RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012516
(462 letters)
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 724 bits (1871), Expect = 0.0
Identities = 221/476 (46%), Positives = 299/476 (62%), Gaps = 24/476 (5%)
Query: 1 MGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWRD 55
+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+EYR + NSP+RD
Sbjct: 88 LGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRD 147
Query: 56 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI 115
R + E+L LFE MR G EEGKA LR K DM + M D + YRIKF H G+KWCI
Sbjct: 148 RSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCI 207
Query: 116 YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTV 174
YP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + + P +E+SRLN+ TV
Sbjct: 208 YPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTV 267
Query: 175 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 234
MSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F + IG+++ D+ I + L
Sbjct: 268 MSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASL 327
Query: 235 EYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSN 294
E IRE+LN+ APR M V++P+K+VI N + G + P +VPFS
Sbjct: 328 ESCIREDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHP---NKPEMGSRQVPFSG 383
Query: 295 VVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKK 354
++I+ +DFR + +K Y L GK V LR A+ IK V D + I I YD
Sbjct: 384 EIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVE-KDAEGNITTIFCTYDADTL 442
Query: 355 T-------KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVV 407
+ K KGV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S V+
Sbjct: 443 SKDPADGRKVKGVIHWVSAA----HALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVI 498
Query: 408 IPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 462
+ +AEPSL A G FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct: 499 K-QGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 553
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 705 bits (1820), Expect = 0.0
Identities = 176/516 (34%), Positives = 250/516 (48%), Gaps = 61/516 (11%)
Query: 1 MGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM----NSPWRD 55
+G + Y SDYF Y A +LIR+G AYV+ +PEE+ R SP+RD
Sbjct: 128 LGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRD 187
Query: 56 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI 115
R + E+L L M+ G +G+ LR K D+ N + D + YRI PH D+W I
Sbjct: 188 RSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHI 247
Query: 116 YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTV 174
YP+YD+ H + D+IE +THS+C+LEF RA Y WL+ L +P+ +E+ R + T+
Sbjct: 248 YPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEYTI 307
Query: 175 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 234
SKRKL LV V GWDDP + TL RR GVT ++ AF IG+SR++ + +
Sbjct: 308 TSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVY 367
Query: 235 EYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLD--------------AKRWPDAQ 280
E +R++LN APR M VL+P+KV +TN++ + L +
Sbjct: 368 ENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEKTLSLPYWPHDVVRDSPDGLVGMPGGGR 427
Query: 281 ADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKE 340
A VP + +YIE DF K + L PG +V LR A I+ + +D+
Sbjct: 428 VAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADDFG-TDEAG 486
Query: 341 TILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELD------ 394
+ HIRA K GV+HWV+ L E RL+++LF +P +
Sbjct: 487 QVTHIRATLLGEDA-KAAGVIHWVSAE----RALPAEFRLYDRLFRVPHPEGENADVEDD 541
Query: 395 ----------------------DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLG 432
++ L PDS V+ Y EPS+ R+QFER G
Sbjct: 542 SAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVL-RGYVEPSVAGDPADTRYQFERQG 600
Query: 433 YFAVDK------DSTPEKLVFNRTVTLKDSFPKGGK 462
YF D DS + LVF R +TLKD++ K G
Sbjct: 601 YFWRDPVELERVDSREDALVFGRIITLKDTWGKQGG 636
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 535 bits (1381), Expect = 0.0
