308)
T 1h6u_A 154 QYLSIGNAQVSD-----LTP-LANLSKLTTLKADDNKISD------IS----PLASLPNLIEVHLKNNQISDVS------ 211 (308)
T ss_dssp CEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCC------CG----GGGGCTTCCEEECTTSCCCBCG------
T ss_pred cEEEccCCcCCC-----Chh-hcCCCCCCEEECCCCccCc------Ch----hhcCCCCCCEEEccCCccCccc------
Confidence 888888888876 333 7777888888888888776 32 2455678888888888887742
Q ss_pred HHhcCCCCCcEEEccCCCCCC
Q 012515 436 TLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 436 ~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
.+.. .++|++|++++|++++
T Consensus 212 ~l~~-l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 PLAN-TSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGTT-CTTCCEEEEEEEEEEC
T ss_pred cccC-CCCCCEEEccCCeeec
Confidence 2555 3558888888887765
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=9.5e-19 Score=168.23 Aligned_cols=225 Identities=19% Similarity=0.155 Sum_probs=115.7
Q ss_pred ccceeeeccccchHhhh-hhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++....++. .+.++++|++|++++|.+....... +..+++|++|++++|.++..... .
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~l~~~---------~ 119 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA----FAPLVKLERLYLSKNQLKELPEK---------M 119 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCSBCCSS---------C
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH----hcCCCCCCEEECCCCcCCccChh---------h
Confidence 33445555554444333 3445566666666666544321111 23456666666666655421100 0
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 333 (462)
..+|++|++++|.+.. .....+..+++|++|++++|.+...+... ..+..+++|++|++++|.++..
T Consensus 120 --~~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 120 --PKTLQELRVHENEITK--------VRKSVFNGLNQMIVVELGTNPLKSSGIEN---GAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp --CTTCCEEECCSSCCCB--------BCHHHHTTCTTCCEEECCSSCCCGGGBCT---TGGGGCTTCCEEECCSSCCCSC
T ss_pred --cccccEEECCCCcccc--------cCHhHhcCCccccEEECCCCcCCccCcCh---hhccCCCCcCEEECCCCccccC
Confidence 2456666666666655 23344555666666666666664321110 0023346666666666666531
Q ss_pred ccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCC
Q 012515 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 413 (462)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 413 (462)
| ..+. ++|++|++++|++++. .+..+..+++|++|++++|.+++. +. ..+..++
T Consensus 187 -~--------~~~~-----~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~------~~--~~~~~l~ 240 (330)
T 1xku_A 187 -P--------QGLP-----PSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV------DN--GSLANTP 240 (330)
T ss_dssp -C--------SSCC-----TTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE------CT--TTGGGST
T ss_pred -C--------cccc-----ccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee------Ch--hhccCCC
Confidence 1 1111 4566666666666652 234455666666666666666542 11 2344456
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCc
Q 012515 414 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 414 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
+|+.|++++|+++. ++..+.. .++|++|++++|+|++.
T Consensus 241 ~L~~L~L~~N~l~~-----lp~~l~~-l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 241 HLRELHLNNNKLVK-----VPGGLAD-HKYIQVVYLHNNNISAI 278 (330)
T ss_dssp TCCEEECCSSCCSS-----CCTTTTT-CSSCCEEECCSSCCCCC
T ss_pred CCCEEECCCCcCcc-----CChhhcc-CCCcCEEECCCCcCCcc
Confidence 66666666666664 4444444 34466666666666543
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=9.5e-19 Score=175.71 Aligned_cols=208 Identities=20% Similarity=0.143 Sum_probs=161.0
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCch
Q 012515 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (462)
+++++|+|++|.+....... +.++++|++|+|++|.++...+..+.. +.+|++|++++|.+..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------l~~L~~L~L~~n~l~~----- 137 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNG--------LASLNTLELFDNWLTV----- 137 (452)
T ss_dssp TTCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSSCCSB-----
T ss_pred CCccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhccC--------cccCCEEECCCCcCCc-----
Confidence 57999999999876543222 457899999999999998654444332 7899999999999887
Q ss_pred hHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCcc
Q 012515 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (462)
Q Consensus 277 ~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~ 356 (462)
.....+..+++|++|+|++|.+....... +..+++|++|++++|...+..+ . ..+.++++|+
T Consensus 138 ---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~--------~--~~~~~l~~L~ 199 (452)
T 3zyi_A 138 ---IPSGAFEYLSKLRELWLRNNPIESIPSYA-----FNRVPSLMRLDLGELKKLEYIS--------E--GAFEGLFNLK 199 (452)
T ss_dssp ---CCTTTSSSCTTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEEC--------T--TTTTTCTTCC
T ss_pred ---cChhhhcccCCCCEEECCCCCcceeCHhH-----HhcCCcccEEeCCCCCCccccC--------h--hhccCCCCCC
Confidence 23445778899999999999998643322 3567999999999965443222 1 2233678999
Q ss_pred EEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHH
Q 012515 357 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 436 (462)
Q Consensus 357 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 436 (462)
.|+|++|++++ + +.+..+++|++|++++|.|++. .+ ..+..+++|+.|++++|+++.. ....
T Consensus 200 ~L~L~~n~l~~-----~-~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~L~~n~l~~~----~~~~ 261 (452)
T 3zyi_A 200 YLNLGMCNIKD-----M-PNLTPLVGLEELEMSGNHFPEI-----RP---GSFHGLSSLKKLWVMNSQVSLI----ERNA 261 (452)
T ss_dssp EEECTTSCCSS-----C-CCCTTCTTCCEEECTTSCCSEE-----CG---GGGTTCTTCCEEECTTSCCCEE----CTTT
T ss_pred EEECCCCcccc-----c-ccccccccccEEECcCCcCccc-----Cc---ccccCccCCCEEEeCCCcCceE----CHHH
Confidence 99999999996 3 3578899999999999999872 23 5678889999999999999885 2445
Q ss_pred HhcCCCCCcEEEccCCCCCCcc
Q 012515 437 LSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 437 l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
+.. .++|++|+|++|+|++..
T Consensus 262 ~~~-l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 262 FDG-LASLVELNLAHNNLSSLP 282 (452)
T ss_dssp TTT-CTTCCEEECCSSCCSCCC
T ss_pred hcC-CCCCCEEECCCCcCCccC
Confidence 666 356999999999998644
No 49
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=5.5e-19 Score=168.36 Aligned_cols=212 Identities=19% Similarity=0.141 Sum_probs=151.0
Q ss_pred cceeeeccccchH-hhhhh--hcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 012515 176 ARCLRLQNALCVE-ETCQL--LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (462)
Q Consensus 176 ~~~l~l~~~~~~~-~~~~l--~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~ 252 (462)
++.+.+.++.... .+..+ ..+++|++|++++|.+......+.......+++|++|+|++|.+....+..+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~------- 165 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV------- 165 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC-------
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh-------
Confidence 4555666555443 23333 5678999999999997653221111113468999999999999875443332
Q ss_pred cccCCCccEEecCCCCCCCCCCchhHHHHH--HhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCC
Q 012515 253 RKRIHKIENLSIDISSFIENCPSSVVVELV--SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI 330 (462)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~--~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 330 (462)
..+.+|++|++++|.+.. ...+. ..+..+++|++|++++|.++... ..+..+...+++|++|+|++|.+
T Consensus 166 -~~l~~L~~L~Ls~N~l~~------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 166 -RAFPALTSLDLSDNPGLG------ERGLMAALCPHKFPAIQNLALRNTGMETPT--GVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp -CCCTTCCEEECCSCTTCH------HHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--HHHHHHHHHTCCCSSEECTTSCC
T ss_pred -ccCCCCCEEECCCCCCcc------chhhhHHHhhhcCCCCCEEECCCCCCCchH--HHHHHHHhcCCCCCEEECCCCCC
Confidence 227899999999999764 01122 22357889999999999997422 22223344569999999999999
Q ss_pred CCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcC
Q 012515 331 GGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 410 (462)
Q Consensus 331 ~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~ 410 (462)
++..| ..+..+..+++|++|+|++|+|+. ++..+. ++|++|++++|.|++ +| .+.
T Consensus 237 ~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~--~~L~~L~Ls~N~l~~------~~----~~~ 291 (310)
T 4glp_A 237 RATVN--------PSAPRCMWSSALNSLNLSFAGLEQ-----VPKGLP--AKLRVLDLSSNRLNR------AP----QPD 291 (310)
T ss_dssp CCCCC--------SCCSSCCCCTTCCCEECCSSCCCS-----CCSCCC--SCCSCEECCSCCCCS------CC----CTT
T ss_pred Cccch--------hhHHhccCcCcCCEEECCCCCCCc-----hhhhhc--CCCCEEECCCCcCCC------Cc----hhh
Confidence 97544 444544444799999999999995 555553 799999999999996 43 256
Q ss_pred CCCCccEEEccCCCCChh
Q 012515 411 RCNPLVELYLENCELSGR 428 (462)
Q Consensus 411 ~~~~L~~L~L~~n~l~~~ 428 (462)
.+++|+.|++++|++++.
T Consensus 292 ~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 292 ELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp SCCCCSCEECSSTTTSCC
T ss_pred hCCCccEEECcCCCCCCC
Confidence 679999999999999874
No 50
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=1.6e-19 Score=188.95 Aligned_cols=215 Identities=15% Similarity=0.173 Sum_probs=115.9
Q ss_pred hhhhhhcCCCcCEEEeccCCChHH-------------HHHHHHHHHh--cCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 189 ETCQLLRESKLQSLVLRWIRFEEH-------------VQALCKLLIQ--NSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 189 ~~~~l~~~~~L~~L~L~~~~~~~~-------------~~~l~~~l~~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
++..+.++++|++|+|++|.+... .....+.... ++++|++|+|++|.+....+..+..
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~------ 271 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA------ 271 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT------
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc------
Confidence 344555666666666666665441 0000111122 4566666666666665544433322
Q ss_pred ccCCCccEEecCCCC-CCCCCCchhHHHHHHhhcCC------CCCCEEecCCCCCChhhHH--HHHHHHhhCCCCccEEE
Q 012515 254 KRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSG------RSLCSLKLRHCHLDRDFGR--MVFSSLLEASSSLSILD 324 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~~l~~l------~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~ 324 (462)
+.+|++|++++|. +.. ..++..+..+ ++|++|++++|.++ ..+. .+ ..+++|++|+
T Consensus 272 --l~~L~~L~Ls~n~~l~~-------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-----~~l~~L~~L~ 336 (636)
T 4eco_A 272 --LPEMQLINVACNRGISG-------EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-----QKMKKLGMLE 336 (636)
T ss_dssp --CSSCCEEECTTCTTSCH-------HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-----TTCTTCCEEE
T ss_pred --CCCCCEEECcCCCCCcc-------ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-----ccCCCCCEEe
Confidence 5666666666665 331 1233333333 56666666666665 2332 22 3356666666
Q ss_pred ecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCC-CCEEeCCCCCCCchhHHhHHH
Q 012515 325 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-LEILDISDNTIEDDGIRSLIP 403 (462)
Q Consensus 325 Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~N~l~~~g~~~l~~ 403 (462)
+++|.+++.+| .+..+++|+.|++++|+++. ++..+..+++ |++|++++|.++. +|
T Consensus 337 L~~N~l~g~ip------------~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~------lp 393 (636)
T 4eco_A 337 CLYNQLEGKLP------------AFGSEIKLASLNLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKY------IP 393 (636)
T ss_dssp CCSCCCEEECC------------CCEEEEEESEEECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSS------CC
T ss_pred CcCCcCccchh------------hhCCCCCCCEEECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcc------cc
Confidence 66666653221 11234566667777766663 5556666666 7777777777664 44
Q ss_pred HHHhhcCCCC--CccEEEccCCCCChhhHHHHHHHHh-------cCCCCCcEEEccCCCCC
Q 012515 404 YFVQASERCN--PLVELYLENCELSGRGVSQLLDTLS-------TLRRPPTSLSIADNNLG 455 (462)
Q Consensus 404 ~l~~~l~~~~--~L~~L~L~~n~l~~~~~~~l~~~l~-------~l~~~L~~L~Ls~N~l~ 455 (462)
..+...+ +|+.|++++|+++.. ++..+. . ..+|++|++++|.|+
T Consensus 394 ---~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~~~~~~~~-~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 394 ---NIFDAKSVSVMSAIDFSYNEIGSV----DGKNFDPLDPTPFK-GINVSSINLSNNQIS 446 (636)
T ss_dssp ---SCCCTTCSSCEEEEECCSSCTTTT----TTCSSCTTCSSCCC-CCCEEEEECCSSCCC
T ss_pred ---hhhhhcccCccCEEECcCCcCCCc----chhhhccccccccc-CCCCCEEECcCCccC
Confidence 3333322 677777777777653 223333 2 234777777777776
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=8.1e-19 Score=175.58 Aligned_cols=209 Identities=18% Similarity=0.148 Sum_probs=161.5
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCch
Q 012515 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (462)
++++.|+|++|.+....... +.++++|++|+|++|.++......+.. +.+|++|++++|.+..
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~--------l~~L~~L~L~~n~l~~----- 126 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNG--------LANLNTLELFDNRLTT----- 126 (440)
T ss_dssp TTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTT--------CSSCCEEECCSSCCSS-----
T ss_pred CCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccC--------CccCCEEECCCCcCCe-----
Confidence 57899999999876543222 457899999999999998655444332 7899999999999987
Q ss_pred hHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCcc
Q 012515 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (462)
Q Consensus 277 ~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~ 356 (462)
.....+..+++|++|+|++|.+....... +..+++|++|++++|...+..+ . ..+.++++|+
T Consensus 127 ---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~--------~--~~~~~l~~L~ 188 (440)
T 3zyj_A 127 ---IPNGAFVYLSKLKELWLRNNPIESIPSYA-----FNRIPSLRRLDLGELKRLSYIS--------E--GAFEGLSNLR 188 (440)
T ss_dssp ---CCTTTSCSCSSCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEEC--------T--TTTTTCSSCC
T ss_pred ---eCHhHhhccccCceeeCCCCcccccCHHH-----hhhCcccCEeCCCCCCCcceeC--------c--chhhcccccC
Confidence 23346778899999999999998744332 3567999999999965443222 1 2233678999
Q ss_pred EEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHH
Q 012515 357 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 436 (462)
Q Consensus 357 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 436 (462)
+|+|++|+++. ++ .+..+++|++|++++|.|++. .+ ..+..+++|+.|++++|+++.. ....
T Consensus 189 ~L~L~~n~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~L~~n~l~~~----~~~~ 250 (440)
T 3zyj_A 189 YLNLAMCNLRE-----IP-NLTPLIKLDELDLSGNHLSAI-----RP---GSFQGLMHLQKLWMIQSQIQVI----ERNA 250 (440)
T ss_dssp EEECTTSCCSS-----CC-CCTTCSSCCEEECTTSCCCEE-----CT---TTTTTCTTCCEEECTTCCCCEE----CTTS
T ss_pred eecCCCCcCcc-----cc-ccCCCcccCEEECCCCccCcc-----Ch---hhhccCccCCEEECCCCceeEE----Chhh
Confidence 99999999996 33 478899999999999999872 23 5678889999999999999885 2345
Q ss_pred HhcCCCCCcEEEccCCCCCCccc
Q 012515 437 LSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 437 l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
+.. .++|++|+|++|+|++..+
T Consensus 251 ~~~-l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 251 FDN-LQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp STT-CTTCCEEECTTSCCCCCCT
T ss_pred hcC-CCCCCEEECCCCCCCccCh
Confidence 556 4569999999999986543
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=3.7e-19 Score=166.63 Aligned_cols=208 Identities=16% Similarity=0.126 Sum_probs=128.4
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCch
Q 012515 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (462)
+++++|++++|.+....... +..+++|++|++++|.++......+.. +.+|++|++++|.+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~----- 90 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS----- 90 (276)
T ss_dssp TTCCEEECTTCCCCEECTTT----TTTCTTCSEEECTTCCCCEECTTTTTT--------CTTCCEEECTTCCCCE-----
T ss_pred CCccEEECCCCcccccCHhH----hccccCCcEEECCCCcCCccCHHHccC--------CcCCCEEECCCCccCc-----
Confidence 35777888777755432211 345777888888888776443322221 6778888888887766
Q ss_pred hHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc-ccccCcccHHHhhhCCCCCCCc
Q 012515 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW-LSKYDRSGPLFSLGAGKSLQSL 355 (462)
Q Consensus 277 ~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~~l~~~~~l~~L 355 (462)
.....+..+++|++|++++|.+....... ...+++|++|++++|.+++. .| ..+. ++++|
T Consensus 91 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~l~--------~~~~---~l~~L 151 (276)
T 2z62_A 91 ---LALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFKLP--------EYFS---NLTNL 151 (276)
T ss_dssp ---ECTTTTTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCCCC--------GGGG---GCTTC
T ss_pred ---cChhhhcCCccccEEECCCCCccccCchh-----cccCCCCCEEECcCCccceecCc--------hhhc---cCCCC
Confidence 23345666778888888888776633322 24467788888888887652 12 3444 45778
Q ss_pred cEEEccCCCCCcchHHHHHHHhhcCCCCC----EEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHH
Q 012515 356 RLLNLRGNNLCKADARDLGSALVHIPNLE----ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS 431 (462)
Q Consensus 356 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~----~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 431 (462)
++|++++|++++... ..+..+++|+ .|++++|.++. ++ .......+|+.|++++|+++..
T Consensus 152 ~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l~L~ls~n~l~~------~~---~~~~~~~~L~~L~L~~n~l~~~--- 215 (276)
T 2z62_A 152 EHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSLDLSLNPMNF------IQ---PGAFKEIRLKELALDTNQLKSV--- 215 (276)
T ss_dssp CEEECCSSCCCEECG----GGGHHHHTCTTCCEEEECCSSCCCE------EC---TTSSCSCCEEEEECCSSCCSCC---
T ss_pred CEEECCCCCCCcCCH----HHhhhhhhccccceeeecCCCcccc------cC---ccccCCCcccEEECCCCceeec---
Confidence 888888888776321 2233333343 78888888775 32 1222234788888888887763
Q ss_pred HHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012515 432 QLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 432 ~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
....+.. .++|++|++++|++....
T Consensus 216 -~~~~~~~-l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 216 -PDGIFDR-LTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp -CTTTTTT-CCSCCEEECCSSCBCCCT
T ss_pred -CHhHhcc-cccccEEEccCCcccccC
Confidence 1223344 345888888888877554
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=7.7e-19 Score=165.24 Aligned_cols=231 Identities=16% Similarity=0.093 Sum_probs=169.3
Q ss_pred cccceeeeccccchHhhh-hhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhc
Q 012515 174 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCS 251 (462)
Q Consensus 174 ~~~~~l~l~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~ 251 (462)
..++.+.+.++....++. .+..+++|++|++++|.+....... +..+++|++|++++|. ++...+..+..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~~---- 103 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFHG---- 103 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTTT----
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhcC----
Confidence 356777888877766553 4668899999999999876542221 3568999999999997 76543333322
Q ss_pred ccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCC
Q 012515 252 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (462)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 331 (462)
+.+|++|++++|.+.. .....+..+++|++|++++|.+....... +..+++|++|++++|.++
T Consensus 104 ----l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 104 ----LGRLHTLHLDRCGLQE--------LGPGLFRGLAALQYLYLQDNALQALPDDT-----FRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp ----CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCC
T ss_pred ----CcCCCEEECCCCcCCE--------ECHhHhhCCcCCCEEECCCCcccccCHhH-----hccCCCccEEECCCCccc
Confidence 7899999999999887 33456778899999999999998744432 245789999999999998
Q ss_pred CcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCC
Q 012515 332 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 411 (462)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~ 411 (462)
+..+ ..+. ++++|+.|++++|++++. .+..+..+++|+.|++++|.+++ ++. ..+..
T Consensus 167 ~~~~--------~~~~---~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~--~~~~~ 223 (285)
T 1ozn_A 167 SVPE--------RAFR---GLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSA------LPT--EALAP 223 (285)
T ss_dssp EECT--------TTTT---TCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSC------CCH--HHHTT
T ss_pred ccCH--------HHhc---CccccCEEECCCCccccc----CHhHccCcccccEeeCCCCcCCc------CCH--HHccc
Confidence 5332 2233 668999999999999973 46678899999999999999987 321 44677
Q ss_pred CCCccEEEccCCCCChhh-HHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 412 CNPLVELYLENCELSGRG-VSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 412 ~~~L~~L~L~~n~l~~~~-~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
+++|+.|++++|+++... ...+...+.. +..+.|.+....|
T Consensus 224 l~~L~~L~l~~N~~~c~~~~~~~~~~l~~-------~~~~~~~~~c~~p 265 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRARPLWAWLQK-------FRGSSSEVPCSLP 265 (285)
T ss_dssp CTTCCEEECCSSCEECSGGGHHHHHHHHH-------CCSEECCCBEEES
T ss_pred CcccCEEeccCCCccCCCCcHHHHHHHHh-------cccccCccccCCc
Confidence 899999999999986432 2233344433 3345555544433
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=3.4e-19 Score=173.05 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=32.2
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012515 353 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
..++.++|+++.+++.++..++..+..+++|++|++++|.|+. +|. ..+..+++|+.|++++|+++.
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~------i~~--~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS------VPD--GIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCBCC
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc------cCH--HHHhcCCCCCEEEeeCCCccC
Confidence 3444555555555554444455555555555555555555443 321 123444555555555555444
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=5.6e-19 Score=166.51 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=16.7
Q ss_pred CCccEEEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCC
Q 012515 353 QSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIE 394 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~ 394 (462)
++|+.|+|++|+|+. ++. .+..+++|+.|++++|.|+
T Consensus 148 ~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 148 PKLEKLSLANNNLTE-----LPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TTCCEEECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCCEEECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcCC
Confidence 444455555554443 222 2334444555555555444
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=4.4e-19 Score=169.58 Aligned_cols=213 Identities=17% Similarity=0.101 Sum_probs=164.1
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012515 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.++.+++.++.....+. +..+++|++|++++|.+... ...++|++|++++|.++.....
T Consensus 59 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~~~----------- 117 (317)
T 3o53_A 59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSCS----------- 117 (317)
T ss_dssp TCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEEEC-----------
T ss_pred cCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcCcc-----------
Confidence 45666676666554333 67889999999999986642 2358999999999999854321
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcc
Q 012515 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 334 (462)
.+.+|++|++++|.+.. .....+..+++|++|++++|.+.+..+..+ ...+++|++|++++|.+++.
T Consensus 118 ~~~~L~~L~l~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 118 RGQGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp CCSSCEEEECCSSCCCS--------GGGBCTGGGSSEEEEECTTSCCCEEEGGGG----GGGTTTCCEEECTTSCCCEE-
T ss_pred ccCCCCEEECCCCCCCC--------ccchhhhccCCCCEEECCCCCCCcccHHHH----hhccCcCCEEECCCCcCccc-
Confidence 16789999999999987 334456778999999999999998665544 23468999999999999852
Q ss_pred cccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC
Q 012515 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 335 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
.....+++|++|+|++|+++. +++.+..+++|+.|++++|.|+. +| ..+..+++
T Consensus 185 ------------~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~L~~N~l~~------l~---~~~~~l~~ 238 (317)
T 3o53_A 185 ------------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL------IE---KALRFSQN 238 (317)
T ss_dssp ------------ECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE------EC---TTCCCCTT
T ss_pred ------------ccccccccCCEEECCCCcCCc-----chhhhcccCcccEEECcCCcccc------hh---hHhhcCCC
Confidence 111245899999999999996 66678899999999999999996 55 56788899
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccC
Q 012515 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIAD 451 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~ 451 (462)
|+.|++++|+++... ++..+.. .+.|+.|++++
T Consensus 239 L~~L~l~~N~~~~~~---~~~~~~~-~~~L~~l~l~~ 271 (317)
T 3o53_A 239 LEHFDLRGNGFHCGT---LRDFFSK-NQRVQTVAKQT 271 (317)
T ss_dssp CCEEECTTCCCBHHH---HHHHHHT-CHHHHHHHHHH
T ss_pred CCEEEccCCCccCcC---HHHHHhc-cccceEEECCC
Confidence 999999999999432 4455555 23478887773
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=174.61 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=97.1
Q ss_pred cccceeeeccccchHhh-hhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 012515 174 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (462)
Q Consensus 174 ~~~~~l~l~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~ 252 (462)
..++.+++.++.....+ ..+.++++|++|++++|.+....+.. +.++++|++|+|++|.++.....
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~lp~~--------- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLVKISCH--------- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCCEEECC---------
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCceeecCcc---------
Confidence 57788899988877655 56779999999999999976543222 45789999999999999842111
Q ss_pred cccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCc--cEEEecCCCC
Q 012515 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSL--SILDLSGNSI 330 (462)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L--~~L~Ls~n~l 330 (462)
.+.+|++|++++|.+... .++..++.+++|++|++++|.+.+..... +++| ++|++++|.+
T Consensus 88 --~l~~L~~L~L~~N~l~~~-------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--------l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDAL-------PICKEFGNMSQLKFLGLSTTHLEKSSVLP--------IAHLNISKVLLVLGET 150 (520)
T ss_dssp --CCCCCSEEECCSSCCSSC-------CCCGGGGGCTTCCEEEEEESSCCGGGGGG--------GTTSCEEEEEEEECTT
T ss_pred --ccCCccEEeccCCccccc-------cchhhhccCCcceEEEecCcccchhhccc--------cccceeeEEEeecccc
Confidence 278999999999998762 13467788999999999999998743332 3555 8888877776
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=9.5e-19 Score=177.06 Aligned_cols=215 Identities=20% Similarity=0.143 Sum_probs=155.2
Q ss_pred ccceeeeccccchHhh-hhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++.....+ ..+..+++|+.|+|++|.+....+ +..+++|++|+|++|.++...
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~------------ 96 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL------------ 96 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE------------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC------------
Confidence 4566677776665543 456688888888888888654332 346788888888888776321
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 333 (462)
..++|++|++++|.+..... ..+++|++|++++|.+++..+..+ ..+++|++|+|++|.+++.
T Consensus 97 -~~~~L~~L~L~~N~l~~~~~-----------~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 97 -VGPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp -ECTTCCEEECCSSCCCCEEE-----------CCCSSCEEEECCSSCCCSGGGBCG-----GGGSSEEEEECTTSCCCEE
T ss_pred -CCCCcCEEECcCCcCCCCCc-----------cccCCCCEEECCCCCCCCCCchhh-----cCCCCCCEEECCCCCCCCc
Confidence 14778889998888876222 235788999999999887544433 3358899999999998864
Q ss_pred ccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCC
Q 012515 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 413 (462)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 413 (462)
.+ ..+.. .+++|++|+|++|.|++. +.+..+++|+.|++++|.|++ ++ ..+..++
T Consensus 160 ~~--------~~l~~--~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~------~~---~~~~~l~ 214 (487)
T 3oja_A 160 NF--------AELAA--SSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAF------MG---PEFQSAA 214 (487)
T ss_dssp EG--------GGGGG--GTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCE------EC---GGGGGGT
T ss_pred Ch--------HHHhh--hCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCC------CC---HhHcCCC
Confidence 44 33321 347899999999998863 234468899999999999886 43 3356678
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 414 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 414 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
+|+.|++++|.|+. ++..+.. .++|+.|++++|++.
T Consensus 215 ~L~~L~Ls~N~l~~-----lp~~l~~-l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 215 GVTWISLRNNKLVL-----IEKALRF-SQNLEHFDLRGNGFH 250 (487)
T ss_dssp TCSEEECTTSCCCE-----ECTTCCC-CTTCCEEECTTCCBC
T ss_pred CccEEEecCCcCcc-----cchhhcc-CCCCCEEEcCCCCCc
Confidence 99999999999886 5555655 356999999999887
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=6.5e-19 Score=183.56 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=109.5
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHH-HhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc-
Q 012515 256 IHKIENLSIDISSFIENCPSSVVVELV-SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW- 333 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~- 333 (462)
+.+|++|++++|.+.. ... ..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+++.
T Consensus 398 l~~L~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKR--------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-----LGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp CTTCCEEECTTSEEES--------TTTTTTTTTCTTCCEEECTTSCCEECCTTTT-----TTCTTCCEEECTTCEEGGGE
T ss_pred CCCCCeeECCCCccCC--------ccChhhhhccccCCEEECcCCCCCccchhhh-----cCCCCCCEEECCCCcCCCcc
Confidence 4556666666665554 122 345566677777777777665444332 3456777777777776642
Q ss_pred ccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCC
Q 012515 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 413 (462)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 413 (462)
.+ . .+.++++|++|+|++|++++ ..+..+..+++|++|++++|.+++. .| ..+..++
T Consensus 465 ~~--------~---~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~ 521 (606)
T 3vq2_A 465 LS--------N---VFANTTNLTFLDLSKCQLEQ----ISWGVFDTLHRLQLLNMSHNNLLFL-----DS---SHYNQLY 521 (606)
T ss_dssp EC--------S---CCTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSCE-----EG---GGTTTCT
T ss_pred hH--------H---hhccCCCCCEEECCCCcCCc----cChhhhcccccCCEEECCCCcCCCc-----CH---HHccCCC
Confidence 22 2 23366888889999998886 2455678888899999999988762 23 5667778
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCc
Q 012515 414 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 414 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
+|+.|++++|+++. ++..+..+.++|++|++++|++...
T Consensus 522 ~L~~L~l~~N~l~~-----~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 522 SLSTLDCSFNRIET-----SKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TCCEEECTTSCCCC-----EESCGGGSCTTCCEEECCSCCCCCS
T ss_pred cCCEEECCCCcCcc-----cCHhHhhhcccCcEEEccCCCcccC
Confidence 89999999998886 5555666555689999999988754
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=6.9e-19 Score=183.36 Aligned_cols=226 Identities=18% Similarity=0.100 Sum_probs=176.1
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhH--HHHHHHHHhcc
Q 012515 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSK 252 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~--~~~l~~~l~~~ 252 (462)
.++.+.+.++....++ .+ .+++|++|++++|....... ...+++|++|++++|.++... +..+..
T Consensus 308 ~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~----- 374 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFK------KVALPSLSYLDLSRNALSFSGCCSYSDLG----- 374 (606)
T ss_dssp CCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECC------CCCCTTCCEEECCSSCEEEEEECCHHHHC-----
T ss_pred cCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchh------hccCCCCCEEECcCCccCCCcchhhhhcc-----
Confidence 5677888888886555 45 88999999999995433221 346899999999999887542 333332
Q ss_pred cccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCC
Q 012515 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (462)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 332 (462)
+++|++|++++|.+.. +...+..+++|++|++++|.+.+..+... +..+++|++|++++|.+++
T Consensus 375 ---~~~L~~L~L~~n~l~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 375 ---TNSLRHLDLSFNGAII---------MSANFMGLEELQHLDFQHSTLKRVTEFSA----FLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp ---CSCCCEEECCSCSEEE---------ECCCCTTCTTCCEEECTTSEEESTTTTTT----TTTCTTCCEEECTTSCCEE
T ss_pred ---CCcccEeECCCCcccc---------chhhccCCCCCCeeECCCCccCCccChhh----hhccccCCEEECcCCCCCc
Confidence 7899999999999776 33567788999999999999877544211 3457999999999999986
Q ss_pred cccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCC
Q 012515 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 412 (462)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~ 412 (462)
..+ ..+. ++++|++|++++|++++.. ++..+..+++|++|++++|.+++. .+ ..+..+
T Consensus 439 ~~~--------~~~~---~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l 496 (606)
T 3vq2_A 439 DFD--------GIFL---GLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQI-----SW---GVFDTL 496 (606)
T ss_dssp CCT--------TTTT---TCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTC
T ss_pred cch--------hhhc---CCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCcc-----Ch---hhhccc
Confidence 444 3334 6789999999999998621 456788999999999999999872 23 567788
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012515 413 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 413 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
++|+.|++++|+++.. .+..+..+ ++|++|++++|+|+.
