Query 012516
Match_columns 462
No_of_seqs 235 out of 2089
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qtq_A GLNRS, protein (glutami 100.0 2E-127 6E-132 1021.2 37.5 451 1-461 88-552 (553)
2 2hz7_A Glutaminyl-tRNA synthet 100.0 2E-123 8E-128 1025.7 40.0 448 1-460 128-634 (851)
3 3aii_A Glutamyl-tRNA synthetas 100.0 1E-105 4E-110 853.1 27.9 387 1-447 158-548 (553)
4 4gri_A Glutamate--tRNA ligase; 100.0 8.5E-56 2.9E-60 472.4 15.1 224 1-248 86-354 (512)
5 4g6z_A Glutamate-tRNA ligase; 100.0 1.1E-55 3.9E-60 465.9 14.2 211 1-247 87-343 (490)
6 2ja2_A Glutamyl-tRNA synthetas 100.0 2E-54 6.8E-59 458.4 14.7 221 1-248 68-338 (498)
7 1j09_A Glutamyl-tRNA synthetas 100.0 2.7E-54 9.3E-59 455.2 15.2 223 1-262 63-314 (468)
8 2cfo_A Glutamyl-tRNA synthetas 100.0 5.7E-54 2E-58 455.2 17.5 194 1-224 63-281 (492)
9 3afh_A Glutamyl-tRNA synthetas 100.0 6.3E-51 2.1E-55 431.3 9.6 203 1-247 87-334 (488)
10 2o5r_A Glutamyl-tRNA synthetas 100.0 1.7E-49 5.7E-54 420.5 12.6 213 1-248 75-343 (481)
11 3al0_C Glutamyl-tRNA(Gln) amid 100.0 4.3E-49 1.5E-53 425.7 8.0 203 1-247 191-438 (592)
12 1nzj_A Hypothetical protein YA 100.0 3E-44 1E-48 359.2 9.9 185 1-233 67-269 (298)
13 1irx_A Lysyl-tRNA synthetase; 99.5 2.6E-15 9E-20 160.6 -2.5 190 1-236 118-325 (523)
14 1li5_A Cysrs, cysteinyl-tRNA s 99.1 1E-10 3.5E-15 123.3 10.8 196 1-239 103-314 (461)
15 1iq0_A Arginyl-tRNA synthetase 99.0 2.7E-10 9.2E-15 123.6 4.6 187 1-252 230-483 (592)
16 3c8z_A Cysteinyl-tRNA syntheta 98.9 1.3E-08 4.5E-13 105.7 12.7 203 1-240 120-341 (414)
17 2csx_A Methionyl-tRNA syntheta 98.8 3.3E-08 1.1E-12 104.7 12.4 206 1-239 87-344 (497)
18 3tqo_A Cysteinyl-tRNA syntheta 98.6 1.1E-07 3.8E-12 100.0 12.0 194 1-237 106-315 (462)
19 3fnr_A Arginyl-tRNA synthetase 98.6 2.9E-08 9.9E-13 104.6 4.8 163 1-237 158-331 (464)
20 2d5b_A Methionyl-tRNA syntheta 98.5 3.3E-07 1.1E-11 97.0 9.5 91 131-239 251-346 (500)
21 2dlc_X Tyrosyl-tRNA synthetase 98.4 5.1E-08 1.7E-12 100.8 2.0 120 1-182 112-235 (394)
22 2cyb_A Tyrosyl-tRNA synthetase 98.0 2E-06 7E-11 86.4 2.1 118 1-180 100-220 (323)
23 3sp1_A Cysteinyl-tRNA syntheta 97.9 3.6E-05 1.2E-09 81.5 11.3 199 1-238 133-347 (501)
24 3h99_A Methionyl-tRNA syntheta 97.9 6.9E-05 2.4E-09 80.5 13.4 102 127-245 297-402 (560)
25 1n3l_A Tyrosyl-tRNA synthetase 97.7 9.8E-06 3.4E-10 83.0 2.8 119 1-181 108-229 (372)
26 1f7u_A Arginyl-tRNA synthetase 97.6 1.5E-05 5.2E-10 86.5 2.2 181 1-252 284-499 (607)
27 2x1l_A Methionyl-tRNA syntheta 97.5 0.00013 4.6E-09 77.4 8.2 90 132-239 266-359 (524)
28 4dlp_A Aminoacyl-tRNA syntheta 97.2 0.0011 3.8E-08 70.7 10.9 91 136-242 281-374 (536)
29 2zue_A Arginyl-tRNA synthetase 96.7 0.00066 2.3E-08 74.0 3.4 34 1-34 260-295 (629)
30 3kfl_A Methionyl-tRNA syntheta 91.7 0.22 7.5E-06 53.3 6.5 89 136-240 299-390 (564)
31 3u1f_A Methionyl-tRNA syntheta 89.6 0.59 2E-05 49.4 7.4 90 136-241 283-375 (542)
32 1rqg_A Methionyl-tRNA syntheta 88.5 0.49 1.7E-05 52.2 6.1 64 157-236 326-390 (722)
33 2cya_A Tyrosyl-tRNA synthetase 86.6 0.16 5.4E-06 51.6 0.7 52 129-180 175-244 (364)
34 1ile_A Ilers, isoleucyl-tRNA s 83.3 1.8 6.2E-05 48.3 7.3 97 132-245 545-646 (821)
35 2g36_A Tryptophanyl-tRNA synth 81.5 0.68 2.3E-05 46.5 2.7 53 129-181 151-212 (340)
36 2yy5_A Tryptophanyl-tRNA synth 80.2 0.72 2.5E-05 46.4 2.4 54 128-181 144-209 (348)
37 1wkb_A Leucyl-tRNA synthetase; 79.6 4 0.00014 45.4 8.4 91 131-237 603-697 (810)
38 2el7_A Tryptophanyl-tRNA synth 79.2 2.9 9.9E-05 41.8 6.4 52 130-181 140-202 (337)
39 1yi8_B Tryptophanyl-tRNA synth 77.9 1.2 4.1E-05 44.9 3.2 53 129-181 160-222 (351)
40 1i6k_A TRPRS, tryptophanyl-tRN 77.3 1.3 4.5E-05 44.1 3.2 54 128-181 134-199 (328)
41 1wz2_A Leucyl-tRNA synthetase; 75.3 7.3 0.00025 44.3 9.0 91 131-237 603-697 (967)
42 2ip1_A Tryptophanyl-tRNA synth 75.0 2.6 8.7E-05 43.7 4.7 64 118-181 231-302 (432)
43 1h3f_A Tyrosyl-tRNA synthetase 71.2 3.4 0.00012 42.8 4.6 53 129-181 185-239 (432)
44 2pid_A Tyrosyl-tRNA synthetase 67.4 19 0.00067 36.0 9.2 51 131-181 210-261 (356)
45 1r6t_A Tryptophanyl-tRNA synth 67.1 2.6 9E-05 44.1 2.8 52 130-181 302-356 (477)
46 2zp1_A Tyrosyl-tRNA synthetase 66.7 4.8 0.00016 39.7 4.4 46 130-179 162-209 (314)
47 2jan_A Tyrosyl-tRNA synthetase 66.2 11 0.00038 38.9 7.2 51 131-181 187-238 (432)
48 3hv0_A Tryptophanyl-tRNA synth 64.7 3 0.0001 42.7 2.5 51 131-181 219-273 (393)
49 1ffy_A Isoleucyl-tRNA syntheta 61.9 29 0.00099 39.2 10.1 88 131-236 548-640 (917)
50 3tze_A Tryptophanyl-tRNA synth 58.8 8.4 0.00029 39.5 4.6 51 130-180 242-295 (406)
51 3jxe_A Tryptophanyl-tRNA synth 58.7 6.1 0.00021 40.4 3.5 50 132-181 208-260 (392)
52 1gax_A Valrs, valyl-tRNA synth 56.4 12 0.00041 42.0 5.8 60 162-237 515-575 (862)
53 1jil_A Tyrrs, tyrosyl-tRNA syn 56.3 28 0.00096 35.7 8.1 51 131-181 186-238 (420)
54 2ts1_A Tyrosyl-tRNA synthetase 54.0 28 0.00094 35.8 7.6 51 131-181 185-237 (419)
55 3i05_A Tryptophanyl-tRNA synth 54.0 4.7 0.00016 41.2 1.8 48 132-179 225-275 (395)
56 3hzr_A Tryptophanyl-tRNA synth 52.1 12 0.0004 38.2 4.4 66 115-180 202-275 (386)
57 2j5b_A Tyrosyl-tRNA synthetase 48.9 14 0.00047 37.0 4.3 50 131-180 186-238 (348)
58 1r6u_A Tryptophanyl-tRNA synth 46.4 9 0.00031 39.6 2.5 51 131-181 256-309 (437)
59 3foc_A Tryptophanyl-tRNA synth 42.8 12 0.00042 38.8 2.9 48 134-181 290-340 (451)
60 3vgj_A Tyrosyl-tRNA synthetase 42.5 17 0.00058 36.7 3.8 52 129-180 198-253 (373)
61 3tzl_A Tryptophanyl-tRNA synth 40.4 11 0.00038 37.3 2.0 52 130-181 138-199 (322)
62 2yxn_A Tyrosyl-tRNA synthetase 32.4 26 0.00088 34.5 3.2 51 131-181 191-242 (322)
63 2cyc_A Tyrosyl-tRNA synthetase 32.2 26 0.00087 35.4 3.2 50 130-179 179-256 (375)
64 3kfl_A Methionyl-tRNA syntheta 32.1 13 0.00044 39.5 1.0 34 1-34 108-143 (564)
65 3a04_A Tryptophanyl-tRNA synth 31.0 44 0.0015 33.6 4.7 50 133-182 210-264 (372)
66 4arc_A Leucine--tRNA ligase; l 28.2 1E+02 0.0034 34.7 7.4 48 174-237 639-686 (880)
67 3p0j_A Tyrosyl-tRNA synthetase 28.1 45 0.0015 36.5 4.4 52 129-180 181-236 (690)
68 1y42_X Tyrosyl-tRNA synthetase 27.3 26 0.00089 35.6 2.2 51 131-181 232-300 (392)
69 1b0n_B Protein (SINI protein); 25.5 65 0.0022 23.7 3.5 28 197-224 16-43 (57)
70 1q08_A Zn(II)-responsive regul 21.6 72 0.0025 25.0 3.5 25 196-220 5-29 (99)
71 2v0c_A Aminoacyl-tRNA syntheta 21.6 87 0.003 35.1 5.3 48 173-236 636-683 (878)
72 3l3e_A DNA topoisomerase 2-bin 20.1 98 0.0033 24.7 4.0 29 125-153 46-74 (107)
No 1
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=1.6e-127 Score=1021.22 Aligned_cols=451 Identities=49% Similarity=0.842 Sum_probs=426.2
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC----CCCCCCCCCCChhHHHHHHHHHhCCcccC
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEE 75 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~----~~~~~~~R~~~~ee~l~~~~~m~~G~~~~ 75 (462)
|||+|| .+|+||+|+++|+++|++||++|+||+|+||++||++.|+ +|++|+||+++++|++.+|++|.+|.+.+
T Consensus 88 LGl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~ 167 (553)
T 1qtq_A 88 LGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEE 167 (553)
T ss_dssp TTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred cCCCCCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccC
Confidence 899997 7999999999999999999999999999999999999985 68999999999999999999999999888
Q ss_pred CceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHh
Q 012516 76 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 155 (462)
Q Consensus 76 ~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aL 155 (462)
|++|||+|++|.+++.+++|||++|+...+||++||+|+|+||||||||||||+|||||||||+||++||++|.|||++|
T Consensus 168 g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~al 247 (553)
T 1qtq_A 168 GKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNI 247 (553)
T ss_dssp TSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTS
T ss_pred CceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHH
Q 012516 156 GLY-QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 234 (462)
Q Consensus 156 g~~-~P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l 234 (462)
||+ .|.++||+|||++|+|||||++.++|++|.|+||||||++||++||++||+|+||++||+++|||+++..+++..|
T Consensus 248 g~~~~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~l 327 (553)
T 1qtq_A 248 TIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASL 327 (553)
T ss_dssp CCSCCCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHH
T ss_pred CCCCCCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhH
Confidence 998 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCcccc
Q 012516 235 EYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGL 314 (462)
Q Consensus 235 ~~~nr~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l 314 (462)
+.++|..|++.++|.|||+||+||.|+|+| ...+.+++|+||+ ++++|+|.++|+++||||++||++.++|+|+||
T Consensus 328 e~~~~~~l~~~~~r~~av~d~~Kl~~~N~~-~~~~~~~~p~~p~---~~~~g~r~~~~~~~i~ie~~Df~e~~~~~~~rl 403 (553)
T 1qtq_A 328 ESCIREDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHPN---KPEMGSRQVPFSGEIWIDRADFREEANKQYKRL 403 (553)
T ss_dssp HHHHHHHHHHHSCEECEESSEEEEEBTTCC-SSCEEEEEESCSS---CGGGCEEEEEECSEEEEETTTEESSCCTTCCSE
T ss_pred HHHHHhCcccccccccceeccceEEEEcCC-CceEEEEecCCCC---ChHHhhhhHhhCceEEEEHHHhhccCccccccC
Confidence 999999999999999999999999999998 4447899999998 799999999999999999999999999999999
Q ss_pred CCCCEEEEeeceeEEEEEEEecCCCCCEEEEEEEEeCCC-------CCCCceeEEeccCCCCCCCCeEEEEEeccccCCC
Q 012516 315 APGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK-------KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNS 387 (462)
Q Consensus 315 ~~g~~V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~-------~kK~k~~IhWVs~~~~~~~~v~vevr~y~~Lf~~ 387 (462)
+||++||||++|+|+|++++ +|++|+|++|+|+|++++ .+|+|++|||||+ .++++||||+||+||++
T Consensus 404 ~~g~~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~----~~~~~~~~~~yd~L~~~ 478 (553)
T 1qtq_A 404 VLGKEVRLRNAYVIKAERVE-KDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSA----AHALPVEIRLYDRLFSV 478 (553)
T ss_dssp ETTSEEEETTSCEEEEEEEE-CCSSSCCCEEEECCCSSCC-----------CEECCEES----TTCEEEEEEEECCSBSS
T ss_pred CCCCEEEeccEEEEEEEEEE-EcCCCCEEEEEEEEecccccCCCccccccCCEEEEeec----CCCEeEEEEecccccCC
Confidence 99999999999999999999 899999999999999863 3788999999998 67899999999999999
Q ss_pred CCCCCcccccccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEec-CCCCCceEEEeecCCCCCCCCCC
Q 012516 388 ENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 461 (462)
Q Consensus 388 ~~p~~~~~~~~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~-~~~~~~lVfn~~v~Lk~~~~~~~ 461 (462)
++|++.++|+++|||+|+.+. .|++|++++++++|++|||||+|||+||+ +++++++||||||+||++|+|..