Identities = 97/447 (21%), Positives = 164/447 (36%), Gaps = 56/447 (12%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
+G E + SD + YE +LI RG AYV PEE +E + + R E
Sbjct: 158 LGVEWDETVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRE 217
Query: 61 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD 120
+L+ + +M +EG A +R+K D+ + N + D ++ RI HP G ++ +YP +
Sbjct: 218 NLQRWREMFEM--KEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMN 275
Query: 121 YAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKL 180
++ + D + +TH L + R +L LG P Y RL + + +S
Sbjct: 276 FSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGA 335
Query: 181 NFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 240
+ GWDDP L TL + RRG+ +I + IG+ +DS + ++ R
Sbjct: 336 REGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRS 395
Query: 241 ELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEH 300
L + A R +P+K+ + + + ++ PD + VY+
Sbjct: 396 ILEEEARRYFFAADPVKLEVVGLPGP--VRVERPLHPD---HPEIGNRVLELRGEVYLPG 450
Query: 301 SDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGV 360
D + L A + + L +E + +
Sbjct: 451 DDLGEGP------------LRLIDAVNVIYSGGELR--------YHSEGIEEARELGASM 490
Query: 361 LHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSA 420
+HWV + L EV + + E
Sbjct: 491 IHWVPAE----SALEAEVIMPDASRV-----------------------RGVIEADASEL 523
Query: 421 AVGDRFQFERLGYFAVDKDSTPEKLVF 447
V D Q ER G+ + DS +VF
Sbjct: 524 EVDDVVQLERFGFARL--DSAGPGMVF 548
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-08
Identities = 68/423 (16%), Positives = 128/423 (30%), Gaps = 114/423 (26%)
Query: 71 GRIEEGKATLRMKQDM--QND-NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHC--I 125
+ L M Q + Q D N+ + IK H + + S Y +C +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 126 VDSIENITH----SL-CTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRK- 179
+ +++N +L C + TR L A L+ + ++ +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSMTLTPDEV 303
Query: 180 LNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQG-IGISRSDSLIRLDRLEYHI 238
+ L+ KY+D L R +T N I S D L D ++
Sbjct: 304 KSLLL--KYLD-------CRPQDLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 239 REELNKTAPRTMVVLNP-------LKVVI----TNMESGTIMHLDAKRWPDAQADDA--- 284
++L ++ VL P ++ + ++ + + + W D D
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVV 407
Query: 285 -------SAFYKVPFSNVVYIEHS---DFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVI 334
S K P + + I S + ++K +Y A +S++ Y P
Sbjct: 408 VNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEY---ALHRSIVDHYNIPKT----- 458
Query: 335 LSDDKETILHIRAEYDPSKKTKPK--GVLHW-------VAEPSPGVNPLRVEVRLFEKLF 385
+D P + E + LF +F
Sbjct: 459 --------------FDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-------RMTLFRMVF 497
Query: 386 NSENPAELD-DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQ-FERLGYFAVDKDSTPE 443
LD +L + K+ + S ++ + Q + + D D E
Sbjct: 498 -------LDFRFL-----EQKI---RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 444 KLV 446
+LV
Sbjct: 543 RLV 545
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 8e-07
Identities = 67/390 (17%), Positives = 118/390 (30%), Gaps = 144/390 (36%)
Query: 11 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 70
T DYF+EL +L Y + Y + L
Sbjct: 166 TDDYFEELRDL----------Y---------QTY-----------HVLVGDL-------- 187
Query: 71 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP-HPHAGD--KW----CIYPSYDY-A 122
I+ TL +LI + + +W P DY
Sbjct: 188 --IKFSAETLS-------------ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 123 HCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNF 182
+ S I + L A Y LG + P E T S+
Sbjct: 233 SIPI-SCPLIG--VIQL------AHYVVTAKLLG-FTPG--ELRSYLKGATGHSQG---- 276
Query: 183 LVTNKYV---DGWDD------PCLMTLA--GLR------RRGVTSTSINAFVQ-GIGI-- 222
LVT + D W+ + L G+R + + + ++ G+
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 223 ---SRSDSLIRLDRLEYHIREELNKTAPRTMVV----LN-PLKVVIT-NMES--GTIMHL 271
S S+ + ++++ ++ + N P V +N +V++ +S G + L