T Consensus 497 ~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFL----DSSHYNQL-YSLSTLDCSFNRIET 535 (606)
T ss_dssp TTCCEEECCSSCCSCE----EGGGTTTC-TTCCEEECTTSCCCC
T ss_pred ccCCEEECCCCcCCCc----CHHHccCC-CcCCEEECCCCcCcc
Confidence 9999999999999985 35667663 569999999999983
No 61
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=3.3e-18 Score=182.92 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=92.6
Q ss_pred hhhhhh--cCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCC-CCh-hHHHHHHHHHhcccccCCCccEEec
Q 012515 189 ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSP-SFVEGICRSLCSKRKRIHKIENLSI 264 (462)
Q Consensus 189 ~~~~l~--~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~-l~~-~~~~~l~~~l~~~~~~~~~L~~L~l 264 (462)
++..+. ++++|++|+|++|.+....+.. +.++++|++|+|++|. ++. ..+..+.. +......+++|++|++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQIFYM 555 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTTTCCEEEC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHH----HhCCCCCCEEECcCCCCcccccchHHHHh-hhhcccccCCccEEEe
Confidence 555555 6777777777777644332211 3456777777777776 665 44444432 2111112456777777
Q ss_pred CCCCCCCCCCchhHHHHHH--hhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccH
Q 012515 265 DISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 342 (462)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 342 (462)
++|.+.. ++. .+..+++|++|+|++|.+. ..+ . +..+++|++|+|++|.++ .+|
T Consensus 556 s~N~L~~---------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-----~~~L~~L~~L~Ls~N~l~-~lp------- 611 (876)
T 4ecn_A 556 GYNNLEE---------FPASASLQKMVKLGLLDCVHNKVR-HLE-A-----FGTNVKLTDLKLDYNQIE-EIP------- 611 (876)
T ss_dssp CSSCCCB---------CCCHHHHTTCTTCCEEECTTSCCC-BCC-C-----CCTTSEESEEECCSSCCS-CCC-------
T ss_pred eCCcCCc---------cCChhhhhcCCCCCEEECCCCCcc-cch-h-----hcCCCcceEEECcCCccc-cch-------
Confidence 7777664 333 5566677777777777766 233 1 344566777777777666 222
Q ss_pred HHhhhCCCCCCC-ccEEEccCCCCCcchHHHHHHHhhcCC--CCCEEeCCCCCCC
Q 012515 343 LFSLGAGKSLQS-LRLLNLRGNNLCKADARDLGSALVHIP--NLEILDISDNTIE 394 (462)
Q Consensus 343 ~~~l~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~--~L~~L~Ls~N~l~ 394 (462)
..+. ++++ |+.|+|++|+++. ++..+...+ +|+.|++++|.++
T Consensus 612 -~~l~---~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 612 -EDFC---AFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp -TTSC---EECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCSSCTT
T ss_pred -HHHh---hccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECcCCcCC
Confidence 2222 3344 6666666665552 343333332 2555555555544
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.4e-18 Score=162.07 Aligned_cols=182 Identities=19% Similarity=0.200 Sum_probs=87.2
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCch
Q 012515 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (462)
.++++|++++|.+....... +..+++|++|++++|.++......+ ..+++|++|++++|.+...
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~i~~~~~--------~~l~~L~~L~l~~n~l~~~---- 100 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKA----FHRLTKLRLLYLNDNKLQTLPAGIF--------KELKNLETLWVTDNKLQAL---- 100 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTS----SSSCTTCCEEECCSSCCSCCCTTTT--------SSCTTCCEEECCSSCCCCC----
T ss_pred CCCCEEECcCCCCCeeCHHH----hcCCCCCCEEECCCCccCeeChhhh--------cCCCCCCEEECCCCcCCcC----
Confidence 34566666665543322111 2345566666666665542211111 1145566666666655541
Q ss_pred hHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCcc
Q 012515 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (462)
Q Consensus 277 ~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~ 356 (462)
....+..+++|++|++++|.+....+.. +..+++|++|++++|.+++..+ ..+ ..+++|+
T Consensus 101 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~--------~~~---~~l~~L~ 160 (270)
T 2o6q_A 101 ----PIGVFDQLVNLAELRLDRNQLKSLPPRV-----FDSLTKLTYLSLGYNELQSLPK--------GVF---DKLTSLK 160 (270)
T ss_dssp ----CTTTTTTCSSCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------TTT---TTCTTCC
T ss_pred ----CHhHcccccCCCEEECCCCccCeeCHHH-----hCcCcCCCEEECCCCcCCccCH--------hHc---cCCcccc
Confidence 1223444556666666666555433221 1334556666666665553211 111 2345566
Q ss_pred EEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCC
Q 012515 357 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426 (462)
Q Consensus 357 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~ 426 (462)
.|+|++|+++.. .+.++..+++|++|++++|.|+. ++. ..+..+++|+.|++++|++.
T Consensus 161 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 161 ELRLYNNQLKRV----PEGAFDKLTELKTLKLDNNQLKR------VPE--GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp EEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCBC
T ss_pred eeEecCCcCcEe----ChhHhccCCCcCEEECCCCcCCc------CCH--HHhccccCCCEEEecCCCee
Confidence 666666655541 11234555566666666665554 221 23444555666666666543
No 63
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.71 E-value=9e-17 Score=139.73 Aligned_cols=134 Identities=12% Similarity=0.160 Sum_probs=75.8
Q ss_pred HHHHHhhcCCCCCCEEecCCC-CCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccE
Q 012515 279 VELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (462)
Q Consensus 279 ~~l~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~ 357 (462)
+.+...+...+.|++|+|++| .|++.+...++++|..+ +.|++|+|++|.++ +.++..++..|... ++|++
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~ig----d~ga~alA~aL~~N---~tL~~ 102 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAIS----DSEARGLIELIETS---PSLRV 102 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCB----HHHHTTHHHHHHHC---SSCCE
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCC----hHHHHHHHHHHhcC---CccCe
Confidence 467777777888999999885 88888888888887544 55555555555555 23444444444422 34555
Q ss_pred EEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCC---CCCchhHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012515 358 LNLRGNNLCKADARDLGSALVHIPNLEILDISDN---TIEDDGIRSLIPYFVQASERCNPLVELYLENCE 424 (462)
Q Consensus 358 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N---~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 424 (462)
|+|++|.|+++|+.+|..++..+++|++|+|++| .+++.|..++.. .+..+++|.+|+++.|.
T Consensus 103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~----aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM----AIEENESLLRVGISFAS 168 (197)
T ss_dssp EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH----HHHHCSSCCEEECCCCC
T ss_pred EecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH----HHHhCCCcCeEeccCCC
Confidence 5555555555555555555555555555555432 344444444442 23333445555554443
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=9e-17 Score=161.93 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=47.7
Q ss_pred hhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCC
Q 012515 193 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 272 (462)
Q Consensus 193 l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~ 272 (462)
+.++++|++|++++|.+..... ...+++|++|++++|.+....+ + . .+.+|++|++++|.+...
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~--~----~----~l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISV------LAKLTNLESLIATNNQISDITP--L----G----ILTNLDELSLNGNQLKDI 236 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEECCSSCCCCCGG--G----G----GCTTCCEEECCSSCCCCC
T ss_pred hccCCCCCEEECcCCcCCCChh------hccCCCCCEEEecCCccccccc--c----c----ccCCCCEEECCCCCcccc
Confidence 4445555555555555332210 2335555555555555543222 0 0 144455555555554431
Q ss_pred CCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCC
Q 012515 273 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (462)
Q Consensus 273 ~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 331 (462)
..+..+++|++|++++|.+.+..+ ...+++|++|++++|.++
T Consensus 237 ----------~~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 237 ----------GTLASLTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp ----------GGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCC
T ss_pred ----------hhhhcCCCCCEEECCCCccccchh-------hhcCCCCCEEECCCCccC
Confidence 123344555555555555444222 123344555555555544
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.1e-18 Score=174.58 Aligned_cols=212 Identities=17% Similarity=0.105 Sum_probs=165.3
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012515 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.++.+++.++.....+. +..+++|++|+|++|.+.... ..++|++|++++|.++.....
T Consensus 59 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---------~~~~L~~L~L~~N~l~~~~~~----------- 117 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---------VGPSIETLHAANNNISRVSCS----------- 117 (487)
T ss_dssp TCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---------ECTTCCEEECCSSCCCCEEEC-----------
T ss_pred CCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---------CCCCcCEEECcCCcCCCCCcc-----------
Confidence 45677777776654443 778899999999999876422 358999999999999854321
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcc
Q 012515 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 334 (462)
.+++|++|++++|.+.. ..+..+..+++|++|+|++|.+++..+..+ ...+++|++|+|++|.+++..
T Consensus 118 ~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 118 RGQGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp CCSSCEEEECCSSCCCS--------GGGBCGGGGSSEEEEECTTSCCCEEEGGGG----GGGTTTCCEEECTTSCCCEEE
T ss_pred ccCCCCEEECCCCCCCC--------CCchhhcCCCCCCEEECCCCCCCCcChHHH----hhhCCcccEEecCCCcccccc
Confidence 16789999999999987 345567788999999999999998766554 234689999999999998631
Q ss_pred cccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC
Q 012515 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 335 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
+ ...+++|+.|+|++|++++ +++.+..+++|+.|++++|.|+. +| ..+..+++
T Consensus 186 ~-------------~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~------lp---~~l~~l~~ 238 (487)
T 3oja_A 186 G-------------QVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL------IE---KALRFSQN 238 (487)
T ss_dssp C-------------CCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE------EC---TTCCCCTT
T ss_pred c-------------cccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCcc------cc---hhhccCCC
Confidence 1 2246899999999999996 66778899999999999999996 55 56778899
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEcc
Q 012515 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIA 450 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls 450 (462)
|+.|++++|+++... ++..+.. .+.|+.++++
T Consensus 239 L~~L~l~~N~l~c~~---~~~~~~~-l~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHCGT---LRDFFSK-NQRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCHHH---HHHHHTT-CHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcc---hHHHHHh-CCCCcEEecc
Confidence 999999999998432 4445554 3346666665
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=170.03 Aligned_cols=228 Identities=18% Similarity=0.176 Sum_probs=159.4
Q ss_pred ccceeeeccccch-Hhhhhh-----hcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHH
Q 012515 175 YARCLRLQNALCV-EETCQL-----LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRS 248 (462)
Q Consensus 175 ~~~~l~l~~~~~~-~~~~~l-----~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 248 (462)
.++.+++.++... .++..+ .++++|+.+++++|.+ .........+.. ..+|++|++++|.+.....
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~------ 319 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLC------ 319 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHH-TCCCSEEEEESSCCCCCCC------
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccc-cCceeEEEcCCCccccccc------
Confidence 3455566655544 344444 5667777777777765 111011111122 2578888888887764321
Q ss_pred HhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCCh--hhHHHHHHHHhhCCCCccEEEec
Q 012515 249 LCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLS 326 (462)
Q Consensus 249 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls 326 (462)
...+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+ ..+.. +..+++|++|+++
T Consensus 320 ----~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-----~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 320 ----PSKISPFLHLDFSNNLLTD--------TVFENCGHLTELETLILQMNQLKELSKIAEM-----TTQMKSLQQLDIS 382 (520)
T ss_dssp ----CSSCCCCCEEECCSSCCCT--------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHH-----HTTCTTCCEEECC
T ss_pred ----hhhCCcccEEEeECCccCh--------hhhhhhccCCCCCEEEccCCccCccccchHH-----HhhCCCCCEEECC
Confidence 0127889999999999887 455667889999999999999986 22232 3557999999999
Q ss_pred CCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHH
Q 012515 327 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV 406 (462)
Q Consensus 327 ~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~ 406 (462)
+|.+++.+| . ..+..+++|++|++++|++++. ++..+. ++|+.|++++|.|+. +|
T Consensus 383 ~N~l~~~l~--------~--~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~--~~L~~L~Ls~N~l~~------ip--- 437 (520)
T 2z7x_B 383 QNSVSYDEK--------K--GDCSWTKSLLSLNMSSNILTDT----IFRCLP--PRIKVLDLHSNKIKS------IP--- 437 (520)
T ss_dssp SSCCBCCGG--------G--CSCCCCTTCCEEECCSSCCCGG----GGGSCC--TTCCEEECCSSCCCC------CC---
T ss_pred CCcCCcccc--------c--chhccCccCCEEECcCCCCCcc----hhhhhc--ccCCEEECCCCcccc------cc---
Confidence 999986443 2 1233668999999999999863 333332 689999999999985 65
Q ss_pred hhcCCCCCccEEEccCCCCChhhHHHHHHH-HhcCCCCCcEEEccCCCCCCcc
Q 012515 407 QASERCNPLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 407 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
..+..+++|+.|++++|+++. ++.. +.. .++|++|++++|++....
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~-l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKS-----VPDGIFDR-LTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-----CCTTTTTT-CTTCCEEECCSSCBCCCH
T ss_pred hhhhcCCCCCEEECCCCcCCc-----cCHHHhcc-CCcccEEECcCCCCcccC
Confidence 445578999999999999987 4443 555 356999999999997653
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=3.4e-16 Score=162.44 Aligned_cols=223 Identities=16% Similarity=0.142 Sum_probs=152.9
Q ss_pred hhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCC------
Q 012515 193 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDI------ 266 (462)
Q Consensus 193 l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~------ 266 (462)
+..+++|++|++++|.+.... ...+...+++|++|++++| +++.+...+... +++|++|++++
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~-------~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST-------CKDLRELRVFPSEPFVM 353 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH-------CTTCCEEEEECSCTTCS
T ss_pred HHhhCCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh-------CCCCCEEEEecCccccc
Confidence 336688999999988855332 2233557889999999988 666666655543 67899998833
Q ss_pred ---CCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEec--C----CCCCCccccc
Q 012515 267 ---SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS--G----NSIGGWLSKY 337 (462)
Q Consensus 267 ---~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls--~----n~l~~~~~~~ 337 (462)
+.+++ ..+......+++|++|.++.|.+++.++..++. .+++|++|+++ + +.+++. .
T Consensus 354 ~~~~~l~~-------~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~----~~~~L~~L~L~~~~~~~~~~l~~~---~ 419 (594)
T 2p1m_B 354 EPNVALTE-------QGLVSVSMGCPKLESVLYFCRQMTNAALITIAR----NRPNMTRFRLCIIEPKAPDYLTLE---P 419 (594)
T ss_dssp SCSSCCCH-------HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH----HCTTCCEEEEEESSTTCCCTTTCC---C
T ss_pred ccCCCCCH-------HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh----hCCCcceeEeecccCCCcccccCC---c
Confidence 34443 234444445789999988888998888777754 25789999998 3 445421 0
Q ss_pred CcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccE
Q 012515 338 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 417 (462)
Q Consensus 338 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~ 417 (462)
..+.+...+. ++++|+.|+|++ .+++.++..+.. .+++|+.|++++|.+++.|+..++. .+++|+.
T Consensus 420 ~~~~~~~l~~---~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~~-------~~~~L~~ 485 (594)
T 2p1m_B 420 LDIGFGAIVE---HCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS-------GCDSLRK 485 (594)
T ss_dssp THHHHHHHHH---HCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHHH-------HCTTCCE
T ss_pred hhhHHHHHHh---hCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHHh-------cCCCcCE
Confidence 0122333344 457889999977 788866554433 4778999999999998887766642 2478999
Q ss_pred EEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012515 418 LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 418 L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
|++++|++++.+...+...+. +|++|++++|++++++
T Consensus 486 L~L~~n~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 486 LEIRDCPFGDKALLANASKLE----TMRSLWMSSCSVSFGA 522 (594)
T ss_dssp EEEESCSCCHHHHHHTGGGGG----GSSEEEEESSCCBHHH
T ss_pred EECcCCCCcHHHHHHHHHhCC----CCCEEeeeCCCCCHHH
Confidence 999999988776655544333 4899999999886544
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=3.7e-18 Score=159.75 Aligned_cols=220 Identities=15% Similarity=0.124 Sum_probs=160.2
Q ss_pred cccceeeeccccchHhhh-hhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 012515 174 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (462)
Q Consensus 174 ~~~~~l~l~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~ 252 (462)
..++.+++.++....++. .+.++++|++|++++|.+....... +..+++|++|++++|.++...+..+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG----- 98 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT-----
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcC-----
Confidence 356778888887766554 5678899999999999876443221 356899999999999998654443322
Q ss_pred cccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhh-HHHHHHHHhhCCCCccEEEecCCCCC
Q 012515 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF-GRMVFSSLLEASSSLSILDLSGNSIG 331 (462)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~ 331 (462)
+.+|++|++++|.+.... ...+..+++|++|++++|.+.... +.. +..+++|++|++++|.++
T Consensus 99 ---l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~l~~~-----~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 99 ---LSSLQKLVAVETNLASLE--------NFPIGHLKTLKELNVAHNLIQSFKLPEY-----FSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp ---CTTCCEEECTTSCCCCST--------TCCCTTCTTCCEEECCSSCCCCCCCCGG-----GGGCTTCCEEECCSSCCC
T ss_pred ---CccccEEECCCCCccccC--------chhcccCCCCCEEECcCCccceecCchh-----hccCCCCCEEECCCCCCC
Confidence 789999999999988722 224678899999999999997633 333 245789999999999998
Q ss_pred CcccccCcccHHHhhhCCCCCCCcc-EEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcC
Q 012515 332 GWLSKYDRSGPLFSLGAGKSLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 410 (462)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~ 410 (462)
+..+ ..+..+..+..|. .|++++|.++. +++......+|++|++++|.++. ++. ..+.
T Consensus 163 ~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~-----~~~~~~~~~~L~~L~L~~n~l~~------~~~--~~~~ 221 (276)
T 2z62_A 163 SIYC--------TDLRVLHQMPLLNLSLDLSLNPMNF-----IQPGAFKEIRLKELALDTNQLKS------VPD--GIFD 221 (276)
T ss_dssp EECG--------GGGHHHHTCTTCCEEEECCSSCCCE-----ECTTSSCSCCEEEEECCSSCCSC------CCT--TTTT
T ss_pred cCCH--------HHhhhhhhccccceeeecCCCcccc-----cCccccCCCcccEEECCCCceee------cCH--hHhc
Confidence 6333 2333222334444 89999999996 44445556689999999999986 432 4567
Q ss_pred CCCCccEEEccCCCCChhh--HHHHHHHHhc
Q 012515 411 RCNPLVELYLENCELSGRG--VSQLLDTLST 439 (462)
Q Consensus 411 ~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~ 439 (462)
.+++|+.|++++|+++... ...+...+..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~ 252 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 252 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred ccccccEEEccCCcccccCCchHHHHHHHHh
Confidence 7899999999999988643 2334444433
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=2.3e-18 Score=177.96 Aligned_cols=228 Identities=18% Similarity=0.163 Sum_probs=160.9
Q ss_pred ceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhH--HHHHHHHHhcccc
Q 012515 177 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKRK 254 (462)
Q Consensus 177 ~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~--~~~l~~~l~~~~~ 254 (462)
+.+.+.++....++. ..+++|++|++++|....... ...+++|++|++++|.++... +..+..
T Consensus 307 ~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~------- 371 (570)
T 2z63_A 307 QHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFG------- 371 (570)
T ss_dssp SEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEECCSSCCBEEEEEEHHHHT-------
T ss_pred cEEeeccCcccccCc--ccccccCEEeCcCCccccccc------cccCCCCCEEeCcCCccCccccccccccc-------
Confidence 444455444432222 345667777777666433221 135788888888888887543 233322
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcc
Q 012515 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 334 (462)
+++|++|++++|.+.. +...+..+++|++|++++|.+.+..+... +..+++|++|++++|.+.+..
T Consensus 372 -~~~L~~L~l~~n~l~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 372 -TTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV----FLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp -CSCCCEEECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESCTTSCT----TTTCTTCCEEECTTSCCEECC
T ss_pred -cCccCEEECCCCcccc---------ccccccccCCCCEEEccCCccccccchhh----hhcCCCCCEEeCcCCcccccc
Confidence 6889999999988766 22236778899999999998776433211 345789999999999887643
Q ss_pred cccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC
Q 012515 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 335 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
+ ..+. ++++|++|++++|.+++. .++..+..+++|++|++++|.+++. .| ..+..+++
T Consensus 438 ~--------~~~~---~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~~ 495 (570)
T 2z63_A 438 N--------GIFN---GLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL-----SP---TAFNSLSS 495 (570)
T ss_dssp T--------TTTT---TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTCTT
T ss_pred h--------hhhh---cCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccC-----Ch---hhhhcccC
Confidence 3 3333 678999999999998742 2567788999999999999999872 23 56778899
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcccc
Q 012515 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 460 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~~ 460 (462)
|+.|++++|+++.. .+..+.. .++|++|++++|++++..+.
T Consensus 496 L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQLKSV----PDGIFDR-LTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSCCSCC----CTTTTTT-CTTCCEEECCSSCBCCCTTT
T ss_pred CCEEeCCCCcCCCC----CHHHhhc-ccCCcEEEecCCcccCCCcc
Confidence 99999999999884 2344556 45699999999999887653
No 70
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=4.6e-17 Score=171.94 Aligned_cols=239 Identities=21% Similarity=0.122 Sum_probs=165.3
Q ss_pred cccceeeeccccchHhhh-hhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 012515 174 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (462)
Q Consensus 174 ~~~~~l~l~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~ 252 (462)
..++.+++.++....++. .+.++++|++|++++|.+....... +.++++|++|+|++|.++......+.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~------ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFA------ 94 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTCCEEECCSSCCCCCCTTTTT------
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCcCEEECCCCccCccChhhhc------
Confidence 466777888777666554 4667888899999888765443222 34578889999988887743332222
Q ss_pred cccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCC
Q 012515 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (462)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 332 (462)
.+.+|++|++++|.+... ....+..+++|++|++++|.+....+.. +..+++|++|++++|.+++
T Consensus 95 --~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 95 --FCTNLTELHLMSNSIQKI--------KNNPFVKQKNLITLDLSHNGLSSTKLGT-----QVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp --TCTTCSEEECCSSCCCCC--------CSCTTTTCTTCCEEECCSSCCSCCCCCS-----SSCCTTCCEEECCSSCCCC
T ss_pred --cCCCCCEEECCCCccCcc--------ChhHccccCCCCEEECCCCcccccCchh-----hcccccCCEEEccCCcccc
Confidence 278888999988888662 2245677888899999888887654433 2456888899998888876
Q ss_pred cccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCC
Q 012515 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 412 (462)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~ 412 (462)
..+ ..+... .+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.......+... + ..
T Consensus 160 ~~~--------~~~~~~-~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~----l-~~ 221 (680)
T 1ziw_A 160 LKS--------EELDIF-ANSSLKKLELSSNQIKEF----SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE----L-AN 221 (680)
T ss_dssp BCH--------HHHGGG-TTCEESEEECTTCCCCCB----CTTGGGGSSEECEEECTTCCCHHHHHHHHHHH----H-TT
T ss_pred cCH--------HHhhcc-ccccccEEECCCCccccc----ChhhhhhhhhhhhhhccccccChhhHHHHHHH----h-hh
Confidence 433 222211 346888899999888862 34567788888889998888877665555432 2 23
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHhcCC-CCCcEEEccCCCCCCccc
Q 012515 413 NPLVELYLENCELSGRGVSQLLDTLSTLR-RPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 413 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~-~~L~~L~Ls~N~l~~~~~ 459 (462)
++|+.|++++|.++... +..+..+. ++|++|++++|.+++..+
T Consensus 222 ~~L~~L~L~~n~l~~~~----~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTS----NTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp SCCCEEECTTSCCCEEC----TTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred ccccEEEccCCcccccC----hhHhhccCcCCCCEEECCCCCcCccCc
Confidence 78999999999988752 22333321 349999999999987654
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=2.1e-18 Score=165.95 Aligned_cols=228 Identities=20% Similarity=0.139 Sum_probs=138.3
Q ss_pred cceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccc
Q 012515 176 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 255 (462)
Q Consensus 176 ~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~ 255 (462)
++.+++.++....++..+. ++|++|++++|.+....... +..+++|++|++++|.++..+... .....
T Consensus 104 L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~------~~~~~ 171 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGV----FSGLRNMNCIEMGGNPLENSGFEP------GAFDG 171 (332)
T ss_dssp CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGG----GSSCSSCCEEECCSCCCBGGGSCT------TSSCS
T ss_pred CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhH----hCCCccCCEEECCCCccccCCCCc------ccccC
Confidence 3445555544443333332 45666666655543322111 234566666666666554311100 00000
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012515 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
+ +|++|++++|.+..... .+ .++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+
T Consensus 172 l-~L~~L~l~~n~l~~l~~---------~~--~~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGIPK---------DL--PETLNELHLDHNKIQAIELEDL-----LRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp C-CCSCCBCCSSBCSSCCS---------SS--CSSCSCCBCCSSCCCCCCTTSS-----TTCTTCSCCBCCSSCCCCCCT
T ss_pred C-ccCEEECcCCCCCccCc---------cc--cCCCCEEECCCCcCCccCHHHh-----cCCCCCCEEECCCCcCCcCCh
Confidence 2 56666666666554211 11 2588899999998887554433 456899999999999986433
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCc
Q 012515 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 415 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 415 (462)
..+. .+++|+.|+|++|+++. ++..+..+++|+.|++++|.|++.+...+.+. ........|
T Consensus 235 --------~~~~---~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~~~~~~~l 296 (332)
T 2ft3_A 235 --------GSLS---FLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV--GFGVKRAYY 296 (332)
T ss_dssp --------TGGG---GCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS--SCCSSSCCB
T ss_pred --------hHhh---CCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHcccc--ccccccccc
Confidence 3344 56899999999999995 77889999999999999999998443333210 000114679
Q ss_pred cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCC
Q 012515 416 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 453 (462)
Q Consensus 416 ~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~ 453 (462)
+.|++++|+++..++ .+.++.. .+.|+.+++++|+
T Consensus 297 ~~L~l~~N~~~~~~~--~~~~~~~-l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 297 NGISLFNNPVPYWEV--QPATFRC-VTDRLAIQFGNYK 331 (332)
T ss_dssp SEEECCSSSSCGGGS--CGGGGTT-BCCSTTEEC----
T ss_pred cceEeecCccccccc--Ccccccc-cchhhhhhccccc
Confidence 999999999884322 2345666 4669999999885
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=8.7e-18 Score=156.74 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=146.4
Q ss_pred CcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchh
Q 012515 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (462)
Q Consensus 198 ~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (462)
..+.++++++.+...... -.+++++|+|++|.++......+ ..+.+|++|++++|.+...
T Consensus 17 ~~~~l~~~~~~l~~ip~~-------~~~~l~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~i----- 76 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-------IPADTKKLDLQSNKLSSLPSKAF--------HRLTKLRLLYLNDNKLQTL----- 76 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-------CCTTCSEEECCSSCCSCCCTTSS--------SSCTTCCEEECCSSCCSCC-----
T ss_pred CCCEEEccCCCCCccCCC-------CCCCCCEEECcCCCCCeeCHHHh--------cCCCCCCEEECCCCccCee-----
Confidence 357788888776543221 13579999999998875433222 2278899999999988762
Q ss_pred HHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccE
Q 012515 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (462)
Q Consensus 278 ~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~ 357 (462)
....+..+++|++|++++|.+....... +..+++|++|++++|.+++..+ ..+ .++++|++
T Consensus 77 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--------~~~---~~l~~L~~ 137 (270)
T 2o6q_A 77 ---PAGIFKELKNLETLWVTDNKLQALPIGV-----FDQLVNLAELRLDRNQLKSLPP--------RVF---DSLTKLTY 137 (270)
T ss_dssp ---CTTTTSSCTTCCEEECCSSCCCCCCTTT-----TTTCSSCCEEECCSSCCCCCCT--------TTT---TTCTTCCE
T ss_pred ---ChhhhcCCCCCCEEECCCCcCCcCCHhH-----cccccCCCEEECCCCccCeeCH--------HHh---CcCcCCCE
Confidence 2344567889999999999988644322 3456889999999999886433 223 36689999
Q ss_pred EEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHH
Q 012515 358 LNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 436 (462)
Q Consensus 358 L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 436 (462)
|+|++|+++. ++. .+..+++|++|++++|.|+. ++. ..+..+++|+.|++++|+++... ...
T Consensus 138 L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~~----~~~ 200 (270)
T 2o6q_A 138 LSLGYNELQS-----LPKGVFDKLTSLKELRLYNNQLKR------VPE--GAFDKLTELKTLKLDNNQLKRVP----EGA 200 (270)
T ss_dssp EECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCCSCCC----TTT
T ss_pred EECCCCcCCc-----cCHhHccCCcccceeEecCCcCcE------eCh--hHhccCCCcCEEECCCCcCCcCC----HHH
Confidence 9999999986 333 47888999999999999886 332 44677789999999999988731 223
Q ss_pred HhcCCCCCcEEEccCCCCCC
Q 012515 437 LSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 437 l~~l~~~L~~L~Ls~N~l~~ 456 (462)
+.. .++|+.|++++|++..
T Consensus 201 ~~~-l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 201 FDS-LEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTT-CTTCCEEECCSSCBCC
T ss_pred hcc-ccCCCEEEecCCCeeC
Confidence 555 3569999999998754
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=7.6e-17 Score=161.66 Aligned_cols=182 Identities=19% Similarity=0.080 Sum_probs=96.7
Q ss_pred cceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccc
Q 012515 176 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 255 (462)
Q Consensus 176 ~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~ 255 (462)
++.+++.++....++ +..+++|++|++++|.+.... +..+++|++|++++|.++... ...
T Consensus 66 L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~L~~L~L~~N~l~~l~-----------~~~ 125 (457)
T 3bz5_A 66 LTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-------VTPLTKLTYLNCDTNKLTKLD-----------VSQ 125 (457)
T ss_dssp CSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECCSSCCSCCC-----------CTT
T ss_pred CCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-------cCCCCcCCEEECCCCcCCeec-----------CCC
Confidence 344444444444331 445556666666665544321 234556666666666555321 111
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012515 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
+++|++|++++|.+... .+..+++|++|++++|...... . ...+++|++|++++|.+++
T Consensus 126 l~~L~~L~l~~N~l~~l-----------~l~~l~~L~~L~l~~n~~~~~~--~-----~~~l~~L~~L~ls~n~l~~--- 184 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEI-----------DVSHNTQLTELDCHLNKKITKL--D-----VTPQTQLTTLDCSFNKITE--- 184 (457)
T ss_dssp CTTCCEEECTTSCCSCC-----------CCTTCTTCCEEECTTCSCCCCC--C-----CTTCTTCCEEECCSSCCCC---
T ss_pred CCcCCEEECCCCcccee-----------ccccCCcCCEEECCCCCccccc--c-----cccCCcCCEEECCCCccce---
Confidence 45566666666665541 1345556666666666322211 0 2334566666666666654
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCc
Q 012515 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 415 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 415 (462)
++ +..+++|+.|++++|++++. .+..+++|+.|++++|.+++ +| +..+++|
T Consensus 185 ------l~-----l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~------ip-----~~~l~~L 235 (457)
T 3bz5_A 185 ------LD-----VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE------ID-----VTPLTQL 235 (457)
T ss_dssp ------CC-----CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC------CC-----CTTCTTC
T ss_pred ------ec-----cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc------cC-----ccccCCC
Confidence 10 22445666666666666652 25566667777777776665 32 3455667
Q ss_pred cEEEccCCCCCh
Q 012515 416 VELYLENCELSG 427 (462)
Q Consensus 416 ~~L~L~~n~l~~ 427 (462)
+.|++++|+++.
T Consensus 236 ~~L~l~~N~l~~ 247 (457)
T 3bz5_A 236 TYFDCSVNPLTE 247 (457)
T ss_dssp SEEECCSSCCSC
T ss_pred CEEEeeCCcCCC
Confidence 777777776665
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.68 E-value=1.7e-16 Score=159.82 Aligned_cols=212 Identities=17% Similarity=0.187 Sum_probs=167.7
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012515 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.++.+++.++..... ..+..+++|++|++++|.+..... ...+++|++|++++|.+++.. .+.
T Consensus 178 ~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~------~l~---- 240 (466)
T 1o6v_A 178 TLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIG------TLA---- 240 (466)
T ss_dssp TCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCG------GGG----
T ss_pred CCCEEECcCCcCCCC-hhhccCCCCCEEEecCCccccccc------ccccCCCCEEECCCCCcccch------hhh----
Confidence 456777777766543 347788999999999998765432 346899999999999988641 122
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcc
Q 012515 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 334 (462)
.+++|++|++++|.+... .. +..+++|++|++++|.+.+..+ ...+++|++|++++|.+++..
T Consensus 241 ~l~~L~~L~l~~n~l~~~---------~~-~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNL---------AP-LSGLTKLTELKLGANQISNISP-------LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp GCTTCSEEECCSSCCCCC---------GG-GTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCSCCG
T ss_pred cCCCCCEEECCCCccccc---------hh-hhcCCCCCEEECCCCccCcccc-------ccCCCccCeEEcCCCcccCch
Confidence 278999999999998772 11 6788999999999999987443 245799999999999998622
Q ss_pred cccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC
Q 012515 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 335 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
+ +. .+++|+.|++++|++++. .+ +..+++|+.|++++|.+++ + ..+..+++
T Consensus 304 ~----------~~---~l~~L~~L~L~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~------~----~~l~~l~~ 354 (466)
T 1o6v_A 304 P----------IS---NLKNLTYLTLYFNNISDI-----SP-VSSLTKLQRLFFYNNKVSD------V----SSLANLTN 354 (466)
T ss_dssp G----------GG---GCTTCSEEECCSSCCSCC-----GG-GGGCTTCCEEECCSSCCCC------C----GGGTTCTT
T ss_pred h----------hc---CCCCCCEEECcCCcCCCc-----hh-hccCccCCEeECCCCccCC------c----hhhccCCC
Confidence 1 33 568999999999999973 22 7889999999999999987 4 34677899
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012515 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
|+.|++++|++++.. + +.. .++|+.|++++|.+++
T Consensus 355 L~~L~l~~n~l~~~~----~--~~~-l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQISDLT----P--LAN-LTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCBCG----G--GTT-CTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCccCccc----h--hhc-CCCCCEEeccCCcccC
Confidence 999999999999852 2 566 4569999999998877
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=7.7e-17 Score=153.23 Aligned_cols=189 Identities=17% Similarity=0.211 Sum_probs=147.3
Q ss_pred cceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccc
Q 012515 176 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 255 (462)
Q Consensus 176 ~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~ 255 (462)
++.+.+.++....++ .+..+++|++|++++|.+..... ...+++|++|++++|.++... . + ..
