Query 012516
Match_columns 462
No_of_seqs 235 out of 2089
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05347 glutaminyl-tRNA synth 100.0 3E-138 6E-143 1096.7 49.5 451 1-460 91-554 (554)
2 PLN02859 glutamine-tRNA ligase 100.0 3E-138 7E-143 1125.8 45.4 462 1-462 326-788 (788)
3 PTZ00437 glutaminyl-tRNA synth 100.0 2E-135 4E-140 1074.1 46.5 450 1-461 113-564 (574)
4 PRK14703 glutaminyl-tRNA synth 100.0 4E-133 1E-137 1095.6 49.0 453 1-461 93-560 (771)
5 TIGR00440 glnS glutaminyl-tRNA 100.0 4E-131 1E-135 1040.2 45.6 447 1-457 62-522 (522)
6 PLN03233 putative glutamate-tR 100.0 6E-126 1E-130 1000.0 44.7 436 1-458 73-513 (523)
7 KOG1148 Glutaminyl-tRNA synthe 100.0 4E-127 8E-132 988.1 26.7 452 1-460 310-764 (764)
8 PTZ00402 glutamyl-tRNA synthet 100.0 2E-124 4E-129 997.7 47.3 440 1-457 114-555 (601)
9 PLN02907 glutamate-tRNA ligase 100.0 3E-121 6E-126 1004.1 46.9 438 1-455 275-717 (722)
10 KOG1147 Glutamyl-tRNA syntheta 100.0 2E-111 4E-116 865.1 31.4 438 1-456 262-705 (712)
11 PRK04156 gltX glutamyl-tRNA sy 100.0 4E-109 9E-114 881.6 42.5 390 1-442 165-558 (567)
12 TIGR00463 gltX_arch glutamyl-t 100.0 2E-108 5E-113 874.5 41.7 400 1-447 155-557 (560)
13 COG0008 GlnS Glutamyl- and glu 100.0 6E-75 1.3E-79 609.4 -5.3 386 1-437 71-472 (472)
14 PRK12410 glutamylglutaminyl-tR 100.0 1E-58 2.2E-63 482.2 19.4 211 1-249 61-315 (433)
15 PLN02627 glutamyl-tRNA synthet 100.0 2.4E-56 5.3E-61 472.0 20.7 211 1-246 107-372 (535)
16 cd00807 GlnRS_core catalytic c 100.0 3.8E-56 8.2E-61 429.7 17.1 176 1-248 63-238 (238)
17 PRK12558 glutamyl-tRNA synthet 100.0 5.2E-55 1.1E-59 456.4 20.2 211 1-246 64-318 (445)
18 KOG1149 Glutamyl-tRNA syntheta 100.0 9.1E-55 2E-59 439.0 19.4 210 1-245 95-359 (524)
19 PF00749 tRNA-synt_1c: tRNA sy 100.0 2.3E-56 5E-61 451.3 3.7 222 1-223 63-292 (314)
20 cd09287 GluRS_non_core catalyt 100.0 2.4E-54 5.2E-59 418.4 16.3 176 1-248 65-240 (240)
21 PRK01406 gltX glutamyl-tRNA sy 100.0 7.1E-52 1.5E-56 438.8 19.7 211 1-246 66-329 (476)
22 PRK14895 gltX glutamyl-tRNA sy 100.0 7E-52 1.5E-56 437.4 18.9 208 1-247 66-319 (513)
23 PRK05710 glutamyl-Q tRNA(Asp) 100.0 1.3E-51 2.8E-56 411.6 17.5 200 1-246 67-293 (299)
24 TIGR00464 gltX_bact glutamyl-t 100.0 1E-50 2.2E-55 429.7 20.0 213 1-248 63-322 (470)
25 TIGR03838 queuosine_YadB gluta 100.0 8.9E-50 1.9E-54 394.2 15.4 197 1-233 62-270 (272)
26 PF03950 tRNA-synt_1c_C: tRNA 100.0 1.6E-47 3.4E-52 356.5 14.4 171 246-437 1-174 (174)
27 cd00418 GlxRS_core catalytic c 100.0 1.3E-41 2.9E-46 328.1 14.2 142 1-243 63-229 (230)
28 cd00808 GluRS_core catalytic c 100.0 6E-37 1.3E-41 297.8 11.9 125 1-225 63-197 (239)
29 cd00671 ArgRS_core catalytic c 99.3 6.2E-12 1.3E-16 120.8 7.0 123 1-180 81-212 (212)
30 PRK00260 cysS cysteinyl-tRNA s 98.5 1.3E-06 2.7E-11 93.7 12.3 196 1-240 104-315 (463)
31 TIGR00435 cysS cysteinyl-tRNA 98.3 1.4E-05 3E-10 85.8 14.7 198 1-245 102-318 (465)
32 PRK14534 cysS cysteinyl-tRNA s 98.1 1.9E-05 4.1E-10 84.6 11.1 192 1-238 112-327 (481)
33 PRK01611 argS arginyl-tRNA syn 98.1 5.4E-06 1.2E-10 89.8 6.8 169 1-239 193-387 (507)
34 cd00802 class_I_aaRS_core cata 98.1 9.2E-07 2E-11 79.5 0.6 61 119-179 78-143 (143)
35 PRK12418 cysteinyl-tRNA synthe 97.9 2.7E-05 5.8E-10 81.4 8.1 205 1-244 90-314 (384)
36 PRK14536 cysS cysteinyl-tRNA s 97.9 0.00012 2.6E-09 78.8 13.2 193 1-239 114-328 (490)
37 TIGR03447 mycothiol_MshC cyste 97.7 0.00013 2.9E-09 76.7 9.1 210 1-244 117-341 (411)
38 PLN02946 cysteine-tRNA ligase 97.6 0.00027 5.9E-09 77.1 10.4 192 1-238 161-370 (557)
39 PRK11893 methionyl-tRNA synthe 97.6 0.001 2.2E-08 71.9 14.2 89 135-239 258-349 (511)
40 PRK14535 cysS cysteinyl-tRNA s 97.6 0.00081 1.8E-08 74.5 13.2 191 1-237 329-554 (699)
41 COG0215 CysS Cysteinyl-tRNA sy 97.5 0.00027 5.9E-09 74.9 8.0 191 1-236 103-313 (464)
42 PRK00750 lysK lysyl-tRNA synth 97.4 0.00047 1E-08 74.9 9.1 87 129-231 232-321 (510)
43 PF01406 tRNA-synt_1e: tRNA sy 97.4 0.00016 3.4E-09 73.0 5.0 198 1-236 89-297 (300)
44 PTZ00399 cysteinyl-tRNA-synthe 96.8 0.0063 1.4E-07 68.0 10.7 201 1-238 143-362 (651)
45 cd00674 LysRS_core_class_I cat 95.6 0.055 1.2E-06 56.2 8.9 88 129-232 225-317 (353)
46 TIGR00456 argS arginyl-tRNA sy 95.5 0.02 4.4E-07 63.0 6.0 147 94-253 298-460 (566)
47 PRK12451 arginyl-tRNA syntheta 95.4 0.031 6.7E-07 61.6 6.9 80 94-182 294-379 (562)
48 cd00668 Ile_Leu_Val_MetRS_core 95.1 0.4 8.6E-06 48.7 13.2 73 134-222 229-305 (312)
49 TIGR00467 lysS_arch lysyl-tRNA 94.7 0.14 3.1E-06 55.8 9.2 88 130-234 224-317 (515)
50 PLN02286 arginine-tRNA ligase 94.5 0.2 4.4E-06 55.4 10.0 80 94-182 297-386 (576)
51 PF09334 tRNA-synt_1g: tRNA sy 93.9 0.1 2.2E-06 55.0 6.1 100 126-242 278-379 (391)
52 TIGR00398 metG methionyl-tRNA 93.0 0.3 6.4E-06 53.3 7.9 89 136-240 287-378 (530)
53 PLN02610 probable methionyl-tR 92.2 0.36 7.8E-06 55.5 7.6 94 133-242 304-402 (801)
54 PRK12268 methionyl-tRNA synthe 91.9 0.6 1.3E-05 51.3 8.6 87 133-236 290-380 (556)
55 cd00806 TrpRS_core catalytic c 91.7 0.25 5.4E-06 49.7 5.0 50 131-180 137-197 (280)
56 KOG2007 Cysteinyl-tRNA synthet 91.6 1.2 2.5E-05 48.1 9.9 182 4-224 146-339 (586)
57 PRK12267 methionyl-tRNA synthe 91.1 0.69 1.5E-05 51.9 8.2 90 135-240 258-350 (648)
58 PRK00133 metG methionyl-tRNA s 91.0 0.62 1.3E-05 52.5 7.7 75 150-240 304-381 (673)
59 TIGR00395 leuS_arch leucyl-tRN 90.9 0.78 1.7E-05 53.8 8.6 90 132-237 574-667 (938)
60 PLN02224 methionine-tRNA ligas 90.0 1 2.2E-05 50.3 8.2 91 138-244 328-421 (616)
61 cd00812 LeuRS_core catalytic c 89.2 0.36 7.8E-06 49.2 3.7 78 136-231 229-314 (314)
62 PRK12285 tryptophanyl-tRNA syn 88.2 0.45 9.7E-06 49.8 3.6 50 131-180 203-257 (368)
63 PF00749 tRNA-synt_1c: tRNA sy 87.4 0.23 5E-06 50.8 0.9 56 199-258 254-312 (314)
64 COG0008 GlnS Glutamyl- and glu 87.4 0.3 6.5E-06 52.7 1.8 61 198-262 258-322 (472)
65 cd00814 MetRS_core catalytic c 86.4 1.7 3.6E-05 44.4 6.5 79 132-227 237-317 (319)
66 PRK12300 leuS leucyl-tRNA synt 84.3 3.2 6.9E-05 48.5 8.2 90 132-237 531-624 (897)
67 PRK13208 valS valyl-tRNA synth 83.5 3.5 7.5E-05 47.6 8.1 94 133-245 488-586 (800)
68 COG0018 ArgS Arginyl-tRNA synt 82.8 6.4 0.00014 43.8 9.4 80 94-182 305-391 (577)
69 COG0143 MetG Methionyl-tRNA sy 81.8 4.1 8.9E-05 45.0 7.4 104 130-250 288-397 (558)
70 cd02156 nt_trans nucleotidyl t 81.5 0.89 1.9E-05 38.5 1.8 46 134-179 59-105 (105)
71 cd00805 TyrRS_core catalytic c 80.3 4.2 9.1E-05 40.6 6.4 84 129-220 149-234 (269)
72 PF00750 tRNA-synt_1d: tRNA sy 79.3 1.9 4E-05 44.9 3.6 80 94-182 208-296 (354)
73 cd00672 CysRS_core catalytic c 78.1 3.8 8.1E-05 39.6 5.1 50 156-221 155-205 (213)
74 PLN02943 aminoacyl-tRNA ligase 75.7 6.2 0.00013 46.5 6.9 91 134-247 539-638 (958)
75 TIGR00392 ileS isoleucyl-tRNA 74.3 15 0.00033 42.7 9.6 96 131-244 564-664 (861)
76 TIGR00422 valS valyl-tRNA synt 74.2 12 0.00025 43.7 8.6 95 133-245 480-579 (861)
77 PF01921 tRNA-synt_1f: tRNA sy 72.7 6.6 0.00014 41.1 5.5 53 129-181 232-289 (360)
78 PRK06039 ileS isoleucyl-tRNA s 72.6 14 0.00031 43.7 8.9 97 131-244 545-646 (975)
79 cd00818 IleRS_core catalytic c 69.8 12 0.00026 38.6 6.7 35 1-35 100-138 (338)
80 cd00817 ValRS_core catalytic c 69.6 11 0.00024 39.5 6.5 72 134-222 299-375 (382)
81 KOG0436 Methionyl-tRNA synthet 65.6 4.6 0.0001 42.9 2.6 94 132-242 301-396 (578)
82 PRK13354 tyrosyl-tRNA syntheta 59.9 12 0.00025 40.0 4.4 61 118-180 175-236 (410)
83 PRK05729 valS valyl-tRNA synth 59.3 19 0.00041 42.1 6.4 67 161-244 506-573 (874)
84 cd00395 Tyr_Trp_RS_core cataly 57.4 11 0.00024 37.8 3.6 53 130-182 152-206 (273)
85 PLN02882 aminoacyl-tRNA ligase 56.4 31 0.00067 41.7 7.7 68 156-239 594-664 (1159)
86 PF00579 tRNA-synt_1b: tRNA sy 55.4 9.4 0.0002 38.3 2.8 65 115-182 136-206 (292)
87 PLN02959 aminoacyl-tRNA ligase 53.5 45 0.00098 40.0 8.3 86 131-233 671-761 (1084)
88 TIGR00233 trpS tryptophanyl-tR 52.7 6.9 0.00015 40.3 1.3 63 115-180 126-198 (328)
89 PRK08560 tyrosyl-tRNA syntheta 51.6 13 0.00027 38.4 3.0 52 128-179 165-219 (329)
90 PF00133 tRNA-synt_1: tRNA syn 49.4 55 0.0012 36.5 7.8 82 130-227 513-598 (601)
91 PRK05743 ileS isoleucyl-tRNA s 47.8 62 0.0013 38.1 8.2 88 131-236 545-637 (912)
92 PRK14900 valS valyl-tRNA synth 46.8 62 0.0013 38.8 8.1 66 162-244 525-591 (1052)
93 PRK12556 tryptophanyl-tRNA syn 44.7 14 0.00029 38.3 2.0 63 115-180 136-208 (332)
94 PTZ00427 isoleucine-tRNA ligas 44.0 41 0.00089 40.8 6.0 61 168-244 714-775 (1205)
95 COG0525 ValS Valyl-tRNA synthe 39.7 1E+02 0.0023 36.0 8.1 52 168-235 519-570 (877)
96 smart00422 HTH_MERR helix_turn 37.8 36 0.00078 25.9 3.0 59 144-220 12-70 (70)
97 KOG3349 Predicted glycosyltran 37.7 28 0.0006 32.3 2.6 20 19-38 117-136 (170)
98 PRK13804 ileS isoleucyl-tRNA s 34.8 1.1E+02 0.0024 36.3 7.6 85 134-236 586-675 (961)
99 PF08671 SinI: Anti-repressor 33.3 58 0.0012 21.8 2.9 21 199-219 8-28 (30)
100 cd00814 MetRS_core catalytic c 32.8 45 0.00097 34.0 3.6 33 1-33 82-116 (319)
101 cd01105 HTH_GlnR-like Helix-Tu 32.0 1.2E+02 0.0026 24.8 5.4 60 143-221 12-72 (88)
102 PLN02843 isoleucyl-tRNA synthe 29.7 1.2E+02 0.0025 36.2 6.7 52 168-235 605-664 (974)
103 PRK05912 tyrosyl-tRNA syntheta 28.5 2.2E+02 0.0047 30.3 8.0 50 131-180 188-238 (408)
104 PRK12268 methionyl-tRNA synthe 27.0 53 0.0011 36.1 3.1 33 1-33 86-120 (556)
105 cd01282 HTH_MerR-like_sg3 Heli 26.9 3.5E+02 0.0077 23.0 7.7 57 145-220 13-69 (112)
106 COG0162 TyrS Tyrosyl-tRNA synt 26.1 1.1E+02 0.0024 32.6 5.2 79 95-181 149-231 (401)
107 cd04767 HTH_HspR-like_MBC Heli 25.9 1.6E+02 0.0034 26.1 5.3 59 142-220 11-70 (120)
108 cd01110 HTH_SoxR Helix-Turn-He 25.5 3.1E+02 0.0066 24.5 7.3 57 145-220 14-70 (139)
109 TIGR01950 SoxR redox-sensitive 25.5 3.1E+02 0.0068 24.6 7.3 58 144-220 13-70 (142)
110 TIGR00398 metG methionyl-tRNA 25.3 64 0.0014 35.2 3.4 33 1-33 81-115 (530)
111 PRK00390 leuS leucyl-tRNA synt 25.2 1.5E+02 0.0033 34.4 6.5 86 130-237 522-617 (805)
112 cd04769 HTH_MerR2 Helix-Turn-H 25.1 2.8E+02 0.0061 23.7 6.8 61 144-223 12-72 (116)
113 PTZ00419 valyl-tRNA synthetase 24.7 1.3E+02 0.0029 35.7 6.1 37 208-245 640-676 (995)
114 COG1384 LysS Lysyl-tRNA synthe 23.6 66 0.0014 35.3 2.9 53 130-182 228-285 (521)
115 PLN02486 aminoacyl-tRNA ligase 23.2 40 0.00088 35.6 1.2 67 115-181 195-272 (383)
116 PLN02381 valyl-tRNA synthetase 21.9 1.3E+02 0.0029 36.1 5.3 28 208-235 710-737 (1066)
117 cd01111 HTH_MerD Helix-Turn-He 21.8 2.1E+02 0.0045 24.4 5.2 59 145-221 13-71 (107)
118 PF14453 ThiS-like: ThiS-like 21.1 87 0.0019 24.1 2.4 39 394-432 19-57 (57)
119 PF07750 GcrA: GcrA cell cycle 20.9 91 0.002 28.9 2.9 35 190-227 1-36 (162)
120 cd00818 IleRS_core catalytic c 20.6 79 0.0017 32.6 2.8 74 136-226 257-335 (338)
121 PF09278 MerR-DNA-bind: MerR, 20.5 1.6E+02 0.0034 22.2 3.8 24 196-219 3-26 (65)
122 COG1237 Metal-dependent hydrol 20.4 1.1E+02 0.0023 30.8 3.4 28 16-43 209-238 (259)
123 cd00592 HTH_MerR-like Helix-Tu 20.2 4.3E+02 0.0093 21.6 6.7 59 145-222 13-71 (100)
No 1
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-138 Score=1096.67 Aligned_cols=451 Identities=53% Similarity=0.897 Sum_probs=435.3
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC----CCCCCCCCCCChhHHHHHHHHHhCCcccC
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEE 75 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~----~~~~~~~R~~~~ee~l~~~~~m~~G~~~~ 75 (462)
|||+|| ++|+||+||++|+++|++||++|+||+|+||+|||++.|+ +|++|+||++|+||++++|++|++|.+.+
T Consensus 91 LGi~~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~ 170 (554)
T PRK05347 91 LGFDWSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPE 170 (554)
T ss_pred cCCCCCCCceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCC
Confidence 799996 8999999999999999999999999999999999999997 48999999999999999999999999999
Q ss_pred CceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHh
Q 012516 76 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 155 (462)
Q Consensus 76 ~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aL 155 (462)
|++|||+|+||+++|++|+|||+||++.++||++||+|+||||||||||||||+|||||||||+||++|||+|.|||++|
T Consensus 171 g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~al 250 (554)
T PRK05347 171 GSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNL 250 (554)
T ss_pred CcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHH
Q 012516 156 GL-YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 234 (462)
Q Consensus 156 g~-~~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l 234 (462)
|| ..|.++||+|||++|++||||+++++|++|.|.|||||||+||++||||||+||||+|||++||||++++.|+|++|
T Consensus 251 g~~~~P~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L 330 (554)
T PRK05347 251 PIPPHPRQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSML 330 (554)
T ss_pred CCCCCCceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHH
Confidence 96 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCcccc
Q 012516 235 EYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGL 314 (462)
Q Consensus 235 ~~~nr~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l 314 (462)
|++||++|++.|+|+|||+||++|+|+|+++...+++++|+||+ +|++|+|++.|+++||||++||++.++++|+||
T Consensus 331 ~~~nRk~ld~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl 407 (554)
T PRK05347 331 ESCIREDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVPFSRELYIEREDFMEEPPKKYFRL 407 (554)
T ss_pred HHHHHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEEecCCCC---CCcCceEEEEEcCeEEEEhHHhhcccccccccc
Confidence 99999999999999999999999999999877667899999998 789999999999999999999999999999999
Q ss_pred CCCCEEEEeeceeEEEEEEEecCCCCCEEEEEEEEeCC-------CCCCCceeEEeccCCCCCCCCeEEEEEeccccCCC
Q 012516 315 APGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS-------KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNS 387 (462)
Q Consensus 315 ~~g~~V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~-------~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~ 387 (462)
+||++|||+++|+|+|++++ +|++|+|++++|+|+++ +.+|++++|||||+ .++++|+|++||+||++
T Consensus 408 ~~g~~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~----~~~v~~~v~~yd~Lf~~ 482 (554)
T PRK05347 408 VPGKEVRLRNAYVIKCEEVV-KDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSA----AHAVPAEVRLYDRLFTV 482 (554)
T ss_pred CCCCEEEecCEEEEEEEEEE-EcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeec----CCCEeEEEEEeccccCC
Confidence 99999999999999999998 89999999999999876 34688889999997 56899999999999999
Q ss_pred CCCCCcccccccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEEEeecCCCCCCCCC
Q 012516 388 ENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 460 (462)
Q Consensus 388 ~~p~~~~~~~~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~~~~~~~lVfn~~v~Lk~~~~~~ 460 (462)
++|+++++|+++|||+|+.+. .|++|++++++++|++|||||+|||+||.+++++++||||||+||++|+|+
T Consensus 483 ~~p~~~~~~~~~iN~~s~~~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~n~~v~l~d~~~k~ 554 (554)
T PRK05347 483 PNPAAGKDFLDFLNPDSLVIK-QGFVEPSLADAKPEDRFQFEREGYFCADKDSTPGKLVFNRTVGLRDSWAKI 554 (554)
T ss_pred CCCCccccHhHhcCCCceEEE-eEEEcHHHhhCCCCCEEEEEEeeEEEecCCCCCCCeEEEeeeecccccCCC
Confidence 999988999999999999766 899999999999999999999999999988888999999999999999874
No 2
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=3.3e-138 Score=1125.76 Aligned_cols=462 Identities=88% Similarity=1.412 Sum_probs=447.7
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
||++||++||||+||+.+|++|.+||++|+||+|+||+|||+++|+.+.+|+||+++++|++.+|++|++|.+.+|++||
T Consensus 326 LG~~~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vl 405 (788)
T PLN02859 326 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATL 405 (788)
T ss_pred cCCCCCCcccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEE
Confidence 79999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCC
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 160 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P 160 (462)
|+|+||.++|++|+|+|+||+...+||++||+|+||||||||||||||+|||||||||+||++|||+|.|||++|||.+|
T Consensus 406 R~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg~~~P 485 (788)
T PLN02859 406 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLYQP 485 (788)
T ss_pred EEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCc-cccHHHHHHHHH
Q 012516 161 YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS-LIRLDRLEYHIR 239 (462)
Q Consensus 161 ~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~-~~~~~~l~~~nr 239 (462)
.|+||||||++|++||||++.++|++|+|+||||||++||++||||||+|+||+|||++||||++++ .|+++.|++|||
T Consensus 486 ~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~r 565 (788)
T PLN02859 486 YVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHIR 565 (788)
T ss_pred cEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HhhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccccCCCCE
Q 012516 240 EELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKS 319 (462)
Q Consensus 240 ~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~ 319 (462)
+.|++.++|+|||+||++|+|+|+|+...+.+++|+||.||+++++|+|+|+|+++||||++||++.++++|+||+||++
T Consensus 566 ~~l~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~~~~rL~pg~~ 645 (788)
T PLN02859 566 EELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKDYYGLAPGKS 645 (788)
T ss_pred HhhCCcCcchheecCCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhhccccccceecCCCCE
Confidence 99999999999999999999999998877888999999998899999999999999999999999999999999999999
Q ss_pred EEEeeceeEEEEEEEecCCCCCEEEEEEEEeCCCCCCCceeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCccccccc
Q 012516 320 VLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSD 399 (462)
Q Consensus 320 V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~~~~~~~ 399 (462)
|||+|+|+|+|++++.+|++|+|++|+|+||++...|+|++|||||+.+++.++++||+|+||+||++++|++.++|+++
T Consensus 646 V~L~~~~~i~~~~~~~~d~~g~v~el~~~~d~~~~~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~~~p~~~~~~~~~ 725 (788)
T PLN02859 646 VLLRYAFPIKCTDVVLADDNETVVEIRAEYDPEKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENPAELEDWLED 725 (788)
T ss_pred EEEcceeEEEEEEEEEeCCCCCEEEEEEEEccCCCCccCceEEeeecCCCCCCceeEEEEeehhhcCCCCCcccccHHHh
Confidence 99999999999998767889999999999999877889999999998544457899999999999999999988899999
Q ss_pred CCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEEEeecCCCCCCCCCCC
Q 012516 400 LNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKGGK 462 (462)
Q Consensus 400 iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~~~~~~~lVfn~~v~Lk~~~~~~~~ 462 (462)
|||+|+.+..+|++|++++++++|++|||||.|||+||++++++++||||||+||++|+|+.|
T Consensus 726 iNp~S~~v~~~a~~e~~~~~~~~~~~~QfeR~GYF~~D~ds~~~~~vfNr~v~Lkd~~~k~~~ 788 (788)
T PLN02859 726 LNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSYGKGGK 788 (788)
T ss_pred CCCCccEEEeceEEcHhHhhCCCCCeEEEEeeeEEeccCCCCCCCeEEEeeeeccccccccCC
Confidence 999999998789999999999999999999999999999999999999999999999998764
No 3
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-135 Score=1074.11 Aligned_cols=450 Identities=47% Similarity=0.840 Sum_probs=436.5
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
|||+||++++||+|++.||++|.+||++|+||+|+||+|||+++|+.+.+|+||++++||||++|++|++|.+++|++||
T Consensus 113 LGi~~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g~~~~g~~vl 192 (574)
T PTZ00437 113 MGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQGRYAEGEATL 192 (574)
T ss_pred cCCCCCCCCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhcccccCCeEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCC
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 160 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P 160 (462)
|+|+||.++|++|+|||+||+...+||++||+|+||||||||||||||+|||||||||.||.++++.|.||+++|+|..|
T Consensus 193 R~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~~~l~l~~p 272 (574)
T PTZ00437 193 RVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRP 272 (574)
T ss_pred EEeCcCCCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEEeeechhhcccHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHH
Q 012516 161 YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240 (462)
Q Consensus 161 ~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~ 240 (462)
.++|||+||++|++||||++.++|++|+|+|||||||+||++||||||+||||+|||..+|||++++.++|++||++||+
T Consensus 273 ~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 273 HVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred ceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCccc-ccCCcCccccCCCC-
Q 012516 241 ELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFR-MKDSKDYYGLAPGK- 318 (462)
Q Consensus 241 ~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~-~~~~~~f~~l~~g~- 318 (462)
.|++.|+|+|||+||++|+|+|+++. +.+++|+||+ +|++|+|++.|+++||||++||+ +.++++|+||+||+
T Consensus 353 ~ld~~a~R~~~V~dPv~v~I~n~~~~--~~~~~p~hP~---~~~~G~R~i~~~~~iyIe~~D~~~~~~~~~f~rL~~g~~ 427 (574)
T PTZ00437 353 DLDERCERRLMVIDPIKVVVDNWKGE--REFECPNHPR---KPELGSRKVMFTDTFYVDRSDFRTEDNNSKFYGLAPGPR 427 (574)
T ss_pred HhcccCccceEEccceEEEEecCCCc--eEEeccCCCC---CCcCceEEEEEcCeEEEEHHHhhcccccccceecCCCCe
Confidence 99999999999999999999998754 5789999998 79999999999999999999998 67789999999997
Q ss_pred EEEEeeceeEEEEEEEecCCCCCEEEEEEEEeCCCCCCCceeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCcccccc
Q 012516 319 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLS 398 (462)
Q Consensus 319 ~V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~~~~~~ 398 (462)
.|||+++|||+|++++ +|++|+|++++|+++++..+|+|++|||||+ .++++|+||+||+||++++|+.+++|++
T Consensus 428 ~vrL~~~~~i~~~~~~-~d~~g~v~~~~~~~d~~~~~k~k~~IhWvs~----~~~v~~evr~Yd~Lf~~~~p~~~~~~~~ 502 (574)
T PTZ00437 428 VVGLKYSGNVVCKGFE-VDAAGQPSVIHVDIDFERKDKPKTNISWVSA----TACTPVEVRLYNALLKDDRAAIDPEFLK 502 (574)
T ss_pred EEEeccEEEEEEEEEE-ECCCCCEEEEEEEecccccccCCCeEEEeec----CCceeEEEEeccccccCCCCCccccHhh
Confidence 8999999999999998 8899999999999999877889999999998 5789999999999999999998899999
Q ss_pred cCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEEEeecCCCCCCCCCC
Q 012516 399 DLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKGG 461 (462)
Q Consensus 399 ~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~~~~~~~lVfn~~v~Lk~~~~~~~ 461 (462)
+|||+|+.+. .|++|++++++++|++|||||+|||+||.+++++++||||||+||++++|++
T Consensus 503 ~iNp~s~~~~-~g~~E~~~~~~~~~~~~QfeR~Gyf~vD~ds~~~~~vfNr~v~Lkd~~~K~~ 564 (574)
T PTZ00437 503 FIDEDSEVVS-HGYAEKGIENAKHFESVQAERFGYFVVDPDTRPDHLVMNRVLGLREDKEKAT 564 (574)
T ss_pred hCCCCceEEE-EEEEchhhhhCCCCCeEEEEEeEEEEeCCCCCCCCEEEEeeeEccccccccc
Confidence 9999999987 6999999999999999999999999999988899999999999999998854
No 4
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=4.4e-133 Score=1095.60 Aligned_cols=453 Identities=45% Similarity=0.814 Sum_probs=434.5
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC----CCCCCCCCCCChhHHHHHHHHHhCCcccC
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEE 75 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~----~~~~~~~R~~~~ee~l~~~~~m~~G~~~~ 75 (462)
|||+|| .+|+||+||++|+++|++||++|+||+|+||++||++.|+ +|++|+||++|++|++++|++|.+|.+.+
T Consensus 93 LG~~wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~ 172 (771)
T PRK14703 93 LGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPD 172 (771)
T ss_pred cCCCCCCCceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcC
Confidence 799999 5899999999999999999999999999999999999997 79999999999999999999999999999
Q ss_pred CceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHh
Q 012516 76 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 155 (462)
Q Consensus 76 ~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aL 155 (462)
|++|||+|+||.++|++|+|||+||+..++||++||+|++|||||||||||||+|||||||||+||++||++|.|||++|
T Consensus 173 g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l 252 (771)
T PRK14703 173 GAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHL 252 (771)
T ss_pred CCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CC-CCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHH
Q 012516 156 G-LY-QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 233 (462)
Q Consensus 156 g-~~-~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~ 233 (462)
| |. .|.++||+|||+.|++||||++.++|++|.|.||||||+|||++||||||+||||+|||+.||||++++.++|++
T Consensus 253 ~~~~~~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~ 332 (771)
T PRK14703 253 GPWPPRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGV 332 (771)
T ss_pred CCCCCCcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHH
Confidence 5 54 499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccc
Q 012516 234 LEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYG 313 (462)
Q Consensus 234 l~~~nr~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~ 313 (462)
||++||+.|++.++|+|||+||++|+|+|++++..+++++|+||++ .|++|+|+|+|+++||||++||++.++++|+|
T Consensus 333 L~~~~R~~ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~hp~~--~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~ 410 (771)
T PRK14703 333 LEFAIRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPHD--VPKEGSRKVPFTRELYIERDDFSEDPPKGFKR 410 (771)
T ss_pred HHHHHHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEeccCCCCC--CccCceEEEEEcCeEEEEhhHhhccccccccc
Confidence 9999999999999999999999999999998776788999999982 28999999999999999999999999999999
Q ss_pred cCCCCEEEEeeceeEEEEEEEecCCCCCEEEEEEEEeCCC------CCCCceeEEeccCCCCCCCCeEEEEEeccccCCC
Q 012516 314 LAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK------KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNS 387 (462)
Q Consensus 314 l~~g~~V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~------~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~ 387 (462)
|+||++|||+|+|+|+|++++ +|++|+|++++|+|++++ .+|++++|||||+ .++++|+||+||+||++
T Consensus 411 l~~g~~vrL~~~~~i~~~~~~-kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~----~~~v~~~vr~Yd~Lf~~ 485 (771)
T PRK14703 411 LTPGREVRLRGAYIIRCDEVV-RDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSA----KHALPAEVRLYDRLFKV 485 (771)
T ss_pred cCCCCEEEecceEEEEEEEEE-EcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeec----CCCeeEEEEecccccCC
Confidence 999999999999999999998 899999999999998864 3678899999998 57899999999999999
Q ss_pred CCCC-CcccccccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEec-CCCCCceEEEeecCCCCCCCCCC
Q 012516 388 ENPA-ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 461 (462)
Q Consensus 388 ~~p~-~~~~~~~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~-~~~~~~lVfn~~v~Lk~~~~~~~ 461 (462)
++|+ .+++|+++|||+|+.+. .|++|++++++++|++|||||+|||+||. +++++++||||||+||++|+|.+
T Consensus 486 ~~p~~~~~~~~~~lN~~Sl~~~-~g~~e~~~~~~~~~~~~QfeR~Gyf~~D~~d~~~~~~vfNr~v~lkd~~~~~~ 560 (771)
T PRK14703 486 PQPEAADEDFLEFLNPDSLRVA-QGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDALVFNRIITLKDTWGARA 560 (771)
T ss_pred CCCCccccchHhhcCCCCceeE-ccEEcHhHhhCCCCCEEEEEEeEEEEEccCCCCCCCeEEEeecccCccccccc
Confidence 9998 56899999999999998 68999999999999999999999999997 67889999999999999999754
No 5
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=4.5e-131 Score=1040.22 Aligned_cols=447 Identities=50% Similarity=0.838 Sum_probs=430.1
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC----CCCCCCCCCCChhHHHHHHHHHhCCcccC
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEE 75 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~----~~~~~~~R~~~~ee~l~~~~~m~~G~~~~ 75 (462)
||++|| .+++||+|+++|+++|++||++|+||+|+||+|||++.|+ +|++|+||++|+||++++|++|++|++++
T Consensus 62 LG~~~d~~~~~qS~~~~~~~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~ 141 (522)
T TIGR00440 62 LGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKE 141 (522)
T ss_pred cCCCCCCCceEccccHHHHHHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccC
Confidence 799997 7899999999999999999999999999999999999995 78999999999999999999999999999
Q ss_pred CceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHh
Q 012516 76 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 155 (462)
Q Consensus 76 ~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aL 155 (462)
|++|||+|+||.++|++|+|||++|+...+||++||+|+||||||||||||||+|||||||||+||++||++|.||+++|
T Consensus 142 g~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l 221 (522)
T TIGR00440 142 GKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNI 221 (522)
T ss_pred CCeEEEEeCcCCCCCceEeeeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHH
Q 012516 156 GLY-QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 234 (462)
Q Consensus 156 g~~-~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l 234 (462)
+|. .|.+++|+|||++|+|||||++.++|++|+|+||||||++||++||||||+||||+|||++||||++++.+++..|
T Consensus 222 ~~~~~P~~~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l 301 (522)
T TIGR00440 222 HIFPRPAQYEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRL 301 (522)
T ss_pred CccCCCceEEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhH
Confidence 998 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCcccc
Q 012516 235 EYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGL 314 (462)
Q Consensus 235 ~~~nr~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l 314 (462)
+++||+.+++.++|+|||+||+||+|+|++... +.+++|+||+ ++++|+|.++|+++||||++||++.++++|+||
T Consensus 302 ~~~~r~f~~~~~~r~~av~d~~kl~i~~~~~~~-~~~~~p~~p~---~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l 377 (522)