Sbjct: 337 PMLSISN--LTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 272 DAKRWPDAQADDASAFYKVPFSN--VVYIEHSDFRMKDSKDYYGL---APGKSVLLRYAF 326
+ P D S ++PFS + + + F L +P S LL A
Sbjct: 394 RKAKAPSGL--DQS---RIPFSERKLKF--SNRF----------LPVASPFHSHLLVPA- 435
Query: 327 PIKCTEVILSDDKETILHIRAE------YD 350
+++I D + + A+ YD
Sbjct: 436 ----SDLINKDLVKNNVSFNAKDIQIPVYD 461
Score = 41.6 bits (97), Expect = 6e-04
Identities = 39/199 (19%), Positives = 65/199 (32%), Gaps = 72/199 (36%)
Query: 305 MKDSKDYYGLAPG-KSVLLR--------YAFPIKCTEVILSDDKETILH--------IRA 347
M D Y + + V R Y F I ++++++ +H IR
Sbjct: 1631 M--GMDLYKTSKAAQDVWNRADNHFKDTYGFSI--LDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 348 EYD-------PSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFE----KLFNSEN--PA--- 391
Y K K + + + E S F L ++ PA
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSY--------TFRSEKGLLSATQFTQPALTL 1738
Query: 392 -ELDDWLSDLNPDSKVVIPE--AYAEPSLHS-------AAVGDRFQFERLGYFAVDKDST 441
E + DL SK +IP +A HS A++ D E V
Sbjct: 1739 MEKAAF-EDLK--SKGLIPADATFAG---HSLGEYAALASLADVMSIES----LV----- 1783
Query: 442 PEKLVFNRTVTLKDSFPKG 460
++VF R +T++ + P+
Sbjct: 1784 --EVVFYRGMTMQVAVPRD 1800
Score = 31.2 bits (70), Expect = 0.93
Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 63/197 (31%)
Query: 116 YPSYDYAHCIVDSIENITHSLCTLEFE---------TRRASYFWLLHALGLYQPYVWEYS 166
Y + A + + +N H T F +F + + YS
Sbjct: 1636 YKTSKAAQDVWNRADN--HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE----NYS 1689
Query: 167 RLNVSNTVMSKRKLNFL------VTNKYVDGWDD----------PCLMT-----LAGLRR 205
+ V K K + + Y + P L L+
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 206 RGVTSTSINAFVQG--IG-----ISRSDSL-----IRLDRLEYHIREELNKTA-PRT--- 249
+G+ +A G +G S +D + + + R + A PR
Sbjct: 1750 KGLIPA--DATFAGHSLGEYAALASLADVMSIESLVEV----VFYRGMTMQVAVPRDELG 1803
Query: 250 -----MVVLNPLKVVIT 261
M+ +NP +V +
Sbjct: 1804 RSNYGMIAINPGRVAAS 1820
Score = 29.2 bits (65), Expect = 3.9
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 41/124 (33%)
Query: 340 ETILHIRAEYDPSKKTKPKG--VLHWVAEPS--PGVN---------PL---------RVE 377
ET+ + ++K +G +L W+ PS P + PL V
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 378 VRLFEKLFNSENPAELDDWLSDLNPDSK-----VVIPEAYAEPSLHSAA---------VG 423
+L P EL +L S+ V I E + S + +G
Sbjct: 253 AKLLGF-----TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 424 DRFQ 427
R
Sbjct: 308 VRCY 311
Score = 28.1 bits (62), Expect = 7.9
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 48/118 (40%)
Query: 341 TILHIRAEYD---PSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWL 397
T+ H E+ P+ ++A +L E+ FN P + +
Sbjct: 10 TLSHGSLEHVLLVPTA-------SFFIAS------------QLQEQ-FNKILPEPTEGFA 49
Query: 398 SDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFA--VDKDSTPE-----KLVFN 448
+D P + E +F LGY + V+ + L
Sbjct: 50 ADDEPTTPA---ELVG-----------KF----LGYVSSLVEPSKVGQFDQVLNLCLT 89
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 43.0 bits (102), Expect = 1e-04
Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 31/140 (22%)
Query: 14 YFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM--------NSPWRDRPIAE 60
Y+Q + Y E+ ++ +G Y + + EE+ RE++ + WR P
Sbjct: 96 YYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKV 155
Query: 61 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI----- 115
+ G LR + D + R++ + D +
Sbjct: 156 L----PEPPAGV----APVLRFRNP-LTGTVAWDDAVKGRVEI-SNEELDD-LVVARPDG 204
Query: 116 YPSYDYAHCIVDSIE-NITH 134
P Y++ +VD ++ ITH
Sbjct: 205 TPMYNFC-VVVDDLDMGITH 223
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide-B; HET: GLU; 2.45A
{Synechococcus elongatus}
Length = 492
Score = 41.8 bits (99), Expect = 3e-04
Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 36/146 (24%)
Query: 14 YFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM--------NSPWRDRPIAE 60
YFQ +LY + L+ +G AY + TPEE++ R ++ ++ R E
Sbjct: 72 YFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEE 131
Query: 61 SLKLFEDMRNGRIEEG-KATLRMKQDMQND-NFNMYDLIAYRIKFTPHPHAGDKWCI--- 115
