RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012516
(462 letters)
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 1011 bits (2616), Expect = 0.0
Identities = 408/463 (88%), Positives = 432/463 (93%), Gaps = 1/463 (0%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPI E
Sbjct: 326 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEE 385
Query: 61 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD 120
SLKLFEDMR G IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD
Sbjct: 386 SLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD 445
Query: 121 YAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKL 180
YAHCIVDS+ENITHSLCTLEFETRRASY+WLL +LGLYQPYVWEYSRLNV+NTVMSKRKL
Sbjct: 446 YAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLYQPYVWEYSRLNVTNTVMSKRKL 505
Query: 181 NFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD-SLIRLDRLEYHIR 239
N LVT KYVDGWDDP L+TLAGLRRRGVT T+INAF +GIGI+RSD SLIR+DRLE+HIR
Sbjct: 506 NRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHIR 565
Query: 240 EELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIE 299
EELNKTAPRTMVVL+PLKVVITN+ESG ++ LDAKRWPDAQ DD SAFYKVPFS VVYIE
Sbjct: 566 EELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIE 625
Query: 300 HSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKG 359
SDFR+KDSKDYYGLAPGKSVLLRYAFPIKCT+V+L+DD ET++ IRAEYDP KKTKPKG
Sbjct: 626 RSDFRLKDSKDYYGLAPGKSVLLRYAFPIKCTDVVLADDNETVVEIRAEYDPEKKTKPKG 685
Query: 360 VLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHS 419
VLHWVAEPSPGV PL+VEVRLF+KLF SENPAEL+DWL DLNP SK VI AYA PSL
Sbjct: 686 VLHWVAEPSPGVEPLKVEVRLFDKLFLSENPAELEDWLEDLNPQSKEVISGAYAVPSLKD 745
Query: 420 AAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKGGK 462
A VGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDS+ KGGK
Sbjct: 746 AKVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSYGKGGK 788
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 636 bits (1643), Expect = 0.0
Identities = 240/465 (51%), Positives = 297/465 (63%), Gaps = 21/465 (4%)
Query: 7 KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRDRPIAESL 62
++ Y SDYF +LYE AVELI++G AYVD + EEI+EYR E NSP+RDR + E+L
Sbjct: 98 ELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENL 157
Query: 63 KLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYA 122
LFE MR G EG A LR K DM + N NM D + YRI+ H GDKWCIYP YD+A
Sbjct: 158 DLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFA 217
Query: 123 HCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRKLN 181
HCI D+IE ITHSLCTLEFE R Y W+L L + P +E+SRLN++ TVMSKRKL
Sbjct: 218 HCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRLNLTYTVMSKRKLK 277
Query: 182 FLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 241
LV K+VDGWDDP + T++GLRRRG T SI F + IG+++ DS+I + LE IRE+
Sbjct: 278 QLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCIRED 337
Query: 242 LNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHS 301
LN+ APR M VL+PLK+VITN G + L+A P+ D +VPFS +YIE
Sbjct: 338 LNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVPFSRELYIERE 394
Query: 302 DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDP---SKKT--- 355
DF + K Y+ L PGK V LR A+ IKC EV+ D I I YDP S
Sbjct: 395 DFMEEPPKKYFRLVPGKEVRLRNAYVIKCEEVV-KDADGNITEIHCTYDPDTLSGNPADG 453
Query: 356 -KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAE 414
K KG +HWV+ + + EVRL+++LF NPA D+L LNPDS V+ + + E
Sbjct: 454 RKVKGTIHWVSAA----HAVPAEVRLYDRLFTVPNPAAGKDFLDFLNPDSLVIK-QGFVE 508
Query: 415 PSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPK 459
PSL A DRFQFER GYF DKDSTP KLVFNRTV L+DS+ K
Sbjct: 509 PSLADAKPEDRFQFEREGYFCADKDSTPGKLVFNRTVGLRDSWAK 553
>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases [Protein synthesis, tRNA
aminoacylation].