T Consensus 43 L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~--~----~----~~ 105 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS--A----I----AG 105 (308)
T ss_dssp CCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG--G----G----TT
T ss_pred cCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch--h----h----cC
Confidence 344455555444333 46678999999999998765432 356899999999999988632 1 2 22
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012515 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
+.+|++|++++|.+.. +. .+..+++|++|++++|.+.+... ...+++|++|++++|.+++.
T Consensus 106 l~~L~~L~l~~n~l~~---------~~-~l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~-- 166 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITD---------VT-PLAGLSNLQVLYLDLNQITNISP-------LAGLTNLQYLSIGNAQVSDL-- 166 (308)
T ss_dssp CTTCCEEECTTSCCCC---------CG-GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC--
T ss_pred CCCCCEEECCCCCCCC---------ch-hhcCCCCCCEEECCCCccCcCcc-------ccCCCCccEEEccCCcCCCC--
Confidence 7899999999999877 22 27889999999999999987443 24578999999999999862
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCc
Q 012515 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 415 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 415 (462)
+. +. .+++|+.|++++|++++ +++ +..+++|++|++++|.+++ ++ .+..+++|
T Consensus 167 -------~~-l~---~l~~L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~L~~N~l~~------~~----~l~~l~~L 219 (308)
T 1h6u_A 167 -------TP-LA---NLSKLTTLKADDNKISD-----ISP-LASLPNLIEVHLKNNQISD------VS----PLANTSNL 219 (308)
T ss_dssp -------GG-GT---TCTTCCEEECCSSCCCC-----CGG-GGGCTTCCEEECTTSCCCB------CG----GGTTCTTC
T ss_pred -------hh-hc---CCCCCCEEECCCCccCc-----Chh-hcCCCCCCEEEccCCccCc------cc----cccCCCCC
Confidence 12 33 66899999999999997 333 8899999999999999997 43 35778999
Q ss_pred cEEEccCCCCCh
Q 012515 416 VELYLENCELSG 427 (462)
Q Consensus 416 ~~L~L~~n~l~~ 427 (462)
+.|++++|+++.
T Consensus 220 ~~L~l~~N~i~~ 231 (308)
T 1h6u_A 220 FIVTLTNQTITN 231 (308)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEEccCCeeec
Confidence 999999999876
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=1.9e-17 Score=174.88 Aligned_cols=234 Identities=15% Similarity=0.074 Sum_probs=145.0
Q ss_pred ccceeeeccccchHh-hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 175 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
.++.+++.++..... +..+.++++|++|++++|.+....... +.++++|++|++++|.++...+..+.
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~------- 118 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNNPFV------- 118 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCSCTTT-------
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh----hccCCCCCEEECCCCccCccChhHcc-------
Confidence 456677777666554 445678999999999999876433221 35689999999999988754333332
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 333 (462)
.+.+|++|++++|.+.. .....+..+++|++|++++|.+....+..+.. ...++|++|++++|.+++.
T Consensus 119 -~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 119 -KQKNLITLDLSHNGLSS--------TKLGTQVQLENLQELLLSNNKIQALKSEELDI---FANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp -TCTTCCEEECCSSCCSC--------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG---GTTCEESEEECTTCCCCCB
T ss_pred -ccCCCCEEECCCCcccc--------cCchhhcccccCCEEEccCCcccccCHHHhhc---cccccccEEECCCCccccc
Confidence 27899999999999877 23345677899999999999998765554421 2347899999999999865
Q ss_pred ccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH-----------------------HhhcCC--CCCEEeC
Q 012515 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-----------------------ALVHIP--NLEILDI 388 (462)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----------------------~l~~~~--~L~~L~L 388 (462)
.+ ..+. .+.+|+.|++++|.++......++. .+..++ +|++|++
T Consensus 187 ~~--------~~~~---~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 187 SP--------GCFH---AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp CT--------TGGG---GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred Ch--------hhhh---hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 44 2222 2234444444444444333333332 333332 3666666
Q ss_pred CCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 389 SDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 389 s~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
++|.++.. .+ ..+..+++|+.|++++|+++.. .+..+.. .++|++|++++|..+
T Consensus 256 s~n~l~~~-----~~---~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 256 SYNNLNVV-----GN---DSFAWLPQLEYFFLEYNNIQHL----FSHSLHG-LFNVRYLNLKRSFTK 309 (680)
T ss_dssp TTSCCCEE-----CT---TTTTTCTTCCEEECCSCCBSEE----CTTTTTT-CTTCCEEECTTCBCC
T ss_pred CCCCcCcc-----Cc---ccccCcccccEeeCCCCccCcc----ChhhhcC-CCCccEEeccchhhh
Confidence 66655541 11 3344555666666666665543 2233444 234666666655443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=4.2e-17 Score=152.22 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=143.8
Q ss_pred cCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCC
Q 012515 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (462)
Q Consensus 223 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~ 302 (462)
.+++|++|++++|.+.... . +.. +++|++|++++|.+.. + ..+..+++|++|++++|.++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~--~----l~~----l~~L~~L~l~~n~l~~---------~-~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ--G----IQY----LPNVRYLALGGNKLHD---------I-SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT--T----GGG----CTTCCEEECTTSCCCC---------C-GGGTTCTTCCEEECTTSCCC
T ss_pred cccceeeeeeCCCCccccc--c----ccc----CCCCcEEECCCCCCCC---------c-hhhcCCCCCCEEECCCCccC
Confidence 3679999999999887432 1 222 7899999999999876 2 35778899999999999998
Q ss_pred hhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCC
Q 012515 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 382 (462)
Q Consensus 303 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 382 (462)
+..+.. +..+++|++|++++|.+++..+ ..+. .+++|++|++++|+++.. .+..+..+++
T Consensus 99 ~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~--------~~~~---~l~~L~~L~L~~n~l~~~----~~~~~~~l~~ 158 (272)
T 3rfs_A 99 SLPNGV-----FDKLTNLKELVLVENQLQSLPD--------GVFD---KLTNLTYLNLAHNQLQSL----PKGVFDKLTN 158 (272)
T ss_dssp CCCTTT-----TTTCTTCCEEECTTSCCCCCCT--------TTTT---TCTTCCEEECCSSCCCCC----CTTTTTTCTT
T ss_pred ccChhH-----hcCCcCCCEEECCCCcCCccCH--------HHhc---cCCCCCEEECCCCccCcc----CHHHhccCcc
Confidence 744432 3457899999999999986433 2233 668999999999999962 2345788999
Q ss_pred CCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 383 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 383 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
|++|++++|.+++ ++. ..+..+++|+.|++++|+++.. .+..+.. .++|++|++++|++.+..+
T Consensus 159 L~~L~l~~n~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 159 LTELDLSYNQLQS------LPE--GVFDKLTQLKDLRLYQNQLKSV----PDGVFDR-LTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCCcCc------cCH--HHhcCCccCCEEECCCCcCCcc----CHHHHhC-CcCCCEEEccCCCccccCc
Confidence 9999999999986 332 4467889999999999999874 2334555 4569999999999987665
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=2.4e-17 Score=170.06 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=35.4
Q ss_pred CCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012515 351 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
.+++|++|++++|++++ .++..+..+++|+.|++++|.+++ ++.+...+..+++|+.|++++|+++.
T Consensus 351 ~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTD----SVFQGCSTLKRLQTLILQRNGLKN------FFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SCCCCCEEECCSSCCCT----TTTTTCCSCSSCCEEECCSSCCCB------TTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCCCceEEECCCCcccc----chhhhhcccCCCCEEECCCCCcCC------cccchhhhcCCCCCCEEECCCCcCCC
Confidence 44566666666666665 244455556666666666666554 21111334444555555555555443
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=1.4e-17 Score=171.78 Aligned_cols=247 Identities=16% Similarity=0.091 Sum_probs=163.8
Q ss_pred cccceeeeccccchHhh-hhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 012515 174 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (462)
Q Consensus 174 ~~~~~l~l~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~ 252 (462)
..++.+++.++....++ ..+.++++|++|++++|.+....... +.++++|++|+|++|.++.....
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~lp~~--------- 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQNISCC--------- 118 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCCEECSC---------
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCCccCcc---------
Confidence 45677788888777655 46778899999999999876543222 35689999999999998732211
Q ss_pred cccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCC--
Q 012515 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI-- 330 (462)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-- 330 (462)
.+.+|++|++++|.+.... .+..++.+++|++|++++|.+.......+ ..+ +|++|++++|.+
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~L-~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLP-------VCKEFGNLTKLTFLGLSAAKFRQLDLLPV-----AHL-HLSCILLDLVSYHI 183 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCC-------CCGGGGGCTTCCEEEEECSBCCTTTTGGG-----TTS-CEEEEEEEESSCCC
T ss_pred --ccccCCEEECCCCCccccC-------chHhhcccCcccEEecCCCccccCchhhh-----hhc-eeeEEEeecccccc
Confidence 2789999999999987622 23567888999999999999987443322 222 349999999988
Q ss_pred CCccccc----C---------------------------------------cccHHHh---hhCCC--------------
Q 012515 331 GGWLSKY----D---------------------------------------RSGPLFS---LGAGK-------------- 350 (462)
Q Consensus 331 ~~~~~~~----~---------------------------------------~~~l~~~---l~~~~-------------- 350 (462)
++..+.. . +..+... +....
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 4322200 0 0000000 00000
Q ss_pred ----------CCCCccEEEccCCCCCcc---hH-------------------------HHHHHH----------------
Q 012515 351 ----------SLQSLRLLNLRGNNLCKA---DA-------------------------RDLGSA---------------- 376 (462)
Q Consensus 351 ----------~l~~L~~L~L~~n~l~~~---~~-------------------------~~l~~~---------------- 376 (462)
...+|++|++++|.+++. .+ ..+...
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 012566666666655421 00 111111
Q ss_pred -----hhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccC
Q 012515 377 -----LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIAD 451 (462)
Q Consensus 377 -----l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~ 451 (462)
...+++|++|++++|.+++. .+ ..+..+++|+.|++++|+++... .++..+.. .++|++|++++
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~-l~~L~~L~l~~ 412 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDS-----VF---QGCSTLKRLQTLILQRNGLKNFF--KVALMTKN-MSSLETLDVSL 412 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTT-----TT---TTCCSCSSCCEEECCSSCCCBTT--HHHHTTTT-CTTCCEEECTT
T ss_pred ccccCccCCCCceEEECCCCccccc-----hh---hhhcccCCCCEEECCCCCcCCcc--cchhhhcC-CCCCCEEECCC
Confidence 05678999999999999863 33 56788899999999999998621 24556666 35699999999
Q ss_pred CCCCCccc
Q 012515 452 NNLGRFCA 459 (462)
Q Consensus 452 N~l~~~~~ 459 (462)
|++++.++
T Consensus 413 N~l~~~~~ 420 (562)
T 3a79_B 413 NSLNSHAY 420 (562)
T ss_dssp SCCBSCCS
T ss_pred CcCCCccC
Confidence 99987554
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=1.8e-16 Score=163.00 Aligned_cols=206 Identities=15% Similarity=0.168 Sum_probs=144.4
Q ss_pred CCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCc
Q 012515 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (462)
Q Consensus 196 ~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (462)
..+|++|++++|.+......+ ...+++|++|++++|.+.+..+.... ....+++|++|++++|.+...
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~--- 376 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSF----SQHLKSLEFLDLSENLMVEEYLKNSA-----CKGAWPSLQTLVLSQNHLRSM--- 376 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHH----HHHCTTCCEEECCSSCCCHHHHHHHT-----CTTSSTTCCEEECTTSCCCCH---
T ss_pred cccceEEEeccCccccCCHHH----HhcCccccEEEccCCccccccccchh-----hhhccccCcEEEccCCccccc---
Confidence 456788888887765433222 34578889999999888865443210 011267888999998888761
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCc
Q 012515 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (462)
Q Consensus 276 ~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L 355 (462)
......+..+++|++|++++|+++. .+.. +..+++|++|++++|.+++. +..+. ++|
T Consensus 377 ---~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-----~~~~~~L~~L~Ls~N~l~~l---------~~~~~-----~~L 433 (549)
T 2z81_A 377 ---QKTGEILLTLKNLTSLDISRNTFHP-MPDS-----CQWPEKMRFLNLSSTGIRVV---------KTCIP-----QTL 433 (549)
T ss_dssp ---HHHHHHGGGCTTCCEEECTTCCCCC-CCSC-----CCCCTTCCEEECTTSCCSCC---------CTTSC-----TTC
T ss_pred ---ccchhhhhcCCCCCEEECCCCCCcc-CChh-----hcccccccEEECCCCCcccc---------cchhc-----CCc
Confidence 1123557788889999999988874 3322 23467889999999888741 11111 578
Q ss_pred cEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH
Q 012515 356 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 435 (462)
Q Consensus 356 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 435 (462)
++|+|++|++++. ...+++|++|++++|.|+. +|. ...+++|+.|++++|+++.. .++
T Consensus 434 ~~L~Ls~N~l~~~--------~~~l~~L~~L~Ls~N~l~~------ip~----~~~l~~L~~L~Ls~N~l~~~----~~~ 491 (549)
T 2z81_A 434 EVLDVSNNNLDSF--------SLFLPRLQELYISRNKLKT------LPD----ASLFPVLLVMKISRNQLKSV----PDG 491 (549)
T ss_dssp SEEECCSSCCSCC--------CCCCTTCCEEECCSSCCSS------CCC----GGGCTTCCEEECCSSCCCCC----CTT
T ss_pred eEEECCCCChhhh--------cccCChhcEEECCCCccCc------CCC----cccCccCCEEecCCCccCCc----CHH
Confidence 9999999998862 2578899999999999885 552 24568999999999999874 334
Q ss_pred HHhcCCCCCcEEEccCCCCCCccc
Q 012515 436 TLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 436 ~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
.+.. .++|++|++++|++....+
T Consensus 492 ~~~~-l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 492 IFDR-LTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGG-CTTCCEEECCSSCBCCCHH
T ss_pred HHhc-CcccCEEEecCCCccCCCc
Confidence 4666 3569999999999877654
No 81
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.67 E-value=1.1e-15 Score=133.85 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=106.5
Q ss_pred HHhcCCCccEEEccCC-CCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCC
Q 012515 220 LIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH 298 (462)
Q Consensus 220 l~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~ 298 (462)
.....++|++|+|++| .+++.+...++. .+..+++|++|+|++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~------------------------------------~L~~~~~L~~L~Ls~ 74 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAE------------------------------------ALKTNTYVKKFSIVG 74 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHH------------------------------------HHTTCCSCCEEECTT
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHH------------------------------------HHHhCCCcCEEECcC
Confidence 3445667777777777 777666665544 444557788888888
Q ss_pred CCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEc--cCCCCCcchHHHHHHH
Q 012515 299 CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL--RGNNLCKADARDLGSA 376 (462)
Q Consensus 299 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L--~~n~l~~~~~~~l~~~ 376 (462)
|.+++.+...++.++..+ ++|++|+|++|.+++ .+...+...+. ..++|++|+| ++|.|+++|+..+..+
T Consensus 75 n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~~----~g~~~l~~~L~---~n~~L~~L~L~~~~N~i~~~g~~~l~~~ 146 (185)
T 1io0_A 75 TRSNDPVAFALAEMLKVN-NTLKSLNVESNFISG----SGILALVEALQ---SNTSLIELRIDNQSQPLGNNVEMEIANM 146 (185)
T ss_dssp SCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCH----HHHHHHHHGGG---GCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhC-CCcCEEECcCCcCCH----HHHHHHHHHHH---hCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence 888888888888887654 778888888888883 44555666666 4478999999 8999999999999999
Q ss_pred hhcCCCCCEEeCCCCCCCchhH
Q 012515 377 LVHIPNLEILDISDNTIEDDGI 398 (462)
Q Consensus 377 l~~~~~L~~L~Ls~N~l~~~g~ 398 (462)
+..+++|++|++++|.|++.|.
T Consensus 147 L~~n~~L~~L~L~~n~i~~~~~ 168 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQGPRLR 168 (185)
T ss_dssp HHHCSSCCEEECCCSSHHHHHH
T ss_pred HHhCCCcCEEeccCCCCChHHH
Confidence 9999999999999999998873
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=8.1e-18 Score=181.75 Aligned_cols=243 Identities=15% Similarity=0.095 Sum_probs=130.1
Q ss_pred ccceeeeccccc-hHh-hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 012515 175 YARCLRLQNALC-VEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (462)
Q Consensus 175 ~~~~l~l~~~~~-~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~ 252 (462)
.++.+++.++.. ..+ +..+.++++|+.|+|++|.+....+.. +.++++|++|+|++|.+++..+.. ..
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~------~~ 118 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKD------GY 118 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTT------CC
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccC------cc
Confidence 345556655522 222 344556677777777777654332211 345667777777777665422211 00
Q ss_pred cccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCC-------------
Q 012515 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS------------- 319 (462)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~------------- 319 (462)
...+.+|++|++++|.+.... ....++.+++|++|+|++|.+....+..+... .. ++
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~-------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l-~~--~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLY-------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-QG--KTLSFFSLAANSLYS 188 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCC-------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH-HH--CSSCCCEECCSBSCC
T ss_pred ccccCCCCEEECCCCcccccc-------cchhHhhCCCCCEEECCCCcCCeeCHHHcccc-cC--CccceEECCCCcccc
Confidence 112566777777777765521 12345667777777777776655333332210 00 23
Q ss_pred -----------------ccEEEecCCCCCCcccccCcccHHHhhh-----------------------------CCCC--
Q 012515 320 -----------------LSILDLSGNSIGGWLSKYDRSGPLFSLG-----------------------------AGKS-- 351 (462)
Q Consensus 320 -----------------L~~L~Ls~n~l~~~~~~~~~~~l~~~l~-----------------------------~~~~-- 351 (462)
|++|++++|.+++..+. .+...+. .+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG----NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS----GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred ccccchhhcCCccccCceeEEecCCCcCchhHHH----HHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 44445544444432221 0111000 0001
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHH
Q 012515 352 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS 431 (462)
Q Consensus 352 l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 431 (462)
.++|+.|++++|.++.. .+..+..+++|+.|++++|.|+.. .+ ..+..+++|+.|++++|+++..
T Consensus 265 ~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~-----~~---~~~~~l~~L~~L~Ls~N~l~~~--- 329 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINKI-----AD---EAFYGLDNLQVLNLSYNLLGEL--- 329 (844)
T ss_dssp TSCCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCEE-----CT---TTTTTCSSCCEEEEESCCCSCC---
T ss_pred cCCccEEECCCCccccc----ChhhhhcCCCCCEEECCCCcCCCC-----Ch---HHhcCCCCCCEEECCCCCCCcc---
Confidence 14577777777776652 344566677777777777777652 22 4456667777777777777653
Q ss_pred HHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012515 432 QLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 432 ~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
.+..+.. .++|++|++++|.|++..
T Consensus 330 -~~~~~~~-l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 330 -YSSNFYG-LPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp -CSCSCSS-CTTCCEEECCSCCCCCCC
T ss_pred -CHHHhcC-CCCCCEEECCCCCCCccC
Confidence 2334555 345777888777776543
No 83
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=1.8e-17 Score=170.44 Aligned_cols=237 Identities=16% Similarity=0.165 Sum_probs=175.9
Q ss_pred cccceeeeccccchHh-hhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 012515 174 HYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (462)
Q Consensus 174 ~~~~~l~l~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~ 252 (462)
..++.+++.++....+ +..+.++++|++|++++|.+....... +..+++|++|++++|.++...+..+..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA----FYSLGSLEHLDLSDNHLSSLSSSWFGP----- 96 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCSCCHHHHTT-----
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh----ccccccCCEEECCCCccCccCHHHhcc-----
Confidence 4667778887776654 346778899999999999876543222 356899999999999998766665543
Q ss_pred cccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCC-CChhhHHHHHHHHhhCCCCccEEEecCCCCC
Q 012515 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (462)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 331 (462)
+.+|++|++++|.+.... ....+..+++|++|++++|. ++...... +..+++|++|++++|.++
T Consensus 97 ---l~~L~~L~Ls~n~l~~~~-------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-----~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 97 ---LSSLKYLNLMGNPYQTLG-------VTSLFPNLTNLQTLRIGNVETFSEIRRID-----FAGLTSLNELEIKALSLR 161 (549)
T ss_dssp ---CTTCCEEECTTCCCSSSC-------SSCSCTTCTTCCEEEEEESSSCCEECTTT-----TTTCCEEEEEEEEETTCC
T ss_pred ---CCCCcEEECCCCcccccc-------hhhhhhccCCccEEECCCCccccccCHhh-----hhcccccCeeeccCCccc
Confidence 789999999999987522 23456788999999999998 44322222 345789999999999998
Q ss_pred CcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHH-hhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcC
Q 012515 332 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA-LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 410 (462)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~ 410 (462)
+..+ ..+. .+++|++|++++|.++. ++.. +..+++|+.|++++|.++..... +. ....
T Consensus 162 ~~~~--------~~l~---~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~--~~~~ 220 (549)
T 2z81_A 162 NYQS--------QSLK---SIRDIHHLTLHLSESAF-----LLEIFADILSSVRYLELRDTNLARFQFS---PL--PVDE 220 (549)
T ss_dssp EECT--------TTTT---TCSEEEEEEEECSBSTT-----HHHHHHHSTTTBSEEEEESCBCTTCCCC---CC--SSCC
T ss_pred ccCh--------hhhh---ccccCceEecccCcccc-----cchhhHhhcccccEEEccCCcccccccc---cc--chhh
Confidence 7544 3444 66899999999999875 4444 35689999999999998752100 00 1234
Q ss_pred CCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012515 411 RCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 411 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
.+++|+.|++++|.+++.+...+...+.. ..+|+.+++++|.+.+
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~-~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRY-ILELSEVEFDDCTLNG 265 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGG-CTTCCEEEEESCEEEC
T ss_pred hhhcccceeccccccchhHHHHHHHHhhh-hccccccccccccccc
Confidence 56899999999999999888778777766 4568999998887654
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=3.7e-17 Score=150.72 Aligned_cols=203 Identities=17% Similarity=0.171 Sum_probs=136.9
Q ss_pred CcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchh
Q 012515 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (462)
Q Consensus 198 ~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (462)
..++++++++.+......+ .+++++|+|++|.++......+.. +.+|++|++++|.+..
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-------~~~l~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~------ 73 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-------PADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQT------ 73 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-------CTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECTTSCCCC------
T ss_pred CCeEEecCCCCccccCCCC-------CCCCCEEEccCCCcCccCHhHhcC--------cccCCEEECCCCcCCc------
Confidence 3567777777655433221 357888888888887544433322 6888899999888877
Q ss_pred HHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccE
Q 012515 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (462)
Q Consensus 278 ~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~ 357 (462)
.....+..+++|++|+|++|.+....+.. +..+++|++|+|++|.+++..+ ..+ .++++|+.
T Consensus 74 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~--------~~~---~~l~~L~~ 135 (251)
T 3m19_A 74 --LSAGVFDDLTELGTLGLANNQLASLPLGV-----FDHLTQLDKLYLGGNQLKSLPS--------GVF---DRLTKLKE 135 (251)
T ss_dssp --CCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------TTT---TTCTTCCE
T ss_pred --cCHhHhccCCcCCEEECCCCcccccChhH-----hcccCCCCEEEcCCCcCCCcCh--------hHh---ccCCcccE
Confidence 33445677889999999999988643332 3456889999999999886333 222 35688999
Q ss_pred EEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChh--hHHHHH
Q 012515 358 LNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLL 434 (462)
Q Consensus 358 L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~ 434 (462)
|+|++|+|+. +++ ++..+++|++|++++|.|+. ++. ..+..+++|+.|++++|+++.. ....+.
T Consensus 136 L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~ 202 (251)
T 3m19_A 136 LRLNTNQLQS-----IPAGAFDKLTNLQTLSLSTNQLQS------VPH--GAFDRLGKLQTITLFGNQFDCSRCEILYLS 202 (251)
T ss_dssp EECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSCCBCTTSTTHHHHH
T ss_pred EECcCCcCCc-----cCHHHcCcCcCCCEEECCCCcCCc------cCH--HHHhCCCCCCEEEeeCCceeCCccccHHHH
Confidence 9999999986 444 68888999999999999886 332 4567778999999999998764 333455
Q ss_pred HHHhcCCCCCcEEEccCCCC
Q 012515 435 DTLSTLRRPPTSLSIADNNL 454 (462)
Q Consensus 435 ~~l~~l~~~L~~L~Ls~N~l 454 (462)
..+.. +. .+..+..+|.+
T Consensus 203 ~~~~~-~~-~~~~~~~~~~~ 220 (251)
T 3m19_A 203 QWIRE-NS-NKVKDGTGQNL 220 (251)
T ss_dssp HHHHH-SG-GGBCC------
T ss_pred HHHHh-cc-cceeeccCccc
Confidence 54544 11 33334444444
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=2e-16 Score=164.23 Aligned_cols=196 Identities=12% Similarity=0.068 Sum_probs=120.6
Q ss_pred cCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecC-----
Q 012515 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLR----- 297 (462)
Q Consensus 223 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls----- 297 (462)
.+++|++|+|++|.+++.....+.. . +++|++|+++ +.+.+ ..+......+++|++|+++
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~---~----~~~L~~L~L~-~~~~~-------~~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQ---K----CPNLEVLETR-NVIGD-------RGLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHT---T----CTTCCEEEEE-GGGHH-------HHHHHHHHHCTTCCEEEEECCCCS
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHH---h----CcCCCEEecc-CccCH-------HHHHHHHHhCCCCCEEEeecCccc
Confidence 3456666666666655544432211 1 5566666666 32222 2344444556777777777
Q ss_pred ------CCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEcc----CCCCCc
Q 012515 298 ------HCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLR----GNNLCK 367 (462)
Q Consensus 298 ------~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~----~n~l~~ 367 (462)
.|.+++.++..++. .+++|++|+++.|.+++... ..+.. ++++|+.|+++ .|.+++
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~l~~~~~--------~~l~~--~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLIALAQ----GCQELEYMAVYVSDITNESL--------ESIGT--YLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp STTSSTTCCCCHHHHHHHHH----HCTTCSEEEEEESCCCHHHH--------HHHHH--HCCSCCEEEEEECSCCSCCSS
T ss_pred cccccccCccCHHHHHHHHh----hCccCeEEEeecCCccHHHH--------HHHHh--hCCCCcEEEEeecCCCccccC
Confidence 35666666665543 24677777777777764222 22321 24678888886 556775
Q ss_pred chH-HHHHHHhhcCCCCCEEeCCCCC--CCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCC
Q 012515 368 ADA-RDLGSALVHIPNLEILDISDNT--IEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPP 444 (462)
Q Consensus 368 ~~~-~~l~~~l~~~~~L~~L~Ls~N~--l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L 444 (462)
... ..++..+..+++|+.|++++|. +++.++..+. ..+++|+.|++++|++++.+...+ +.. .++|
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~---~~~-~~~L 490 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-------QYSPNVRWMLLGYVGESDEGLMEF---SRG-CPNL 490 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-------HSCTTCCEEEECSCCSSHHHHHHH---HTC-CTTC
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-------HhCccceEeeccCCCCCHHHHHHH---Hhc-Cccc
Confidence 210 0134446668888888887543 7877665553 235889999999999998765444 344 4569
Q ss_pred cEEEccCCCCCCcc
Q 012515 445 TSLSIADNNLGRFC 458 (462)
Q Consensus 445 ~~L~Ls~N~l~~~~ 458 (462)
++|++++|.|++.+
T Consensus 491 ~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 491 QKLEMRGCCFSERA 504 (592)
T ss_dssp CEEEEESCCCBHHH
T ss_pred CeeeccCCCCcHHH
Confidence 99999999987654
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=3.7e-17 Score=169.21 Aligned_cols=212 Identities=20% Similarity=0.145 Sum_probs=125.1
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012515 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.++.+++.++.+..++. .+++|++|++++|.+..... .+++|++|++++|.++... .
T Consensus 82 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~lp---------~--- 138 (622)
T 3g06_A 82 ELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSLP---------V--- 138 (622)
T ss_dssp TCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSCCC---------C---
T ss_pred CCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCcCC---------C---
Confidence 44556666655544333 45666666666665443211 2456666666666655311 0
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcc
Q 012515 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 334 (462)
..++|++|++++|.+..... ..++|+.|++++|.++.- + ..+++|+.|++++|.+++..
T Consensus 139 ~l~~L~~L~Ls~N~l~~l~~------------~~~~L~~L~L~~N~l~~l-~--------~~~~~L~~L~Ls~N~l~~l~ 197 (622)
T 3g06_A 139 LPPGLQELSVSDNQLASLPA------------LPSELCKLWAYNNQLTSL-P--------MLPSGLQELSVSDNQLASLP 197 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSCC-C--------CCCTTCCEEECCSSCCSCCC
T ss_pred CCCCCCEEECcCCcCCCcCC------------ccCCCCEEECCCCCCCCC-c--------ccCCCCcEEECCCCCCCCCC
Confidence 13567777777776655211 123445555555544431 1 12355666666666555311
Q ss_pred ccc--------CcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHH
Q 012515 335 SKY--------DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV 406 (462)
Q Consensus 335 ~~~--------~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~ 406 (462)
... ....+. .+.. .+++|++|+|++|+|+. ++ ..+++|+.|++++|.|+. +|
T Consensus 198 ~~~~~L~~L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~N~L~~------lp--- 257 (622)
T 3g06_A 198 TLPSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNRLTS-----LP---VLPSELKELMVSGNRLTS------LP--- 257 (622)
T ss_dssp CCCTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC------CC---
T ss_pred CccchhhEEECcCCccc-ccCC--CCCCCCEEEccCCccCc-----CC---CCCCcCcEEECCCCCCCc------CC---
Confidence 000 000000 0010 22678899999998886 33 456789999999999886 54
Q ss_pred hhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 407 QASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 407 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
. .+++|+.|++++|+|+. ++..+..+ ++|+.|++++|+|++..+
T Consensus 258 ~---~~~~L~~L~Ls~N~L~~-----lp~~l~~l-~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLTR-----LPESLIHL-SSETTVNLEGNPLSERTL 301 (622)
T ss_dssp C---CCTTCCEEECCSSCCCS-----CCGGGGGS-CTTCEEECCSCCCCHHHH
T ss_pred c---ccccCcEEeCCCCCCCc-----CCHHHhhc-cccCEEEecCCCCCCcCH
Confidence 2 45889999999999996 66777774 569999999999987654
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=6.4e-17 Score=152.37 Aligned_cols=203 Identities=17% Similarity=0.141 Sum_probs=148.0
Q ss_pred hhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCC
Q 012515 193 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 272 (462)
Q Consensus 193 l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~ 272 (462)
+.+++++++++++++.+......+ .++++.|+|++|.++...+..+.. +.+|++|++++|.+...
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-------~~~l~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-------PKDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRAELTKL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-------CTTCCEEECTTSCCSEEEGGGGTT--------CTTCCEEECTTSCCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-------CCCCCEEEcCCCcCCccCHHHhhc--------CCCCCEEECCCCccCcc
Confidence 445677888888888766433221 357899999999887654443332 78899999999988762
Q ss_pred CCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCC
Q 012515 273 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 352 (462)
Q Consensus 273 ~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l 352 (462)
. . ...+++|++|++++|.+.. .+.. ...+++|++|++++|.+++..+ .. +.++
T Consensus 71 ~---------~-~~~l~~L~~L~Ls~N~l~~-l~~~-----~~~l~~L~~L~l~~N~l~~l~~--------~~---~~~l 123 (290)
T 1p9a_G 71 Q---------V-DGTLPVLGTLDLSHNQLQS-LPLL-----GQTLPALTVLDVSFNRLTSLPL--------GA---LRGL 123 (290)
T ss_dssp E---------C-CSCCTTCCEEECCSSCCSS-CCCC-----TTTCTTCCEEECCSSCCCCCCS--------ST---TTTC
T ss_pred c---------C-CCCCCcCCEEECCCCcCCc-Cchh-----hccCCCCCEEECCCCcCcccCH--------HH---HcCC
Confidence 1 1 1567899999999998874 2221 2456889999999999886433 22 3366
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012515 353 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 432 (462)
++|++|+|++|+|+.. .+..+..+++|+.|++++|.|+. ++. ..+..+++|+.|++++|+|+.