T TIGR00440 302 ESCIREDLNENAPRAMAVIDPVEVVIENLSDEY-ELATIPNHPN---TPEFGERQVPFTNEFYIDRADFREEANKQYKRL 377 (522)
T ss_pred HHHHHHhhhhcCcccccccccceEEEecCCCCc-eEEeccCCCC---ChhHeeEEEEecceeEEEHHHhhcccccccccc
Confidence 999999999999999999999999999987653 4678999998 789999999999999999999999999999999
Q ss_pred CCCCEEEEeeceeEEEEEEEecCCCCCEEEEEEEEeCC-------CCCCCceeEEeccCCCCCCCCeEEEEEeccccCCC
Q 012516 315 APGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS-------KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNS 387 (462)
Q Consensus 315 ~~g~~V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~-------~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~ 387 (462)
+||++|||+++|+|+|++++ +|++|.|++++|+|+++ +.+|++++|||||+ .++++||+|+||+||++
T Consensus 378 ~~g~~vrL~~~~~i~~~~~~-~d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~----~~~~~~evr~yd~Lf~~ 452 (522)
T TIGR00440 378 VLGKEVRLRNAYVIKAERVE-KDAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSA----SSKYPTETRLYDRLFKV 452 (522)
T ss_pred CCCCEEEeCCEEEEEEEEEE-ecCCCCEEEEEEEEccccccCCccccccCCcEEEeeec----CCCeeEEEEecccccCC
Confidence 99999999999999999998 88999999999999875 34788899999998 57899999999999999
Q ss_pred CCCCCcccccccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEec-CCCCCceEEEeecCCCCCC
Q 012516 388 ENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSF 457 (462)
Q Consensus 388 ~~p~~~~~~~~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~-~~~~~~lVfn~~v~Lk~~~ 457 (462)
++|+++++|++++||+|+.+. +|++|++++++++|++|||||+|||+||+ +++++++||||||+||++|
T Consensus 453 ~~p~~~d~~~~~~np~s~~~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~v~Nr~v~l~d~~ 522 (522)
T TIGR00440 453 PNPGAPDDFLSVINPESLVIK-QGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVVFNRTVSLKDAT 522 (522)
T ss_pred CCCCccccHhhhCCCCceEEE-EEEEchhHhhCCCCCEEEEEEeEEEEEccCCCCCCCeEEEeeeecCCCC
Confidence 999999999999999999877 79999999999999999999999999995 6778999999999999987
No 6
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=6.2e-126 Score=1000.01 Aligned_cols=436 Identities=30% Similarity=0.481 Sum_probs=408.6
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
|||+||++|+||+||++|+++|++||++|+||+|+||+|||++.|+++++|+||+++++|++++|++|++|.++++++++
T Consensus 73 LGl~wD~~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~l 152 (523)
T PLN03233 73 IEIKPDSVSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCL 152 (523)
T ss_pred hCCCCCCCccccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCC
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 160 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P 160 (462)
|+|+||+++|++|+|||++|++.++||++||+|++|||||||||||||+|||||||||+||++|||+|.|||++|||++|
T Consensus 153 R~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P 232 (523)
T PLN03233 153 RAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRP 232 (523)
T ss_pred EEeCcccCCCCCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHH
Q 012516 161 YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240 (462)
Q Consensus 161 ~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~ 240 (462)
.|+||+|||+.|+|||||++.++|++|.|+||||||||||++||||||+||||+|||+.+|+|++++.++|++||++||+
T Consensus 233 ~~~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~ 312 (523)
T PLN03233 233 RIHAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKK 312 (523)
T ss_pred eeeeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcceeee--cceEEEEEecCCCeE-EEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccccCCC
Q 012516 241 ELNKTAPRTMVVL--NPLKVVITNMESGTI-MHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPG 317 (462)
Q Consensus 241 ~l~~~~~r~~~v~--~p~~~~i~n~~~~~~-~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g 317 (462)
.|++.|+|+|||. +|++|+|+|+|.... +.+++|+||+ +|++|+|+|+|+++||||++||+. |+||
T Consensus 313 ~ld~~a~R~m~V~~~~pv~v~i~n~~~~~~~~~~~~p~hP~---~~~~G~r~v~~~~~iyIe~~D~~~--------l~~g 381 (523)
T PLN03233 313 EIDKRAKRFMAIDKADHTALTVTNADEEADFAFSETDCHPK---DPGFGKRAMRICDEVLLEKADTED--------IQLG 381 (523)
T ss_pred HhcccCCceEEEccCCcEEEEecCCCCccceeccccccCCC---CCCCceEEEEECCcEEEEHhHHhh--------cCCC
Confidence 9999999999998 699999999987642 2358999998 789999999999999999999974 9999
Q ss_pred CEEEEeeceeEEEEEEEecCCCCCEEEEEEEEeCCCCCCCceeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCccccc
Q 012516 318 KSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWL 397 (462)
Q Consensus 318 ~~V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~~~~~ 397 (462)
++|||+++|||+|++++ +|.+|+++ . +. +.+|++++|||||+. .++++|++++|++||++++|+++++|+
T Consensus 382 ~~vrL~~~~~i~~~~~~-~d~~~~~~---~--~~-d~~~~k~~I~Wv~~~---~~~~~~~~~~yd~L~~~~~~~~~~~~~ 451 (523)
T PLN03233 382 EDIVLLRWGVIEISKID-GDLEGHFI---P--DG-DFKAAKKKISWIADV---SDNIPVVLSEFDNLIIKEKLEEDDKFE 451 (523)
T ss_pred CEEEeCceeeEEEEEEE-ecCceEEe---e--CC-CCcccccEEEEcCCC---CCccceEEEecccccCCCCCCcccChh
Confidence 99999888999999998 77777654 1 12 346788899999852 468999999999999999999989999
Q ss_pred ccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecC-CCCC-ceEEEeecCCCCCCC
Q 012516 398 SDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKD-STPE-KLVFNRTVTLKDSFP 458 (462)
Q Consensus 398 ~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~~-~~~~-~lVfn~~v~Lk~~~~ 458 (462)
++|||+|+.+. +|++|++++++++|++|||||+|||+||+. ++++ .+||+.|+..|....
T Consensus 452 ~~~n~~S~~~~-~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ipdg~~k~~ 513 (523)
T PLN03233 452 DFINPDTLAET-DVIGDAGLKTLKEHDIIQLERRGFYRVDRPYMGEEKPLILFMIPDGKKKAM 513 (523)
T ss_pred hhcCCCceEEE-eEEEchhHhhCCCCCeEEEEEeeEEEEccCCCCCCceEEEEECCCCCcccc
Confidence 99999999998 799999999999999999999999999974 4444 469999999876543
No 7
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-127 Score=988.13 Aligned_cols=452 Identities=60% Similarity=1.019 Sum_probs=434.6
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC-CCCCCCCCCCChhHHHHHHHHHhCCcccCCceE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE-KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 79 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~-~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~ 79 (462)
||++|-.++|+||+|+.+|+.|.+||++|+||+|+|+.|||++.|+ .-.+|+||+|++||+|.+|++|++|++++|+++
T Consensus 310 LG~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF~~Mr~Gk~~eGeAt 389 (764)
T KOG1148|consen 310 LGFEPYKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLFEDMRDGKYEEGEAT 389 (764)
T ss_pred hCCCceeeecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHHHHHhcCCcCcChhh
Confidence 7999999999999999999999999999999999999999999998 345799999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCC
Q 012516 80 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 159 (462)
Q Consensus 80 lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~ 159 (462)
||||+||+++|+.|.|+|+||+.+.||||||++||||||||||||+.|++++|||++|+.||..++..|.||+.||+...
T Consensus 390 LRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcnaL~iY~ 469 (764)
T KOG1148|consen 390 LRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNALEIYC 469 (764)
T ss_pred eeeeeeccCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHH
Q 012516 160 PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 239 (462)
Q Consensus 160 P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr 239 (462)
|.+|+|+|||+.|++||||++.++|.+|+|.||||||+.||.+|||||++|+||.+||+.+|++.+...++...|+++.|
T Consensus 470 P~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i~v~~lE~~VR 549 (764)
T KOG1148|consen 470 PVQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTIDVARLEAAVR 549 (764)
T ss_pred chhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeeceecHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccccCCCCE
Q 012516 240 EELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKS 319 (462)
Q Consensus 240 ~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~ 319 (462)
++|+..+||.|||++|+||+|+|+++...+.+++|..|. +|.+|+|+|+|++.||||++||++.++|+|+||+||+.
T Consensus 550 d~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd~P~---dp~~g~~~Vpft~vIYIErSDFkee~dK~f~RLtpgQp 626 (764)
T KOG1148|consen 550 DYLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPDFPG---DPTSGFHKVPFTRVIYIERSDFKEEDDKDFFRLTPGQP 626 (764)
T ss_pred HHHhccCcceEEeecceEEEEecCCcchhhhccCCCCCC---CCccccccccccceEEEEcccccccCCcchhccCCCCc
Confidence 999999999999999999999999998778899999998 89999999999999999999999999999999999999
Q ss_pred EEEeeceeEEEEEEEecCCCCCEEEEEEEEeC-CCCCCCceeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCc-cccc
Q 012516 320 VLLRYAFPIKCTEVILSDDKETILHIRAEYDP-SKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAEL-DDWL 397 (462)
Q Consensus 320 V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~-~~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~-~~~~ 397 (462)
|+|++.+.+++....-+|++|.|++|+++||+ +.++|||++|||||+ +|+.||+|+|++||+++||++. +.|+
T Consensus 627 VGLr~~~~vi~~~~vvkD~~g~v~ei~v~yd~~s~~~KPK~fIhWVse-----~Pv~vEvRlye~LFks~NP~d~~e~fL 701 (764)
T KOG1148|consen 627 VGLRYAGYVIRVVKVVKDDEGTVIEIHVEYDPASKKKKPKAFIHWVSE-----SPVKVEVRLYEQLFKSENPADLNEVFL 701 (764)
T ss_pred ceeEeecceEEEEEEeeCCCCceEEEEEEecccccccCCceeEEeccC-----CCeEeehhHHHHHhccCCccchhHHHH
Confidence 99999876655554448999999999999998 456789999999996 5899999999999999999975 6799
Q ss_pred ccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEEEeecCCCCCCCCC
Q 012516 398 SDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 460 (462)
Q Consensus 398 ~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~~~~~~~lVfn~~v~Lk~~~~~~ 460 (462)
++|||+|+.|+.+|++|..++..+++|+|||||.|||+||++|+.++|||||||+||++.+|+
T Consensus 702 sDiNp~S~~V~~~a~~D~~~~~a~v~DrFQfeRiGYF~VDkDSt~~kLVfNRtV~LKd~~gk~ 764 (764)
T KOG1148|consen 702 SDINPDSLVVVKGALADKSISDAKVYDRFQFERIGYFCVDKDSTPGKLVFNRTVTLKDDSGKK 764 (764)
T ss_pred HhcCccchhhhhhhhhhhhhcccchhhhHhhhhcceeEecCCCCCceEEEEeEEEeccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999997763
No 8
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-124 Score=997.71 Aligned_cols=440 Identities=31% Similarity=0.472 Sum_probs=417.2
Q ss_pred CCcccCC-ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceE
Q 012516 1 MGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 79 (462)
Q Consensus 1 LGl~wD~-~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~ 79 (462)
|||+||+ ++|||+||++|+++|++||++|+||+|+||+|||+++|..|++|+||++++++++++|+.|.+|.+.+++++
T Consensus 114 LGl~wDe~~~~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~ 193 (601)
T PTZ00402 114 LGVSWDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETC 193 (601)
T ss_pred CCCCCCCceeeccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceE
Confidence 7999995 999999999999999999999999999999999999998899999999999999999999999988888999
Q ss_pred EEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCC
Q 012516 80 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 159 (462)
Q Consensus 80 lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~ 159 (462)
+|+|++|.++|.+|+|||++|++..+||++||+|++|||||||||||||+|||||||||+||++|||+|.|||++|||++
T Consensus 194 lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~ 273 (601)
T PTZ00402 194 LRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRK 273 (601)
T ss_pred EEEecccCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHH
Q 012516 160 PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 239 (462)
Q Consensus 160 P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr 239 (462)
|.|+|||+||++|++||||+++.+|++|+|.||||||+|||++||||||+|+||++||..+|+|++++.|||++|+++||
T Consensus 274 P~~~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr 353 (601)
T PTZ00402 274 PIVEDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNT 353 (601)
T ss_pred ceEEEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccccCCCCE
Q 012516 240 EELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKS 319 (462)
Q Consensus 240 ~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~ 319 (462)
++|++.|+|+|||+||++|+|+|.++...+.+++|+||+ +|++|+|+++|+++||||++||+ +|+||++
T Consensus 354 ~~l~~~a~R~maV~~p~kv~i~~~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~--------~l~~g~~ 422 (601)
T PTZ00402 354 QILDPSVPRYTVVSNTLKVRCTVEGQIHLEACEKLLHKK---VPDMGEKTYYKSDVIFLDAEDVA--------LLKEGDE 422 (601)
T ss_pred HHHhhcCCceEEEcCCCEEEEEECCCCcceEeeccCCCC---CcccCceEEEECCeEEEEhhhHh--------hcCCCCE
Confidence 999999999999999999999999876666889999998 89999999999999999999997 4999999
Q ss_pred EEEeeceeEEEEEEEecCCCCCEEEEEEEEeCC-CCCCCceeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCcccccc
Q 012516 320 VLLRYAFPIKCTEVILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLS 398 (462)
Q Consensus 320 V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~-~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~~~~~~ 398 (462)
|||+.+||+.|.++..++++|+|++++|++++. +.+|+|++|||||+. .+.+++++|+||+||++++|+++++|++
T Consensus 423 vrL~~~gn~~i~~~~~~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~---~~~~~~~~r~yd~Lf~~~~p~~~~~~~~ 499 (601)
T PTZ00402 423 VTLMDWGNAYIKNIRRSGEDALITDADIVLHLEGDVKKTKFKLTWVPES---PKAEVMELNEYDHLLTKKKPDPEESIDD 499 (601)
T ss_pred EEEeccCCEEEEEEEeeCCCCcEEEEEEEECCCCCCCcCCCeEEEecCC---CCcceEEEEecccccCCCCCCccccHHH
Confidence 999988899998887556789999999999876 447888999999973 3678899999999999999998889999
Q ss_pred cCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEEEeecCCCCCC
Q 012516 399 DLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSF 457 (462)
Q Consensus 399 ~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~~~~~~~lVfn~~v~Lk~~~ 457 (462)
+|||+|+.+. +|++|++++++++|++|||||+|||+||+.+++ .||..|+..|...
T Consensus 500 ~ln~~s~~~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~--~vl~~ipdg~~~~ 555 (601)
T PTZ00402 500 IIAPVTKYTQ-EVYGEEALSVLKKGDIIQLERRGYYIVDDVTPK--KVLIAIPDGREKV 555 (601)
T ss_pred hcCCCChheE-EEEEchhHhhCCCCCEEeEEEeEEEEEecCCCC--eEEEECCCCcccc
Confidence 9999999986 799999999999999999999999999985533 4899999988763
No 9
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=2.8e-121 Score=1004.13 Aligned_cols=438 Identities=29% Similarity=0.486 Sum_probs=417.1
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
||++||++|+||+||++|+++|++||++|+||+|+|+++++++.|..+|+|+||+++++||+++|++|++|.+.++++||
T Consensus 275 LG~~~d~~~~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~l 354 (722)
T PLN02907 275 LGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCV 354 (722)
T ss_pred cCCCCCCcccccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 79999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCC
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 160 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P 160 (462)
|+|+||.++|++|+|||++|++..+||++||+|++|||||||||||||+|||||||||+||++||++|.|||++|||+.|
T Consensus 355 R~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p 434 (722)
T PLN02907 355 RGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKV 434 (722)
T ss_pred EEEcccCCCCCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHH
Q 012516 161 YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240 (462)
Q Consensus 161 ~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~ 240 (462)
.++||+|||++|++||||++.++|++|+|.|||||||||+++||||||+||||++||..+|+|++++.|||++||++||+
T Consensus 435 ~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~ 514 (722)
T PLN02907 435 HIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKK 514 (722)
T ss_pred eeEEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcceeeecc--eEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccccCCCC
Q 012516 241 ELNKTAPRTMVVLNP--LKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 318 (462)
Q Consensus 241 ~l~~~~~r~~~v~~p--~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~ 318 (462)
+||+.++|+|||+|| ++|.|+|+|+. .+.+++|+||+ +|++|+|+++|+++||||++||+. |++|+
T Consensus 515 ~id~~a~R~~~v~~p~~v~~~i~~~~~~-~~~~~~p~hp~---~~~~g~r~~~~~~~i~i~~~D~~~--------l~~g~ 582 (722)
T PLN02907 515 IIDPVCPRHTAVLKEGRVLLTLTDGPET-PFVRIIPRHKK---YEGAGKKATTFTNRIWLDYADAEA--------ISEGE 582 (722)
T ss_pred HhccCCCceeEEecCCEEEEEEcCCCCC-ceeeeccCCCC---CCccceEEEEECCcEEEEcchHhh--------cCCCC
Confidence 999999999999999 88899998874 35789999998 799999999999999999999985 89999
Q ss_pred EEEEeeceeEEEEEEEecCCCCCEEEEEEEEeCC-CCCCCceeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCccccc
Q 012516 319 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWL 397 (462)
Q Consensus 319 ~V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~-~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~~~~~ 397 (462)
+|||+++||++|+++. +|++|+|++++|+++++ +.+|+|++|||||+. ..+++|+|++||+||++++|++.++|+
T Consensus 583 ~v~L~~~~~~~i~~~~-~~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~---~~~~~~~~~~~d~l~~~~~~~~~~~~~ 658 (722)
T PLN02907 583 EVTLMDWGNAIIKEIT-KDEGGAVTALSGELHLEGSVKTTKLKLTWLPDT---NELVPLSLVEFDYLITKKKLEEDDNFL 658 (722)
T ss_pred EEEEcccCCEEEEEEE-ECCCCcEEEEEEEEccccCCCcCCCeEEEecCC---CCceEEEEEccccccccCCCccccchh
Confidence 9999988999999998 89999999999999876 457888999999972 358999999999999999999989999
Q ss_pred ccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecC-CCCC-ceEEEeecCCCC
Q 012516 398 SDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKD-STPE-KLVFNRTVTLKD 455 (462)
Q Consensus 398 ~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~~-~~~~-~lVfn~~v~Lk~ 455 (462)
++|||+|+.+. .|++|++++++++|++|||||+|||+||+. ++++ .+||..|+..|.
T Consensus 659 ~~~n~~s~~~~-~~~~e~~~~~~~~~~~~QfeR~Gy~~~D~~~~~~~~~~~~~~ip~~~~ 717 (722)
T PLN02907 659 DVLNPCTKKET-AALGDSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAIPDGRQ 717 (722)
T ss_pred HhcCCCceeEE-EEEEcHhHhhCCCCCeEEEEEeEEEEECcCCCCCCceEEEEECCCCCc
Confidence 99999999998 799999999999999999999999999984 3444 468988888654
No 10
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-111 Score=865.09 Aligned_cols=438 Identities=32% Similarity=0.568 Sum_probs=411.9
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
|||++|.++|+||||+...+||.+||++|+||++.++.|+|+..|+.|.+|.||++++|+||++|++|.+|...+-++|+
T Consensus 262 LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~Cv 341 (712)
T KOG1147|consen 262 LGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCV 341 (712)
T ss_pred hCcCcceeeechhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhhe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCC
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 160 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P 160 (462)
|+||||+++|.+||||||||++..||||||++|.+||||||||+|.|+++||||.||+.|+.++.++|.|+++|||+++|
T Consensus 342 RaKIdm~s~NkaMRDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp 421 (712)
T KOG1147|consen 342 RAKIDMSSPNKAMRDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKP 421 (712)
T ss_pred eeeecccCCCccccCCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHH
Q 012516 161 YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240 (462)
Q Consensus 161 ~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~ 240 (462)
.+|+|+|||+.+|.||||++.++|++|+|+||||||+||++|.+|||++.|||++|+..+|.|++-..++|+++|+||++
T Consensus 422 ~iwefsRlN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKK 501 (712)
T KOG1147|consen 422 HIWEFSRLNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKK 501 (712)
T ss_pred ceeehhhhhhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcceeeecc--eEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccccCCCC
Q 012516 241 ELNKTAPRTMVVLNP--LKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 318 (462)
Q Consensus 241 ~l~~~~~r~~~v~~p--~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~ 318 (462)
.|||.|||++||..+ |.+.+.|.|.. +.++ ..|+|+|||+.|++++.|++.||||++|++. |++|+
T Consensus 502 vIDPVapRytav~~~~~V~v~i~~~~~~--~~~~--~~PkHkKn~~lG~K~v~~~~~I~le~~Da~~--------l~~gE 569 (712)
T KOG1147|consen 502 VIDPVAPRYTAVVKEDRVEVTITNGPQE--EYIE--VSPKHKKNPELGEKKVIYSKKILLEQADAEA--------LKEGE 569 (712)
T ss_pred ccCCCCccceeeccCceEEEecCCCCCc--chhh--ccccCCCCcccCccceeeccceeEeccchhh--------hcCCc
Confidence 999999999999965 44555565554 3333 3455555999999999999999999999987 89999
Q ss_pred EE-EEeeceeEEEEEEEecCCCCCEEEEEEEEeCC-CCCCCceeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCcccc
Q 012516 319 SV-LLRYAFPIKCTEVILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDW 396 (462)
Q Consensus 319 ~V-~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~-~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~~~~ 396 (462)
+| +|.| ||++|.++. +|++|+||.+.++++++ +.||+|.+++|++.. ..+++|.+..|||||+++..+++++|
T Consensus 570 evTlmnW-GN~~i~ki~-kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt---~~~vpv~lv~fd~lItK~~le~dEd~ 644 (712)
T KOG1147|consen 570 EVTLMNW-GNAIIKKIN-KDASGKVTSLSAKLNLDGDFKKTKLKLTWLADT---NDSVPVDLVDFDHLITKDKLEKDEDF 644 (712)
T ss_pred EEEEEec-cceeeEEee-ccCCceEEEEEEEeccCCccccccceeEEeccC---CCccceEEeechhhcchhhcccchhH
Confidence 99 7777 899999998 99999999999999877 457888999999985 58999999999999999999999999
Q ss_pred cccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEec--CCCCCceEEEeecCCCCC
Q 012516 397 LSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK--DSTPEKLVFNRTVTLKDS 456 (462)
Q Consensus 397 ~~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~--~~~~~~lVfn~~v~Lk~~ 456 (462)
.++|||+|.... -+++|++++++|+||+|||||.|||+||. ...+..+||+.|+..|.-
T Consensus 645 k~f~n~~t~~~~-~~~gd~~ikn~KkGDIIQ~eRkGfy~~D~p~~~~~~p~Vlf~IPdg~t~ 705 (712)
T KOG1147|consen 645 KDFVNPNTVKET-LMLGDPAIKNLKKGDIIQLERKGFYICDVPLPKDGKPLVLFSIPDGKTV 705 (712)
T ss_pred HHhcCCCccccc-hhccChhhhccccCceEEEeccceEEeccccCCCCCcEEEEECCCCCcC
Confidence 999999999876 79999999999999999999999999997 334567999999999873
No 11
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4e-109 Score=881.61 Aligned_cols=390 Identities=31% Similarity=0.492 Sum_probs=367.9
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
||++||++|+||+|+++|+++|++||++|+||+|+||+++|++.|..|++|+||++++++++++|++|.+|.+.+|++|+
T Consensus 165 LGl~wD~~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vl 244 (567)
T PRK04156 165 LGVKWDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVV 244 (567)
T ss_pred cCCCCCCccCcccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCC
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 160 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P 160 (462)
|+|+|+.++|++|+|||++|+...+||++|++|++|||||||||||||+|||||||||.||++||++|.|||++|||+.|
T Consensus 245 R~k~d~~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P 324 (567)
T PRK04156 245 RVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYP 324 (567)
T ss_pred EEECcccCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHH
Q 012516 161 YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240 (462)
Q Consensus 161 ~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~ 240 (462)
.|+|||+|+++|+|||||+++++|++|.++||||||++||++||++||+|+||++||+.+|+|++++.|+|++|+++||+
T Consensus 325 ~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~ 404 (567)
T PRK04156 325 ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRK 404 (567)
T ss_pred eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccccCCCCEE
Q 012516 241 ELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSV 320 (462)
Q Consensus 241 ~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~V 320 (462)
+|++.|+|+|||.||++|+|+|.+. +++++|+||+ +|++|+|+++|+++||||++||++ + |++|
T Consensus 405 ~ld~~a~R~~~V~~pv~v~i~~~~~---~~~~~p~hP~---~~~~G~r~v~~~~~i~i~~~D~~~--------~--g~~v 468 (567)
T PRK04156 405 LIDPIANRYFFVRDPVELEIEGAEP---LEAKIPLHPD---RPERGEREIPVGGKVYVSSDDLEA--------E--GKMV 468 (567)
T ss_pred HHhccCCceEEECCceEEEEcCCCc---eEEEcCCCCC---CCCCceEEEEECCeEEEEHHHHhh--------c--CCEE
Confidence 9999999999999999999999643 5789999999 799999999999999999999986 2 9999
Q ss_pred EEeeceeEEEEEEEecCCCCCEEEEEEEEeCC---CCCCCc-eeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCcccc
Q 012516 321 LLRYAFPIKCTEVILSDDKETILHIRAEYDPS---KKTKPK-GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDW 396 (462)
Q Consensus 321 ~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~---~~kK~k-~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~~~~ 396 (462)
|||++|||+|+++. +++|+|+++ ..+|++ ++|||||+ .++++|+|+.+ ++
T Consensus 469 rL~~~~nv~~~~~~---------~~~~~~~~~~~~~~~k~~~~~i~Wv~~----~~~v~~~v~~~---------~~---- 522 (567)
T PRK04156 469 RLMDLFNVEITGVS---------VDKARYHSDDLEEARKNKAPIIQWVPE----DESVPVRVLKP---------DG---- 522 (567)
T ss_pred EeeeEEEEEEEEEE---------EEEEEEcCCccccccccCCCEEEEccC----CCCeeEEEECC---------Cc----
Confidence 99999999999874 478899765 346777 69999998 56899999863 21
Q ss_pred cccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCC
Q 012516 397 LSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTP 442 (462)
Q Consensus 397 ~~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~~~~~ 442 (462)
.+. +|++|++++++++|++|||||+|||+||+...+
T Consensus 523 ---------~~~-~g~~E~~~~~~~~~~~~QfeR~Gf~~~D~~~~~ 558 (567)
T PRK04156 523 ---------GDI-EGLAEPDVADLEVDDIVQFERFGFVRIDSVEDD 558 (567)
T ss_pred ---------eEE-EEEEchhHhhCCCCCEEEEEEeEEEEEecCCCC
Confidence 233 699999999999999999999999999997433
No 12
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=2.5e-108 Score=874.51 Aligned_cols=400 Identities=28% Similarity=0.476 Sum_probs=368.0
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
||++||++++||+|++.|+++|++||++|+||+|+||+|+|++.|..|++|+||++++++++++|++|++|.+.++++||
T Consensus 155 LGi~~d~~~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~l 234 (560)
T TIGR00463 155 LGVKGDEVVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVV 234 (560)
T ss_pred cCCCCCccccccccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCC
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 160 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P 160 (462)
|+|+||.++|++|+|||+||++.++||++||+|++|||||||||||||+|||||||||.||++||++|.+++.+|||..|
T Consensus 235 R~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P 314 (560)
T TIGR00463 235 RAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELP 314 (560)
T ss_pred EEECCCcCCCccccCcEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCC-CcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHH
Q 012516 161 YVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 239 (462)
Q Consensus 161 ~~~h~~~l~~~-g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr 239 (462)
.|+|++++.+. +.+||||.....+.+|.+.||||||++||++||+||++|+||++||..||||++++.++|++||++||
T Consensus 315 ~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr 394 (560)
T TIGR00463 315 EFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNK 394 (560)
T ss_pred eEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHH
Confidence 99999997665 45888877666666799999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccccCCCCE
Q 012516 240 EELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKS 319 (462)
Q Consensus 240 ~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~ 319 (462)
+.|++.|+|+|||.||++|+|+|+++. .++++|+||+ +|++|+|+++|+++||||++||++ .+|++
T Consensus 395 ~~id~~a~R~~~V~~p~~v~i~~~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~i~~~D~~~---------~~g~~ 460 (560)
T TIGR00463 395 KIIDPIARRYFFIWNPVKIEIEGAPEP--KIVERPLHPD---NPEVGERKLIYYGEIYVDKDDLEV---------IEGEE 460 (560)
T ss_pred HHhCcCCCceEEEcCCcEEEEecCCCC--eeEEccCCCC---CCCCceEEEEECCeEEEEHHHHhh---------CCCCE
Confidence 999999999999999999999998753 4568999998 799999999999999999999974 59999
Q ss_pred EEEeeceeEEEEEEEecCCCCCEEEEEEEEeCC-CCCCCceeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCcccccc
Q 012516 320 VLLRYAFPIKCTEVILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLS 398 (462)
Q Consensus 320 V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~-~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~~~~~~ 398 (462)
|+||++|||+|+++. ++ |.+ .+..+.+ ..+|++++|||||+ .++++|+++.||+|++
T Consensus 461 vrL~~~~ni~~~~~~-~~--~~~---~~~~~~~~~~~~~~~~i~Wv~~----~~~v~~~~~~~d~l~~------------ 518 (560)
T TIGR00463 461 VRLMDWGNVIITKKN-DD--GSM---YHSLNLEGARKKGKHIIHWLPD----KDAVKVKVIMPDHLIT------------ 518 (560)
T ss_pred EEEeecccEEEEEEe-CC--CcE---EeccccccccccCCCEEEECcC----CCceEEEEEcCccccc------------
Confidence 999999999999986 43 432 2444443 34668899999998 5789999999998853
Q ss_pred cCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCC-CceEE
Q 012516 399 DLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTP-EKLVF 447 (462)
Q Consensus 399 ~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~~~~~-~~lVf 447 (462)
.|++|+++...++|++|||||+|||+||+...+ ...||
T Consensus 519 -----------~~~~E~~~~~~~~~~~vQfeR~Gy~~~D~~~~~~~~~~f 557 (560)
T TIGR00463 519 -----------EGRLEEDASFEEVGDIIQFERFGFYRLDSADKDGKVYVY 557 (560)
T ss_pred -----------cCccCcchhhcCCCCEEEEEEeEEEEEccCCCCCceEEE
Confidence 478899998899999999999999999997544 44777
No 13
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-75 Score=609.36 Aligned_cols=386 Identities=32% Similarity=0.453 Sum_probs=320.3
Q ss_pred CCcccCC-ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC----CCC-C-CCCCCCChhHHHHHHHHHhC-Cc
Q 012516 1 MGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKM-N-SPWRDRPIAESLKLFEDMRN-GR 72 (462)
Q Consensus 1 LGl~wD~-~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~----~~~-~-~~~R~~~~ee~l~~~~~m~~-G~ 72 (462)
|||+||+ |||||+||++|+++|++||++|+||+|+||+|||++.|+ .+. | +++|+ ++++..|++|.. |.
