BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012516
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/469 (47%), Positives = 302/469 (64%), Gaps = 25/469 (5%)
Query: 8 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRDRPIAESLK 63
+ Y+SDYF +L+ A+ELI +G AYVD TPE+I+EYR + NSP+RDR + E+L
Sbjct: 96 VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLA 155
Query: 64 LFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAH 123
LFE MR G EEGKA LR K DM + M D + YRIKF H G+KWCIYP YD+ H
Sbjct: 156 LFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTH 215
Query: 124 CIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRKLNF 182
CI D++E ITHSLCTLEF+ R Y W+L + + P +E+SRLN+ TVMSKRKLN
Sbjct: 216 CISDALEGITHSLCTLEFQNNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL 275
Query: 183 LVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 242
LVT+K+V+GWDDP + T++GLRRRG T+ SI F + IG+++ D+ I + LE IRE+L
Sbjct: 276 LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDL 335
Query: 243 NKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHS 301
N+ APR M V++P+K+VI N + G ++ + P+ +VPFS ++I+ +
Sbjct: 336 NENAPRAMAVIDPVKLVIENYQGEGEMVTM-----PNHPNKPEMGSRQVPFSGEIWIDRA 390
Query: 302 DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEY-------DPSKK 354
DFR + +K Y L GK V LR A+ IK E + D + I I Y DP+
Sbjct: 391 DFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAEGNITTIFCTYDADTLSKDPADG 449
Query: 355 TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAE 414
K KGV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S +VI + +AE
Sbjct: 450 RKVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAE 504
Query: 415 PSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 462
PSL A G FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct: 505 PSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 553
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/469 (47%), Positives = 302/469 (64%), Gaps = 25/469 (5%)
Query: 8 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRDRPIAESLK 63
+ Y+SDYF +L+ A+ELI +G AYVD TPE+I+EYR + NSP+RDR + E+L
Sbjct: 96 VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLA 155
Query: 64 LFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAH 123
LFE MR G EEGKA LR K DM + M D + YRIKF H G+KWCIYP YD+ H
Sbjct: 156 LFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTH 215
Query: 124 CIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRKLNF 182
CI D++E ITHSLCTLEF+ R Y W+L + + P +E+SRLN+ TVMSKRKLN
Sbjct: 216 CISDALEGITHSLCTLEFQGNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL 275
Query: 183 LVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 242
LVT+K+V+GWDDP + T++GLRRRG T+ SI F + IG+++ D+ I + LE IRE+L
Sbjct: 276 LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDL 335
Query: 243 NKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHS 301
N+ APR M V++P+K+VI N + G ++ + P+ +VPFS ++I+ +
Sbjct: 336 NENAPRAMAVIDPVKLVIENYQGEGEMVTM-----PNHPNKPEMGSRQVPFSGEIWIDRA 390
Query: 302 DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEY-------DPSKK 354
DFR + +K Y L GK V LR A+ IK E + D + I I Y DP+
Sbjct: 391 DFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAEGNITTIFCTYDADTLSKDPADG 449
Query: 355 TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAE 414
K KGV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S +VI + +AE
Sbjct: 450 RKVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAE 504
Query: 415 PSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 462
PSL A G FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct: 505 PSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 553
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
pdb|1O0C|A Chain A, Crystal Structure Of L-glutamate And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
Length = 554
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/469 (47%), Positives = 302/469 (64%), Gaps = 25/469 (5%)
Query: 8 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRDRPIAESLK 63
+ Y+SDYF +L+ A+ELI +G AYVD TPE+I+EYR + NSP+RDR + E+L
Sbjct: 97 VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLA 156
Query: 64 LFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAH 123
LFE MR G EEGKA LR K DM + M D + YRIKF H G+KWCIYP YD+ H
Sbjct: 157 LFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTH 216
Query: 124 CIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRKLNF 182
CI D++E ITHSLCTLEF+ R Y W+L + + P +E+SRLN+ TVMSKRKLN
Sbjct: 217 CISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL 276
Query: 183 LVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 242
LVT+K+V+GWDDP + T++GLRRRG T+ SI F + IG+++ D+ I + LE IRE+L
Sbjct: 277 LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDL 336