T Consensus 124 ~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------l~~--~~~~~l~~L~~L~L~~N~l~~----- 186 (290)
T 1p9a_G 124 GELQELYLKGNELKTL----PPGLLTPTPKLEKLSLANNNLTE------LPA--GLLNGLENLDTLLLQENSLYT----- 186 (290)
T ss_dssp TTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCSC------CCT--TTTTTCTTCCEEECCSSCCCC-----
T ss_pred CCCCEEECCCCCCCcc----ChhhcccccCCCEEECCCCcCCc------cCH--HHhcCcCCCCEEECCCCcCCc-----
Confidence 8899999999998862 23356788899999999999886 442 456778899999999999886
Q ss_pred HHHHHhcCCCCCcEEEccCCCCC
Q 012515 433 LLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 433 l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
++..+.. ..+|+.|++++|++.
T Consensus 187 ip~~~~~-~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 187 IPKGFFG-SHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTT-TCCCSEEECCSCCBC
T ss_pred cChhhcc-cccCCeEEeCCCCcc
Confidence 5666666 456999999999875
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=7.2e-16 Score=160.00 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=113.2
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEec--------
Q 012515 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKL-------- 296 (462)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~L-------- 296 (462)
++|++|++++|.+++.....+... +++|++|++++| +.+ ..+......+++|++|++
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~-------~~~L~~L~l~~~-~~~-------~~l~~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQ-------CPKLQRLWVLDY-IED-------AGLEVLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTT-------CTTCCEEEEEGG-GHH-------HHHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred CCCCEEEccCCCCCHHHHHHHHhc-------CCCcCEEeCcCc-cCH-------HHHHHHHHhCCCCCEEEEecCccccc
Confidence 445555555555444333322111 445555555544 221 223333334556666665
Q ss_pred -CCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEcc--C----CCCC---
Q 012515 297 -RHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLR--G----NNLC--- 366 (462)
Q Consensus 297 -s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~--~----n~l~--- 366 (462)
+.+.+++.++..++. .+++|++|+++.|.+++... ..+.. .+++|+.|+++ + +.++
T Consensus 354 ~~~~~l~~~~l~~l~~----~~~~L~~L~~~~~~l~~~~~--------~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSM----GCPKLESVLYFCRQMTNAAL--------ITIAR--NRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp SCSSCCCHHHHHHHHH----HCTTCCEEEEEESCCCHHHH--------HHHHH--HCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred ccCCCCCHHHHHHHHH----hchhHHHHHHhcCCcCHHHH--------HHHHh--hCCCcceeEeecccCCCcccccCCc
Confidence 234555555554433 23566666666666553211 12221 34678888888 4 5676
Q ss_pred -cchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCc
Q 012515 367 -KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPT 445 (462)
Q Consensus 367 -~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~ 445 (462)
+.| +...+..+++|+.|++++ .+++.++..+.. .+++|+.|++++|.+++.+...+...+ ++|+
T Consensus 420 ~~~~---~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~-------~~~~L~~L~L~~~~i~~~~~~~l~~~~----~~L~ 484 (594)
T 2p1m_B 420 LDIG---FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT-------YAKKMEMLSVAFAGDSDLGMHHVLSGC----DSLR 484 (594)
T ss_dssp THHH---HHHHHHHCTTCCEEECCS-SCCHHHHHHHHH-------HCTTCCEEEEESCCSSHHHHHHHHHHC----TTCC
T ss_pred hhhH---HHHHHhhCCCccEEeecC-cccHHHHHHHHH-------hchhccEeeccCCCCcHHHHHHHHhcC----CCcC
Confidence 444 334466778888888877 788877666542 248899999999999998877765543 4499
Q ss_pred EEEccCCCCCCccc
Q 012515 446 SLSIADNNLGRFCA 459 (462)
Q Consensus 446 ~L~Ls~N~l~~~~~ 459 (462)
+|++++|.+++.+.
T Consensus 485 ~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 485 KLEIRDCPFGDKAL 498 (594)
T ss_dssp EEEEESCSCCHHHH
T ss_pred EEECcCCCCcHHHH
Confidence 99999999976553
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=9.8e-17 Score=147.88 Aligned_cols=180 Identities=19% Similarity=0.194 Sum_probs=140.1
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChh
Q 012515 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (462)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~ 304 (462)
.+.++++++++.++... ..+ ..++++|++++|.+.. .....+..+++|++|+|++|.+.+.
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~----------~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~ 74 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGI----------PADTEKLDLQSTGLAT--------LSDATFRGLTKLTWLNLDYNQLQTL 74 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCC----------CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCeEEecCCCCccccC-CCC----------CCCCCEEEccCCCcCc--------cCHhHhcCcccCCEEECCCCcCCcc
Confidence 45789999998876321 111 3579999999999987 3344677889999999999999875
Q ss_pred hHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH-HhhcCCCC
Q 012515 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNL 383 (462)
Q Consensus 305 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L 383 (462)
.+.. +..+++|++|++++|.+++..+ ..+ .++++|++|+|++|+|+. +++ .+..+++|
T Consensus 75 ~~~~-----~~~l~~L~~L~L~~n~l~~~~~--------~~~---~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L 133 (251)
T 3m19_A 75 SAGV-----FDDLTELGTLGLANNQLASLPL--------GVF---DHLTQLDKLYLGGNQLKS-----LPSGVFDRLTKL 133 (251)
T ss_dssp CTTT-----TTTCTTCCEEECTTSCCCCCCT--------TTT---TTCTTCCEEECCSSCCCC-----CCTTTTTTCTTC
T ss_pred CHhH-----hccCCcCCEEECCCCcccccCh--------hHh---cccCCCCEEEcCCCcCCC-----cChhHhccCCcc
Confidence 4433 3557899999999999986433 223 366899999999999996 443 46889999
Q ss_pred CEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCc
Q 012515 384 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 384 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
++|++++|.|+. ++. ..+..+++|+.|+|++|+++.. ....+.. .++|++|++++|++...
T Consensus 134 ~~L~Ls~N~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 134 KELRLNTNQLQS------IPA--GAFDKLTNLQTLSLSTNQLQSV----PHGAFDR-LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred cEEECcCCcCCc------cCH--HHcCcCcCCCEEECCCCcCCcc----CHHHHhC-CCCCCEEEeeCCceeCC
Confidence 999999999986 442 4577889999999999999874 2235555 35699999999999765
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=3.8e-16 Score=138.33 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=117.2
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012515 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
+.+|++|++++|.+.. +. .+..+++|++|++++|.+.... . ...+++|++|++++|.+++..+
T Consensus 43 l~~L~~L~l~~n~i~~---------l~-~l~~l~~L~~L~l~~n~~~~~~--~-----l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 43 MNSLTYITLANINVTD---------LT-GIEYAHNIKDLTINNIHATNYN--P-----ISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHTCCEEEEESSCCSC---------CT-TGGGCTTCSEEEEESCCCSCCG--G-----GTTCTTCCEEEEECTTCBGGGS
T ss_pred cCCccEEeccCCCccC---------hH-HHhcCCCCCEEEccCCCCCcch--h-----hhcCCCCCEEEeECCccCcccC
Confidence 4568888888888775 22 4677889999999999876532 2 3557899999999999986333
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCC-CCchhHHhHHHHHHhhcCCCCC
Q 012515 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
..+..+++|++|++++|++++. .+..+..+++|++|++++|. +++ ++ .+..+++
T Consensus 106 -----------~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~------~~----~l~~l~~ 160 (197)
T 4ezg_A 106 -----------PNLSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITD------IM----PLKTLPE 160 (197)
T ss_dssp -----------CCCTTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCC------CG----GGGGCSS
T ss_pred -----------hhhcCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCccc------cH----hhcCCCC
Confidence 3344678999999999999973 56678899999999999998 887 53 4567799
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012515 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
|+.|++++|++++. . .+..+ ++|++|++++|+|++
T Consensus 161 L~~L~l~~n~i~~~-----~-~l~~l-~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 161 LKSLNIQFDGVHDY-----R-GIEDF-PKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEECTTBCCCCC-----T-TGGGC-SSCCEEEECBC----
T ss_pred CCEEECCCCCCcCh-----H-HhccC-CCCCEEEeeCcccCC
Confidence 99999999999883 2 56663 569999999999976
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=2.8e-16 Score=148.03 Aligned_cols=171 Identities=23% Similarity=0.198 Sum_probs=87.2
Q ss_pred cCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCC
Q 012515 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (462)
Q Consensus 195 ~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (462)
.+++|++|++++|.+.... . ...+++|++|++++|.+++... +. .+.+|++|++++|.+..
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~-----~~~l~~L~~L~L~~n~l~~~~~--l~--------~l~~L~~L~l~~n~l~~--- 104 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-G-----IQYLPNVTKLFLNGNKLTDIKP--LA--------NLKNLGWLFLDENKVKD--- 104 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-T-----GGGCTTCCEEECCSSCCCCCGG--GT--------TCTTCCEEECCSSCCCC---
T ss_pred hcCcccEEEccCCCcccCh-h-----HhcCCCCCEEEccCCccCCCcc--cc--------cCCCCCEEECCCCcCCC---
Confidence 3455666666666543321 1 2345666666666666654322 11 14556666666665544
Q ss_pred chhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCC
Q 012515 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (462)
Q Consensus 275 ~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 354 (462)
+ ..+..+++|++|++++|.+.+. .. ...+++|++|++++|.+++. ..+. .+++
T Consensus 105 ------~-~~l~~l~~L~~L~L~~n~i~~~--~~-----l~~l~~L~~L~l~~n~l~~~----------~~l~---~l~~ 157 (291)
T 1h6t_A 105 ------L-SSLKDLKKLKSLSLEHNGISDI--NG-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTK 157 (291)
T ss_dssp ------G-GGGTTCTTCCEEECTTSCCCCC--GG-----GGGCTTCCEEECCSSCCCCC----------GGGG---GCTT
T ss_pred ------C-hhhccCCCCCEEECCCCcCCCC--hh-----hcCCCCCCEEEccCCcCCcc----------hhhc---cCCC
Confidence 1 1245555666666666655542 11 22345566666666655531 1122 3355
Q ss_pred ccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012515 355 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 355 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
|+.|++++|++++ +++ +..+++|+.|++++|.|++ ++ .+..+++|+.|++++|+++.
T Consensus 158 L~~L~L~~N~l~~-----~~~-l~~l~~L~~L~L~~N~i~~------l~----~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 158 LDTLSLEDNQISD-----IVP-LAGLTKLQNLYLSKNHISD------LR----ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCB------CG----GGTTCTTCSEEEEEEEEEEC
T ss_pred CCEEEccCCcccc-----chh-hcCCCccCEEECCCCcCCC------Ch----hhccCCCCCEEECcCCcccC
Confidence 6666666666554 222 5555566666666666554 32 23445556666666665544
No 92
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=2.6e-17 Score=177.79 Aligned_cols=61 Identities=15% Similarity=0.004 Sum_probs=29.0
Q ss_pred cceeeeccccchH-hhhh--hhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 012515 176 ARCLRLQNALCVE-ETCQ--LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP 239 (462)
Q Consensus 176 ~~~l~l~~~~~~~-~~~~--l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~ 239 (462)
++.+++.++.... .+.. +..+++|++|+|++|.+..... ...+.++++|++|+|++|.++.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCSSCCEEEEESSCCCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc---chhHhhCCCCCEEECCCCcCCe
Confidence 3445555554432 1222 4455666666666665433210 0012345666666666665544
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=6.4e-16 Score=145.59 Aligned_cols=172 Identities=19% Similarity=0.221 Sum_probs=122.6
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCCh
Q 012515 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 303 (462)
Q Consensus 224 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~ 303 (462)
+++|++|++++|.+.... . +.. +.+|++|++++|.+.. +.. +..+++|++|++++|.+.+
T Consensus 45 l~~L~~L~l~~~~i~~~~--~----~~~----l~~L~~L~L~~n~l~~---------~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ--G----IQY----LPNVTKLFLNGNKLTD---------IKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HHTCCEEECTTSCCCCCT--T----GGG----CTTCCEEECCSSCCCC---------CGG-GTTCTTCCEEECCSSCCCC
T ss_pred cCcccEEEccCCCcccCh--h----Hhc----CCCCCEEEccCCccCC---------Ccc-cccCCCCCEEECCCCcCCC
Confidence 457888888888776431 1 111 6788888888888876 222 6778888888888888876
Q ss_pred hhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCC
Q 012515 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 383 (462)
Q Consensus 304 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 383 (462)
.. . ...+++|++|++++|.+++. ..+. .+++|+.|++++|++++ + +.+..+++|
T Consensus 105 ~~--~-----l~~l~~L~~L~L~~n~i~~~----------~~l~---~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L 158 (291)
T 1h6t_A 105 LS--S-----LKDLKKLKSLSLEHNGISDI----------NGLV---HLPQLESLYLGNNKITD-----I-TVLSRLTKL 158 (291)
T ss_dssp GG--G-----GTTCTTCCEEECTTSCCCCC----------GGGG---GCTTCCEEECCSSCCCC-----C-GGGGGCTTC
T ss_pred Ch--h-----hccCCCCCEEECCCCcCCCC----------hhhc---CCCCCCEEEccCCcCCc-----c-hhhccCCCC
Confidence 21 1 34568888888888888751 1233 45788888888888886 3 567788888
Q ss_pred CEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012515 384 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 384 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
++|++++|.|++ ++ .+..+++|+.|++++|++++. . .+.. .++|+.|++++|++++..
T Consensus 159 ~~L~L~~N~l~~------~~----~l~~l~~L~~L~L~~N~i~~l-----~-~l~~-l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 159 DTLSLEDNQISD------IV----PLAGLTKLQNLYLSKNHISDL-----R-ALAG-LKNLDVLELFSQECLNKP 216 (291)
T ss_dssp SEEECCSSCCCC------CG----GGTTCTTCCEEECCSSCCCBC-----G-GGTT-CTTCSEEEEEEEEEECCC
T ss_pred CEEEccCCcccc------ch----hhcCCCccCEEECCCCcCCCC-----h-hhcc-CCCCCEEECcCCcccCCc
Confidence 888888888876 32 256678888888888888873 2 3556 355888888888876543
No 94
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=1.3e-15 Score=152.59 Aligned_cols=207 Identities=17% Similarity=0.089 Sum_probs=162.2
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012515 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.++.+++.++.....+ .+..+++|++|++++|.+.... ...+++|++|++++|.++... ..
T Consensus 43 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~-----------~~ 103 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNLD-----------VT 103 (457)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC-----------CT
T ss_pred CCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCceee-----------cC
Confidence 4455666666555443 5778899999999999876531 356899999999999988641 12
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcc
Q 012515 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 334 (462)
.+++|++|++++|.+... . +..+++|++|++++|.+++.. ...+++|++|++++|...+..
T Consensus 104 ~l~~L~~L~L~~N~l~~l---------~--~~~l~~L~~L~l~~N~l~~l~--------l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL---------D--VSQNPLLTYLNCARNTLTEID--------VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp TCTTCCEEECCSSCCSCC---------C--CTTCTTCCEEECTTSCCSCCC--------CTTCTTCCEEECTTCSCCCCC
T ss_pred CCCcCCEEECCCCcCCee---------c--CCCCCcCCEEECCCCccceec--------cccCCcCCEEECCCCCccccc
Confidence 278999999999998772 1 678899999999999998732 245789999999999644311
Q ss_pred cccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC
Q 012515 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 335 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
.+..+++|+.|++++|++++ ++ +..+++|+.|++++|.+++ + .+..+++
T Consensus 165 -------------~~~~l~~L~~L~ls~n~l~~-----l~--l~~l~~L~~L~l~~N~l~~------~-----~l~~l~~ 213 (457)
T 3bz5_A 165 -------------DVTPQTQLTTLDCSFNKITE-----LD--VSQNKLLNRLNCDTNNITK------L-----DLNQNIQ 213 (457)
T ss_dssp -------------CCTTCTTCCEEECCSSCCCC-----CC--CTTCTTCCEEECCSSCCSC------C-----CCTTCTT
T ss_pred -------------ccccCCcCCEEECCCCccce-----ec--cccCCCCCEEECcCCcCCe------e-----ccccCCC
Confidence 13366899999999999997 33 7889999999999999987 3 2567799
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012515 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
|+.|++++|++++ ++ +.. .++|++|++++|+|++..
T Consensus 214 L~~L~Ls~N~l~~-----ip--~~~-l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 214 LTFLDCSSNKLTE-----ID--VTP-LTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CSEEECCSSCCSC-----CC--CTT-CTTCSEEECCSSCCSCCC
T ss_pred CCEEECcCCcccc-----cC--ccc-cCCCCEEEeeCCcCCCcC
Confidence 9999999999998 33 555 456999999999998753
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=8.2e-17 Score=166.31 Aligned_cols=229 Identities=17% Similarity=0.134 Sum_probs=161.0
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012515 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.++.+++.++....++..+..+ +|++|++++|.+.... ...+++|++|++++|.+...... .
T Consensus 283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~-------~~~l~~L~~L~l~~n~~~~~~~~----------~ 344 (570)
T 2z63_A 283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFP-------TLKLKSLKRLTFTSNKGGNAFSE----------V 344 (570)
T ss_dssp TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCC-------BCBCSSCCEEEEESCBSCCBCCC----------C
T ss_pred cccEEEecCccchhhhhhhccC-CccEEeeccCcccccC-------cccccccCEEeCcCCcccccccc----------c
Confidence 3455566666555555555555 7777777777655221 12467788888888765532211 1
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcc
Q 012515 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 334 (462)
.+++|++|++++|.+..... ....+..+++|++|++++|.+...... ...+++|++|++++|.+++..
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~------~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVITMSSN------FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEE------EEHHHHTCSCCCEEECCSCSEEEEEEE------EETCTTCCEEECTTSEEESCT
T ss_pred cCCCCCEEeCcCCccCcccc------ccccccccCccCEEECCCCcccccccc------ccccCCCCEEEccCCcccccc
Confidence 26888999999888765211 134556778899999999987763322 245688999999998877532
Q ss_pred cccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC
Q 012515 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 335 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
+ ...+.++++|++|++++|.++.. .+..+..+++|++|++++|.+++.. +| ..+..+++
T Consensus 413 ~----------~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~p---~~~~~l~~ 471 (570)
T 2z63_A 413 E----------FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENF----LP---DIFTELRN 471 (570)
T ss_dssp T----------SCTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE----EC---SCCTTCTT
T ss_pred c----------hhhhhcCCCCCEEeCcCCccccc----chhhhhcCCcCcEEECcCCcCcccc----ch---hhhhcccC
Confidence 2 11233678999999999999873 5567889999999999999987311 33 56778899
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
|+.|++++|++++. .+..+.. .++|++|++++|++++..+
T Consensus 472 L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 472 LTFLDLSQCQLEQL----SPTAFNS-LSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CCEEECTTSCCCEE----CTTTTTT-CTTCCEEECCSSCCSCCCT
T ss_pred CCEEECCCCccccC----Chhhhhc-ccCCCEEeCCCCcCCCCCH
Confidence 99999999999984 3556666 4669999999999988654
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=8.7e-16 Score=136.04 Aligned_cols=130 Identities=21% Similarity=0.279 Sum_probs=77.2
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012515 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
+++|++|++++|.+.. + ..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+
T Consensus 65 l~~L~~L~l~~n~~~~---------~-~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 65 AHNIKDLTINNIHATN---------Y-NPISGLSNLERLRIMGKDVTSDKIPNL-----SGLTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp CTTCSEEEEESCCCSC---------C-GGGTTCTTCCEEEEECTTCBGGGSCCC-----TTCTTCCEEECCSSBCBGGGH
T ss_pred CCCCCEEEccCCCCCc---------c-hhhhcCCCCCEEEeECCccCcccChhh-----cCCCCCCEEEecCCccCcHhH
Confidence 4556666666664433 1 234556677777777777665444433 335667777777777664322
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCC-CCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC
Q 012515 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 414 (462)
..+. .+++|++|++++|. +++ ++ .+..+++|++|++++|.|++ + ..+..+++
T Consensus 130 --------~~l~---~l~~L~~L~L~~n~~i~~-----~~-~l~~l~~L~~L~l~~n~i~~------~----~~l~~l~~ 182 (197)
T 4ezg_A 130 --------TKIN---TLPKVNSIDLSYNGAITD-----IM-PLKTLPELKSLNIQFDGVHD------Y----RGIEDFPK 182 (197)
T ss_dssp --------HHHT---TCSSCCEEECCSCTBCCC-----CG-GGGGCSSCCEEECTTBCCCC------C----TTGGGCSS
T ss_pred --------HHHh---hCCCCCEEEccCCCCccc-----cH-hhcCCCCCCEEECCCCCCcC------h----HHhccCCC
Confidence 3344 44677777777776 665 33 46677777777777777776 3 23445577
Q ss_pred ccEEEccCCCCCh
Q 012515 415 LVELYLENCELSG 427 (462)
Q Consensus 415 L~~L~L~~n~l~~ 427 (462)
|+.|++++|+|++
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 7777777777654
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=9e-17 Score=146.95 Aligned_cols=198 Identities=14% Similarity=0.043 Sum_probs=131.9
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhcccccCCCccEEecCC-CCCCCCCC
Q 012515 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDI-SSFIENCP 274 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~ 274 (462)
.++++|++++|.+....... +..+++|++|++++|. ++......+ ..+.+|++|++++ |.+..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~~l~~i~~~~f--------~~l~~L~~L~l~~~n~l~~--- 95 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHA----FSNLPNISRIYVSIDVTLQQLESHSF--------YNLSKVTHIEIRNTRNLTY--- 95 (239)
T ss_dssp TTCCEEEEESCCCSEECTTT----TTTCTTCCEEEEECCSSCCEECTTTE--------ESCTTCCEEEEEEETTCCE---
T ss_pred CcccEEEEeCCcceEECHHH----ccCCCCCcEEeCCCCCCcceeCHhHc--------CCCcCCcEEECCCCCCeeE---
Confidence 36888888888765443221 3467888888888886 764332222 2267888888887 77766
Q ss_pred chhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCcc---EEEecCC-CCCCcccccCcccHHHhhhCCC
Q 012515 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS---ILDLSGN-SIGGWLSKYDRSGPLFSLGAGK 350 (462)
Q Consensus 275 ~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~---~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~ 350 (462)
.....+..+++|++|++++|.+.. .+. +..+++|+ +|++++| .+++..+ . .+.
T Consensus 96 -----i~~~~f~~l~~L~~L~l~~n~l~~-lp~------~~~l~~L~~L~~L~l~~N~~l~~i~~--------~---~~~ 152 (239)
T 2xwt_C 96 -----IDPDALKELPLLKFLGIFNTGLKM-FPD------LTKVYSTDIFFILEITDNPYMTSIPV--------N---AFQ 152 (239)
T ss_dssp -----ECTTSEECCTTCCEEEEEEECCCS-CCC------CTTCCBCCSEEEEEEESCTTCCEECT--------T---TTT
T ss_pred -----cCHHHhCCCCCCCEEeCCCCCCcc-ccc------cccccccccccEEECCCCcchhhcCc--------c---ccc
Confidence 223456677888888888888876 222 23456676 8889888 7775322 2 233
Q ss_pred CCCCcc-EEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCC-CCchhHHhHHHHHHhhcCCC-CCccEEEccCCCCCh
Q 012515 351 SLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERC-NPLVELYLENCELSG 427 (462)
Q Consensus 351 ~l~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~ 427 (462)
++++|+ +|++++|+++. ++......++|++|++++|+ ++. ++. ..+..+ ++|+.|++++|+++.
T Consensus 153 ~l~~L~~~L~l~~n~l~~-----i~~~~~~~~~L~~L~L~~n~~l~~------i~~--~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTS-----VQGYAFNGTKLDAVYLNKNKYLTV------IDK--DAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TTBSSEEEEECCSCCCCE-----ECTTTTTTCEEEEEECTTCTTCCE------ECT--TTTTTCSBCCSEEECTTCCCCC
T ss_pred chhcceeEEEcCCCCCcc-----cCHhhcCCCCCCEEEcCCCCCccc------CCH--HHhhccccCCcEEECCCCcccc
Confidence 567888 88998888885 44433333788889998885 775 432 456667 788899999988876
Q ss_pred hhHHHHHHHHhcCCCCCcEEEccCCC
Q 012515 428 RGVSQLLDTLSTLRRPPTSLSIADNN 453 (462)
Q Consensus 428 ~~~~~l~~~l~~l~~~L~~L~Ls~N~ 453 (462)
. +.. . -++|+.|+++++.
T Consensus 220 l-----~~~--~-~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 220 L-----PSK--G-LEHLKELIARNTW 237 (239)
T ss_dssp C-----CCT--T-CTTCSEEECTTC-
T ss_pred C-----Chh--H-hccCceeeccCcc
Confidence 2 222 2 2348888887763
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=4.6e-16 Score=159.09 Aligned_cols=165 Identities=20% Similarity=0.194 Sum_probs=118.0
Q ss_pred CCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCch
Q 012515 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (462)
Q Consensus 197 ~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (462)
++|++|+|++|.+.... ..+++|++|++++|.++.. +. + ..+|++|++++|.++..
T Consensus 80 ~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~i-p~-l----------~~~L~~L~Ls~N~l~~l---- 135 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTL-PE-L----------PASLKHLDVDNNQLTML---- 135 (571)
T ss_dssp TTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-CC-C----------CTTCCEEECCSSCCSCC----
T ss_pred CCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCc-ch-h----------hcCCCEEECCCCcCCCC----
Confidence 67899999998876322 2367899999999988752 11 1 23789999999988762
Q ss_pred hHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCcc
Q 012515 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (462)
Q Consensus 277 ~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~ 356 (462)
+. .+++|++|++++|.++. .+. .+++|++|+|++|.+++ +| . +. ++|+
T Consensus 136 -----p~---~l~~L~~L~Ls~N~l~~-lp~--------~l~~L~~L~Ls~N~L~~-lp--------~-l~-----~~L~ 183 (571)
T 3cvr_A 136 -----PE---LPALLEYINADNNQLTM-LPE--------LPTSLEVLSVRNNQLTF-LP--------E-LP-----ESLE 183 (571)
T ss_dssp -----CC---CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-CC--------C-CC-----TTCC
T ss_pred -----CC---cCccccEEeCCCCccCc-CCC--------cCCCcCEEECCCCCCCC-cc--------h-hh-----CCCC
Confidence 22 46789999999998876 222 25789999999999886 22 2 22 6889
Q ss_pred EEEccCCCCCcchHHHHHHHhhcCCCC-------CEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhh
Q 012515 357 LLNLRGNNLCKADARDLGSALVHIPNL-------EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 429 (462)
Q Consensus 357 ~L~L~~n~l~~~~~~~l~~~l~~~~~L-------~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 429 (462)
.|+|++|+|+. ++. +.. +| +.|+|++|.|+. +| ..+..+++|+.|+|++|+++...
T Consensus 184 ~L~Ls~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~------lp---~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 184 ALDVSTNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH------IP---ENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp EEECCSSCCSS-----CCC-CC----------CCEEEECCSSCCCC------CC---GGGGGSCTTEEEECCSSSCCHHH
T ss_pred EEECcCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee------cC---HHHhcCCCCCEEEeeCCcCCCcC
Confidence 99999998885 444 332 55 899999999886 55 44555789999999999998864
Q ss_pred HHHHH
Q 012515 430 VSQLL 434 (462)
Q Consensus 430 ~~~l~ 434 (462)
...+.
T Consensus 247 p~~l~ 251 (571)
T 3cvr_A 247 RESLS 251 (571)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=2.2e-15 Score=139.75 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=37.8
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012515 353 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 432 (462)
.+|+.|+|++|++++ + +.+..+++|+.|++++|.|++ ++ .+..+++|+.|++++|++++.
T Consensus 106 ~~L~~L~L~~N~l~~-----~-~~l~~l~~L~~L~Ls~N~i~~------~~----~l~~l~~L~~L~L~~N~i~~~---- 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-----T-DSLIHLKNLEILSIRNNKLKS------IV----MLGFLSKLEVLDLHGNEITNT---- 165 (263)
T ss_dssp SSCCEEECCSSCCSB-----S-GGGTTCTTCCEEECTTSCCCB------CG----GGGGCTTCCEEECTTSCCCBC----
T ss_pred CcccEEEccCCccCC-----C-hhhcCcccccEEECCCCcCCC------Ch----HHccCCCCCEEECCCCcCcch----
Confidence 445555555555554 1 234455555555555555554 21 233345555555555555542
Q ss_pred HHHHHhcCCCCCcEEEccCCCCCC
Q 012515 433 LLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 433 l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
..+.. .++|+.|++++|++++
T Consensus 166 --~~l~~-l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 --GGLTR-LKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --TTSTT-CCCCCEEEEEEEEEEC
T ss_pred --HHhcc-CCCCCEEeCCCCcccC
Confidence 23333 2335555555555443
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=1.4e-16 Score=145.64 Aligned_cols=180 Identities=14% Similarity=0.176 Sum_probs=135.8
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCC-CCCCCCchhHHHHHHhhcCCCCCCEEecCC-CCCC
Q 012515 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLD 302 (462)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~-n~l~ 302 (462)
++|++|++++|.++......+.. +++|++|++++|. +.. .....+..+++|++|++++ |.+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~--------l~~L~~L~l~~n~~l~~--------i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSN--------LPNISRIYVSIDVTLQQ--------LESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTT--------CTTCCEEEEECCSSCCE--------ECTTTEESCTTCCEEEEEEETTCC
T ss_pred CcccEEEEeCCcceEECHHHccC--------CCCCcEEeCCCCCCcce--------eCHhHcCCCcCCcEEECCCCCCee
Confidence 48999999999998654433322 7899999999997 765 2233677899999999999 9998
Q ss_pred hhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCcc---EEEccCC-CCCcchHHHHH-HHh
Q 012515 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR---LLNLRGN-NLCKADARDLG-SAL 377 (462)
Q Consensus 303 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~-~~l 377 (462)
...... +..+++|++|++++|.+++ .| . +. .+.+|+ +|++++| +++. ++ ..+
T Consensus 95 ~i~~~~-----f~~l~~L~~L~l~~n~l~~-lp--------~-~~---~l~~L~~L~~L~l~~N~~l~~-----i~~~~~ 151 (239)
T 2xwt_C 95 YIDPDA-----LKELPLLKFLGIFNTGLKM-FP--------D-LT---KVYSTDIFFILEITDNPYMTS-----IPVNAF 151 (239)
T ss_dssp EECTTS-----EECCTTCCEEEEEEECCCS-CC--------C-CT---TCCBCCSEEEEEEESCTTCCE-----ECTTTT
T ss_pred EcCHHH-----hCCCCCCCEEeCCCCCCcc-cc--------c-cc---cccccccccEEECCCCcchhh-----cCcccc
Confidence 744332 3567899999999999985 22 2 33 445555 9999999 9986 33 358
Q ss_pred hcCCCCC-EEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCC-CChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 378 VHIPNLE-ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 378 ~~~~~L~-~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
..+++|+ +|++++|.++. +|. ..+.. ++|+.|++++|+ ++... ...+..+.++|++|++++|+|+
T Consensus 152 ~~l~~L~~~L~l~~n~l~~------i~~--~~~~~-~~L~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFTS------VQG--YAFNG-TKLDAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTTBSSEEEEECCSCCCCE------ECT--TTTTT-CEEEEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCCC
T ss_pred cchhcceeEEEcCCCCCcc------cCH--hhcCC-CCCCEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCccc
Confidence 8899999 99999999986 542 33444 799999999995 88731 2345552156999999999997
Q ss_pred C
Q 012515 456 R 456 (462)
Q Consensus 456 ~ 456 (462)
+
T Consensus 219 ~ 219 (239)
T 2xwt_C 219 A 219 (239)
T ss_dssp C
T ss_pred c
Confidence 5
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=1.1e-15 Score=158.03 Aligned_cols=197 Identities=18% Similarity=0.079 Sum_probs=133.4
Q ss_pred cccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 012515 174 HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (462)
Q Consensus 174 ~~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 253 (462)
..++.+.+.++.+..++. .+++|++|+|++|.+.... ..+++|++|++++|.++....
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp--------~~l~~L~~L~Ls~N~l~~l~~----------- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP--------VLPPGLLELSIFSNPLTHLPA----------- 118 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCC--------CCCTTCCEEEECSCCCCCCCC-----------
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCC--------CCCCCCCEEECcCCcCCCCCC-----------
Confidence 466778888877765544 5688999999999876422 157899999999998874211
Q ss_pred ccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCc
Q 012515 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (462)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 333 (462)
...+|++|++++|.+..... ..++|++|++++|.++.. + ....+|+.|++++|.+++.