T Consensus 71 LGl~wde~~~~QS~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~ 147 (472)
T COG0008 71 LGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE 147 (472)
T ss_pred cCCCCCCceeehhhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc
Confidence 7999997 899999999999999999999999999999988887765 222 3 55554 677888888887 43
Q ss_pred ccCCceEEEEeecCCCCCCcCCCcEEEEEecCC-CCC-CCCccccccccceeeeeecCCCccceEeeccccccccHHHHH
Q 012516 73 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP-HPH-AGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFW 150 (462)
Q Consensus 73 ~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~-h~~-~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~ 150 (462)
++++|+|+|+|+.++++.|+|+|.+|+...+ |+. ++.+|++|||||||||||||+|||||||||+||++|||+|+|
T Consensus 148 --~~~~viR~k~~~~~~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~ 225 (472)
T COG0008 148 --GGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIW 225 (472)
T ss_pred --CCCeEEEEeCCCCCCCCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHH
Confidence 7899999999998888899999999999988 999 999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCeEEEEeee-cCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccc
Q 012516 151 LLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLI 229 (462)
Q Consensus 151 l~~aLg~~~P~~~h~~~l-~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~ 229 (462)
||++|||++|.|+|||++ +.+|+|||||++...+....+.||+||+++|+.+++++|++|+++..|+...|++..+...
T Consensus 226 l~~~lg~~~P~~~H~~li~~~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~ 305 (472)
T COG0008 226 LYEALGWPPPVYAHLPLLLNEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTI 305 (472)
T ss_pred HHHHcCCCCCcEEEeeeeecCCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhh
Confidence 999999999999999985 5557799999998888777899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhhccCCcceeeecceEEEEEecCCC-eEEEEEeecCCCCCCCCCCCeEEEeecc--eEEEecCccccc
Q 012516 230 RLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESG-TIMHLDAKRWPDAQADDASAFYKVPFSN--VVYIEHSDFRMK 306 (462)
Q Consensus 230 ~~~~l~~~nr~~l~~~~~r~~~v~~p~~~~i~n~~~~-~~~~~~~p~~p~~~k~~~~G~r~v~~~~--~i~Ie~~D~~~~ 306 (462)
.++.+..||++.|+..++|+|++ +|+++.++++++. ....+.+|+ ++++|.|.+++.+ .++|++.|+..
T Consensus 306 ~~~~~~~fd~~kL~~~n~ry~~~-~p~e~~~~~l~~~~~~~~~~~~~------~~e~~~~~~~l~~~~~~~i~~~~~~~- 377 (472)
T COG0008 306 VSKSPAAFDRKKLDWLNPRYMRV-DPVEVVIENLKPHLEEEGATLPL------NPEMGERVVPLTKETLIEIERLDFFF- 377 (472)
T ss_pred hhcccccccHHHhHhhhHHHHHh-CCHHHHHHhhhhhhhhhcccCCC------CHHHHhhhhhhccchHHHHhHHHHHH-
Confidence 99999999999999999999999 9999999998652 112333333 4799999999999 89999999875
Q ss_pred CCcCccccCCCCEEEEeeceeEEEEEEEecCCCCCEEEEEEEEeCCCCCCCceeEEeccCCCCCCCCeEEEEEeccccCC
Q 012516 307 DSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFN 386 (462)
Q Consensus 307 ~~~~f~~l~~g~~V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~ 386 (462)
+.++++++++.+.++.+.++......+.... .+.+..++|||++. . .+|+
T Consensus 378 -------~~~~~~~~~~~l~~~~~~~~l~~~~~~l~~~---------~~~~~~i~~wv~~~----~----------~~~~ 427 (472)
T COG0008 378 -------FEDKEEVRLKRLANVIVAEVLEKDAEGLITS---------DWTKENIIHWVKAV----A----------RLFG 427 (472)
T ss_pred -------hcchHHHHHHhhcchHHHHHHHHHHHhhhhc---------cccHHHHHHHHHHH----H----------HHhC
Confidence 3444677776655553333221222222111 12234599999972 1 3455
Q ss_pred CCCCCCcccccccCCCCCceeecceEeccccccCCC--CCeEEEEEeeeEEEe
Q 012516 387 SENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAV--GDRFQFERLGYFAVD 437 (462)
Q Consensus 387 ~~~p~~~~~~~~~iN~~S~~~~~~~~~E~~~~~~k~--g~~iQFER~Gyf~vD 437 (462)
.+.| .+++.++....+++++|.+..... |..+||+|.|||++|
T Consensus 428 vk~~--------~~~~plr~a~tG~~~~p~l~~~~~~~g~~~q~~Rl~~~~~~ 472 (472)
T COG0008 428 VKGP--------KLFPPLRVALTGGYVEPELADTIELLGKEVQFERLGYALAD 472 (472)
T ss_pred CCCc--------ccchhhHHHhcCCccCCCHHHHHHhhchHHHHHHHHHHhhC
Confidence 5555 478888888877999999876544 455999999999875
No 14
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1e-58 Score=482.22 Aligned_cols=211 Identities=19% Similarity=0.241 Sum_probs=189.0
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCCCCCCChhHHHHHHHHHhCCc
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGR 72 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~~R~~~~ee~l~~~~~m~~G~ 72 (462)
|||+||++|+||+|+++|+++|++|+++|+||+||||+||+++.|+ ++|+++||+++.++.+ .+
T Consensus 61 lGl~wDe~y~QSeR~~~Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~------~~-- 132 (433)
T PRK12410 61 FGISWDKLVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL------NC-- 132 (433)
T ss_pred cCCCCCCCeehhccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH------hc--
Confidence 7999999999999999999999999999999999999999998874 4699999999988752 22
Q ss_pred ccCCceEEEEeecC-------------CCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeecc
Q 012516 73 IEEGKATLRMKQDM-------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTL 139 (462)
Q Consensus 73 ~~~~~~~lR~K~d~-------------~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~ 139 (462)
++++|+|+|+|. ...+.+++||||+|++ ++||||||||||||+|||||||||+
T Consensus 133 --g~~~~iR~k~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~D------------g~PtY~fA~vVDD~~mgIThViRG~ 198 (433)
T PRK12410 133 --NKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRAD------------KTPTYNFACAVDDMLYDISLIIRGE 198 (433)
T ss_pred --CCCeEEEEEcCCCceeeeeccceeEEeccccCCCeEEEcCC------------CCccccccchhchhhcCCCEEEech
Confidence 368999999974 2244566777777765 5999999999999999999999999
Q ss_pred ccccccHHHHHHHHHhCCCC-CeEEEEe-eecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHH
Q 012516 140 EFETRRASYFWLLHALGLYQ-PYVWEYS-RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 217 (462)
Q Consensus 140 e~l~~t~~q~~l~~aLg~~~-P~~~h~~-~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~ 217 (462)
||++|||+|++||+||||++ |.|+|+| +++.+|+|||||+++ ++|++||++||+|+||.|||
T Consensus 199 d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~n~l 262 (433)
T PRK12410 199 DHVSNTPKQILIREALGYNKEITYAHLPIILNEEGKKMSKRDNA----------------SSVKWLLEQGFLPSAIANYL 262 (433)
T ss_pred hhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCCCCeeecccCh----------------hhHHHHHHCCCCHHHHHHHH
Confidence 99999999999999999986 5999999 579999999999963 47999999999999999999
Q ss_pred HHcCc---------------------cCCCccccHHHHHHHHHHhhhccCCcc
Q 012516 218 QGIGI---------------------SRSDSLIRLDRLEYHIREELNKTAPRT 249 (462)
Q Consensus 218 ~~lG~---------------------s~~~~~~~~~~l~~~nr~~l~~~~~r~ 249 (462)
+.||| +++++.||++||+|+|+++|+..+..-
T Consensus 263 ~~lG~~~~~e~~~~~eli~~F~~~~i~~~~~~~d~~kL~~~N~~~i~~~~~~~ 315 (433)
T PRK12410 263 ILLGNKTPKEIFTLEEAIEWFDIEKISKSPAKFDLKKLRFINREHLKMLDDER 315 (433)
T ss_pred HHhCCCCcccccCHHHHHHhCCHhhCCCccccCCHHHHHHHHHHHHHhCCHHH
Confidence 99997 678899999999999999999887654
No 15
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=2.4e-56 Score=472.03 Aligned_cols=211 Identities=19% Similarity=0.244 Sum_probs=183.8
Q ss_pred CCcccCC---------ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCCCCCCChhHHHH
Q 012516 1 MGWEPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLK 63 (462)
Q Consensus 1 LGl~wD~---------~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~~R~~~~ee~l~ 63 (462)
|||+||+ ||+||+|+++|+++|++|+++|+||+||||+|++++.|+ +.|+++||+++.+++.+
T Consensus 107 LGl~wDegp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~ 186 (535)
T PLN02627 107 LGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQA 186 (535)
T ss_pred cCCCCCcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHH
Confidence 7999995 699999999999999999999999999999999998774 46999999999998765
Q ss_pred HHHHHhCCcccCCceEEEEeecC--------------CCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCC
Q 012516 64 LFEDMRNGRIEEGKATLRMKQDM--------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSI 129 (462)
Q Consensus 64 ~~~~m~~G~~~~~~~~lR~K~d~--------------~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l 129 (462)
. +.+| .++++|+|++- ...+.+++||||+|++ ++||||||||||||+
T Consensus 187 ~---~~~g----~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~D------------G~PtY~fA~vVDD~~ 247 (535)
T PLN02627 187 E---LAKG----TPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSN------------GQPVYNFCVAVDDAT 247 (535)
T ss_pred H---HhCC----CCceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEecC------------CCccccccceecccc
Confidence 3 3344 36788888752 3456688999999987 599999999999999
Q ss_pred CccceEeeccccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCC
Q 012516 130 ENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGV 208 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~ 208 (462)
|||||||||+||++|||+|++||+||||++|.|+|+|+ ++.+|+|||||++.. ++..||++||
T Consensus 248 mgITHViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~~----------------~v~~~r~~G~ 311 (535)
T PLN02627 248 MGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGAT----------------SVGQFREMGY 311 (535)
T ss_pred cCCcEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCCCccccccCCc----------------cHHHHHHCCC
Confidence 99999999999999999999999999999999999997 588999999999643 5889999999
Q ss_pred CHHHHHHHHHHcCcc-----------------------CCCccccHHHHHHHHHHhhhccC
Q 012516 209 TSTSINAFVQGIGIS-----------------------RSDSLIRLDRLEYHIREELNKTA 246 (462)
Q Consensus 209 ~peAi~~f~~~lG~s-----------------------~~~~~~~~~~l~~~nr~~l~~~~ 246 (462)
+|+||.||+++|||| ++++.||.+||.|+|+++|...+
T Consensus 312 ~PeAi~nyla~LGws~~~~~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~ 372 (535)
T PLN02627 312 LPDAMVNYLALLGWNDGTENEIFTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLP 372 (535)
T ss_pred CHHHHHHHHHHhCCCCCCCCCcCCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCC
Confidence 999999999999986 35566777777777777776554
No 16
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=3.8e-56 Score=429.71 Aligned_cols=176 Identities=64% Similarity=1.117 Sum_probs=169.9
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
|||+||++++||+|+++|+++|++|+++|+||+
T Consensus 63 lGl~wD~~~~QS~r~~~Y~~~~~~L~~~g~aY~----------------------------------------------- 95 (238)
T cd00807 63 LGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYV----------------------------------------------- 95 (238)
T ss_pred cCCCCCCceecccCHHHHHHHHHHHHHcCCeec-----------------------------------------------
Confidence 799999999999999999999999999999998
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCC
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 160 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P 160 (462)
|+++|++|+++|||||||||||++|||||||||+||++|||+|+|||++|||++|
T Consensus 96 -------------------------~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P 150 (238)
T cd00807 96 -------------------------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRP 150 (238)
T ss_pred -------------------------CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCC
Confidence 2334556778899999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHH
Q 012516 161 YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240 (462)
Q Consensus 161 ~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~ 240 (462)
.++||+|||.+|+|||||+++++|++|.+.||||||++|+++||++|++||||+|||+.||+|++++.|++++|+++||+
T Consensus 151 ~~~~~~hln~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~ 230 (238)
T cd00807 151 HQWEFSRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRK 230 (238)
T ss_pred ceeEEEEECCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCc
Q 012516 241 ELNKTAPR 248 (462)
Q Consensus 241 ~l~~~~~r 248 (462)
+|++.++|
T Consensus 231 ~id~~~~r 238 (238)
T cd00807 231 DLNPTAPR 238 (238)
T ss_pred HhccCCCC
Confidence 99999987
No 17
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.2e-55 Score=456.37 Aligned_cols=211 Identities=23% Similarity=0.213 Sum_probs=183.9
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCCCCCCChhHHHHHHHHHhCCc
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGR 72 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~~R~~~~ee~l~~~~~m~~G~ 72 (462)
||++||+.|+||+|++.|++++++|+++|+||+||||+||+++.|+ +.|++.||+++.++..+ +...|
T Consensus 64 LGI~~De~y~QSer~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~---~~~~g- 139 (445)
T PRK12558 64 LGINWDRTFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAA---LEAEG- 139 (445)
T ss_pred cCCCCCccccHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHh---HHhcC-
Confidence 7999999999999999999999999999999999999999988774 46999999999887654 23334
Q ss_pred ccCCceEEEEeec-------------CCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeecc
Q 012516 73 IEEGKATLRMKQD-------------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTL 139 (462)
Q Consensus 73 ~~~~~~~lR~K~d-------------~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~ 139 (462)
.++++|+|++ +..++..++||||+|++ ++||||||||||||+|||||||||+
T Consensus 140 ---~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~d------------g~PtY~fA~vVDD~~m~ITHViRG~ 204 (445)
T PRK12558 140 ---RKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRAD------------GSYLYTLPSVVDDIDMGITHIIRGE 204 (445)
T ss_pred ---CCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEecC------------CCccccccceeccccCCCCEEEech
Confidence 4789999874 23456789999999987 5899999999999999999999999
Q ss_pred ccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHH
Q 012516 140 EFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 218 (462)
Q Consensus 140 e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~ 218 (462)
||++|||+|++||+||||++|.|+|+|+ ++.+|+|||||+++ ++|.+||++||+||||+||++
T Consensus 205 d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~----------------~sv~~~r~~G~~Peai~n~la 268 (445)
T PRK12558 205 DHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADGKGLSKRLGG----------------LSIRSLREDGIEPMAIASLLA 268 (445)
T ss_pred hhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCcccccccCCC----------------cCHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999999999999999997 57789999999953 479999999999999999999
Q ss_pred HcCcc----------------------CCCccccHHHHHHHHHHhhhccC
Q 012516 219 GIGIS----------------------RSDSLIRLDRLEYHIREELNKTA 246 (462)
Q Consensus 219 ~lG~s----------------------~~~~~~~~~~l~~~nr~~l~~~~ 246 (462)
+|||| ++++.||.+||.|+|+++|...+
T Consensus 269 ~lG~s~~~~e~~~~~eli~~F~l~~~~~~~~~fd~~KL~w~N~~~i~~~~ 318 (445)
T PRK12558 269 RLGTSDPVEPYTSMEELAESFDLSSFSRAPAKFDPEDLERLNARLLHALP 318 (445)
T ss_pred HHcCCCCCcccCCHHHHHHhCCHhhCCCccccCCHHHHHHHHHHHHHhCC
Confidence 99986 35556677777777777776553
No 18
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-55 Score=438.97 Aligned_cols=210 Identities=19% Similarity=0.284 Sum_probs=184.3
Q ss_pred CCcccCC---------ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCCCCCCChhHHHH
Q 012516 1 MGWEPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLK 63 (462)
Q Consensus 1 LGl~wD~---------~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~~R~~~~ee~l~ 63 (462)
+||+||| ||.||+|.++|.+||++|++.|+||+||||++++...|. ++|++.||+++.+|...
T Consensus 95 ~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~ 174 (524)
T KOG1149|consen 95 ANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ 174 (524)
T ss_pred cCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH
Confidence 5899995 699999999999999999999999999999999998876 67999999999987654
Q ss_pred HHHHHhCCcccCCceEEEEeecCCCC------------C--CcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCC
Q 012516 64 LFEDMRNGRIEEGKATLRMKQDMQND------------N--FNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSI 129 (462)
Q Consensus 64 ~~~~m~~G~~~~~~~~lR~K~d~~~~------------n--~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l 129 (462)
...+| -++|+|||++-..+ + ...+|||+.+++ ++||||||||||||+
T Consensus 175 ---~lakg----~pf~iRFrl~~~~~~f~DLvyG~v~~~~d~~~gD~VvmKSD------------gfPTYHfAnVVDDh~ 235 (524)
T KOG1149|consen 175 ---KLAKG----TPFTIRFRLPKESPPFTDLVYGKVNHNVDSNEGDPVVMKSD------------GFPTYHFANVVDDHL 235 (524)
T ss_pred ---HHhcC----CCeeEEEecCCCCCChhhhhhhhhhccccccCCCcEEEecC------------CCcceeeeeeecchh
Confidence 34445 48999999874211 1 225678888876 699999999999999
Q ss_pred CccceEeeccccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCC
Q 012516 130 ENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGV 208 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~ 208 (462)
|||||||||+||++||++|+.||+||||.+|.|+|.|. +|.+|+|||||+++. .|+.|+++||
T Consensus 236 M~IsHViRGeEWlpST~KH~lLYkAfgW~pPkFaHlpLl~n~d~sKLSKRqgD~----------------~vs~~~e~G~ 299 (524)
T KOG1149|consen 236 MGISHVIRGEEWLPSTLKHILLYKAFGWQPPKFAHLPLLLNPDGSKLSKRQGDA----------------SVSHYREQGY 299 (524)
T ss_pred cchhheeecchhccccHHHHHHHHHhCCCCCceeeeeeeecCCcchhhhhcCcc----------------hHHHHHHcCC
Confidence 99999999999999999999999999999999999996 699999999999755 4789999999
Q ss_pred CHHHHHHHHHHcCcc-----------------------CCCccccHHHHHHHHHHhhhcc
Q 012516 209 TSTSINAFVQGIGIS-----------------------RSDSLIRLDRLEYHIREELNKT 245 (462)
Q Consensus 209 ~peAi~~f~~~lG~s-----------------------~~~~~~~~~~l~~~nr~~l~~~ 245 (462)
+|||+.|||+++||+ ++++.+|.++|+++||.+|+..
T Consensus 300 LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~i~~ltk~~a~ld~ekL~~~Nr~~lqr~ 359 (524)
T KOG1149|consen 300 LPEALLNYIALLGWGFRTENEFFSLEELIEQFSIERLTKSNAILDSEKLRFLNRLHLQRL 359 (524)
T ss_pred ChHHHHHHHHHcCCCcccccccccHHHHHHHhchhhhcccccccCHHHHHHHHHHHHhhh
Confidence 999999999999974 6778889999999999888544
No 19
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=2.3e-56 Score=451.33 Aligned_cols=222 Identities=29% Similarity=0.337 Sum_probs=189.1
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCC--CCCCCCCCCChhHHHHHH-HHHhCCcccCC
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLF-EDMRNGRIEEG 76 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~--~~~~~~R~~~~ee~l~~~-~~m~~G~~~~~ 76 (462)
|||+|| +||+||+|+++|+++|++|+++|+||+|+||++||++.|+. +..|+++...++..+.++ ++|.+|...++
T Consensus 63 lGl~~D~~~~~QS~r~~~Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~ 142 (314)
T PF00749_consen 63 LGLEWDYGPYYQSDRLEIYQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGG 142 (314)
T ss_dssp HT---STCEEEGGGGHHHHHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTT
T ss_pred EEEecCCeEEeHHHHHHHHHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCC
Confidence 699999 89999999999999999999999999999999999999874 566778888888888888 78888888889
Q ss_pred ceEEEEeecCCCCCCcCCCcEEEEEecCC---CCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHH
Q 012516 77 KATLRMKQDMQNDNFNMYDLIAYRIKFTP---HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 153 (462)
Q Consensus 77 ~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~---h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~ 153 (462)
++++|+|+|+.++ ..++|+|.+|+...+ |+..+.++.++||||||||||||+|||||||||+||++||++|++||+
T Consensus 143 ~~~iRlk~~~~~~-~~~~D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~ 221 (314)
T PF00749_consen 143 PAVIRLKVPMESP-IAFRDLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYE 221 (314)
T ss_dssp SEEEEE-SSSTCC-EEEEETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHH
T ss_pred ceeeeeecccccc-cccccCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHH
Confidence 9999999998766 789999999998766 777777888999999999999999999999999999999999999999
Q ss_pred HhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCcc
Q 012516 154 ALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 223 (462)
Q Consensus 154 aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s 223 (462)
+|||++|.|+|.+. ++.+|+|||||+++.+|+.+.+.+|++|+.+++++|+++|++|+++.+|+...|++
T Consensus 222 ~Lg~~~P~~~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~ 292 (314)
T PF00749_consen 222 ALGWPPPPYAHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLGWSPEAIREFFSLDELI 292 (314)
T ss_dssp HCTSSS-EEEEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHH
T ss_pred HhCCCCcceEeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHH
Confidence 99999999999994 89999999999999887666677777777777777777777777777777666654
No 20
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=2.4e-54 Score=418.40 Aligned_cols=176 Identities=28% Similarity=0.489 Sum_probs=169.5
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
||++||++++||+|+++|+++|++|+++|+||+
T Consensus 65 LGl~~d~~~~qS~r~~~y~~~~~~Li~~G~aY~----------------------------------------------- 97 (240)
T cd09287 65 LGVKWDEVVIASDRIELYYEYARKLIEMGGAYV----------------------------------------------- 97 (240)
T ss_pred cCCCCCCccchhccHHHHHHHHHHHHHcCCccc-----------------------------------------------
Confidence 799999999999999999999999999999998
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCC
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 160 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P 160 (462)
||++|++|+++|||||||||||++|||||||||+||++||++|+||+++|||+.|
T Consensus 98 -------------------------~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P 152 (240)
T cd09287 98 -------------------------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYP 152 (240)
T ss_pred -------------------------CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCC
Confidence 3344566778899999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHH
Q 012516 161 YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240 (462)
Q Consensus 161 ~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~ 240 (462)
.|+|+|+++..|+|||||+++.+|++|.+.||||||++|+++||++|++|+||+||+..||||++++.+++++|+++||+
T Consensus 153 ~~~H~pll~~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~ 232 (240)
T cd09287 153 ETIHWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRK 232 (240)
T ss_pred cEEeeeeecCCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCc
Q 012516 241 ELNKTAPR 248 (462)
Q Consensus 241 ~l~~~~~r 248 (462)
+|++.|+|
T Consensus 233 ~l~~~~~r 240 (240)
T cd09287 233 LIDPRANR 240 (240)
T ss_pred HhccCCCC
Confidence 99999987
No 21
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.1e-52 Score=438.82 Aligned_cols=211 Identities=21% Similarity=0.284 Sum_probs=190.5
Q ss_pred CCcccCC--------ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCCCCCCChhHHHHH
Q 012516 1 MGWEPFK--------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKL 64 (462)
Q Consensus 1 LGl~wD~--------~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~~R~~~~ee~l~~ 64 (462)
|||+||+ ||+||+|+++|+++|++|+++|+||+||||+|||++.|+ ++|+++||+++.++..+
T Consensus 66 lGl~~De~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~- 144 (476)
T PRK01406 66 LGLDWDEGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAA- 144 (476)
T ss_pred CCCCCCCCCccCCCCceehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHH-
Confidence 7999994 699999999999999999999999999999999998864 46999999999987664
Q ss_pred HHHHhCCcccCCceEEEEeecCC--------------CCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCC
Q 012516 65 FEDMRNGRIEEGKATLRMKQDMQ--------------NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE 130 (462)
Q Consensus 65 ~~~m~~G~~~~~~~~lR~K~d~~--------------~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~ 130 (462)
.+.+| .++|+|+|++.. .++..++|+||+|++ ++|||+||+|||||+|
T Consensus 145 --~~~~g----~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsD------------G~ptY~~a~vVdD~~~ 206 (476)
T PRK01406 145 --RLAAG----EPPVIRFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILRSD------------GTPTYNFAVVVDDHLM 206 (476)
T ss_pred --HHhCC----CCeeEEEEcCCCCceEEEEeccceEEeccccCCCcEEEecC------------CCccccchHHHHHHHc
Confidence 45555 489999998642 456778999999986 5999999999999999
Q ss_pred ccceEeeccccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCC
Q 012516 131 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVT 209 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~ 209 (462)
+|||||||+||+++||+|.++|++|||++|.|.|+|. ++.+|.|||||++. .+|.+||++||.