Length = 522
Score = 479 bits (1235), Expect = e-167
Identities = 225/471 (47%), Positives = 297/471 (63%), Gaps = 24/471 (5%)
Query: 1 MGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRD 55
+G++ KI Y+SDYF ELY A ELI++G AYVD TPEEI+EYR + NSP+RD
Sbjct: 62 LGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRD 121
Query: 56 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI 115
R I E+L LFE MR+G+ +EGKA LR K DM + M D +AYRIKF PH G KWCI
Sbjct: 122 RSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKWCI 181
Query: 116 YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNTV 174
YP YD+ HCI D++ENITHSLCTLEF+ R Y W+L + ++ +P +E+SRLN+ TV
Sbjct: 182 YPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGTV 241
Query: 175 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 234
+SKRKL LV +K+V GWDDP + T++GLRRRG T SI F IG+++ D+ I + RL
Sbjct: 242 LSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRL 301
Query: 235 EYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSN 294
E IRE+LN+ APR M V++P++VVI N+ + P+ +VPF+N
Sbjct: 302 ESCIREDLNENAPRAMAVIDPVEVVIENLSDEYEL----ATIPNHPNTPEFGERQVPFTN 357
Query: 295 VVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYD---- 350
YI+ +DFR + +K Y L GK V LR A+ IK E + D I I YD
Sbjct: 358 EFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAAGKITTIFCTYDNKTL 416
Query: 351 ---PSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVV 407
P+ K KGV+HWV + E RL+++LF NP DD+LS +NP+S +V
Sbjct: 417 GKEPADGRKVKGVIHWV----SASSKYPTETRLYDRLFKVPNPGAPDDFLSVINPES-LV 471
Query: 408 IPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 457
I + + E SL A RFQFER GYF +D K+ST EK+VFNRTV+LKD+
Sbjct: 472 IKQGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVVFNRTVSLKDAT 522
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 487 bits (1255), Expect = e-166
Identities = 207/476 (43%), Positives = 280/476 (58%), Gaps = 23/476 (4%)
Query: 1 MGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRD 55
+G++ + Y SDYF+ +Y A +LI+ G AYVD + EEI+E R E SP+RD
Sbjct: 93 LGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRD 152
Query: 56 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI 115
R + E+L LF MR G +G LR K DM + N + D + YRI+ H GD+WCI
Sbjct: 153 RSVEENLDLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCI 212
Query: 116 YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY--QPYVWEYSRLNVSNT 173
YP YD+AH + D+IE +THS+CTLEFE RA Y W+L LG + +P +E++RL + T
Sbjct: 213 YPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWPPRPRQYEFARLALGYT 272
Query: 174 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 233
VMSKRKL LV YV GWDDP + T+AG RRRGVT +I F IG+++++S + +
Sbjct: 273 VMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGV 332
Query: 234 LEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFS 293
LE+ IR++LN+ APR M VL+PLKVVI N+ +G + LD WP + S KVPF+
Sbjct: 333 LEFAIRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPHDVPKEGSR--KVPFT 390
Query: 294 NVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK 353
+YIE DF K + L PG+ V LR A+ I+C EV+ D + +R YDP
Sbjct: 391 RELYIERDDFSEDPPKGFKRLTPGREVRLRGAYIIRCDEVV-RDADGAVTELRCTYDPES 449
Query: 354 KT------KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELD-DWLSDLNPDSKV 406
K GV+HWV+ L EVRL+++LF P D D+L LNPDS
Sbjct: 450 AKGEDTGRKAAGVIHWVSAKH----ALPAEVRLYDRLFKVPQPEAADEDFLEFLNPDSLR 505
Query: 407 VIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 461
V + EP++ R+QFER GYF D DS P+ LVFNR +TLKD++
Sbjct: 506 VA-QGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDALVFNRIITLKDTWGARA 560
>gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
Length = 574
Score = 459 bits (1183), Expect = e-158
Identities = 212/463 (45%), Positives = 308/463 (66%), Gaps = 15/463 (3%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
MGW+P +T++SDYF +L+E AV+LI+ G AYVDH TP+E+K+ RE++ +SPWR+R + E
Sbjct: 113 MGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRNRSVEE 172
Query: 61 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD 120
+L LFE MR GR EG+ATLR+K DM++DN NM D IAYR+K+ HPHA DKWCIYPSYD
Sbjct: 173 NLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYD 232
Query: 121 YAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKL 180
+ HC++DS+E+I +SLCTLEFETRR SYFWLL L L++P+VWE+SRLNV+ +++SKRK+
Sbjct: 233 FTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSKRKI 292
Query: 181 NFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240
N LV V G+DDP L+TLAG+RRRG T +IN F + +GI+RS ++I++ LE +RE
Sbjct: 293 NVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLRE 352
Query: 241 ELNKTAPRTMVVLNPLKVVITNMESG-TIMHLDAKRWPDAQADDASAFYKVPFSNVVYIE 299
+L++ R ++V++P+KVV+ N + + R P+ + KV F++ Y++
Sbjct: 353 DLDERCERRLMVIDPIKVVVDNWKGEREFECPNHPRKPELGSR------KVMFTDTFYVD 406
Query: 300 HSDFRMKDS-KDYYGLAPGKSVL-LRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKP 357
SDFR +D+ +YGLAPG V+ L+Y+ + C + + + I + D +K KP
Sbjct: 407 RSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFEVDAAGQPSV-IHVDIDFERKDKP 465
Query: 358 KGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSL 417
K + WV+ P VEVRL+ L + A ++L ++ DS+VV YAE +
Sbjct: 466 KTNISWVSA--TACTP--VEVRLYNALLKDDRAAIDPEFLKFIDEDSEVVS-HGYAEKGI 520
Query: 418 HSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 460
+A + Q ER GYF VD D+ P+ LV NR + L++ K
Sbjct: 521 ENAKHFESVQAERFGYFVVDPDTRPDHLVMNRVLGLREDKEKA 563
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 307 bits (788), Expect = e-102