T Consensus 119 -~l~~L~~L~L~~N~l~~lp~------------~l~~L~~L~Ls~N~l~~l-~--------~~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQLTSLPV------------LPPGLQELSVSDNQLASL-P--------ALPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSCC-C--------CCCTTCCEEECCSSCCSCC
T ss_pred -CCCCcCEEECCCCCCCcCCC------------CCCCCCEEECcCCcCCCc-C--------CccCCCCEEECCCCCCCCC
Confidence 16789999999998876321 248999999999998762 1 1247899999999998851
Q ss_pred ccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHH---hh--------------cCCCCCEEeCCCCCCCch
Q 012515 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA---LV--------------HIPNLEILDISDNTIEDD 396 (462)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~---l~--------------~~~~L~~L~Ls~N~l~~~ 396 (462)
+ ..+++|+.|++++|+|+. ++.. +. ..++|+.|++++|.|+.
T Consensus 177 ---------~------~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~- 235 (622)
T 3g06_A 177 ---------P------MLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS- 235 (622)
T ss_dssp ---------C------CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-
T ss_pred ---------c------ccCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-
Confidence 1 123566677777776664 2111 11 12566677777776664
Q ss_pred hHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 397 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 397 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
+| ..+++|+.|++++|+|+. ++. . .++|++|++++|+|+
T Consensus 236 -----lp------~~l~~L~~L~Ls~N~L~~-----lp~---~-~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 236 -----LP------VLPSELKELMVSGNRLTS-----LPM---L-PSGLLSLSVYRNQLT 274 (622)
T ss_dssp -----CC------CCCTTCCEEECCSSCCSC-----CCC---C-CTTCCEEECCSSCCC
T ss_pred -----CC------CCCCcCcEEECCCCCCCc-----CCc---c-cccCcEEeCCCCCCC
Confidence 32 334677777777777775 332 2 345888888888777
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=3.9e-15 Score=153.82 Aligned_cols=172 Identities=22% Similarity=0.177 Sum_probs=117.3
Q ss_pred hcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCC
Q 012515 194 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 273 (462)
Q Consensus 194 ~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 273 (462)
..+.+|+.|++++|.+.... . +..+++|+.|+|++|.+....+ + . .+.+|+.|+|++|.+...
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~-----l~~l~~L~~L~Ls~N~l~~~~~--l----~----~l~~L~~L~Ls~N~l~~l- 102 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-G-----IQYLPNVTKLFLNGNKLTDIKP--L----T----NLKNLGWLFLDENKIKDL- 102 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-T-----GGGCTTCCEEECTTSCCCCCGG--G----G----GCTTCCEEECCSSCCCCC-
T ss_pred hcCCCCCEEECcCCCCCCCh-H-----HccCCCCCEEEeeCCCCCCChh--h----c----cCCCCCEEECcCCCCCCC-
Confidence 35567888888887755432 1 3457888888888887775433 1 1 267788888888877651
Q ss_pred CchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCC
Q 012515 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 353 (462)
Q Consensus 274 ~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~ 353 (462)
..+..+++|++|+|++|.+.+. .. +..+++|+.|+|++|.+++. ..+. .++
T Consensus 103 ---------~~l~~l~~L~~L~Ls~N~l~~l--~~-----l~~l~~L~~L~Ls~N~l~~l----------~~l~---~l~ 153 (605)
T 1m9s_A 103 ---------SSLKDLKKLKSLSLEHNGISDI--NG-----LVHLPQLESLYLGNNKITDI----------TVLS---RLT 153 (605)
T ss_dssp ---------TTSTTCTTCCEEECTTSCCCCC--GG-----GGGCTTCSEEECCSSCCCCC----------GGGG---SCT
T ss_pred ---------hhhccCCCCCEEEecCCCCCCC--cc-----ccCCCccCEEECCCCccCCc----------hhhc---ccC
Confidence 1456677888888888887762 11 24467788888888887751 2233 557
Q ss_pred CccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012515 354 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 354 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
+|+.|+|++|.|++ +++ +..+++|+.|+|++|.|++ ++ .+..+++|+.|+|++|+++.
T Consensus 154 ~L~~L~Ls~N~l~~-----~~~-l~~l~~L~~L~Ls~N~i~~------l~----~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 154 KLDTLSLEDNQISD-----IVP-LAGLTKLQNLYLSKNHISD------LR----ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCSEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCB------CG----GGTTCTTCSEEECCSEEEEC
T ss_pred CCCEEECcCCcCCC-----chh-hccCCCCCEEECcCCCCCC------Ch----HHccCCCCCEEEccCCcCcC
Confidence 78888888888876 333 7777888888888888776 32 35666788888888887665
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=4.1e-15 Score=153.60 Aligned_cols=151 Identities=22% Similarity=0.244 Sum_probs=80.0
Q ss_pred hhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCC
Q 012515 193 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 272 (462)
Q Consensus 193 l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~ 272 (462)
+..+++|+.|+|++|.+..... +..+++|+.|+|++|.+.... . ...+.+|+.|+|++|.+...
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~--~--------l~~l~~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDLS--S--------LKDLKKLKSLSLEHNGISDI 124 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCT--T--------STTCTTCCEEECTTSCCCCC
T ss_pred HccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCCCh--h--------hccCCCCCEEEecCCCCCCC
Confidence 4455666666666665443221 234566666666666555311 1 11255666666666665541
Q ss_pred CCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCC
Q 012515 273 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 352 (462)
Q Consensus 273 ~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l 352 (462)
..+..+++|+.|+|++|.+.+. .. +..+++|+.|+|++|.+++.. . +. .+
T Consensus 125 ----------~~l~~l~~L~~L~Ls~N~l~~l--~~-----l~~l~~L~~L~Ls~N~l~~~~---------~-l~---~l 174 (605)
T 1m9s_A 125 ----------NGLVHLPQLESLYLGNNKITDI--TV-----LSRLTKLDTLSLEDNQISDIV---------P-LA---GL 174 (605)
T ss_dssp ----------GGGGGCTTCSEEECCSSCCCCC--GG-----GGSCTTCSEEECCSSCCCCCG---------G-GT---TC
T ss_pred ----------ccccCCCccCEEECCCCccCCc--hh-----hcccCCCCEEECcCCcCCCch---------h-hc---cC
Confidence 2245556666666666666552 11 234556666666666665411 1 22 44
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCc
Q 012515 353 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 395 (462)
++|+.|+|++|+|++ + +.+..+++|+.|+|++|.+.+
T Consensus 175 ~~L~~L~Ls~N~i~~-----l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 175 TKLQNLYLSKNHISD-----L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCCEEECCSSCCCB-----C-GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCEEECcCCCCCC-----C-hHHccCCCCCEEEccCCcCcC
Confidence 566666666666664 2 245556666666666666544
No 104
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.54 E-value=2.9e-14 Score=137.72 Aligned_cols=198 Identities=17% Similarity=0.170 Sum_probs=138.1
Q ss_pred cCCCccEEEccCCCCChhHH-----HHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecC
Q 012515 223 NSETLASLEFLHCKLSPSFV-----EGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLR 297 (462)
Q Consensus 223 ~~~~L~~L~L~~~~l~~~~~-----~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls 297 (462)
.+++|+.|.+.......... ..+...+.. +++|+.|+++++.-.. +.. + .+++|++|+|.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~----~P~L~~L~L~g~~~l~---------l~~-~-~~~~L~~L~L~ 201 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA----MPLLNNLKIKGTNNLS---------IGK-K-PRPNLKSLEII 201 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT----CTTCCEEEEECCBTCB---------CCS-C-BCTTCSEEEEE
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhc----CCCCcEEEEeCCCCce---------ecc-c-cCCCCcEEEEe
Confidence 46788888886543211000 011112222 6889999998873111 111 2 26899999999
Q ss_pred CCCCChhhHHHHHHHHhhCCCCccEEEecCC--CCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH
Q 012515 298 HCHLDRDFGRMVFSSLLEASSSLSILDLSGN--SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS 375 (462)
Q Consensus 298 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 375 (462)
.|.++..++..++. ..+++|++|+|+.+ ...+ ..+.+.+...+.. ..+++|+.|+|++|.+++.++..+..
T Consensus 202 ~~~l~~~~l~~l~~---~~lp~L~~L~L~~~~~~~~~---~~~~~~l~~~l~~-~~~p~Lr~L~L~~~~i~~~~~~~la~ 274 (362)
T 2ra8_A 202 SGGLPDSVVEDILG---SDLPNLEKLVLYVGVEDYGF---DGDMNVFRPLFSK-DRFPNLKWLGIVDAEEQNVVVEMFLE 274 (362)
T ss_dssp CSBCCHHHHHHHHH---SBCTTCCEEEEECBCGGGTC---CSCGGGTGGGSCT-TTCTTCCEEEEESCTTHHHHHHHHHH
T ss_pred cCCCChHHHHHHHH---ccCCCCcEEEEecccccccc---chhHHHHHHHHhc-CCCCCcCEEeCCCCCCchHHHHHHHh
Confidence 99999988887764 34789999999742 2222 1222223333332 24689999999999999877766665
Q ss_pred HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCC
Q 012515 376 ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 453 (462)
Q Consensus 376 ~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~ 453 (462)
+ ..+++|++|+|+.|.|++.|+.++. ..+.++++|+.|++++|.|++.++..+.+++ ...+++++|+
T Consensus 275 a-~~~~~L~~LdLs~n~L~d~G~~~L~----~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al------g~~~~~~~~~ 341 (362)
T 2ra8_A 275 S-DILPQLETMDISAGVLTDEGARLLL----DHVDKIKHLKFINMKYNYLSDEMKKELQKSL------PMKIDVSDSQ 341 (362)
T ss_dssp C-SSGGGCSEEECCSSCCBHHHHHHHH----TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC------CSEEECCSBC
T ss_pred C-ccCCCCCEEECCCCCCChHHHHHHH----hhcccCCcceEEECCCCcCCHHHHHHHHHHc------CCEEEecCCc
Confidence 4 4578999999999999999988886 3445668999999999999999988887766 3458998887
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.1e-15 Score=134.75 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=93.1
Q ss_pred CCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccc
Q 012515 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
.+|++|++++|.+.. .....+..+++|++|++++|.+....... +..+++|++|++++|.+++..+
T Consensus 28 ~~l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~- 93 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS--------LPNGVFDELTSLTQLYLGGNKLQSLPNGV-----FNKLTSLTYLNLSTNQLQSLPN- 93 (208)
T ss_dssp TTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred CCCcEEEcCCCccCc--------CChhhhcccccCcEEECCCCccCccChhh-----cCCCCCcCEEECCCCcCCccCH-
Confidence 345555555555544 12223455667777777777766432221 2345677777777777764222
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCcc
Q 012515 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 416 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 416 (462)
..+ .++++|+.|++++|+++.. .+..+..+++|++|++++|.+++ ++. ..+..+++|+
T Consensus 94 -------~~~---~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~l~~L~ 151 (208)
T 2o6s_A 94 -------GVF---DKLTQLKELALNTNQLQSL----PDGVFDKLTQLKDLRLYQNQLKS------VPD--GVFDRLTSLQ 151 (208)
T ss_dssp -------TTT---TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCC
T ss_pred -------hHh---cCccCCCEEEcCCCcCccc----CHhHhccCCcCCEEECCCCccce------eCH--HHhccCCCcc
Confidence 112 2456777777777777751 22235667777777777777765 321 3355667777
Q ss_pred EEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcccc
Q 012515 417 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 460 (462)
Q Consensus 417 ~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~~ 460 (462)
.|++++|.+... .+.|++|+++.|++++.+|.
T Consensus 152 ~L~l~~N~~~~~------------~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 152 YIWLHDNPWDCT------------CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp EEECCSCCBCCC------------TTTTHHHHHHHHHCTTTBBC
T ss_pred EEEecCCCeecC------------CCCHHHHHHHHHhCCceeec
Confidence 777777776642 23477777777777776664
No 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=1e-14 Score=145.98 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=60.7
Q ss_pred ccceeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 012515 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (462)
Q Consensus 175 ~~~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~ 254 (462)
.++.+++.++....++ .+.++++|++|++++|.+.... ....+|++|++++|.++... .+ .
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp--------~~~~~L~~L~L~~n~l~~l~--~~--------~ 192 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLP--------DLPPSLEFIAAGNNQLEELP--EL--------Q 192 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSSCC--CC--------T
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccC--------CCcccccEEECcCCcCCcCc--cc--------c
Confidence 4455666666555444 4556666777777666654311 11346666666666665311 11 1
Q ss_pred cCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCC
Q 012515 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (462)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 331 (462)
.+++|++|++++|.+..... ..++|++|++++|.+.. .+. ...+++|++|++++|.++
T Consensus 193 ~l~~L~~L~l~~N~l~~l~~------------~~~~L~~L~l~~n~l~~-lp~------~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKKLPD------------LPLSLESIVAGNNILEE-LPE------LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp TCTTCCEEECCSSCCSSCCC------------CCTTCCEEECCSSCCSS-CCC------CTTCTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCCcCCcCCC------------CcCcccEEECcCCcCCc-ccc------cCCCCCCCEEECCCCcCC
Confidence 25566666666666544111 01355555555555542 221 123455566666655554
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=2e-14 Score=143.88 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=14.2
Q ss_pred ceeeeccccchHhhhhhhcCCCcCEEEeccCCC
Q 012515 177 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRF 209 (462)
Q Consensus 177 ~~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 209 (462)
+.+++.++....++ .+.++++|++|++++|.+
T Consensus 176 ~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 176 EFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp CEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred cEEECcCCcCCcCc-cccCCCCCCEEECCCCcC
Confidence 44444444433322 344445555555555443
No 108
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.50 E-value=4.8e-14 Score=122.57 Aligned_cols=133 Identities=14% Similarity=0.215 Sum_probs=117.6
Q ss_pred HHhhCCCCccEEEecCC-CCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCC
Q 012515 312 SLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD 390 (462)
Q Consensus 312 ~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 390 (462)
.+..+.+.|++|+|++| .|. +.+...+..++.. -++|+.|+|++|+|+|+|+++|+.++..+++|++|+|+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~ig----d~ga~~la~aL~~---N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVS----KERIRSLIEAACN---SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSC----HHHHHHHHHHHTT---CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHhcCCCccEEECCCCCCCC----HHHHHHHHHHHhh---CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 33455689999999996 887 4566778888884 379999999999999999999999999999999999999
Q ss_pred CCCCchhHHhHHHHHHhhcCCCCCccEEEccCC---CCChhhHHHHHHHHhcCCCCCcEEEccCCCCCC
Q 012515 391 NTIEDDGIRSLIPYFVQASERCNPLVELYLENC---ELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 456 (462)
Q Consensus 391 N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n---~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~ 456 (462)
|.|+++|+.+++ ..+..++.|++|+|++| .+++.|..++++++.. +++|+.|+++.|.+++
T Consensus 108 N~Ig~~Ga~ala----~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~-N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 108 NFLTPELLARLL----RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFASMEA 171 (197)
T ss_dssp SBCCHHHHHHHH----HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCCHHH
T ss_pred CcCCHHHHHHHH----HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh-CCCcCeEeccCCCccH
Confidence 999999999998 56777889999999875 7899999999999999 8889999999987654
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=2.6e-14 Score=146.19 Aligned_cols=141 Identities=22% Similarity=0.266 Sum_probs=67.8
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012515 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
+.+|++|++++|.++. ++. +.. +|++|++++|.++. .+. .+++|+.|++++|.+++ +|
T Consensus 99 l~~L~~L~Ls~N~l~~---------ip~-l~~--~L~~L~Ls~N~l~~-lp~--------~l~~L~~L~Ls~N~l~~-lp 156 (571)
T 3cvr_A 99 PASLEYLDACDNRLST---------LPE-LPA--SLKHLDVDNNQLTM-LPE--------LPALLEYINADNNQLTM-LP 156 (571)
T ss_dssp CTTCCEEECCSSCCSC---------CCC-CCT--TCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-CC
T ss_pred cCCCCEEEccCCCCCC---------cch-hhc--CCCEEECCCCcCCC-CCC--------cCccccEEeCCCCccCc-CC
Confidence 3555566666555544 111 111 55566666555554 111 23555666666655553 11
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCc
Q 012515 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 415 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 415 (462)
. .+++|++|+|++|+|+. ++. +. ++|+.|++++|.|+. +| . +. .+|
T Consensus 157 --------~------~l~~L~~L~Ls~N~L~~-----lp~-l~--~~L~~L~Ls~N~L~~------lp---~-~~--~~L 202 (571)
T 3cvr_A 157 --------E------LPTSLEVLSVRNNQLTF-----LPE-LP--ESLEALDVSTNLLES------LP---A-VP--VRN 202 (571)
T ss_dssp --------C------CCTTCCEEECCSSCCSC-----CCC-CC--TTCCEEECCSSCCSS------CC---C-CC-----
T ss_pred --------C------cCCCcCEEECCCCCCCC-----cch-hh--CCCCEEECcCCCCCc------hh---h-HH--Hhh
Confidence 1 22455556666665554 333 32 555666666665553 32 1 11 133
Q ss_pred -------cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCcc
Q 012515 416 -------VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 416 -------~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~ 458 (462)
+.|+|++|+|+. ++..+.. .++|++|+|++|+|++.+
T Consensus 203 ~~~~~~L~~L~Ls~N~l~~-----lp~~l~~-l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRITH-----IPENILS-LDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp -----CCEEEECCSSCCCC-----CCGGGGG-SCTTEEEECCSSSCCHHH
T ss_pred hcccccceEEecCCCccee-----cCHHHhc-CCCCCEEEeeCCcCCCcC
Confidence 555666665554 4444444 234566666666555443
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.2e-14 Score=141.23 Aligned_cols=177 Identities=20% Similarity=0.171 Sum_probs=105.7
Q ss_pred CEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHH
Q 012515 200 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV 279 (462)
Q Consensus 200 ~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 279 (462)
+.++++++.+...... -.+.++.|+|++|.++......+. ..+.+|++|++++|.+..
T Consensus 21 ~~l~c~~~~l~~iP~~-------~~~~l~~L~Ls~N~l~~l~~~~~~-------~~l~~L~~L~L~~N~i~~-------- 78 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-------LPSYTALLDLSHNNLSRLRAEWTP-------TRLTNLHSLLLSHNHLNF-------- 78 (361)
T ss_dssp TEEECCSSCCSSCCSS-------CCTTCSEEECCSSCCCEECTTSSS-------SCCTTCCEEECCSSCCCE--------
T ss_pred CEEEeCCCCcCccCcc-------CCCCCCEEECCCCCCCccChhhhh-------hcccccCEEECCCCcCCc--------
Confidence 5777777766543321 134678888888887753322211 026777788888777766
Q ss_pred HHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEE
Q 012515 280 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (462)
Q Consensus 280 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~ 359 (462)
.....+..+++|++|+|++|.|....... +..+++|++|+|++|.+++..+ ..+ .++++|+.|+
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N~i~~~~~--------~~~---~~l~~L~~L~ 142 (361)
T 2xot_A 79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFL-----FSDLQALEVLLLYNNHIVVVDR--------NAF---EDMAQLQKLY 142 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCCEECT--------TTT---TTCTTCCEEE
T ss_pred cChhhccCCCCCCEEECCCCcCCcCCHHH-----hCCCcCCCEEECCCCcccEECH--------HHh---CCcccCCEEE
Confidence 22334566777777777777776533222 2445777777777777775333 222 3557777777
Q ss_pred ccCCCCCcchHHHHHHHh----hcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCC--ccEEEccCCCCCh
Q 012515 360 LRGNNLCKADARDLGSAL----VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP--LVELYLENCELSG 427 (462)
Q Consensus 360 L~~n~l~~~~~~~l~~~l----~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~--L~~L~L~~n~l~~ 427 (462)
|++|+|+. ++..+ ..+++|+.|+|++|.|+.-.. ..+..++. ++.|+|++|++..
T Consensus 143 L~~N~l~~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--------~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 143 LSQNQISR-----FPVELIKDGNKLPKLMLLDLSSNKLKKLPL--------TDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCSSCCCS-----CCGGGTC----CTTCCEEECCSSCCCCCCH--------HHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCcCCe-----eCHHHhcCcccCCcCCEEECCCCCCCccCH--------HHhhhccHhhcceEEecCCCccC
Confidence 77777775 33322 456777777777777765221 12222233 3667777777664
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=2.3e-14 Score=129.09 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=96.2
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhH
Q 012515 227 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 306 (462)
Q Consensus 227 L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~ 306 (462)
-+++++++|.++. +.... ...+++|++++|.+..... ...+..+++|++|+|++|.++....
T Consensus 13 ~~~l~~s~n~l~~---------iP~~~--~~~~~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~L~~N~i~~i~~ 74 (220)
T 2v70_A 13 GTTVDCSNQKLNK---------IPEHI--PQYTAELRLNNNEFTVLEA-------TGIFKKLPQLRKINFSNNKITDIEE 74 (220)
T ss_dssp TTEEECCSSCCSS---------CCSCC--CTTCSEEECCSSCCCEECC-------CCCGGGCTTCCEEECCSSCCCEECT
T ss_pred CCEeEeCCCCccc---------CccCC--CCCCCEEEcCCCcCCccCc-------hhhhccCCCCCEEECCCCcCCEECH
Confidence 3577777777762 11111 3456777777777765210 1235566777777777777766433
Q ss_pred HHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEE
Q 012515 307 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 386 (462)
Q Consensus 307 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 386 (462)
.. +..+++|++|+|++|.+++..+ ..+. ++++|++|+|++|+|+. ..+..+..+++|+.|
T Consensus 75 ~~-----~~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 75 GA-----FEGASGVNEILLTSNRLENVQH--------KMFK---GLESLKTLMLRSNRITC----VGNDSFIGLSSVRLL 134 (220)
T ss_dssp TT-----TTTCTTCCEEECCSSCCCCCCG--------GGGT---TCSSCCEEECTTSCCCC----BCTTSSTTCTTCSEE
T ss_pred HH-----hCCCCCCCEEECCCCccCccCH--------hHhc---CCcCCCEEECCCCcCCe----ECHhHcCCCccCCEE
Confidence 22 2446777777777777775333 2333 55677777777777775 224556677777777
Q ss_pred eCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012515 387 DISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 387 ~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
+|++|.|+.- .| ..+..+++|+.|++++|+++.
T Consensus 135 ~L~~N~l~~~-----~~---~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 135 SLYDNQITTV-----AP---GAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCCB-----CT---TTTTTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCEE-----CH---HHhcCCCCCCEEEecCcCCcC
Confidence 7777777651 13 455666777777777777654
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=4.4e-14 Score=128.09 Aligned_cols=166 Identities=18% Similarity=0.162 Sum_probs=117.9
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhh
Q 012515 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (462)
Q Consensus 226 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~ 305 (462)
..+.++.+++.++ ..+ .. -..+|++|++++|.+.. .....+..+++|++|+|++|.++...
T Consensus 20 s~~~v~c~~~~l~-~ip--------~~--~~~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~N~l~~i~ 80 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVP--------AG--IPTNAQILYLHDNQITK--------LEPGVFDSLINLKELYLGSNQLGALP 80 (229)
T ss_dssp ETTEEECTTSCCS-SCC--------SC--CCTTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred eCCEeEccCCCcC-ccC--------CC--CCCCCCEEEcCCCccCc--------cCHHHhhCccCCcEEECCCCCCCCcC
Confidence 4667777777765 111 11 14678999999998877 33456677889999999999886633
Q ss_pred HHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCE
Q 012515 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEI 385 (462)
Q Consensus 306 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 385 (462)
... +..+++|++|+|++|.+++..+ ..+. .+++|+.|+|++|+|+. ++..+..+++|+.
T Consensus 81 ~~~-----~~~l~~L~~L~Ls~N~l~~l~~--------~~~~---~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 81 VGV-----FDSLTQLTVLDLGTNQLTVLPS--------AVFD---RLVHLKELFMCCNKLTE-----LPRGIERLTHLTH 139 (229)
T ss_dssp TTT-----TTTCTTCCEEECCSSCCCCCCT--------TTTT---TCTTCCEEECCSSCCCS-----CCTTGGGCTTCSE
T ss_pred hhh-----cccCCCcCEEECCCCcCCccCh--------hHhC---cchhhCeEeccCCcccc-----cCcccccCCCCCE
Confidence 222 3456889999999998886333 2223 56889999999999884 6777888899999
Q ss_pred EeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhh--HHHHHHHHhc
Q 012515 386 LDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG--VSQLLDTLST 439 (462)
Q Consensus 386 L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~ 439 (462)
|++++|.|+. ++. ..+..+++|+.|++++|+++... ...+...+..
T Consensus 140 L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~ 187 (229)
T 3e6j_A 140 LALDQNQLKS------IPH--GAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVAD 187 (229)
T ss_dssp EECCSSCCCC------CCT--TTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHH
T ss_pred EECCCCcCCc------cCH--HHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHh
Confidence 9999998886 332 45677788999999999887542 3444444544
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=7.9e-14 Score=129.19 Aligned_cols=147 Identities=20% Similarity=0.224 Sum_probs=83.0
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCCh
Q 012515 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 303 (462)
Q Consensus 224 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~ 303 (462)
+++|++|++++|.++... .+ .. +.+|++|++++|.+.. +.. +..+++|++|++++|.+.+
T Consensus 40 l~~L~~L~l~~n~i~~l~--~l----~~----l~~L~~L~L~~N~i~~---------~~~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--GM----QF----FTNLKELHLSHNQISD---------LSP-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--TG----GG----CTTCCEEECCSSCCCC---------CGG-GTTCSSCCEEECCSSCCSC
T ss_pred cCcCcEEECcCCCcccch--HH----hh----CCCCCEEECCCCccCC---------Chh-hccCCCCCEEECCCCccCC
Confidence 455666666666555321 11 11 4566666666666554 111 5556666666666666655
Q ss_pred hhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCC
Q 012515 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 383 (462)
Q Consensus 304 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 383 (462)
.. . ... ++|++|++++|.+++. ..+. .+++|+.|++++|++++ + +.+..+++|
T Consensus 100 l~-~------~~~-~~L~~L~L~~N~l~~~----------~~l~---~l~~L~~L~Ls~N~i~~-----~-~~l~~l~~L 152 (263)
T 1xeu_A 100 LN-G------IPS-ACLSRLFLDNNELRDT----------DSLI---HLKNLEILSIRNNKLKS-----I-VMLGFLSKL 152 (263)
T ss_dssp CT-T------CCC-SSCCEEECCSSCCSBS----------GGGT---TCTTCCEEECTTSCCCB-----C-GGGGGCTTC
T ss_pred cC-c------ccc-CcccEEEccCCccCCC----------hhhc---CcccccEEECCCCcCCC-----C-hHHccCCCC
Confidence 21 1 112 5667777777766641 1122 44667777777777665 2 246666677
Q ss_pred CEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012515 384 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (462)
Q Consensus 384 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 427 (462)
+.|++++|.|++ . ..+..+++|+.|++++|+++.
T Consensus 153 ~~L~L~~N~i~~------~----~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 153 EVLDLHGNEITN------T----GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CEEECTTSCCCB------C----TTSTTCCCCCEEEEEEEEEEC
T ss_pred CEEECCCCcCcc------h----HHhccCCCCCEEeCCCCcccC
Confidence 777777777665 2 234555667777777766554
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=1.2e-13 Score=125.30 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=90.8
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChh
Q 012515 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (462)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~ 304 (462)
++|++|+|++|.++...+..+.. +.+|++|++++|.+... ....+..+++|++|+|++|.++..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~--------l~~L~~L~L~~N~l~~i--------~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDS--------LINLKELYLGSNQLGAL--------PVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCEEEcCCCccCccCHHHhhC--------ccCCcEEECCCCCCCCc--------ChhhcccCCCcCEEECCCCcCCcc
Confidence 67888888888887644443322 67788888888887652 223456678888888888887753
Q ss_pred hHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHH-HHhhcCCCC
Q 012515 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNL 383 (462)
Q Consensus 305 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L 383 (462)
.... +..+++|++|+|++|.++. +| ..+. .+++|+.|+|++|+|+. ++ ..+..+++|
T Consensus 104 ~~~~-----~~~l~~L~~L~Ls~N~l~~-lp--------~~~~---~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L 161 (229)
T 3e6j_A 104 PSAV-----FDRLVHLKELFMCCNKLTE-LP--------RGIE---RLTHLTHLALDQNQLKS-----IPHGAFDRLSSL 161 (229)
T ss_dssp CTTT-----TTTCTTCCEEECCSSCCCS-CC--------TTGG---GCTTCSEEECCSSCCCC-----CCTTTTTTCTTC
T ss_pred ChhH-----hCcchhhCeEeccCCcccc-cC--------cccc---cCCCCCEEECCCCcCCc-----cCHHHHhCCCCC
Confidence 3222 2446788888888888773 22 3343 45778888888888875 33 356777888
Q ss_pred CEEeCCCCCCCc
Q 012515 384 EILDISDNTIED 395 (462)
Q Consensus 384 ~~L~Ls~N~l~~ 395 (462)
+.|++++|++..
T Consensus 162 ~~L~l~~N~~~c 173 (229)
T 3e6j_A 162 THAYLFGNPWDC 173 (229)
T ss_dssp CEEECTTSCBCT
T ss_pred CEEEeeCCCccC
Confidence 888888888764
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=4.6e-14 Score=127.15 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=88.0
Q ss_pred CCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccc
Q 012515 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
.++++|++++|.+.. .....+..+++|++|+|++|.++...+..+ ..+++|++|+|++|.++...+
T Consensus 32 ~~l~~L~l~~n~i~~--------i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-----~~l~~L~~L~Ls~N~l~~l~~- 97 (220)
T 2v9t_B 32 ETITEIRLEQNTIKV--------IPPGAFSPYKKLRRIDLSNNQISELAPDAF-----QGLRSLNSLVLYGNKITELPK- 97 (220)
T ss_dssp TTCCEEECCSSCCCE--------ECTTSSTTCTTCCEEECCSSCCCEECTTTT-----TTCSSCCEEECCSSCCCCCCT-
T ss_pred cCCCEEECCCCcCCC--------cCHhHhhCCCCCCEEECCCCcCCCcCHHHh-----hCCcCCCEEECCCCcCCccCH-
Confidence 467778888777765 222355667777888888877776444432 446777888888877774222
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCcc
Q 012515 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 416 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 416 (462)
.. +.++++|+.|+|++|+|+.. .+.++..+++|+.|+|++|.|+. ++. ..+..+++|+
T Consensus 98 -------~~---f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~ 155 (220)
T 2v9t_B 98 -------SL---FEGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQT------IAK--GTFSPLRAIQ 155 (220)
T ss_dssp -------TT---TTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCC
T ss_pred -------hH---ccCCCCCCEEECCCCCCCEe----CHHHcCCCCCCCEEECCCCcCCE------ECH--HHHhCCCCCC
Confidence 11 22557777888888877762 24456777778888888777765 321 3455667777
Q ss_pred EEEccCCCCCh
Q 012515 417 ELYLENCELSG 427 (462)
Q Consensus 417 ~L~L~~n~l~~ 427 (462)
.|++++|++..
T Consensus 156 ~L~L~~N~~~c 166 (220)
T 2v9t_B 156 TMHLAQNPFIC 166 (220)
T ss_dssp EEECCSSCEEC
T ss_pred EEEeCCCCcCC
Confidence 78887777644
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=1.2e-14 Score=141.22 Aligned_cols=179 Identities=21% Similarity=0.138 Sum_probs=111.4
Q ss_pred eeeeccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHh-cCCCccEEEccCCCCChhHHHHHHHHHhcccccC
Q 012515 178 CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQ-NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 256 (462)
Q Consensus 178 ~l~l~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~-~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~ 256 (462)
.++..+.....++..+. ..++.|+|++|.+....... +. .+++|++|+|++|.|+......+.. +
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------l 87 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFISSEAFVP--------V 87 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEECTTTTTT--------C
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCccChhhccC--------C
Confidence 44555554444444332 34788888888765433221 22 5778888888888877544333322 6
Q ss_pred CCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccc
Q 012515 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
.+|++|++++|.+.. .....+..+++|++|+|++|.+....+.. +..+++|++|+|++|.+++..+
T Consensus 88 ~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~L~~N~l~~l~~- 153 (361)
T 2xot_A 88 PNLRYLDLSSNHLHT--------LDEFLFSDLQALEVLLLYNNHIVVVDRNA-----FEDMAQLQKLYLSQNQISRFPV- 153 (361)
T ss_dssp TTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCCSCCG-
T ss_pred CCCCEEECCCCcCCc--------CCHHHhCCCcCCCEEECCCCcccEECHHH-----hCCcccCCEEECCCCcCCeeCH-
Confidence 778888888888766 23345667788888888888887644433 2456788888888888875222
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCC--CCEEeCCCCCCCc
Q 012515 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN--LEILDISDNTIED 395 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~--L~~L~Ls~N~l~~ 395 (462)
..+.....+++|+.|+|++|+|+.-. ...+..++. ++.|++++|++.-
T Consensus 154 -------~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 154 -------ELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp -------GGTC----CTTCCEEECCSSCCCCCC----HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred -------HHhcCcccCCcCCEEECCCCCCCccC----HHHhhhccHhhcceEEecCCCccC
Confidence 22211124578888888888888632 234555554 4778888888654
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=2.8e-15 Score=153.94 Aligned_cols=87 Identities=29% Similarity=0.326 Sum_probs=42.8
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHH
Q 012515 352 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS 431 (462)
Q Consensus 352 l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 431 (462)
+++|+.|+|++|+|+. +|..++.+++|+.|+|++|.|+. +| .+..+++|+.|+|++|+|+...