T Consensus 207 ~ithvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~ 270 (476)
T PRK01406 207 GITHVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYL 270 (476)
T ss_pred CCCEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCC
Confidence 9999999999999999999999999999999999997 58999999999962 379999999999
Q ss_pred HHHHHHHHHHcCcc----------------------CCCccccHHHHHHHHHHhhhccC
Q 012516 210 STSINAFVQGIGIS----------------------RSDSLIRLDRLEYHIREELNKTA 246 (462)
Q Consensus 210 peAi~~f~~~lG~s----------------------~~~~~~~~~~l~~~nr~~l~~~~ 246 (462)
|+||.||++.+||| ++++.||+++|+|+|+++|...+
T Consensus 271 p~Ai~n~l~~lG~s~~~~e~~~~~~~i~~f~l~~~~~s~~~fd~~kL~~~N~~~i~~~~ 329 (476)
T PRK01406 271 PEALLNYLALLGWSHGDQEIFSLEELIELFDLERVSKSPARFDIKKLDWLNGHYIRELD 329 (476)
T ss_pred HHHHHHHHHHhCCCCCccccCCHHHHHHhcChhhCCCCCccccHHHHHHHHHHHHHhCC
Confidence 99999999999986 46779999999999999998765
No 22
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7e-52 Score=437.43 Aligned_cols=208 Identities=21% Similarity=0.269 Sum_probs=186.1
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCCCCCCChhHHHHHHHHHhCC
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNG 71 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~~R~~~~ee~l~~~~~m~~G 71 (462)
|||+|| .||+||+|+++|+++|++|+++|+||+||||+++|++.|+ ++|++.||+++.++. .
T Consensus 66 LGl~wDe~py~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-------~-- 136 (513)
T PRK14895 66 LGLDWNGEVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-------P-- 136 (513)
T ss_pred cCCCCCCCceeEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-------h--
Confidence 799999 6999999999999999999999999999999999998874 469999999887632 1
Q ss_pred cccCCceEEEEeecCC--------------CCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEee
Q 012516 72 RIEEGKATLRMKQDMQ--------------NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLC 137 (462)
Q Consensus 72 ~~~~~~~~lR~K~d~~--------------~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviR 137 (462)
.++++++|||++.. .++..++|+||+|++ +.||||||+|||||+||||||||
T Consensus 137 --~~~~~~iR~k~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsD------------G~ptY~~a~vVDD~~m~ithVIR 202 (513)
T PRK14895 137 --TDIKPVIRLKTPREGSITIHDTLQGEVVIENSHIDDMVLLRAD------------GTATYMLAVVVDDHDMGITHIIR 202 (513)
T ss_pred --cCCCeeEEEEcCCCCceEEEeecccceecccccCCCcEEEEeC------------CCcchhhHHHHHHHhcCCCEEEE
Confidence 23588999999853 467789999999997 58999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHH
Q 012516 138 TLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAF 216 (462)
Q Consensus 138 g~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f 216 (462)
|+||++|||+|++||++|||..|.|.|+|.+ +.+|.|||||+++. +|+.||++||+|+||+||
T Consensus 203 G~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g~KLSKR~g~~----------------~i~~~r~~G~~Peai~n~ 266 (513)
T PRK14895 203 GDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADGAKLSKRHGAL----------------GIEAYKDMGYLPESLCNY 266 (513)
T ss_pred CchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCCCccccccCch----------------hHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999985 69999999999754 588999999999999999
Q ss_pred HHHcCcc----------------------CCCccccHHHHHHHHHHhhhccCC
Q 012516 217 VQGIGIS----------------------RSDSLIRLDRLEYHIREELNKTAP 247 (462)
Q Consensus 217 ~~~lG~s----------------------~~~~~~~~~~l~~~nr~~l~~~~~ 247 (462)
+++|||| ++++.||++||.|+|.++|...+.
T Consensus 267 la~LG~s~~~~e~~~~~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~~l~~ 319 (513)
T PRK14895 267 LLRLGWSHGDDEIISMTQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLRMLDN 319 (513)
T ss_pred HHHhCCCCCCcCCCCHHHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHHhCCH
Confidence 9999985 466788888888888888877654
No 23
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=1.3e-51 Score=411.64 Aligned_cols=200 Identities=17% Similarity=0.167 Sum_probs=171.4
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHh----C--CCCCCCCCCCChhHHHHHHHHHhCCcc
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----E--KKMNSPWRDRPIAESLKLFEDMRNGRI 73 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r----~--~~~~~~~R~~~~ee~l~~~~~m~~G~~ 73 (462)
|||+|| +||+||+|+++|+++|++|+++|+||+|+||++||++.| + +.|+++||+++.+++.
T Consensus 67 lGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~----------- 135 (299)
T PRK05710 67 LGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRN----------- 135 (299)
T ss_pred CCCCCCCCceEeeccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccC-----------
Confidence 799999 599999999999999999999999999999999998876 2 4699999999876531
Q ss_pred cCCceEEEEeec--------------CCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeecc
Q 012516 74 EEGKATLRMKQD--------------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTL 139 (462)
Q Consensus 74 ~~~~~~lR~K~d--------------~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~ 139 (462)
++++|+|+| +.+++..++||||+|++ ++||||||||||||+|||||||||+
T Consensus 136 ---~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~d------------g~ptY~lA~vVDD~~~gIThVvRG~ 200 (299)
T PRK05710 136 ---PPAWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRAD------------GLFAYQLAVVVDDALQGVTHVVRGA 200 (299)
T ss_pred ---CceEEEEcCCCceEEEEecceeEeeCCCCCCCCEEEEecC------------CCccccchhHHhcccCCCCEEEeCh
Confidence 689999997 23455689999999986 5999999999999999999999999
Q ss_pred ccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHH
Q 012516 140 EFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 218 (462)
Q Consensus 140 e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~ 218 (462)
||++|||+|++||++|||++|.|+|+|. ++.+|+|||||+++.. |.. .|+.|+ |.||++
T Consensus 201 D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g~kLSKr~~~~~----------------i~~---~g~~p~-l~~~l~ 260 (299)
T PRK05710 201 DLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADGQKLSKQNGAPA----------------LDA---AGPLPV-LAAALR 260 (299)
T ss_pred hhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCCCcccccCCccc----------------hhh---cCcCHH-HHHHHH
Confidence 9999999999999999999999999997 5999999999997654 333 899999 999999
Q ss_pred HcCccCCCc--cccH---HHHHHHHHHhhhccC
Q 012516 219 GIGISRSDS--LIRL---DRLEYHIREELNKTA 246 (462)
Q Consensus 219 ~lG~s~~~~--~~~~---~~l~~~nr~~l~~~~ 246 (462)
.|||+.... .+++ +.+++|+-..|.+.+
T Consensus 261 ~lG~~~~~~~~~~~~~~~~~i~~f~~~~~~~~~ 293 (299)
T PRK05710 261 FLGQPPPAADASVEELLAQAVAHWDLTRLPRQA 293 (299)
T ss_pred HcCCCCCccccccccCHHHHHHhCCHhhCCcCC
Confidence 999987532 2333 345666655555444
No 24
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=1e-50 Score=429.67 Aligned_cols=213 Identities=18% Similarity=0.241 Sum_probs=191.1
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCCCCCCChhHHHHHHHHHhCC
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNG 71 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~~R~~~~ee~l~~~~~m~~G 71 (462)
|||+|| +||+||+|+++|+++|++|+++|+||+||||+++|++.|+ ++|+++||+++.+++.+.+ .+
T Consensus 63 lGl~~de~~~~QS~r~~~y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~---~~- 138 (470)
T TIGR00464 63 LGISWDEGPYYQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKL---AK- 138 (470)
T ss_pred CCCCCCCCeeehhCCHHHHHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHH---hc-
Confidence 799999 7999999999999999999999999999999999998764 5699999999998876532 22
Q ss_pred cccCCceEEEEeecCCC--------------CCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEee
Q 012516 72 RIEEGKATLRMKQDMQN--------------DNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLC 137 (462)
Q Consensus 72 ~~~~~~~~lR~K~d~~~--------------~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviR 137 (462)
++++|+|+|+|... ++..++|+||+|++ ++|||+||++|||++||||||||
T Consensus 139 ---g~~~~iR~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rsd------------G~ptY~~A~~vdD~~~~ithvIr 203 (470)
T TIGR00464 139 ---GIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELDDFVILRSD------------GSPTYNFAVVVDDYLMKITHVIR 203 (470)
T ss_pred ---CCCceEEEEcCCCCceeEEecccceEEecCccCCCeEEEecC------------CCcccccHHHHHHHhCCCCEEEE
Confidence 36899999998532 56778899999987 59999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHH
Q 012516 138 TLEFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAF 216 (462)
Q Consensus 138 g~e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f 216 (462)
|+||+++|++|.+|+++|||+.|.|.|+|. ++.+|+|||||++ ..||.+|+++||.|+|+.||
T Consensus 204 G~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g~kLSKR~g----------------~~~l~~l~~~g~~p~a~~~~ 267 (470)
T TIGR00464 204 GEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDGKKLSKRDG----------------ATSIMQFKEQGYLPEALINY 267 (470)
T ss_pred CchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCCccccccCC----------------CccHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999999999997 6889999999996 24799999999999999999
Q ss_pred HHHcCcc-----------------------CCCccccHHHHHHHHHHhhhccCCc
Q 012516 217 VQGIGIS-----------------------RSDSLIRLDRLEYHIREELNKTAPR 248 (462)
Q Consensus 217 ~~~lG~s-----------------------~~~~~~~~~~l~~~nr~~l~~~~~r 248 (462)
++.+||+ +++..||+++|.|+|+++|...+..
T Consensus 268 ~~~lG~~~~~~~e~~~~~~~i~~f~l~~~~~~~~~fd~~kL~~~N~~~l~~l~~~ 322 (470)
T TIGR00464 268 LALLGWSPPDDQEFFSLEELIEIFSLNRVSKSPAKFDWKKLQWLNAHYIKELPDE 322 (470)
T ss_pred HHHcCCCCCCccccCCHHHHHHhcCcccCCCCCCeecHHHHHHHHHHHHHhCCHH
Confidence 9999974 3566899999999999999887644
No 25
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=8.9e-50 Score=394.19 Aligned_cols=197 Identities=17% Similarity=0.158 Sum_probs=160.4
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHh-C--CCCCCCCCCCChhHHHHHHHHHhCCcccCC
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR-E--KKMNSPWRDRPIAESLKLFEDMRNGRIEEG 76 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r-~--~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~ 76 (462)
|||+|| .||+||+|+++|+++|++|+++|+||+||||+|||++.| . +.|+++||+ +. . ...++
T Consensus 62 LGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~---~---------~~~~~ 128 (272)
T TIGR03838 62 YGLHWDGEVVYQSQRHALYQAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GL---L---------GRPAR 128 (272)
T ss_pred cCCCCCCCeeeeeCCHHHHHHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-cc---c---------cccCC
Confidence 799999 579999999999999999999999999999999999885 3 468899998 33 0 12346
Q ss_pred ceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcccc-----ccccceeeeeecCCCccceEeeccccccccHHHHHH
Q 012516 77 KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWL 151 (462)
Q Consensus 77 ~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~-----~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l 151 (462)
++++|+|++. .+..+.|.|.+++.. .|+...++|++ +||||||||||||+|||||||||+||++|||+|++|
T Consensus 129 ~~~~Rlk~~~--~~~~~~D~~~g~~~~-~~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l 205 (272)
T TIGR03838 129 PAAWRLRVPD--GVIAFDDRLQGPQQQ-DLAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYL 205 (272)
T ss_pred CceEEEecCC--CCceEEEeeeeEEEe-cCcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHH
Confidence 8999999984 345666776666642 33444445655 999999999999999999999999999999999999
Q ss_pred HHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCC--cc
Q 012516 152 LHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD--SL 228 (462)
Q Consensus 152 ~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~--~~ 228 (462)
|++|||++|.|+|+|+ ++.+|+|||||+++.+|+++ +| ++++.+++.++||+..+ ..
T Consensus 206 ~~aLg~~~P~y~H~pll~~~~g~kLSKR~~~~~i~~~------~~--------------~~~~~~~l~~lG~~~~~~~~~ 265 (272)
T TIGR03838 206 QRLLGLPPPRYLHLPLVVNADGEKLSKQNGAPALDLS------HP--------------LPALLAALRFLGLPPPPELAA 265 (272)
T ss_pred HHHhCCCCCeEEechhhhCCCCCeeeccCCccchhcC------Cc--------------HHHHHHHHHHcCCCCCccccc
Confidence 9999999999999997 59999999999998877653 23 46777777777877543 24
Q ss_pred ccHHH
Q 012516 229 IRLDR 233 (462)
Q Consensus 229 ~~~~~ 233 (462)
++++.
T Consensus 266 ~~~~~ 270 (272)
T TIGR03838 266 ASPAE 270 (272)
T ss_pred CCHHH
Confidence 45443
No 26
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=100.00 E-value=1.6e-47 Score=356.49 Aligned_cols=171 Identities=44% Similarity=0.739 Sum_probs=142.2
Q ss_pred CCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccccCCCCEEEEeec
Q 012516 246 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYA 325 (462)
Q Consensus 246 ~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~V~Lk~~ 325 (462)
|+|+|||.||++|.|+|+|++..+++++|+||+ +|++|+|+++|+++||||++|| +||++|++|+||++
T Consensus 1 A~R~maV~dPv~v~I~n~~~~~~~~~~~p~hPk---~~~~G~r~v~~~~~i~Ie~~D~--------~~l~~g~~v~L~~~ 69 (174)
T PF03950_consen 1 APRYMAVLDPVKVKITNFPEDEPEEIEVPLHPK---NPELGTREVPFSKTIYIERSDF--------FRLAPGKEVRLMYW 69 (174)
T ss_dssp SEEE-EECSEEEEEECT--SSSEEEEEEESSTT----GGG-EEEEEECSEEEEEGGG----------SEETTCEEEETTT
T ss_pred CCcEEEECCCEEEEEEcCCCCCEEEEEecCCCC---CccCceEEEEECceEEEEhhHh--------hhccCCCEEEEecc
Confidence 689999999999999999987778999999999 7999999999999999999995 56999999999999
Q ss_pred eeEEEEEEEecCCCCCEEEEEEEEeCCCC---CCCceeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCcccccccCCC
Q 012516 326 FPIKCTEVILSDDKETILHIRAEYDPSKK---TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNP 402 (462)
Q Consensus 326 ~~i~~~~~~~~d~~g~v~~l~~~~~~~~~---kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~~~~~~~iN~ 402 (462)
|||+|++++ +|++|.|++++|+|++++. +|++++|||||+ .++++|++|+|++||++++ ++ +++ +||
T Consensus 70 ~ni~i~~~~-~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~----~~~v~~e~r~yd~Lf~~~~-~~--~~~--inp 139 (174)
T PF03950_consen 70 GNIKITSIE-KDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSA----KDSVPVEVRLYDHLFTVDN-DE--DDL--INP 139 (174)
T ss_dssp EEEEEEEEE-E-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEG----CC-EEEEEEEE--SBSSS--GG--TGG--B-T
T ss_pred ceEEEEEee-ecCCCCEEEEEEEEecccccCCcccCcEEEEccC----CCCeeeEEEEehhhcCCCc-cc--cce--ECC
Confidence 999999998 8889999999999998653 578889999998 6899999999999999887 54 555 999
Q ss_pred CCceeecceEeccccccCCCCCeEEEEEeeeEEEe
Q 012516 403 DSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD 437 (462)
Q Consensus 403 ~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD 437 (462)
+|+.++..|++|++++++++|++|||||+|||+||
T Consensus 140 ~s~~~~~~~~~E~~~~~~k~g~~vQfER~Gyf~vD 174 (174)
T PF03950_consen 140 NSLKVVKNGLVEPALKNLKPGDIVQFERRGYFRVD 174 (174)
T ss_dssp TSEEEEEEEEE-GGGGGS-TT-EEEETTTEEEEEE
T ss_pred CCcEEccCEEEchhHHhCCCCCEEeEEEeeEEEeC
Confidence 99998668999999999999999999999999998
No 27
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=1.3e-41 Score=328.13 Aligned_cols=142 Identities=34% Similarity=0.494 Sum_probs=133.8
Q ss_pred CCcccCC-ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceE
Q 012516 1 MGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 79 (462)
Q Consensus 1 LGl~wD~-~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~ 79 (462)
|||+||+ ||+||+|+++|+++|++|+++|
T Consensus 63 lGl~wd~~~~~QS~r~~~y~~~~~~L~~~g-------------------------------------------------- 92 (230)
T cd00418 63 LGLDWDEGPYRQSDRFDLYRAYAEELIKKG-------------------------------------------------- 92 (230)
T ss_pred cCCCCCCCeeehhcCHHHHHHHHHHHHHcC--------------------------------------------------
Confidence 7999996 9999999999999999999999
Q ss_pred EEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCC
Q 012516 80 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 159 (462)
Q Consensus 80 lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~ 159 (462)
++|||||||||||++|||||||||+||++||++|+||+++|||++
T Consensus 93 -----------------------------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~ 137 (230)
T cd00418 93 -----------------------------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEP 137 (230)
T ss_pred -----------------------------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCC
Confidence 389999999999999999999999999999999999999999999
Q ss_pred CeEEEEeee-cCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccC--------------
Q 012516 160 PYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR-------------- 224 (462)
Q Consensus 160 P~~~h~~~l-~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~-------------- 224 (462)
|.|+|+|+| +.+|+|||||+++ +||++||++|++|+||.+|++.||++.
T Consensus 138 P~~~H~pll~~~~g~KLSKr~~~----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~ 201 (230)
T cd00418 138 PRFYHFPRLLLEDGTKLSKRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIA 201 (230)
T ss_pred CeEEEeeeeeCCCCCCccCcCCC----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHH
Confidence 999999986 5667999999963 479999999999999999999999987
Q ss_pred ---------CCccccHHHHHHHHHHhhh
Q 012516 225 ---------SDSLIRLDRLEYHIREELN 243 (462)
Q Consensus 225 ---------~~~~~~~~~l~~~nr~~l~ 243 (462)
+++.||+++|+++|+++|+
T Consensus 202 ~f~~~~~~~~~~~~d~~kL~~~N~~~l~ 229 (230)
T cd00418 202 AFSVERVNSADATFDWAKLEWLNREYIR 229 (230)
T ss_pred hcCHhhCCCCCcccCHHHHHHHHHHHhc
Confidence 6778999999999999986
No 28
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=6e-37 Score=297.78 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=118.2
Q ss_pred CCcccCC---------ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCC
Q 012516 1 MGWEPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 71 (462)
Q Consensus 1 LGl~wD~---------~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G 71 (462)
|||+||+ +|+||+|+++|++++++|+++|
T Consensus 63 lGl~~d~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g------------------------------------------ 100 (239)
T cd00808 63 LGLDWDEGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG------------------------------------------ 100 (239)
T ss_pred cCCCCCcCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC------------------------------------------
Confidence 7999998 9999999999999999999988
Q ss_pred cccCCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHH
Q 012516 72 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWL 151 (462)
Q Consensus 72 ~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l 151 (462)
+ ++|||+||+||||++|||||||||+||+++|++|++|
T Consensus 101 ------------------------------d------------g~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l 138 (239)
T cd00808 101 ------------------------------D------------GFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILL 138 (239)
T ss_pred ------------------------------C------------CCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHH
Confidence 1 5999999999999999999999999999999999999
Q ss_pred HHHhCCCCCeEEEEeee-cCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCC
Q 012516 152 LHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 225 (462)
Q Consensus 152 ~~aLg~~~P~~~h~~~l-~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~ 225 (462)
+++|||++|.|+|++++ +.+|.|||||+++ +||++||++|++|+||.+|++.+|++..
T Consensus 139 ~~aLg~~~p~~~h~pll~~~~g~KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~ 197 (239)
T cd00808 139 YEALGWEPPKFAHLPLILNPDGKKLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPP 197 (239)
T ss_pred HHHcCCCCCceEeeccccCCCCCcccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCC
Confidence 99999999999999985 8999999999964 5899999999999999999999998644
No 29
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.27 E-value=6.2e-12 Score=120.83 Aligned_cols=123 Identities=15% Similarity=0.034 Sum_probs=97.8
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
||+.+|...+.|++.+...+..++|+++|.||.-. |..++
T Consensus 81 L~i~~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~----------------------------------------g~~~~ 120 (212)
T cd00671 81 LDVRFDVWFGESSYLGLMGKVVELLEELGLLYEED----------------------------------------GALWL 120 (212)
T ss_pred hCCcCceecchhhhhhHHHHHHHHHHHCCCEEEeC----------------------------------------CcEEE
Confidence 68888877788888888899999999999997211 11222
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccc---eeeeeecCCCccceE--eeccccccccHHHHHHHHHh
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYFWLLHAL 155 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~---fA~~VDD~l~gITHv--iRg~e~l~~t~~q~~l~~aL 155 (462)
.+. ......|+|+.|++ +.|||. +|+.++++.+++||| |+|.||..++++|..++++|
T Consensus 121 ~~~-----~~~~~~d~vl~rsd------------G~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~l 183 (212)
T cd00671 121 DLT-----EFGDDKDRVLVRSD------------GTYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELL 183 (212)
T ss_pred ech-----hhCCCCCeEEEECC------------CCccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHc
Confidence 110 01124689999987 478888 799999999999999 99999999999999999999
Q ss_pred CCC-CCeEEEE--eeecCC-Ccccccccc
Q 012516 156 GLY-QPYVWEY--SRLNVS-NTVMSKRKL 180 (462)
Q Consensus 156 g~~-~P~~~h~--~~l~~~-g~kLSKR~~ 180 (462)
|+. .|.+.|+ +.+.+. |.|||||++
T Consensus 184 g~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 184 GYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 997 7788888 466555 899999973
No 30
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=98.46 E-value=1.3e-06 Score=93.66 Aligned_cols=196 Identities=18% Similarity=0.201 Sum_probs=121.3
Q ss_pred CCc-ccCCceecccCHHHHHHHHHHHHhCCCeEE-----eCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCccc
Q 012516 1 MGW-EPFKITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 74 (462)
Q Consensus 1 LGl-~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~-----c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~ 74 (462)
||+ .+|...+.|++.+.+.+++++|+++|+||. .||...- ...|.-+ .++. ++|..|.
T Consensus 104 Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~----~~yg~ls---~~~~-------~~~~~~~-- 167 (463)
T PRK00260 104 LNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKF----PDYGKLS---GRNL-------DELQAGA-- 167 (463)
T ss_pred cCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccc----cccccCC---CCCH-------HHHhccC--
Confidence 688 566666788999999999999999999995 4443221 1112111 1122 2344442
Q ss_pred CCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccceee-eeecCCCccceE--eeccc----cccccH
Q 012516 75 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH-CIVDSIENITHS--LCTLE----FETRRA 146 (462)
Q Consensus 75 ~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~-~VDD~l~gITHv--iRg~e----~l~~t~ 146 (462)
| ++......+-+||++++....-+|...+.| .+-|..|.-| +.-....|.+-- .=|.| |..|.-
T Consensus 168 ------~--~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~nei 239 (463)
T PRK00260 168 ------R--VEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEI 239 (463)
T ss_pred ------c--CCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHH
Confidence 1 122122233489999997654455444445 3588888877 444444444333 34566 555554
Q ss_pred HHHHHHHHhCCCCC--eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccC
Q 012516 147 SYFWLLHALGLYQP--YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 224 (462)
Q Consensus 147 ~q~~l~~aLg~~~P--~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~ 224 (462)
.|-. ...| .++ .+.|.+++..+|.|||||.+.. .|+..+.+. |.|++++=|+.. +--.
T Consensus 240 aqs~--a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~---------------i~~~dll~~-~~~d~lR~~ll~-~~~~ 299 (463)
T PRK00260 240 AQSE--AATG-KPFANYWMHNGFVTVNGEKMSKSLGNF---------------FTIRDLLKK-YDPEVLRFFLLS-AHYR 299 (463)
T ss_pred HHHH--HhcC-CCcceEEEEccEEccCCCcccCcCCCC---------------CCHHHHHHH-cCchHhHHHHHh-CCCC
Confidence 4432 2256 444 4677788999999999998743 356666664 999999998886 3344
Q ss_pred CCccccHHHHHHHHHH
Q 012516 225 SDSLIRLDRLEYHIRE 240 (462)
Q Consensus 225 ~~~~~~~~~l~~~nr~ 240 (462)
++..|+.+.|....+.
T Consensus 300 ~~~~fs~~~l~~a~~~ 315 (463)
T PRK00260 300 SPLNFSEEALEQAKKA 315 (463)
T ss_pred CCCccCHHHHHHHHHH
Confidence 5667888777655443
No 31
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=98.27 E-value=1.4e-05 Score=85.76 Aligned_cols=198 Identities=18% Similarity=0.208 Sum_probs=119.3
Q ss_pred CCcccCC-ceecccCHHHHHHHHHHHHhCCCeEEeC------CCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcc
Q 012516 1 MGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDH------QTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 73 (462)
Q Consensus 1 LGl~wD~-~~~QS~r~~~y~~~a~~Li~~G~AY~c~------cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~ 73 (462)
||+.+|. ....|++.+.+.++.++|+++|.||.+. |.... +.| +....+.. ++|..|.
T Consensus 102 LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~------~~y-G~ls~~~~-------~~~~~~~- 166 (465)
T TIGR00435 102 LNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF------KDY-GKLSKQDL-------DQLEAGA- 166 (465)
T ss_pred hCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc------chh-ccCCCCCH-------HHHhccc-
Confidence 6888775 4588999999999999999999999654 32111 111 11111222 2344442
Q ss_pred cCCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccceeee----------eecCCCccceEeeccccc
Q 012516 74 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFE 142 (462)
Q Consensus 74 ~~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~l~gITHviRg~e~l 142 (462)
|...+ ....+-.||++++....-+|.....| .|-|.-|.-|+ +|=|.-|+.|+.- |.
T Consensus 167 -------~~~~~--~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fp---Hh 234 (465)
T TIGR00435 167 -------RVDVD--EAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFP---HH 234 (465)
T ss_pred -------ccCcc--cccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccc---hH
Confidence 11111 11233489999987643334433444 35777777665 4434444444432 23
Q ss_pred cccHHHHHHHHHhCCCCCeE-EEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcC
Q 012516 143 TRRASYFWLLHALGLYQPYV-WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 221 (462)
Q Consensus 143 ~~t~~q~~l~~aLg~~~P~~-~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG 221 (462)
.|-..|-.. ..|.+.+.+ .|.+++.++|.|||||.+.. .|++.+.+. +.|+|++=|+..-.
T Consensus 235 ene~aqs~a--~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~---------------i~~~dll~~-~~~dalR~~ll~~~ 296 (465)
T TIGR00435 235 ENEIAQSEA--AFGKQLAKYWMHNGFLMIDNEKMSKSLGNF---------------FTVRDVLKN-YDPEILRYFLLSVH 296 (465)
T ss_pred HHHHHHHHH--hcCCCCCcEEEEeeEEEecCccccccCCCc---------------CCHHHHHHH-CCHHHHHHHHHhCC
Confidence 333344322 246444444 78788999999999999743 367777765 99999999888654
Q ss_pred ccCCCccccHHHHHHHHHHhhhcc
Q 012516 222 ISRSDSLIRLDRLEYHIREELNKT 245 (462)
Q Consensus 222 ~s~~~~~~~~~~l~~~nr~~l~~~ 245 (462)
-.++..|+++.|....+. +++.
T Consensus 297 -~~~~l~fs~~~l~~a~~~-~~rl 318 (465)
T TIGR00435 297 -YRSPLDFSEELLEAAKNA-LERL 318 (465)
T ss_pred -CCCCCccCHHHHHHHHHH-HHHH
Confidence 355667888887666543 4443
No 32
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.09 E-value=1.9e-05 Score=84.62 Aligned_cols=192 Identities=15% Similarity=0.150 Sum_probs=121.0
Q ss_pred CCcccC--CceecccCHHHHHHHHHHHHhCCCeEE-----eCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHh--CC
Q 012516 1 MGWEPF--KITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMR--NG 71 (462)
Q Consensus 1 LGl~wD--~~~~QS~r~~~y~~~a~~Li~~G~AY~-----c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~--~G 71 (462)
||+.++ .+ ..|++.+...+++++|+++|.||. .||..+ .. ..|.-+ .+..+ +|. .|
T Consensus 112 Lni~~~~~~p-~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~-~~---~YG~ls---~~~l~-------~l~~~~~ 176 (481)
T PRK14534 112 LNIVYPDKVL-VASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC-FK---SYGQMA---GINLN-------DFKDMSV 176 (481)
T ss_pred cCCCCCceec-CccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc-cc---chhhhc---CCCHH-------HHhhhcc
Confidence 677777 34 578999999999999999999993 444333 11 111111 12222 222 22
Q ss_pred cccCCceEEEEeecCCCCCCcCCCcEEEEEec---CCCCCCCCcc-ccccccceeee----------eecCCCccceEee
Q 012516 72 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKF---TPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLC 137 (462)
Q Consensus 72 ~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~---~~h~~~gd~~-~~~PtY~fA~~----------VDD~l~gITHviR 137 (462)
. | +++.....+..||++++... .-+|.-...| .|+|..|.-|+ +|=|.-|+.|+.=
T Consensus 177 ~--------~--v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~DliFP 246 (481)
T PRK14534 177 S--------R--VEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHIGV 246 (481)
T ss_pred C--------c--CCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccCCC
Confidence 1 1 12212223448999998642 1133333344 47998887776 5666666666642
Q ss_pred ccccccccHHHHHHHHHhCCCCCeE-EEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHH
Q 012516 138 TLEFETRRASYFWLLHALGLYQPYV-WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAF 216 (462)
Q Consensus 138 g~e~l~~t~~q~~l~~aLg~~~P~~-~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f 216 (462)
|..|-+.|.. .+.|.+.+.| .|-++|.++|.|||||.+. ..|++.+.+.|+.|+|++=|
T Consensus 247 ---HHene~Aqs~--a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~alR~~ 306 (481)
T PRK14534 247 ---HHINEIAIAE--CYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDFRYF 306 (481)
T ss_pred ---cchhHHHHHh--hhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHHHHH
Confidence 4556666652 2236555554 4556789999999999974 34899999999999998877
Q ss_pred HHHcCccCCCccccHHHHHHHH
Q 012516 217 VQGIGISRSDSLIRLDRLEYHI 238 (462)
Q Consensus 217 ~~~lG~s~~~~~~~~~~l~~~n 238 (462)
+. .+--.++..|+++.|+..-
T Consensus 307 ll-s~~yr~~l~Fs~e~l~~a~ 327 (481)
T PRK14534 307 CL-TAHYRTQLKFTFNNLKACK 327 (481)
T ss_pred HH-hCCCCCCCCCCHHHHHHHH
Confidence 44 3444566788998887664
No 33
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=98.08 E-value=5.4e-06 Score=89.79 Aligned_cols=169 Identities=18% Similarity=0.090 Sum_probs=104.8
Q ss_pred CCcccCCceecccC--HHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCce
Q 012516 1 MGWEPFKITYTSDY--FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKA 78 (462)
Q Consensus 1 LGl~wD~~~~QS~r--~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~ 78 (462)
||+.+|..++.|+- .+...++.++|.++|.+|.-. +|..