T Consensus 479 ~~p~~~~~~~~~~np~s~~~~-~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~vfnr~v~l~~~~~~~~ 552 (553)
T 1qtq_A 479 PNPGAADDFLSVINPESLVIK-QGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVG 552 (553)
T ss_dssp SCGGGSTTGGGGBCTTSEEEE-EEEECGGGGGCCTTCEEEETTTEEEESCTTTCCSSSCEEEEEEECCCC-----
T ss_pred CCCCcCcchhhhcCCcchhhe-eeEecHhHhhCCCCCEEEEEEeeEEEECcCCCCCCCeeEEeEEEcccchhhhc
Confidence 999866899999999999987 78999999999999999999999999997 78889999999999999999853
No 2
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=2.3e-123 Score=1025.68 Aligned_cols=448 Identities=40% Similarity=0.705 Sum_probs=422.7
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC----CCCCCCCCCCChhHHHHHHHHHhCCcccC
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEE 75 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~----~~~~~~~R~~~~ee~l~~~~~m~~G~~~~ 75 (462)
|||+|| .+||||+|+++|+++|++||++|+||+|+||++||++.|+ +|++|+||++++++++.+|++|.+|.+.+
T Consensus 128 LGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~ 207 (851)
T 2hz7_A 128 LGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFAD 207 (851)
T ss_dssp HTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred cCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCccc
Confidence 799997 7999999999999999999999999999999999999886 58899999999999999999999999999
Q ss_pred CceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHh
Q 012516 76 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 155 (462)
Q Consensus 76 ~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aL 155 (462)
+++|||+|++|.+++.+++|||+||++..+||++|++|+||||||||||||||+|||||||||+||++||++|.|||++|
T Consensus 208 g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~al 287 (851)
T 2hz7_A 208 GEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKL 287 (851)
T ss_dssp TSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHT
T ss_pred CCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CeEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHH
Q 012516 156 GLYQ-PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 234 (462)
Q Consensus 156 g~~~-P~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l 234 (462)
||+. |.++||+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++|||+++..+++..|
T Consensus 288 G~~~~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~l 367 (851)
T 2hz7_A 288 NFDPRPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVY 367 (851)
T ss_dssp TCSSCCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHH
T ss_pred CCCCCCCceEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHH
Confidence 9996 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCC-------------------CCCCeEEEeecce
Q 012516 235 EYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQAD-------------------DASAFYKVPFSNV 295 (462)
Q Consensus 235 ~~~nr~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~-------------------~~~G~r~v~~~~~ 295 (462)
+.+||..|++.++|+|||+||+||.|.|+|+.. ++++|+||+ + |++|+|+|+|+++
T Consensus 368 e~~~r~~l~~~~~r~~av~d~~Kl~~~N~~~~~--~~~~p~~p~---~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~~~ 442 (851)
T 2hz7_A 368 ENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEK--TLSLPYWPH---DVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRE 442 (851)
T ss_dssp HHHHHHHHHTTCCEECEESSEEEEEETTCCSCE--EEEEESSCH---HHHHTCTTSCEECSSSCEECGGGCEEEEEECSE
T ss_pred HHHHHhcccccccccceEecceeEEEecCCCCe--EEEecCCcc---cccccccccccccccccccCccCceEEEEEcCe
Confidence 999999999999999999999999999999874 889999998 6 8999999999999
Q ss_pred EEEecCcccccCCcCccccCCCCEEEEeeceeEEEEEEEecCCCCCEEEEEEEEeCCCCCCCceeEEeccCCCCCCCCeE
Q 012516 296 VYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLR 375 (462)
Q Consensus 296 i~Ie~~D~~~~~~~~f~~l~~g~~V~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~~kK~k~~IhWVs~~~~~~~~v~ 375 (462)
||||++||++.++++|+||+||++|||+++|+|+|++++ +|++|+|++|+|+|.++. +|+|++|||||+ .++++
T Consensus 443 iyie~~Df~e~~~~~~~rl~~g~~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~-~k~k~~ihWv~~----~~~~~ 516 (851)
T 2hz7_A 443 LYIERDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADDFG-TDEAGQVTHIRATLLGED-AKAAGVIHWVSA----ERALP 516 (851)
T ss_dssp EEEEGGGBCSSCCTTCCSBCTTCEEEETTTEEEEEEEEE-ECTTSCEEEEEEEECCTT-CCCSCEECCEET----TTCEE
T ss_pred EEEEHHHhhhcccccceecCCCCEEEecCeEEEEEEEEE-ecCCCCEEEEEEEEcccC-CccCceEEEeec----CCCee
Confidence 999999999999999999999999999999999999999 899999999999997554 789999999998 67899
Q ss_pred EEEEeccccCCCCCCCC----------------------------cccccccCCCCCceeecceEeccccccCCCCCeEE
Q 012516 376 VEVRLFEKLFNSENPAE----------------------------LDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQ 427 (462)
Q Consensus 376 vevr~y~~Lf~~~~p~~----------------------------~~~~~~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQ 427 (462)
||||+||+||++++|++ +++|+++|||+|+.+. .|++||+++++++|++||
T Consensus 517 ~e~r~yd~Lf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~-~~~~e~~~~~~~~~~~~Q 595 (851)
T 2hz7_A 517 AEFRLYDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVL-RGYVEPSVAGDPADTRYQ 595 (851)
T ss_dssp EEEEEECCSBSSSCTTCCC----------------------------CGGGGBCTTSEEEE-EEEECGGGGGSCTTCEEE
T ss_pred EEEEecccccCCCCcccccccccccccccccccccccccccccccCccHHHhcCCccceee-eeEEchhhhhCCCCCEEE
Confidence 99999999999999975 3689999999999988 789999999999999999
Q ss_pred EEEeeeEEEec------CCCCCceEEEeecCCCCCCCCC
Q 012516 428 FERLGYFAVDK------DSTPEKLVFNRTVTLKDSFPKG 460 (462)
Q Consensus 428 FER~Gyf~vD~------~~~~~~lVfn~~v~Lk~~~~~~ 460 (462)
|||+|||+||+ +++++++||||||+||++|+|+
T Consensus 596 feR~Gyf~~D~~~~~~~~~~~~~~vfnr~v~lk~~~~~~ 634 (851)
T 2hz7_A 596 FERQGYFWRDPVELERVDSREDALVFGRIITLKDTWGKQ 634 (851)
T ss_dssp ETTTEEEEECHHHHHCC------CEEEEEECSSCCC---
T ss_pred EEEeeEEEEccCCCccCCCCCCceEEEeecccccchhhc
Confidence 99999999996 8888999999999999999983
No 3
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.3e-105 Score=853.13 Aligned_cols=387 Identities=25% Similarity=0.393 Sum_probs=349.5
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
||++||++++||+|++.|+++|++||++|+||+|+||+++|++.|+.|++|+||++++++++++|++|.+| .+|++||
T Consensus 158 LGl~wd~~~~qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~l 235 (553)
T 3aii_A 158 LGVEWDETVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGSAVV 235 (553)
T ss_dssp HTCCCSEEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEE
T ss_pred cCCCCCCCcccccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC--CcCceEE
Confidence 79999999999999999999999999999999999999999999998999999999999999999999999 4578999
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCCCC
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 160 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P 160 (462)
|+|+||.++|.+++|||+||+...+||++||+|+||||||||||||||+|||||||||.||++||++|.||+++|||+.|
T Consensus 236 R~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P 315 (553)
T 3aii_A 236 RVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPP 315 (553)
T ss_dssp EECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCC
T ss_pred EEEcccccCCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCC
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHHH
Q 012516 161 YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240 (462)
Q Consensus 161 ~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~ 240 (462)
.|+|+++|+++|+|||||+++++|++|.|+||||||++||++||++||+|+||++||+++|+|+++..|+++.|+++||+
T Consensus 316 ~y~H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~ 395 (553)
T 3aii_A 316 EFIHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRS 395 (553)
T ss_dssp EEECCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHH
T ss_pred eEEEeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcceeeecceEEEEEecCCCeEEEEEeecCCCCCCCCCCCeEEEeecceEEEecCcccccCCcCccccCCCCEE
Q 012516 241 ELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSV 320 (462)
Q Consensus 241 ~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~p~~~k~~~~G~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~V 320 (462)
+|++.++|+|||+||++|+|+|+|.. +++++|+||+ +|++|+|+++|+++||||++||+ + ++|
T Consensus 396 ~l~~~a~R~~~V~~p~kv~i~n~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~ie~~D~~-----------~-~~v 458 (553)
T 3aii_A 396 ILEEEARRYFFAADPVKLEVVGLPGP--VRVERPLHPD---HPEIGNRVLELRGEVYLPGDDLG-----------E-GPL 458 (553)
T ss_dssp HHTTTCEEECEEESEEEEEEETCCSC--EEEEEESCTT---CGGGCEEEEEESSEEEEECTTCC-----------S-EEE
T ss_pred HhhccChhhhhccCcEEEEEeCCCCc--eEEEecCCCC---CCcCccEEEEECCEEEEEcccCC-----------c-Cce
Confidence 99999999999999999999999842 6899999999 79999999999999999999985 5 789
Q ss_pred EEeeceeEEEEEEEecCCCCCEEEEEEEEeCCC---CCCCc-eeEEeccCCCCCCCCeEEEEEeccccCCCCCCCCcccc
Q 012516 321 LLRYAFPIKCTEVILSDDKETILHIRAEYDPSK---KTKPK-GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDW 396 (462)
Q Consensus 321 ~Lk~~~~i~~~~~~~~d~~g~v~~l~~~~~~~~---~kK~k-~~IhWVs~~~~~~~~v~vevr~y~~Lf~~~~p~~~~~~ 396 (462)
||+++|||+|+++. |+|++++ .+|+| ++|||||+ .++++|+|+.+ ++
T Consensus 459 rL~~~~~i~~~~~~------------~~~~~~~~~~~~k~k~~~i~Wv~~----~~~~~~~~~~~---------~~---- 509 (553)
T 3aii_A 459 RLIDAVNVIYSGGE------------LRYHSEGIEEARELGASMIHWVPA----ESALEAEVIMP---------DA---- 509 (553)
T ss_dssp EETTTEEEEEETTE------------EEEEECSHHHHHHHTCEEECCEEG----GGCEEEEEECT---------TS----
T ss_pred eecCEEEEEEEEEE------------EEEeCCchhhcccCCCCEEEEccC----CCceEEEEECC---------CC----
Confidence 99999999998642 7787754 25677 89999998 57899999843 21
Q ss_pred cccCCCCCceeecceEeccccccCCCCCeEEEEEeeeEEEecCCCCCceEE
Q 012516 397 LSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 447 (462)
Q Consensus 397 ~~~iN~~S~~~~~~~~~E~~~~~~k~g~~iQFER~Gyf~vD~~~~~~~lVf 447 (462)
. +. .|++||+++++++|++|||||+|||+||+.+++ +||
T Consensus 510 --------~-~~-~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~--~~~ 548 (553)
T 3aii_A 510 --------S-RV-RGVIEADASELEVDDVVQLERFGFARLDSAGPG--MVF 548 (553)
T ss_dssp --------C-EE-EEEECGGGGGCCTTCEEEETTTEEEEEEECSSS--EEE
T ss_pred --------c-EE-EEEEchhHhcCCCCCEEEEEEeEEEEEeeCCCc--EEE
Confidence 1 33 689999999999999999999999999987544 554
No 4
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=8.5e-56 Score=472.40 Aligned_cols=224 Identities=19% Similarity=0.227 Sum_probs=199.1
Q ss_pred CCcccCC---------ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCCCCCCChhHHHH
Q 012516 1 MGWEPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLK 63 (462)
Q Consensus 1 LGl~wD~---------~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~~R~~~~ee~l~ 63 (462)
|||+||+ ||+||+|+++|+++|++|+++|+||+|+||++|+++.|+ ++|++.||+++.++...
T Consensus 86 lGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~ 165 (512)
T 4gri_A 86 LGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVEN 165 (512)
T ss_dssp HTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHH
T ss_pred cCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhh
Confidence 6999995 689999999999999999999999999999999998765 57899999999876433
Q ss_pred HHHHHhCCcccCCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCc----cccccccceeeeeecCCCccceEeecc
Q 012516 64 LFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTL 139 (462)
Q Consensus 64 ~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~----~~~~PtY~fA~~VDD~l~gITHviRg~ 139 (462)
.+. +++++++|+|+++. .+..++|+|.+|+....|...||. +.++||||||||||||+|||||||||+
T Consensus 166 ---~~~----~~~~~~~R~k~~~~-~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~ 237 (512)
T 4gri_A 166 ---ALI----KKIKPVVRFKIPLE-GDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQ 237 (512)
T ss_dssp ---HHH----TTCCCEEEECCCSS-CEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEG
T ss_pred ---hhh----hhccceeeeccccc-CCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceecccc
Confidence 222 34689999999985 577899999999988777777774 457999999999999999999999999
Q ss_pred ccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHH
Q 012516 140 EFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 218 (462)
Q Consensus 140 e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~ 218 (462)
||++|||+|+|||++|||++|.|+|+|. ++.+|+|||||+++. +|..||+.||+|+||.|||+
T Consensus 238 D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g~kLSKR~~~~----------------~v~~~~~~G~lPeAl~NyLa 301 (512)
T 4gri_A 238 EWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKLSKRHGST----------------ALRQFIEDGYLPEAIINYVT 301 (512)
T ss_dssp GGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSSBCCTTTSCC----------------BHHHHHHHTCCHHHHHHHHH
T ss_pred ccccccHHHHHHHHHcCCCCCeEEecchhccccccccCcccccc----------------cHHHHHHcCCChHHHHHHHH
Confidence 9999999999999999999999999996 688999999999754 58899999999999999999
Q ss_pred HcCcc-----------------------CCCccccHHHHHHHHHHhhhccCCc
Q 012516 219 GIGIS-----------------------RSDSLIRLDRLEYHIREELNKTAPR 248 (462)
Q Consensus 219 ~lG~s-----------------------~~~~~~~~~~l~~~nr~~l~~~~~r 248 (462)
+|||| ++++.||++||+|+|+++|...+..
T Consensus 302 lLGws~~~~~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~~~N~~~i~~~~~~ 354 (512)
T 4gri_A 302 LLGWSYDDKREFFSKNDLEQFFSIEKINKSPAIFDYHKLDFFNSYYIREKKDE 354 (512)
T ss_dssp HSSBCSSSSCCCCCHHHHHHHCCGGGBCSSCCBCCHHHHHHHHHHHHHHSCHH
T ss_pred HhCCCCcccchhhhHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHhCCHH
Confidence 99975 6788999999999999999887643
No 5
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=1.1e-55 Score=465.94 Aligned_cols=211 Identities=20% Similarity=0.280 Sum_probs=175.3
Q ss_pred CCcccCC-ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCCCCCCChhHHHHHHHHHhCC
Q 012516 1 MGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNG 71 (462)
Q Consensus 1 LGl~wD~-~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~~R~~~~ee~l~~~~~m~~G 71 (462)
|||+||+ +|+||+|+++|++++++|+++|+||+||||++||++.|+ ++|+++||+++.++. ..
T Consensus 87 lGl~~d~~~~~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~--------~~ 158 (490)
T 4g6z_A 87 LGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL--------PE 158 (490)
T ss_dssp TTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC--------CC
T ss_pred cCCCCCCCCcccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh--------hh
Confidence 7999995 899999999999999999999999999999999998775 469999999986431 11
Q ss_pred cccCCceEEEEeec--------------CCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEee
Q 012516 72 RIEEGKATLRMKQD--------------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLC 137 (462)
Q Consensus 72 ~~~~~~~~lR~K~d--------------~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviR 137 (462)
..++.++++|+|++ +..+|..++||||+|++ ++||||||||||||+||||||||
T Consensus 159 ~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~D------------G~ptY~lA~vVDD~~mgIThViR 226 (490)
T 4g6z_A 159 PPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARPD------------GTPMYNFCVVVDDLDMGITHVIR 226 (490)
T ss_dssp CCTTCCCEEEECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECTT------------SCBCHHHHHHHHHHHTTCCEEEE
T ss_pred hhcCCCceEEEecCCCCcEEEEEeeeeeeeeccccCCCeEEEeeC------------CCccchhHHHHHHHhcCCCEEEe
Confidence 22335789999875 23456789999999986 59999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHH
Q 012516 138 TLEFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAF 216 (462)
Q Consensus 138 g~e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f 216 (462)
|+||++|||+|++||++|||++|.|+|+|. ++.+|+|||||+++ .||++||++||+|+||+||
T Consensus 227 G~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g~KLSKR~g~----------------~sl~~~r~~G~~peal~n~ 290 (490)
T 4g6z_A 227 GDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQGEKMSKRHGA----------------MSVMGYRDAGYLPEAVLNY 290 (490)
T ss_dssp EGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTSSBCCTTTTC----------------CBHHHHHHTTCCHHHHHHH
T ss_pred ccccccChHHHHHHHHHcCCCCCeEEEecceeCCCCCcccCCCCC----------------cCHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999999999996 68999999999963 4799999999999999999
Q ss_pred HHHcCcc----------------------CCCccccHHHHHHHHHHhhhccCC
Q 012516 217 VQGIGIS----------------------RSDSLIRLDRLEYHIREELNKTAP 247 (462)
Q Consensus 217 ~~~lG~s----------------------~~~~~~~~~~l~~~nr~~l~~~~~ 247 (462)
|+.|||| ++++.||++||+|+|+++|...+.
T Consensus 291 l~~lG~s~~~~e~~s~~eli~~F~~~~~~~~~~~fd~~KL~~~N~~~i~~~~~ 343 (490)
T 4g6z_A 291 LARLGWSHGDAEIFTREQFVEWFDLEHLGKSPAQYDHNKLNWLNNHYIKEADD 343 (490)
T ss_dssp HHTSSBCCTTCCCCCHHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCH
T ss_pred HHHhCCCCCCccccCHHHHHhhCCHhhCCCCCCccCHHHHHHHHHHHHHhCCH
Confidence 9999986 456678888888888888877653
No 6
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=2e-54 Score=458.35 Aligned_cols=221 Identities=19% Similarity=0.204 Sum_probs=187.0
Q ss_pred CCcccCC---------ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHh---C----CCCCCCCCCCChhHHHHH
Q 012516 1 MGWEPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR---E----KKMNSPWRDRPIAESLKL 64 (462)
Q Consensus 1 LGl~wD~---------~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r---~----~~~~~~~R~~~~ee~l~~ 64 (462)
|||+||+ ||+||+|+++|+++|++|+++|+||+|+||++||++.| . ++|+++||+++++|+.+.
T Consensus 68 lGl~wDegp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~ 147 (498)
T 2ja2_A 68 LGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAY 147 (498)
T ss_dssp HTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHH
T ss_pred cCCCcCCCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhh
Confidence 6999997 89999999999999999999999999999999999886 2 579999999999988763
Q ss_pred HHHHhCCcccCCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccc-----cccccceeeeeecCCCccceEeecc
Q 012516 65 FEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC-----IYPSYDYAHCIVDSIENITHSLCTL 139 (462)
Q Consensus 65 ~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~-----~~PtY~fA~~VDD~l~gITHviRg~ 139 (462)
..+| .++|+|+|++ ..+..+.|.|.+++....+. .+ +|+ ++||||||||||||+|||||||||+
T Consensus 148 ---~~~g----~~~~iR~k~~--~~~~~~~D~v~G~i~~~~~~-~~-D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~ 216 (498)
T 2ja2_A 148 ---LAEG----RQPVVRLRMP--DDDLAWNDLVRGPVTFAAGS-VP-DFALTRASGDPLYTLVNPCDDALMKITHVLRGE 216 (498)
T ss_dssp ---HHTT----CCCEEEECCC--SSCEEEEETTTEEEEECTTC-SC-CCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEG
T ss_pred ---hccC----CCceEEEECC--CCceEEEecccceEeecccc-cC-cceeEccCCCcchhhHHHHHhhhcCCCEEEECh
Confidence 2334 4789999997 33444555555554443321 12 232 6999999999999999999999999
Q ss_pred ccccccHHHHHHHHHh-----CCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHH
Q 012516 140 EFETRRASYFWLLHAL-----GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSI 213 (462)
Q Consensus 140 e~l~~t~~q~~l~~aL-----g~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi 213 (462)
||++|||+|++||++| ||++|.|.|++. ++.+|+|||||+++. +|++||++||+|+||
T Consensus 217 D~~~~t~~q~~l~~aL~~~g~g~~~P~~~h~plil~~~g~KLSKR~g~~----------------~l~~~r~~G~~peAl 280 (498)
T 2ja2_A 217 DLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQS----------------NLFAHRDRGFIPEGL 280 (498)
T ss_dssp GGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGGG----------------BHHHHHHHTCCHHHH
T ss_pred hhhhccHHHHHHHHHHHhhcCCCCCCeEEEeeeeECCCCCcccccCCcc----------------cHHHHHhCCCCHHHH
Confidence 9999999999999999 999999999997 699999999999743 689999999999999
Q ss_pred HHHHHHcCccC-----------------------CCccccHHHHHHHHHHhhhccCCc
Q 012516 214 NAFVQGIGISR-----------------------SDSLIRLDRLEYHIREELNKTAPR 248 (462)
Q Consensus 214 ~~f~~~lG~s~-----------------------~~~~~~~~~l~~~nr~~l~~~~~r 248 (462)
+|||+.||||. +++.||++||+|+|+++|+..++.