+ G +R K + + DL+ R+ + GD I
Sbjct: 132 --------QAAFEAAGRTPVIRFKIEDDRQIEWQ--DLVRGRVSWQGADLGGD-MVIARA 180
Query: 116 -------YPSYDYAHCIVDSIENITH 134
YP Y+ + D IT
Sbjct: 181 APRGEIGYPLYNLVVVVDDIAMGITD 206
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 41.4 bits (98), Expect = 5e-04
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 24/134 (17%)
Query: 14 YFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM--NSPWRDRPIAESLKLFE 66
Y Q LY + A EL++RG AY +TPEE+++ R++K + R+ P E+ +
Sbjct: 80 YRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE--- 136
Query: 67 DMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI----YPSYDY 121
R G +R+K + + D + + + + D + YP+Y
Sbjct: 137 -----RARRGEPHVIRLKVP-RPGTTEVKDELRGVVVY-DNQEIPDVVLLKSDGYPTYHL 189
Query: 122 AHCIVDSIE-NITH 134
A +VD +T
Sbjct: 190 A-NVVDDHLMGVTD 202
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase
1, glurs 1, structural genomics, joint center for ST
genomics, JCSG; 2.34A {Thermotoga maritima}
Length = 481
Score = 40.6 bits (96), Expect = 8e-04
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 31/141 (21%)
Query: 14 YFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM--------NSPWRDRPIAE 60
Y Q E+Y E A L++ G AY + PEEI+E REK + + ++
Sbjct: 92 YRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEK---- 147
Query: 61 SLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI---- 115
+ R E+G + + K M ++ + D++ + F GD + I
Sbjct: 148 --FDTPERRREYEEKGLRPAVFFK--MPRKDYVLNDVVKGEVVF-KTGAIGD-FVIMRSN 201
Query: 116 -YPSYDYAHCIVDSIE-NITH 134
P+Y++A C+VD + ITH
Sbjct: 202 GLPTYNFA-CVVDDMLMEITH 221
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
PDB: 3pny_A 3pnv_A
Length = 498
Score = 39.8 bits (94), Expect = 0.001
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 32/140 (22%)
Query: 14 YFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKMNSP-------WRDRPIAES 61
Y Q E+Y ++ L+ G AY TPEE++ +P R A+
Sbjct: 85 YRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQR 144
Query: 62 LKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI----- 115
+ EG + +R++ M +D+ DL+ + F D + +
Sbjct: 145 AA--------YLAEGRQPVVRLR--MPDDDLAWNDLVRGPVTF-AAGSVPD-FALTRASG 192
Query: 116 YPSYDYAHCIVDSIE-NITH 134
P Y D ITH
Sbjct: 193 DPLYTLV-NPCDDALMKITH 211
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.013
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 36 QTPEEIKEYRE-------------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 82
Q PE I+++RE K M WR++ + L+ + ++ ++E+ K R+
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD-LEEWNQRQSEQVEKNKINNRI 140
Query: 83 KQ 84
Sbjct: 141 AD 142
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 32.6 bits (75), Expect = 0.33
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 15/76 (19%)
Query: 14 YFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWR----DRPIAESLKL 64
Y Q E+Y E A +L+ AY E+ + P P+ K+
Sbjct: 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKV 267
Query: 65 ------FEDMRNGRIE 74
FED+ G +E
Sbjct: 268 LPGKTSFEDLLKGYME 283
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 32.1 bits (74), Expect = 0.42
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 15/76 (19%)
Query: 14 YFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWR----DRPIAESLKL 64
Y Q E+Y E A +L+ AY E+ + P P+ K+
Sbjct: 104 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKV 163
Query: 65 ------FEDMRNGRIE 74
FED+ G +E
Sbjct: 164 LPGKTSFEDLLKGYME 179
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein,
N-glycosylation, structural genomics; HET: FLC; 1.60A
{Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A*
3fj7_A*
Length = 237
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 389 NPAELDDWLSDL-NPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 447
NP ++ DL N ++V+PE + + V + + + F
Sbjct: 91 NPLKIKGL-KDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQN-FRNNIVAF 148
Query: 448 NRTVT 452
Sbjct: 149 VPNSG 153