T Consensus 193 LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~---------------------------------------~Ga~ 233 (507)
T PRK01611 193 LGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVES---------------------------------------DGAL 233 (507)
T ss_pred cCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEee---------------------------------------CCcE
Confidence 68888865566644 457899999999999998200 0122
Q ss_pred EEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceE--eeccccccccHHHHHHHHHhC
Q 012516 79 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS--LCTLEFETRRASYFWLLHALG 156 (462)
Q Consensus 79 ~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHv--iRg~e~l~~t~~q~~l~~aLg 156 (462)
+++..- .. .-.|.|+.|+++++ .|.|=|+|..++-+.. .+++ |.|.||....++...+.++||
T Consensus 234 ~~~~~~---~~--~~~~~vl~ksdG~~---------~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~~~~~~lg 298 (507)
T PRK01611 234 WVRLTE---FG--DDKDRVLIKSDGTY---------TYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLKAALKALG 298 (507)
T ss_pred EEEchh---hC--CCCCeEEEECCCCc---------cchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHHHHHHHHcC
Confidence 222110 00 01378999987432 1222235555444433 4566 899999999999999999999
Q ss_pred CCCCe---EEEEe--e-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCH----------------HHHH
Q 012516 157 LYQPY---VWEYS--R-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTS----------------TSIN 214 (462)
Q Consensus 157 ~~~P~---~~h~~--~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~p----------------eAi~ 214 (462)
+.++. +.|.+ . ++-+|.|||||++... ++..+.+.++.. .||+
T Consensus 299 ~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i---------------~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR 363 (507)
T PRK01611 299 YDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVV---------------TLDDLLDEAVGRARELIEEKEIAEAVGIDAVR 363 (507)
T ss_pred CCcccceEEEEEEEEeeECCCCCcccCCCCcee---------------EHHHHHHHHHHHHHHHHHhhhhhhhhccceeE
Confidence 87553 56633 3 3456899999997532 455555553333 4444
Q ss_pred HHHHHcCccCCCccccHHHHHHHHH
Q 012516 215 AFVQGIGISRSDSLIRLDRLEYHIR 239 (462)
Q Consensus 215 ~f~~~lG~s~~~~~~~~~~l~~~nr 239 (462)
=|+... -..++..|||+++..+++
T Consensus 364 ~~~L~~-~~~~~~~Fd~~~~~~~~~ 387 (507)
T PRK01611 364 YFDLSR-SRDKDLDFDLDLALSFEG 387 (507)
T ss_pred ehhhhc-CCCCCCccCHHHHHhhcC
Confidence 443332 334566899999776654
No 34
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.07 E-value=9.2e-07 Score=79.52 Aligned_cols=61 Identities=20% Similarity=0.087 Sum_probs=56.9
Q ss_pred cceeeeeecCCCcc---ceEeeccccccccHHHHHHHHHhCCC-CCeEEEEeeecC-CCccccccc
Q 012516 119 YDYAHCIVDSIENI---THSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNV-SNTVMSKRK 179 (462)
Q Consensus 119 Y~fA~~VDD~l~gI---THviRg~e~l~~t~~q~~l~~aLg~~-~P~~~h~~~l~~-~g~kLSKR~ 179 (462)
|++.+++|+...++ ||+++|.|+..+.+.+.++.+++|+. +|...||++|.. +|+|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence 99999999999999 99999999999999999999999885 799999999876 469999985
No 35
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=97.92 E-value=2.7e-05 Score=81.43 Aligned_cols=205 Identities=17% Similarity=0.095 Sum_probs=121.9
Q ss_pred CCc-ccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCH--H---HHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCccc
Q 012516 1 MGW-EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTP--E---EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 74 (462)
Q Consensus 1 LGl-~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~--e---el~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~ 74 (462)
||+ .+|...+.|++.+...++.++|+++|.||.-.-.. . ++.+....|+-+ ++..+ +|..|.
T Consensus 90 Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls---~~~~~-------~~~~~~-- 157 (384)
T PRK12418 90 LRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYES---GYDRA-------TMLELF-- 157 (384)
T ss_pred hCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhccccc---CCCHH-------HHHhhh--
Confidence 565 67778889999999999999999999999532100 0 000111111111 12222 232210
Q ss_pred CCceEEEEeecCCC-CCCcCCCcEEEEEecCCCCCCCCcc-ccccccceee----------eeecCCCccceEeeccccc
Q 012516 75 EGKATLRMKQDMQN-DNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH----------CIVDSIENITHSLCTLEFE 142 (462)
Q Consensus 75 ~~~~~lR~K~d~~~-~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~----------~VDD~l~gITHviRg~e~l 142 (462)
+. |. ++... ...+-+||+++|....-.|.-...| .|-|..|.-| .+|=|.=|+.++.- |.
T Consensus 158 -~~---~~-~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FP---HH 229 (384)
T PRK12418 158 -AE---RG-GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFP---HH 229 (384)
T ss_pred -cc---cc-cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccc---hh
Confidence 00 00 01101 1233489999997643345444555 4677777665 47777777777754 55
Q ss_pred cccHHHHHHHHHhCC-CCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHc
Q 012516 143 TRRASYFWLLHALGL-YQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI 220 (462)
Q Consensus 143 ~~t~~q~~l~~aLg~-~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~l 220 (462)
.|.-.|-.. ++|- +-+ ...|-++|..+|.||||+.+.. .|+..+.+.|+.|++++=|+. .
T Consensus 230 eneiaq~~a--~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~---------------i~~~ell~~G~d~~~lR~~ll-s 291 (384)
T PRK12418 230 EFSAAHAEA--ATGERRFARHYVHAGMIGLDGEKMSKSRGNL---------------VFVSRLRAAGVDPAAIRLALL-A 291 (384)
T ss_pred HhHHHHHHH--hcCCCCcceEEEECCEECCCCCcccCcCCCc---------------CCHHHHHhccCChhheeEEEe-c
Confidence 555555522 2443 223 3445567999999999998743 367778888999999998875 3
Q ss_pred CccCCCccccHHHHHHHHHHhhhc
Q 012516 221 GISRSDSLIRLDRLEYHIREELNK 244 (462)
Q Consensus 221 G~s~~~~~~~~~~l~~~nr~~l~~ 244 (462)
+--.++..|+.+.|....+ .+++
T Consensus 292 ~~yr~~l~fs~e~l~~a~~-~l~r 314 (384)
T PRK12418 292 GHYRADREWTDAVLAEAEA-RLAR 314 (384)
T ss_pred cCCCCCcccCHHHHHHHHH-HHHH
Confidence 3334456778887766433 3443
No 36
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=97.92 E-value=0.00012 Score=78.75 Aligned_cols=193 Identities=18% Similarity=0.218 Sum_probs=119.4
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEE-----eCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCccc
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 74 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~-----c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~ 74 (462)
||+.++ -..+.|++.+...++.++|+++|.||. .||...- +.|- .-..++.+ +|..|.
T Consensus 114 Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~------~~YG-~Ls~~~~~-------~l~~g~-- 177 (490)
T PRK14536 114 LNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTF------PSYG-SLASAAVE-------DLQAGA-- 177 (490)
T ss_pred cCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcc------cchh-hhcCCCHH-------HhhcCC--
Confidence 677765 345789999999999999999999994 3443110 1111 01112222 344442
Q ss_pred CCceEEEEeecCCCCCCcCCCcEEEEEecC-C--CCCCCCcc-ccccccceeee----------eecCCCccceEeeccc
Q 012516 75 EGKATLRMKQDMQNDNFNMYDLIAYRIKFT-P--HPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLE 140 (462)
Q Consensus 75 ~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~-~--h~~~gd~~-~~~PtY~fA~~----------VDD~l~gITHviRg~e 140 (462)
| ++......+-.||++|+.... + .|.-...| .+-|..|.-|+ +|=|.-|+.++.=
T Consensus 178 ------~--v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFP--- 246 (490)
T PRK14536 178 ------R--IEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRV--- 246 (490)
T ss_pred ------c--CCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCCc---
Confidence 1 111112233489999976421 1 23333344 36787777665 4555555555532
Q ss_pred cccccHHHHHHHHH-hCCCCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHH
Q 012516 141 FETRRASYFWLLHA-LGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 218 (462)
Q Consensus 141 ~l~~t~~q~~l~~a-Lg~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~ 218 (462)
|..|-..|. ++ -|.+.+. ..|-++|.++|.|||||.+. ..|++.+...|+.|+|++=|+.
T Consensus 247 HHeneiAqs---~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR~~ll 308 (490)
T PRK14536 247 HHTNEIAQC---EAATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYRFFLL 308 (490)
T ss_pred chhhHHHHH---HHhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHHHHHH
Confidence 445656664 33 3544444 45556789999999999974 3489999999999999998776
Q ss_pred HcCccCCCccccHHHHHHHHH
Q 012516 219 GIGISRSDSLIRLDRLEYHIR 239 (462)
Q Consensus 219 ~lG~s~~~~~~~~~~l~~~nr 239 (462)
+ .--.++..|+++.|....+
T Consensus 309 s-~~yr~~l~Fs~e~l~~a~~ 328 (490)
T PRK14536 309 G-GHYRSQLAFSWEALKTAKA 328 (490)
T ss_pred h-CCCCCCCCCCHHHHHHHHH
Confidence 6 4445566788888765544
No 37
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=97.70 E-value=0.00013 Score=76.74 Aligned_cols=210 Identities=16% Similarity=0.104 Sum_probs=117.0
Q ss_pred CCcc-cCCceecccCHHHHHHHHHHHHhCCCeEEeCCCH--H---HHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCccc
Q 012516 1 MGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTP--E---EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 74 (462)
Q Consensus 1 LGl~-wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~--e---el~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~ 74 (462)
||+. +|...+.|++.+...+++++|+++|.||.-.-.. . .+.+....|+-+ ++..++ |..|.
T Consensus 117 Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls---~~~~~~-------~~~~~-- 184 (411)
T TIGR03447 117 LRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQFGYES---GYDRAT-------MLELF-- 184 (411)
T ss_pred cCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhcccccc---CCCHHH-------HHhhh--
Confidence 5654 6778889999999999999999999999522000 0 001111112111 122222 22210
Q ss_pred CCceEEEEeecCCC-CCCcCCCcEEEEEecCCCCCCCCcc-ccccccceeeee-ecCCCccceEee--ccccccccHH-H
Q 012516 75 EGKATLRMKQDMQN-DNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI-VDSIENITHSLC--TLEFETRRAS-Y 148 (462)
Q Consensus 75 ~~~~~lR~K~d~~~-~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~~V-DD~l~gITHviR--g~e~l~~t~~-q 148 (462)
+. | .++... ...+-+||++|+....-+|.-...| .|-|..|.-|++ -....|-+-=|+ |.|++-.-.- .
T Consensus 185 -~~---~-~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHhene 259 (411)
T TIGR03447 185 -AE---R-GGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFS 259 (411)
T ss_pred -cc---c-ccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhH
Confidence 00 0 011101 1233489999997643345555556 578888876632 222333333344 5554432221 1
Q ss_pred HHHHHH-hCC-CCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCC
Q 012516 149 FWLLHA-LGL-YQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 225 (462)
Q Consensus 149 ~~l~~a-Lg~-~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~ 225 (462)
+.--.| .|- +-+. +.|-++|..+|.||||+.+.. .|++.+.+.|+.|++++-|++. +--.+
T Consensus 260 iaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~---------------i~~~dl~~~g~dp~~lRl~lls-~~Yr~ 323 (411)
T TIGR03447 260 AAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNL---------------VFVSKLRAAGVDPAAIRLGLLA-GHYRQ 323 (411)
T ss_pred HHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCC---------------CCHHHHHhcCCCcccEEEEEec-CCCCC
Confidence 122223 343 2233 456668999999999998743 3688888899999999988752 22234
Q ss_pred CccccHHHHHHHHHHhhhc
Q 012516 226 DSLIRLDRLEYHIREELNK 244 (462)
Q Consensus 226 ~~~~~~~~l~~~nr~~l~~ 244 (462)
+..++.+.|... ++.+++
T Consensus 324 pl~fs~e~l~~a-~~~l~r 341 (411)
T TIGR03447 324 DRDWTDAVLAEA-EARLAR 341 (411)
T ss_pred CCccCHHHHHHH-HHHHHH
Confidence 556677777553 344444
No 38
>PLN02946 cysteine-tRNA ligase
Probab=97.63 E-value=0.00027 Score=77.07 Aligned_cols=192 Identities=17% Similarity=0.140 Sum_probs=120.8
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEE-----eCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCccc
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 74 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~-----c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~ 74 (462)
||+... -....|++.+...+++++|+++|.||. .||... +. ..|.=+ +++. ++|..|.
T Consensus 161 LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~-f~---~YG~Ls---~~~l-------~~l~~g~-- 224 (557)
T PLN02946 161 LHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK-FP---EYGKLS---GRKL-------EDNRAGE-- 224 (557)
T ss_pred CCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc-ch---hhhhcC---CCCh-------hHhhcCC--
Confidence 566533 346688999999999999999999994 333221 01 111111 1111 2344453
Q ss_pred CCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccceeee----------eecCCCccceEeecccccc
Q 012516 75 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFET 143 (462)
Q Consensus 75 ~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~l~gITHviRg~e~l~ 143 (462)
| ++......+-.||++|+....-.|.-...| .|-|..|.-|+ +|=|-=||.++.= |..
T Consensus 225 ------r--v~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FP---HHE 293 (557)
T PLN02946 225 ------R--VAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP---HHE 293 (557)
T ss_pred ------C--CCcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCC---ccc
Confidence 1 122122233489999997542235444555 57888887776 6667777777753 555
Q ss_pred ccHHHHHHHHHhCCCC-CeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCc
Q 012516 144 RRASYFWLLHALGLYQ-PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGI 222 (462)
Q Consensus 144 ~t~~q~~l~~aLg~~~-P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~ 222 (462)
|--.|..-+ .|... -...|.++++++|.|||||.+.. .|++.+.+. |.|++++=|+..-.
T Consensus 294 NEiAQsea~--~g~~~a~yW~H~G~v~~~G~KMSKSlGN~---------------itl~dll~~-y~~dalR~~lLs~h- 354 (557)
T PLN02946 294 NEIAQSCAA--CCDSNISYWIHNGFVTVDSEKMSKSLGNF---------------FTIRQVIDL-YHPLALRLFLLGTH- 354 (557)
T ss_pred chHHHHHHH--hCCCCCceeeEeeEEEeCCCCcCCcCCCc---------------CCHHHHHHh-cCccceeeeeeccC-
Confidence 555565322 34321 14578889999999999998643 478888775 99999998887644
Q ss_pred cCCCccccHHHHHHHH
Q 012516 223 SRSDSLIRLDRLEYHI 238 (462)
Q Consensus 223 s~~~~~~~~~~l~~~n 238 (462)
-.++..|+++.|....
T Consensus 355 yr~~l~fs~e~L~~a~ 370 (557)
T PLN02946 355 YRSPINYSDVQLESAS 370 (557)
T ss_pred CCCCcEecHHHHHHHH
Confidence 3456678888875553
No 39
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=97.58 E-value=0.001 Score=71.86 Aligned_cols=89 Identities=17% Similarity=0.052 Sum_probs=60.9
Q ss_pred Eeecccccc-ccHHHHHHHHHhCCCCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHH
Q 012516 135 SLCTLEFET-RRASYFWLLHALGLYQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTS 212 (462)
Q Consensus 135 viRg~e~l~-~t~~q~~l~~aLg~~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peA 212 (462)
-+-|.|.+. .+.....+..++|...| .+.+.+++.++|.|||||.+... ++..+.+. +.++|
T Consensus 258 ~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN~i---------------~~~dll~~-~g~Da 321 (511)
T PRK11893 258 HLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGNVI---------------DPFDLVDE-YGVDA 321 (511)
T ss_pred eEecccccccchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCcEE---------------cHHHHHHH-cCcHH
Confidence 344666554 23334455566687777 45566678889999999997432 34455544 78899
Q ss_pred HHHHHHHcCccCCCccccHHHHHH-HHH
Q 012516 213 INAFVQGIGISRSDSLIRLDRLEY-HIR 239 (462)
Q Consensus 213 i~~f~~~lG~s~~~~~~~~~~l~~-~nr 239 (462)
++=|++..+.-.++..|+++.+.. +|.
T Consensus 322 lR~~ll~~~~~~~d~~Fs~~~~~~~~~~ 349 (511)
T PRK11893 322 VRYFLLREIPFGQDGDFSREAFINRINA 349 (511)
T ss_pred HHHHHHhcCCCCcCCCCCHHHHHHHHHH
Confidence 999999887767788899988843 443
No 40
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=97.57 E-value=0.00081 Score=74.47 Aligned_cols=191 Identities=16% Similarity=0.165 Sum_probs=116.0
Q ss_pred CCcccCC-ceecccCHHHHHHHHHHHHhCCCeEE------eCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcc
Q 012516 1 MGWEPFK-ITYTSDYFQELYELAVELIRRGHAYV------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 73 (462)
Q Consensus 1 LGl~wD~-~~~QS~r~~~y~~~a~~Li~~G~AY~------c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~ 73 (462)
||+..+. ....|++.+...+++++|+++|.||. .||.+. ....|.-+ .++. ++|..|.
T Consensus 329 LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~----f~~YG~LS---~~~~-------~~l~~g~- 393 (699)
T PRK14535 329 LGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE----FAAYGQLS---GKSL-------DDLRAGE- 393 (699)
T ss_pred cCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc----cccccccc---CCCh-------HHhcCCC-
Confidence 5776663 45578999999999999999999994 344431 11122111 1122 2344443
Q ss_pred cCCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccceeee----------eecCCCccceEeeccccc
Q 012516 74 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFE 142 (462)
Q Consensus 74 ~~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~l~gITHviRg~e~l 142 (462)
|...+- .-.+-.||++|+....-+|.-...| .|-|..|.-|+ +|=|.=||.|+.= |.
T Consensus 394 -------rve~d~--~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFP---HH 461 (699)
T PRK14535 394 -------RVEVDG--FKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFP---HH 461 (699)
T ss_pred -------cccccc--ccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCC---CC
Confidence 111221 1223489999997543234333444 36676665554 6666667777653 44
Q ss_pred cccHHHHHHHHHhCCC------------C-----CeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHH
Q 012516 143 TRRASYFWLLHALGLY------------Q-----PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 205 (462)
Q Consensus 143 ~~t~~q~~l~~aLg~~------------~-----P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~ 205 (462)
.|--.|-.- +.|.. . -.+.|.+++.++|.||||+.+.. .|++.+.+
T Consensus 462 ENEiAQseA--~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~---------------it~~dlLe 524 (699)
T PRK14535 462 ENEIAQSVG--ATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNF---------------FTIREVLK 524 (699)
T ss_pred ccHHHHHHH--hhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCc---------------CCHHHHHH
Confidence 454455421 12431 1 14677788889999999998743 36777776
Q ss_pred cCCCHHHHHHHHHHcCccCCCccccHHHHHHH
Q 012516 206 RGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 237 (462)
Q Consensus 206 rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~ 237 (462)
. |.|++++=|+.. +--.++..|+.+.|+..
T Consensus 525 ~-ygpdalRl~lLs-shYRspL~fS~e~Le~A 554 (699)
T PRK14535 525 Q-YDPEVVRFFILR-AHYRSPLNYSDAHLDDA 554 (699)
T ss_pred h-CCHHHHHHHHHc-CCCCCCCCcCHHHHHHH
Confidence 4 999999998876 33445556777777654
No 41
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00027 Score=74.93 Aligned_cols=191 Identities=18% Similarity=0.221 Sum_probs=112.8
Q ss_pred CCc-ccCCceecccCHHHHHHHHHHHHhCCCeEEeCC-----CHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCccc
Q 012516 1 MGW-EPFKITYTSDYFQELYELAVELIRRGHAYVDHQ-----TPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 74 (462)
Q Consensus 1 LGl-~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~c-----s~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~ 74 (462)
||+ .+|..-+.|++.+..-+++++||++|.||+-.- +-..+. +.|+-|.. .+.+ ++..|.
T Consensus 103 L~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~---~YG~LS~~--~~le-------~l~~ga-- 168 (464)
T COG0215 103 LNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK---DYGKLSGR--DSLE-------ELQAGA-- 168 (464)
T ss_pred hCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccch---hhHhhcCC--CChh-------HHhhcc--
Confidence 566 457666799999999999999999999998631 000011 11111111 1111 233332
Q ss_pred CCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccc----------eeeeeecCCCccceEeecccccc
Q 012516 75 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYD----------YAHCIVDSIENITHSLCTLEFET 143 (462)
Q Consensus 75 ~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~----------fA~~VDD~l~gITHviRg~e~l~ 143 (462)
|.-.+-...| -.|||+|+....-.|.-...| .|-|-.| |...+|=|-=|+.++.= |..
T Consensus 169 ------r~~~~~~Krn--p~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFP---HHE 237 (464)
T COG0215 169 ------RVEVDEEKRN--PLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFP---HHE 237 (464)
T ss_pred ------ccccccccCC--chhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCC---Ccc
Confidence 1112111233 379999998654445555555 2455544 44455556566665542 344
Q ss_pred ccHHHHHHHHHh-CCCC-C-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHc
Q 012516 144 RRASYFWLLHAL-GLYQ-P-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI 220 (462)
Q Consensus 144 ~t~~q~~l~~aL-g~~~-P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~l 220 (462)
|.-.|. +|. |-++ - .+.|-+.|+++|.||||+-+. +.||+.+.+. +.|++|+-|+.+-
T Consensus 238 NEiAQs---ea~~g~~~~a~yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~ 298 (464)
T COG0215 238 NEIAQS---EAATGVKPFAKYWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSS 298 (464)
T ss_pred cHHHHH---HhhhCCCcceeEeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHH
Confidence 444443 333 3222 2 355667899999999999864 3489998888 9999999887764
Q ss_pred CccCCCccccHHHHHH
Q 012516 221 GISRSDSLIRLDRLEY 236 (462)
Q Consensus 221 G~s~~~~~~~~~~l~~ 236 (462)
.. +++-.|+.+.|+.
T Consensus 299 HY-R~pl~fsee~L~~ 313 (464)
T COG0215 299 HY-RSPLDFSEELLEE 313 (464)
T ss_pred Hh-CCccccCHHHHHH
Confidence 43 2334455555543
No 42
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=97.43 E-value=0.00047 Score=74.87 Aligned_cols=87 Identities=13% Similarity=0.055 Sum_probs=68.5
Q ss_pred CCccceEeecccccc-ccHHHHHHHH-HhCCCCCeEEEEeeecCC-CcccccccccccccccccCCCCCchhhhHHHHHH
Q 012516 129 IENITHSLCTLEFET-RRASYFWLLH-ALGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 205 (462)
Q Consensus 129 l~gITHviRg~e~l~-~t~~q~~l~~-aLg~~~P~~~h~~~l~~~-g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~ 205 (462)
..|||..+.|.||.. +...+..+.+ .||+++|...+++.+... |.|||||++... ++..+.+
T Consensus 232 ~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~i---------------~~~d~l~ 296 (510)
T PRK00750 232 ALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNVI---------------TIEDWLE 296 (510)
T ss_pred HcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCcc---------------CHHHHHH
Confidence 579999999999999 9999999999 999999999999987776 999999997432 3444444
Q ss_pred cCCCHHHHHHHHHHcCccCCCccccH
Q 012516 206 RGVTSTSINAFVQGIGISRSDSLIRL 231 (462)
Q Consensus 206 rG~~peAi~~f~~~lG~s~~~~~~~~ 231 (462)
. +.|++++=|+..-.-...+..|++
T Consensus 297 ~-~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 297 Y-APPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred H-CCHHHHHHHHHhCCCCCCCCcccH
Confidence 4 889999878765443334445555
No 43
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=97.43 E-value=0.00016 Score=72.95 Aligned_cols=198 Identities=16% Similarity=0.208 Sum_probs=98.2
Q ss_pred CCccc-CCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceE
Q 012516 1 MGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 79 (462)
Q Consensus 1 LGl~w-D~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~ 79 (462)
||+.+ +..-+.|++++...+++++|+++|.||.-.-..==+.-.+.+.|..- ..+..+ +|..|.-.
T Consensus 89 Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~L-s~~~~~-------~l~~~~~~----- 155 (300)
T PF01406_consen 89 LNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKL-SNQDLE-------DLEAGARV----- 155 (300)
T ss_dssp TT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTT-TT-SHH-------HHHHCHHH-----
T ss_pred cCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccc-cccchh-------hHHhhhhc-----
Confidence 56655 46778999999999999999999999986510000000000112111 112222 23333211
Q ss_pred EEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccceeeee--ecCCC-ccceEeeccccc----cccHHHHHH
Q 012516 80 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI--VDSIE-NITHSLCTLEFE----TRRASYFWL 151 (462)
Q Consensus 80 lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~~V--DD~l~-gITHviRg~e~l----~~t~~q~~l 151 (462)
+.......-+||+||+....-.+.-...| .|.|..|.-|++ ..++- .++=---|.|++ .|--.|
T Consensus 156 -----~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAq--- 227 (300)
T PF01406_consen 156 -----EVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQ--- 227 (300)
T ss_dssp -----TT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHH---
T ss_pred -----ccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHH---
Confidence 11112234489999998643223333444 367887776643 12111 233334455544 344444
Q ss_pred HHHh-CCCCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccc
Q 012516 152 LHAL-GLYQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLI 229 (462)
Q Consensus 152 ~~aL-g~~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~ 229 (462)
.+|+ |-+.. ...|-++|+++|.||||+.+. +.||+.+..+ |+|++|+-||..-... ++-.|
T Consensus 228 s~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~hYr-~~l~~ 290 (300)
T PF01406_consen 228 SEAATGKPFANYWMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLSTHYR-KPLNF 290 (300)
T ss_dssp HHHHHSS-SEEEEEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS-TT-S-EEE
T ss_pred HHHhhCchHHHHHHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcCCCC-Ccccc
Confidence 3344 42222 355667899999999999864 3478898865 9999999887654333 34466
Q ss_pred cHHHHHH
Q 012516 230 RLDRLEY 236 (462)
Q Consensus 230 ~~~~l~~ 236 (462)
+.+.|+.
T Consensus 291 s~~~l~~ 297 (300)
T PF01406_consen 291 SEENLEE 297 (300)
T ss_dssp -HHHHHH
T ss_pred CHHHHHH
Confidence 7777654
No 44
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=96.84 E-value=0.0063 Score=68.03 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=108.1
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEe-----CCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCccc
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 74 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c-----~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~ 74 (462)
||+.++ -+.+.|++.+...++.++|+++|.||.- |+...=-.. .. .|-.++++... ....|..|.
T Consensus 143 Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~--~~----~Yg~L~p~~~~-~~~~~~~g~-- 213 (651)
T PTZ00399 143 LNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKA--GH----VYPKLEPESVA-DEDRIAEGE-- 213 (651)
T ss_pred cCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccc--hh----hHHhhChhhcC-CHHHHhccc--
Confidence 677665 5667799999999999999999999953 221110000 00 11112221110 011233342
Q ss_pred CCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccceee----------eeecCCCccceEeecccccc
Q 012516 75 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH----------CIVDSIENITHSLCTLEFET 143 (462)
Q Consensus 75 ~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~----------~VDD~l~gITHviRg~e~l~ 143 (462)
+. +. +....-.+-.||++|++...-.|.-...| .+-|..|--| .+|=|--||.++.= |..
T Consensus 214 -~~--l~---~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FP---HHe 284 (651)
T PTZ00399 214 -GA--LG---KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFP---HHD 284 (651)
T ss_pred -CC--cc---ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCC---cch
Confidence 10 00 00111122379999987643334333333 2456666533 23434444443321 223
Q ss_pred ccHHHHHHHHHhCC-CCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcC
Q 012516 144 RRASYFWLLHALGL-YQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 221 (462)
Q Consensus 144 ~t~~q~~l~~aLg~-~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG 221 (462)
|--.|---+ .|- +-+ .+.|.++|++.|.|||||.+.. .|++.+.+. |.|++|+=|++.-
T Consensus 285 NEiAQseA~--~~~~~~v~y~~H~G~L~i~G~KMSKSLGNf---------------Itp~dlLek-ygaDaLR~~lLs~- 345 (651)
T PTZ00399 285 NELAQSEAY--FDKHQWVNYFLHSGHLHIKGLKMSKSLKNF---------------ITIRQALSK-YTARQIRLLFLLH- 345 (651)
T ss_pred hHHHHHHHh--hCCCCCCcEEEEEEEEEeccchhhhcCCCc---------------ccHHHHHHH-cChHHHHHHHHhc-
Confidence 333333211 221 113 4566689999999999998643 367777766 9999999988754
Q ss_pred ccCCCccccHHHHHHHH
Q 012516 222 ISRSDSLIRLDRLEYHI 238 (462)
Q Consensus 222 ~s~~~~~~~~~~l~~~n 238 (462)
--.++..|+++.|....