T Consensus 281 ~~~l~~lG~s~~~~~e~~s~~eli~~f~~~~~~~~~a~fd~~kL~~~N~~~i~~~~~~ 338 (498)
T 2ja2_A 281 LNYLALLGWSIADDHDLFGLDEMVAAFDVADVNSSPARFDQKKADALNAEHIRMLDVG 338 (498)
T ss_dssp HHHHHTSSCCSCSSCCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHhCCCCCcccccCCHHHHHhhCChhhcCccccccCHHHHHHhhHHHHHhcCHH
Confidence 99999999985 345788888989998888877644
No 7
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=2.7e-54 Score=455.20 Aligned_cols=223 Identities=23% Similarity=0.320 Sum_probs=196.4
Q ss_pred CCcccCC-c--------eecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--CCCCCCCCCCChhHHHHHHHHHh
Q 012516 1 MGWEPFK-I--------TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--KKMNSPWRDRPIAESLKLFEDMR 69 (462)
Q Consensus 1 LGl~wD~-~--------~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--~~~~~~~R~~~~ee~l~~~~~m~ 69 (462)
|||+||+ | |+||+|+++|+++|++|+++|+||+|+||++||++.|+ .+|+++||+++++|+++ +|.
T Consensus 63 lGl~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~---~~~ 139 (468)
T 1j09_A 63 LGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE---RAR 139 (468)
T ss_dssp TTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHH---HHH
T ss_pred cCCCCCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHH---HHh
Confidence 7999995 3 99999999999999999999999999999999998875 37999999999998876 476
Q ss_pred CCcccCCceEEEEeec--------------CCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceE
Q 012516 70 NGRIEEGKATLRMKQD--------------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS 135 (462)
Q Consensus 70 ~G~~~~~~~~lR~K~d--------------~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHv 135 (462)
+|. ++++|+|++ +..++..++||||+|++ ++||||||||||||+||||||
T Consensus 140 ~g~----~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~d------------g~PtY~~a~vvDD~~~githv 203 (468)
T 1j09_A 140 RGE----PHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSD------------GYPTYHLANVVDDHLMGVTDV 203 (468)
T ss_dssp TTC----CCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECTT------------SCBCHHHHHHHHHHHTTCCEE
T ss_pred cCC----CceEEEecCCCCceEEEeccceeEeecccCCCCeEEEecC------------CCeeehhHHHHHHHHCCCCeE
Confidence 663 789999997 44556778999999976 699999999999999999999
Q ss_pred eeccccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHH
Q 012516 136 LCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSIN 214 (462)
Q Consensus 136 iRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~ 214 (462)
|||+||++|||+|.|||++|||++|.|.|++. +|.+|+|||||+++. +|++||++||+|+||+
T Consensus 204 irG~D~~~~t~~q~~l~~alg~~~p~~~h~~li~~~~g~klSKR~g~~----------------~l~~~~~~G~~peal~ 267 (468)
T 1j09_A 204 IRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTKISKRKSHT----------------SLDWYKAEGFLPEALR 267 (468)
T ss_dssp EEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSCBCCTTTSCC----------------BHHHHHHTTCCHHHHH
T ss_pred EEChhhhhhHHHHHHHHHHcCCCCCeEEEeeeeeCCCCCccccccchh----------------hHHHHHHCCCCHHHHH
Confidence 99999999999999999999999999999997 699999999999743 5899999999999999
Q ss_pred HHHHHcCccCCC--ccccH-HHHHHHHHHhhhccCCcceeeecceEEEEEe
Q 012516 215 AFVQGIGISRSD--SLIRL-DRLEYHIREELNKTAPRTMVVLNPLKVVITN 262 (462)
Q Consensus 215 ~f~~~lG~s~~~--~~~~~-~~l~~~nr~~l~~~~~r~~~v~~p~~~~i~n 262 (462)
|||+.||||..+ ..+++ +.+++|+.+.|.+. .+++||.||.+.|
T Consensus 268 ~~l~~lG~~~~~~~~~~~~~el~~~f~~~~~~~~----~~~~d~~kl~~~N 314 (468)
T 1j09_A 268 NYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLG----GPVFDLEKLRWMN 314 (468)
T ss_dssp HHHHHHSCCCTTCCSCCCHHHHHHHCCGGGCCCS----CCBCCHHHHHHHH
T ss_pred HHHHHhccCCcccccCCCHHHHHhhCChhhcCcc----ccccChHHhhhhc
Confidence 999999999765 35676 44567776666544 4778888888887
No 8
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=5.7e-54 Score=455.21 Aligned_cols=194 Identities=21% Similarity=0.233 Sum_probs=175.4
Q ss_pred CCcccCC-ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCCCCCCChhHHHHHHHHHhCC
Q 012516 1 MGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNG 71 (462)
Q Consensus 1 LGl~wD~-~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~~R~~~~ee~l~~~~~m~~G 71 (462)
|||+||+ +|+||+|+++|+++|++|+++|+||+||||++||++.|+ ++|+++||+++.+++++ +|.+|
T Consensus 63 LGl~wde~~~~QS~r~~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~---~~~~g 139 (492)
T 2cfo_A 63 LGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAA---FEAAG 139 (492)
T ss_dssp TTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHH---HHHTT
T ss_pred cCCCCCCCCccccCCHHHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHH---HHhCC
Confidence 7999995 999999999999999999999999999999999998763 47999999999998764 57777
Q ss_pred cccCCceEEEEeecC--------------CCCCCcC-CCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEe
Q 012516 72 RIEEGKATLRMKQDM--------------QNDNFNM-YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSL 136 (462)
Q Consensus 72 ~~~~~~~~lR~K~d~--------------~~~n~~~-~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHvi 136 (462)
. ++|+|+|++. ..++..+ +||||+|++. +| |+++||||||||||||+|||||||
T Consensus 140 ~----~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~--~p-----~~G~PtY~la~vvDD~~~gIthvi 208 (492)
T 2cfo_A 140 R----TPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP--RG-----EIGYPLYNLVVVVDDIAMGITDVI 208 (492)
T ss_dssp C----CCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC--TT-----SCCCBCHHHHHHHHHHHTTCSEEE
T ss_pred C----CceEEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC--CC-----CCCceeehhhhhhhhhcCCCCeEE
Confidence 4 7899999974 2356678 9999999874 33 346999999999999999999999
Q ss_pred eccccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHH
Q 012516 137 CTLEFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 215 (462)
Q Consensus 137 Rg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~ 215 (462)
||+||++|||+|++||++|||++|.|+|+|. |+.+|+|||||+++. +|++||++||+|+||+|
T Consensus 209 RG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g~KLSKr~g~~----------------~l~~~r~~G~~peal~~ 272 (492)
T 2cfo_A 209 RGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTGQKLSKRDGVT----------------SISDFRAMGYLAPALAN 272 (492)
T ss_dssp EEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSSSBCCTTSSCC----------------BHHHHHHTTCCHHHHHH
T ss_pred EchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCCCEecccCCcc----------------cHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999999999997 799999999999743 58999999999999999
Q ss_pred HHHHcCccC
Q 012516 216 FVQGIGISR 224 (462)
Q Consensus 216 f~~~lG~s~ 224 (462)
||+.||||.
T Consensus 273 ~l~~lG~s~ 281 (492)
T 2cfo_A 273 YMTLLGWSP 281 (492)
T ss_dssp HHHHTTBCC
T ss_pred HHHHhCCCC
Confidence 999999986
No 9
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=6.3e-51 Score=431.29 Aligned_cols=203 Identities=19% Similarity=0.262 Sum_probs=173.0
Q ss_pred CCcccCC---------ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCC
Q 012516 1 MGWEPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 71 (462)
Q Consensus 1 LGl~wD~---------~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G 71 (462)
|||+||+ ||+||+|+++|+++|++|+++|+||+|+||++||++.+.+.|++. + +.+.+|
T Consensus 87 lGl~wDe~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~------~------~~~~~G 154 (488)
T 3afh_A 87 CGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKG 154 (488)
T ss_dssp TTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC------H------HHHHTT
T ss_pred cCCCCCcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCch------h------hHHhcC
Confidence 7999996 599999999999999999999999999999999987644556554 1 234455
Q ss_pred cccCCceEEEEeec-------------CCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeec
Q 012516 72 RIEEGKATLRMKQD-------------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCT 138 (462)
Q Consensus 72 ~~~~~~~~lR~K~d-------------~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg 138 (462)
.++++|+|++ +..++..++|+||+|++ ++||||||||||||+|||||||||
T Consensus 155 ----~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~D------------G~PtY~lA~vVDD~~mgIThViRG 218 (488)
T 3afh_A 155 ----HPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSN------------GFPTYNFAVVVDDHLMRISHVFRG 218 (488)
T ss_dssp ----CCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEECTT------------SCBCHHHHHHHHHHHTTCSEEEEE
T ss_pred ----CCceEEEECCCCceeEEeccceeEeecCCCCCCeEEEecC------------CCeehhhHHHHHHHhcCCCEEEEc
Confidence 3789999987 22344667899999976 699999999999999999999999
Q ss_pred cccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHH
Q 012516 139 LEFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 217 (462)
Q Consensus 139 ~e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~ 217 (462)
+||++|||+|++||++|||++|.|.|+|. ++.+|+|||||+++. +|++||++||+||||+|||
T Consensus 219 ~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g~KLSKR~g~~----------------~l~~~r~~G~~peal~n~l 282 (488)
T 3afh_A 219 EDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKRHGAT----------------SVEHFRREGILSRALMNYL 282 (488)
T ss_dssp GGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTSSBCCTTTSCC----------------BHHHHHHHTCCHHHHHHHH
T ss_pred hhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCCCcccCcCCcc----------------cHHHHHHCCCCHHHHHHHH
Confidence 99999999999999999999999999997 599999999999753 5899999999999999999
Q ss_pred HHcCccCC----------------------CccccHHHHHHHHHHhhhccCC
Q 012516 218 QGIGISRS----------------------DSLIRLDRLEYHIREELNKTAP 247 (462)
Q Consensus 218 ~~lG~s~~----------------------~~~~~~~~l~~~nr~~l~~~~~ 247 (462)
+.||||.. ++.||++||+|+|+++|...++
T Consensus 283 ~~lG~s~~~~e~~s~~e~i~~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~ 334 (488)
T 3afh_A 283 ALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEWVNGKHMRRIDL 334 (488)
T ss_dssp HHTTCCCSSCSCCCHHHHGGGCCGGGSCSSCEECCHHHHHHHHHHHHHHSCH
T ss_pred HHhCCCCcccccCCHHHHHhhCChhhcCccccccChHHhhhccHHHHhcCCH
Confidence 99999853 2456777777777777766543
No 10
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-49 Score=420.48 Aligned_cols=213 Identities=19% Similarity=0.194 Sum_probs=187.6
Q ss_pred CCcccCC---------ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhC--------CCCCCC--CCCCChhHH
Q 012516 1 MGWEPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSP--WRDRPIAES 61 (462)
Q Consensus 1 LGl~wD~---------~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~--------~~~~~~--~R~~~~ee~ 61 (462)
||++||+ +|+||+|+++|+++|++|+++|+||+|+||+++|++.|+ +.|++. ||+++.+|+
T Consensus 75 lGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~ 154 (481)
T 2o5r_A 75 LGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERR 154 (481)
T ss_dssp HTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHH
T ss_pred cCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHH
Confidence 6999995 599999999999999999999999999999999988764 368988 999999987
Q ss_pred HHHHHHHhCCcccCCceEEEEeecC-------------CCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecC
Q 012516 62 LKLFEDMRNGRIEEGKATLRMKQDM-------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS 128 (462)
Q Consensus 62 l~~~~~m~~G~~~~~~~~lR~K~d~-------------~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~ 128 (462)
.+ +|.+|. ++++|+|++. ...+..++|+||+|++ ++||||||||||||
T Consensus 155 ~~---~~~~G~----~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsD------------G~ptY~~a~vvDD~ 215 (481)
T 2o5r_A 155 RE---YEEKGL----RPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSN------------GLPTYNFACVVDDM 215 (481)
T ss_dssp HH---HHHTTC----CCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECTT------------SCBCHHHHHHHHHH
T ss_pred HH---HHhcCC----cceEEEEcCCCceEEEecccceeEeccccCCCeEEEccC------------CCcchhhHHHHHHH
Confidence 65 577774 6899999862 2356678999999986 69999999999999
Q ss_pred CCccceEeeccccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcC
Q 012516 129 IENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 207 (462)
Q Consensus 129 l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG 207 (462)
+|||||||||+||++|||+|.+||++|||++|.|.|++. ++.+|+|||||+++. +|++||++|
T Consensus 216 ~~githvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G~KLSKR~g~~----------------~l~~~~~~G 279 (481)
T 2o5r_A 216 LMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGAT----------------SVEAFRDMG 279 (481)
T ss_dssp HTTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTSSBCCGGGSCC----------------BHHHHHHHT
T ss_pred hCCCCeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCCCcccCcCCcc----------------cHHHHHHCC
Confidence 999999999999999999999999999999999999996 799999999999743 589999999
Q ss_pred CCHHHHHHHHHHcCccC-----------------------CCccccHHHHHHHHHHhhhccCCc
Q 012516 208 VTSTSINAFVQGIGISR-----------------------SDSLIRLDRLEYHIREELNKTAPR 248 (462)
Q Consensus 208 ~~peAi~~f~~~lG~s~-----------------------~~~~~~~~~l~~~nr~~l~~~~~r 248 (462)
|+|+||+||++.|||+. +++.||++||+++|.++|...++.
T Consensus 280 ~~peal~~~l~~lG~s~~~~~e~~~~~e~i~~f~l~~~~~~~~~fd~~kl~~~n~~~i~~~~~~ 343 (481)
T 2o5r_A 280 YLPEALVNYLALLGWSHPEGKELLTLEELISSFSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIE 343 (481)
T ss_dssp CCHHHHHHHHHTSSBCCTTCCCCCCHHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHH
T ss_pred CCHHHHHHHHHHhCCCCCcccccCCHHHHHHhCChhhCCccCcccChHHhhhhCHHHHHhcCHH
Confidence 99999999999999975 334678888888888888776543
No 11
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-49 Score=425.74 Aligned_cols=203 Identities=19% Similarity=0.261 Sum_probs=176.8
Q ss_pred CCcccCC---------ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCC
Q 012516 1 MGWEPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 71 (462)
Q Consensus 1 LGl~wD~---------~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G 71 (462)
|||+||+ ||+||+|+++|+++|++|+++|+||+|+||++||++.+.+.|++. + +.+..|
T Consensus 191 lGl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~------~------~~~~~g 258 (592)
T 3al0_C 191 CGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKG 258 (592)
T ss_dssp TTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCC------H------HHHHTT
T ss_pred cCCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcH------H------HHhhcC
Confidence 7999996 599999999999999999999999999999999987744555544 1 235555
Q ss_pred cccCCceEEEEeec-------------CCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeec
Q 012516 72 RIEEGKATLRMKQD-------------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCT 138 (462)
Q Consensus 72 ~~~~~~~~lR~K~d-------------~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg 138 (462)
.++++|+|++ +..++..++|+||+|++ ++||||||||||||+|||||||||
T Consensus 259 ----~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~d------------g~ptY~~a~vvDD~~~githvirG 322 (592)
T 3al0_C 259 ----HPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSN------------GFPTYNFAVVVDDHLMRISHVFRG 322 (592)
T ss_dssp ----CCEEEEECCCSSCCEECCTTTCSEECCSSSSCCEEEECTT------------SCCCHHHHHHHHHHHTTCSBCCEE
T ss_pred ----CCceEEEECCCCCceeeecccceeeeccccCCCeEEEcCC------------CCeehhhHHHHHHHhcCCCeEEEc
Confidence 3789999997 34456778999999976 699999999999999999999999
Q ss_pred cccccccHHHHHHHHHhCCCCCeEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHH
Q 012516 139 LEFETRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 217 (462)
Q Consensus 139 ~e~l~~t~~q~~l~~aLg~~~P~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~ 217 (462)
+||++|||+|+|||++|||++|.|.|+|. ++.+|+|||||+++. +|++||++||+|+||+|||
T Consensus 323 ~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g~KLSKR~g~~----------------~l~~~~~~G~~peal~~~l 386 (592)
T 3al0_C 323 EDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKRHGAT----------------SVEHFRREGILSRALMNYL 386 (592)
T ss_dssp GGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTSSBCCTTTCSS----------------BHHHHHHTTCCHHHHHHHH
T ss_pred hhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCCCcccccCCcc----------------cHHHHHHCCCCHHHHHHHH
Confidence 99999999999999999999999999997 599999999999753 5899999999999999999
Q ss_pred HHcCccC----------------------CCccccHHHHHHHHHHhhhccCC
Q 012516 218 QGIGISR----------------------SDSLIRLDRLEYHIREELNKTAP 247 (462)
Q Consensus 218 ~~lG~s~----------------------~~~~~~~~~l~~~nr~~l~~~~~ 247 (462)
+.||||. +++.||++||+|+|+++|...+.