Identities = 105/252 (41%), Positives = 134/252 (53%), Gaps = 10/252 (3%)
Query: 1 MGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM--NSPWRDRP 57
+G + K Y SD F Y+ A ELI +G AYV TPEE++E RE++ SP R R
Sbjct: 63 LGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERPRY 122
Query: 58 IAESLKLFEDM-RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP---HPHAGDKW 113
E L+LFE+ R G E GKATLR K M++ + M DL+ RIKF P H G KW
Sbjct: 123 DEECLRLFEEEMRKGEAEGGKATLRFKIPMESP-YVMRDLVRGRIKFEPSALHDRTGLKW 181
Query: 114 CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSN 172
YP+YD+A I D+I ITH L E W+ ALG P++ EY RLN+
Sbjct: 182 DGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLNLDG 241
Query: 173 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL- 231
T +SKRKL+ V V GW DP L LRRRG T I F + +S L R+
Sbjct: 242 TKLSKRKLSLSVFISQVKGWGDPPEALLNFLRRRGWTPEGIREFFTREELIKSFDLNRVS 301
Query: 232 DRLEYHIREELN 243
LE R++L+
Sbjct: 302 KSLEAFDRKKLD 313
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic
core domain. These enzymes attach Gln to the appropriate
tRNA. Like other class I tRNA synthetases, they
aminoacylate the 2'-OH of the nucleotide at the 3' end
of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. GlnRS contains
the characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 238
Score = 249 bits (637), Expect = 1e-80
Identities = 93/143 (65%), Positives = 110/143 (76%)
Query: 106 HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 165
H GDKWCIYP+YD+AH IVDSIE ITHSLCTLEFE RR SY+WL AL LY+P+ WE+
Sbjct: 96 HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEF 155
Query: 166 SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 225
SRLN++ TVMSKRKL LV YVDGWDDP L TL GLRRRGVT +I F+ G+S++
Sbjct: 156 SRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKA 215
Query: 226 DSLIRLDRLEYHIREELNKTAPR 248
DS I D+LE +R++LN TAPR
Sbjct: 216 DSTIDWDKLEACVRKDLNPTAPR 238
Score = 71.1 bits (175), Expect = 4e-14
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 44
+G +P+K+TY SDYF +LYE A +LI++G AYV H+T ++ Y
Sbjct: 63 LGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYVHHRTGDKWCIY 106
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 241 bits (616), Expect = 2e-74
Identities = 122/441 (27%), Positives = 170/441 (38%), Gaps = 58/441 (13%)
Query: 8 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM------NSPWRDRPIAES 61
Y S+ F YE A +LI +G AYV + TPEE++E RE + S RD +
Sbjct: 79 PYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERN 135
Query: 62 LKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP-HPH-AGDKWCIYPSY 119
L LFE M + E G A +R+K M + DL+ RI F P HP ++ YP+Y
Sbjct: 136 LTLFEKMAD-LGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTY 194
Query: 120 DYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKR 178
++A + D + ITH L + WL ALG P L N +SKR
Sbjct: 195 NFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDGKKLSKR 254
Query: 179 KLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 238
K + V+GW P L L L RG +I F GI D I
Sbjct: 255 KGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFD 314
Query: 239 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYI 298
R++L+ PR M V P++VVI N++ + K ++ I
Sbjct: 315 RKKLDWLNPRYMRVD-PVEVVIENLKPHLEEEGATLPLNPEMGERVVPLTK---ETLIEI 370
Query: 299 EHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPK 358
E DF + + V L+ + EV+ D AE + +
Sbjct: 371 ERLDF--------FFFEDKEEVRLKRLANVIVAEVLEKD---------AEGLITSDWTKE 413
Query: 359 GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLH 418
++HWV +LF + P L P +V + Y EP L
Sbjct: 414 NIIHWVKA--------------VARLFGVKGP--------KLFPPLRVALTGGYVEPELA 451
Query: 419 SAAV--GDRFQFERLGYFAVD 437
G QFERLGY D
Sbjct: 452 DTIELLGKEVQFERLGYALAD 472
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 240 bits (615), Expect = 6e-72
Identities = 139/449 (30%), Positives = 235/449 (52%), Gaps = 38/449 (8%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
+G + +TYTSDYF +L E+A +LI+ G AYVD E++++ R + S R+ + E
Sbjct: 275 LGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEE 334
Query: 61 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD 120
+L+L+++M G + +R K DMQ+ N ++ D + YR TPH G K+ +YP+YD
Sbjct: 335 NLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYD 394
Query: 121 YAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKL 180
+A VD++E +TH+L + E+ R A Y+ +L +GL + ++WE+SRLN T++SKRKL
Sbjct: 395 FACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKL 454
Query: 181 NFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI---GISRSDSLIRLDRLEYH 237
+ V N V+GWDDP T+ G+ RRG+ I A Q I G S++ +L+ D+L
Sbjct: 455 QWFVDNGKVEGWDDPRFPTVQGIVRRGLK---IEALKQFILSQGASKNLNLMEWDKLWTI 511
Query: 238 IREELNKTAPRTMVVLNPLKVVITNMESG-----TIMHLDAKRWPDAQADDASAFYKVPF 292
++ ++ PR VL +V++T + G + K++ A A+ F
Sbjct: 512 NKKIIDPVCPRHTAVLKEGRVLLT-LTDGPETPFVRIIPRHKKYEGA-GKKATT-----F 564
Query: 293 SNVVYIEHSDFRMKDSKDYYGLAPGKSV-LLRYAFPIKCTEVILSDDKETILHIRAEYDP 351
+N ++++++D ++ G+ V L+ + I + I D+ + + E
Sbjct: 565 TNRIWLDYADAEA--------ISEGEEVTLMDWGNAI--IKEITKDEGGAVTALSGELHL 614
Query: 352 S---KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVI 408
K TK K L W+ + + V VE F+ L + E D++L LNP +K
Sbjct: 615 EGSVKTTKLK--LTWLPDTNELVPLSLVE---FDYLITKKKLEEDDNFLDVLNPCTKKET 669
Query: 409 PEAYAEPSLHSAAVGDRFQFERLGYFAVD 437
A + ++ + G+ Q ER GY+ D
Sbjct: 670 A-ALGDSNMRNLKRGEIIQLERKGYYRCD 697
>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional.