T Consensus 346 ~~~~dldFS~e~l~~a~ 362 (651)
T PTZ00399 346 KWDKPMNYSDESMDEAI 362 (651)
T ss_pred CCCCCCccCHHHHHHHH
Confidence 33345678888765543
No 45
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=95.57 E-value=0.055 Score=56.23 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=66.2
Q ss_pred CCccceEeeccccccc---cHHHHHHHH-HhCCCCCeEEEEeeecCCCc-ccccccccccccccccCCCCCchhhhHHHH
Q 012516 129 IENITHSLCTLEFETR---RASYFWLLH-ALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTNKYVDGWDDPCLMTLAGL 203 (462)
Q Consensus 129 l~gITHviRg~e~l~~---t~~q~~l~~-aLg~~~P~~~h~~~l~~~g~-kLSKR~~~~~v~~~~~~gwddPr~~ti~~l 203 (462)
..||+-=+=|.||..+ -..-..+.+ .||.++|....|..+.+.+. |||||++... ++..+
T Consensus 225 ~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGnvI---------------~~~dl 289 (353)
T cd00674 225 ILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGNVI---------------TPSDW 289 (353)
T ss_pred hcCCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCCcC---------------CHHHH
Confidence 4678888889999988 888888888 99999997766666666665 9999997432 56666
Q ss_pred HHcCCCHHHHHHHHHHcCccCCCccccHH
Q 012516 204 RRRGVTSTSINAFVQGIGISRSDSLIRLD 232 (462)
Q Consensus 204 r~rG~~peAi~~f~~~lG~s~~~~~~~~~ 232 (462)
.+. +.|+||+=|+....-...+..||++
T Consensus 290 l~~-~~~dalR~~~l~~~~~~~~i~Fd~~ 317 (353)
T cd00674 290 LEV-APPEVLRYLYARRKNPEKHIGFDLD 317 (353)
T ss_pred HHH-hChHHHHHHHHhCCCCCCCCCcChh
Confidence 666 7899999888776633344566664
No 46
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=95.54 E-value=0.02 Score=63.04 Aligned_cols=147 Identities=14% Similarity=0.122 Sum_probs=81.5
Q ss_pred CCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEe--eccccccccHHHHHHHHHhCCCCC-eEEEEeeecC
Q 012516 94 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSL--CTLEFETRRASYFWLLHALGLYQP-YVWEYSRLNV 170 (462)
Q Consensus 94 ~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHvi--Rg~e~l~~t~~q~~l~~aLg~~~P-~~~h~~~l~~ 170 (462)
.|.|+.|+++++ .|.|=|.|...+=...+.+++| =|.||...-++=..+.++||++.| ...|++.--.
T Consensus 298 ~~~vl~ksDGt~---------~Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V 368 (566)
T TIGR00456 298 KDRVLQKSDGTY---------LYLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMV 368 (566)
T ss_pred CCeEEEECCCCc---------eechhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEE
Confidence 368999987543 2333344433332222555544 688998888888999999999777 5777776334
Q ss_pred CCcccccccccccccccccCCCCCchhhhHHHHHHcC----------CCHHHHHHHHHHcCccCCCccccHHHHHHHHH-
Q 012516 171 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG----------VTSTSINAFVQGIGISRSDSLIRLDRLEYHIR- 239 (462)
Q Consensus 171 ~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG----------~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr- 239 (462)
.+.+||||++...--.+++.- =--|+. ..+..++ +-..|++=|+.+.+ ..++..|||+++..+|.
T Consensus 369 ~~~kmSkr~Gn~V~~~dll~~-~~~ra~--~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~~~n 444 (566)
T TIGR00456 369 PLGSMKTRRGNVISLDNLLDE-ASKRAG--NVITIKNDLEEEDVADAVGIGAVRYFDLSQN-RETHYVFDWDAMLSFEGN 444 (566)
T ss_pred ECCCCCccCCceeeHHHHHHH-HHHHHH--HHHHhcCCccHHHHHHHhcccceeeHHhhcC-CCCCceecHHHHhccCCC
Confidence 567999999743210000000 000000 0111111 11244444555544 45677899998766643
Q ss_pred --HhhhccCCcceeee
Q 012516 240 --EELNKTAPRTMVVL 253 (462)
Q Consensus 240 --~~l~~~~~r~~~v~ 253 (462)
-+|.....|...++
T Consensus 445 ~~~yiqYa~aR~~SIl 460 (566)
T TIGR00456 445 TAPYIQYAHARICSIL 460 (566)
T ss_pred CchhHHHHHHHHHHHH
Confidence 35666666655544
No 47
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=95.44 E-value=0.031 Score=61.61 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=52.4
Q ss_pred CCcEEEEEecCCCCCCCCccccccccceeeeeecCCC-ccceEe--eccccccccHHHHHHHHHhCCCCC-eEEEEe--e
Q 012516 94 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE-NITHSL--CTLEFETRRASYFWLLHALGLYQP-YVWEYS--R 167 (462)
Q Consensus 94 ~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~-gITHvi--Rg~e~l~~t~~q~~l~~aLg~~~P-~~~h~~--~ 167 (462)
.|.|+.|+++++ .|.|=|+|...+=+.. +.+++| =|.||...-++=..+.++||+..+ ...|+. .
T Consensus 294 ~~~vl~ksDGt~---------~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~ 364 (562)
T PRK12451 294 PPCLIRKSDGAT---------IYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGL 364 (562)
T ss_pred CceEEEeCCCcc---------ccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeee
Confidence 478999988543 2444444443333322 344443 477888887888889999998644 355554 5
Q ss_pred ecCCCcccccccccc
Q 012516 168 LNVSNTVMSKRKLNF 182 (462)
Q Consensus 168 l~~~g~kLSKR~~~~ 182 (462)
+++.|++||+|++..
T Consensus 365 V~~~g~kmStR~G~~ 379 (562)
T PRK12451 365 ILKDGKKMSTRKGRV 379 (562)
T ss_pred EecCCCCCcCCCCCe
Confidence 778899999999743
No 48
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=95.05 E-value=0.4 Score=48.68 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=47.7
Q ss_pred eEeeccccc-cccHHHHHHHHHhCCC-CC-eEEEEeeecCCC-cccccccccccccccccCCCCCchhhhHHHHHHcCCC
Q 012516 134 HSLCTLEFE-TRRASYFWLLHALGLY-QP-YVWEYSRLNVSN-TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVT 209 (462)
Q Consensus 134 HviRg~e~l-~~t~~q~~l~~aLg~~-~P-~~~h~~~l~~~g-~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~ 209 (462)
--+=|.|++ ...........+++.. +| .++-++.+..+| .|||||.+... ++..+.+. +.
T Consensus 229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v---------------~~~d~~~~-~~ 292 (312)
T cd00668 229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVI---------------DPSDVVEK-YG 292 (312)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcC---------------CHHHHHHH-cC
Confidence 344567776 4555555666667654 44 233335577776 99999997432 45566655 88
Q ss_pred HHHHHHHHHHcCc
Q 012516 210 STSINAFVQGIGI 222 (462)
Q Consensus 210 peAi~~f~~~lG~ 222 (462)
++|++=|++..+-
T Consensus 293 ~da~R~~l~~~~~ 305 (312)
T cd00668 293 ADALRYYLTSLAP 305 (312)
T ss_pred cHHHHHHHHhcCC
Confidence 9999999887653
No 49
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=94.67 E-value=0.14 Score=55.79 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=58.3
Q ss_pred CccceEeecccccccc---HHHHHHH-HHhCCCCCe--EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHH
Q 012516 130 ENITHSLCTLEFETRR---ASYFWLL-HALGLYQPY--VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGL 203 (462)
Q Consensus 130 ~gITHviRg~e~l~~t---~~q~~l~-~aLg~~~P~--~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~l 203 (462)
.|||-=-=|.||..+. .....+. ++||..+|. .+++-+|...|.|||||++.. .|++.+
T Consensus 224 lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn~---------------itl~dl 288 (515)
T TIGR00467 224 EKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGDV---------------ISVKDV 288 (515)
T ss_pred hCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCCC---------------ccHHHH
Confidence 4555556688888744 3444454 599988885 444445666788999999753 367777
Q ss_pred HHcCCCHHHHHHHHHHcCccCCCccccHHHH
Q 012516 204 RRRGVTSTSINAFVQGIGISRSDSLIRLDRL 234 (462)
Q Consensus 204 r~rG~~peAi~~f~~~lG~s~~~~~~~~~~l 234 (462)
.+. +.|++++=|+.. .-..++..||++.|
T Consensus 289 l~~-~~pdalR~~~l~-~~~~~~ldFd~~~l 317 (515)
T TIGR00467 289 LEV-YTPEITRFLFAR-TKPEFHISFDLDVI 317 (515)
T ss_pred HHH-cCHHHHHHHHhc-cCCCCCCcCCHHHH
Confidence 776 889998776432 23344456777666
No 50
>PLN02286 arginine-tRNA ligase
Probab=94.48 E-value=0.2 Score=55.43 Aligned_cols=80 Identities=13% Similarity=-0.021 Sum_probs=51.3
Q ss_pred CCcEEEEEecCCCCCCCCccccccccceeeeeecCCC-ccceEe--eccccccccHHHHHHHHHhCCCCC----eEEEEe
Q 012516 94 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE-NITHSL--CTLEFETRRASYFWLLHALGLYQP----YVWEYS 166 (462)
Q Consensus 94 ~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~-gITHvi--Rg~e~l~~t~~q~~l~~aLg~~~P----~~~h~~ 166 (462)
.|.|+.|++++. .|.|=|+|....=+.. +.+++| =|.||...-.+=..+.++||+..+ ...|++
T Consensus 297 ~~~vl~ksDGt~---------tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~ 367 (576)
T PLN02286 297 IPLIVVKSDGGF---------NYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVG 367 (576)
T ss_pred CceEEEECCCch---------hhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEe
Confidence 467888987533 3444455554444433 233332 277887777777888999998533 455655
Q ss_pred --eec-CCCcccccccccc
Q 012516 167 --RLN-VSNTVMSKRKLNF 182 (462)
Q Consensus 167 --~l~-~~g~kLSKR~~~~ 182 (462)
.+. ..|++||||.+..
T Consensus 368 ~g~V~~~~g~kmStR~G~~ 386 (576)
T PLN02286 368 FGLVLGEDGKRFRTRSGEV 386 (576)
T ss_pred eccEECCCCCcccCCCCCe
Confidence 343 6788999999743
No 51
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=93.94 E-value=0.1 Score=54.99 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=65.1
Q ss_pred ecCCCccceEeecccccc-ccHHHHHHHHHhCCCCCeEEEEe-eecCCCcccccccccccccccccCCCCCchhhhHHHH
Q 012516 126 VDSIENITHSLCTLEFET-RRASYFWLLHALGLYQPYVWEYS-RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGL 203 (462)
Q Consensus 126 DD~l~gITHviRg~e~l~-~t~~q~~l~~aLg~~~P~~~h~~-~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~l 203 (462)
+|....+.|+| |.|-+- .+...-.++-|+|++.|...... ++.++|.||||+.+... ....+
T Consensus 278 ~~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~lP~~i~~~~~~~~~g~K~SkS~gn~i---------------~~~~~ 341 (391)
T PF09334_consen 278 NDSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLPLPRRIVVHGFLTLDGEKMSKSRGNVI---------------WPDDL 341 (391)
T ss_dssp ST--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---SEEEEE--EEETTCCEETTTTESS---------------BHHHH
T ss_pred ccCCceEEEEE-ccchhHHHHHHhHHHHhcccCCCCCEEEeeeeEEECCeeccccCCccc---------------CHHHH
Confidence 45556677876 677643 44455566777899988744322 58899999999986432 23455
Q ss_pred HHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHHhh
Q 012516 204 RRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 242 (462)
Q Consensus 204 r~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~~l 242 (462)
.++ +.+++++=||+..|.-..++.|+++.+...+...|
T Consensus 342 ~~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L 379 (391)
T PF09334_consen 342 LEE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNNEL 379 (391)
T ss_dssp HHH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCC
T ss_pred HHh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 555 88999999999999999999999999866555444
No 52
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=92.97 E-value=0.3 Score=53.32 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=60.5
Q ss_pred eecccccc-ccHHHHHHHHHhCCCCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHH
Q 012516 136 LCTLEFET-RRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSI 213 (462)
Q Consensus 136 iRg~e~l~-~t~~q~~l~~aLg~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi 213 (462)
+-|.|-+- .+-.+-.++.++|+++|. +..++++..+|.|||||.+... ++..+.++ |.++|+
T Consensus 287 ~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~~~g~KmSKS~Gn~i---------------~~~d~i~~-~g~D~l 350 (530)
T TIGR00398 287 FIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVV---------------DPSDLLAR-FGADIL 350 (530)
T ss_pred EEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEEECCceecccCCcee---------------cHHHHHHH-cCchHH
Confidence 34666543 222334567788987774 4455567788999999987432 33444444 778999
Q ss_pred HHHHHHcCccCCCccccHHHHHHH-HHH
Q 012516 214 NAFVQGIGISRSDSLIRLDRLEYH-IRE 240 (462)
Q Consensus 214 ~~f~~~lG~s~~~~~~~~~~l~~~-nr~ 240 (462)
|=|++..+-...+..|+++.+... |..
T Consensus 351 R~~l~~~~~~~~d~~f~~~~l~~~~n~~ 378 (530)
T TIGR00398 351 RYYLLKERPLGKDGDFSWEDFVERVNAD 378 (530)
T ss_pred HHHHhhCCCCCCCCCCCHHHHHHHHHHH
Confidence 999998886677788999988554 344
No 53
>PLN02610 probable methionyl-tRNA synthetase
Probab=92.23 E-value=0.36 Score=55.49 Aligned_cols=94 Identities=14% Similarity=-0.025 Sum_probs=61.4
Q ss_pred ceEeecccccc-ccHHHHHHHHHhC--CCCCeEEE-EeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCC
Q 012516 133 THSLCTLEFET-RRASYFWLLHALG--LYQPYVWE-YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGV 208 (462)
Q Consensus 133 THviRg~e~l~-~t~~q~~l~~aLg--~~~P~~~h-~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~ 208 (462)
.|+| |.|-+- ++-..=.++-++| |+.|.... .+.|+.+|.||||+.+... ....+.+++|
T Consensus 304 ~hfi-GKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV---------------~p~~~i~~~y 367 (801)
T PLN02610 304 YQFM-GKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGV---------------FGNDAKDTNI 367 (801)
T ss_pred EEEE-eeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCEecCCceecCcCCccc---------------CHHHHHhccC
Confidence 4555 444322 3333344556667 44665332 2358999999999986421 2345667789
Q ss_pred CHHHHHHHHHHcCccCCCccccHHHHHH-HHHHhh
Q 012516 209 TSTSINAFVQGIGISRSDSLIRLDRLEY-HIREEL 242 (462)
Q Consensus 209 ~peAi~~f~~~lG~s~~~~~~~~~~l~~-~nr~~l 242 (462)
.++++|=||+.-+--.++..|+|+.|.. +|.+.+
T Consensus 368 g~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~ 402 (801)
T PLN02610 368 PVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELL 402 (801)
T ss_pred CchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999888777888999977633 344333
No 54
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=91.87 E-value=0.6 Score=51.27 Aligned_cols=87 Identities=11% Similarity=0.013 Sum_probs=57.3
Q ss_pred ceEeeccccccc-cHHHHHHHHHhC--CCCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCC
Q 012516 133 THSLCTLEFETR-RASYFWLLHALG--LYQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGV 208 (462)
Q Consensus 133 THviRg~e~l~~-t~~q~~l~~aLg--~~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~ 208 (462)
.|++ |.|.+.. +...-.++.+.| +..| .+..++++..+|.|||||.+... +...+.++ |
T Consensus 290 ~~~~-G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~~~G~KMSKS~GN~I---------------~p~dli~~-y 352 (556)
T PRK12268 290 YYFI-GKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGI---------------WVDDALER-Y 352 (556)
T ss_pred EEEE-eeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEEECCeeeccCCCccc---------------CHHHHHHH-c
Confidence 4444 6666542 222334555566 5556 44455567778999999997542 23344333 7
Q ss_pred CHHHHHHHHHHcCccCCCccccHHHHHH
Q 012516 209 TSTSINAFVQGIGISRSDSLIRLDRLEY 236 (462)
Q Consensus 209 ~peAi~~f~~~lG~s~~~~~~~~~~l~~ 236 (462)
.++|++=|++..+-...+..|+++.+..
T Consensus 353 GaDalR~~ll~~~~~~~d~~f~~~~~~~ 380 (556)
T PRK12268 353 PPDYLRYYLAANAPENSDTDFTWEEFVR 380 (556)
T ss_pred CcHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 7899999999888777788899988643
No 55
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=91.68 E-value=0.25 Score=49.71 Aligned_cols=50 Identities=10% Similarity=0.004 Sum_probs=42.4
Q ss_pred ccceEeeccccccccHHHHHHHHHhC------CCCCeEEEE--eee-cCCC--cccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY--SRL-NVSN--TVMSKRKL 180 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aLg------~~~P~~~h~--~~l-~~~g--~kLSKR~~ 180 (462)
+.++|..|.|-..+-..-+-|.+.|| +..|...+- +++ .++| +||||+..
T Consensus 137 ~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~ 197 (280)
T cd00806 137 KACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDP 197 (280)
T ss_pred cCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCC
Confidence 44999999999999999999999999 788988776 664 5665 59999986
No 56
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.60 E-value=1.2 Score=48.08 Aligned_cols=182 Identities=13% Similarity=0.130 Sum_probs=104.4
Q ss_pred ccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEEEEe
Q 012516 4 EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 83 (462)
Q Consensus 4 ~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~lR~K 83 (462)
.|+-..+=|++.+..-.+++++|+.|.||+-.-|-= +. -...+..|-.+. ... +.+..| ||..+.
T Consensus 146 pPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVY-Fd---v~kf~~~YgKL~--G~~---~~~~~g---Eg~l~d--- 210 (586)
T KOG2007|consen 146 PPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVY-FD---VDKFPHSYGKLV--GQR---KNLQEG---EGVLSD--- 210 (586)
T ss_pred CCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEE-Ee---cccccchhhhhc--Cch---hhcccC---cCcccc---
Confidence 345567889999999999999999999997631100 00 011221111111 110 223333 244331
Q ss_pred ecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccceeeee----------ecCCCccceEeeccccccccHHHHHHH
Q 012516 84 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI----------VDSIENITHSLCTLEFETRRASYFWLL 152 (462)
Q Consensus 84 ~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~~V----------DD~l~gITHviRg~e~l~~t~~q~~l~ 152 (462)
+....-.||.+|+....--|.....| .|=|-.|--|.+ |=|-=||.-.+ =|..|--.|..-+
T Consensus 211 ----s~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~F---PHHeNEiAQ~eA~ 283 (586)
T KOG2007|consen 211 ----SRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAF---PHHENEIAQSEAA 283 (586)
T ss_pred ----ccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcccccC---CCcccHHHHHHHH
Confidence 11222368888887654445544555 356666665543 33444443332 2445555554333
Q ss_pred HHhC-CCCCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccC
Q 012516 153 HALG-LYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 224 (462)
Q Consensus 153 ~aLg-~~~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~ 224 (462)
-.-. | .=.+.|-+||.+.|.||||+-.. +-||+...+ -|+|.+++-|+.+--|..
T Consensus 284 ~~~~~w-VnYflHtGhL~i~g~KMSKSLkN---------------FiTIke~Lk-~~sp~qLRl~fl~~~wr~ 339 (586)
T KOG2007|consen 284 FDDSQW-VNYFLHTGHLTINGEKMSKSLKN---------------FITIKEALK-KYSPRQLRLAFLLHQWRS 339 (586)
T ss_pred hcCCcc-ceeEEEcCeeeeccchhhhhhcc---------------ceeHHHHHH-hcCHHHHHHHHHHHHhcC
Confidence 2222 2 23577888999999999999642 347876554 499999999888777643
No 57
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=91.12 E-value=0.69 Score=51.89 Aligned_cols=90 Identities=21% Similarity=0.097 Sum_probs=59.0
Q ss_pred Eeeccccccc-cHHHHHHHHHhCCCCCeEEE-EeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHH
Q 012516 135 SLCTLEFETR-RASYFWLLHALGLYQPYVWE-YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTS 212 (462)
Q Consensus 135 viRg~e~l~~-t~~q~~l~~aLg~~~P~~~h-~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peA 212 (462)
-+=|.|.+.. +-..-.++.++|+++|.... .+++..+|.||||+.+... +| ..+.++ |.+++
T Consensus 258 ~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~~eg~KMSKS~GN~i----------~p-----~d~l~~-ygaD~ 321 (648)
T PRK12267 258 HLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGNVV----------DP-----EELVDR-YGLDA 321 (648)
T ss_pred EEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEEECCceecccCCccc----------CH-----HHHHHH-cCCcH
Confidence 3446666542 22333556678888886443 3468889999999986432 22 233332 88999
Q ss_pred HHHHHHHcCccCCCccccHHHHH-HHHHH
Q 012516 213 INAFVQGIGISRSDSLIRLDRLE-YHIRE 240 (462)
Q Consensus 213 i~~f~~~lG~s~~~~~~~~~~l~-~~nr~ 240 (462)
+|=||+.-+--..+..|+++.+. .+|++
T Consensus 322 lR~~L~~~~~~~~D~~fs~~~~~~~~n~~ 350 (648)
T PRK12267 322 LRYYLLREVPFGSDGDFSPEALVERINSD 350 (648)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 99999887766677888988863 34443
No 58
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=90.99 E-value=0.62 Score=52.54 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=52.9
Q ss_pred HHHHHhCCCCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccC-CCc
Q 012516 150 WLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR-SDS 227 (462)
Q Consensus 150 ~l~~aLg~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~-~~~ 227 (462)
.++-++|+..|. +.-++++..+|.|||||.+... +...+.++ |.++|+|=|++..+... .+.
T Consensus 304 a~l~a~g~~lP~~v~~hg~v~~~G~KMSKS~GNvV---------------~p~dlie~-ygaDalR~~ll~~~~~~~~D~ 367 (673)
T PRK00133 304 AMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFI---------------WARTYLDH-LDPDYLRYYLAAKLPETIDDL 367 (673)
T ss_pred HHHHhCCCCCCCEEeeeccEEecCCcccccCCccc---------------CHHHHHHH-cCchHHHHHHHhcCCCCCCCC
Confidence 466678998885 3333467779999999997432 23444444 77899999998888766 788
Q ss_pred cccHHHHH-HHHHH
Q 012516 228 LIRLDRLE-YHIRE 240 (462)
Q Consensus 228 ~~~~~~l~-~~nr~ 240 (462)
.|+++.+. ..|..
T Consensus 368 ~Fs~~~~~~~~n~~ 381 (673)
T PRK00133 368 DFNWEDFQQRVNSE 381 (673)
T ss_pred CCCHHHHHHHHHHH
Confidence 99998763 34443
No 59
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=90.89 E-value=0.78 Score=53.75 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=58.1
Q ss_pred cceEeeccccccccHHHHHHHHHhCCC---CC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcC
Q 012516 132 ITHSLCTLEFETRRASYFWLLHALGLY---QP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 207 (462)
Q Consensus 132 ITHviRg~e~l~~t~~q~~l~~aLg~~---~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG 207 (462)
.+--+=|.|++.+-.-+..+..+..++ -| .+.|.+++..+|.||||+.+... || ..+.++
T Consensus 574 ~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI----------~p-----~d~i~~- 637 (938)
T TIGR00395 574 LDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVL----------TL-----EQAVEK- 637 (938)
T ss_pred ceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCC----------CH-----HHHHHH-
Confidence 344556777765433333333343433 35 67778888789999999997543 22 333332
Q ss_pred CCHHHHHHHHHHcCccCCCccccHHHHHHH
Q 012516 208 VTSTSINAFVQGIGISRSDSLIRLDRLEYH 237 (462)
Q Consensus 208 ~~peAi~~f~~~lG~s~~~~~~~~~~l~~~ 237 (462)
|.++|+|=||+..|-..++..|+.+.+...
T Consensus 638 yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~ 667 (938)
T TIGR00395 638 FGADVARLYIADAAETVQDADWKESEVEGT 667 (938)
T ss_pred cChHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 889999999988876667777777776544
No 60
>PLN02224 methionine-tRNA ligase
Probab=90.03 E-value=1 Score=50.31 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=61.2
Q ss_pred cccccc-ccHHHHHHHHHhCCCCCeE-EEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHH
Q 012516 138 TLEFET-RRASYFWLLHALGLYQPYV-WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 215 (462)
Q Consensus 138 g~e~l~-~t~~q~~l~~aLg~~~P~~-~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~ 215 (462)
|.|.+. ++-..-.++-++|++.|.. ...++|..+|.||||+.+... +...+.++ |.+++++=
T Consensus 328 GKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l~~eG~KMSKS~GN~i---------------~p~e~l~~-ygaD~~R~ 391 (616)
T PLN02224 328 GKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTL---------------EPFELVQK-FGPDAVRY 391 (616)
T ss_pred eecccccHHHHHHHHHHHCCCCCCcEEEecccEecCCccccccCCccC---------------CHHHHHHH-cCcHHHHH
Confidence 666554 2334444555678888853 333468899999999986432 23344444 89999999
Q ss_pred HHHHcCccCCCccccHHHH-HHHHHHhhhc
Q 012516 216 FVQGIGISRSDSLIRLDRL-EYHIREELNK 244 (462)
Q Consensus 216 f~~~lG~s~~~~~~~~~~l-~~~nr~~l~~ 244 (462)
||+..+.-.++..|+++.+ ...|.+.++.
T Consensus 392 yLl~~~p~~~d~~fs~~~~~~~~NseLan~ 421 (616)
T PLN02224 392 FFLREVEFGNDGDYSEDRFIKIVNAHLANT 421 (616)
T ss_pred HHHhcCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 9998876667778998875 4556655554
No 61
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.18 E-value=0.36 Score=49.20 Aligned_cols=78 Identities=15% Similarity=0.058 Sum_probs=48.9
Q ss_pred eecccccccc----HHHHHHHHHhCC---CCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcC
Q 012516 136 LCTLEFETRR----ASYFWLLHALGL---YQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 207 (462)
Q Consensus 136 iRg~e~l~~t----~~q~~l~~aLg~---~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG 207 (462)
+=|.|++..- ..+......+|+ ..| .+.+++.+.++|.|||||.+... ++..+.+.
T Consensus 229 v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v---------------~~~dll~~- 292 (314)
T cd00812 229 IGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVV---------------TPDEAIKK- 292 (314)
T ss_pred ecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCC---------------CHHHHHHH-
Confidence 3477775433 233334444464 445 34566778899999999997432 35555554
Q ss_pred CCHHHHHHHHHHcCccCCCccccH
Q 012516 208 VTSTSINAFVQGIGISRSDSLIRL 231 (462)
Q Consensus 208 ~~peAi~~f~~~lG~s~~~~~~~~ 231 (462)
+.+.|++=|++..+. .+..|+|
T Consensus 293 ~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 293 YGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred hCcHHHHHHHHhcCC--cCCCCCC
Confidence 678999988887655 5555553
No 62
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.22 E-value=0.45 Score=49.83 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=41.0
Q ss_pred ccceEeeccccccccHHHHHHHHHh----CCCCCeEEEEeee-cCCCcccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHAL----GLYQPYVWEYSRL-NVSNTVMSKRKL 180 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aL----g~~~P~~~h~~~l-~~~g~kLSKR~~ 180 (462)
.-++|..|.|-...-..-+-+.+.| |+..|...|-+.+ .++|+||||++.
T Consensus 203 ~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~ 257 (368)
T PRK12285 203 KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKP 257 (368)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCC
Confidence 5678999999888777777788888 9999987776655 688999999974
No 63
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=87.38 E-value=0.23 Score=50.80 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=35.1
Q ss_pred hHHHHHHcCCCHHHHHHHHHHcCccCCCc--cccHHHHHHHHHHh-hhccCCcceeeecceEE
Q 012516 199 TLAGLRRRGVTSTSINAFVQGIGISRSDS--LIRLDRLEYHIREE-LNKTAPRTMVVLNPLKV 258 (462)
Q Consensus 199 ti~~lr~rG~~peAi~~f~~~lG~s~~~~--~~~~~~l~~~nr~~-l~~~~~r~~~v~~p~~~ 258 (462)
.+..+|..|++|+|+.|||+++||+.... .++.+. +.+.. ++... +..+++|+.||
T Consensus 254 ~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~---~~~~f~~~~~~-~~~~~fd~~kL 312 (314)
T PF00749_consen 254 ELGDYREWGDPPEATLNYLARLGWSPEAIREFFSLDE---LIKQFDLSKIS-KSPAVFDRKKL 312 (314)
T ss_dssp HHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHH---HHHHC-GGGBH-SSHEEHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHhcCCcchhhhhcCHHH---HHHHhhHhhcc-CchHHhCHHHh
Confidence 48899999999999999999999996543 334333 33332 44432 33355665543
No 64
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=87.36 E-value=0.3 Score=52.70 Aligned_cols=61 Identities=10% Similarity=0.155 Sum_probs=43.7
Q ss_pred hhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHH----HHHHHHHhhhccCCcceeeecceEEEEEe
Q 012516 198 MTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR----LEYHIREELNKTAPRTMVVLNPLKVVITN 262 (462)
Q Consensus 198 ~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~----l~~~nr~~l~~~~~r~~~v~~p~~~~i~n 262 (462)
.++..++..||.|+||.||++++||+..+..++.-. +.+++-..+ ....+.+|..+|.+.|
T Consensus 258 ~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~----~~~~~~fd~~kL~~~n 322 (472)
T COG0008 258 VSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIV----SKSPAAFDRKKLDWLN 322 (472)
T ss_pred cccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhh----hcccccccHHHhHhhh
Confidence 456678999999999999999999998655333333 344444444 3444677888888877
No 65
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=86.41 E-value=1.7 Score=44.42 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=52.0
Q ss_pred cceEeeccccccc-cHHHHHHHHHhCCCCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCC
Q 012516 132 ITHSLCTLEFETR-RASYFWLLHALGLYQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVT 209 (462)
Q Consensus 132 ITHviRg~e~l~~-t~~q~~l~~aLg~~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~ 209 (462)
+.|+ -|.|.+.. +-....+..++|++.| .+.+++.+.++|.||||+.+... ++..+.+. +.