T Consensus 387 ~~lG~s~~~~e~~s~~e~i~~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~ 438 (592)
T 3al0_C 387 ALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEWVNGKHMRRIDL 438 (592)
T ss_dssp TTTTBCCCSCSCCCTTTTGGGCCTTSBCSSCCBCCHHHHHHHHHHHHTTSCH
T ss_pred HHhCCCCcccccCCHHHHHhhCChhhcCcccceeCHHHHhhhhHHHhhcCCH
Confidence 9999974 33478888888888888877654
No 12
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=3e-44 Score=359.18 Aligned_cols=185 Identities=17% Similarity=0.142 Sum_probs=145.4
Q ss_pred CCcccCC-ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceE
Q 012516 1 MGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 79 (462)
Q Consensus 1 LGl~wD~-~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~ 79 (462)
|||+||+ +++||+|++.|++++++|+++|+||+|+||++||++... .|++.||+++.+ | ...+
T Consensus 67 LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~-~Y~g~cr~~~~~-----------g----~~~~ 130 (298)
T 1nzj_A 67 YGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGG-IYDGHCRVLHHG-----------P----DNAA 130 (298)
T ss_dssp TTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTS-SCCCTTTTTCCC-----------S----TTCE
T ss_pred cCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCC-CCCCccccCCcC-----------C----CCCc
Confidence 7999995 999999999999999999999999999999999987644 799999987753 2 3568
Q ss_pred EEEeecCC-------------CC-CCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeecccccccc
Q 012516 80 LRMKQDMQ-------------ND-NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRR 145 (462)
Q Consensus 80 lR~K~d~~-------------~~-n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t 145 (462)
+|+|++.. .. +..++||||+|.+ ++|||||||||||++|||||||||+||++||
T Consensus 131 ~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~d------------G~PtY~la~vvdD~~~giThvIrG~D~l~~t 198 (298)
T 1nzj_A 131 VRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRD------------GLFAYNLAVVVDDHFQGVTEIVRGADLIEPT 198 (298)
T ss_dssp EEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTT------------SCBCHHHHHHHHHHHTTCCEEEEEGGGHHHH
T ss_pred EEEecCCcccceehhhCcccccCcccCCCCEEEECCC------------CCEeeeeeeeeEHHhcCCCEEEeCccccccH
Confidence 89987621 11 1468999999965 5999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCeEEEEeee-cCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccC
Q 012516 146 ASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 224 (462)
Q Consensus 146 ~~q~~l~~aLg~~~P~~~h~~~l-~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~ 224 (462)
|+|++||++|||+.|.|.|++++ +.+|+|||||+++..|++. +|+. ++.|++..+||+.
T Consensus 199 ~~q~~l~~alG~~~p~~~H~pll~~~~g~KLSKR~g~~~v~~~------~~~~--------------~~~~~l~~lG~~~ 258 (298)
T 1nzj_A 199 VRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNHAPALPKG------DPRP--------------VLIAALQFLGQQA 258 (298)
T ss_dssp HHHHHHHHHHTCCCCEEEEECBCCC-------------CCCSS------CCHH--------------HHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCCCeEEEeeeeECCCCCcccccCCccChhcC------CccH--------------HHHHHHHHcCCCC
Confidence 99999999999999999999985 9999999999998887653 4542 3677888888887
Q ss_pred CC--ccccHHH
Q 012516 225 SD--SLIRLDR 233 (462)
Q Consensus 225 ~~--~~~~~~~ 233 (462)
.+ ..++.+.
T Consensus 259 ~~~~~~~~~~~ 269 (298)
T 1nzj_A 259 EAHWQDFSVEQ 269 (298)
T ss_dssp CSCGGGSCHHH
T ss_pred CcccccCCHHH
Confidence 65 3567654
No 13
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.46 E-value=2.6e-15 Score=160.64 Aligned_cols=190 Identities=14% Similarity=0.119 Sum_probs=111.9
Q ss_pred CCcccCCceeccc-CHH-HHHHHHHHHHhCC-CeEEeCCCHHHHHH--Hh--C----CCCCCCCCCCChhHHHHHHHHHh
Q 012516 1 MGWEPFKITYTSD-YFQ-ELYELAVELIRRG-HAYVDHQTPEEIKE--YR--E----KKMNSPWRDRPIAESLKLFEDMR 69 (462)
Q Consensus 1 LGl~wD~~~~QS~-r~~-~y~~~a~~Li~~G-~AY~c~cs~eel~~--~r--~----~~~~~~~R~~~~ee~l~~~~~m~ 69 (462)
|||+||.. +||+ |.+ .|.+++++|+++| .+|.|.+....+.+ .. . ..+...|+..+.+ . +.
T Consensus 118 Lgi~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~--~----~~- 189 (523)
T 1irx_A 118 LGIEVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEI--I----EW- 189 (523)
T ss_dssp TTCCCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEECTTTCCEECE--E----EE-
T ss_pred cCCCceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCCceeccccchhhCCcccc--c----cc-
Confidence 79999865 9999 999 9999999999999 77766522211100 00 0 0122334332211 0 00
Q ss_pred CCcccCCceEEEEeecCCCCCCcCCCcE--EEEEecCCCCCCCCccccccccceeeeeecCCCccceEeec--ccccccc
Q 012516 70 NGRIEEGKATLRMKQDMQNDNFNMYDLI--AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCT--LEFETRR 145 (462)
Q Consensus 70 ~G~~~~~~~~lR~K~d~~~~n~~~~D~V--i~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg--~e~l~~t 145 (462)
.+ ..++|++.. .......|++ ..|... | -.| ++|+|+|+++|| .||++|+.+| .||.
T Consensus 190 ~~-----~~~~~f~~~--~g~~~~~d~~~G~g~~~w--~----~d~-~~~~~~l~~~vd--~~G~Dh~~~h~s~~~~--- 250 (523)
T 1irx_A 190 DG-----GWKVKYKCP--EGHEGWVDIRSGNVKLRW--R----VDW-PMRWSHFGVDFE--PAGKDHLVAGSSYDTG--- 250 (523)
T ss_dssp CS-----SSCEEECCS--SSCCCEECTTSSCEEECH--H----HHH-HHHHHHSCCCBC--CEEHHHHSTTSHHHHH---
T ss_pred CC-----CCceeeeec--CCCccccCCcCCCCCCCC--C----cch-HhhHHHcCCCCc--CCCcCccCCCcchhhH---
Confidence 11 133666551 1122222332 112110 0 012 578999999998 8899988887 5554
Q ss_pred HHHHHHHHHhCCCCCeEEEEeeecCC--CcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCcc
Q 012516 146 ASYFWLLHALGLYQPYVWEYSRLNVS--NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 223 (462)
Q Consensus 146 ~~q~~l~~aLg~~~P~~~h~~~l~~~--g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s 223 (462)
.|+. +.+||+++|.+.|++.+..+ |.|||||++.. .|+..+++. |.|+||++||++.|+.
T Consensus 251 -~~i~-~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~---------------i~~~~~~~~-~~pdalR~~l~~~~~~ 312 (523)
T 1irx_A 251 -KEII-KEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNV---------------ILLSDLYEV-LEPGLVRFIYARHRPN 312 (523)
T ss_dssp -HHHH-HHHHCCCCCBCCEECCEEESCC---------CC---------------CCHHHHHTT-SCHHHHHHHHHSSCTT
T ss_pred -HHHH-HHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCC---------------CCHHHHHHH-cCHHHHHHHHHhcCCC
Confidence 2333 27999999999999987555 89999999743 267889888 9999999999988874
Q ss_pred CCCccccHH-HHHH
Q 012516 224 RSDSLIRLD-RLEY 236 (462)
Q Consensus 224 ~~~~~~~~~-~l~~ 236 (462)
. +..|+++ .|..
T Consensus 313 ~-~~~fs~~~~l~~ 325 (523)
T 1irx_A 313 K-EIKIDLGLGILN 325 (523)
T ss_dssp S-CEEECCSTTHHH
T ss_pred C-CceeCcchhHHH
Confidence 3 4566666 4443
No 14
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.14 E-value=1e-10 Score=123.28 Aligned_cols=196 Identities=16% Similarity=0.166 Sum_probs=128.7
Q ss_pred CCccc-CCceecccCHHHHHHHHHHHHhCCCeEEe------CCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcc
Q 012516 1 MGWEP-FKITYTSDYFQELYELAVELIRRGHAYVD------HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 73 (462)
Q Consensus 1 LGl~w-D~~~~QS~r~~~y~~~a~~Li~~G~AY~c------~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~ 73 (462)
||+.+ |...++|++.+.+.+++++|+++|.||.+ ||.++. ..|..-|. +++ ++|..|.
T Consensus 103 LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~------~~yg~lsg-~~~-------~~l~~g~- 167 (461)
T 1li5_A 103 LNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD------PTYGVLSR-QDL-------DQLQAGA- 167 (461)
T ss_dssp TTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC------TTTTTTTT-C-----------------
T ss_pred cCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccc------cccccccC-CCH-------HHhhcCC-
Confidence 78997 66778999999999999999999999997 776642 12222232 122 1344442
Q ss_pred cCCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccceeeee-ecCCCccceEee--ccc----ccccc
Q 012516 74 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI-VDSIENITHSLC--TLE----FETRR 145 (462)
Q Consensus 74 ~~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~~V-DD~l~gITHviR--g~e----~l~~t 145 (462)
|+..+.... ...|+++++....-+|.-...| .++|.+|.+|++ .....|.++.|. |.| |..+.
T Consensus 168 -------rv~~~~~k~--~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~ 238 (461)
T 1li5_A 168 -------RVDVVDDKR--NPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENE 238 (461)
T ss_dssp --------------CC--STTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHH
T ss_pred -------cccchhccc--CccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHH
Confidence 222211122 2379999997543334333445 357888888764 233347799999 999 55566
Q ss_pred HHHHHHHHHhCCCCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccC
Q 012516 146 ASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 224 (462)
Q Consensus 146 ~~q~~l~~aLg~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~ 224 (462)
+.|...+ +|++.|. +.|.+++..+|.|||||.+.. .|+..+.++ |.|+||+-|++. +--.
T Consensus 239 ~aq~~a~--~g~~~~~~~~h~g~v~~~G~KMSKS~GN~---------------v~~~dll~~-~g~dalR~~ll~-~~~~ 299 (461)
T 1li5_A 239 IAQSTCA--HDGQYVNYWMHSGMVMVDREKMSKSLGNF---------------FTVRDVLKY-YDAETVRYFLMS-GHYR 299 (461)
T ss_dssp HHHHHHH--SSSCCEEEECCBCCEEETTBCCCGGGTCC---------------CBHHHHHTT-SCHHHHHHHHHS-SCTT
T ss_pred HHHHHHh--cCCCCCcEEEEeeEEEECCeEccccCCCc---------------cChhHHhhh-CCHHHHHHHHHc-CCcC
Confidence 6666543 6886665 456678888999999999743 256666665 999999999987 5556
Q ss_pred CCccccHHHHHHHHH
Q 012516 225 SDSLIRLDRLEYHIR 239 (462)
Q Consensus 225 ~~~~~~~~~l~~~nr 239 (462)
++..|+++.|....+
T Consensus 300 ~~~~fs~~~l~~~~~ 314 (461)
T 1li5_A 300 SQLNYSEENLKQARA 314 (461)
T ss_dssp SCEEECHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 777899998876544
No 15
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=98.96 E-value=2.7e-10 Score=123.60 Aligned_cols=187 Identities=11% Similarity=0.013 Sum_probs=122.6
Q ss_pred CCcccCCceecccC--HHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCce
Q 012516 1 MGWEPFKITYTSDY--FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKA 78 (462)
Q Consensus 1 LGl~wD~~~~QS~r--~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~ 78 (462)
||+.+|....+|++ .+.+.+..++|.++|.+|.|. . |+ .+|..
T Consensus 230 LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~-----------~-----------------------g~-~~G~~ 274 (592)
T 1iq0_A 230 LNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPR-----------E-----------------------GK-YAGAL 274 (592)
T ss_dssp TTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCS-----------S-----------------------ST-TTTCE
T ss_pred cCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCc-----------c-----------------------cC-cCCCE
Confidence 79999977788887 778999999999999999882 0 11 12344
Q ss_pred EEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccce---eeeee------cC-C-------------------
Q 012516 79 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDY---AHCIV------DS-I------------------- 129 (462)
Q Consensus 79 ~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~f---A~~VD------D~-l------------------- 129 (462)
++++. --.....+.+.|+.|++ +.|||.+ |.+++ |+ .
T Consensus 275 ~~~~~--~~g~~~~l~~~vi~ksd------------G~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~ 340 (592)
T 1iq0_A 275 VMDAS--PVIPGLEDPFFVLLRSN------------GTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGE 340 (592)
T ss_dssp EEECT--TTSCSCSCCEEEEECTT------------SCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEE
T ss_pred EEech--hcCCCCCCCceEEEecC------------CceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcc
Confidence 44321 00011123446666654 2455544 44444 22 1
Q ss_pred ---CccceE--eeccccccccHHHHHHHHHhCCCCC--eEEEEee--ecCCCcccccccccccccccccCCCCCchhhhH
Q 012516 130 ---ENITHS--LCTLEFETRRASYFWLLHALGLYQP--YVWEYSR--LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTL 200 (462)
Q Consensus 130 ---~gITHv--iRg~e~l~~t~~q~~l~~aLg~~~P--~~~h~~~--l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti 200 (462)
.+.+|+ |.|.+|....+++..++++||++.| .+.|+++ +..+|.|||||.+... ++
T Consensus 341 ~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v---------------~l 405 (592)
T 1iq0_A 341 AYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAV---------------SV 405 (592)
T ss_dssp ECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CC---------------BH
T ss_pred cCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCcc---------------CH
Confidence 177888 7999999999999999999999653 6789966 8889999999997532 34
Q ss_pred HHHHHcC------------------------CCHHHHHHHHHHcCccCCCccccHHHHHHHHH---HhhhccCCcceee
Q 012516 201 AGLRRRG------------------------VTSTSINAFVQGIGISRSDSLIRLDRLEYHIR---EELNKTAPRTMVV 252 (462)
Q Consensus 201 ~~lr~rG------------------------~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr---~~l~~~~~r~~~v 252 (462)
..|.+.| +-++||+=|+.+- ...++..|+++++.+++. .+|+..-.|...+
T Consensus 406 ~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~-~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~si 483 (592)
T 1iq0_A 406 DEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT-EPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSI 483 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHS-CTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhc-CCCCCCeecHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4444443 6677888887764 456788999999877765 2444444454433
No 16
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=98.85 E-value=1.3e-08 Score=105.70 Aligned_cols=203 Identities=17% Similarity=0.148 Sum_probs=115.0
Q ss_pred CCcc-cCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHH-----HHHHhCCCCCCCCCCCChhHHHHHHHHHhCCccc
Q 012516 1 MGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEE-----IKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 74 (462)
Q Consensus 1 LGl~-wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~ee-----l~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~ 74 (462)
||+. +|...+.|++.+..+++.++|+++|.||.+.++.+. +.+....|..+ .+..++.+..+.. ..|..
T Consensus 120 Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~---~~~~~~~~~~~~~-~~~~~- 194 (414)
T 3c8z_A 120 LRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYES---GYDRDTMLTLFAE-RGGDP- 194 (414)
T ss_dssp TTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTTTTT---CCCHHHHHHHHHH-TTCCT-
T ss_pred cCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhHhhc---CCCHHHHHHHHhh-ccccc-
Confidence 7888 887778899999999999999999999998765100 00000011101 1122222221100 01110
Q ss_pred CCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccceee----------eeecCCCccceEeecccccc
Q 012516 75 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH----------CIVDSIENITHSLCTLEFET 143 (462)
Q Consensus 75 ~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~----------~VDD~l~gITHviRg~e~l~ 143 (462)
+ .......+|++++++...-+|.-...| .+.|.+|..| ++|-|..|+.|+.- |..
T Consensus 195 ----------~-~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~---H~~ 260 (414)
T 3c8z_A 195 ----------D-RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFP---HHE 260 (414)
T ss_dssp ----------T-CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTT---HHH
T ss_pred ----------c-ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccH---HHH
Confidence 0 011123468999987543334322222 2456666443 67777777776642 555
Q ss_pred ccHHHHHHHHHhCCCCC--eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcC
Q 012516 144 RRASYFWLLHALGLYQP--YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 221 (462)
Q Consensus 144 ~t~~q~~l~~aLg~~~P--~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG 221 (462)
+.+.|...+ .|..+| .+.|.+.+.++|.|||||.+. ..++..+.++||.|+|++=|++. +
T Consensus 261 ~~~a~~~a~--~g~~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~~ll~~g~g~D~lR~~ll~-~ 322 (414)
T 3c8z_A 261 YSAAHAESV--TGERRFARHYVHTGMIGWDGHKMSKSRGN---------------LVLVSQLRAQGVDPSAIRLGLFS-G 322 (414)
T ss_dssp HHHHHHHHH--HCCSCSEEEEEEECCBC----------------------------CBHHHHHHTTCCHHHHHHHHHT-S
T ss_pred HHHHHHHHh--cCCCCcCeEEEEcCEEecCCeEcccccCC---------------cCCHHHHhhccCCcchheeEEEe-c
Confidence 555543322 377444 356768888999999999864 23688999999999999999998 6
Q ss_pred ccCCCccccHHHHHHHHHH
Q 012516 222 ISRSDSLIRLDRLEYHIRE 240 (462)
Q Consensus 222 ~s~~~~~~~~~~l~~~nr~ 240 (462)
-..++..|+++.|...++.
