RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012516
(462 letters)
>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS),
C-terminal (anticodon-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 187 bits (476), Expect = 9e-58
Identities = 89/219 (40%), Positives = 124/219 (56%), Gaps = 18/219 (8%)
Query: 246 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRM 305
APR M V++P+K+VI N + G + P+ +VPFS ++I+ +DFR
Sbjct: 1 APRAMAVIDPVKLVIENYQ-GEGEMVTMPNHPN---KPEMGSRQVPFSGEIWIDRADFRE 56
Query: 306 KDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTK-------PK 358
+ +K Y L GK V LR A+ IK V D + I I YD +K K
Sbjct: 57 EANKQYKRLVLGKEVRLRNAYVIKAERVE-KDAEGNITTIFCTYDADTLSKDPADGRKVK 115
Query: 359 GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLH 418
GV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S V+ + +AEPSL
Sbjct: 116 GVIHWVSAA----HALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIK-QGFAEPSLK 170
Query: 419 SAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDS 456
A G FQFER GYF +D + ST EK VFNRTV L+D+
Sbjct: 171 DAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDT 209
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 171 bits (433), Expect = 5e-50
Identities = 129/247 (52%), Positives = 168/247 (68%), Gaps = 5/247 (2%)
Query: 3 WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPI 58
+ Y+SDYF +L+ A+ELI +G AYVD TPE+I+EYR NSP+RDR +
Sbjct: 84 HWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSV 143
Query: 59 AESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPS 118
E+L LFE MR G EEGKA LR K DM + M D + YRIKF H G+KWCIYP
Sbjct: 144 EENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPM 203
Query: 119 YDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSK 177
YD+ HCI D++E ITHSLCTLEF+ R Y W+L + + P +E+SRLN+ TVMSK
Sbjct: 204 YDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSK 263
Query: 178 RKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 237
RKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F + IG+++ D+ I + LE
Sbjct: 264 RKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESC 323
Query: 238 IREELNK 244
IRE+LN+
Sbjct: 324 IREDLNE 330
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 108 bits (271), Expect = 3e-27
Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 29/253 (11%)
Query: 3 WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESL 62
P S+ + A EL++RG AY +TPEE+++ R++K R R
Sbjct: 74 GGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARN----- 128
Query: 63 KLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPH---PHAGDKWCIYPSY 119
+ + R G+ + + + + D + + + K YP+Y
Sbjct: 129 -IPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTY 187
Query: 120 DYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP-YVWEYSRLNVSNTVMSKR 178
A+ + D + +T + E+ + L A G P + N T +SKR
Sbjct: 188 HLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTKISKR 247
Query: 179 KLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR---LE 235
K +L + G ++ ++ +G S D ++
Sbjct: 248 KS----------------HTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQ 291
Query: 236 YHIREELNKTAPR 248
E ++ P
Sbjct: 292 AFTWERVSLGGPV 304
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 76.8 bits (188), Expect = 3e-16
Identities = 26/210 (12%), Positives = 52/210 (24%), Gaps = 21/210 (10%)
Query: 1 MGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 60
+ + S E L +G +Y T I+
Sbjct: 65 GLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHH--- 121
Query: 61 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD 120
+ +R + + + +I K + +Y+
Sbjct: 122 -----------GPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN 170
Query: 121 YAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNTVMSKRK 179
A + D + +T + + L G Y+ LN +SK+
Sbjct: 171 LAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQN 230
Query: 180 LNFLVTNKYVDGWDDPCLMTLAGLRRRGVT 209
+ DP + +A L+ G
Sbjct: 231 HAPAL------PKGDPRPVLIAALQFLGQQ 254
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 27.7 bits (61), Expect = 1.3
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 28 RGHAYVDHQTPEEIKEYREKKMNSPWRDRPI----AESLKLFEDMRNGRIEEGKATLRMK 83
RG AYV ++ + K + +R + + + F+ M + EE L+ K
Sbjct: 46 RGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEK 105
Query: 84 QDMQND 89
+ D
Sbjct: 106 YGINTD 111
>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
synthase MenF {Escherichia coli [TaxId: 562]}
Length = 428
Score = 29.0 bits (64), Expect = 1.4
Identities = 16/170 (9%), Positives = 36/170 (21%), Gaps = 27/170 (15%)
Query: 13 DYFQELYELAVELIRRGHAY------------VDHQTPEEIKEYREKKMNSPWRDRP--- 57
+ +L ELA + I G + + + +
Sbjct: 169 TGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFD 228
Query: 58 -----IAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK 112
+ S + R+ + + + + +
Sbjct: 229 GENAFLGSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQRENMLVV 288
Query: 113 WCI-------YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 155
I + D V + + H + +A LH L
Sbjct: 289 EDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVICLHQL 338
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 28.6 bits (62), Expect = 1.6
Identities = 12/193 (6%), Positives = 33/193 (17%), Gaps = 17/193 (8%)
Query: 3 WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESL 62
E E + ++ + + W
Sbjct: 119 EVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEH 178
Query: 63 KLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYA 122
+ ++ + Y + K +
Sbjct: 179 RREAEI---------------IEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR 223
Query: 123 HCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV--MSKRKL 180
+ + + G P Y + + MS K
Sbjct: 224 WSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKG 283
Query: 181 NFLVTNKYVDGWD 193
N ++ + + +
Sbjct: 284 NVILLSDLYEVLE 296
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
phosphoribosyltransferase EF2626 {Enterococcus faecalis
[TaxId: 1351]}
Length = 345
Score = 27.2 bits (60), Expect = 4.3
Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 4 EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDR------- 56
F Y D+ + ++ G + T +EIK+Y ++ ++S +
Sbjct: 261 HTFINKYVRDFEAR--PVLQDIFVEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQ 318
Query: 57 --PIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 88
P+ S + + + +E+ +++D+++
Sbjct: 319 KYPVDLSTDCW-NHKMNLLEK------VRKDVKH 345
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 26.0 bits (56), Expect = 7.5
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 5/68 (7%)
Query: 65 FEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHC 124
F D L M + N + I + K ++
Sbjct: 91 FADENFKLRHSAPGLLSMANSGPSTN-----GCQFFITCSKCDWLDGKHVVFGKIIDGLL 145
Query: 125 IVDSIENI 132
++ IEN+
Sbjct: 146 VMRKIENV 153
>d2je8a2 b.1.4.1 (A:784-864) Beta-mannosidase, domains 2, 4 and 5
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 81
Score = 24.4 bits (53), Expect = 9.7
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 296 VYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKE--TILHIRAEY 349
++IE + S +++ L PG+ + + I ++ I HIR Y
Sbjct: 30 IFIETPLQGARYSDNFFDLLPGERKKVII-----TSPRIKKGEELPVNIKHIRETY 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,827,479
Number of extensions: 88940
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 20
Length of query: 462
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 374
Effective length of database: 1,199,356
Effective search space: 448559144
Effective search space used: 448559144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)