T Consensus 462 l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~------lp----~l~~l~~L~~L~Ls~N~l~~~~-- 524 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN------VD----GVANLPRLQELLLCNNRLQQSA-- 524 (567)
T ss_dssp GTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC------CG----GGTTCSSCCEEECCSSCCCSSS--
T ss_pred cccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC------Cc----ccCCCCCCcEEECCCCCCCCCC--
Confidence 3455555555555552 44455555555555555555553 32 2344455555555555555420
Q ss_pred HHHHHHhcCCCCCcEEEccCCCCCCc
Q 012515 432 QLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 432 ~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
.+..+..+ ++|++|++++|+|++.
T Consensus 525 -~p~~l~~l-~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 525 -AIQPLVSC-PRLVLLNLQGNSLCQE 548 (567)
T ss_dssp -TTGGGGGC-TTCCEEECTTSGGGGS
T ss_pred -CcHHHhcC-CCCCEEEecCCcCCCC
Confidence 03344442 3355555555555443
No 118
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=1.6e-13 Score=143.31 Aligned_cols=186 Identities=18% Similarity=0.107 Sum_probs=111.6
Q ss_pred CcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchh
Q 012515 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (462)
Q Consensus 198 ~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (462)
++++|+|++|.+....... +.++++|++|+|++|.|+.....++.. +.+|++|+|++|++..
T Consensus 53 ~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~--------L~~L~~L~Ls~N~l~~------ 114 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS------ 114 (635)
T ss_dssp TCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT--------CTTCCEEECTTCCCCE------
T ss_pred CCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcC--------CCCCCEEEccCCcCCC------
Confidence 4677888877765433221 345778888888888776443333322 6778888888887765
Q ss_pred HHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccE
Q 012515 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (462)
Q Consensus 278 ~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~ 357 (462)
.....|.++++|++|+|++|.+....... +..+++|++|++++|.++... ++..+. .++.|++
T Consensus 115 --l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-----~~~L~~L~~L~Ls~N~l~~~~-------~~~~~~---~l~~L~~ 177 (635)
T 4g8a_A 115 --LALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFK-------LPEYFS---NLTNLEH 177 (635)
T ss_dssp --ECGGGGTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCC-------CCGGGG---GCTTCCE
T ss_pred --CCHHHhcCCCCCCEEECCCCcCCCCChhh-----hhcCcccCeeccccCccccCC-------Cchhhc---cchhhhh
Confidence 22345677788888888888776532221 345677888888888776421 113333 4567888
Q ss_pred EEccCCCCCcchHHHHHHHhhcCC-CCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChh
Q 012515 358 LNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR 428 (462)
Q Consensus 358 L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~ 428 (462)
|+|++|+|+......+. .+.+.+ .+..++++.|.++. ++ ........+..+++.+|..+..
T Consensus 178 L~L~~N~l~~~~~~~l~-~L~~l~~~~~~~~ls~n~l~~------i~---~~~~~~~~~~~l~l~~n~~~~~ 239 (635)
T 4g8a_A 178 LDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNF------IQ---PGAFKEIRLHKLTLRNNFDSLN 239 (635)
T ss_dssp EECCSSCCCEECGGGGH-HHHTCTTCCCEEECTTCCCCE------EC---TTTTTTCEEEEEEEESCCSSHH
T ss_pred hcccCcccccccccccc-chhhhhhhhhhhhcccCcccc------cC---cccccchhhhhhhhhccccccc
Confidence 88888877753221111 122222 34567788887765 22 2222334566777777766543
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=7.8e-14 Score=125.62 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=110.2
Q ss_pred cCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhH
Q 012515 199 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 278 (462)
Q Consensus 199 L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 278 (462)
-+.++++++.+...... -...+++|+|++|.++....... +..+.+|++|++++|.+..
T Consensus 13 ~~~l~~s~n~l~~iP~~-------~~~~~~~L~L~~N~l~~~~~~~~-------~~~l~~L~~L~L~~N~i~~------- 71 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-------IPQYTAELRLNNNEFTVLEATGI-------FKKLPQLRKINFSNNKITD------- 71 (220)
T ss_dssp TTEEECCSSCCSSCCSC-------CCTTCSEEECCSSCCCEECCCCC-------GGGCTTCCEEECCSSCCCE-------
T ss_pred CCEeEeCCCCcccCccC-------CCCCCCEEEcCCCcCCccCchhh-------hccCCCCCEEECCCCcCCE-------
Confidence 36888888876553321 13467899999998875422110 1127889999999998876
Q ss_pred HHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEE
Q 012515 279 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 358 (462)
Q Consensus 279 ~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L 358 (462)
.....+..+++|++|+|++|.+....+.. +..+++|++|+|++|.+++..+ ..+ .++++|+.|
T Consensus 72 -i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~--------~~~---~~l~~L~~L 134 (220)
T 2v70_A 72 -IEEGAFEGASGVNEILLTSNRLENVQHKM-----FKGLESLKTLMLRSNRITCVGN--------DSF---IGLSSVRLL 134 (220)
T ss_dssp -ECTTTTTTCTTCCEEECCSSCCCCCCGGG-----GTTCSSCCEEECTTSCCCCBCT--------TSS---TTCTTCSEE
T ss_pred -ECHHHhCCCCCCCEEECCCCccCccCHhH-----hcCCcCCCEEECCCCcCCeECH--------hHc---CCCccCCEE
Confidence 23346677889999999999887754433 3457889999999999886444 333 366889999
Q ss_pred EccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCc
Q 012515 359 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 359 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 395 (462)
+|++|+|+. ..+..+..+++|+.|++++|++..
T Consensus 135 ~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 135 SLYDNQITT----VAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCC----BCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCE----ECHHHhcCCCCCCEEEecCcCCcC
Confidence 999998886 235678888899999999998754
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=6.2e-15 Score=151.32 Aligned_cols=206 Identities=18% Similarity=0.142 Sum_probs=132.4
Q ss_pred hcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCC-------------CChhHHHHHHHHHhcccccCCCcc
Q 012515 194 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-------------LSPSFVEGICRSLCSKRKRIHKIE 260 (462)
Q Consensus 194 ~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~-------------l~~~~~~~l~~~l~~~~~~~~~L~ 260 (462)
..+++|+.|+|++|.+...... ...+++|++|++++|. +....+..+.. +.+|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~-----i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~--------l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSE-----LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY--------FSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHH-----HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH--------HHHHH
T ss_pred ccCccceeccCChhhHHhhHHH-----HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH--------HHhcc
Confidence 3567788888888766543332 3456778888886653 22222222221 45566
Q ss_pred EEe-cCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCc
Q 012515 261 NLS-IDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR 339 (462)
Q Consensus 261 ~L~-l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~ 339 (462)
.|+ ++.|.+.......+...-...+. ...|+.|+|++|.|+. .+. +..+++|+.|+|++|.++. +|
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~------~~~l~~L~~L~Ls~N~l~~-lp---- 479 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH------LEQLLLVTHLDLSHNRLRA-LP---- 479 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC------GGGGTTCCEEECCSSCCCC-CC----
T ss_pred cCcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC------ccccccCcEeecCcccccc-cc----
Confidence 666 44443322100000000011111 1369999999999987 332 2446899999999999983 33
Q ss_pred ccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHH--HHHHhhcCCCCCccE
Q 012515 340 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI--PYFVQASERCNPLVE 417 (462)
Q Consensus 340 ~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~--~~l~~~l~~~~~L~~ 417 (462)
..+. ++++|+.|+|++|+|+. ++ .+..+++|+.|+|++|.|++ + | ..+..+++|+.
T Consensus 480 ----~~~~---~l~~L~~L~Ls~N~l~~-----lp-~l~~l~~L~~L~Ls~N~l~~------~~~p---~~l~~l~~L~~ 537 (567)
T 1dce_A 480 ----PALA---ALRCLEVLQASDNALEN-----VD-GVANLPRLQELLLCNNRLQQ------SAAI---QPLVSCPRLVL 537 (567)
T ss_dssp ----GGGG---GCTTCCEEECCSSCCCC-----CG-GGTTCSSCCEEECCSSCCCS------SSTT---GGGGGCTTCCE
T ss_pred ----hhhh---cCCCCCEEECCCCCCCC-----Cc-ccCCCCCCcEEECCCCCCCC------CCCc---HHHhcCCCCCE
Confidence 5556 56899999999999996 55 89999999999999999987 3 4 56778899999
Q ss_pred EEccCCCCChhhHHHHHHHHhcCCCCCcEEEc
Q 012515 418 LYLENCELSGRGVSQLLDTLSTLRRPPTSLSI 449 (462)
Q Consensus 418 L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~L 449 (462)
|+|++|+++.... .....+.. .++|+.||+
T Consensus 538 L~L~~N~l~~~~~-~~~~l~~~-lp~L~~L~l 567 (567)
T 1dce_A 538 LNLQGNSLCQEEG-IQERLAEM-LPSVSSILT 567 (567)
T ss_dssp EECTTSGGGGSSS-CTTHHHHH-CTTCSEEEC
T ss_pred EEecCCcCCCCcc-HHHHHHHH-CcccCccCC
Confidence 9999999876311 11122223 244888875
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=5.7e-13 Score=118.80 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=116.2
Q ss_pred ccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccC
Q 012515 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 338 (462)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~ 338 (462)
-+.++.+++.+..... ...++|++|++++|.+....... +..+++|++|++++|.+++..+
T Consensus 9 ~~~v~c~~~~l~~~p~-----------~~~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--- 69 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT-----------GIPAQTTYLDLETNSLKSLPNGV-----FDELTSLTQLYLGGNKLQSLPN--- 69 (208)
T ss_dssp TTEEECCSSCCSSCCS-----------CCCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCT---
T ss_pred CCEEEecCCCccCCCC-----------CCCCCCcEEEcCCCccCcCChhh-----hcccccCcEEECCCCccCccCh---
Confidence 3566677766655221 12358999999999998643332 3457899999999999986332
Q ss_pred cccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEE
Q 012515 339 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 418 (462)
Q Consensus 339 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L 418 (462)
.. +.++++|++|++++|+++.. .+..+..+++|++|++++|.|+. ++. ..+..+++|+.|
T Consensus 70 -----~~---~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L 129 (208)
T 2o6s_A 70 -----GV---FNKLTSLTYLNLSTNQLQSL----PNGVFDKLTQLKELALNTNQLQS------LPD--GVFDKLTQLKDL 129 (208)
T ss_dssp -----TT---TTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEE
T ss_pred -----hh---cCCCCCcCEEECCCCcCCcc----CHhHhcCccCCCEEEcCCCcCcc------cCH--hHhccCCcCCEE
Confidence 22 23668999999999999962 23347889999999999999986 332 446778999999
Q ss_pred EccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 419 YLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 419 ~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
++++|+++.. ....+.. .++|++|++++|++.+..+
T Consensus 130 ~l~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 130 RLYQNQLKSV----PDGVFDR-LTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp ECCSSCCSCC----CTTTTTT-CTTCCEEECCSCCBCCCTT
T ss_pred ECCCCcccee----CHHHhcc-CCCccEEEecCCCeecCCC
Confidence 9999999873 2233555 4569999999999987654
No 122
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.40 E-value=1.3e-13 Score=143.79 Aligned_cols=185 Identities=16% Similarity=0.039 Sum_probs=129.8
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChh
Q 012515 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (462)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~ 304 (462)
+++++|+|++|.|+......+.. +++|++|+|++|.+.. .-..+|.++++|++|+|++|+|...
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~--------l~~L~~L~Ls~N~i~~--------i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS--------FPELQVLDLSRCEIQT--------IEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT--------CTTCCEEECTTCCCCE--------ECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC--------CCCCCEEECCCCcCCC--------cChhHhcCCCCCCEEEccCCcCCCC
Confidence 47999999999998654444332 7899999999999876 2234678899999999999999874
Q ss_pred hHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCC
Q 012515 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE 384 (462)
Q Consensus 305 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 384 (462)
.+.. +..+++|++|+|++|.+++..+ ..+.++++|++|+|++|.++... ++..+..+++|+
T Consensus 116 ~~~~-----f~~L~~L~~L~Ls~N~l~~l~~-----------~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~ 176 (635)
T 4g8a_A 116 ALGA-----FSGLSSLQKLVAVETNLASLEN-----------FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLE 176 (635)
T ss_dssp CGGG-----GTTCTTCCEEECTTSCCCCSTT-----------CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCC
T ss_pred CHHH-----hcCCCCCCEEECCCCcCCCCCh-----------hhhhcCcccCeeccccCccccCC---Cchhhccchhhh
Confidence 3332 4567999999999999986333 22347789999999999987531 456788899999
Q ss_pred EEeCCCCCCCchhHHhHHHHHHhhcCCC-CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 385 ILDISDNTIEDDGIRSLIPYFVQASERC-NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 385 ~L~Ls~N~l~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
+|++++|.|+.-....+ ..+... .....++++.|.++.. ...... ...++.+++++|...
T Consensus 177 ~L~L~~N~l~~~~~~~l-----~~L~~l~~~~~~~~ls~n~l~~i-----~~~~~~-~~~~~~l~l~~n~~~ 237 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCTDL-----RVLHQMPLLNLSLDLSLNPMNFI-----QPGAFK-EIRLHKLTLRNNFDS 237 (635)
T ss_dssp EEECCSSCCCEECGGGG-----HHHHTCTTCCCEEECTTCCCCEE-----CTTTTT-TCEEEEEEEESCCSS
T ss_pred hhcccCccccccccccc-----cchhhhhhhhhhhhcccCccccc-----Cccccc-chhhhhhhhhccccc
Confidence 99999999876321111 112111 3456789999998763 112222 123566666666543
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=2e-13 Score=122.95 Aligned_cols=153 Identities=18% Similarity=0.146 Sum_probs=107.3
Q ss_pred CEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHH
Q 012515 200 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV 279 (462)
Q Consensus 200 ~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 279 (462)
+.++++++.+...... -.+++++|++++|.++......+. .+.+|++|++++|.+..
T Consensus 14 ~~v~c~~~~l~~iP~~-------l~~~l~~L~l~~n~i~~i~~~~~~--------~l~~L~~L~Ls~N~i~~-------- 70 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-------LPETITEIRLEQNTIKVIPPGAFS--------PYKKLRRIDLSNNQISE-------- 70 (220)
T ss_dssp TEEECTTSCCSSCCSS-------CCTTCCEEECCSSCCCEECTTSST--------TCTTCCEEECCSSCCCE--------
T ss_pred CEEEcCCCCcCcCCCc-------cCcCCCEEECCCCcCCCcCHhHhh--------CCCCCCEEECCCCcCCC--------
Confidence 4566666654433221 125789999999988864443332 26789999999998876
Q ss_pred HHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEE
Q 012515 280 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (462)
Q Consensus 280 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~ 359 (462)
.....+..+++|++|+|++|.+...... + +..+++|++|+|++|.+++..+ ..+. .+++|+.|+
T Consensus 71 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~----f~~l~~L~~L~L~~N~l~~~~~--------~~~~---~l~~L~~L~ 134 (220)
T 2v9t_B 71 LAPDAFQGLRSLNSLVLYGNKITELPKS-L----FEGLFSLQLLLLNANKINCLRV--------DAFQ---DLHNLNLLS 134 (220)
T ss_dssp ECTTTTTTCSSCCEEECCSSCCCCCCTT-T----TTTCTTCCEEECCSSCCCCCCT--------TTTT---TCTTCCEEE
T ss_pred cCHHHhhCCcCCCEEECCCCcCCccCHh-H----ccCCCCCCEEECCCCCCCEeCH--------HHcC---CCCCCCEEE
Confidence 3355677888999999999988753222 1 3456889999999999886444 3333 668899999
Q ss_pred ccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCc
Q 012515 360 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 360 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 395 (462)
|++|+|+.. .+..+..+++|+.|++++|++..
T Consensus 135 L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 135 LYDNKLQTI----AKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCSCC----CTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCcCCEE----CHHHHhCCCCCCEEEeCCCCcCC
Confidence 999988862 22357778889999999998653
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=2.1e-13 Score=117.24 Aligned_cols=138 Identities=21% Similarity=0.226 Sum_probs=91.4
Q ss_pred CCCCCEEecCCCCCC-hhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCC
Q 012515 288 GRSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 366 (462)
Q Consensus 288 l~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~ 366 (462)
.++|++|++++|.+. +..+.. ...+++|++|++++|.+++. ..+..+++|++|+|++|+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-----~~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~ 84 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-----TAEFVNLEFLSLINVGLISV-------------SNLPKLPKLKKLELSENRIF 84 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-----CGGGGGCCEEEEESSCCCCC-------------SSCCCCSSCCEEEEESCCCC
T ss_pred cccCCEEECCCCCCChhhHHHH-----HHhCCCCCEEeCcCCCCCCh-------------hhhccCCCCCEEECcCCcCc
Confidence 357777777777776 222221 13357788888888887741 33346678888888888887
Q ss_pred cchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcE
Q 012515 367 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTS 446 (462)
Q Consensus 367 ~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~ 446 (462)
+. ++..+..+++|+.|++++|.|++ ++.+ ..+..+++|+.|++++|+++..... ....+.. .++|++
T Consensus 85 ~~----~~~~~~~l~~L~~L~Ls~N~l~~------~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~-l~~L~~ 151 (168)
T 2ell_A 85 GG----LDMLAEKLPNLTHLNLSGNKLKD------ISTL-EPLKKLECLKSLDLFNCEVTNLNDY-RESVFKL-LPQLTY 151 (168)
T ss_dssp SC----CCHHHHHCTTCCEEECBSSSCCS------SGGG-GGGSSCSCCCEEECCSSGGGTSTTH-HHHHHTT-CSSCCE
T ss_pred hH----HHHHHhhCCCCCEEeccCCccCc------chhH-HHHhcCCCCCEEEeeCCcCcchHHH-HHHHHHh-CccCcE
Confidence 62 45556668888888888888876 3211 3456778888888888887763210 1135555 355888
Q ss_pred EEccCCCCCC
Q 012515 447 LSIADNNLGR 456 (462)
Q Consensus 447 L~Ls~N~l~~ 456 (462)
|++++|.+..
T Consensus 152 L~l~~n~~~~ 161 (168)
T 2ell_A 152 LDGYDREDQE 161 (168)
T ss_dssp ETTEETTSCB
T ss_pred ecCCCCChhh
Confidence 8888887754
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=3.7e-14 Score=150.01 Aligned_cols=115 Identities=23% Similarity=0.215 Sum_probs=59.7
Q ss_pred HHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEcc
Q 012515 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLR 361 (462)
Q Consensus 282 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~ 361 (462)
...+..++.|+.|+|++|.+.. .+..+ + .+++|++|+|++|.++ .+| ..+. ++.+|+.|+|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~----~-~l~~L~~L~Ls~N~l~-~lp--------~~~~---~l~~L~~L~Ls 278 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-ISANI----F-KYDFLTRLYLNGNSLT-ELP--------AEIK---NLSNLRVLDLS 278 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-CCGGG----G-GCCSCSCCBCTTSCCS-CCC--------GGGG---GGTTCCEEECT
T ss_pred hhhhccCCCCcEEECCCCCCCC-CChhh----c-CCCCCCEEEeeCCcCc-ccC--------hhhh---CCCCCCEEeCc
Confidence 3444555566666666665543 22222 1 2455666666666655 222 3333 34556666666
Q ss_pred CCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChh
Q 012515 362 GNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR 428 (462)
Q Consensus 362 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~ 428 (462)
+|+|+. ++..+..+++|++|+|++|.|+. +| ..+..+++|+.|+|++|+|+..
T Consensus 279 ~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~------lp---~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 279 HNRLTS-----LPAELGSCFQLKYFYFFDNMVTT------LP---WEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TSCCSS-----CCSSGGGGTTCSEEECCSSCCCC------CC---SSTTSCTTCCCEECTTSCCCSH
T ss_pred CCcCCc-----cChhhcCCCCCCEEECCCCCCCc------cC---hhhhcCCCccEEeCCCCccCCC
Confidence 666653 45555666666666666666554 44 3455556666666666666543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=2e-13 Score=117.40 Aligned_cols=137 Identities=22% Similarity=0.115 Sum_probs=80.4
Q ss_pred CCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccc
Q 012515 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
++|++|++++|.+.. +.++..+..+++|++|++++|.+.+. .. +..+++|++|++++|.+++..+
T Consensus 24 ~~L~~L~l~~n~l~~-------~~i~~~~~~l~~L~~L~l~~n~l~~~--~~-----~~~l~~L~~L~Ls~N~l~~~~~- 88 (168)
T 2ell_A 24 AAVRELVLDNCKSND-------GKIEGLTAEFVNLEFLSLINVGLISV--SN-----LPKLPKLKKLELSENRIFGGLD- 88 (168)
T ss_dssp TSCSEEECCSCBCBT-------TBCSSCCGGGGGCCEEEEESSCCCCC--SS-----CCCCSSCCEEEEESCCCCSCCC-
T ss_pred ccCCEEECCCCCCCh-------hhHHHHHHhCCCCCEEeCcCCCCCCh--hh-----hccCCCCCEEECcCCcCchHHH-
Confidence 445555555555541 01333345556777777777776653 11 3445677777777777765333
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHH-HHhhcCCCCCc
Q 012515 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY-FVQASERCNPL 415 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~-l~~~l~~~~~L 415 (462)
..+. ++++|++|+|++|.+++.. .+..+..+++|+.|++++|.+++. +. ....+..+++|
T Consensus 89 -------~~~~---~l~~L~~L~Ls~N~l~~~~---~~~~l~~l~~L~~L~l~~N~l~~~------~~~~~~~~~~l~~L 149 (168)
T 2ell_A 89 -------MLAE---KLPNLTHLNLSGNKLKDIS---TLEPLKKLECLKSLDLFNCEVTNL------NDYRESVFKLLPQL 149 (168)
T ss_dssp -------HHHH---HCTTCCEEECBSSSCCSSG---GGGGGSSCSCCCEEECCSSGGGTS------TTHHHHHHTTCSSC
T ss_pred -------HHHh---hCCCCCEEeccCCccCcch---hHHHHhcCCCCCEEEeeCCcCcch------HHHHHHHHHhCccC
Confidence 3333 3467777777777777511 114566777777777777776652 21 00245566777
Q ss_pred cEEEccCCCCCh
Q 012515 416 VELYLENCELSG 427 (462)
Q Consensus 416 ~~L~L~~n~l~~ 427 (462)
+.|++++|.+..
T Consensus 150 ~~L~l~~n~~~~ 161 (168)
T 2ell_A 150 TYLDGYDREDQE 161 (168)
T ss_dssp CEETTEETTSCB
T ss_pred cEecCCCCChhh
Confidence 777777777654
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=5e-13 Score=112.40 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=81.2
Q ss_pred CCCCEEecCCCCCC-hhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCc
Q 012515 289 RSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 367 (462)
Q Consensus 289 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~ 367 (462)
++|++|++++|.+. +..+.. ...+++|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~n~i~~ 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-----TDEFEELEFLSTINVGLTSI-------------ANLPKLNKLKKLELSDNRVSG 78 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-----CTTCTTCCEEECTTSCCCCC-------------TTCCCCTTCCEEECCSSCCCS
T ss_pred ccCeEEEccCCcCChhHHHHH-----HhhcCCCcEEECcCCCCCCc-------------hhhhcCCCCCEEECCCCcccc
Confidence 45666777766665 222221 23456777777777777641 223355777888888887775
Q ss_pred chHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEE
Q 012515 368 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSL 447 (462)
Q Consensus 368 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L 447 (462)
. ++..+..+++|++|++++|.+++ ++.. ..+..+++|+.|++++|+++..... ....+.. .++|++|
T Consensus 79 ~----~~~~~~~l~~L~~L~ls~N~i~~------~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~-l~~L~~L 145 (149)
T 2je0_A 79 G----LEVLAEKCPNLTHLNLSGNKIKD------LSTI-EPLKKLENLKSLDLFNCEVTNLNDY-RENVFKL-LPQLTYL 145 (149)
T ss_dssp C----THHHHHHCTTCCEEECTTSCCCS------HHHH-GGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHH-CTTCCEE
T ss_pred h----HHHHhhhCCCCCEEECCCCcCCC------hHHH-HHHhhCCCCCEEeCcCCcccchHHH-HHHHHHH-CCCcccc
Confidence 2 55666667788888888888776 2211 3456667888888888877764220 0124444 3448888
Q ss_pred EccC
Q 012515 448 SIAD 451 (462)
Q Consensus 448 ~Ls~ 451 (462)
|+++
T Consensus 146 ~l~d 149 (149)
T 2je0_A 146 DGYD 149 (149)
T ss_dssp TTBC
T ss_pred cCCC
Confidence 7763
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=8.4e-13 Score=111.03 Aligned_cols=134 Identities=22% Similarity=0.136 Sum_probs=102.3
Q ss_pred CCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccc
Q 012515 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (462)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 335 (462)
..+|++|++++|.+.. +.++..+..+++|++|++++|.+.+. .. ...+++|++|++++|.+++..|
T Consensus 16 ~~~l~~L~l~~n~l~~-------~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-----~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE-------GKLEGLTDEFEELEFLSTINVGLTSI--AN-----LPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGGCSEEECTTCBCBT-------TBCCSCCTTCTTCCEEECTTSCCCCC--TT-----CCCCTTCCEEECCSSCCCSCTH
T ss_pred CccCeEEEccCCcCCh-------hHHHHHHhhcCCCcEEECcCCCCCCc--hh-----hhcCCCCCEEECCCCcccchHH
Confidence 5789999999999882 02455667889999999999999874 21 4567999999999999986433
Q ss_pred ccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCc
Q 012515 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 415 (462)
Q Consensus 336 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 415 (462)
..+. ++++|++|++++|++++. ..+..+..+++|++|++++|.+++.... . ...+..+++|
T Consensus 82 --------~~~~---~l~~L~~L~ls~N~i~~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~---~~~~~~l~~L 142 (149)
T 2je0_A 82 --------VLAE---KCPNLTHLNLSGNKIKDL---STIEPLKKLENLKSLDLFNCEVTNLNDY--R---ENVFKLLPQL 142 (149)
T ss_dssp --------HHHH---HCTTCCEEECTTSCCCSH---HHHGGGGGCTTCCEEECTTCGGGGSTTH--H---HHHHHHCTTC
T ss_pred --------HHhh---hCCCCCEEECCCCcCCCh---HHHHHHhhCCCCCEEeCcCCcccchHHH--H---HHHHHHCCCc
Confidence 4455 457899999999999972 1337789999999999999998863210 0 0235566899
Q ss_pred cEEEccC
Q 012515 416 VELYLEN 422 (462)
Q Consensus 416 ~~L~L~~ 422 (462)
+.|++++
T Consensus 143 ~~L~l~d 149 (149)
T 2je0_A 143 TYLDGYD 149 (149)
T ss_dssp CEETTBC
T ss_pred ccccCCC
Confidence 9998864
No 129
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.34 E-value=6.3e-13 Score=128.34 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=131.5
Q ss_pred hhhhhcCCCcCEEEeccCCChH---HH-H-HHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhcccccCCCccEEe
Q 012515 190 TCQLLRESKLQSLVLRWIRFEE---HV-Q-ALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLS 263 (462)
Q Consensus 190 ~~~l~~~~~L~~L~L~~~~~~~---~~-~-~l~~~l~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~~~~~L~~L~ 263 (462)
..++.++++|++|.+..+.... .+ . .-...+...+++|++|+|++|. +. +.. ...++|++|+
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~----------l~~--~~~~~L~~L~ 199 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS----------IGK--KPRPNLKSLE 199 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB----------CCS--CBCTTCSEEE
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce----------ecc--ccCCCCcEEE
Confidence 3345567788888886543210 00 0 0011224567899999998872 21 011 1267899999
Q ss_pred cCCCCCCCCCCchhHHHHHHhhc--CCCCCCEEecCCC---CCChhhHHHHHHHHh-hCCCCccEEEecCCCCCCccccc
Q 012515 264 IDISSFIENCPSSVVVELVSFLS--SGRSLCSLKLRHC---HLDRDFGRMVFSSLL-EASSSLSILDLSGNSIGGWLSKY 337 (462)
Q Consensus 264 l~~~~~~~~~~~~~~~~l~~~l~--~l~~L~~L~Ls~n---~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~ 337 (462)
+..+.+.. .....+. .+++|++|+|+.+ ...+.++..+...+. ..+++|++|+|++|.+++..+
T Consensus 200 L~~~~l~~--------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~-- 269 (362)
T 2ra8_A 200 IISGGLPD--------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV-- 269 (362)
T ss_dssp EECSBCCH--------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH--
T ss_pred EecCCCCh--------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH--
Confidence 98888765 3334443 6889999998632 222222322322222 236899999999999875222
Q ss_pred CcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccE
Q 012515 338 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 417 (462)
Q Consensus 338 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~ 417 (462)
..+.....+++|++|+|+.|.+++.|+..++..+..+++|+.|++++|.|++.|++++.. .+ ..+
T Consensus 270 ------~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~----al-----g~~ 334 (362)
T 2ra8_A 270 ------EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK----SL-----PMK 334 (362)
T ss_dssp ------HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH----HC-----CSE
T ss_pred ------HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH----Hc-----CCE
Confidence 333322345899999999999999999999988889999999999999999999888863 22 355
Q ss_pred EEccCCC
Q 012515 418 LYLENCE 424 (462)
Q Consensus 418 L~L~~n~ 424 (462)
+++++++
T Consensus 335 ~~~~~~~ 341 (362)
T 2ra8_A 335 IDVSDSQ 341 (362)
T ss_dssp EECCSBC
T ss_pred EEecCCc
Confidence 8888887
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=1.5e-12 Score=112.84 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcch
Q 012515 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 369 (462)
Q Consensus 290 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 369 (462)
+|++|++++|.+++. .. +..+++|++|++++|.+++..+ ..+. .+++|+.|+|++|+|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~-----l~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~L~~N~i~~-- 102 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DG-----FPLLRRLKTLLVNNNRICRIGE--------GLDQ---ALPDLTELILTNNSLVE-- 102 (176)
T ss_dssp CCSEEECCSSCCCEE--CC-----CCCCSSCCEEECCSSCCCEECS--------CHHH---HCTTCCEEECCSCCCCC--
T ss_pred CCCEEECCCCCCCcc--cc-----cccCCCCCEEECCCCcccccCc--------chhh---cCCCCCEEECCCCcCCc--
Confidence 555555555555442 11 2334555555555555543111 1112 23455555555555543
Q ss_pred HHHHHH--HhhcCCCCCEEeCCCCCCC
Q 012515 370 ARDLGS--ALVHIPNLEILDISDNTIE 394 (462)
Q Consensus 370 ~~~l~~--~l~~~~~L~~L~Ls~N~l~ 394 (462)
++. .+..+++|+.|++++|+++
T Consensus 103 ---~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 103 ---LGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ---GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ---chhhHhhhcCCCCCEEEecCCCCC
Confidence 332 4445555555555555544
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.7e-12 Score=114.26 Aligned_cols=132 Identities=18% Similarity=0.166 Sum_probs=95.9
Q ss_pred ccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccC
Q 012515 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 338 (462)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~ 338 (462)
-+.++++++.+... +..+ ...|++|++++|.++...+... +..+++|++|+|++|.+++..+
T Consensus 10 ~~~l~~s~~~l~~i---------p~~~--~~~l~~L~l~~n~i~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--- 71 (192)
T 1w8a_A 10 GTTVDCTGRGLKEI---------PRDI--PLHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEP--- 71 (192)
T ss_dssp TTEEECTTSCCSSC---------CSCC--CTTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCT---
T ss_pred CCEEEcCCCCcCcC---------ccCC--CCCCCEEECCCCcCCccCCccc----cccCCCCCEEECCCCCCCCcCH---
Confidence 47888988888662 2222 2388999999998876443211 2446889999999999887544
Q ss_pred cccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEE
Q 012515 339 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 418 (462)
Q Consensus 339 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L 418 (462)
..+. ++.+|+.|+|++|+|+.. .+..+..+++|++|++++|.|+.. .+ ..+..+++|+.|
T Consensus 72 -----~~~~---~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~-----~~---~~~~~l~~L~~L 131 (192)
T 1w8a_A 72 -----NAFE---GASHIQELQLGENKIKEI----SNKMFLGLHQLKTLNLYDNQISCV-----MP---GSFEHLNSLTSL 131 (192)
T ss_dssp -----TTTT---TCTTCCEEECCSCCCCEE----CSSSSTTCTTCCEEECCSSCCCEE-----CT---TSSTTCTTCCEE
T ss_pred -----hHcC---CcccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCee-----CH---HHhhcCCCCCEE
Confidence 3333 668899999999998862 334577888999999999998862 23 566777889999
Q ss_pred EccCCCCChh
Q 012515 419 YLENCELSGR 428 (462)
Q Consensus 419 ~L~~n~l~~~ 428 (462)
++++|+++..