T Consensus 323 ~~~~d~~fs~~~l~~~~~~ 341 (414)
T 3c8z_A 323 HYREDRFWSNEVLDEANAR 341 (414)
T ss_dssp CTTSCBCCCHHHHHHHHHH
T ss_pred CcCCCCCcCHHHHHHHHHH
Confidence 6677788999988776554
No 17
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=98.77 E-value=3.3e-08 Score=104.74 Aligned_cols=206 Identities=16% Similarity=0.118 Sum_probs=116.9
Q ss_pred CCcccCCceeccc--CHHHHHHHHHHHHhCCCeEEe-----CCCHHHHHHHhCCCCC-CCCC--CCChhHHHHHHHHHhC
Q 012516 1 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMN-SPWR--DRPIAESLKLFEDMRN 70 (462)
Q Consensus 1 LGl~wD~~~~QS~--r~~~y~~~a~~Li~~G~AY~c-----~cs~eel~~~r~~~~~-~~~R--~~~~ee~l~~~~~m~~ 70 (462)
||+.||..+++|+ +.+.++++.++|.++|.||.| +|...+.--.-..-.. +.|. ..+++. +.
T Consensus 87 lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~-------~~- 158 (497)
T 2csx_A 87 LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEY-------IK- 158 (497)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------------------------------------C-
T ss_pred hCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeE-------Ee-
Confidence 7999998888999 999999999999999999999 6766543211100000 1221 111110 00
Q ss_pred CcccCCceEEEEeecC-------------C--CCC-----------CcCCCcEEEEE--ecC-CCCCCCC-cccccc---
Q 012516 71 GRIEEGKATLRMKQDM-------------Q--NDN-----------FNMYDLIAYRI--KFT-PHPHAGD-KWCIYP--- 117 (462)
Q Consensus 71 G~~~~~~~~lR~K~d~-------------~--~~n-----------~~~~D~Vi~R~--~~~-~h~~~gd-~~~~~P--- 117 (462)
.-.+.+|++- . .+. ..++|+.|-|. +.. =+|..++ .|.++.
T Consensus 159 ------~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~d 232 (497)
T 2csx_A 159 ------EPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFD 232 (497)
T ss_dssp ------CEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHH
T ss_pred ------cCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecc
Confidence 1112222210 0 010 23679998882 210 0111111 111110
Q ss_pred -ccceeeeeec---CCCccceEeecccccc----ccHHHHHHHHHhCCCCCe-EEEEeeecCCCcccccccccccccccc
Q 012516 118 -SYDYAHCIVD---SIENITHSLCTLEFET----RRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKY 188 (462)
Q Consensus 118 -tY~fA~~VDD---~l~gITHviRg~e~l~----~t~~q~~l~~aLg~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~ 188 (462)
...|++++.| ....+++.+.|.|++. ..+. ...++|+++|. +.|.+++..+|.|||||.+...
T Consensus 233 s~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a---~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN~i----- 304 (497)
T 2csx_A 233 ALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPA---FLMSLGYELPKKVFAHGWWTVEGKKMSKTLGNVV----- 304 (497)
T ss_dssp HHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHH---HHHHHTCCCCSCEEEECCEESSSSBCCTTTTCCC-----
T ss_pred cchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHH---HHHHcCCCCCcEEEECcEEEeCCceeCCcCCCCC-----
Confidence 0012444444 2226788999999987 3333 34577998886 7788888889999999997432
Q ss_pred cCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHHHH
Q 012516 189 VDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 239 (462)
Q Consensus 189 ~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr 239 (462)
++..+.+ +|.++|++-|++..+-..++..|+++.+....+
T Consensus 305 ----------~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~ 344 (497)
T 2csx_A 305 ----------DPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRIN 344 (497)
T ss_dssp ----------CHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHH
T ss_pred ----------CHHHHHH-HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHH
Confidence 2334443 478999999999888777888999998876543
No 18
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=98.65 E-value=1.1e-07 Score=99.95 Aligned_cols=194 Identities=14% Similarity=0.135 Sum_probs=121.2
Q ss_pred CCcccCCce-ecccCHHHHHHHHHHHHhCCCeE------EeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcc
Q 012516 1 MGWEPFKIT-YTSDYFQELYELAVELIRRGHAY------VDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 73 (462)
Q Consensus 1 LGl~wD~~~-~QS~r~~~y~~~a~~Li~~G~AY------~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~ 73 (462)
||+.+|..+ ++|++.+...++.++|+++|.|| ++||.+.. +.|..-.+ ++.+ +|..|.
T Consensus 106 LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~------~~yg~Ls~-~~~~-------~~~~g~- 170 (462)
T 3tqo_A 106 LRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF------KDYGKLSH-RHLD-------ELQAGA- 170 (462)
T ss_dssp HTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC------TTTTTTTT-CSCC--------------
T ss_pred cCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc------cccccccC-CChH-------HhhccC-
Confidence 688887544 89999999999999999999999 56776542 12322211 1222 233332
Q ss_pred cCCceEEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCcc-ccccccceeeeeecCCC---ccceEeecccccc----cc
Q 012516 74 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCIVDSIE---NITHSLCTLEFET----RR 145 (462)
Q Consensus 74 ~~~~~~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~-~~~PtY~fA~~VDD~l~---gITHviRg~e~l~----~t 145 (462)
|+..+.. ..+-.||++++....-+|.-...| .|-|.+|+.|++...-. .|+-..-|.|++- |.
T Consensus 171 -------r~~~~~~--K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHhene 241 (462)
T 3tqo_A 171 -------RVEVSDS--KRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENE 241 (462)
T ss_dssp -------------C--CSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHH
T ss_pred -------ccccccc--cCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhH
Confidence 2222222 223479999998765566555555 57899999886654322 4454556666554 44
Q ss_pred HHHHHHHHHhCCCCCeEE-EEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccC
Q 012516 146 ASYFWLLHALGLYQPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 224 (462)
Q Consensus 146 ~~q~~l~~aLg~~~P~~~-h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~ 224 (462)
..|..- +.|.+.+.|+ |-+.+..+|.|||||.+.. .|++.+.+. |.|+||+=|+++-.. .
T Consensus 242 iaqs~a--~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~---------------i~~~dll~~-~g~dalR~~lls~~y-r 302 (462)
T 3tqo_A 242 IAQSEA--GEEKPFVKLWMHAGLLEINKEKMSKSLGNI---------------ISIREALKE-SDVEVLRYFLLSGHY-R 302 (462)
T ss_dssp HHHHHH--HHSSCCEEEEEEECCEEETTEECCTTTTCC---------------CBHHHHHHH-SCHHHHHHHHHHSCT-T
T ss_pred HHHHHH--HcCCCcceEEEEccEEecCCcCccccCCCc---------------ccHHHHHhh-cChHHhhhhhccCCC-C
Confidence 444321 2365445554 4457899999999998753 356666654 999999998887543 4
Q ss_pred CCccccHHHHHHH
Q 012516 225 SDSLIRLDRLEYH 237 (462)
Q Consensus 225 ~~~~~~~~~l~~~ 237 (462)
++..|+.+.|...
T Consensus 303 ~~l~fs~~~l~~a 315 (462)
T 3tqo_A 303 NPLSYSKENLENG 315 (462)
T ss_dssp SCEEECHHHHHHH
T ss_pred CCcCcCHHHHHHH
Confidence 5667888887654
No 19
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=98.57 E-value=2.9e-08 Score=104.59 Aligned_cols=163 Identities=13% Similarity=0.060 Sum_probs=108.3
Q ss_pred CCcccCCceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceEE
Q 012516 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 80 (462)
Q Consensus 1 LGl~wD~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~l 80 (462)
||++.|..+.-|+-.+...+.+++|.++|.+|.. +|..++
T Consensus 158 l~V~fD~~~~Ess~~~~~~~vv~~L~~~g~~~e~----------------------------------------dGa~~~ 197 (464)
T 3fnr_A 158 AKIKIDSYVSERSYYDALNATLESLKEHKGIYEQ----------------------------------------EGKIWL 197 (464)
T ss_dssp TTCCCSCEEEGGGGSTTHHHHHHHHHHTTCEEEE----------------------------------------TTEEEE
T ss_pred hCCCceeecCHHHHHHHHHHHHHHHHHCCCEEEe----------------------------------------CCeEEE
Confidence 6777776555544333677788888888888842 123333
Q ss_pred EEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccc---eeeeeecCCCccceE--eeccccccccHHHHHHHHHh
Q 012516 81 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYFWLLHAL 155 (462)
Q Consensus 81 R~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~---fA~~VDD~l~gITHv--iRg~e~l~~t~~q~~l~~aL 155 (462)
++. .-..-.|.|+.|++ |.|||. +|.++++..++++++ |+|.||....+++..++++|
T Consensus 198 ~~~-----~~g~~~~~vl~ksD------------G~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~l 260 (464)
T 3fnr_A 198 ASS-----QKGDEKDRVIIRED------------GRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL 260 (464)
T ss_dssp CGG-----GGTCSSCEEEECTT------------SCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTT
T ss_pred Eec-----ccCCCCceEEEeCC------------CceehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHc
Confidence 321 00111367888876 356776 899999999999999 59999999999999999999
Q ss_pred CCCCCeEEEEe--eecC--CCc--ccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccc
Q 012516 156 GLYQPYVWEYS--RLNV--SNT--VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLI 229 (462)
Q Consensus 156 g~~~P~~~h~~--~l~~--~g~--kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~ 229 (462)
|+.+|.+.|.+ .+++ +|. |||||.+... ++..+.+. +-++|++=|+..- -..++..|
T Consensus 261 G~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v---------------~l~dll~~-~g~dalRy~~l~~-~~~~d~~F 323 (464)
T 3fnr_A 261 GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFI---------------LMSDVVDE-IGSDALRYIFLSK-KCDTHLEF 323 (464)
T ss_dssp TCCGGGEEEEEECCEEEEETTEECCC---CCSSC---------------BHHHHHHH-HCHHHHHHHTTSS-CTTSCEEE
T ss_pred CCCccceEEEEeeeEEecCCCcccCCcCcCCCCC---------------CHHHHHhh-ccHHHHHHHHHhc-CCCCCCcc
Confidence 99888766654 3444 775 9999997432 34444432 4477887766543 34566688
Q ss_pred cHHHHHHH
Q 012516 230 RLDRLEYH 237 (462)
Q Consensus 230 ~~~~l~~~ 237 (462)
+++++.+.
T Consensus 324 d~~~~~~~ 331 (464)
T 3fnr_A 324 DISDLQKE 331 (464)
T ss_dssp EGGGGGCC
T ss_pred CHHHHHHH
Confidence 88877543
No 20
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=98.46 E-value=3.3e-07 Score=97.00 Aligned_cols=91 Identities=13% Similarity=-0.023 Sum_probs=67.3
Q ss_pred ccceEeeccccccccHHHH---HHHHHhCCCCCe-EEEEeeecC-CCcccccccccccccccccCCCCCchhhhHHHHHH
Q 012516 131 NITHSLCTLEFETRRASYF---WLLHALGLYQPY-VWEYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 205 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~---~l~~aLg~~~P~-~~h~~~l~~-~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~ 205 (462)
+.+..+.|.|++- +.+. .+..++|+++|. +.|.+++.. +|.|||||.+... ++..+.+
T Consensus 251 p~di~~~G~D~~~--fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i---------------~p~d~i~ 313 (500)
T 2d5b_A 251 PHAWHLIGKDILK--PHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVV---------------DPFALLE 313 (500)
T ss_dssp GGEEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTCCC---------------CHHHHHH
T ss_pred CCeEEEEeechhh--hHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCCCC---------------CHHHHHH
Confidence 5678899999987 3221 345678998886 677888877 8999999997432 2333333
Q ss_pred cCCCHHHHHHHHHHcCccCCCccccHHHHHHHHH
Q 012516 206 RGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 239 (462)
Q Consensus 206 rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr 239 (462)
+|.++|++-|++..+-..++..|+++.+.....
T Consensus 314 -~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~ 346 (500)
T 2d5b_A 314 -KYGRDALRYYLLREIPYGQDTPVSEEALRTRYE 346 (500)
T ss_dssp -HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred -hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHH
Confidence 478999999999877777788999998866543
No 21
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=5.1e-08 Score=100.76 Aligned_cols=120 Identities=10% Similarity=0.003 Sum_probs=80.6
Q ss_pred CCcccCC--ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCce
Q 012516 1 MGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKA 78 (462)
Q Consensus 1 LGl~wD~--~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~ 78 (462)
+|++|++ +++||+++. +.+++..++ .|.|+||..++++.... +.
T Consensus 112 ~Gldp~k~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~~--------------------~~--------- 157 (394)
T 2dlc_X 112 INVPIEKLKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGAD--------------------VV--------- 157 (394)
T ss_dssp TTCCCTTCEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTTT--------------------TS---------
T ss_pred cCCChhHcEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccHh--------------------hh---------
Confidence 5999994 899999874 445555555 69999999998854210 00
Q ss_pred EEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCC
Q 012516 79 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY 158 (462)
Q Consensus 79 ~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~ 158 (462)
|.+ .+.. .+--+|...-+.|..+++++||++|.|+..++..++.|++.||+.
T Consensus 158 --r~~-----~~~~---------------------~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~~ 209 (394)
T 2dlc_X 158 --KQV-----ANPL---------------------LSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYK 209 (394)
T ss_dssp --CCC-----SSCC---------------------THHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCC
T ss_pred --ccc-----CCcc---------------------ceeeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCCC
Confidence 000 0000 012355555556777799999999999999999999999999999
Q ss_pred CCeEEEEeee-cCC-Ccccccccccc
Q 012516 159 QPYVWEYSRL-NVS-NTVMSKRKLNF 182 (462)
Q Consensus 159 ~P~~~h~~~l-~~~-g~kLSKR~~~~ 182 (462)
.|...|.+.| +++ |+|||||....
T Consensus 210 ~p~~l~~pll~gl~~G~KMSKS~~ns 235 (394)
T 2dlc_X 210 KRAHLMNPMVPGLAQGGKMSASDPNS 235 (394)
T ss_dssp CCEEEEECCCCCCC----------CC
T ss_pred CCEEEecccccCCCCCCcCCCCCCCC
Confidence 9999999875 688 99999998653
No 22
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.96 E-value=2e-06 Score=86.41 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=89.2
Q ss_pred CCcccCC--ceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCce
Q 012516 1 MGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKA 78 (462)
Q Consensus 1 LGl~wD~--~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~ 78 (462)
+|++|+. +++||+.... .++++.+.. |.|.||..+|.+... +. |...
T Consensus 100 ~Gldp~k~~i~~qS~~~~~-~~~~~~~~~----l~~~~t~~~l~~~~~--~~--------------------~~~~---- 148 (323)
T 2cyb_A 100 LGLDESRAKFVLGSEYQLS-RDYVLDVLK----MARITTLNRARRSMD--EV--------------------SRRK---- 148 (323)
T ss_dssp TTCCTTTCEEEEGGGTTTS-HHHHHHHHH----HHHHSBHHHHHHHTT--TT--------------------CSCS----
T ss_pred hCCCccceEEEEcchhccc-hHHHHHHHH----HhCccCHHHHhccch--hh--------------------cccc----
Confidence 6999984 7999999743 234444433 889999999986421 00 1000
Q ss_pred EEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCC
Q 012516 79 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY 158 (462)
Q Consensus 79 ~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~ 158 (462)
.+.+ .+.-+|.+..+.|+.+.++|||++|.|...+...++.|.+.||..
T Consensus 149 ----------~~~~---------------------~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~ 197 (323)
T 2cyb_A 149 ----------EDPM---------------------VSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYS 197 (323)
T ss_dssp ----------SSCB---------------------THHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCC
T ss_pred ----------CCCC---------------------chhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCC
Confidence 0000 024588888899999999999999999999999999999999999
Q ss_pred CCeEEEEeee-cCCCcccccccc
Q 012516 159 QPYVWEYSRL-NVSNTVMSKRKL 180 (462)
Q Consensus 159 ~P~~~h~~~l-~~~g~kLSKR~~ 180 (462)
+|...|.+.| .++|+||||+..
T Consensus 198 ~p~~l~~pll~~l~G~KMSKS~~ 220 (323)
T 2cyb_A 198 SPVCLHTPILVGLDGQKMSSSKG 220 (323)
T ss_dssp CCEEEEECCCBCTTSSBCCTTTT
T ss_pred CceEEecCcccCCCCCcccCCcC
Confidence 9999999975 788999999953
No 23
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=97.94 E-value=3.6e-05 Score=81.53 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=103.9
Q ss_pred CCcccC-CceecccCHHHHHHHHHHHHhCCCeEE-----eCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCccc
Q 012516 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 74 (462)
Q Consensus 1 LGl~wD-~~~~QS~r~~~y~~~a~~Li~~G~AY~-----c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~ 74 (462)
||+.+| .....|++.+...++.++|+++|.||. .||... . +.|.. +|.. ++ -++|..|.