Length = 601
Score = 235 bits (600), Expect = 7e-71
Identities = 156/450 (34%), Positives = 237/450 (52%), Gaps = 39/450 (8%)
Query: 9 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDM 68
TY+SDY +YE A ELI++G AY D EE+++ R + + +RD + E+ +L+ +M
Sbjct: 123 TYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEM 182
Query: 69 RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS 128
+ G E + LR K + N+N M D + YR+ TPH G K+ YP+YD+ I+DS
Sbjct: 183 KKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDS 242
Query: 129 IENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKY 188
+E +TH+L T E+ R Y+W ALG+ +P V ++SRLN+ +VMSKRKL LV
Sbjct: 243 VEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYSVMSKRKLTQLVDTHV 302
Query: 189 VDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 248
VDGWDDP T+ L RRG+ ++ FVQ G+S++ + + +L Y + L+ + PR
Sbjct: 303 VDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDPSVPR 362
Query: 249 TMVVLNPLKVVIT-----NMESG-TIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSD 302
VV N LKV T ++E+ ++H K+ PD +YK S+V+++
Sbjct: 363 YTVVSNTLKVRCTVEGQIHLEACEKLLH---KKVPDM---GEKTYYK---SDVIFL---- 409
Query: 303 FRMKDSKDYYGLAPGKSVLLR-----YAFPIKCT-EVILSDDKETILHIRAEYDPSKKTK 356
D++D L G V L Y I+ + E L D + +LH+ + KKTK
Sbjct: 410 ----DAEDVALLKEGDEVTLMDWGNAYIKNIRRSGEDALITDADIVLHLEGDV---KKTK 462
Query: 357 PKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPS 416
K L WV E SP +E+ ++ L + P + + P +K E Y E +
Sbjct: 463 FK--LTWVPE-SP--KAEVMELNEYDHLLTKKKPDPEESIDDIIAPVTKYT-QEVYGEEA 516
Query: 417 LHSAAVGDRFQFERLGYFAVDKDSTPEKLV 446
L GD Q ER GY+ VD TP+K++
Sbjct: 517 LSVLKKGDIIQLERRGYYIVDDV-TPKKVL 545
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 215 bits (551), Expect = 6e-64
Identities = 125/452 (27%), Positives = 201/452 (44%), Gaps = 59/452 (13%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
+G + ++ SD + YE A +LI G AYV PEE KE R+ P RD+ E
Sbjct: 165 LGVKWDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEE 224
Query: 61 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD 120
+L+L+E M +G +EG+A +R+K D+++ N ++ D +A+RI TPHP GDK+ ++P+Y+
Sbjct: 225 NLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYN 284
Query: 121 YAHCIVDSIENITHSLCTLEFE--TRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKR 178
+A + D + +TH L + T + Y + G P Y RL + V+S
Sbjct: 285 FAVAVDDHLLGVTHVLRGKDHIDNTEKQRY--IYDYFGWEYPETIHYGRLKIEGFVLSTS 342
Query: 179 KLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 238
K+ + GWDDP L TL LRRRG+ +I + +G+ +D+ I + L
Sbjct: 343 KIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAIN 402
Query: 239 REELNKTAPRTMVVLNPLKVVITNMESGTI---MHLDAKRWPDAQADDASAFYKVPFSNV 295
R+ ++ A R V +P+++ I E +H PD ++P
Sbjct: 403 RKLIDPIANRYFFVRDPVELEIEGAEPLEAKIPLH------PD---RPERGEREIPVGGK 453
Query: 296 VYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKT 355
VY+ D A GK V L F ++ I + + + + ++K
Sbjct: 454 VYVSSDDLE----------AEGKMVRLMDLFNVE----ITGVSVDKARYHSDDLEEARKN 499
Query: 356 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEP 415
K ++ WV E V VR+ L PD + E AEP
Sbjct: 500 KAP-IIQWVPEDES------VPVRV-------------------LKPDGGDI--EGLAEP 531
Query: 416 SLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 447
+ V D QFER G+ +D +++V
Sbjct: 532 DVADLEVDDIVQFERFGFVRIDS-VEDDEVVA 562
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 214 bits (546), Expect = 2e-63
Identities = 105/446 (23%), Positives = 182/446 (40%), Gaps = 53/446 (11%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
+G + ++ Y SD + Y+ +LI G AYV PEE +E R + RDR + E
Sbjct: 155 LGVKWDEVVYQSDRIETYYDYTRKLIEMGKAYVCDCRPEEFRELRNRGEACHCRDRSVEE 214
Query: 61 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD 120
+L+ +E+M G+ E G +R+K D+++ N + D + +RI TPHP GDK+ +YP+ D
Sbjct: 215 NLERWEEMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRIVKTPHPRTGDKYRVYPTMD 274