T Consensus 237 ~v~~-~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~~~~g~kmSkS~gn~i---------------~~~~~l~~-~~ 299 (319)
T cd00814 237 LVHF-IGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVV---------------DPDDLLER-YG 299 (319)
T ss_pred eEEE-EeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeEEECCeeecccCCccc---------------CHHHHHHH-cC
Confidence 3444 47777653 2223346677888766 45555678888999999996432 34445444 78
Q ss_pred HHHHHHHHHHcCccCCCc
Q 012516 210 STSINAFVQGIGISRSDS 227 (462)
Q Consensus 210 peAi~~f~~~lG~s~~~~ 227 (462)
|++++=|++..+.-..++
T Consensus 300 ~d~~R~~l~~~~~~~~d~ 317 (319)
T cd00814 300 ADALRYYLLRERPEGKDS 317 (319)
T ss_pred chHHHHHHHhcCCCCCCC
Confidence 999999998877655554
No 66
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=84.29 E-value=3.2 Score=48.51 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=55.1
Q ss_pred cceEeeccccccccHHHHHHHHHhCC---CCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcC
Q 012516 132 ITHSLCTLEFETRRASYFWLLHALGL---YQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 207 (462)
Q Consensus 132 ITHviRg~e~l~~t~~q~~l~~aLg~---~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG 207 (462)
++..+=|.|++.+---+..+..+..+ +.| .+.+.+++..+|.||||+++... ||. ..+.+
T Consensus 531 ~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvV----------dp~----eii~~-- 594 (897)
T PRK12300 531 VDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVI----------PLR----KAIEE-- 594 (897)
T ss_pred ceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCC----------CHH----HHHHH--
Confidence 34556677776542233333344434 234 56666776668999999997543 332 22322
Q ss_pred CCHHHHHHHHHHcCccCCCccccHHHHHHH
Q 012516 208 VTSTSINAFVQGIGISRSDSLIRLDRLEYH 237 (462)
Q Consensus 208 ~~peAi~~f~~~lG~s~~~~~~~~~~l~~~ 237 (462)
|.++|+|=||+..|-...+..|+.+.+...
T Consensus 595 yGaDalRl~L~~~~~~~~D~~fs~~~v~~~ 624 (897)
T PRK12300 595 YGADVVRLYLTSSAELLQDADWREKEVESV 624 (897)
T ss_pred cChHHHHHHHHhCCCCCCCCccCHHHHHHH
Confidence 678899988888776666667776665443
No 67
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=83.52 E-value=3.5 Score=47.55 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=56.4
Q ss_pred ceEeeccccccccHHHHHHHHHhCC--CCC--eEEEEeee-cCCCcccccccccccccccccCCCCCchhhhHHHHHHcC
Q 012516 133 THSLCTLEFETRRASYFWLLHALGL--YQP--YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 207 (462)
Q Consensus 133 THviRg~e~l~~t~~q~~l~~aLg~--~~P--~~~h~~~l-~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG 207 (462)
+-.+-|.|.+. .-.+.+++.++.+ ..| .++..+.+ ..+|.||||+++... ++..+.+.
T Consensus 488 d~~~~G~Di~~-~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i---------------~p~~~i~~- 550 (800)
T PRK13208 488 DLRPQGHDIIR-TWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVV---------------TPEELLEK- 550 (800)
T ss_pred eEEEeecchhh-hHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCC---------------CHHHHHHH-
Confidence 34445555542 2223344334322 234 45555654 578999999997532 23344433
Q ss_pred CCHHHHHHHHHHcCccCCCccccHHHHHHHHHHhhhcc
Q 012516 208 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKT 245 (462)
Q Consensus 208 ~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~~l~~~ 245 (462)
|.++|++=|++ .+-..++..|+.+.+.. +++.+++.
T Consensus 551 yg~D~lR~~l~-~~~~~~d~~fs~~~~~~-~~~~l~kl 586 (800)
T PRK13208 551 YGADAVRYWAA-SARLGSDTPFDEKQVKI-GRRLLTKL 586 (800)
T ss_pred cCccHHHHHHh-cCCCCCCceecHHHHHH-HHHHHHHH
Confidence 77899999888 66666777888887754 55555554
No 68
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.84 E-value=6.4 Score=43.77 Aligned_cols=80 Identities=16% Similarity=0.014 Sum_probs=50.0
Q ss_pred CCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceE--eeccccccccHHHHHHHHHhCCCCCe--EEEEee-e
Q 012516 94 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS--LCTLEFETRRASYFWLLHALGLYQPY--VWEYSR-L 168 (462)
Q Consensus 94 ~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHv--iRg~e~l~~t~~q~~l~~aLg~~~P~--~~h~~~-l 168 (462)
.|.|+.|++++.- |-|=|.|...+=+-.|-+.+ +=|.||...-.+=..++.++|+..+. ..|.+- |
T Consensus 305 ~~~vl~KSDGt~l---------Y~t~DIAy~~~K~~~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l 375 (577)
T COG0018 305 KDRVLQKSDGTYL---------YFTRDIAYHLYKFERGFDKLIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGL 375 (577)
T ss_pred CCeEEEEcCCCee---------eehhHHHHHHHHHhcCCCEEEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEee
Confidence 4778899886443 33434444444333333333 34778876666666677899987774 555552 2
Q ss_pred -c-CCCcccccccccc
Q 012516 169 -N-VSNTVMSKRKLNF 182 (462)
Q Consensus 169 -~-~~g~kLSKR~~~~ 182 (462)
. -+|.|||||.+..
T Consensus 376 ~~~~~g~kmStR~G~~ 391 (577)
T COG0018 376 VRGGEGVKMSTRAGNV 391 (577)
T ss_pred eECCCCccccccCCce
Confidence 3 3688999999754
No 69
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.79 E-value=4.1 Score=45.03 Aligned_cols=104 Identities=19% Similarity=0.133 Sum_probs=67.8
Q ss_pred CccceEeecccccc-ccHHHHHHHHHhCCCCCeEEEE-eeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcC
Q 012516 130 ENITHSLCTLEFET-RRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 207 (462)
Q Consensus 130 ~gITHviRg~e~l~-~t~~q~~l~~aLg~~~P~~~h~-~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG 207 (462)
-.+-|.| |.|-+. ++---=.++.+.|.+.|..+.- +.|.++|.||||+.+..- ....+.++
T Consensus 288 ~e~vhfI-GKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V---------------~~~~~~~~- 350 (558)
T COG0143 288 TELVHFI-GKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVV---------------DPDELLEQ- 350 (558)
T ss_pred ceEEEEe-ccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEEECCccccccCCcEE---------------eHHHHHHH-
Confidence 3455665 555432 3333334556668888875433 358999999999986421 13344445
Q ss_pred CCHHHHHHHHHHcCccCCCccccHHHH-HHHHHHhhhcc---CCcce
Q 012516 208 VTSTSINAFVQGIGISRSDSLIRLDRL-EYHIREELNKT---APRTM 250 (462)
Q Consensus 208 ~~peAi~~f~~~lG~s~~~~~~~~~~l-~~~nr~~l~~~---~~r~~ 250 (462)
+.++++|=|++.-.--.++..|+++.| ...|.+..+.. ++|..
T Consensus 351 ~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~ 397 (558)
T COG0143 351 YGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTL 397 (558)
T ss_pred cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988777788899999887 45566544433 45543
No 70
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=81.54 E-value=0.89 Score=38.45 Aligned_cols=46 Identities=41% Similarity=0.660 Sum_probs=37.1
Q ss_pred eEeeccccccccHHHHHHHHHhCC-CCCeEEEEeeecCCCccccccc
Q 012516 134 HSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRK 179 (462)
Q Consensus 134 HviRg~e~l~~t~~q~~l~~aLg~-~~P~~~h~~~l~~~g~kLSKR~ 179 (462)
|++||.++...-..+.|-.....+ ..|..+.++..++++..||+|+
T Consensus 59 ~~~~G~~~~~~~~~e~~~~~n~~l~~~~e~v~~~~~~~~~~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRWVKDNITLPVDPEQVELPRLNLETTVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHHHHHhcCCCCCCeEEEccccccCceeeccCC
Confidence 999999999998888873333334 4588889998888899999985
No 71
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=80.31 E-value=4.2 Score=40.64 Aligned_cols=84 Identities=15% Similarity=0.072 Sum_probs=61.7
Q ss_pred CCccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCccccccccccc-ccccccCCCCCchhhhHHHHHHc
Q 012516 129 IENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFL-VTNKYVDGWDDPCLMTLAGLRRR 206 (462)
Q Consensus 129 l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~kLSKR~~~~~-v~~~~~~gwddPr~~ti~~lr~r 206 (462)
..+.++++-|.|-..+-..-+-+.+.++...|.-.+.+.| .++|.||||+..... |.- =|+| .+|...-++
T Consensus 149 ~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G~KMSKS~~~~~~i~l-----~dsp--~~i~~Ki~~ 221 (269)
T cd00805 149 YLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGNAIWDPV-----LDSP--YDVYQKIRN 221 (269)
T ss_pred HHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCCCcccCCCCCcccccC-----CCCH--HHHHHHHHc
Confidence 3456999999999999999999999999998887777776 688999999986443 211 1334 366666666
Q ss_pred CCCHHHHHHHHHHc
Q 012516 207 GVTSTSINAFVQGI 220 (462)
Q Consensus 207 G~~peAi~~f~~~l 220 (462)
-+++. +.+|+..+
T Consensus 222 a~~~~-v~~~l~~~ 234 (269)
T cd00805 222 AFDPD-VLEFLKLF 234 (269)
T ss_pred CCcHH-HHHHHHHH
Confidence 77763 45665543
No 72
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=79.28 E-value=1.9 Score=44.89 Aligned_cols=80 Identities=21% Similarity=0.108 Sum_probs=43.8
Q ss_pred CCcEEEEEecCCCCCCCCccccccccceeeeeecC-CCccceE--eeccccccccHHHHHHHHHhCCC--CCeEEEEe--
Q 012516 94 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS-IENITHS--LCTLEFETRRASYFWLLHALGLY--QPYVWEYS-- 166 (462)
Q Consensus 94 ~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~-l~gITHv--iRg~e~l~~t~~q~~l~~aLg~~--~P~~~h~~-- 166 (462)
.|.|+.|+++++ .|.|=|+|...+=. ..+.+-+ |=|.||...-.+=..+.++||+. .....|++
T Consensus 208 k~~Vl~ksDGt~---------~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g 278 (354)
T PF00750_consen 208 KDRVLRKSDGTS---------TYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFG 278 (354)
T ss_dssp S-EEEEETTSEB----------HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-
T ss_pred CcceEEcCCCce---------EEEcchHHHHHHHHhhhccccEEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEE
Confidence 467888877422 23333444444322 2233332 34667766666667788899972 23455654
Q ss_pred e-ecCCCc-ccccccccc
Q 012516 167 R-LNVSNT-VMSKRKLNF 182 (462)
Q Consensus 167 ~-l~~~g~-kLSKR~~~~ 182 (462)
. |..+|+ +||+|++..
T Consensus 279 ~vl~~~gk~~mstR~G~~ 296 (354)
T PF00750_consen 279 VVLLKDGKVKMSTRKGNV 296 (354)
T ss_dssp EEEETTBEESS-TTTTSS
T ss_pred EEEcCCCCccccCCCCCc
Confidence 3 456786 899999753
No 73
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=78.06 E-value=3.8 Score=39.63 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=35.1
Q ss_pred CCCCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcC
Q 012516 156 GLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 221 (462)
Q Consensus 156 g~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG 221 (462)
|-+.+. +.|...+.++|.|||||++.. .++..+.+. +.|+|++=|+..-.
T Consensus 155 g~~~~~~~~h~~~v~~~g~KMSKs~Gn~---------------v~~~dll~~-~~~da~R~~~l~~~ 205 (213)
T cd00672 155 GKPFARYWLHTGHLTIDGEKMSKSLGNF---------------ITVRDALKK-YDPEVLRLALLSSH 205 (213)
T ss_pred CCCCCcEEEEEEEEeccCcchhhcCCCc---------------cCHHHHHHH-cCHHHHHHHHHhCC
Confidence 433343 445567899999999999743 256666663 88999998877544
No 74
>PLN02943 aminoacyl-tRNA ligase
Probab=75.73 E-value=6.2 Score=46.49 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=57.1
Q ss_pred eEeeccccccccHHHHHHHH--HhCCC----CC--eEEEEe-eecCCCcccccccccccccccccCCCCCchhhhHHHHH
Q 012516 134 HSLCTLEFETRRASYFWLLH--ALGLY----QP--YVWEYS-RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 204 (462)
Q Consensus 134 HviRg~e~l~~t~~q~~l~~--aLg~~----~P--~~~h~~-~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr 204 (462)
-.+=|.|.+ -.|++. ++|.. .| .++=++ .++.+|.||||+.+... || ..+.
T Consensus 539 l~~~G~Dii-----~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i----------~p-----~~~i 598 (958)
T PLN02943 539 VLETGHDIL-----FFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVI----------DP-----LDTI 598 (958)
T ss_pred EEEEeehHH-----HHHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCC----------CH-----HHHH
Confidence 334477766 236666 34442 35 233333 35689999999997542 23 2333
Q ss_pred HcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHHhhhccCC
Q 012516 205 RRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAP 247 (462)
Q Consensus 205 ~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~~l~~~~~ 247 (462)
++ |-++|++=||+..+. ..+..|+++.|.. +++.+++.-+
T Consensus 599 ~~-ygaDalR~~l~~~~~-~~d~~fs~~~l~~-~~~~~~kl~N 638 (958)
T PLN02943 599 KE-FGTDALRFTLALGTA-GQDLNLSTERLTS-NKAFTNKLWN 638 (958)
T ss_pred Hh-cCChHHHHHHHhCCC-CCCccccHHHHHH-HHHHHHHHHH
Confidence 32 889999988887543 6777899988876 6766666533
No 75
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=74.32 E-value=15 Score=42.71 Aligned_cols=96 Identities=16% Similarity=0.020 Sum_probs=58.4
Q ss_pred ccceEeeccccccccHHHHHHHHHh---CCCCCe-EEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHH
Q 012516 131 NITHSLCTLEFETRRASYFWLLHAL---GLYQPY-VWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 205 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aL---g~~~P~-~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~ 205 (462)
.+...+=|.|++.. -.|..+.-++ |..+|. +.-++. +..+|.|||||++... ||. ..+.+
T Consensus 564 P~d~~i~G~Di~r~-Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI----------~p~----d~i~~ 628 (861)
T TIGR00392 564 PADFILEGSDQTRG-WFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVV----------DPL----KVINK 628 (861)
T ss_pred CceEEEEecchhcc-HHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCC----------CHH----HHHHH
Confidence 35566677777532 3344444433 545543 222333 4568999999997532 332 12222
Q ss_pred cCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHHhhhc
Q 012516 206 RGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 244 (462)
Q Consensus 206 rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~~l~~ 244 (462)
|.++|+|=|++.. -...+..|+++.+...++...+.
T Consensus 629 --yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~ 664 (861)
T TIGR00392 629 --YGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKI 664 (861)
T ss_pred --cCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHH
Confidence 7799999999877 55567789999887766554444
No 76
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=74.17 E-value=12 Score=43.67 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=57.9
Q ss_pred ceEeeccccccccHHHHHHHHHhCC--CCC--eEEEEeee-cCCCcccccccccccccccccCCCCCchhhhHHHHHHcC
Q 012516 133 THSLCTLEFETRRASYFWLLHALGL--YQP--YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 207 (462)
Q Consensus 133 THviRg~e~l~~t~~q~~l~~aLg~--~~P--~~~h~~~l-~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG 207 (462)
+-.+=|.|.+ ....+.++.-.+.+ ..| .++=++++ ..+|.|||||++... || ..+.++
T Consensus 480 d~~~~G~Dii-~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i----------~p-----~~~i~~- 542 (861)
T TIGR00422 480 DLLVTGYDII-FFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVI----------DP-----LDVIEK- 542 (861)
T ss_pred ceeecchhhh-hHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCC----------CH-----HHHHHH-
Confidence 3345556643 33444445444432 455 33334444 458999999997532 23 233332
Q ss_pred CCHHHHHHHHHHcCccCCCccccHHHHHHHHHHhhhcc
Q 012516 208 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKT 245 (462)
Q Consensus 208 ~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~~l~~~ 245 (462)
|.++|+|=|++..+...++..|+++.+... +..+++.
T Consensus 543 ygaDalR~~l~~~~~~~~d~~f~~~~~~~~-~~~~nkl 579 (861)
T TIGR00422 543 YGADALRFTLASLVTPGDDINFDWKRVESA-RNFLNKL 579 (861)
T ss_pred hChHHHHHHHHhCCCCCCCceecHHHHHHH-HHHHHHH
Confidence 778999999998888778889998887654 3344444
No 77
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=72.67 E-value=6.6 Score=41.06 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=28.9
Q ss_pred CCccceEeecccccc---ccHHHHHHH-HHhCCCCCeEEEEeeecCCC-ccccccccc
Q 012516 129 IENITHSLCTLEFET---RRASYFWLL-HALGLYQPYVWEYSRLNVSN-TVMSKRKLN 181 (462)
Q Consensus 129 l~gITHviRg~e~l~---~t~~q~~l~-~aLg~~~P~~~h~~~l~~~g-~kLSKR~~~ 181 (462)
..|||-=-=|.||.+ |...-..|. +.||+++|...-|-..-+.| .||||+++.
T Consensus 232 ~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~ 289 (360)
T PF01921_consen 232 ALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGN 289 (360)
T ss_dssp HTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES-----------
T ss_pred hcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCC
Confidence 457777788999999 999999999 88999999877776655555 499999974
No 78
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=72.62 E-value=14 Score=43.66 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=56.8
Q ss_pred ccceEeeccccccccHHHHHHHHH---hCCCCC-eEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHH
Q 012516 131 NITHSLCTLEFETRRASYFWLLHA---LGLYQP-YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 205 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~a---Lg~~~P-~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~ 205 (462)
-.+-.+=|.|++-. -.|..+.-. +|-.++ .++-++. +..+|.|||||.+... || ..+.+
T Consensus 545 Pad~~~~G~Di~r~-Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvI----------dP-----~dli~ 608 (975)
T PRK06039 545 PADFIVEGIDQTRG-WFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYV----------DP-----FEVFD 608 (975)
T ss_pred CceEEEechhhHhh-HHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcC----------CH-----HHHHH
Confidence 34455567777532 233333221 233332 2333333 4568999999997542 33 22332
Q ss_pred cCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHHhhhc
Q 012516 206 RGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 244 (462)
Q Consensus 206 rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~~l~~ 244 (462)
+ |-++|+|=|++..+....+..|+++.+....+..+++
T Consensus 609 ~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~k 646 (975)
T PRK06039 609 K-YGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLT 646 (975)
T ss_pred H-hChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHH
Confidence 2 6789999999998877778889998844444444444
No 79
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=69.83 E-value=12 Score=38.64 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=27.6
Q ss_pred CCc--ccCCceec--ccCHHHHHHHHHHHHhCCCeEEeC
Q 012516 1 MGW--EPFKITYT--SDYFQELYELAVELIRRGHAYVDH 35 (462)
Q Consensus 1 LGl--~wD~~~~Q--S~r~~~y~~~a~~Li~~G~AY~c~ 35 (462)
||+ +||..+++ .++.+.-++...+|.++|.+|.-.
T Consensus 100 lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~ 138 (338)
T cd00818 100 LGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGY 138 (338)
T ss_pred hCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccC
Confidence 677 78765544 467888899999999999999543
No 80
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=69.60 E-value=11 Score=39.53 Aligned_cols=72 Identities=10% Similarity=-0.043 Sum_probs=41.9
Q ss_pred eEeeccccccccHHHHHHHHHh--CCCCC--eEEEEeee-cCCCcccccccccccccccccCCCCCchhhhHHHHHHcCC
Q 012516 134 HSLCTLEFETRRASYFWLLHAL--GLYQP--YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGV 208 (462)
Q Consensus 134 HviRg~e~l~~t~~q~~l~~aL--g~~~P--~~~h~~~l-~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~ 208 (462)
-.+-|.|.+ ...-+.++..++ .-..| .+.-++.+ +.+|.|||||++... ++..+.++ +
T Consensus 299 ~~~~G~D~~-~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v---------------~~~dll~~-~ 361 (382)
T cd00817 299 LLVTGHDII-FFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVI---------------DPLDVIDG-Y 361 (382)
T ss_pred eeeeecCcC-chHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCCCC---------------CHHHHHHh-c
Confidence 444566644 333444444443 23345 22333334 479999999997542 34555554 7
Q ss_pred CHHHHHHHHHHcCc
Q 012516 209 TSTSINAFVQGIGI 222 (462)
Q Consensus 209 ~peAi~~f~~~lG~ 222 (462)
.++|++=|++..+-
T Consensus 362 g~Da~R~~ll~~~~ 375 (382)
T cd00817 362 GADALRFTLASAAT 375 (382)
T ss_pred CcHHHHHHHHhCCC
Confidence 78999988876553
No 81
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.55 E-value=4.6 Score=42.87 Aligned_cols=94 Identities=21% Similarity=0.186 Sum_probs=64.2
Q ss_pred cceEeeccccccccHHH-HHHHHHhCCCCCeEE-EEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCC
Q 012516 132 ITHSLCTLEFETRRASY-FWLLHALGLYQPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVT 209 (462)
Q Consensus 132 ITHviRg~e~l~~t~~q-~~l~~aLg~~~P~~~-h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~ 209 (462)
-.||| |.|-+-=-..| =.++=+-|++.|..+ -++|.-..|.||||+-+... ||+ ++ + +-|.
T Consensus 301 t~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvv----------dP~--~l--~--~kyg 363 (578)
T KOG0436|consen 301 TLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVV----------DPF--EL--V--QKYG 363 (578)
T ss_pred eeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhcccc----------CHH--HH--H--HHhC
Confidence 35665 66655422222 234445589988754 34578899999999987654 663 11 1 3378
Q ss_pred HHHHHHHHHHcCccCCCccccHHHHHHHHHHhh
Q 012516 210 STSINAFVQGIGISRSDSLIRLDRLEYHIREEL 242 (462)
Q Consensus 210 peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~~l 242 (462)
+++++=|+..-|.-.++..++.++|...--.+|
T Consensus 364 vD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~L 396 (578)
T KOG0436|consen 364 VDAVRYFLLREGELGNDGDYSEEKLIKIVNAHL 396 (578)
T ss_pred ccceeeEeeeccccCCCCCccHHHHHHHHHHHH
Confidence 899999999999999999999988866654444
No 82
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=59.94 E-value=12 Score=39.98 Aligned_cols=61 Identities=15% Similarity=0.041 Sum_probs=48.7
Q ss_pred ccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCcccccccc
Q 012516 118 SYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKL 180 (462)
Q Consensus 118 tY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~kLSKR~~ 180 (462)
+|||-+.-..+ +++.++-|.|-..|-..=+-|.+.+|...|.-.+.|.| +.+|+||||+..
T Consensus 175 a~D~~~l~~~~--~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~ 236 (410)
T PRK13354 175 AYDFVHLNRKE--DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAG 236 (410)
T ss_pred hhhHHHHhccC--CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCC
Confidence 56655543322 89999999999999999999999999988866666765 678999999975
No 83
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=59.29 E-value=19 Score=42.07 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=45.4
Q ss_pred eEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHH
Q 012516 161 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 239 (462)
Q Consensus 161 ~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr 239 (462)
.++-++. +..+|.|||||.+... ||. .-+.+ |-++|+|=|++..+....+..|+++.+...+
T Consensus 506 ~v~~hG~v~d~~G~KMSKSlGNvI----------dP~----dvi~~--yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~- 568 (874)
T PRK05729 506 DVYIHGLVRDEQGRKMSKSKGNVI----------DPL----DLIDK--YGADALRFTLAALASPGRDIRFDEERVEGYR- 568 (874)
T ss_pred heEEeeeEECCCCCCcccCCCCCC----------CHH----HHHHH--hChHHHHHHHHhCCCCCCCceeCHHHHHHHH-
Confidence 3333444 4578999999997542 442 22333 6689999999988777778899998886553
Q ss_pred Hhhhc
Q 012516 240 EELNK 244 (462)
Q Consensus 240 ~~l~~ 244 (462)
..+++
T Consensus 569 ~~~nk 573 (874)
T PRK05729 569 NFANK 573 (874)
T ss_pred HHHHH
Confidence 34444
No 84
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=57.42 E-value=11 Score=37.82 Aligned_cols=53 Identities=6% Similarity=-0.174 Sum_probs=44.6
Q ss_pred CccceEeeccccccccHHHHHHHHHhC-CCCCeEEEEeee-cCCCcccccccccc
Q 012516 130 ENITHSLCTLEFETRRASYFWLLHALG-LYQPYVWEYSRL-NVSNTVMSKRKLNF 182 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~aLg-~~~P~~~h~~~l-~~~g~kLSKR~~~~ 182 (462)
.++++|+-|.|-..+-..=+-|.+.++ ...|.-.+.++| .++|.||||+....
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~~ 206 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDGPKFGKSESGP 206 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCCCC
Confidence 567999999999999888889999995 678887777875 68899999998543
No 85
>PLN02882 aminoacyl-tRNA ligase
Probab=56.45 E-value=31 Score=41.66 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCCCCe-EEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCcc-CCCccccHH
Q 012516 156 GLYQPY-VWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS-RSDSLIRLD 232 (462)
Q Consensus 156 g~~~P~-~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s-~~~~~~~~~ 232 (462)
|..+|. ...+++ |..+|.||||+.+... ||. .-+.+ |-++|+|=|++..... ..+..|+.+
T Consensus 594 ~~~pfk~VivhG~vlde~G~KMSKSlGNvI----------dP~----evi~~--YGADaLR~~Ll~s~~~~~~d~~fs~~ 657 (1159)
T PLN02882 594 DKPAFKNLICNGLVLAEDGKKMSKSLKNYP----------DPN----EVIDK--YGADALRLYLINSPVVRAEPLRFKEE 657 (1159)
T ss_pred CCCCcceeEEccEEECCCCCCcccCCCCCC----------CHH----HHHHH--hCcHHHHHHHHhCCcccCcCcccCHH
Confidence 445553 334455 4457999999997653 452 22333 6689999988865544 233567666
Q ss_pred HHHHHHH
Q 012516 233 RLEYHIR 239 (462)
Q Consensus 233 ~l~~~nr 239 (462)
.+....+
T Consensus 658 ~v~~~~~ 664 (1159)
T PLN02882 658 GVFGVVK 664 (1159)
T ss_pred HHHHHHH
Confidence 6654433
No 86
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=55.38 E-value=9.4 Score=38.31 Aligned_cols=65 Identities=14% Similarity=-0.001 Sum_probs=50.1
Q ss_pred cccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCC----CCeEEEEeee-cCCCc-ccccccccc
Q 012516 115 IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY----QPYVWEYSRL-NVSNT-VMSKRKLNF 182 (462)
Q Consensus 115 ~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~----~P~~~h~~~l-~~~g~-kLSKR~~~~ 182 (462)
.||..+ +.|=...+.++++.|.|-..+-..=+-+.+.+|.. +|...+.+.| .++|. ||||++...
T Consensus 136 ~Yp~lQ---aaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns 206 (292)
T PF00579_consen 136 SYPLLQ---AADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNS 206 (292)
T ss_dssp HHHHHH---HHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGG
T ss_pred Eccccc---ccceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCcc
Confidence 355543 22333566679999999999999999999999987 9998888876 46788 999999763
No 87
>PLN02959 aminoacyl-tRNA ligase
Probab=53.48 E-value=45 Score=40.02 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=51.0
Q ss_pred ccceEeeccccccccHHHHHHHHHhCC--CCC--e-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHH
Q 012516 131 NITHSLCTLEFETRRASYFWLLHALGL--YQP--Y-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 205 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aLg~--~~P--~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~ 205 (462)
-++--+=|.|++.+ ..+..|+....+ ..| . +...+++..+|.||||+++... ||. ..+.
T Consensus 671 P~Dl~~sG~Dii~~-wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI----------~p~----diI~- 734 (1084)
T PLN02959 671 PFDLRVSGKDLIQN-HLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFL----------TLR----QAIE- 734 (1084)
T ss_pred CCeEEEecccHHHH-HHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcC----------CHH----HHHH-
Confidence 34555567777655 334455544322 233 2 4455666689999999997542 331 2222
Q ss_pred cCCCHHHHHHHHHHcCccCCCccccHHH
Q 012516 206 RGVTSTSINAFVQGIGISRSDSLIRLDR 233 (462)
Q Consensus 206 rG~~peAi~~f~~~lG~s~~~~~~~~~~ 233 (462)
.|-++|+|=+|+..|-...+..|+.+.
T Consensus 735 -kyGADalRl~la~~~~~~~D~nF~~k~ 761 (1084)
T PLN02959 735 -EFSADATRFALADAGDGVDDANFVFET 761 (1084)
T ss_pred -HhCchHHHHHHhhcCCccCCCCccHHH
Confidence 277888888887766555566666653
No 88
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=52.67 E-value=6.9 Score=40.33 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=47.7
Q ss_pred cccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhC------CCCCeEEEE---eee-cCCCcccccccc
Q 012516 115 IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY---SRL-NVSNTVMSKRKL 180 (462)
Q Consensus 115 ~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg------~~~P~~~h~---~~l-~~~g~kLSKR~~ 180 (462)
.||..+=|-++ +.+.++|.-|.|-...-..=+-|.+.|| +..|...|- ++| .++|+||||++.
T Consensus 126 ~YP~lqaaDil---~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~ 198 (328)
T TIGR00233 126 SYPVLQAADIL---LYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDP 198 (328)
T ss_pred cchHHHHhhhh---hcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCC
Confidence 46666655544 6688899999999888888888889998 777876653 333 456789999985
No 89
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=51.59 E-value=13 Score=38.43 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=43.6
Q ss_pred CCCccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCc--cccccc
Q 012516 128 SIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNT--VMSKRK 179 (462)
Q Consensus 128 ~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~--kLSKR~ 179 (462)
.+.+.++|+-|.|-..+-..=+-|.+.+|...|...+.+.| +++|. ||||+.
T Consensus 165 l~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~ 219 (329)
T PRK08560 165 FYLDVDIAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSK 219 (329)
T ss_pred HHhCCCEEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCC
Confidence 35688999999999988888888899999988987777765 57776 999998
No 90
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=49.37 E-value=55 Score=36.53 Aligned_cols=82 Identities=15% Similarity=0.021 Sum_probs=44.5
Q ss_pred CccceEeeccccccccHHHHHHHH-HhCCCC--CeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHH
Q 012516 130 ENITHSLCTLEFETRRASYFWLLH-ALGLYQ--PYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 205 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~-aLg~~~--P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~ 205 (462)
.-++-.+-|.|++.+=-....+.. +|-=.. +.....+. +..+|.||||+++... | ...+.+
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi----------~-----p~~ii~ 577 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVI----------D-----PEDIIE 577 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB------------B-----HHHHHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCccc----------C-----HHHHHH
Confidence 346777888888755433333333 232122 44555565 5678999999997542 2 233333
Q ss_pred cCCCHHHHHHHHHHcCccCCCc
Q 012516 206 RGVTSTSINAFVQGIGISRSDS 227 (462)
Q Consensus 206 rG~~peAi~~f~~~lG~s~~~~ 227 (462)
+ |-++|+|=+++..+-...+.