T Consensus 133 Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~-f-----~~yG~----ls~~-~~--~~~~~~g~-- 197 (501)
T 3sp1_A 133 LNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC-F-----KSYGE----MAGI-DL--IDKDMTLP-- 197 (501)
T ss_dssp TTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG-C-----TTTTT----TTC----------------
T ss_pred cCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc-c-----CCccc----cCCC-Ch--hhhhccCC--
Confidence 688877 334689999999999999999999994 455544 1 11211 1110 11 02344442
Q ss_pred CCceEEEEeecCCCCCCcCCCcEEEEEe--cCCC-CCCCCcc-ccccccceeeee--ecCC-CccceEeeccccccc-cH
Q 012516 75 EGKATLRMKQDMQNDNFNMYDLIAYRIK--FTPH-PHAGDKW-CIYPSYDYAHCI--VDSI-ENITHSLCTLEFETR-RA 146 (462)
Q Consensus 75 ~~~~~lR~K~d~~~~n~~~~D~Vi~R~~--~~~h-~~~gd~~-~~~PtY~fA~~V--DD~l-~gITHviRg~e~l~~-t~ 146 (462)
| +++........||++|+.. ..+| |.-.+.| .+.|-.|.-|.. ..++ ..++--.=|.|++-. -.
T Consensus 198 ------r--~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLifpHhe 269 (501)
T 3sp1_A 198 ------R--VDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHI 269 (501)
T ss_dssp --------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTTTHHH
T ss_pred ------c--cCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeeccccccchHH
Confidence 1 1111222345899999762 1122 2233344 468888766543 2222 123333457776542 11
Q ss_pred HHHHHHHHh-CCCCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccC
Q 012516 147 SYFWLLHAL-GLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 224 (462)
Q Consensus 147 ~q~~l~~aL-g~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~ 224 (462)
--+....++ |-+.+. +.|-+++..+|.||||+.+.. .|++.+.++||.|++++=||+.- --.
T Consensus 270 neiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~---------------it~~dll~~gyg~d~lR~~lls~-~yr 333 (501)
T 3sp1_A 270 NEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNF---------------ITVKDLEDQNFSPLDFRYLCLTS-HYR 333 (501)
T ss_dssp HHHHHHHHHHTSCCCSEEEEECCEECC----------C---------------CCHHHHHHTTCCHHHHHHHHHTS-CTT
T ss_pred HHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCc---------------CCHHHHHhcCCCHHHHHHHHHhc-cCC
Confidence 222223333 433343 456688899999999998643 37888999999999999998875 334
Q ss_pred CCccccHHHHHHHH
Q 012516 225 SDSLIRLDRLEYHI 238 (462)
Q Consensus 225 ~~~~~~~~~l~~~n 238 (462)
++..|+.+.|....
T Consensus 334 ~~l~fs~~~l~~a~ 347 (501)
T 3sp1_A 334 NQLKFSLDNLQASK 347 (501)
T ss_dssp SCEECCHHHHHHHH
T ss_pred CCCccCHHHHHHHH
Confidence 56678877775543
No 24
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=97.92 E-value=6.9e-05 Score=80.46 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=73.3
Q ss_pred cCCCccceEeecccccc-ccHHHHHHHHHhCCCCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHH
Q 012516 127 DSIENITHSLCTLEFET-RRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 204 (462)
Q Consensus 127 D~l~gITHviRg~e~l~-~t~~q~~l~~aLg~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr 204 (462)
|....+.|++ |.|++. .+..+..++.++|++.|. +..++++..+|.|||||.+... ++..+.
T Consensus 297 ~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~~G~KMSKS~GNvv---------------~p~d~i 360 (560)
T 3h99_A 297 DSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFI---------------KASTWL 360 (560)
T ss_dssp TCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEETTEECCTTTTCCC---------------BHHHHH
T ss_pred CCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEeCCeeccccCCCcC---------------CHHHHH
Confidence 4556678888 999986 333454688899998884 3334567779999999997432 345555
Q ss_pred HcCCCHHHHHHHHHHcCccC-CCccccHHHHH-HHHHHhhhcc
Q 012516 205 RRGVTSTSINAFVQGIGISR-SDSLIRLDRLE-YHIREELNKT 245 (462)
Q Consensus 205 ~rG~~peAi~~f~~~lG~s~-~~~~~~~~~l~-~~nr~~l~~~ 245 (462)
+. |.++|++=|++..+... .+..|+++.+. ..|++.+++.
T Consensus 361 ~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l 402 (560)
T 3h99_A 361 NH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKV 402 (560)
T ss_dssp HH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCC
T ss_pred HH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 55 88999999998877655 78899998875 4676655443
No 25
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.74 E-value=9.8e-06 Score=83.02 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=77.4
Q ss_pred CCcccC--CceecccCHHHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCce
Q 012516 1 MGWEPF--KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKA 78 (462)
Q Consensus 1 LGl~wD--~~~~QS~r~~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~ 78 (462)
+|++|+ .+++||+.. .+.+++..++. |.|+||..+++..... + .+
T Consensus 108 ~Gldp~k~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~~~~--------------------v-~~------- 154 (372)
T 1n3l_A 108 IGVPLEKLKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKAGAE--------------------V-VK------- 154 (372)
T ss_dssp HTCCCTTEEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHHTTT--------------------T-SC-------
T ss_pred cCCChhhcEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhchhh--------------------h-hc-------
Confidence 489998 589999984 34566766666 8899999988753100 0 00
Q ss_pred EEEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecCCCccceEeeccccccccHHHHHHHHHhCCC
Q 012516 79 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY 158 (462)
Q Consensus 79 ~lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~l~gITHviRg~e~l~~t~~q~~l~~aLg~~ 158 (462)
.+ .+..+ +--+|-.--+.|=.+.+.|||++|.|...+...++.|++.+|+.
T Consensus 155 ---~~-----~~~~~---------------------g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~~~ 205 (372)
T 1n3l_A 155 ---QV-----EHPLL---------------------SGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYS 205 (372)
T ss_dssp ---CC-----SSCCH---------------------HHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCC
T ss_pred ---cc-----CCCcc---------------------eeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcCCC
Confidence 00 00000 11133333333334478899999999999999999999999999
Q ss_pred CCeEEEEeee-cCCCccccccccc
Q 012516 159 QPYVWEYSRL-NVSNTVMSKRKLN 181 (462)
Q Consensus 159 ~P~~~h~~~l-~~~g~kLSKR~~~ 181 (462)
.|...|.+.| +++|+|||||...
T Consensus 206 ~p~~l~~pll~gldG~KMSKS~~n 229 (372)
T 1n3l_A 206 KRVHLMNPMVPGLTGSKMSSSEEE 229 (372)
T ss_dssp CCEEEEECCCCCSSCC-------C
T ss_pred CCEEEecCccCCCCcccccCCCCC
Confidence 9999998875 6889999999865
No 26
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=97.62 E-value=1.5e-05 Score=86.54 Aligned_cols=181 Identities=13% Similarity=0.078 Sum_probs=112.4
Q ss_pred CCcccCCceecccCH-HHHHHHHHHHHhCCCeEEeCCCHHHHHHHhCCCCCCCCCCCChhHHHHHHHHHhCCcccCCceE
Q 012516 1 MGWEPFKITYTSDYF-QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 79 (462)
Q Consensus 1 LGl~wD~~~~QS~r~-~~y~~~a~~Li~~G~AY~c~cs~eel~~~r~~~~~~~~R~~~~ee~l~~~~~m~~G~~~~~~~~ 79 (462)
||+..|.....|++. +...+..+.|.++|.+|... |..+
T Consensus 284 L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~d----------------------------------------Ga~~ 323 (607)
T 1f7u_A 284 LNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDK----------------------------------------GAVL 323 (607)
T ss_dssp TTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEET----------------------------------------TEEE
T ss_pred cCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEEC----------------------------------------CcEE
Confidence 688888767788887 77889999999999999521 2223
Q ss_pred EEEeecCCCCCCcCCCcEEEEEecCCCCCCCCccccccccceeeeeecC-CCccceEe--eccccccccHHHHHHHHHhC
Q 012516 80 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS-IENITHSL--CTLEFETRRASYFWLLHALG 156 (462)
Q Consensus 80 lR~K~d~~~~n~~~~D~Vi~R~~~~~h~~~gd~~~~~PtY~fA~~VDD~-l~gITHvi--Rg~e~l~~t~~q~~l~~aLg 156 (462)
+++.- . ...+.+.|+.|+++++ .|-|=|||.+++.+ .++.+++| .|.+|....++...+.++||
T Consensus 324 ~~~~~---~-g~~~d~~v~~KsDG~~---------~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG 390 (607)
T 1f7u_A 324 IDLTK---F-NKKLGKAIVQKSDGTT---------LYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMG 390 (607)
T ss_dssp EEGGG---T-CTTTCEEEEECTTSCC---------CHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTT
T ss_pred EEecc---c-CCCCCceeEeccCCCc---------CCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcC
Confidence 32110 0 1112245666654211 23344667788777 46899999 99999999999999999999
Q ss_pred CCCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCC---------CH----------------
Q 012516 157 LYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGV---------TS---------------- 210 (462)
Q Consensus 157 ~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~---------~p---------------- 210 (462)
++.+. ..|.+.... .+||||.+... |++.|.+... .|
T Consensus 391 ~~~~~~~~Hv~fg~v--~kMSkR~G~~v---------------~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~v 453 (607)
T 1f7u_A 391 FEWAKDLQHVNFGMV--QGMSTRKGTVV---------------FLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLV 453 (607)
T ss_dssp CGGGGGEEEECCCCE--ESCCGGGTCCC---------------BHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHH
T ss_pred CCcCcEEEEeccccc--ccccCCCCCcc---------------cHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHH
Confidence 97664 334333111 26999997542 2333333221 23
Q ss_pred --HHHHHHHHHcCccCCCccccHHHHHHHHH---HhhhccCCcceee
Q 012516 211 --TSINAFVQGIGISRSDSLIRLDRLEYHIR---EELNKTAPRTMVV 252 (462)
Q Consensus 211 --eAi~~f~~~lG~s~~~~~~~~~~l~~~nr---~~l~~~~~r~~~v 252 (462)
.||+-|+. -.-..++..|||+++.+++. -+|+-.-.|...+
T Consensus 454 gi~avry~~L-s~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SI 499 (607)
T 1f7u_A 454 GISAVMIQDM-QGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSV 499 (607)
T ss_dssp HHHHHHHHHH-SSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHH
Confidence 24444433 35566778999999877764 3455444444333
No 27
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=97.54 E-value=0.00013 Score=77.44 Aligned_cols=90 Identities=14% Similarity=0.039 Sum_probs=62.7
Q ss_pred cceEeeccccccccHHHH---HHHHHhCCCCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcC
Q 012516 132 ITHSLCTLEFETRRASYF---WLLHALGLYQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 207 (462)
Q Consensus 132 ITHviRg~e~l~~t~~q~---~l~~aLg~~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG 207 (462)
++--+-|.|++- +.+. .+..++|+++| .+++++++..+|.|||||.+... ++..+.+.
T Consensus 266 ~di~~~G~D~~~--fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN~v---------------~p~d~i~~- 327 (524)
T 2x1l_A 266 ADLHMIGKDIIR--FHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNVV---------------DPVNLVDT- 327 (524)
T ss_dssp CSEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEESS---------------CHHHHHHH-
T ss_pred CeEEEEeechhH--hHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCCCC---------------CHHHHHHH-
Confidence 445566777762 2222 24456798777 46666888889999999997432 33444443
Q ss_pred CCHHHHHHHHHHcCccCCCccccHHHHHHHHH
Q 012516 208 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 239 (462)
Q Consensus 208 ~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr 239 (462)
|.++|++=|++..+-..++..|+++.+.....
T Consensus 328 ~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~ 359 (524)
T 2x1l_A 328 FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVN 359 (524)
T ss_dssp HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHH
T ss_pred cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Confidence 77999999998877777888999998866544
No 28
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=97.25 E-value=0.0011 Score=70.70 Aligned_cols=91 Identities=14% Similarity=-0.004 Sum_probs=50.3
Q ss_pred eeccccccc-cHHHHHHHHHhCCCCCeEE-EEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHH
Q 012516 136 LCTLEFETR-RASYFWLLHALGLYQPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSI 213 (462)
Q Consensus 136 iRg~e~l~~-t~~q~~l~~aLg~~~P~~~-h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi 213 (462)
+-|.|++.. +..+..++.++|+++|... ..+.+..+|.|||||.+... || ..+.+ .|-++|+
T Consensus 281 ~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~~G~KMSKS~GNvi----------~p-----~d~i~-~~GaDal 344 (536)
T 4dlp_A 281 IIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGNVI----------DP-----FELVE-RYGLDQL 344 (536)
T ss_dssp EEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC------------C----------CH-----HHHHH-HHCHHHH
T ss_pred EeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEeeCCceecccCCCCC----------CH-----HHHHH-HcCcHHH
Confidence 448887752 3334456778898877533 33567779999999997432 22 23322 2668999
Q ss_pred HHHHHHcCccCCCccccHHHHHH-HHHHhh
Q 012516 214 NAFVQGIGISRSDSLIRLDRLEY-HIREEL 242 (462)
Q Consensus 214 ~~f~~~lG~s~~~~~~~~~~l~~-~nr~~l 242 (462)
+=|++..+-..++..|+++.+.. .|....
T Consensus 345 R~~ll~~~~~~~d~~fs~~~~~~~~n~~l~ 374 (536)
T 4dlp_A 345 RYFLMREVPFGQDGSYSHEAIVNRTNADLA 374 (536)
T ss_dssp HHHHHHHSCTTSCEECCHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99998866666778999988754 444433
No 29
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=96.72 E-value=0.00066 Score=74.00 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=29.5
Q ss_pred CCcccCCceecccC--HHHHHHHHHHHHhCCCeEEe
Q 012516 1 MGWEPFKITYTSDY--FQELYELAVELIRRGHAYVD 34 (462)
Q Consensus 1 LGl~wD~~~~QS~r--~~~y~~~a~~Li~~G~AY~c 34 (462)
||+.+|.....|++ .+...+..++|.++|.+|.|
T Consensus 260 L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~ 295 (629)
T 2zue_A 260 LGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIP 295 (629)
T ss_dssp HTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECC
T ss_pred cCCccccccCcCccccchhHHHHHHHHHHCCCcccc
Confidence 58888877788888 67889999999999999965
No 30
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=91.74 E-value=0.22 Score=53.32 Aligned_cols=89 Identities=12% Similarity=-0.001 Sum_probs=58.9
Q ss_pred eeccccccc-cHHHHHHHHHhCCCCCeE-EEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHH
Q 012516 136 LCTLEFETR-RASYFWLLHALGLYQPYV-WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSI 213 (462)
Q Consensus 136 iRg~e~l~~-t~~q~~l~~aLg~~~P~~-~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi 213 (462)
+=|.|++.- +-..-.++.++|+++|.. ..++.+..+|.|||||.+... || ..+.+. |-++|+
T Consensus 299 ~~GkDii~FH~~~wpa~L~a~g~~~~~~v~~hg~v~~~G~KMSKS~GNvV----------~p-----~d~i~~-~G~Dal 362 (564)
T 3kfl_A 299 VVGKDILKFHAIYWPAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAF----------DP-----VEKAKE-FGIDAL 362 (564)
T ss_dssp EEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEETTEECCTTTTCCC----------CH-----HHHHHH-HCHHHH
T ss_pred EEeecccchHHHHHHHHHHhCCCCCCcEEEEcccEeeCCccccccCCCCC----------CH-----HHHHHH-cCcHHH
Confidence 348887651 111224557889887753 334568889999999997432 22 233322 668999
Q ss_pred HHHHHHcCccCCCccccHHHHHH-HHHH
Q 012516 214 NAFVQGIGISRSDSLIRLDRLEY-HIRE 240 (462)
Q Consensus 214 ~~f~~~lG~s~~~~~~~~~~l~~-~nr~ 240 (462)
+=|++..+-..++..|+++.+.. .|.+
T Consensus 363 R~~ll~~~~~~~D~~fs~~~~~~~~n~~ 390 (564)
T 3kfl_A 363 KYFLMRESNFQDDGDYSDKNMVARLNGE 390 (564)
T ss_dssp HHHHHHHCCSSCCEECCHHHHHHHHHHT
T ss_pred HHHHHHcCCcccCCCCCHHHHHHHHHHH
Confidence 99998866666788999998765 4544
No 31
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=89.58 E-value=0.59 Score=49.37 Aligned_cols=90 Identities=13% Similarity=0.014 Sum_probs=57.0
Q ss_pred eeccccccc-cHHHHHHHHHhCCCCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHH
Q 012516 136 LCTLEFETR-RASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSI 213 (462)
Q Consensus 136 iRg~e~l~~-t~~q~~l~~aLg~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi 213 (462)
+-|.|.+-- +-.-.....++|++.|. +.+.+.|..+|.||||+.+... ||. .+.+ +|.++|+
T Consensus 283 ~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hg~l~~~G~KMSKSlGNvi----------~p~-----~~i~-~ygaD~l 346 (542)
T 3u1f_A 283 VIGKDILKFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVF----------DPV-----EKAE-EFGYDAL 346 (542)
T ss_dssp EEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCCEETTBCCBTTTTBCC----------CHH-----HHHH-HHCHHHH
T ss_pred EecccccccccchhHHHHHhhcccccceeccccceecCCceeccccCCCC----------Chh-----HHHh-hcCchHH
Confidence 347775321 10112233456887775 3444568889999999997532 332 2222 3679999
Q ss_pred HHHHHHcCccCCCccccHHHHHHH-HHHh
Q 012516 214 NAFVQGIGISRSDSLIRLDRLEYH-IREE 241 (462)
Q Consensus 214 ~~f~~~lG~s~~~~~~~~~~l~~~-nr~~ 241 (462)
|=||++.+.-.++..|+++.+... |++.