Query: 121 YAHCIVDSIENITHSLCTLEF--ETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKR 178
++ I D + +TH L + R+ Y + + W +++ + +
Sbjct: 275 FSVAIDDHLLGVTHVLRGKDHIDNRRKQEYIYRYFGWEPPEFIHWGRLKIDDVRALSTSS 334
Query: 179 KLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 238
++ +Y GWDDP L TL +RRRG+ +I F+ IG+ +D + +
Sbjct: 335 ARKGILRGEYS-GWDDPRLPTLRAIRRRGIRPEAIRKFMLSIGVKINDVTMSWKNIYALN 393
Query: 239 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYI 298
R+ +++ A R + NP+K+ I + + P + +Y+
Sbjct: 394 RKIIDEEARRYFFIWNPVKIEIVGLPEPKRVER-----PLHPDHPEIGERVLILRGEIYV 448
Query: 299 EHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPK 358
D + V L A + ++ L E + R K K
Sbjct: 449 PKDDLEEGV----------EPVRLMDAVNVIYSKKELRYHSEGLEGAR------KLGKSI 492
Query: 359 GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLH 418
+HW+ ++V+V + PD+ +V E E
Sbjct: 493 --IHWLPAKD----AVKVKV---------------------IMPDASIV--EGVIEADAS 523
Query: 419 SAAVGDRFQFERLGYFAVDKDSTPEK 444
VGD QFER G+ +D
Sbjct: 524 ELEVGDVVQFERFGFARLDSADKDGM 549
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 211 bits (537), Expect = 2e-62
Identities = 132/442 (29%), Positives = 223/442 (50%), Gaps = 27/442 (6%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
+ +P +++TSDYF+ + A+ LI G AY+D EE+K+ R + S R++ E
Sbjct: 73 IEIKPDSVSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEE 132
Query: 61 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD 120
+L++F++M +G+ E G LR K DMQ+DN + D + +R TPH +G + YP+YD
Sbjct: 133 ALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYD 192
Query: 121 YAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKL 180
A IVDSIE +TH+L T E++ R A +FW+ ALGL +P + ++R+N NTV+SKRKL
Sbjct: 193 LACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTVLSKRKL 252
Query: 181 NFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY--HI 238
+ V N +V GWDD T+ G+ RRG+ ++ F+ G SR ++ LD ++
Sbjct: 253 TWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASR--RVVNLDWAKFWAEN 310
Query: 239 REELNKTAPRTMVV--LNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVV 296
++E++K A R M + + + +TN + D + K P
Sbjct: 311 KKEIDKRAKRFMAIDKADHTALTVTNADEEA----------DFAFSETDCHPKDPGFGKR 360
Query: 297 YIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTK 356
+ D + + D + G+ ++L I+ +++ D E ++ +KK
Sbjct: 361 AMRICDEVLLEKADTEDIQLGEDIVLLRWGVIEISKI--DGDLEGHFIPDGDFKAAKKK- 417
Query: 357 PKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPS 416
+ W+A+ S + + E F+ L E E D + +NPD+ + +
Sbjct: 418 ----ISWIADVSDNIPVVLSE---FDNLIIKEKLEEDDKFEDFINPDTLAET-DVIGDAG 469
Query: 417 LHSAAVGDRFQFERLGYFAVDK 438
L + D Q ER G++ VD+
Sbjct: 470 LKTLKEHDIIQLERRGFYRVDR 491
>gnl|CDD|217810 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q),
anti-codon binding domain. Other tRNA synthetase
sub-families are too dissimilar to be included. This
family includes only glutamyl and glutaminyl tRNA
synthetases. In some organisms, a single glutamyl-tRNA
synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 174
Score = 179 bits (457), Expect = 1e-54
Identities = 77/195 (39%), Positives = 102/195 (52%), Gaps = 24/195 (12%)
Query: 246 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRM 305
APR M VL+P+KVVI N G + P + KVPFS +YIE DF+
Sbjct: 1 APRYMAVLDPVKVVIENYPEGEEEEAEVPNHPK---NPELGTRKVPFSREIYIEREDFK- 56
Query: 306 KDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDP---SKKTKPKGVLH 362
L PG+ V L A+ IK TEV+ D+ + + YD K KG++H
Sbjct: 57 -------RLKPGEEVRLMGAYNIKVTEVV-KDEDGNVTELHCTYDGDSLGGARKVKGIIH 108
Query: 363 WVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAV 422
WV+ + + EVRL+++LF E+ D+L LNPDS VI E AEP+L + V
Sbjct: 109 WVSAD----DAVPAEVRLYDRLFKDEDD---FDFL--LNPDSLKVITEGLAEPALANLKV 159
Query: 423 GDRFQFERLGYFAVD 437
GD QFER+GYF VD
Sbjct: 160 GDIVQFERIGYFRVD 174
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of
non-discriminating glutamyl-tRNA synthetase.