T Consensus 132 ~L~~N~l~c~ 141 (192)
T 1w8a_A 132 NLASNPFNCN 141 (192)
T ss_dssp ECTTCCBCCS
T ss_pred EeCCCCccCc
Confidence 9999988753
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=1.6e-12 Score=112.72 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=77.0
Q ss_pred CCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCC
Q 012515 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 366 (462)
Q Consensus 287 ~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~ 366 (462)
...+|++|++++|.+... ..+ ....++|++|++++|.+++. ..+.++++|++|+|++|+|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~~----~~~~~~L~~L~Ls~N~l~~~-------------~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--ENL----GATLDQFDAIDFSDNEIRKL-------------DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CCG----GGGTTCCSEEECCSSCCCEE-------------CCCCCCSSCCEEECCSSCCC
T ss_pred CcCCceEEEeeCCCCchh--HHh----hhcCCCCCEEECCCCCCCcc-------------cccccCCCCCEEECCCCccc
Confidence 345666777777666642 111 12223677777777776631 23335567777777777776
Q ss_pred cchHHHHHH-HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCc
Q 012515 367 KADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPT 445 (462)
Q Consensus 367 ~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~ 445 (462)
. +++ .+..+++|+.|++++|.|++ ++.+ ..+..+++|+.|++++|+++..... -...+.. .++|+
T Consensus 78 ~-----~~~~~~~~l~~L~~L~L~~N~i~~------~~~~-~~l~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~-l~~L~ 143 (176)
T 1a9n_A 78 R-----IGEGLDQALPDLTELILTNNSLVE------LGDL-DPLASLKSLTYLCILRNPVTNKKHY-RLYVIYK-VPQVR 143 (176)
T ss_dssp E-----ECSCHHHHCTTCCEEECCSCCCCC------GGGG-GGGGGCTTCCEEECCSSGGGGSTTH-HHHHHHH-CTTCS
T ss_pred c-----cCcchhhcCCCCCEEECCCCcCCc------chhh-HhhhcCCCCCEEEecCCCCCCcHhH-HHHHHHH-CCccc
Confidence 4 332 23667777777777777765 3321 2455567777777777776652111 0112444 24477
Q ss_pred EEEccCCCC
Q 012515 446 SLSIADNNL 454 (462)
Q Consensus 446 ~L~Ls~N~l 454 (462)
+||+++|.+
T Consensus 144 ~Ld~~~n~~ 152 (176)
T 1a9n_A 144 VLDFQKVKL 152 (176)
T ss_dssp EETTEECCH
T ss_pred eeCCCcCCH
Confidence 777777765
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=3.7e-12 Score=112.00 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=96.4
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhH
Q 012515 227 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 306 (462)
Q Consensus 227 L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~ 306 (462)
-++++++++.++ ..+. .. ..++++|++++|.+...... ..+..+++|++|+|++|.++...+
T Consensus 10 ~~~l~~s~~~l~-~ip~--------~~--~~~l~~L~l~~n~i~~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPR--------DI--PLHTTELLLNDNELGRISSD-------GLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TTEEECTTSCCS-SCCS--------CC--CTTCSEEECCSCCCCSBCCS-------CSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CCEEEcCCCCcC-cCcc--------CC--CCCCCEEECCCCcCCccCCc-------cccccCCCCCEEECCCCCCCCcCH
Confidence 378889888885 2221 11 34789999999988762211 136778899999999999987545
Q ss_pred HHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEE
Q 012515 307 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 386 (462)
Q Consensus 307 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 386 (462)
..+ ..+++|++|+|++|.+++..+ . .+.++++|++|+|++|+|+. ..+..+..+++|++|
T Consensus 72 ~~~-----~~l~~L~~L~Ls~N~l~~~~~--------~---~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 72 NAF-----EGASHIQELQLGENKIKEISN--------K---MFLGLHQLKTLNLYDNQISC----VMPGSFEHLNSLTSL 131 (192)
T ss_dssp TTT-----TTCTTCCEEECCSCCCCEECS--------S---SSTTCTTCCEEECCSSCCCE----ECTTSSTTCTTCCEE
T ss_pred hHc-----CCcccCCEEECCCCcCCccCH--------H---HhcCCCCCCEEECCCCcCCe----eCHHHhhcCCCCCEE
Confidence 443 457889999999999886433 2 23366889999999999987 245678888999999
Q ss_pred eCCCCCCCc
Q 012515 387 DISDNTIED 395 (462)
Q Consensus 387 ~Ls~N~l~~ 395 (462)
++++|++..
T Consensus 132 ~L~~N~l~c 140 (192)
T 1w8a_A 132 NLASNPFNC 140 (192)
T ss_dssp ECTTCCBCC
T ss_pred EeCCCCccC
Confidence 999999774
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.23 E-value=1.4e-13 Score=133.14 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=9.5
Q ss_pred hhcCCCCCEEeCCCCCCCc
Q 012515 377 LVHIPNLEILDISDNTIED 395 (462)
Q Consensus 377 l~~~~~L~~L~Ls~N~l~~ 395 (462)
+..+++|+.||+++|.|+.
T Consensus 198 f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 198 FHGASGPVILDISRTRIHS 216 (350)
T ss_dssp TTTEECCSEEECTTSCCCC
T ss_pred hccCcccchhhcCCCCcCc
Confidence 4444555555555555443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=3e-13 Score=119.69 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=99.3
Q ss_pred HHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEc
Q 012515 281 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL 360 (462)
Q Consensus 281 l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L 360 (462)
++..+..+++|++|++++|.+.+ .+ .+ ..+++|++|++++|.++. .| ..+. .+++|++|++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~-----~~l~~L~~L~l~~n~l~~-l~--------~~~~---~~~~L~~L~L 100 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SL-----SGMENLRILSLGRNLIKK-IE--------NLDA---VADTLEELWI 100 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CH-----HHHTTCCEEEEEEEEECS-CS--------SHHH---HHHHCSEEEE
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-cc-----ccCCCCCEEECCCCCccc-cc--------chhh---cCCcCCEEEC
Confidence 34466777899999999988877 22 33 224789999999998874 12 2333 2367899999
Q ss_pred cCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhh------HHHHH
Q 012515 361 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG------VSQLL 434 (462)
Q Consensus 361 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~------~~~l~ 434 (462)
++|++++ ++ .+..+++|+.|++++|.|++ ++.+ ..+..+++|+.|++++|+++... .....
T Consensus 101 ~~N~l~~-----l~-~~~~l~~L~~L~l~~N~i~~------~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 101 SYNQIAS-----LS-GIEKLVNLRVLYMSNNKITN------WGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp EEEECCC-----HH-HHHHHHHSSEEEESEEECCC------HHHH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred cCCcCCc-----CC-ccccCCCCCEEECCCCcCCc------hhHH-HHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 9999986 44 57788899999999999887 3322 34567789999999999886642 11223
Q ss_pred HHHhcCCCCCcEEEccCCCCCCc
Q 012515 435 DTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 435 ~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
..+.. .++|++|| +|.++++
T Consensus 168 ~~~~~-l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 168 EVVKR-LPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HHHHH-CSSCSEEC--CGGGTTT
T ss_pred HHHHh-CCCcEEEC--CcccCHH
Confidence 34566 45599887 6777653
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=2.9e-12 Score=135.54 Aligned_cols=114 Identities=25% Similarity=0.291 Sum_probs=95.4
Q ss_pred hhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCC
Q 012515 314 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 393 (462)
Q Consensus 314 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l 393 (462)
+..+..|+.|+|++|.+.. ++ ..+. ++++|++|+|++|.|+. ++..+..+++|+.|+|++|.|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~-l~--------~~~~---~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN-IS--------ANIF---KYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp --CCCCCCEEECTTSCCSC-CC--------GGGG---GCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCC
T ss_pred hccCCCCcEEECCCCCCCC-CC--------hhhc---CCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcC
Confidence 3557899999999999884 22 4444 45899999999999994 788899999999999999999
Q ss_pred CchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 394 EDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 394 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
+. +| ..+..+++|+.|+|++|.|+. ++..+..+ ++|++|+|++|.|++.++
T Consensus 283 ~~------lp---~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l-~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 283 TS------LP---AELGSCFQLKYFYFFDNMVTT-----LPWEFGNL-CNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SS------CC---SSGGGGTTCSEEECCSSCCCC-----CCSSTTSC-TTCCCEECTTSCCCSHHH
T ss_pred Cc------cC---hhhcCCCCCCEEECCCCCCCc-----cChhhhcC-CCccEEeCCCCccCCCCh
Confidence 85 66 667888999999999999986 66677774 569999999999998665
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=7.8e-12 Score=110.00 Aligned_cols=129 Identities=19% Similarity=0.128 Sum_probs=97.8
Q ss_pred ccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccC
Q 012515 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 338 (462)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~ 338 (462)
-+.++++++.+.... ..+ .+.|++|++++|.++. .+.. +..+++|++|+|++|.+++..+
T Consensus 12 ~~~l~~~~~~l~~ip---------~~~--~~~l~~L~L~~n~i~~-ip~~-----~~~l~~L~~L~Ls~N~i~~i~~--- 71 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLP---------KGI--PRDVTELYLDGNQFTL-VPKE-----LSNYKHLTLIDLSNNRISTLSN--- 71 (193)
T ss_dssp TTEEECTTSCCSSCC---------SCC--CTTCCEEECCSSCCCS-CCGG-----GGGCTTCCEEECCSSCCCCCCT---
T ss_pred CCEEEcCCCCCCcCC---------CCC--CCCCCEEECCCCcCch-hHHH-----hhcccCCCEEECCCCcCCEeCH---
Confidence 467899998887622 211 2589999999999875 3332 3557899999999999986433
Q ss_pred cccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEE
Q 012515 339 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 418 (462)
Q Consensus 339 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L 418 (462)
. .+.++++|++|+|++|+|+.. .+.++..+++|+.|+|++|.|+. ++. ..+..+++|+.|
T Consensus 72 -----~---~f~~l~~L~~L~Ls~N~l~~i----~~~~f~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L 131 (193)
T 2wfh_A 72 -----Q---SFSNMTQLLTLILSYNRLRCI----PPRTFDGLKSLRLLSLHGNDISV------VPE--GAFNDLSALSHL 131 (193)
T ss_dssp -----T---TTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCCCB------CCT--TTTTTCTTCCEE
T ss_pred -----h---HccCCCCCCEEECCCCccCEe----CHHHhCCCCCCCEEECCCCCCCe------eCh--hhhhcCccccEE
Confidence 2 233678999999999999972 33468889999999999999886 442 457778999999
Q ss_pred EccCCCCCh
Q 012515 419 YLENCELSG 427 (462)
Q Consensus 419 ~L~~n~l~~ 427 (462)
++++|++..
T Consensus 132 ~L~~N~~~C 140 (193)
T 2wfh_A 132 AIGANPLYC 140 (193)
T ss_dssp ECCSSCEEC
T ss_pred EeCCCCeec
Confidence 999999764
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.6e-11 Score=106.32 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=103.5
Q ss_pred CCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccc
Q 012515 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
+..+.++++++.+.... . ...++|++|++++|.+....... +..+++|++|++++|.+++..+
T Consensus 7 C~~~~l~~~~~~l~~~p---------~--~~~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~- 69 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVP---------T--GIPSSATRLELESNKLQSLPHGV-----FDKLTQLTKLSLSQNQIQSLPD- 69 (177)
T ss_dssp EETTEEECCSSCCSSCC---------T--TCCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCT-
T ss_pred eCCCEEEecCCCCccCC---------C--CCCCCCcEEEeCCCcccEeCHHH-----hcCcccccEEECCCCcceEeCh-
Confidence 35678999998887622 1 12368999999999988643322 3456899999999999886333
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCcc
Q 012515 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 416 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 416 (462)
..+ .++++|++|++++|+++. ..+..+..+++|++|++++|.|+. ++. ..+..+++|+
T Consensus 70 -------~~~---~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~l~~L~ 127 (177)
T 2o6r_A 70 -------GVF---DKLTKLTILYLHENKLQS----LPNGVFDKLTQLKELALDTNQLKS------VPD--GIFDRLTSLQ 127 (177)
T ss_dssp -------TTT---TTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCC
T ss_pred -------hHc---cCCCccCEEECCCCCccc----cCHHHhhCCcccCEEECcCCcceE------eCH--HHhcCCcccC
Confidence 222 366899999999999986 223356888999999999999886 442 4456778999
Q ss_pred EEEccCCCCChhh--HHHHHHHHhc
Q 012515 417 ELYLENCELSGRG--VSQLLDTLST 439 (462)
Q Consensus 417 ~L~L~~n~l~~~~--~~~l~~~l~~ 439 (462)
.|++++|+++... ...+...+..
T Consensus 128 ~L~l~~N~~~~~~~~l~~l~~~~~~ 152 (177)
T 2o6r_A 128 KIWLHTNPWDCSCPRIDYLSRWLNK 152 (177)
T ss_dssp EEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred EEEecCCCeeccCccHHHHHHHHhh
Confidence 9999999987643 3344444544
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=3.1e-11 Score=106.15 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=90.5
Q ss_pred cEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHH
Q 012515 228 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 307 (462)
Q Consensus 228 ~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~ 307 (462)
+.++++++.++ ..+ ... ..+|++|++++|.+.. ++..+..+++|++|+|++|.|+.....
T Consensus 13 ~~l~~~~~~l~-~ip--------~~~--~~~l~~L~L~~n~i~~---------ip~~~~~l~~L~~L~Ls~N~i~~i~~~ 72 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLP--------KGI--PRDVTELYLDGNQFTL---------VPKELSNYKHLTLIDLSNNRISTLSNQ 72 (193)
T ss_dssp TEEECTTSCCS-SCC--------SCC--CTTCCEEECCSSCCCS---------CCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CEEEcCCCCCC-cCC--------CCC--CCCCCEEECCCCcCch---------hHHHhhcccCCCEEECCCCcCCEeCHh
Confidence 57788888776 221 111 3578889998888875 335677788889999998888764433
Q ss_pred HHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH-HhhcCCCCCEE
Q 012515 308 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEIL 386 (462)
Q Consensus 308 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L 386 (462)
. +..+++|++|+|++|.+++..+ ..+ .++++|+.|+|++|+|+. +++ ++..+++|+.|
T Consensus 73 ~-----f~~l~~L~~L~Ls~N~l~~i~~--------~~f---~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 73 S-----FSNMTQLLTLILSYNRLRCIPP--------RTF---DGLKSLRLLSLHGNDISV-----VPEGAFNDLSALSHL 131 (193)
T ss_dssp T-----TTTCTTCCEEECCSSCCCBCCT--------TTT---TTCTTCCEEECCSSCCCB-----CCTTTTTTCTTCCEE
T ss_pred H-----ccCCCCCCEEECCCCccCEeCH--------HHh---CCCCCCCEEECCCCCCCe-----eChhhhhcCccccEE
Confidence 3 3456888999999988886433 223 366788899999998885 443 57778888999
Q ss_pred eCCCCCCC
Q 012515 387 DISDNTIE 394 (462)
Q Consensus 387 ~Ls~N~l~ 394 (462)
++++|++.
T Consensus 132 ~L~~N~~~ 139 (193)
T 2wfh_A 132 AIGANPLY 139 (193)
T ss_dssp ECCSSCEE
T ss_pred EeCCCCee
Confidence 99988864
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=3.9e-11 Score=103.91 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=58.5
Q ss_pred CCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccc
Q 012515 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
.+|++|++++|.+.. .....+..+++|++|++++|.++...... +..+++|++|++++|.+++..+
T Consensus 28 ~~l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~- 93 (177)
T 2o6r_A 28 SSATRLELESNKLQS--------LPHGVFDKLTQLTKLSLSQNQIQSLPDGV-----FDKLTKLTILYLHENKLQSLPN- 93 (177)
T ss_dssp TTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred CCCcEEEeCCCcccE--------eCHHHhcCcccccEEECCCCcceEeChhH-----ccCCCccCEEECCCCCccccCH-
Confidence 456666666666554 12223455566666666666665422211 2334566666666666654222
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCCc
Q 012515 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~ 395 (462)
..+. .+++|++|++++|+++. +++ .+..+++|++|++++|++..
T Consensus 94 -------~~~~---~l~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 94 -------GVFD---KLTQLKELALDTNQLKS-----VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -------TTTT---TCTTCCEEECCSSCCSC-----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -------HHhh---CCcccCEEECcCCcceE-----eCHHHhcCCcccCEEEecCCCeec
Confidence 1122 44566666666666654 222 24556666666666666554
No 141
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.11 E-value=2.3e-12 Score=124.63 Aligned_cols=221 Identities=13% Similarity=0.052 Sum_probs=144.5
Q ss_pred ccccchHhhhhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccE
Q 012515 182 QNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIEN 261 (462)
Q Consensus 182 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~ 261 (462)
.+....++|..+ .+++++|+|++|.+....... +.++++|++|+|++|.+....... .+..+.++++
T Consensus 17 ~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~----f~~l~~L~~L~Ls~N~i~~~i~~~-------~f~~L~~l~~ 83 (350)
T 4ay9_X 17 QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEAD-------VFSNLPKLHE 83 (350)
T ss_dssp ESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTS----STTCTTCCEEEEECCTTCCEECTT-------SBCSCTTCCE
T ss_pred cCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHH----HcCCCCCCEEECcCCCCCCccChh-------Hhhcchhhhh
Confidence 334444444444 357999999999976543322 457899999999999875322211 1112556554
Q ss_pred -EecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCC-CCCCcccccCc
Q 012515 262 -LSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDR 339 (462)
Q Consensus 262 -L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~ 339 (462)
+.+++|.+.. .....+..+++|++|++++|.+....... .....++..|+++++ .+....+
T Consensus 84 ~l~~~~N~l~~--------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~-----~~~~~~l~~l~l~~~~~i~~l~~---- 146 (350)
T 4ay9_X 84 IRIEKANNLLY--------INPEAFQNLPNLQYLLISNTGIKHLPDVH-----KIHSLQKVLLDIQDNINIHTIER---- 146 (350)
T ss_dssp EEEEEETTCCE--------ECTTSBCCCTTCCEEEEEEECCSSCCCCT-----TCCBSSCEEEEEESCTTCCEECT----
T ss_pred hhcccCCcccc--------cCchhhhhccccccccccccccccCCchh-----hcccchhhhhhhccccccccccc----
Confidence 5666777776 23456788899999999999987633221 123456788998775 4553111
Q ss_pred ccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCC-CCCCchhHHhHHHHHHhhcCCCCCccEE
Q 012515 340 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD-NTIEDDGIRSLIPYFVQASERCNPLVEL 418 (462)
Q Consensus 340 ~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-N~l~~~g~~~l~~~l~~~l~~~~~L~~L 418 (462)
..+... ...++.|+|++|+|+. ++.......+|+++++++ |.++. +|. ..+..+++|+.|
T Consensus 147 ----~~f~~~--~~~l~~L~L~~N~i~~-----i~~~~f~~~~L~~l~l~~~n~l~~------i~~--~~f~~l~~L~~L 207 (350)
T 4ay9_X 147 ----NSFVGL--SFESVILWLNKNGIQE-----IHNSAFNGTQLDELNLSDNNNLEE------LPN--DVFHGASGPVIL 207 (350)
T ss_dssp ----TSSTTS--BSSCEEEECCSSCCCE-----ECTTSSTTEEEEEEECTTCTTCCC------CCT--TTTTTEECCSEE
T ss_pred ----cchhhc--chhhhhhccccccccC-----CChhhccccchhHHhhccCCcccC------CCH--HHhccCcccchh
Confidence 112211 1468999999999996 666555677899999985 66776 553 567788999999
Q ss_pred EccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCCCCCccc
Q 012515 419 YLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 459 (462)
Q Consensus 419 ~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~l~~~~~ 459 (462)
++++|+|+. ++... -..|+.|.+.++.--..+|
T Consensus 208 dLs~N~l~~-----lp~~~---~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 208 DISRTRIHS-----LPSYG---LENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp ECTTSCCCC-----CCSSS---CTTCCEEECTTCTTCCCCC
T ss_pred hcCCCCcCc-----cChhh---hccchHhhhccCCCcCcCC
Confidence 999999987 33221 2348888876664333333
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.09 E-value=1.2e-10 Score=99.17 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=72.8
Q ss_pred CCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCC-CCCcchHHHHHHHhhcCCCCCEEeCCCCC-CCc
Q 012515 318 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDNT-IED 395 (462)
Q Consensus 318 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~ 395 (462)
..|++||+++|.+++ .++..+.++++|++|+|++| .|+|.|++.+...-..+++|++|++++|. |+|
T Consensus 61 ~~L~~LDLs~~~Itd-----------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS-----------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCG-----------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccH-----------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 468888888888876 33444457788999999998 58998877765421124578999999886 999
Q ss_pred hhHHhHHHHHHhhcCCCCCccEEEccCCC-CChhhH--HHHHHHHh
Q 012515 396 DGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGV--SQLLDTLS 438 (462)
Q Consensus 396 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~--~~l~~~l~ 438 (462)
.|+.++. ++++|++|++++|. +++.|. ..+-+++.
T Consensus 130 ~Gl~~L~--------~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP 167 (176)
T 3e4g_A 130 KGIIALH--------HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLP 167 (176)
T ss_dssp HHHHHGG--------GCTTCCEEEEESCTTCCCHHHHHHHHHHHCT
T ss_pred HHHHHHh--------cCCCCCEEECCCCCCCCchHHHHHHHHHHCC
Confidence 8876652 35889999999985 887653 33444443
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1.1e-12 Score=115.93 Aligned_cols=137 Identities=25% Similarity=0.246 Sum_probs=99.9
Q ss_pred hcCCCCCCEEecCCCCCChhhHH------HHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEE
Q 012515 285 LSSGRSLCSLKLRHCHLDRDFGR------MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 358 (462)
Q Consensus 285 l~~l~~L~~L~Ls~n~l~~~~~~------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L 358 (462)
+.....++.++++.+.+.+..+. .+ ..+++|++|++++|.+++ ++ .+. ++++|+.|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~-----~~l~~L~~L~ls~n~l~~---------l~-~~~---~l~~L~~L 75 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATL-----STLKACKHLALSTNNIEK---------IS-SLS---GMENLRIL 75 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHH-----HHTTTCSEEECSEEEESC---------CC-CHH---HHTTCCEE
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHH-----hcCCCCCEEECCCCCCcc---------cc-ccc---cCCCCCEE
Confidence 34445666666666655544332 33 236899999999999885 11 233 45789999
Q ss_pred EccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHh
Q 012515 359 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLS 438 (462)
Q Consensus 359 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 438 (462)
++++|++++ ++..+..+++|+.|++++|.+++ ++. +..+++|+.|++++|+++..+. ...+.
T Consensus 76 ~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~------l~~----~~~l~~L~~L~l~~N~i~~~~~---~~~l~ 137 (198)
T 1ds9_A 76 SLGRNLIKK-----IENLDAVADTLEELWISYNQIAS------LSG----IEKLVNLRVLYMSNNKITNWGE---IDKLA 137 (198)
T ss_dssp EEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCC------HHH----HHHHHHSSEEEESEEECCCHHH---HHHHT
T ss_pred ECCCCCccc-----ccchhhcCCcCCEEECcCCcCCc------CCc----cccCCCCCEEECCCCcCCchhH---HHHHh
Confidence 999999985 66667777899999999999997 443 3344899999999999997422 13566
Q ss_pred cCCCCCcEEEccCCCCCCcc
Q 012515 439 TLRRPPTSLSIADNNLGRFC 458 (462)
Q Consensus 439 ~l~~~L~~L~Ls~N~l~~~~ 458 (462)
. .++|++|++++|++++.+
T Consensus 138 ~-l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 138 A-LDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp T-TTTCSEEEECSCHHHHHH
T ss_pred c-CCCCCEEEecCCcccccc
Confidence 6 456999999999987653
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=6.9e-11 Score=113.10 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=79.1
Q ss_pred CCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcch
Q 012515 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 369 (462)
Q Consensus 290 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 369 (462)
+++.+.+.++ +.......+. ..+++|+.++|++|.++.... ..+.+|.+|+.|+|.+| ++.-+
T Consensus 203 ~~~~l~~~~~-l~~~~~~~l~----~~~~~L~~l~L~~n~i~~I~~-----------~aF~~~~~L~~l~l~~n-i~~I~ 265 (329)
T 3sb4_A 203 DINFLTIEGK-LDNADFKLIR----DYMPNLVSLDISKTNATTIPD-----------FTFAQKKYLLKIKLPHN-LKTIG 265 (329)
T ss_dssp GCSEEEEEEC-CCHHHHHHHH----HHCTTCCEEECTTBCCCEECT-----------TTTTTCTTCCEEECCTT-CCEEC
T ss_pred ccceEEEeee-ecHHHHHHHH----HhcCCCeEEECCCCCcceecH-----------hhhhCCCCCCEEECCcc-cceeh
Confidence 4445555443 3333444332 235788888888888774322 23346788888888887 66421
Q ss_pred HHHHHHHhhcCCCCC-EEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEE
Q 012515 370 ARDLGSALVHIPNLE-ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS 448 (462)
Q Consensus 370 ~~~l~~~l~~~~~L~-~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~ 448 (462)
..+|.+|++|+ .+++.+ .++. ++. ..+..+++|+.+++++|+++..+ ..++.. +.+|+.++
T Consensus 266 ----~~aF~~~~~L~~~l~l~~-~l~~------I~~--~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~-~~~L~~ly 327 (329)
T 3sb4_A 266 ----QRVFSNCGRLAGTLELPA-SVTA------IEF--GAFMGCDNLRYVLATGDKITTLG----DELFGN-GVPSKLIY 327 (329)
T ss_dssp ----TTTTTTCTTCCEEEEECT-TCCE------ECT--TTTTTCTTEEEEEECSSCCCEEC----TTTTCT-TCCCCEEE
T ss_pred ----HHHhhCChhccEEEEEcc-cceE------Ech--hhhhCCccCCEEEeCCCccCccc----hhhhcC-Ccchhhhc
Confidence 23578888888 888887 5544 322 56778888888888888877742 224555 55687775
Q ss_pred c
Q 012515 449 I 449 (462)
Q Consensus 449 L 449 (462)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 3
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=1.4e-10 Score=99.78 Aligned_cols=119 Identities=21% Similarity=0.222 Sum_probs=91.5
Q ss_pred CCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcc
Q 012515 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA 368 (462)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~ 368 (462)
...+.+++++|.+.. .+..+ ..+|++|+|++|.+++..+ ..+. ++.+|++|+|++|+|+.
T Consensus 9 C~~~~l~~s~n~l~~-ip~~~-------~~~l~~L~L~~N~i~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~- 68 (170)
T 3g39_A 9 CSGTTVDCSGKSLAS-VPTGI-------PTTTQVLYLYDNQITKLEP--------GVFD---RLTQLTRLDLDNNQLTV- 68 (170)
T ss_dssp EETTEEECTTSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCT--------TTTT---TCTTCSEEECCSSCCCC-
T ss_pred cCCCEEEeCCCCcCc-cCccC-------CCCCcEEEcCCCcCCccCh--------hhhc---CcccCCEEECCCCCcCc-
Confidence 367899999999987 33322 3789999999999987444 3333 66899999999999996
Q ss_pred hHHHHHH-HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChh--hHHHHHHHHhc
Q 012515 369 DARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLLDTLST 439 (462)
Q Consensus 369 ~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~ 439 (462)
+++ .+..+++|++|+|++|.|+. ++. ..+..+++|+.|+|++|+++.. ....+...+..
T Consensus 69 ----l~~~~f~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~ 130 (170)
T 3g39_A 69 ----LPAGVFDKLTQLTQLSLNDNQLKS------IPR--GAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ 130 (170)
T ss_dssp ----CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred ----cChhhccCCCCCCEEECCCCccCE------eCH--HHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh
Confidence 444 46889999999999999986 432 4577889999999999998765 34556666655
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=6.8e-10 Score=95.37 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=81.8
Q ss_pred CCccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccc
Q 012515 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (462)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 336 (462)
+..+.+++++|.+.... ..+ .+.|++|+|++|.|....+..+ ..+++|++|+|++|.+++..+
T Consensus 9 C~~~~l~~s~n~l~~ip---------~~~--~~~l~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~Ls~N~l~~l~~- 71 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVP---------TGI--PTTTQVLYLYDNQITKLEPGVF-----DRLTQLTRLDLDNNQLTVLPA- 71 (170)
T ss_dssp EETTEEECTTSCCSSCC---------SCC--CTTCSEEECCSSCCCCCCTTTT-----TTCTTCSEEECCSSCCCCCCT-
T ss_pred cCCCEEEeCCCCcCccC---------ccC--CCCCcEEEcCCCcCCccChhhh-----cCcccCCEEECCCCCcCccCh-
Confidence 35688999999887722 222 2689999999999987544433 457899999999999986333
Q ss_pred cCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCCch
Q 012515 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDD 396 (462)
Q Consensus 337 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~ 396 (462)
.. +.++++|++|+|++|+|+. +++ .+..+++|+.|+|++|++...
T Consensus 72 -------~~---f~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 72 -------GV---FDKLTQLTQLSLNDNQLKS-----IPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp -------TT---TTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred -------hh---ccCCCCCCEEECCCCccCE-----eCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 22 2366899999999999986 444 588899999999999998643
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.7e-10 Score=98.25 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=89.9
Q ss_pred CCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcch
Q 012515 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 369 (462)
Q Consensus 290 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 369 (462)
.-+.+++++|.+.. .+..+ .++|++|+|++|.+++..+ ..+. ++++|+.|+|++|+|+.
T Consensus 13 ~~~~l~~~~n~l~~-iP~~~-------~~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~-- 71 (174)
T 2r9u_A 13 DQTLVNCQNIRLAS-VPAGI-------PTDKQRLWLNNNQITKLEP--------GVFD---HLVNLQQLYFNSNKLTA-- 71 (174)
T ss_dssp CSSEEECCSSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCT--------TTTT---TCTTCCEEECCSSCCCC--
T ss_pred CCcEEEeCCCCCCc-cCCCc-------CCCCcEEEeCCCCccccCH--------HHhc---CCcCCCEEECCCCCCCc--
Confidence 45789999999976 44322 3789999999999987444 3333 66899999999999996
Q ss_pred HHHHHH-HhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChh--hHHHHHHHHhc
Q 012515 370 ARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLLDTLST 439 (462)
Q Consensus 370 ~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~ 439 (462)
+++ .+..+++|+.|+|++|.|+. ++. ..+..+++|+.|+|++|++... .+..+...+..
T Consensus 72 ---i~~~~~~~l~~L~~L~L~~N~l~~------l~~--~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~ 133 (174)
T 2r9u_A 72 ---IPTGVFDKLTQLTQLDLNDNHLKS------IPR--GAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVAD 133 (174)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred ---cChhHhCCcchhhEEECCCCccce------eCH--HHhccccCCCEEEeCCCCcccccccHHHHHHHHHh
Confidence 554 46889999999999999986 442 4477889999999999998764 23445555544
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=9.8e-10 Score=94.71 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=80.5
Q ss_pred CccEEecCCCCCCCCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCccccc
Q 012515 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (462)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 337 (462)
.-+.++++++.+.. ++..+ .++|++|+|++|.+....+.. +..+++|++|+|++|.+++..+
T Consensus 13 ~~~~l~~~~n~l~~---------iP~~~--~~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~i~~-- 74 (174)
T 2r9u_A 13 DQTLVNCQNIRLAS---------VPAGI--PTDKQRLWLNNNQITKLEPGV-----FDHLVNLQQLYFNSNKLTAIPT-- 74 (174)
T ss_dssp CSSEEECCSSCCSS---------CCSCC--CTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--
T ss_pred CCcEEEeCCCCCCc---------cCCCc--CCCCcEEEeCCCCccccCHHH-----hcCCcCCCEEECCCCCCCccCh--
Confidence 34789999998876 22222 268999999999998754443 3457899999999999986322
Q ss_pred CcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCCc
Q 012515 338 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIED 395 (462)
Q Consensus 338 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~ 395 (462)
.. +.++++|++|+|++|+|+. +++ .+..+++|+.|+|++|++..