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 29.8 bits (68), Expect = 2.0
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 389 NPAELDDWLSDLNPDSKVVIPEAYAE 414
++ W++ ++ ++ EAYAE
Sbjct: 159 PADVIEPWIASKPANTMFIVDEAYAE 184
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.8
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 17/46 (36%)
Query: 43 EYRE-KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 87
E + KK+ + SLKL+ D + A L +K M+
Sbjct: 18 EKQALKKLQA---------SLKLYAD------DSAPA-LAIKATME 47
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 29.2 bits (65), Expect = 3.2
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 220 IGISRSDSLIRLDRLE-YHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAK 274
I ++ S + +D + T+PR + L+ K +T + I ++ K
Sbjct: 58 IVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK 113
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 28.3 bits (64), Expect = 6.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 389 NPAELDDWLSDLNPDSKVVIPEAYAE 414
+ +E +++ +N D VVI AY E
Sbjct: 171 DASEATEFIKGVNEDCLVVIDAAYNE 196
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 28.4 bits (63), Expect = 6.4
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 8 ITYTSDYFQELYELA------VELIRRGHAYVDHQTPEEIKEYREKKMNSP 52
TY DY Q L ++ + + H E I +R+ S
Sbjct: 369 YTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYRSL 419
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate
binding protein, calcium, lactate, trap transporter,
transport protein; 1.40A {Thermus thermophilus} PDB:
2zzw_A 2zzx_A
Length = 361
Score = 28.2 bits (63), Expect = 6.8
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 259 VITNMESGTIMHLDAKRWPDAQADDASAFYKV 290
V +E G I DA + + F++V
Sbjct: 203 VYPALERGVI---DAADFVGPAVNYNLGFHQV 231
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 27.9 bits (63), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 389 NPAELDDWLSDLNPDSKVVIPEAYAE 414
A++ +L + D VV+ EAY E
Sbjct: 173 ELADIQAFLDRVPSDVLVVLDEAYIE 198
>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione,
structural genomics, protein structure initiative; HET:
GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*
Length = 213
Score = 27.4 bits (61), Expect = 7.7
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 24/100 (24%)
Query: 375 RVEVRLFEK----LFNSENPAELDDWLSDLNPDSKV---------VIPE----------- 410
RV + L +S + + +NP K V+ +
Sbjct: 16 RVAISLKSLGLPFEHHSLSVFSTFEQFKAINPVVKAPTLVCEGGEVLMDSSLIIDYLETL 75
Query: 411 AYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRT 450
A + SL A+ R + RL A+ ++V+ R
Sbjct: 76 AGPQRSLMPTALPQRLRELRLVGLALAACEKSVQIVYERN 115
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity
clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA;
2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB:
1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Length = 343
Score = 27.9 bits (62), Expect = 7.7
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 376 VEVRLFEKLFNSENPAELDDWLSDLNPDSKVVI 408
+ + L E N+ +L L+ D +++
Sbjct: 80 LLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV 112
>3pnt_A NAD+-glycohydrolase; glycohydrolase, NAD+, virulence factor,
hydrolase-hydrolase complex; 2.80A {Streptococcus
pyogenes}
Length = 268
Score = 27.5 bits (60), Expect = 8.1
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 376 VEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERL 431
+E LFEK F D W++D D + + YA+ ++ +AV R ++ R+
Sbjct: 12 MERDLFEKKFKEIK----DKWVTDKQADEFIETADKYADKAVQMSAVASRAEYYRM 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,382,554
Number of extensions: 450558
Number of successful extensions: 1113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1082
Number of HSP's successfully gapped: 47
Length of query: 462
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 365
Effective length of database: 3,993,456
Effective search space: 1457611440
Effective search space used: 1457611440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)