Non-discriminating Glutamyl-tRNA synthetase (GluRS)
cataytic core domain. These enzymes attach Glu to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. It contains the
characteristic class I HIGH and KMSKS motifs, which are
involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 240
Score = 86.3 bits (214), Expect = 3e-19
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 106 HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFE--TRRASYFWLLHALGLYQPYVW 163
HP G K+ ++P+ ++A + D + +TH L + T + Y + G P
Sbjct: 98 HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY--IYEYFGWEYPETI 155
Query: 164 EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 223
+ RL + +S K+ + + +GWDDP L TL LRRRG+ +I F+ +G+
Sbjct: 156 HWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVK 215
Query: 224 RSDSLIRLDRLEYHIREELNKTAPR 248
++D+ I + L R+ ++ A R
Sbjct: 216 QTDATISWENLYAINRKLIDPRANR 240
Score = 33.1 bits (76), Expect = 0.22
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQT 37
+G + ++ SD + YE A +LI G AYV +T
Sbjct: 65 LGVKWDEVVIASDRIELYYEYARKLIEMGGAYVHPRT 101
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and
glutaminyl-tRNA synthetase. Glutamyl-tRNA
synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Glu or Gln,
respectively, to the appropriate tRNA. Like other class
I tRNA synthetases, they aminoacylate the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. These enzymes function as monomers. Archaea,
cellular organelles, and some bacteria lack GlnRS. In
these cases, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme. The discriminating form of GluRS
differs from GlnRS and the non-discriminating form of
GluRS in their C-terminal anti-codon binding domains.
Length = 230
Score = 81.7 bits (202), Expect = 9e-18
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 115 IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVS-NT 173
YP Y++ H + D++ ITH L + WL ALG P + + RL + T
Sbjct: 93 GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGT 152
Query: 174 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD--SLIRL 231
+SKRKLN TL LRRRG ++ ++ IG S+ D L L
Sbjct: 153 KLSKRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTL 196
Query: 232 DRLEYHIREELNKTAPRT 249
+ + E +A T
Sbjct: 197 EEMIAAFSVERVNSADAT 214
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 41.6 bits (99), Expect = 7e-04
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 22/84 (26%)
Query: 14 YFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM--------NSPWRDRPIAE 60
Y Q ++Y E A +L+ G AY + TPEE++ RE++ + RD E
Sbjct: 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEE 141
Query: 61 SLKLFEDMRNGRIEEG-KATLRMK 83
R+ G +R K
Sbjct: 142 VAA--------RLAAGEPPVIRFK 157
>gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase;
Provisional.
Length = 433
Score = 36.9 bits (86), Expect = 0.019
Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--KKMNSPWRDRPI 58
G K+ Y S+ + ++A +L+ A+ + EE++ +E K P+R
Sbjct: 61 FGISWDKLVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGT 120
Query: 59 AESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIY-- 116
E+L+ +++ N +R+K+ +F D I + F P D + I
Sbjct: 121 CENLED-DEVLN---CNKPFVVRLKKPNHTMSFT--DAIKGEVSF--EPDEIDSFVILRA 172
Query: 117 ---PSYDYAHCIVDSIENIT 133
P+Y++A + D + +I+
Sbjct: 173 DKTPTYNFACAVDDMLYDIS 192
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 34.1 bits (78), Expect = 0.030
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 126 VDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNTVMSKRK 179
+SIE S+C +F+ R Y W+ + L P E RLN+ TVMSKRK
Sbjct: 52 KESIEED-ISVCGEDFQQNRELYRWVKDNITLPVDPEQVELPRLNLETTVMSKRK 105
>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
The glutamyl-tRNA synthetases of the eukaryotic cytosol
and of the Archaea are more similar to glutaminyl-tRNA
synthetases than to bacterial glutamyl-tRNA synthetases.
This model models just the bacterial and mitochondrial
forms of the enzyme. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases may act on both tRNA(gln) and tRNA(glu).
This model is highly specific. Proteins with positive
scores below the trusted cutoff may be fragments rather
than full-length sequences [Protein synthesis, tRNA
aminoacylation].
Length = 470
Score = 33.9 bits (78), Expect = 0.18
Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 12/139 (8%)
Query: 4 EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLK 63
P+ + D +++ + EL+ G AY + + E ++ RE++ + R
Sbjct: 70 GPYYQSQRLDIYKKYAK---ELLEEGLAYRCYCSKERLERLREEQKANKETPRYDRHCRN 126
Query: 64 LFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIY-----P 117
L + + +G +R K Q + D + I F D + I P
Sbjct: 127 LHNEEIENALAKGIPPVVRFKIP-QEGVVSFNDQVRGEITFQ--NSELDDFVILKSDGSP 183
Query: 118 SYDYAHCIVDSIENITHSL 136
+Y++A + D + ITH +
Sbjct: 184 TYNFAVVVDDYLMKITHVI 202
>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 32.4 bits (74), Expect = 0.49
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 364 VAEP-SPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAA 421
V P SP NPL AEL+ WL L D VVI EAY E S +
Sbjct: 174 VVHPNSPTGNPL--------------TAAELE-WLRSLPEDILVVIDEAYFEFSQTTLV 217
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 32.4 bits (74), Expect = 0.55
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 20 ELAVELIRRGHAYV------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 73
+LAVE IR G A + + E + + S + P S E R+G +
Sbjct: 170 DLAVEAIRSGKADIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDET-RDGFV 228
Query: 74 E-EGKATLRMKQD 85
E EG L +++
Sbjct: 229 EAEGAGVLVLERA 241
>gnl|CDD|233183 TIGR00916, 2A0604s01, protein-export membrane protein, SecD/SecF
family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY
proteins form the protein translocation appartus in
prokaryotes. This family is specific for the SecD and
SecF proteins [Protein fate, Protein and peptide
secretion and trafficking].