Query: 243 NKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHS 301
N+ APR M V++P+K+VI N + G ++ + P+ +VPFS ++I+ +
Sbjct: 337 NENAPRAMAVIDPVKLVIENYQGEGEMVTM-----PNHPNKPEMGSRQVPFSGEIWIDRA 391
Query: 302 DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEY-------DPSKK 354
DFR + +K Y L GK V LR A+ IK E + D + I I Y DP+
Sbjct: 392 DFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAEGNITTIFCTYDADTLSKDPADG 450
Query: 355 TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAE 414
K KGV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S +VI + +AE
Sbjct: 451 RKVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAE 505
Query: 415 PSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 462
PSL A G FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct: 506 PSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 554
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed
With Trnagln And Atp At 2.8 Angstroms Resolution
pdb|1GTR|A Chain A, Structural Basis Of Anticodon Loop Recognition By
Glutaminyl-Trna Synthetase
pdb|1GTS|A Chain A, Structural Basis For Transfer Rna Aminoaceylation By
Escherichia Coli Glutaminyl-Trna Synthetase
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1ZJW|A Chain A, Glutaminyl-trna Synthetase Complexed To Glutamine And
2'deoxy A76 Glutamine Trna
Length = 553
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/469 (47%), Positives = 302/469 (64%), Gaps = 25/469 (5%)
Query: 8 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRDRPIAESLK 63
+ Y+SDYF +L+ A+ELI +G AYVD TPE+I+EYR + NSP+RDR + E+L
Sbjct: 96 VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLA 155
Query: 64 LFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAH 123
LFE MR G EEGKA LR K DM + M D + YRIKF H G+KWCIYP YD+ H
Sbjct: 156 LFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTH 215
Query: 124 CIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRKLNF 182
CI D++E ITHSLCTLEF+ R Y W+L + + P +E+SRLN+ TVMSKRKLN
Sbjct: 216 CISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL 275
Query: 183 LVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 242
LVT+K+V+GWDDP + T++GLRRRG T+ SI F + IG+++ D+ I + LE IRE+L
Sbjct: 276 LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDL 335
Query: 243 NKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHS 301
N+ APR M V++P+K+VI N + G ++ + P+ +VPFS ++I+ +
Sbjct: 336 NENAPRAMAVIDPVKLVIENYQGEGEMVTM-----PNHPNKPEMGSRQVPFSGEIWIDRA 390
Query: 302 DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEY-------DPSKK 354
DFR + +K Y L GK V LR A+ IK E + D + I I Y DP+
Sbjct: 391 DFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAEGNITTIFCTYDADTLSKDPADG 449
Query: 355 TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAE 414
K KGV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S +VI + +AE
Sbjct: 450 RKVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAE 504
Query: 415 PSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 462
PSL A G FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct: 505 PSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 553
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/469 (47%), Positives = 301/469 (64%), Gaps = 25/469 (5%)
Query: 8 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRDRPIAESLK 63
+ Y+SDYF +L+ A+ELI +G AYVD TPE+ +EYR + NSP+RDR + E+L
Sbjct: 96 VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQTREYRGTLTQPGKNSPYRDRSVEENLA 155
Query: 64 LFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAH 123
LFE MR G EEGKA LR K DM + M D + YRIKF H G+KWCIYP YD+ H
Sbjct: 156 LFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTH 215
Query: 124 CIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRKLNF 182
CI D++E ITHSLCTLEF+ R Y W+L + + P +E+SRLN+ TVMSKRKLN
Sbjct: 216 CISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL 275
Query: 183 LVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 242
LVT+K+V+GWDDP + T++GLRRRG T+ SI F + IG+++ D+ I + LE IRE+L
Sbjct: 276 LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDL 335
Query: 243 NKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHS 301
N+ APR M V++P+K+VI N + G ++ + P+ +VPFS ++I+ +
Sbjct: 336 NENAPRAMAVIDPVKLVIENYQGEGEMVTM-----PNHPNKPEMGSRQVPFSGEIWIDRA 390
Query: 302 DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEY-------DPSKK 354
DFR + +K Y L GK V LR A+ IK E + D + I I Y DP+
Sbjct: 391 DFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAEGNITTIFCTYDADTLSKDPADG 449
Query: 355 TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAE 414
K KGV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S +VI + +AE
Sbjct: 450 RKVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAE 504