T Consensus 75 ------~~---~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 75 ------GV---FDKLTQLTQLDLNDNHLKS-----IPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ------TT---TTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ------hH---hCCcchhhEEECCCCccce-----eCHHHhccccCCCEEEeCCCCccc
Confidence 22 2366899999999999986 554 48889999999999999874
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.88 E-value=9e-10 Score=93.80 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=65.4
Q ss_pred CCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCC-CCCcccccCcccHHHhhhCCC-CCCCccEEEccCC-CC
Q 012515 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGK-SLQSLRLLNLRGN-NL 365 (462)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~-~l~~L~~L~L~~n-~l 365 (462)
..|++||+++|.+++.++..+ ..+++|++|+|++|. +++..- ..+.... .+++|++|+|++| +|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-----~~~~~L~~L~L~~C~~ItD~gL--------~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-----EGLQYVEKIRLCKCHYIEDGCL--------ERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-----TTCSCCCEEEEESCTTCCHHHH--------HHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCCccHHHHHHh-----cCCCCCCEEEeCCCCccCHHHH--------HHHHhcccccCCCCEEEcCCCCcC
Confidence 367888888888888777765 346788888888885 765221 2222110 0146889999998 59
Q ss_pred CcchHHHHHHHhhcCCCCCEEeCCCCC-CCchhHH
Q 012515 366 CKADARDLGSALVHIPNLEILDISDNT-IEDDGIR 399 (462)
Q Consensus 366 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~ 399 (462)
||.|+.. +.++++|++|++++++ |+|.|+.
T Consensus 128 TD~Gl~~----L~~~~~L~~L~L~~c~~Itd~gl~ 158 (176)
T 3e4g_A 128 TDKGIIA----LHHFRNLKYLFLSDLPGVKEKEKI 158 (176)
T ss_dssp CHHHHHH----GGGCTTCCEEEEESCTTCCCHHHH
T ss_pred CHHHHHH----HhcCCCCCEEECCCCCCCCchHHH
Confidence 9988765 4568899999999886 8887643
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=2.3e-09 Score=102.41 Aligned_cols=86 Identities=12% Similarity=0.183 Sum_probs=67.6
Q ss_pred CCCccEEEccCCCCCcchHHHHH-HHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCcc-EEEccCCCCChhh
Q 012515 352 LQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV-ELYLENCELSGRG 429 (462)
Q Consensus 352 l~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~-~L~L~~n~l~~~~ 429 (462)
+.+|+.|+|++|+++. ++ .+|.+|++|++++|.+| +.. ++. ..+..+.+|+ .+++.+ .++..+
T Consensus 225 ~~~L~~l~L~~n~i~~-----I~~~aF~~~~~L~~l~l~~n-i~~------I~~--~aF~~~~~L~~~l~l~~-~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-----IPDFTFAQKKYLLKIKLPHN-LKT------IGQ--RVFSNCGRLAGTLELPA-SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBCCCE-----ECTTTTTTCTTCCEEECCTT-CCE------ECT--TTTTTCTTCCEEEEECT-TCCEEC
T ss_pred cCCCeEEECCCCCcce-----ecHhhhhCCCCCCEEECCcc-cce------ehH--HHhhCChhccEEEEEcc-cceEEc
Confidence 5799999999999986 43 36889999999999998 654 433 6788889999 999998 666532
Q ss_pred HHHHHHHHhcCCCCCcEEEccCCCCCCc
Q 012515 430 VSQLLDTLSTLRRPPTSLSIADNNLGRF 457 (462)
Q Consensus 430 ~~~l~~~l~~l~~~L~~L~Ls~N~l~~~ 457 (462)
..++.. +.+|+.+++++|.++.-
T Consensus 290 ----~~aF~~-c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 290 ----FGAFMG-CDNLRYVLATGDKITTL 312 (329)
T ss_dssp ----TTTTTT-CTTEEEEEECSSCCCEE
T ss_pred ----hhhhhC-CccCCEEEeCCCccCcc
Confidence 245666 67799999999988653
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=1.9e-08 Score=96.67 Aligned_cols=106 Identities=22% Similarity=0.246 Sum_probs=80.0
Q ss_pred CEEecCCC-CCChhhHHHHHHHHhhCCCCccEEEecC-CCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcch
Q 012515 292 CSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 369 (462)
Q Consensus 292 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 369 (462)
..++.+++ .|.. .+. + ..+++|++|+|++ |.+++..+ ..+. ++.+|+.|+|++|+|+.
T Consensus 11 ~~v~~~~~n~l~~-ip~-l-----~~~~~L~~L~l~~~n~l~~~~~--------~~~~---~l~~L~~L~l~~N~l~~-- 70 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-L-----PGAENLTELYIENQQHLQHLEL--------RDLR---GLGELRNLTIVKSGLRF-- 70 (347)
T ss_dssp SCEECCSSCCCTT-TTT-S-----CSCSCCSEEECCSCSSCCEECG--------GGSC---SCCCCSEEECCSSCCCE--
T ss_pred CEEEcCCCCCCCc-cCC-C-----CCCCCeeEEEccCCCCCCCcCh--------hHhc---cccCCCEEECCCCccce--
Confidence 46788888 8876 444 3 4568899999996 99886433 3333 67899999999999997
Q ss_pred HHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChh
Q 012515 370 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR 428 (462)
Q Consensus 370 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~ 428 (462)
..+.+|.++++|+.|+|++|.|+. +|. ..+..++ |+.|+|.+|++...
T Consensus 71 --~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 71 --VAPDAFHFTPRLSRLNLSFNALES------LSW--KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp --ECTTGGGSCSCCCEEECCSSCCSC------CCS--TTTCSCC-CCEEECCSSCCCCC
T ss_pred --eCHHHhcCCcCCCEEeCCCCccce------eCH--HHcccCC-ceEEEeeCCCccCC
Confidence 234578899999999999999886 442 3444444 99999999998753
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.46 E-value=1e-07 Score=91.56 Aligned_cols=89 Identities=24% Similarity=0.146 Sum_probs=49.8
Q ss_pred hcCCCCCCEEecCC-CCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCC
Q 012515 285 LSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN 363 (462)
Q Consensus 285 l~~l~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n 363 (462)
+..+++|++|+|++ |.|....... +..+++|++|+|++|.|++..+ ..+. ++++|+.|+|++|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~--------~~~~---~l~~L~~L~l~~N 90 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKSGLRFVAP--------DAFH---FTPRLSRLNLSFN 90 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSSCCCEECT--------TGGG---SCSCCCEEECCSS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhH-----hccccCCCEEECCCCccceeCH--------HHhc---CCcCCCEEeCCCC
Confidence 55566666666664 6665533222 2345666677777666665333 2333 4466666777777
Q ss_pred CCCcchHHHHHHHhhcCCCCCEEeCCCCCCC
Q 012515 364 NLCKADARDLGSALVHIPNLEILDISDNTIE 394 (462)
Q Consensus 364 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 394 (462)
+|+. +++.+.....|+.|+|++|.+.
T Consensus 91 ~l~~-----~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALES-----LSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSC-----CCSTTTCSCCCCEEECCSSCCC
T ss_pred ccce-----eCHHHcccCCceEEEeeCCCcc
Confidence 6664 3332222223667777776655
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.41 E-value=3e-08 Score=97.17 Aligned_cols=207 Identities=11% Similarity=0.091 Sum_probs=115.2
Q ss_pred hhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCC
Q 012515 191 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI 270 (462)
Q Consensus 191 ~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~ 270 (462)
...+...+|+++.+..+ +...... .+.+|.+|+.++|++|.++......+. +.+|+.+.+.++ +.
T Consensus 151 ~~aF~~~~L~~i~lp~~-l~~I~~~----aF~~c~~L~~l~l~~n~l~~I~~~aF~---------~~~L~~l~lp~~-l~ 215 (401)
T 4fdw_A 151 DMAFFNSTVQEIVFPST-LEQLKED----IFYYCYNLKKADLSKTKITKLPASTFV---------YAGIEEVLLPVT-LK 215 (401)
T ss_dssp TTTTTTCCCCEEECCTT-CCEECSS----TTTTCTTCCEEECTTSCCSEECTTTTT---------TCCCSEEECCTT-CC
T ss_pred HHhcCCCCceEEEeCCC-ccEehHH----HhhCcccCCeeecCCCcceEechhhEe---------ecccCEEEeCCc-hh
Confidence 33333356777777652 2111111 135677888888887766643333321 466777777644 33
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCC
Q 012515 271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK 350 (462)
Q Consensus 271 ~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~ 350 (462)
.. -..++.++++|+.+++..+ +..-+... +.. ++|+.+.+.+ .++.... ..+.
T Consensus 216 ~I--------~~~aF~~~~~L~~l~l~~~-l~~I~~~a-----F~~-~~L~~i~lp~-~i~~I~~-----------~aF~ 268 (401)
T 4fdw_A 216 EI--------GSQAFLKTSQLKTIEIPEN-VSTIGQEA-----FRE-SGITTVKLPN-GVTNIAS-----------RAFY 268 (401)
T ss_dssp EE--------CTTTTTTCTTCCCEECCTT-CCEECTTT-----TTT-CCCSEEEEET-TCCEECT-----------TTTT
T ss_pred ee--------hhhHhhCCCCCCEEecCCC-ccCccccc-----ccc-CCccEEEeCC-CccEECh-----------hHhh
Confidence 31 2245566778888888764 33222221 233 6778887743 3332111 2333
Q ss_pred CCCCccEEEccCCCCCcchHHHH-HHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhh
Q 012515 351 SLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 429 (462)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 429 (462)
+|.+|+.+++.+|.+.......+ ..+|..|++|+.+++.++ +.. ++. ..+..+.+|+.+.+..+ ++..+
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~------I~~--~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRI------LGQ--GLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCE------ECT--TTTTTCCSCCEEEECTT-CCEEC
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEE------Ehh--hhhcCCCCccEEEECcc-ccEEc
Confidence 66788888888776541111112 235777888888888743 444 222 55677778888888554 44421
Q ss_pred HHHHHHHHhcCCCCCcEEEccCCCCC
Q 012515 430 VSQLLDTLSTLRRPPTSLSIADNNLG 455 (462)
Q Consensus 430 ~~~l~~~l~~l~~~L~~L~Ls~N~l~ 455 (462)
..++.. + +|+.+++++|.+.
T Consensus 339 ----~~aF~~-~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 339 ----FSAFNN-T-GIKEVKVEGTTPP 358 (401)
T ss_dssp ----TTSSSS-S-CCCEEEECCSSCC
T ss_pred ----HHhCCC-C-CCCEEEEcCCCCc
Confidence 124444 4 5888888877654
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.12 E-value=3.6e-07 Score=89.49 Aligned_cols=209 Identities=9% Similarity=0.016 Sum_probs=133.9
Q ss_pred hhhhcCCCcCEEEeccCCChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccccCCCccEEecCCCCCC
Q 012515 191 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI 270 (462)
Q Consensus 191 ~~l~~~~~L~~L~L~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~L~~L~l~~~~~~ 270 (462)
..+.++.+|+.++++.|.+....... +. +.+|+++.|..+ +...+..++.. +.+|+.+++.++ +.
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~~aF~~--------~~~L~~l~l~~~-l~ 238 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGSQAFLK--------TSQLKTIEIPEN-VS 238 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECTTTTTT--------CTTCCCEECCTT-CC
T ss_pred HHhhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehhhHhhC--------CCCCCEEecCCC-cc
Confidence 34558899999999988755433322 22 579999999854 44333333322 778999999864 33
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCC
Q 012515 271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK 350 (462)
Q Consensus 271 ~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~ 350 (462)
..+ ..++.+ .+|+.+.+.+ .+..-+... +..+.+|+.+++.++.+.... ...+.. ..+.
T Consensus 239 ~I~--------~~aF~~-~~L~~i~lp~-~i~~I~~~a-----F~~c~~L~~l~l~~~~~~~~~----~~~I~~--~aF~ 297 (401)
T 4fdw_A 239 TIG--------QEAFRE-SGITTVKLPN-GVTNIASRA-----FYYCPELAEVTTYGSTFNDDP----EAMIHP--YCLE 297 (401)
T ss_dssp EEC--------TTTTTT-CCCSEEEEET-TCCEECTTT-----TTTCTTCCEEEEESSCCCCCT----TCEECT--TTTT
T ss_pred Ccc--------cccccc-CCccEEEeCC-CccEEChhH-----hhCCCCCCEEEeCCccccCCc----ccEECH--HHhh
Confidence 321 123334 6899999954 344322222 456789999999998765100 000111 3344
Q ss_pred CCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhH
Q 012515 351 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 430 (462)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 430 (462)
+|.+|+.++|.. +++.-+ ..+|.+|++|+.+++..| +.. ++. ..+..+ +|+.+++.+|.+....
T Consensus 298 ~c~~L~~l~l~~-~i~~I~----~~aF~~c~~L~~l~lp~~-l~~------I~~--~aF~~~-~L~~l~l~~n~~~~l~- 361 (401)
T 4fdw_A 298 GCPKLARFEIPE-SIRILG----QGLLGGNRKVTQLTIPAN-VTQ------INF--SAFNNT-GIKEVKVEGTTPPQVF- 361 (401)
T ss_dssp TCTTCCEECCCT-TCCEEC----TTTTTTCCSCCEEEECTT-CCE------ECT--TSSSSS-CCCEEEECCSSCCBCC-
T ss_pred CCccCCeEEeCC-ceEEEh----hhhhcCCCCccEEEECcc-ccE------EcH--HhCCCC-CCCEEEEcCCCCcccc-
Confidence 778999999994 566522 236888999999999766 443 322 567887 9999999999866531
Q ss_pred HHHHHHHhcCCCCCcEEEccCCCC
Q 012515 431 SQLLDTLSTLRRPPTSLSIADNNL 454 (462)
Q Consensus 431 ~~l~~~l~~l~~~L~~L~Ls~N~l 454 (462)
..++..++.+++.|.+..|.+
T Consensus 362 ---~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 362 ---EKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ---CSSCCCSCTTCCEEEECGGGH
T ss_pred ---cccccCCCCCccEEEeCHHHH
Confidence 223444445688888876543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=2.6e-05 Score=71.27 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=7.7
Q ss_pred CCCCCEEecCCCCCCh
Q 012515 288 GRSLCSLKLRHCHLDR 303 (462)
Q Consensus 288 l~~L~~L~Ls~n~l~~ 303 (462)
++.|++|+|++|.|.+
T Consensus 169 l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYR 184 (267)
T ss_dssp CTTCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 4445555555554443
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=1.5e-05 Score=72.91 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=20.1
Q ss_pred EecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCC
Q 012515 294 LKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (462)
Q Consensus 294 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 332 (462)
++++.|.. ..+..+......++++|+.|+|++|.+++
T Consensus 148 l~l~~N~~--~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 148 IDVVLNRR--SCMAATLRIIEENIPELLSLNLSNNRLYR 184 (267)
T ss_dssp CCCCTTSH--HHHHHHHHHHHHHCTTCCEEECTTSCCCC
T ss_pred ccccCCHH--HHHHHHHHHHHhhCCCCCEEECCCCCCCC
Confidence 44555532 23333333333456677777777777764
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.02 E-value=0.0043 Score=60.19 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=46.4
Q ss_pred CCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhH
Q 012515 351 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 430 (462)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 430 (462)
.+.+|+.+.+..+ ++.-| ..++..|.+|+.+++..+ ++. ++. .++..|.+|+.+++..+ ++..|
T Consensus 295 ~~~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~------I~~--~aF~~c~~L~~i~lp~~-l~~I~- 358 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIG----EEAFESCTSLVSIDLPYL-VEE------IGK--RSFRGCTSLSNINFPLS-LRKIG- 358 (394)
T ss_dssp TCTTCCEEEECTT-CCEEC----TTTTTTCTTCCEECCCTT-CCE------ECT--TTTTTCTTCCEECCCTT-CCEEC-
T ss_pred ccccccccccccc-cceec----hhhhcCCCCCCEEEeCCc-ccE------EhH--HhccCCCCCCEEEECcc-ccEeh-
Confidence 5567777777654 33211 124667777777777644 332 211 45666777777777655 44422
Q ss_pred HHHHHHHhcCCCCCcEEEccCC
Q 012515 431 SQLLDTLSTLRRPPTSLSIADN 452 (462)
Q Consensus 431 ~~l~~~l~~l~~~L~~L~Ls~N 452 (462)
..++.. +.+|+.+++..+
T Consensus 359 ---~~aF~~-C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 ---ANAFQG-CINLKKVELPKR 376 (394)
T ss_dssp ---TTTBTT-CTTCCEEEEEGG
T ss_pred ---HHHhhC-CCCCCEEEECCC
Confidence 124444 556777777543
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.82 E-value=0.013 Score=47.05 Aligned_cols=37 Identities=30% Similarity=0.344 Sum_probs=24.9
Q ss_pred CCccEEEccCCCCCcchHHHHHH-HhhcCCCCCEEeCCCCCCC
Q 012515 353 QSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIE 394 (462)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~ 394 (462)
.+|+.|+|++|+|+. ++. .|..+++|+.|+|++|++.
T Consensus 31 ~~l~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTA-----LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSS-----CCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCc-----cChhhhhhccccCEEEecCCCee
Confidence 467777777777774 333 4566777777777777754
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.38 E-value=0.017 Score=46.33 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=47.2
Q ss_pred cEEEccCCCCC--cchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChh-hHHH
Q 012515 356 RLLNLRGNNLC--KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR-GVSQ 432 (462)
Q Consensus 356 ~~L~L~~n~l~--~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~ 432 (462)
..++.++++++ . +|..+ -++|++|+|++|.|+. ++. ..+..+++|+.|+|++|.+.-. ....
T Consensus 11 ~~v~Cs~~~L~~~~-----vP~~l--p~~l~~L~Ls~N~l~~------l~~--~~f~~l~~L~~L~L~~NP~~CdC~l~~ 75 (130)
T 3rfe_A 11 TLVDCGRRGLTWAS-----LPTAF--PVDTTELVLTGNNLTA------LPP--GLLDALPALRTAHLGANPWRCDCRLVP 75 (130)
T ss_dssp TEEECCSSCCCTTT-----SCSCC--CTTCSEEECTTSCCSS------CCT--TTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred CEEEeCCCCCcccc-----CCCCC--CcCCCEEECCCCcCCc------cCh--hhhhhccccCEEEecCCCeeccCccHH
Confidence 46778888877 3 44322 2379999999999987 543 5677788999999999987542 2233
Q ss_pred HHHHHhc
Q 012515 433 LLDTLST 439 (462)
Q Consensus 433 l~~~l~~ 439 (462)
+..-+..
T Consensus 76 l~~wl~~ 82 (130)
T 3rfe_A 76 LRAWLAG 82 (130)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 4444443
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.25 E-value=0.055 Score=52.24 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=79.1
Q ss_pred HhhcCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccC
Q 012515 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRG 362 (462)
Q Consensus 283 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~ 362 (462)
.++..+..|+.+.+..+...- +. ..+.++..|+.+.+... ++.... ..+.+|.+|+.+++..
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I-~~-----~aF~~c~~L~~i~l~~~-i~~I~~-----------~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSI-GT-----GAFMNCPALQDIEFSSR-ITELPE-----------SVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEE-CT-----TTTTTCTTCCEEECCTT-CCEECT-----------TTTTTCTTCCEEECCT
T ss_pred ceeeecccccEEeccccccee-cC-----cccccccccccccCCCc-ccccCc-----------eeecCCCCcCEEEeCC
Confidence 345677889999987654321 11 12455788999999643 332111 2344778999999986
Q ss_pred CCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCC
Q 012515 363 NNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 442 (462)
Q Consensus 363 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~ 442 (462)
+ ++.-| ..+|.+|.+|+.+.+..+ ++. ++. .++..|.+|+.+++.++.. ...++.. +.
T Consensus 321 ~-v~~I~----~~aF~~C~~L~~i~ip~s-v~~------I~~--~aF~~C~~L~~i~~~~~~~-------~~~~~~~-~~ 378 (394)
T 4gt6_A 321 G-ITQIL----DDAFAGCEQLERIAIPSS-VTK------IPE--SAFSNCTALNNIEYSGSRS-------QWNAIST-DS 378 (394)
T ss_dssp T-CCEEC----TTTTTTCTTCCEEEECTT-CCB------CCG--GGGTTCTTCCEEEESSCHH-------HHHTCBC-CC
T ss_pred c-ccEeh----HhHhhCCCCCCEEEECcc-cCE------EhH--hHhhCCCCCCEEEECCcee-------ehhhhhc-cC
Confidence 5 44321 236889999999999765 332 221 6788899999999998742 2245555 66
Q ss_pred CCcEEEccCCCC
Q 012515 443 PPTSLSIADNNL 454 (462)
Q Consensus 443 ~L~~L~Ls~N~l 454 (462)
.|+.+.+..|.+
T Consensus 379 ~L~~i~i~~~~~ 390 (394)
T 4gt6_A 379 GLQNLPVAPGSI 390 (394)
T ss_dssp CC----------
T ss_pred CCCEEEeCCCCE
Confidence 799998877755
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.16 E-value=0.14 Score=49.41 Aligned_cols=108 Identities=13% Similarity=0.215 Sum_probs=62.3
Q ss_pred hhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCC
Q 012515 314 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 393 (462)
Q Consensus 314 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l 393 (462)
+..+..|+.+.+..+... . .-..+.++..|+.+.+.. .++.-+ ..+|.+|.+|+.++|..+ +
T Consensus 261 F~~c~~L~~i~lp~~~~~-I-----------~~~aF~~c~~L~~i~l~~-~i~~I~----~~aF~~c~~L~~i~lp~~-v 322 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-I-----------GTGAFMNCPALQDIEFSS-RITELP----ESVFAGCISLKSIDIPEG-I 322 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-E-----------CTTTTTTCTTCCEEECCT-TCCEEC----TTTTTTCTTCCEEECCTT-C
T ss_pred eeecccccEEecccccce-e-----------cCcccccccccccccCCC-cccccC----ceeecCCCCcCEEEeCCc-c
Confidence 344577788877655322 0 012233667788888763 344311 135777888888888654 2
Q ss_pred CchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEccCCC
Q 012515 394 EDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 453 (462)
Q Consensus 394 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~~L~Ls~N~ 453 (462)
+. +.. ..+..|.+|+.+.+..+ ++..| ..++.. +.+|+.+++.+|.
T Consensus 323 ~~------I~~--~aF~~C~~L~~i~ip~s-v~~I~----~~aF~~-C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 323 TQ------ILD--DAFAGCEQLERIAIPSS-VTKIP----ESAFSN-CTALNNIEYSGSR 368 (394)
T ss_dssp CE------ECT--TTTTTCTTCCEEEECTT-CCBCC----GGGGTT-CTTCCEEEESSCH
T ss_pred cE------ehH--hHhhCCCCCCEEEECcc-cCEEh----HhHhhC-CCCCCEEEECCce
Confidence 22 111 56777788888888554 43321 134555 5668888887663
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.06 E-value=0.23 Score=47.77 Aligned_cols=83 Identities=18% Similarity=0.092 Sum_probs=56.5
Q ss_pred hCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCC
Q 012515 315 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 394 (462)
Q Consensus 315 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 394 (462)
..+.+|+.+.+..+ ++.... ..+.+|.+|+.+++..+ ++.-| ..+|.+|.+|+.+++..| +.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~-----------~aF~~c~~L~~i~lp~~-v~~I~----~~aF~~c~~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGE-----------EAFESCTSLVSIDLPYL-VEEIG----KRSFRGCTSLSNINFPLS-LR 355 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECT-----------TTTTTCTTCCEECCCTT-CCEEC----TTTTTTCTTCCEECCCTT-CC
T ss_pred cccccccccccccc-cceech-----------hhhcCCCCCCEEEeCCc-ccEEh----HHhccCCCCCCEEEECcc-cc
Confidence 44577888877654 332111 23447789999999754 55422 246889999999999877 44
Q ss_pred chhHHhHHHHHHhhcCCCCCccEEEccCC
Q 012515 395 DDGIRSLIPYFVQASERCNPLVELYLENC 423 (462)
Q Consensus 395 ~~g~~~l~~~l~~~l~~~~~L~~L~L~~n 423 (462)
. ++. .++..|.+|+.+++..+
T Consensus 356 ~------I~~--~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 356 K------IGA--NAFQGCINLKKVELPKR 376 (394)
T ss_dssp E------ECT--TTBTTCTTCCEEEEEGG
T ss_pred E------ehH--HHhhCCCCCCEEEECCC
Confidence 3 322 67888999999999765
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.09 E-value=0.22 Score=47.51 Aligned_cols=59 Identities=10% Similarity=0.207 Sum_probs=29.6
Q ss_pred CCCCccEEEccCCCCCcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccC
Q 012515 351 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLEN 422 (462)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~ 422 (462)
+|.+|+.+.+.++.++.-+ ..++.+|.+|+.++|..+ +.. ++. .++..|.+|+.+.+..
T Consensus 284 ~c~~L~~i~l~~~~i~~I~----~~aF~~c~~L~~i~lp~~-l~~------I~~--~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLE----PRVFMDCVKLSSVTLPTA-LKT------IQV--YAFKNCKALSTISYPK 342 (379)
T ss_dssp TCTTCCEEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCE------ECT--TTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccceeh----hhhhcCCCCCCEEEcCcc-ccE------EHH--HHhhCCCCCCEEEECC
Confidence 4556666666655554311 124556666666666543 222 111 3455556666665543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=83.03 E-value=0.89 Score=43.23 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=78.4
Q ss_pred cCCCCCCEEecCCCCCChhhHHHHHHHHhhCCCCccEEEecCCCCCCcccccCcccHHHhhhCCCCCCCccEEEccCCCC
Q 012515 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL 365 (462)
Q Consensus 286 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l 365 (462)
..+..|+.+.+..+ +...+... +..+..|+.+.+..+ ++.... ..+.++..|+.+.+..+ +
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~-----f~~~~~L~~i~lp~~-v~~I~~-----------~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGA-----FYGMKALDEIAIPKN-VTSIGS-----------FLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTT-----TTTCSSCCEEEECTT-CCEECT-----------TTTTTCTTCCEEEECCC-C
T ss_pred ccccccceeeeccc-eeEEcccc-----ccCCccceEEEcCCC-ccEeCc-----------cccceeehhcccccccc-c
Confidence 34456666666544 22111111 234577888888665 332111 22336678899888754 4
Q ss_pred CcchHHHHHHHhhcCCCCCEEeCCCCCCCchhHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCc
Q 012515 366 CKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPT 445 (462)
Q Consensus 366 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~L~ 445 (462)
+.-+ ..++..|++|+.+.+.++.+.. ++. ..+..|.+|+.+.+..+ ++..|. .++.. +.+|+
T Consensus 275 ~~i~----~~aF~~c~~L~~i~l~~~~i~~------I~~--~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~-C~~L~ 336 (379)
T 4h09_A 275 KTVP----YLLCSGCSNLTKVVMDNSAIET------LEP--RVFMDCVKLSSVTLPTA-LKTIQV----YAFKN-CKALS 336 (379)
T ss_dssp SEEC----TTTTTTCTTCCEEEECCTTCCE------ECT--TTTTTCTTCCEEECCTT-CCEECT----TTTTT-CTTCC
T ss_pred eecc----ccccccccccccccccccccce------ehh--hhhcCCCCCCEEEcCcc-ccEEHH----HHhhC-CCCCC
Confidence 4321 1357889999999999887664 322 56888899999999754 444221 24555 56688
Q ss_pred EEEccCC
Q 012515 446 SLSIADN 452 (462)
Q Consensus 446 ~L~Ls~N 452 (462)
.+.+..+
T Consensus 337 ~i~ip~~ 343 (379)
T 4h09_A 337 TISYPKS 343 (379)
T ss_dssp CCCCCTT
T ss_pred EEEECCc
Confidence 8877543
No 165
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor suppressor, oxygen sensing, transcription; 1.85A {Homo sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C
Probab=46.50 E-value=19 Score=29.30 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=30.4
Q ss_pred CCccHHHHHHHHHHHHHccCCCCcchhccCchHHHHHHHhc
Q 012515 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTC 43 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l~~~~~~~~~l~~lp~~l~~~l~~~ 43 (462)
|-.||.|.|.+.| ..|++.++ ...-|+|+.|-..|.+.
T Consensus 101 pv~tL~e~cl~~I-r~l~~~~~--~~~leipr~L~~el~~~ 138 (160)
T 1lm8_V 101 PVYTLKERCLQVV-RSLVKPEN--YRRLDIVRSLYEDLEDH 138 (160)
T ss_dssp CCCCHHHHHHHHH-HHHSCGGG--GGGSCSCHHHHHHHHSC
T ss_pred cchhHHHHHHHHH-HHhcChhh--cccccccHHHHHHHHHC
Confidence 4589999999988 77888766 55678999998887753
No 166
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=45.07 E-value=34 Score=20.50 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.6
Q ss_pred CccHHHHHHHHHHHHH
Q 012515 4 APSLISLAALAVKREL 19 (462)
Q Consensus 4 ~p~L~~l~~~~~~~~l 19 (462)
.|||+.||..+|-+++
T Consensus 1 v~sLQHLCR~~I~~~~ 16 (40)
T 2jz3_A 1 VATLQHLCRKTVNGHL 16 (40)
T ss_pred CccHHHHHHHHHHHHc
Confidence 3799999999987776
No 167
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=44.11 E-value=17 Score=23.05 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=19.4
Q ss_pred cchhccCchHHHHHHHhcCChhhhhhh
Q 012515 26 IPYVYELPADLFDILLTCLPPLALQKL 52 (462)
Q Consensus 26 ~~~l~~lp~~l~~~l~~~l~~~~l~~~ 52 (462)
-..+++||.|++..|+..+|+.-+.++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~ 32 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKV 32 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHH
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHH
Confidence 356789999999999999996544333
No 168
>4ajy_V VON hippel-lindau disease tumor suppressor; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 3zrc_C 3zrf_C* 3ztc_C* 3zun_C 4awj_C* 1lqb_C 3ztd_C* 4b95_C* 1lm8_V 1vcb_C 4b9k_C*
Probab=43.65 E-value=21 Score=29.11 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=27.8
Q ss_pred CCccHHHHHHHHHHHHHccCCCCcchhccCchHHHHHHHh
Q 012515 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLT 42 (462)
Q Consensus 3 ~~p~L~~l~~~~~~~~l~~~~~~~~~l~~lp~~l~~~l~~ 42 (462)
|-.||.|.|.+. ..+|++.+ .+..| |+|+.|-..|..
T Consensus 104 Pv~SLke~cl~~-ir~l~~~~-~~~~L-eipr~L~~el~~ 140 (163)
T 4ajy_V 104 PVYTLKERCLQV-VRSLVKPE-NYRRL-DIVRSLYEDLED 140 (163)
T ss_dssp CCCCHHHHHHHH-HHHHSCGG-GGGGS-CSCTHHHHHHHS
T ss_pred cchhHHHHHHHH-HHHhcCHh-Hhhhc-cccHHHHHHHHh
Confidence 448999999964 44587733 66667 999999987765
No 169
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=34.45 E-value=43 Score=30.36 Aligned_cols=69 Identities=22% Similarity=0.221 Sum_probs=41.7
Q ss_pred cchhccCchHHHHHHHhcCChhhhh-hhhhhCCCCCCCCCCCCCccccccccccccCCchHHHHHHHhchhcC--CCCCC
Q 012515 26 IPYVYELPADLFDILLTCLPPLALQ-KLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG--FTDQI 102 (462)
Q Consensus 26 ~~~l~~lp~~l~~~l~~~l~~~~l~-~~~~~~pf~~~~~~~~~~~~~~~~~~~~r~~~~~~~w~~~~~~~~~~--~~~~~ 102 (462)
...+.+||.|++..|+..||+.-+- ++. .+ +++|+.-+.+ ..+|++.+..++.. .....
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~--------------~V-Ck~Wr~l~~~---~~~w~~~~~~~g~~~~~~~~~ 109 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACR--------------LV-CLRWKELVDG---APLWLLKCQQEGLVPEGSADE 109 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGG--------------GT-CHHHHHHHTS---HHHHHHHHHHTTCCCC-----
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHH--------------HH-hHHHHHHhcC---hHHHHHHhhccCcccccccCC
Confidence 4568999999999999999987654 443 11 3444432222 34788777655322 11111
Q ss_pred CCCchHHHHH
Q 012515 103 EPVDWQQRYW 112 (462)
Q Consensus 103 ~~~~~~~~~~ 112 (462)
...+|++.|+
T Consensus 110 ~~~~Wk~~y~ 119 (297)
T 2e31_A 110 ERDHWQQFYF 119 (297)
T ss_dssp CCSCHHHHHH
T ss_pred CCCChhhhhe
Confidence 3567998875
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.41 E-value=60 Score=23.87 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=21.5
Q ss_pred CCCCCccEEEccCC--CCCcchHHHHHHHhhcCCCCCEEeCCCC
Q 012515 350 KSLQSLRLLNLRGN--NLCKADARDLGSALVHIPNLEILDISDN 391 (462)
Q Consensus 350 ~~l~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 391 (462)
.+|..|+.+.+..+ .|.+ .+|.+|.+|+.+.+.+.
T Consensus 17 ~~c~~L~~i~iP~~v~~Ig~-------~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 17 AGNTVIREITVQPNIGLLYD-------GMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTCTTCCCEEECTTSSCCCT-------TSSTTCTTCCCEEECCS
T ss_pred cCCCCCcEEEcCCchheEcH-------HHHhccCCccEEEEcCC
Confidence 36667777777665 3333 24667777777776653
Done!