Length = 192
Score = 31.1 bits (71), Expect = 0.75
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 208 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRT 249
+T I + IG S D+++ DR IREEL K RT
Sbjct: 98 LTLPGIAGLLTIIGYSVDDTVVIFDR----IREELRKYKGRT 135
>gnl|CDD|191653 pfam06962, rRNA_methylase, Putative rRNA methylase. This family
contains a number of putative rRNA methylases. Note
that many family members are hypothetical proteins.
Length = 138
Score = 30.3 bits (69), Expect = 0.85
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 11 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 42
T + ++ VELI H +D PE +K
Sbjct: 15 TKEKLEQAGLSEVELILDSHENIDEYIPEPVK 46
>gnl|CDD|233213 TIGR00966, 3a0501s07, protein-export membrane protein SecF. This
bacterial protein is always found with the homologous
protein-export membrane protein SecD. In numerous
lineages, this protein occurs as a SecDF fusion protein
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 246
Score = 31.1 bits (71), Expect = 0.89
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 208 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGT 267
V T++ A + IG S +D+++ DR IRE L K + + I S T
Sbjct: 149 VNLTTVAALLTIIGYSINDTVVVFDR----IRENLRKY--TRKTFTEVINLSINQTLSRT 202
Query: 268 IM 269
I
Sbjct: 203 IN 204
>gnl|CDD|218255 pfam04769, MAT_Alpha1, Mating-type protein MAT alpha 1. This
family includes Saccharomyces cerevisiae mating type
protein alpha 1. Mat alpha 1 is a transcription
activator which activates mating-type alpha-specific
genes. MAT alpha 1 and MCM 1 bind cooperatively to PQ
elements upstream of alpha-specific genes. Alpha 1
interacts in vivo with STE12, linking expression of
alpha-specific genes to the alpha-pheromone (pfam04648)
response pathway.
Length = 200
Score = 30.5 bits (69), Expect = 1.4
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 351 PSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPE 410
P K+ + W A+P+ + L +V + + A L+ +L+ P + P
Sbjct: 65 PQKEASNFITILWQADPNKNLWSLMAKVYSSIRDQLGKKKAPLNQFLAFACPHMGMPDPS 124
Query: 411 AYAE 414
AY E
Sbjct: 125 AYLE 128
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 31.0 bits (71), Expect = 1.6
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 1 MGWEPFKITYTSDYFQELYELAVE-LIRRGHAYVDHQTPEEIKEYREKKMNS---PWRDR 56
+G + SD F + Y+ A E L G Y ++TPEE++ R+ +++ P DR
Sbjct: 64 LGINWDRTFRQSDRF-DRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDR 122
Query: 57 PIAESLKLFEDMRNGRIEEGKA 78
+LKL E+ + EG+
Sbjct: 123 ---AALKLTEEEKAALEAEGRK 141
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.4 bits (68), Expect = 3.2
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 282 DDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV----ILSD 337
DD + +P + V + H +FR+ +++ G G+ L R AF + E+ I D
Sbjct: 980 DDNRELF-IPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSR-AFRNRFLEMHFDDIPED 1037
Query: 338 DKETILHIRAEYDPS 352
+ E ILH R E PS
Sbjct: 1038 ELEEILHGRCEIAPS 1052
>gnl|CDD|116082 pfam07461, NADase_NGA, Nicotine adenine dinucleotide glycohydrolase
(NADase). This family consists of several bacterial
nicotine adenine dinucleotide glycohydrolase (NGA)
proteins which appear to be specific to Streptococcus
pyogenes. NAD glycohydrolase (NADase) is a potential
virulence factor. Streptococcal NADase may contribute to
virulence by its ability to cleave beta-NAD at the
ribose-nicotinamide bond, depleting intracellular NAD
pools and producing the potent vasoactive compound
nicotinamide.
Length = 446
Score = 29.7 bits (66), Expect = 3.5
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 376 VEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERL 431
+E +FEK F D W++D D + + YA+ ++ +AV R ++ R+
Sbjct: 195 IERDIFEKKFKEIK----DKWVTDKQADEFIETADKYADKAIQMSAVASRAEYYRM 246
>gnl|CDD|233280 TIGR01128, holA, DNA polymerase III, delta subunit. DNA polymerase
III delta (holA) and delta prime (holB) subunits are
distinct proteins encoded by separate genes. The delta
prime subunit (holB) exhibits sequence homology to the
tau and gamma subunits (dnaX), but the delta subunit
(holA) does not demonstrate this same homology with
dnaX. The delta, delta prime, gamma, chi and psi
subunits form the gamma complex subassembly of DNA
polymerase III holoenzyme, which couples ATP to assemble
the ring-shaped beta subunit around DNA forming a DNA
sliding clamp [DNA metabolism, DNA replication,
recombination, and repair].