Query: 415 PSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 462
PSL A G FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct: 505 PSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 553
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna- Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
Length = 548
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 298/463 (64%), Gaps = 25/463 (5%)
Query: 8 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRDRPIAESLK 63
+ Y+SDYF +L+ A+ELI +G AYVD TPE+I+EYR + NSP+RDR + E+L
Sbjct: 97 VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLA 156
Query: 64 LFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAH 123
LFE MR G EEGKA LR K DM + M D + YRIKF H G+KWCIYP YD+ H
Sbjct: 157 LFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTH 216
Query: 124 CIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRKLNF 182
CI D++E ITHSLCTLEF+ R Y W+L + + P +E+SRLN+ TVMSKRKLN
Sbjct: 217 CISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL 276
Query: 183 LVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 242
LVT+K+V+GWDDP + T++GLRRRG T+ SI F + IG+++ D+ I + LE IRE+L
Sbjct: 277 LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDL 336
Query: 243 NKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHS 301
N+ APR M V++P+K+VI N + G ++ + P+ +VPFS ++I+ +
Sbjct: 337 NENAPRAMAVIDPVKLVIENYQGEGEMVTM-----PNHPNKPEMGSRQVPFSGEIWIDRA 391
Query: 302 DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEY-------DPSKK 354
DFR + +K Y L GK V LR A+ IK E + D + I I Y DP+
Sbjct: 392 DFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAEGNITTIFCTYDADTLSKDPADG 450
Query: 355 TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAE 414
K KGV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S +VI + +AE
Sbjct: 451 RKVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAE 505
Query: 415 PSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDS 456
PSL A G FQFER GYF +D + ST EK VFNRTV L+D+
Sbjct: 506 PSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDT 548
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase
Length = 539
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/462 (47%), Positives = 297/462 (64%), Gaps = 25/462 (5%)
Query: 8 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRDRPIAESLK 63
+ Y+SDYF +L+ A+ELI +G AYVD TPE+I+EYR + NSP+RDR + E+L
Sbjct: 89 VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLA 148
Query: 64 LFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAH 123
LFE MR G EEGKA LR K DM + M D + YRIKF H G+KWCIYP YD+ H
Sbjct: 149 LFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTH 208
Query: 124 CIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRKLNF 182
CI D++E ITHSLCTLEF+ R Y W+L + + P +E+SRLN+ TVMSKRKLN
Sbjct: 209 CISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL 268
Query: 183 LVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 242
LVT+K+V+GWDDP + T++GLRRRG T+ SI F + IG+++ D+ I + LE IRE+L
Sbjct: 269 LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDL 328
Query: 243 NKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHS 301
N+ APR M V++P+K+VI N + G ++ + P+ +VPFS ++I+ +
Sbjct: 329 NENAPRAMAVIDPVKLVIENYQGEGEMVTM-----PNHPNKPEMGSRQVPFSGEIWIDRA 383
Query: 302 DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEY-------DPSKK 354
DFR + +K Y L GK V LR A+ IK E + D + I I Y DP+
Sbjct: 384 DFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAEGNITTIFCTYDADTLSKDPADG 442
Query: 355 TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAE 414
K KGV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S +VI + +AE
Sbjct: 443 RKVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAE 497
Query: 415 PSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKD 455
PSL A G FQFER GYF +D + ST EK VFNRTV L+D
Sbjct: 498 PSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRD 539
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/464 (47%), Positives = 297/464 (64%), Gaps = 25/464 (5%)
Query: 8 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRDRPIAESLK 63
+ Y+SDYF +L+ A+ELI +G AYVD TPE+I+EYR + NSP+RDR + E+L
Sbjct: 97 VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLA 156
Query: 64 LFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAH 123
LFE MR G EEGKA LR K DM + M D + YRIKF H G+KWCIYP YD+ H
Sbjct: 157 LFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTH 216
Query: 124 CIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRKLNF 182
CI D++E ITHSL TLEF+ R Y W+L + + P +E+SRLN+ TVMSKRKLN
Sbjct: 217 CISDALEGITHSLRTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL 276
Query: 183 LVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 242