T Consensus 347 R~~l~~~~~~~~d~~fs~~~~~~~~n~~l 375 (542)
T 3u1f_A 347 KYFLLRESGFSDDGDYSDKNMIARLNGEL 375 (542)
T ss_dssp HHHHHHHCCTTSCCEECHHHHHHHHHHTT
T ss_pred HHHHHhcCcccccccccHHHHHHHhhhHH
Confidence 999988777778889999887543 4433
No 32
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=88.55 E-value=0.49 Score=52.17 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=46.9
Q ss_pred CCCCe-EEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHH
Q 012516 157 LYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 235 (462)
Q Consensus 157 ~~~P~-~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~ 235 (462)
|+.|. +.+++++..+|.||||+.+... || ..+.+ .|.++|+|=|++..+-..++..|+++.+.
T Consensus 326 ~~~Pk~v~~hG~v~~~G~KMSKS~GNvV----------~p-----~d~i~-~ygaDalR~~ll~~~~~~~D~~fs~~~~~ 389 (722)
T 1rqg_A 326 WNLPYDIPANEYLTLEGKKFSTSRNWAI----------WV-----HEFLD-VFPADYLRYYLTTIMPETRDSDFSFSDFK 389 (722)
T ss_dssp BCCCSBCCEECCEEETTEECBTTTTBSC----------BH-----HHHTT-TSCHHHHHHHHHHTCCSSSCEEECHHHHH
T ss_pred CCCCCEEEEeeeEEeCCeeeeeeCCCcC----------CH-----HHHHH-hcCchHHHHHHHhcCCCCCCCccCHHHHH
Confidence 67774 5666777779999999997532 22 23332 58899999999988777788888887653
Q ss_pred H
Q 012516 236 Y 236 (462)
Q Consensus 236 ~ 236 (462)
.
T Consensus 390 ~ 390 (722)
T 1rqg_A 390 V 390 (722)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=86.64 E-value=0.16 Score=51.58 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=45.7
Q ss_pred CCccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCC-----------------Ccccccccc
Q 012516 129 IENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVS-----------------NTVMSKRKL 180 (462)
Q Consensus 129 l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~-----------------g~kLSKR~~ 180 (462)
+.+.+||+.|.|...+....+-|.+.||...|...|.++| .++ |+||||++.
T Consensus 175 ~~~~~~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 175 YMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp HTTCSEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC----------------CBCCSSSG
T ss_pred hcCCCEEeccchHHHHHHHHHHHHHHcCCCCceeeccceeeCCCcccccccccccccccccccccCCCCC
Confidence 4789999999999999999999999999999999888875 566 689999953
No 34
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=83.29 E-value=1.8 Score=48.30 Aligned_cols=97 Identities=12% Similarity=-0.014 Sum_probs=59.8
Q ss_pred cceEeeccccccccHHHHHHH--HHh-CCCCC-eEEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHc
Q 012516 132 ITHSLCTLEFETRRASYFWLL--HAL-GLYQP-YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 206 (462)
Q Consensus 132 ITHviRg~e~l~~t~~q~~l~--~aL-g~~~P-~~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~r 206 (462)
++-.+=|.||+-. -.+..+. .++ |-.+| .++-++. +..+|.|||||.+... +...+.+
T Consensus 545 ~dl~~~G~D~~r~-w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV---------------~p~dli~- 607 (821)
T 1ile_A 545 ADFIAEGIDQTRG-WFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVV---------------DPWDIIR- 607 (821)
T ss_dssp BSBEEEEGGGGGT-HHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCC---------------CHHHHHT-
T ss_pred cccccchhhhhcc-HHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCC---------------CHHHHHH-
Confidence 3334456666432 2222222 222 54443 3333443 5678999999987432 2344444
Q ss_pred CCCHHHHHHHHHHcCccCCCccccHHHHHHHHHHhhhcc
Q 012516 207 GVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKT 245 (462)
Q Consensus 207 G~~peAi~~f~~~lG~s~~~~~~~~~~l~~~nr~~l~~~ 245 (462)
.|.++|+|=|++..+-..++..|+.+.+...+++.+++.
T Consensus 608 ~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl 646 (821)
T 1ile_A 608 KFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTL 646 (821)
T ss_dssp TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHH
T ss_pred HhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHH
Confidence 388999999999988777888999999887545555554
No 35
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=81.55 E-value=0.68 Score=46.49 Aligned_cols=53 Identities=13% Similarity=-0.021 Sum_probs=42.5
Q ss_pred CCccceEeeccccccccHHHHHHHHHhC------CCCCe--EEEEeee-cCCCccccccccc
Q 012516 129 IENITHSLCTLEFETRRASYFWLLHALG------LYQPY--VWEYSRL-NVSNTVMSKRKLN 181 (462)
Q Consensus 129 l~gITHviRg~e~l~~t~~q~~l~~aLg------~~~P~--~~h~~~l-~~~g~kLSKR~~~ 181 (462)
+.+.++|+.|.|...+....+-|.+.|+ +..|. ..|.++| .++|+||||+...
T Consensus 151 ~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n 212 (340)
T 2g36_A 151 IYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGN 212 (340)
T ss_dssp TTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTC
T ss_pred HhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCC
Confidence 4789999999999999999999999875 34666 3345664 6789999999854
No 36
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=80.17 E-value=0.72 Score=46.43 Aligned_cols=54 Identities=15% Similarity=0.032 Sum_probs=44.5
Q ss_pred CCCccceEeeccccccccHHHHHHHHHhC------CCCCeEEEE---eee-cCCC--ccccccccc
Q 012516 128 SIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY---SRL-NVSN--TVMSKRKLN 181 (462)
Q Consensus 128 ~l~gITHviRg~e~l~~t~~q~~l~~aLg------~~~P~~~h~---~~l-~~~g--~kLSKR~~~ 181 (462)
.+.+.+||+.|.|...+....+-|.+.|| +..|...+- ++| .++| +||||+...
T Consensus 144 l~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n 209 (348)
T 2yy5_A 144 LLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKN 209 (348)
T ss_dssp HTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSC
T ss_pred HHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCC
Confidence 34799999999999999999999999986 667887763 443 5777 899999865
No 37
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=79.65 E-value=4 Score=45.38 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=57.9
Q ss_pred ccceEeeccccccccHHHHHHH-HHh-CC-CCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHc
Q 012516 131 NITHSLCTLEFETRRASYFWLL-HAL-GL-YQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 206 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~-~aL-g~-~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~r 206 (462)
.++--+=|.|++-.-..+..+. .++ +. +.| ...|.+++..+|.|||||.+... | ...+.+.
T Consensus 603 p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv----------~-----p~dli~~ 667 (810)
T 1wkb_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVL----------N-----FIDAIEE 667 (810)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCC----------B-----HHHHHHH
T ss_pred CceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcC----------C-----HHHHHHH
Confidence 4555667888865322222222 332 32 224 46677777779999999987532 2 3333332
Q ss_pred CCCHHHHHHHHHHcCccCCCccccHHHHHHH
Q 012516 207 GVTSTSINAFVQGIGISRSDSLIRLDRLEYH 237 (462)
Q Consensus 207 G~~peAi~~f~~~lG~s~~~~~~~~~~l~~~ 237 (462)
|.++|+|=|++..+--.++..|+.+.+...
T Consensus 668 -yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (810)
T 1wkb_A 668 -NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (810)
T ss_dssp -HCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred -cChHHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 779999999987777777788888777554
No 38
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=79.19 E-value=2.9 Score=41.77 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=43.5
Q ss_pred CccceEeeccccccccHHHHHHHHHh----C--CCCCeEEEE---eee-cCCC-ccccccccc
Q 012516 130 ENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYVWEY---SRL-NVSN-TVMSKRKLN 181 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~aL----g--~~~P~~~h~---~~l-~~~g-~kLSKR~~~ 181 (462)
.+.++|+.|.|...+....+-|.+.| | +..|...+- ++| .++| +||||+...
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n 202 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGN 202 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTC
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCC
Confidence 68999999999999999999999876 5 577877765 554 6789 899999865
No 39
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=77.88 E-value=1.2 Score=44.86 Aligned_cols=53 Identities=17% Similarity=0.014 Sum_probs=42.3
Q ss_pred CCccceEeeccccccccHHHHHHHHHhC------CCCCeEE--EEeee-cCCCc-cccccccc
Q 012516 129 IENITHSLCTLEFETRRASYFWLLHALG------LYQPYVW--EYSRL-NVSNT-VMSKRKLN 181 (462)
Q Consensus 129 l~gITHviRg~e~l~~t~~q~~l~~aLg------~~~P~~~--h~~~l-~~~g~-kLSKR~~~ 181 (462)
+.+.++|+.|.|...+....+-|.+.|+ +..|... |.++| .++|+ ||||+...
T Consensus 160 ~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n 222 (351)
T 1yi8_B 160 AFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN 222 (351)
T ss_dssp HHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTC
T ss_pred hcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCC
Confidence 3689999999999999999999998774 4567643 35654 67897 99999865
No 40
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=77.32 E-value=1.3 Score=44.14 Aligned_cols=54 Identities=15% Similarity=0.010 Sum_probs=43.8
Q ss_pred CCCccceEeeccccccccHHHHHHHHHhC------CCCCeEEE---Eeee-cCCC--ccccccccc
Q 012516 128 SIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE---YSRL-NVSN--TVMSKRKLN 181 (462)
Q Consensus 128 ~l~gITHviRg~e~l~~t~~q~~l~~aLg------~~~P~~~h---~~~l-~~~g--~kLSKR~~~ 181 (462)
.+.+.++|+.|.|...+....+-|.+.|| +..|...+ .++| .++| +||||+...
T Consensus 134 l~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n 199 (328)
T 1i6k_A 134 LLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199 (328)
T ss_dssp HTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSC
T ss_pred HHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCC
Confidence 34799999999999999999999999987 55676554 2443 6778 899999875
No 41
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=75.32 E-value=7.3 Score=44.29 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=56.6
Q ss_pred ccceEeeccccccccHHHHHH-HHHh-CC-CCC-eEEEEeeecCCCcccccccccccccccccCCCCCchhhhHHHHHHc
Q 012516 131 NITHSLCTLEFETRRASYFWL-LHAL-GL-YQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 206 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l-~~aL-g~-~~P-~~~h~~~l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~r 206 (462)
.+.-.+=|.|++-.-.-+..+ ..++ +- ..| ...|.+++..+|.||||+.+... +...+.+
T Consensus 603 P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv---------------~p~d~i~- 666 (967)
T 1wz2_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVL---------------NFIDAIE- 666 (967)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCC---------------BHHHHHH-
T ss_pred CCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCC---------------CHHHHHH-
Confidence 345566788876432222222 2332 32 123 46677777679999999987532 2334444
Q ss_pred CCCHHHHHHHHHHcCccCCCccccHHHHHHH
Q 012516 207 GVTSTSINAFVQGIGISRSDSLIRLDRLEYH 237 (462)
Q Consensus 207 G~~peAi~~f~~~lG~s~~~~~~~~~~l~~~ 237 (462)
.|-++|+|=|++..+-..++..|+.+.+...
T Consensus 667 ~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (967)
T 1wz2_A 667 ENGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (967)
T ss_dssp TTCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred HhChHHHHHHHHhCCCCCCCcccCHHHHHHH
Confidence 3889999999887776677777777666543
No 42
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=74.96 E-value=2.6 Score=43.70 Aligned_cols=64 Identities=9% Similarity=-0.000 Sum_probs=44.7
Q ss_pred ccceeeeeecCC-----CccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCC--ccccccccc
Q 012516 118 SYDYAHCIVDSI-----ENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 181 (462)
Q Consensus 118 tY~fA~~VDD~l-----~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g--~kLSKR~~~ 181 (462)
+||+-..--|.. .+-++|..|.|-..+-..=+-|.+.+|...|...+.++| .++| +||||+...
T Consensus 231 AaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~n 302 (432)
T 2ip1_A 231 IATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDT 302 (432)
T ss_dssp HHTTSGGGCTTTTCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGG
T ss_pred HHHHHHhccchhhcccCCCceEEEeccCcHHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCC
Confidence 455555433432 468999999999999888888899999999988888875 6888 899999755
No 43
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=71.18 E-value=3.4 Score=42.79 Aligned_cols=53 Identities=13% Similarity=-0.052 Sum_probs=45.7
Q ss_pred CCccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCc-cccccccc
Q 012516 129 IENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNT-VMSKRKLN 181 (462)
Q Consensus 129 l~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~-kLSKR~~~ 181 (462)
..+.++++.|.|-..|-..-+-|.+.+|..+|...+.|.| .++|+ ||||+...
T Consensus 185 ~l~~~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n 239 (432)
T 1h3f_A 185 AIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDN 239 (432)
T ss_dssp HHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTC
T ss_pred hcCccEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCC
Confidence 3468999999999999999999999999888887787875 67896 99999854
No 44
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=67.43 E-value=19 Score=36.02 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=33.9
Q ss_pred ccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCccccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLN 181 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~kLSKR~~~ 181 (462)
+.++|+-|.|-..+-..=+-|.+.+|-.+|...+.+.| .++|+||||+...
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~n 261 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGN 261 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCC
Confidence 89999999999999999999999999888877777765 5789999999643
No 45
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=67.14 E-value=2.6 Score=44.14 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=45.2
Q ss_pred CccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCC--ccccccccc
Q 012516 130 ENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 181 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g--~kLSKR~~~ 181 (462)
.+-++|..|.|-..+-..-+-|.+.+|...|...+.++| .++| +||||+...
T Consensus 302 ~~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~n 356 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 356 (477)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTT
T ss_pred CCceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCC
Confidence 356999999999999999999999999989998888875 6888 899999754
No 46
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=66.68 E-value=4.8 Score=39.71 Aligned_cols=46 Identities=15% Similarity=0.051 Sum_probs=35.0
Q ss_pred CccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCC-ccccccc
Q 012516 130 ENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN-TVMSKRK 179 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g-~kLSKR~ 179 (462)
.+.++|+.|.|...+. .+.+.+.-++|...|.++| .++| +||||+.
T Consensus 162 ~~~~~v~~G~DQ~~~~----~l~R~i~~~~~~~~~~~~l~~l~G~~KMSKS~ 209 (314)
T 2zp1_A 162 LGVDVAVGGMEQRKIH----MLARELLPKKVVCIHNPVLTGLDGEGKMSSSK 209 (314)
T ss_dssp HTCSEEEEEGGGHHHH----HHHHHHSSSCCEEEEECCCBCTTSSSBCCTTT
T ss_pred hCCCEEEcChhHHHHH----HHHHHhcCCCcEEeeccccccCCcccccCCCC
Confidence 4899999999998755 3444444477888888875 6789 7999995
No 47
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=66.20 E-value=11 Score=38.89 Aligned_cols=51 Identities=8% Similarity=-0.154 Sum_probs=44.8
Q ss_pred ccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCccccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLN 181 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~kLSKR~~~ 181 (462)
+.++++-|.|-..+-..=+-|.+.+|..+|...+.|.| .++|+||||+...
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~n 238 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGG 238 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSS
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCC
Confidence 89999999999999999999999999888877777765 6789999999865
No 48
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=64.72 E-value=3 Score=42.68 Aligned_cols=51 Identities=18% Similarity=0.074 Sum_probs=34.1
Q ss_pred cc-ceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCC--ccccccccc
Q 012516 131 NI-THSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 181 (462)
Q Consensus 131 gI-THviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g--~kLSKR~~~ 181 (462)
+| ++|..|.|-..+-..=+-|.+.+|.++|...+.++| .++| +||||+...
T Consensus 219 di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~n 273 (393)
T 3hv0_A 219 DIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQN 273 (393)
T ss_dssp CCCEEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECCCCC-------------C
T ss_pred CCceecccccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCC
Confidence 45 689999999998888888999999999998888875 5788 799999853
No 49
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=61.86 E-value=29 Score=39.19 Aligned_cols=88 Identities=14% Similarity=-0.004 Sum_probs=52.9
Q ss_pred ccceEeeccccccccHHHHHHHHHh---CCCCC-eEEEEeeec-CCCcccccccccccccccccCCCCCchhhhHHHHHH
Q 012516 131 NITHSLCTLEFETRRASYFWLLHAL---GLYQP-YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 205 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aL---g~~~P-~~~h~~~l~-~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~ 205 (462)
-.+--+=|.|++ +.-.|..+..++ |..++ .++.++.+. .+|.|||||.+... || ..+.+
T Consensus 548 P~Dl~~~G~D~~-r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV----------~P-----~dvi~ 611 (917)
T 1ffy_A 548 PADMYLEGSDQY-RGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI----------VP-----DQVVK 611 (917)
T ss_dssp SBSEEEEEGGGG-TTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCC----------CH-----HHHHH
T ss_pred CceEEEEEeccc-ccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcC----------Ch-----HHHHH
Confidence 355567777875 233444444333 43332 244446655 58999999997532 33 23332
Q ss_pred cCCCHHHHHHHHHHcCccCCCccccHHHHHH
Q 012516 206 RGVTSTSINAFVQGIGISRSDSLIRLDRLEY 236 (462)
Q Consensus 206 rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~ 236 (462)
.|-++|+|=|++. +-..++..|+.+.|..