Length = 302
Score = 29.1 bits (66), Expect = 4.4
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 376 VEVRLFEKLFNSENPAELDDWLSDLNPDSKVVI 408
VE+R E ++ L+++L++ PD+ ++I
Sbjct: 50 VELRNPEGKPGAKGLKALEEYLANPPPDTLLLI 82
>gnl|CDD|236088 PRK07757, PRK07757, acetyltransferase; Provisional.
Length = 152
Score = 27.9 bits (63), Expect = 8.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 428 FERLGYFAVDKDSTPEK 444
FE+LG+ VDK++ P+K
Sbjct: 112 FEKLGFREVDKEALPQK 128
>gnl|CDD|143474 cd07322, PriL_PriS_Eukaryotic, Eukaryotic core primase: Large
subunit, PriL. Primases synthesize the RNA primers
required for DNA replication. Primases are grouped into
two classes, bacteria/bacteriophage and
archaeal/eukaryotic. The proteins in the two classes
differ in structure and the replication apparatus
components. Archaeal/eukaryotic core primase is a
heterodimeric enzyme consisting of a small catalytic
subunit (PriS) and a large subunit (PriL). In eukaryotic
organisms, a heterotetrameric enzyme formed by DNA
polymerase alpha, the B subunit and two primase subunits
has primase activity. Although the catalytic activity
resides within PriS, the PriL subunit is essential for
primase function as disruption of the PriL gene in yeast
is lethal. PriL is composed of two structural domains.
Several functions have been proposed for PriL such as
stabilization of the PriS, involvement in synthesis
initiation, improvement of primase processivity,
determination of product size and transfer of the
products to DNA polymerase alpha.
Length = 390
Score = 28.4 bits (64), Expect = 9.3
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 374 LRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLH---SAAVGDRFQFER 430
+R E LF + L +L D + V E E SA+ + + E
Sbjct: 61 VRQETELFRYRLELLSLEGLKQFLKSNGLDYQPVSDEEKEELREELLKSASSLKQIKIEA 120
Query: 431 LGYFAVDKDSTPEKLVFNRTVTLKDSF 457
++ V + + LV R V LK F
Sbjct: 121 TNFYKVPFEEVLD-LVRKRRVFLKKGF 146
>gnl|CDD|148849 pfam07475, Hpr_kinase_C, HPr Serine kinase C-terminal domain.
This family represents the C terminal kinase domain of
Hpr Serine/threonine kinase PtsK. This kinase is the
sensor in a multicomponent phosphorelay system in
control of carbon catabolic repression in bacteria.
This kinase in unusual in that it recognises the
tertiary structure of its target and is a member of a
novel family unrelated to any previously described
protein phosphorylating enzymes. X-ray analysis of the
full-length crystalline enzyme from Staphylococcus
xylosus at a resolution of 1.95 A shows the enzyme to
consist of two clearly separated domains that are
assembled in a hexameric structure resembling a
three-bladed propeller.
Length = 171
Score = 27.8 bits (63), Expect = 9.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 20 ELAVELIRRGH 30
E A+ELI+RGH
Sbjct: 33 ETALELIKRGH 43
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. Carbamoyl-phosphate synthase (CPSase)
catalyzes the first committed step in pyrimidine,
arginine, and urea biosynthesis. In general, it is a
glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II
in eukaryotes. An exception is the mammalian
mitochondrial urea-cycle form, CPSase I, in which the
glutamine amidotransferase domain active site Cys on the
small subunit has been lost, and the enzyme is
ammonia-dependent. In both CPSase I and the closely
related, glutamine-dependent CPSase III (allosterically
activated by acetyl-glutamate) demonstrated in some
other vertebrates, the small and large chain regions are
fused in a single polypeptide chain. This model
represents the large chain of glutamine-hydrolysing
carbamoyl-phosphate synthases, or the corresponding
regions of larger, multifunctional proteins, as found in
all domains of life, and CPSase I forms are considered
exceptions within the family. In several thermophilic
species (Methanobacterium thermoautotrophicum,
Methanococcus jannaschii, Aquifex aeolicus), the large
subunit appears split, at different points, into two
separate genes [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 1050
Score = 28.4 bits (64), Expect = 9.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 108 HAGDKWCIYPSYDYAHCIVDSIENITHSL 136
H+GD C+ P + IVD I++I +
Sbjct: 783 HSGDSTCVLPPQTLSAEIVDRIKDIVRKI 811
>gnl|CDD|235459 PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.
Length = 308
Score = 28.2 bits (64), Expect = 9.9
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 20 ELAVELIRRGH 30
E A+ELI+RGH
Sbjct: 161 ETALELIKRGH 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0878 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,218,888
Number of extensions: 2375393
Number of successful extensions: 2291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2232
Number of HSP's successfully gapped: 49
Length of query: 462
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 362
Effective length of database: 6,502,202
Effective search space: 2353797124
Effective search space used: 2353797124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.0 bits)