LVT+K+V+GWDDP + T++GLRRRG T+ SI F + IG+++ D+ I + LE IRE+L
Sbjct: 277 LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDL 336
Query: 243 NKTAPRTMVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHS 301
N+ APR M V++P+K+VI N + G ++ + P+ +VPFS ++I+ +
Sbjct: 337 NENAPRAMAVIDPVKLVIENYQGEGEMVTM-----PNHPNKPEMGSRQVPFSGEIWIDRA 391
Query: 302 DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEY-------DPSKK 354
DFR + +K Y L GK V LR A+ IK E + D + I I Y DP+
Sbjct: 392 DFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAEGNITTIFCTYDADTLSKDPADG 450
Query: 355 TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAE 414
K KGV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S +VI + +AE
Sbjct: 451 RKVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAE 505
Query: 415 PSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 457
PSL A G FQFER GYF +D + ST EK VFNRTV L+D+
Sbjct: 506 PSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTL 549
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 181/507 (35%), Positives = 254/507 (50%), Gaps = 64/507 (12%)
Query: 10 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMN----SPWRDRPIAESLKLF 65
Y SDYF Y A +LIR+G AYV+ +PEE+ R SP+RDR + E+L L
Sbjct: 138 YASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLL 197
Query: 66 EDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCI 125
M+ G +G+ LR K D+ N + D + YRI PH D+W IYP+YD+ H +
Sbjct: 198 RRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPL 257
Query: 126 VDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRKLNFLV 184
D+IE +THS+C+LEF RA Y WL+ L +P+ +E+ R + T+ SKRKL LV
Sbjct: 258 QDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEYTITSKRKLRELV 317
Query: 185 TNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 244
V GWDDP + TL RR GVT ++ AF IG+SR++ + + E +R++LN
Sbjct: 318 QAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVRDDLNH 377
Query: 245 TAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDA----------------SAFY 288
APR M VL+P+KV +TN++ + L WP D+ A
Sbjct: 378 RAPRVMAVLDPVKVTLTNLDGEKTLSL--PYWPHDVVRDSPDGLVGMPGGGRVAPEEAVR 435
Query: 289 KVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAE 348
VP + +YIE DF K + L PG +V LR A I+ + +D+ + HIRA
Sbjct: 436 DVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADD-FGTDEAGQVTHIRAT 494
Query: 349 YDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLF--------------NSENPAELD 394
+ K GV+HWV+ L E RL+++LF +S PAE +
Sbjct: 495 L-LGEDAKAAGVIHWVS----AERALPAEFRLYDRLFRVPHPEGENADVEDDSAGPAEHE 549
Query: 395 --------------DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-- 438
++ L PDS V+ Y EPS+ R+QFER GYF D
Sbjct: 550 AEPGAGQETAPVSQGFMRYLTPDSLRVL-RGYVEPSVAGDPADTRYQFERQGYFWRDPVE 608
Query: 439 ----DSTPEKLVFNRTVTLKDSFPKGG 461
DS + LVF R +TLKD++ K G
Sbjct: 609 LERVDSREDALVFGRIITLKDTWGKQG 635
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 121/263 (46%), Gaps = 2/263 (0%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
+G E + SD + YE +LI RG AYV PEE +E + + R E
Sbjct: 158 LGVEWDETVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRE 217
Query: 61 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD 120
+L+ + +M ++EG A +R+K D+ + N + D ++ RI HP G ++ +YP +
Sbjct: 218 NLQRWREMFE--MKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMN 275
Query: 121 YAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKL 180
++ + D + +TH L + R +L LG P Y RL + + +S
Sbjct: 276 FSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGA 335
Query: 181 NFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240
+ GWDDP L TL + RRG+ +I + IG+ +DS + ++ R
Sbjct: 336 REGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRS 395
Query: 241 ELNKTAPRTMVVLNPLKVVITNM 263
L + A R +P+K+ + +
Sbjct: 396 ILEEEARRYFFAADPVKLEVVGL 418
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 44/179 (24%)
Query: 22 AVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG-----RIEEG 76
A EL++RG AY +TPEE+++ R++K R R I + E R G R++
Sbjct: 93 AEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPE-EAEERARRGEPHVIRLKVP 151
Query: 77 K-ATLRMKQDMQN----DNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIEN 131
+ T +K +++ DN + D++ K YP+Y A+ + D +
Sbjct: 152 RPGTTEVKDELRGVVVYDNQEIPDVVLL------------KSDGYPTYHLANVVDDHLMG 199
Query: 132 ITHSLCTLEFETRRASYFWL----LHALGLYQPYVWEYSRL-------NVSNTVMSKRK 179
+T + E WL +H L LY+ + WE R N T +SKRK
Sbjct: 200 VTDVIRAEE---------WLVSTPIHVL-LYRAFGWEAPRFYHMPLLRNPDKTKISKRK 248
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 44/179 (24%)
Query: 22 AVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG-----RIEEG 76
A EL++RG AY +TPEE+++ R++K R R I + E R G R++
Sbjct: 93 AEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPE-EAEERARRGEPHVIRLKVP 151