T Consensus 578 ~-yGaD~lRl~~~~~~~~~~D~ 598 (601)
T PF00133_consen 578 K-YGADALRLWLASSADPGQDI 598 (601)
T ss_dssp H-T-HHHHHHHHHHHS-TTS-E
T ss_pred H-hCcHHHHHHHHhcCCcccCc
Confidence 3 77888888887655444443
No 91
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=47.77 E-value=62 Score=38.10 Aligned_cols=88 Identities=18% Similarity=0.047 Sum_probs=52.1
Q ss_pred ccceEeeccccccccHHHHHHHHHh---CCCCCe-EEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHH
Q 012516 131 NITHSLCTLEFETRRASYFWLLHAL---GLYQPY-VWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 205 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aL---g~~~P~-~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~ 205 (462)
..+-.+=|.|++ +.-.|..+..++ |..+|. +.-++. +..+|.||||+.+... ||. .-+.
T Consensus 545 P~Dl~~~G~Di~-r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvI----------dP~----~ii~- 608 (912)
T PRK05743 545 PADLYLEGSDQH-RGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVI----------DPQ----DVIK- 608 (912)
T ss_pred CceEEEeccccc-chHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcC----------CHH----HHHH-
Confidence 345556667765 233333344433 445553 223343 5668999999997543 442 1122
Q ss_pred cCCCHHHHHHHHHHcCccCCCccccHHHHHH
Q 012516 206 RGVTSTSINAFVQGIGISRSDSLIRLDRLEY 236 (462)
Q Consensus 206 rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~ 236 (462)
.|-++|+|=|++. +-...+..|+.+.|..
T Consensus 609 -~yGaDalR~~ll~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 609 -KYGADILRLWVAS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred -hcChHHHHHHHHh-cCCCCCeeecHHHHHH
Confidence 3779999999886 5445666777776644
No 92
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=46.82 E-value=62 Score=38.77 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=43.9
Q ss_pred EEEEeee-cCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHH
Q 012516 162 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240 (462)
Q Consensus 162 ~~h~~~l-~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~ 240 (462)
++-++.+ ..+|.||||+.+... ||. ..+.+ |-++++|=||+..+....+..|+++.|...+ .
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNvI----------dP~----dvIe~--yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~-~ 587 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNVI----------DPL----VITEQ--YGADALRFTLAALTAQGRDIKLAKERIEGYR-A 587 (1052)
T ss_pred eEecccEECCCCCCccCCCCCCC----------CHH----HHHHH--hCcHHHHHHHHhcCCCCCCCcccHHHHHHHH-H
Confidence 3344444 458999999997542 442 22333 6789999999987777778888988875543 3
Q ss_pred hhhc
Q 012516 241 ELNK 244 (462)
Q Consensus 241 ~l~~ 244 (462)
.+++
T Consensus 588 f~nk 591 (1052)
T PRK14900 588 FANK 591 (1052)
T ss_pred HHHH
Confidence 4444
No 93
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=44.73 E-value=14 Score=38.31 Aligned_cols=63 Identities=17% Similarity=0.024 Sum_probs=46.8
Q ss_pred cccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhC------CCCCeEE---EEeee-cCCCcccccccc
Q 012516 115 IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVW---EYSRL-NVSNTVMSKRKL 180 (462)
Q Consensus 115 ~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg------~~~P~~~---h~~~l-~~~g~kLSKR~~ 180 (462)
.||.-+=|-.+ +.+.+||.-|.|-...-..-+-|.+.|| +..|... |.+++ .++|.||||+..
T Consensus 136 ~YPvLqAADIl---~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~ 208 (332)
T PRK12556 136 TYPILMAADIL---LFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYG 208 (332)
T ss_pred hchHHHhhhhh---hccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCC
Confidence 47766655433 5678999999999988888888888887 5667654 45555 467899999974
No 94
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=43.97 E-value=41 Score=40.81 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=41.0
Q ss_pred ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCcc-CCCccccHHHHHHHHHHhhhc
Q 012516 168 LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS-RSDSLIRLDRLEYHIREELNK 244 (462)
Q Consensus 168 l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s-~~~~~~~~~~l~~~nr~~l~~ 244 (462)
|..+|.||||+.+... ||. .-+.+ |-++|+|=|++..+.. ..+..|+.+.+....|+.+.+
T Consensus 714 ld~dG~KMSKSlGNvI----------DP~----evI~k--YGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~k 775 (1205)
T PTZ00427 714 LASDGKKMSKRLKNYP----------DPL----YILDK--YGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILP 775 (1205)
T ss_pred EcCCCCCcccCCCCCC----------CHH----HHHHh--cCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHH
Confidence 5668999999997543 552 22333 5689999999876543 456678887776555555433
No 95
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.72 E-value=1e+02 Score=36.00 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=37.1
Q ss_pred ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHH
Q 012516 168 LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 235 (462)
Q Consensus 168 l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~ 235 (462)
.+..|.||||+++... ||. .-+. -|-.+|++=+++..+..-.+..+++++++
T Consensus 519 rDe~G~KMSKS~GNvI----------DP~----d~I~--~yGaDAlRf~la~~~~~G~Di~~~~~~~~ 570 (877)
T COG0525 519 RDEQGRKMSKSKGNVI----------DPL----DVID--KYGADALRFTLASLASPGRDINFDEKRVE 570 (877)
T ss_pred EcCCCCCCcccCCCcC----------CHH----HHHH--HhChHHHHHHHHhccCCCcccCcCHHHHH
Confidence 4678999999998543 662 2222 35578888888887777777788887765
No 96
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=37.84 E-value=36 Score=25.92 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHc
Q 012516 144 RRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI 220 (462)
Q Consensus 144 ~t~~q~~l~~aLg~~~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~l 220 (462)
-++..+.-+..-|+-+|.. +-.-.+...|-+++. ++..+..||+.|+++++|...+.++
T Consensus 12 vs~~tlr~~~~~gli~~~~----~~~~g~r~y~~~dl~--------------~l~~i~~lr~~g~~~~~i~~~l~l~ 70 (70)
T smart00422 12 VSVRTLRYYERIGLLPPPI----RTEGGYRLYSDEDLE--------------RLRFIKRLKELGFSLEEIKELLELL 70 (70)
T ss_pred cCHHHHHHHHHCCCCCCCc----cCCCCCEecCHHHHH--------------HHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3566666677777755420 001112344444443 3567889999999999999988654
No 97
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=37.67 E-value=28 Score=32.26 Aligned_cols=20 Identities=30% Similarity=0.364 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCeEEeCCCH
Q 012516 19 YELAVELIRRGHAYVDHQTP 38 (462)
Q Consensus 19 ~~~a~~Li~~G~AY~c~cs~ 38 (462)
.|.|++|-++|..|+|.||.
T Consensus 117 ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 117 LELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred HHHHHHHHhcCcEEEeeccc
Confidence 58899999999999999986
No 98
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=34.84 E-value=1.1e+02 Score=36.33 Aligned_cols=85 Identities=19% Similarity=0.076 Sum_probs=49.5
Q ss_pred eEeeccccccccHHHHHHHHHhCC---CCC-eEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCC
Q 012516 134 HSLCTLEFETRRASYFWLLHALGL---YQP-YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGV 208 (462)
Q Consensus 134 HviRg~e~l~~t~~q~~l~~aLg~---~~P-~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~ 208 (462)
..+=|.|.+ +.--|..|+.++++ .+| .++=++. +..+|.||||+.+... ||. .-+. .|
T Consensus 586 ~~~eG~Di~-rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvI----------dP~----~ii~--~y 648 (961)
T PRK13804 586 LYLEGSDQH-RGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTV----------SPQ----DVIK--QS 648 (961)
T ss_pred EEEEEcccc-cHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcC----------CHH----HHHH--hc
Confidence 444555553 22334455555543 343 3333344 5669999999987543 442 1122 47
Q ss_pred CHHHHHHHHHHcCccCCCccccHHHHHH
Q 012516 209 TSTSINAFVQGIGISRSDSLIRLDRLEY 236 (462)
Q Consensus 209 ~peAi~~f~~~lG~s~~~~~~~~~~l~~ 236 (462)
-++++|=|++... -.++..|+.+.|..
T Consensus 649 GaD~lRl~lls~~-~~~D~~fs~~~l~~ 675 (961)
T PRK13804 649 GADILRLWVASVD-YSDDQRIGKEILKQ 675 (961)
T ss_pred CHHHHHHHHHhCC-CCCCcccCHHHHHH
Confidence 8999999988633 34556777776544
No 99
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=33.29 E-value=58 Score=21.78 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=15.9
Q ss_pred hHHHHHHcCCCHHHHHHHHHH
Q 012516 199 TLAGLRRRGVTSTSINAFVQG 219 (462)
Q Consensus 199 ti~~lr~rG~~peAi~~f~~~ 219 (462)
-+..-++.|++++.+++|+..
T Consensus 8 Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 8 LIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 467778999999999999864
No 100
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=32.78 E-value=45 Score=33.96 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=27.0
Q ss_pred CCcccCCceeccc--CHHHHHHHHHHHHhCCCeEE
Q 012516 1 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 33 (462)
Q Consensus 1 LGl~wD~~~~QS~--r~~~y~~~a~~Li~~G~AY~ 33 (462)
||+++|..++.|+ +.+.-.+..++|.++|.+|.
T Consensus 82 LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 82 LNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred cCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 6899996655555 67778999999999999994
No 101
>cd01105 HTH_GlnR-like Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.97 E-value=1.2e+02 Score=24.77 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHhCCCCCeEEEEeeecC-CCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcC
Q 012516 143 TRRASYFWLLHALGLYQPYVWEYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 221 (462)
Q Consensus 143 ~~t~~q~~l~~aLg~~~P~~~h~~~l~~-~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG 221 (462)
.-++.++..|+.-|+-+|. +-+- ....-|-+++. ++..|..|++.|++.+.|..++...+
T Consensus 12 gvs~~tLR~ye~~Gll~p~-----r~~~~g~R~Ys~~dv~--------------~l~~I~~Lr~~G~sl~~i~~~l~~~~ 72 (88)
T cd01105 12 GVSPRQLRYWEEKGLIKSI-----RSDGGGQRKYSLADVD--------------RLLVIKELLDEGFTLAAAVEKLRRRR 72 (88)
T ss_pred CcCHHHHHHHHHCCCCCCC-----ccCCCCceecCHHHHH--------------HHHHHHHHHHCCCCHHHHHHHHHHcc
Confidence 3467777888888875553 1111 12344444433 35678999999999999999987544
No 102
>PLN02843 isoleucyl-tRNA synthetase
Probab=29.65 E-value=1.2e+02 Score=36.21 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=34.0
Q ss_pred ecCCCcccccccccccccccccCCCCCchhhhHHHHHHc--------CCCHHHHHHHHHHcCccCCCccccHHHHH
Q 012516 168 LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR--------GVTSTSINAFVQGIGISRSDSLIRLDRLE 235 (462)
Q Consensus 168 l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~r--------G~~peAi~~f~~~lG~s~~~~~~~~~~l~ 235 (462)
+..+|.||||+.+... || ..+.+. -|-++|+|=|++.... .++..|+.+.|.
T Consensus 605 ld~~G~KMSKSlGNvI----------~p-----~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~-~~d~~~s~~~l~ 664 (974)
T PLN02843 605 LDEKGFKMSKSLGNVV----------DP-----RLVIEGGKNQKQEPAYGADVLRLWVASVDY-TGDVLIGPQILK 664 (974)
T ss_pred ECCCCCCcCCCCCCcC----------CH-----HHHHhhccccccccccChHHHHHHHHhccc-CCCceeCHHHHH
Confidence 5678999999987543 33 223331 3789999998876443 346667766554
No 103
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=28.54 E-value=2.2e+02 Score=30.34 Aligned_cols=50 Identities=14% Similarity=-0.072 Sum_probs=39.4
Q ss_pred ccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCcccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKL 180 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~kLSKR~~ 180 (462)
+++.++=|.|-..|-..=+-|.+.+|..++.-.+.|.| +.+|+||||+..
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~ 238 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEG 238 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCC
Confidence 78888889999888777788888888766554555654 678999999974
No 104
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=27.00 E-value=53 Score=36.09 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCcccCCceecc--cCHHHHHHHHHHHHhCCCeEE
Q 012516 1 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 33 (462)
Q Consensus 1 LGl~wD~~~~QS--~r~~~y~~~a~~Li~~G~AY~ 33 (462)
||+.||..++++ ++.+.-++...+|.++|.+|.
T Consensus 86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 689999777777 788999999999999999994
No 105
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=26.93 E-value=3.5e+02 Score=23.01 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhCCCCCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHc
Q 012516 145 RASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI 220 (462)
Q Consensus 145 t~~q~~l~~aLg~~~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~l 220 (462)
++..+..|+..|+=+|. +-.-.+..-|..++ .++..|..||+.|++.+.|..++...
T Consensus 13 s~~tlR~Ye~~GLl~p~-----r~~~g~R~Y~~~~~--------------~~l~~I~~lr~~G~sl~eI~~~l~~~ 69 (112)
T cd01282 13 SVRSLRYYEEQGLLVPE-----RSANGYRDYDEAAV--------------DRVRQIRRLLAAGLTLEEIREFLPCL 69 (112)
T ss_pred CHHHHHHHHHCCCCCCC-----cCCCCCeecCHHHH--------------HHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 66777888888886663 21112234444443 24667899999999999999998753
No 106
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.12 E-value=1.1e+02 Score=32.58 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=55.1
Q ss_pred CcEEEEEecCCCCCCCCcccccc---ccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cC
Q 012516 95 DLIAYRIKFTPHPHAGDKWCIYP---SYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NV 170 (462)
Q Consensus 95 D~Vi~R~~~~~h~~~gd~~~~~P---tY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~ 170 (462)
|.+.-|.... ++..-..+ +|| .|||.+-=.|. -+=|.|-.-|--.=+-|.+.+|..+|.-.|.|.| .+
T Consensus 149 d~~~~R~~~~-~~is~~Ef-~YpLmQayD~~~L~~dl------q~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~l 220 (401)
T COG0162 149 DDVKKRLERE-QGISFTEF-NYPLLQAYDFVYLNKDL------QLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGL 220 (401)
T ss_pred hhHHHHhccC-CCCchhhh-hhHHHHHHHHHHHccch------hcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCC
Confidence 5555555432 22221222 455 68888776662 3568888888777888889999988888899975 68
Q ss_pred CCccccccccc
Q 012516 171 SNTVMSKRKLN 181 (462)
Q Consensus 171 ~g~kLSKR~~~ 181 (462)
+|+||||+...
T Consensus 221 dG~KmgKs~~~ 231 (401)
T COG0162 221 DGKKMGKSEGG 231 (401)
T ss_pred CCCcccccCCC
Confidence 99999999864
No 107
>cd04767 HTH_HspR-like_MBC Helix-Turn-Helix DNA binding domain of putative HspR-like transcription regulators. Putative helix-turn-helix (HTH) transcription regulator HspR-like proteins. Unlike the characterized HspR, these proteins have a C-terminal domain with putative metal binding cysteines (MBC). Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind spe
Probab=25.90 E-value=1.6e+02 Score=26.06 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=42.7
Q ss_pred ccccHHHHHHHHHhCCCCCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHH-cCCCHHHHHHHHHHc
Q 012516 142 ETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR-RGVTSTSINAFVQGI 220 (462)
Q Consensus 142 l~~t~~q~~l~~aLg~~~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~-rG~~peAi~~f~~~l 220 (462)
+.-++..+..|+..|+-+|. + .-.+..-|..++. ++-.|..|++ .|++.++|+.++..+
T Consensus 11 ~GVs~~TLR~wE~~GLl~p~-----r-~~G~R~Ys~~dv~--------------rL~~I~~L~~e~G~~l~eI~~~L~l~ 70 (120)
T cd04767 11 LNIHPETLRIWERHGLIKPA-----R-RNGQRLYSNNDLK--------------RLRFIKKLINEKGLNIAGVKQILSMY 70 (120)
T ss_pred HCcCHHHHHHHHHCCCCCCc-----C-CCCcEEECHHHHH--------------HHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34577888899999987774 1 1233455555554 3557889998 999999999998765
No 108
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=25.54 E-value=3.1e+02 Score=24.52 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=38.1
Q ss_pred cHHHHHHHHHhCCCCCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHc
Q 012516 145 RASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI 220 (462)
Q Consensus 145 t~~q~~l~~aLg~~~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~l 220 (462)
++.-+..|+..|+=+|. +-.-.+..-|..++. ++..|..||..|++.+.|.+++..+
T Consensus 14 s~~tLRyYE~~GLl~p~-----r~~~g~R~Y~~~dl~--------------~l~~I~~lr~~G~sl~eI~~~l~~~ 70 (139)
T cd01110 14 AVSALHFYEQKGLIASW-----RNAGNQRRYPRDVLR--------------RIAFIKVAQRLGLSLAEIAEALATL 70 (139)
T ss_pred CHHHHHHHHHCCCCCCC-----cCCCCCeEECHHHHH--------------HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 66677788888875552 211122344444433 3567899999999999999998743
No 109
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=25.50 E-value=3.1e+02 Score=24.64 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHc
Q 012516 144 RRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI 220 (462)
Q Consensus 144 ~t~~q~~l~~aLg~~~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~l 220 (462)
-|+.-+..|+..|+=+|. +-.-.+..=|..++. ++..|..||+.|++.+.|..|+..+
T Consensus 13 vs~~tLRyYE~~GLl~~~-----r~~~g~R~Y~~~di~--------------~l~~I~~lr~~G~sL~eI~~~l~~~ 70 (142)
T TIGR01950 13 VAVSALHFYESKGLITSI-----RNSGNQRRYKRDVLR--------------RVAVIKAAQRVGIPLATIGEALAVL 70 (142)
T ss_pred cCHHHHHHHHHCCCCCCc-----cCCCCCEEECHHHHH--------------HHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 467778888988886552 211122333433332 3557889999999999999999754
No 110
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=25.28 E-value=64 Score=35.20 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=27.0
Q ss_pred CCcccCCceeccc--CHHHHHHHHHHHHhCCCeEE
Q 012516 1 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 33 (462)
Q Consensus 1 LGl~wD~~~~QS~--r~~~y~~~a~~Li~~G~AY~ 33 (462)
||+.+|..++.++ +.+...++.++|.++|.+|.
T Consensus 81 LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 81 LNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred hCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 6899986554454 78889999999999999993
No 111
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=25.16 E-value=1.5e+02 Score=34.44 Aligned_cols=86 Identities=20% Similarity=0.127 Sum_probs=50.1
Q ss_pred CccceEeeccccccc-----cHHHHHHHHHhC-C--CCC--eEEEEeeecCCCcccccccccccccccccCCCCCchhhh
Q 012516 130 ENITHSLCTLEFETR-----RASYFWLLHALG-L--YQP--YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMT 199 (462)
Q Consensus 130 ~gITHviRg~e~l~~-----t~~q~~l~~aLg-~--~~P--~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~t 199 (462)
+-+.-.+=|.||..+ +--|..|. .+| + ..| ...|.+.+ ||||+.+... ||
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l~-~~~~~~~~~Pfk~v~~~G~v-----KMSKS~GN~i----------~p---- 581 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVLR-DLGLVSSDEPFKKLLTQGMV-----KMSKSKGNVV----------DP---- 581 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHHH-HhhcccCCcchhhheecCcE-----EeCCCCCCCC----------CH----
Confidence 557777778887544 22222222 223 1 234 23344444 9999997532 23
Q ss_pred HHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHH
Q 012516 200 LAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 237 (462)
Q Consensus 200 i~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~ 237 (462)
..+.+ .|.++|+|=|++..|--.++..++.+.|...
T Consensus 582 -~~~i~-~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~ 617 (805)
T PRK00390 582 -DDIIE-KYGADTARLFEMFAGPPEKDLEWSDSGVEGA 617 (805)
T ss_pred -HHHHH-HcChHHHHHHHHhcCCccCCcccCHHHHHHH
Confidence 33333 2889999999988776556666666655443
No 112
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.07 E-value=2.8e+02 Score=23.73 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCcc
Q 012516 144 RRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 223 (462)
Q Consensus 144 ~t~~q~~l~~aLg~~~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s 223 (462)
=|+.-+-.|+..|+=+|.. +-+ .+..-|-+++. ++..|..||+.|++.+.|..++......
T Consensus 12 vs~~tLryYe~~GLi~p~~----~~~-~yR~Y~~~d~~--------------~l~~I~~lr~~G~sl~eI~~~l~~~~~~ 72 (116)
T cd04769 12 VTIKAIRLYEEKGLLPSPK----RSG-NYRVYDAQHVE--------------CLRFIKEARQLGFTLAELKAIFAGHEGR 72 (116)
T ss_pred cCHHHHHHHHHCCCCCCCC----CCC-CceeeCHHHHH--------------HHHHHHHHHHcCCCHHHHHHHHhccccC
Confidence 3667777888888855531 112 33455555543 3456889999999999999998765544
No 113
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=24.69 E-value=1.3e+02 Score=35.70 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHcCccCCCccccHHHHHHHHHHhhhcc
Q 012516 208 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKT 245 (462)
Q Consensus 208 ~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~~l~~~ 245 (462)
|-++|+|=|++..+..-.+..++.+.+... |..+++.
T Consensus 640 yGaDalR~~l~~~~~~~~Di~~~~~~v~~~-~~f~nkl 676 (995)
T PTZ00419 640 CGTDALRFGLLAYTQQGRNINLDINRVVGY-RHFCNKL 676 (995)
T ss_pred cCcHHHHHHHHhcCCCCCCccccHHHHHHH-HHHHHHH
Confidence 678899999988776666677777666532 4444433
No 114
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=23.55 E-value=66 Score=35.26 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=35.1
Q ss_pred CccceEeeccccccccHHHHHHHH----HhCCCCCeEEEEeeecCC-Ccccccccccc
Q 012516 130 ENITHSLCTLEFETRRASYFWLLH----ALGLYQPYVWEYSRLNVS-NTVMSKRKLNF 182 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~----aLg~~~P~~~h~~~l~~~-g~kLSKR~~~~ 182 (462)
.|||-=-=|.||.++--.|.-... -+|+++|.-.-|-...+. +.+||++++..
T Consensus 228 lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~~ 285 (521)
T COG1384 228 LGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGNV 285 (521)
T ss_pred cCcccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCcE
Confidence 455555679999997777765444 457888764333344444 59999999754
No 115
>PLN02486 aminoacyl-tRNA ligase
Probab=23.15 E-value=40 Score=35.61 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=47.1
Q ss_pred cccccceeeee---ecCCCc----c-ceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCC--ccccccccc
Q 012516 115 IYPSYDYAHCI---VDSIEN----I-THSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 181 (462)
Q Consensus 115 ~~PtY~fA~~V---DD~l~g----I-THviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g--~kLSKR~~~ 181 (462)
.||.-+=|.++ -|++.+ + ++|=+|.|-...-..-+-+.+.||...|...|...+ .+.| +||||+...
T Consensus 195 ~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~n 272 (383)
T PLN02486 195 SFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPN 272 (383)
T ss_pred hhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCCCcceeccccccCCCCCCCcCcCcCCC
Confidence 47766655544 244444 3 788899996666666688889999888988775554 4566 799999854
No 116
>PLN02381 valyl-tRNA synthetase
Probab=21.91 E-value=1.3e+02 Score=36.12 Aligned_cols=28 Identities=4% Similarity=0.005 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHcCccCCCccccHHHHH
Q 012516 208 VTSTSINAFVQGIGISRSDSLIRLDRLE 235 (462)
Q Consensus 208 ~~peAi~~f~~~lG~s~~~~~~~~~~l~ 235 (462)
|-++|+|=+++..+....+..+++..+.
T Consensus 710 yGADalR~~l~~~~~~~~di~~~~~~v~ 737 (1066)
T PLN02381 710 CGTDALRFALVSYTAQSDKINLDILRVV 737 (1066)
T ss_pred cChHHHHHHHHcCCccccccCccHHHHH
Confidence 5688999888887766666667766554
No 117
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=21.81 E-value=2.1e+02 Score=24.45 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=40.2
Q ss_pred cHHHHHHHHHhCCCCCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcC
Q 012516 145 RASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 221 (462)
Q Consensus 145 t~~q~~l~~aLg~~~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG 221 (462)
++..+-.|+..|+=+|.. +-.-.+..-|..++. ++..|..+++.|++.+.|..++..+.
T Consensus 13 s~~tlR~ye~~GLl~p~~----r~~~g~R~Y~~~~l~--------------~l~~I~~lr~~G~~l~~I~~~l~~~~ 71 (107)
T cd01111 13 SVHIVRDYLLRGLLHPVA----RTEGGYGLFDDCALQ--------------RLRFVRAAFEAGIGLDELARLCRALD 71 (107)
T ss_pred CHHHHHHHHHCCCCCCCC----cCCCCCeecCHHHHH--------------HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 567777888999865521 211123444555543 45678999999999999999987653
No 118
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=21.13 E-value=87 Score=24.10 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=30.0
Q ss_pred ccccccCCCCCceeecceEeccccccCCCCCeEEEEEee
Q 012516 394 DDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLG 432 (462)
Q Consensus 394 ~~~~~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~G 432 (462)
..+.+.+.|++-.++.+|+.=..=..++.||.+=|.++|
T Consensus 19 ~~lr~~~k~~~DI~I~NGF~~~~d~~L~e~D~v~~IkkG 57 (57)
T PF14453_consen 19 FELRKESKPDADIVILNGFPTKEDIELKEGDEVFLIKKG 57 (57)
T ss_pred HHHHHhhCCCCCEEEEcCcccCCccccCCCCEEEEEeCC
Confidence 345566777777777788876665669999999999887
No 119
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=20.90 E-value=91 Score=28.91 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=29.3
Q ss_pred CCCCCchhhhHHHHHHcCCCHHHHHHHHHHcC-ccCCCc
Q 012516 190 DGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG-ISRSDS 227 (462)
Q Consensus 190 ~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG-~s~~~~ 227 (462)
+.|.|-+.-.|+.|...|++...|-. .|| +|++..
T Consensus 1 M~Wtde~~~~L~~lw~~G~SasqIA~---~lg~vsRnAV 36 (162)
T PF07750_consen 1 MSWTDERVERLRKLWAEGLSASQIAR---QLGGVSRNAV 36 (162)
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHH---HhCCcchhhh
Confidence 46999999999999999999999975 556 777644
No 120
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.58 E-value=79 Score=32.55 Aligned_cols=74 Identities=18% Similarity=0.105 Sum_probs=43.3
Q ss_pred eeccccccccHHHHHHHHHh---CCCCCe-EEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCH
Q 012516 136 LCTLEFETRRASYFWLLHAL---GLYQPY-VWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTS 210 (462)
Q Consensus 136 iRg~e~l~~t~~q~~l~~aL---g~~~P~-~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~p 210 (462)
+-|.|.+.+- .+..++-++ |..+|. +.=.+. +..+|.||||+.+... ++..+.+. +.+
T Consensus 257 ~~GkDii~~w-f~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i---------------~~~~~~~~-~~~ 319 (338)
T cd00818 257 LEGSDQTRGW-FYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYV---------------DPQEVVDK-YGA 319 (338)
T ss_pred eecchHHhHH-HHHHHHHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCcC---------------CHHHHHHH-cCc
Confidence 4488887533 333333333 333332 222233 4568999999997542 34455554 889
Q ss_pred HHHHHHHHHcCccCCC
Q 012516 211 TSINAFVQGIGISRSD 226 (462)
Q Consensus 211 eAi~~f~~~lG~s~~~ 226 (462)
+|++=|++..+-..++
T Consensus 320 D~~R~~l~~~~~~~~d 335 (338)
T cd00818 320 DALRLWVASSDVYAED 335 (338)
T ss_pred HHHHHHHHhCCCccCC
Confidence 9999998876643333
No 121
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=20.51 E-value=1.6e+02 Score=22.15 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=18.7
Q ss_pred hhhhHHHHHHcCCCHHHHHHHHHH
Q 012516 196 CLMTLAGLRRRGVTSTSINAFVQG 219 (462)
Q Consensus 196 r~~ti~~lr~rG~~peAi~~f~~~ 219 (462)
|+.-|..+|..|++-+.|++|+..
T Consensus 3 rL~~I~~~r~lGfsL~eI~~~l~l 26 (65)
T PF09278_consen 3 RLQFIRRLRELGFSLEEIRELLEL 26 (65)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhc
Confidence 455688999999999999999955
No 122
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=20.40 E-value=1.1e+02 Score=30.78 Aligned_cols=28 Identities=32% Similarity=0.235 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhC--CCeEEeCCCHHHHHH
Q 012516 16 QELYELAVELIRR--GHAYVDHQTPEEIKE 43 (462)
Q Consensus 16 ~~y~~~a~~Li~~--G~AY~c~cs~eel~~ 43 (462)
++.++.++.|.+. ++.|+|+||.+.-+.
T Consensus 209 ~~l~~~~~~l~el~v~~i~pcHCTg~~a~~ 238 (259)
T COG1237 209 ERLEEVADYLKELGVEKIYPCHCTGEKAKR 238 (259)
T ss_pred HHHHHHHHHHHhcCCCeEEecCCCCHHHHH
Confidence 4556677777655 599999999886553
No 123
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.16 E-value=4.3e+02 Score=21.58 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=36.4
Q ss_pred cHHHHHHHHHhCCCCCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCc
Q 012516 145 RASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGI 222 (462)
Q Consensus 145 t~~q~~l~~aLg~~~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~ 222 (462)
++..+.-|...|+=+|. +..-.+..-|.+++. ++..+..|++.|++++.|..++..+.-
T Consensus 13 ~~~tlr~~~~~Gll~~~-----~~~~g~r~y~~~dv~--------------~l~~i~~l~~~g~~~~~i~~~l~~~~~ 71 (100)
T cd00592 13 SVRTLRYYEEKGLLPPE-----RSENGYRLYSEEDLE--------------RLRLIRRLRELGLSLKEIRELLDARDE 71 (100)
T ss_pred CHHHHHHHHHCCCcCCC-----cCCCCCcccCHHHHH--------------HHHHHHHHHHcCCCHHHHHHHHhcccc
Confidence 45555566666764342 111123344554443 345678899999999999999876543
Done!