T Consensus 612 -~yGaDalR~~lls-~~~~~D~~fs~~~l~~ 640 (917)
T 1ffy_A 612 -QKGADIARLWVSS-TDYLADVRISDEILKQ 640 (917)
T ss_dssp -HTCHHHHHHHHHT-SCTTSCEECCHHHHHH
T ss_pred -hCCHHHHHHHHhc-cCCCCCcccCHHHHHH
Confidence 3779999999887 5445666788776544
No 50
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=58.83 E-value=8.4 Score=39.50 Aligned_cols=51 Identities=16% Similarity=-0.007 Sum_probs=43.8
Q ss_pred CccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCC--cccccccc
Q 012516 130 ENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKL 180 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g--~kLSKR~~ 180 (462)
.+.++|..|.|-..+-..=+-|...+|.++|...+.++| .++| +||||+..
T Consensus 242 ~~a~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~ 295 (406)
T 3tze_A 242 GAMCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDP 295 (406)
T ss_dssp TCEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCG
T ss_pred CCCeEEeeccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCC
Confidence 367899999999998888888999999999998887775 5788 69999973
No 51
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=58.66 E-value=6.1 Score=40.35 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=42.5
Q ss_pred cceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCC--ccccccccc
Q 012516 132 ITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 181 (462)
Q Consensus 132 ITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g--~kLSKR~~~ 181 (462)
-++|..|.|-..+-..=+-|.+.+|...|...+.++| .++| +||||+...
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~n 260 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPE 260 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGG
T ss_pred CceeecccchHHHHHHHHHHHHHcCCCCCeeeecccccCCCCCccccccCCCC
Confidence 5789999999988888888899999999988887765 5777 599999854
No 52
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=56.37 E-value=12 Score=42.04 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=41.4
Q ss_pred EEEEee-ecCCCcccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHH
Q 012516 162 VWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 237 (462)
Q Consensus 162 ~~h~~~-l~~~g~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~ 237 (462)
++-++. +..+|.||||+.+... || ..+.+ .|-++|+|=|++..+-..++..|+.+.+...
T Consensus 515 v~~hG~vld~~G~KMSKSlGNvI----------dP-----~dli~-~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~ 575 (862)
T 1gax_A 515 VLLHGLVLDEKGQKMSKSKGNVI----------DP-----LEMVE-RYGADALRFALIYLATGGQDIRLDLRWLEMA 575 (862)
T ss_dssp EEEECCEECTTSCBCCTTTTCCC----------CH-----HHHHH-HHCHHHHHHHHHHHCCTTCCEECCHHHHHHH
T ss_pred EEEeeeEEcCCCCCccccCCCCC----------CH-----HHHHH-HcChHHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 333343 5678999999997532 33 22222 2668999999998877777788888877653
No 53
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=56.33 E-value=28 Score=35.67 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=44.4
Q ss_pred ccceEeeccccccccHHHHHHHHHh-CCCCCeEEEEeee-cCCCccccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLN 181 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aL-g~~~P~~~h~~~l-~~~g~kLSKR~~~ 181 (462)
+.++++-|.|-..|-..=+-|.+.+ +..+|...+.|.| .++|+||||+...
T Consensus 186 ~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~n 238 (420)
T 1jil_A 186 NCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESG 238 (420)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSS
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCC
Confidence 8999999999999999999999999 8877877777775 6789999999853
No 54
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=54.02 E-value=28 Score=35.77 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=42.5
Q ss_pred ccceEeeccccccccHHHHHHHHHh-CCCCCeEEEEeee-cCCCccccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLN 181 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aL-g~~~P~~~h~~~l-~~~g~kLSKR~~~ 181 (462)
+.++++-|.|-..|-..=+-|.+.+ +..+|...+.|.| .++|+||||+...
T Consensus 185 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~n 237 (419)
T 2ts1_A 185 GCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESG 237 (419)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCC
Confidence 8999999999999999999999999 8777877777765 6789999999753
No 55
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=54.01 E-value=4.7 Score=41.24 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=34.0
Q ss_pred cceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCC--ccccccc
Q 012516 132 ITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRK 179 (462)
Q Consensus 132 ITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g--~kLSKR~ 179 (462)
-++|..|.|-..+-..=+-|.+.+|.++|...+.+.| .++| +||||+.
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~ 275 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSS 275 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC-----------
T ss_pred ceEEEeccchHHHHHHHHHHHHHcCCCCceeeccccccCCCCCcccCCCCC
Confidence 6789999999988888888999999999998887775 5788 7999994
No 56
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=52.12 E-value=12 Score=38.16 Aligned_cols=66 Identities=14% Similarity=-0.025 Sum_probs=49.6
Q ss_pred cccccceeeee----ecCCCc--cceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCc-ccccccc
Q 012516 115 IYPSYDYAHCI----VDSIEN--ITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNT-VMSKRKL 180 (462)
Q Consensus 115 ~~PtY~fA~~V----DD~l~g--ITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~-kLSKR~~ 180 (462)
.||.-+=|-.+ +|.+.. =++|-.|.|-..+-..=+-|.+.+|.+.|...+.++| .++|. ||||++.
T Consensus 202 ~YP~LQaaD~~~~~~pdil~~~~a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~KMSKSd~ 275 (386)
T 3hzr_A 202 ASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSD 275 (386)
T ss_dssp HHHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTCTTCCCCCCT
T ss_pred hhHHHHHHHHhhhcchHhhCCCCccccccccchHHHHHHHHHHHHHcCCCCceEeecCeeeCCCCCCccCcCCC
Confidence 36655544333 355432 5788899999998888899999999999988877765 57884 9999953
No 57
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=48.89 E-value=14 Score=36.96 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=42.9
Q ss_pred ccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cC-CC-cccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NV-SN-TVMSKRKL 180 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~-~g-~kLSKR~~ 180 (462)
+.++|+-|.|-..+-..=+-+.+.+|...|...+.++| .+ +| +||||+..
T Consensus 186 ~~~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~ 238 (348)
T 2j5b_A 186 GIDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDP 238 (348)
T ss_dssp CCSEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCG
T ss_pred CCcEEEeccChHHHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCC
Confidence 88999999999988888888899999999988888775 56 46 79999973
No 58
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=46.37 E-value=9 Score=39.63 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=43.1
Q ss_pred ccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCC--ccccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 181 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g--~kLSKR~~~ 181 (462)
+-++|-.|.|-..+-..=+-|.+.+|...|...+.++| .++| +||||+...
T Consensus 256 ~~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~n 309 (437)
T 1r6u_A 256 IQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 309 (437)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSS
T ss_pred CceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCC
Confidence 44888899999988888888889999989988888875 6888 899999754
No 59
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=42.85 E-value=12 Score=38.81 Aligned_cols=48 Identities=15% Similarity=-0.073 Sum_probs=39.5
Q ss_pred eEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCc--cccccccc
Q 012516 134 HSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNT--VMSKRKLN 181 (462)
Q Consensus 134 HviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~--kLSKR~~~ 181 (462)
+|..|.|-..+-..-+-|...||.++|...+.++| .++|. ||||+...
T Consensus 290 ~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~n 340 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPN 340 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGG
T ss_pred eeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCC
Confidence 78899998877777788888999999998877765 57774 99999864
No 60
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=42.51 E-value=17 Score=36.72 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=42.7
Q ss_pred CCccceEeeccccccccHHHHHHHHHhCCC-CCeEEEEeee-cC-CCc-ccccccc
Q 012516 129 IENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRL-NV-SNT-VMSKRKL 180 (462)
Q Consensus 129 l~gITHviRg~e~l~~t~~q~~l~~aLg~~-~P~~~h~~~l-~~-~g~-kLSKR~~ 180 (462)
+.+.++++-|.|-..+-..=+-|.+.+|.. .|...+.++| .+ +|+ ||||+..
T Consensus 198 ~l~ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~ 253 (373)
T 3vgj_A 198 FLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDE 253 (373)
T ss_dssp HTTCSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSST
T ss_pred ccCCcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCC
Confidence 357899999999988888888899999976 6887888875 55 785 9999984
No 61
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=40.42 E-value=11 Score=37.26 Aligned_cols=52 Identities=10% Similarity=-0.135 Sum_probs=38.9
Q ss_pred CccceEeeccccccccHHHHHHHHHhCC------CCCeEEE---Eeee-cCCCccccccccc
Q 012516 130 ENITHSLCTLEFETRRASYFWLLHALGL------YQPYVWE---YSRL-NVSNTVMSKRKLN 181 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~aLg~------~~P~~~h---~~~l-~~~g~kLSKR~~~ 181 (462)
.+.++|.-|.|-..+-..=+-|.+.+|. ..|...+ .++| .++|+||||+...
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n 199 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQN 199 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTC
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCC
Confidence 5889999999988877777777777753 5666544 3444 6789999999854
No 62
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=32.39 E-value=26 Score=34.55 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=41.9
Q ss_pred ccceEeeccccccccHHHHHHHHHhCCCCCeEEEEeee-cCCCccccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLN 181 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aLg~~~P~~~h~~~l-~~~g~kLSKR~~~ 181 (462)
+.+.++=|.|-..+-..-+-|.+.+|..+|...+.|.| .++|+||||+...
T Consensus 191 ~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n 242 (322)
T 2yxn_A 191 GVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGG 242 (322)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTE
T ss_pred CceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCC
Confidence 67766669999999999999999998877776666765 5689999999864
No 63
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=32.17 E-value=26 Score=35.38 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=42.1
Q ss_pred CccceEeeccccccccHHHHHHHHHhCC--------C-CCeEEEEeee-cCCC------------------ccccccc
Q 012516 130 ENITHSLCTLEFETRRASYFWLLHALGL--------Y-QPYVWEYSRL-NVSN------------------TVMSKRK 179 (462)
Q Consensus 130 ~gITHviRg~e~l~~t~~q~~l~~aLg~--------~-~P~~~h~~~l-~~~g------------------~kLSKR~ 179 (462)
.+.++|+-|.|-..+-..=+-|.+.+|. . .|...+.++| .++| +||||+.
T Consensus 179 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~ 256 (375)
T 2cyc_A 179 QGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSK 256 (375)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSC
T ss_pred hCCCeecccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCC
Confidence 6899999999999888888888888887 3 6877787775 5777 8999997
No 64
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=32.13 E-value=13 Score=39.47 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=29.4
Q ss_pred CCcccCCceecc--cCHHHHHHHHHHHHhCCCeEEe
Q 012516 1 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYVD 34 (462)
Q Consensus 1 LGl~wD~~~~QS--~r~~~y~~~a~~Li~~G~AY~c 34 (462)
||+.+|..+++| ++.+..++..++|.++|.+|..
T Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~ 143 (564)
T 3kfl_A 108 MNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143 (564)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 789999766677 4889999999999999999965
No 65
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=31.01 E-value=44 Score=33.63 Aligned_cols=50 Identities=10% Similarity=-0.070 Sum_probs=39.8
Q ss_pred ceEeeccccccccHHHHHHHHHhC----CCCCeEEEEeee-cCCCcccccccccc
Q 012516 133 THSLCTLEFETRRASYFWLLHALG----LYQPYVWEYSRL-NVSNTVMSKRKLNF 182 (462)
Q Consensus 133 THviRg~e~l~~t~~q~~l~~aLg----~~~P~~~h~~~l-~~~g~kLSKR~~~~ 182 (462)
|||=.|.|-..+-..-+-|.+.|| ++.|...|.+.+ .++|.||||+....
T Consensus 210 ~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns 264 (372)
T 3a04_A 210 VVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDS 264 (372)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGG
T ss_pred eecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCc
Confidence 688999998887777777888886 678887777765 57899999998543
No 66
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=28.18 E-value=1e+02 Score=34.68 Aligned_cols=48 Identities=21% Similarity=0.124 Sum_probs=32.7
Q ss_pred ccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHHH
Q 012516 174 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 237 (462)
Q Consensus 174 kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~~ 237 (462)
||||+++... || ..+.++ |-++|+|=|++..+--.++..++.+.++..
T Consensus 639 KMSKSkGNvV----------dP-----~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie~a 686 (880)
T 4arc_A 639 KMSKSKNNGI----------DP-----QVMVER-YGADTVRLFMMFASPADMTLEWQESGVEGA 686 (880)
T ss_dssp ECCTTTTCCC----------CH-----HHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHH
T ss_pred cccCcCCCCC----------CH-----HHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 9999997542 33 333332 789999999998876666666666655443
No 67
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=28.12 E-value=45 Score=36.45 Aligned_cols=52 Identities=13% Similarity=0.031 Sum_probs=42.9
Q ss_pred CCccceEeeccccccccHHHHHHHHHhCCC-CCeEEEEeee-cC-CCc-ccccccc
Q 012516 129 IENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRL-NV-SNT-VMSKRKL 180 (462)
Q Consensus 129 l~gITHviRg~e~l~~t~~q~~l~~aLg~~-~P~~~h~~~l-~~-~g~-kLSKR~~ 180 (462)
+.+.++|.-|.|-..+-..=+-|.+.+|.. .|...+.++| .+ +|+ ||||+..
T Consensus 181 ~~~ad~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~ 236 (690)
T 3p0j_A 181 FLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDP 236 (690)
T ss_dssp HTTCSEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBG
T ss_pred hhCCCEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCC
Confidence 457899999999998888888899999976 5887777775 56 785 9999975
No 68
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=27.33 E-value=26 Score=35.61 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=36.9
Q ss_pred ccceEeeccccccccHHHHHHHHHh-----------------CCCCCeEEEEeee-cCCCccccccccc
Q 012516 131 NITHSLCTLEFETRRASYFWLLHAL-----------------GLYQPYVWEYSRL-NVSNTVMSKRKLN 181 (462)
Q Consensus 131 gITHviRg~e~l~~t~~q~~l~~aL-----------------g~~~P~~~h~~~l-~~~g~kLSKR~~~ 181 (462)
+.++++-|.|-..|-..=+-|.+.+ +..+|...+.++| .++|+||||+...
T Consensus 232 ~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~n 300 (392)
T 1y42_X 232 GVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGN 300 (392)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSS
T ss_pred CccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCC
Confidence 6889999999877766666665554 2246666677765 6789999999753
No 69
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=25.53 E-value=65 Score=23.68 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=20.9
Q ss_pred hhhHHHHHHcCCCHHHHHHHHHHcCccC
Q 012516 197 LMTLAGLRRRGVTSTSINAFVQGIGISR 224 (462)
Q Consensus 197 ~~ti~~lr~rG~~peAi~~f~~~lG~s~ 224 (462)
+.-|..-++.|++.+.|+.|+....-+.
T Consensus 16 l~LI~~Ak~lGlsleEIrefL~l~~~~~ 43 (57)
T 1b0n_B 16 VELMVEAKEANISPEEIRKYLLLNKKSA 43 (57)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhccCC
Confidence 4557888999999999999998765443
No 70
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.58 E-value=72 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.7
Q ss_pred hhhhHHHHHHcCCCHHHHHHHHHHc
Q 012516 196 CLMTLAGLRRRGVTSTSINAFVQGI 220 (462)
Q Consensus 196 r~~ti~~lr~rG~~peAi~~f~~~l 220 (462)
|+..|..||+.|++.+.|+.|+...
T Consensus 5 rL~~I~~lr~lGfsL~eIk~~l~~~ 29 (99)
T 1q08_A 5 RLKFIRHARQLGFSLESIRELLSIR 29 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4667899999999999999999753
No 71
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=21.55 E-value=87 Score=35.09 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=33.9
Q ss_pred cccccccccccccccccCCCCCchhhhHHHHHHcCCCHHHHHHHHHHcCccCCCccccHHHHHH
Q 012516 173 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 236 (462)
Q Consensus 173 ~kLSKR~~~~~v~~~~~~gwddPr~~ti~~lr~rG~~peAi~~f~~~lG~s~~~~~~~~~~l~~ 236 (462)
.|||||++... || ..+.++ |-++|+|=|++..+-..++..++.+.+..
T Consensus 636 ~KMSKSkGNvV----------dP-----~diI~~-yGADalRl~ll~~~~~~~D~~fs~~~v~~ 683 (878)
T 2v0c_A 636 AVMSKSKGNGV----------MV-----GPFVKE-QGADIARITILFAAPPENEMVWTEEGVQG 683 (878)
T ss_dssp EECSGGGTCCC----------BH-----HHHHHH-SCHHHHHHHHHHHSCTTSCEEECHHHHHH
T ss_pred HHhhccCCCcc----------cH-----HHHHHH-cCccHHHHHHhccCCCCCCceeCHHHHHH
Confidence 89999997542 33 233322 77999999999877777777777776544
No 72
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=20.07 E-value=98 Score=24.70 Aligned_cols=29 Identities=14% Similarity=-0.011 Sum_probs=20.4
Q ss_pred eecCCCccceEeeccccccccHHHHHHHH
Q 012516 125 IVDSIENITHSLCTLEFETRRASYFWLLH 153 (462)
Q Consensus 125 VDD~l~gITHviRg~e~l~~t~~q~~l~~ 153 (462)
..+.-..+||+|+|.+...++.++..-.+
T Consensus 46 ~~~~s~~~THlI~~~~~~~~~~K~~~A~~ 74 (107)
T 3l3e_A 46 RRSFDETVTHFIYQGRPNDTNREYKSVKE 74 (107)
T ss_dssp ESSCCTTCCEEECCCCTTCCCHHHHHHHH
T ss_pred eccccCCceEEEecCCCCCCCHHHHHHHH
Confidence 34445789999998877677777655444
Done!