Query: 77 K-ATLRMKQDMQN----DNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIEN 131
+ T +K +++ DN + D++ K YP+Y A+ + D +
Sbjct: 152 RPGTTEVKDELRGVVVYDNQEIPDVVLL------------KSDGYPTYHLANVVDDHLMG 199
Query: 132 ITHSLCTLEFETRRASYFWL----LHALGLYQPYVWEYSRL-------NVSNTVMSKRK 179
+T + E WL +H L LY+ + WE R N T +SKRK
Sbjct: 200 VTDVIRAEE---------WLVSTPIHVL-LYRAFGWEAPRFYHMPLLRNPDKTKISKRK 248
>pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
pdb|4GRI|B Chain B, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
Length = 512
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 16/152 (10%)
Query: 20 ELAVELIRRGHAYVDHQTP---EEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEG 76
+ A LI GHAY + +P E IK+ + P DR E++ N I++
Sbjct: 114 QYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSN--EEVENALIKKI 171
Query: 77 KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI----YPSYDYAHCIVDSIENI 132
K +R K ++ D + D++ RI + + D + P+Y A+ + D + I
Sbjct: 172 KPVVRFKIPLEGDT-SFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKI 230
Query: 133 THSLCTLEFETRRASYFWLLHALGLYQPYVWE 164
TH L E+ + LH L LY+ + W+
Sbjct: 231 THVLRAQEWVSSGP-----LHVL-LYKAFKWK 256
>pdb|3DH7|A Chain A, Structure Of T. Thermophilus Idi-2 In Complex With Ppi
pdb|3DH7|B Chain B, Structure Of T. Thermophilus Idi-2 In Complex With Ppi
pdb|3DH7|C Chain C, Structure Of T. Thermophilus Idi-2 In Complex With Ppi
pdb|3DH7|D Chain D, Structure Of T. Thermophilus Idi-2 In Complex With Ppi
Length = 332
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 219 GIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPD 278
G+G+ I L+R E + K AP+ +++ N + + D R +
Sbjct: 88 GVGMMLGSGRILLERPEALRSFRVRKVAPKALLIAN-----LGLAQLRRYGRDDLLRLVE 142
Query: 279 AQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDD 338
DA AF+ P V +DFR GL + LL FP+ EV
Sbjct: 143 MLEADALAFHVNPLQEAVQRGDTDFR--------GLVERLAELLPLPFPVMVKEVGHGLS 194
Query: 339 KETILHIR 346
+E L +R
Sbjct: 195 REAALALR 202
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec
6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351)
From Thermotoga Maritima At 2.5 A Resolution
Length = 481
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 17 ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 75
E+Y E A L++ G AY + PEEI+E REK ++ E + F D R E
Sbjct: 99 EIYREHAERLVKEGKAYYVYAYPEEIEEXREKLLSEGKAPHYSQEXFEKF-DTPERRREY 157
Query: 76 GKATLRMKQDMQ--NDNFNMYDLIAYRIKFTPHPHAGD----KWCIYPSYDYAHCIVDSI 129
+ LR + ++ + D++ + F GD + P+Y++A + D +
Sbjct: 158 EEKGLRPAVFFKXPRKDYVLNDVVKGEVVFKTGA-IGDFVIXRSNGLPTYNFACVVDDXL 216
Query: 130 ENITHSL 136
ITH +
Sbjct: 217 XEITHVI 223
>pdb|2Q9U|A Chain A, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
pdb|2Q9U|B Chain B, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
Length = 414
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 6 FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEE 40
FK YT + ++ Y V+L +R AY + P++
Sbjct: 380 FKFNYTEELLEQAYNAGVDLGKRAIAYCEKNAPKQ 414
>pdb|3PNT|A Chain A, Crystal Structure Of The Streptococcus Pyogenes Nad+
Glycohydrolase Spn In Complex With Ifs, The Immunity
Factor For Spn
pdb|3PNT|C Chain C, Crystal Structure Of The Streptococcus Pyogenes Nad+
Glycohydrolase Spn In Complex With Ifs, The Immunity
Factor For Spn
Length = 268
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 377 EVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFER 430
E LFEK F D W++D D + + YA+ ++ +AV R ++ R
Sbjct: 13 ERDLFEKKFKEIK----DKWVTDKQADEFIETADKYADKAVQXSAVASRAEYYR 62
>pdb|3U3N|C Chain C, Crystal Structure Of Tablysin-15
pdb|3U3U|C Chain C, Crystal Structure Of The Tablysin-15-Leukotriene E4
Complex
Length = 233
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 3 WEPFKIT--YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
W P ++ Y+ D + EL + +++GH + T E I+ YRE N ++ +A
Sbjct: 102 WLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQKHNITREIIENYRENGPNGDVKELALAI 161
Query: 61 S 61
S
Sbjct: 162 S 162
>pdb|3U3L|C Chain C, Crystal Structure Of The Selenomethionine Derivative Of
Tablysin-15
Length = 233
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 3 WEPFKIT--YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
W P ++ Y+ D + EL + +++GH + T E I+ YRE N ++ +A
Sbjct: 102 WLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQKHNITREIIENYRENGPNGDVKELALAI 161
Query: 61 S 61
S
Sbjct: 162 S 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,701,558
Number of Sequences: 62578
Number of extensions: 628899
Number of successful extensions: 1621
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1523
Number of HSP's gapped (non-prelim): 41
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)