BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012517
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UUM|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUM|B Chain B, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUO|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Brequinar
Length = 372
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 177/379 (46%), Positives = 237/379 (62%), Gaps = 20/379 (5%)
Query: 84 FSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAA 143
F A L+ LLD E AH LAV + G +PR D +L ++V G KF NP+G+AA
Sbjct: 13 FYAEYLMPGLQRLLDPESAHRLAVRVTSLGLLPRATFQDSDMLEVKVLGHKFRNPVGIAA 72
Query: 144 GFDKNXXXXXXXXXXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203
GFDKN SVTP PQEGNP+PR+FRL ++ A+INR GFNS G+
Sbjct: 73 GFDKNGEAVDGLYKLGFGFVEVGSVTPQPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSV 132
Query: 204 VAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGV 263
V RL A+ K+ ++ A G LG+N+GKNKTSEDAAADY +GV
Sbjct: 133 VEHRLRARQQKQA-------------QLTADGLP----LGINLGKNKTSEDAAADYAEGV 175
Query: 264 HTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIA 323
TL ADYLV+NVSSPNT GLR LQG+ +L+ L+ KV RD ++ + P +LVKIA
Sbjct: 176 RTLGPLADYLVVNVSSPNTAGLRSLQGKTELRHLLSKVLQERDALKGTRK--PAVLVKIA 233
Query: 324 PDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNNI 383
PDL+ +D EDIA+VA L +DGLI++NTT+SRP + + + ET
Sbjct: 234 PDLTAQDKEDIASVARELGIDGLIVTNTTVSRPVGL-QGALRSETGGLSGKPLRDLSTQT 292
Query: 384 LKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443
++EMY LT+G+IP+IG GG+SSG+DA KI+AGA+LVQLYTA + GP ++ ++K EL
Sbjct: 293 IREMYALTQGRIPIIGVGGVSSGQDALEKIQAGASLVQLYTALIFLGPPVVVRVKRELEA 352
Query: 444 CLERDGFKSIIEAVGADYR 462
L+ GF ++ +A+GAD+R
Sbjct: 353 LLKERGFTTVTDAIGADHR 371
>pdb|3KVJ|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 105 At 1.94a
Resolution
pdb|3KVK|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 641 At 2.05a
Resolution
pdb|3KVL|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 715 At 1.85a
Resolution
pdb|3KVM|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 951 At 2.00a
Resolution
Length = 390
Score = 311 bits (797), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 22/380 (5%)
Query: 84 FSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAA 143
F A L+ LLD E AH LAV + G +PR + D +L + V G KF NP+G+AA
Sbjct: 31 FYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAA 90
Query: 144 GFDKNXXXXXXXXXXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203
GFDK+ SVTP PQEGNP+PR+FRL ++ A+INR GFNS G+
Sbjct: 91 GFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSV 150
Query: 204 VAKRLGAQHGKR-KLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQG 262
V RL A+ K+ KL E LGVN+GKNKTS DAA DY +G
Sbjct: 151 VEHRLRARQQKQAKLTEDGLP------------------LGVNLGKNKTSVDAAEDYAEG 192
Query: 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322
V L ADYLV+NVSSPNT GLR LQG+ +L+ L+ KV RD ++ P +LVKI
Sbjct: 193 VRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHR--PAVLVKI 250
Query: 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNN 382
APDL+ +D EDIA+V L +DGLI++NTT+SRP + + + ET
Sbjct: 251 APDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGL-QGALRSETGGLSGKPLRDLSTQ 309
Query: 383 ILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442
++EMY LT+G++P+IG GG+SSG+DA KIRAGA+LVQLYTA + GP ++ ++K EL
Sbjct: 310 TIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELE 369
Query: 443 ECLERDGFKSIIEAVGADYR 462
L+ GF + +A+GAD+R
Sbjct: 370 ALLKEQGFGGVTDAIGADHR 389
>pdb|2WV8|A Chain A, Complex Of Human Dihydroorotate Dehydrogenase With The
Inhibitor 221290
Length = 365
Score = 311 bits (796), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 22/380 (5%)
Query: 84 FSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAA 143
F A L+ LLD E AH LAV + G +PR + D +L + V G KF NP+G+AA
Sbjct: 6 FYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAA 65
Query: 144 GFDKNXXXXXXXXXXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203
GFDK+ SVTP PQEGNP+PR+FRL ++ A+INR GFNS G+
Sbjct: 66 GFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSV 125
Query: 204 VAKRLGAQHGKR-KLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQG 262
V RL A+ K+ KL E LGVN+GKNKTS DAA DY +G
Sbjct: 126 VEHRLRARQQKQAKLTEDGLP------------------LGVNLGKNKTSVDAAEDYAEG 167
Query: 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322
V L ADYLV+NVSSPNT GLR LQG+ +L+ L+ KV RD ++ P +LVKI
Sbjct: 168 VRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHR--PAVLVKI 225
Query: 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNN 382
APDL+ +D EDIA+V L +DGLI++NTT+SRP + + + ET
Sbjct: 226 APDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGL-QGALRSETGGLSGKPLRDLSTQ 284
Query: 383 ILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442
++EMY LT+G++P+IG GG+SSG+DA KIRAGA+LVQLYTA + GP ++ ++K EL
Sbjct: 285 TIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELE 344
Query: 443 ECLERDGFKSIIEAVGADYR 462
L+ GF + +A+GAD+R
Sbjct: 345 ALLKEQGFGGVTDAIGADHR 364
>pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|2BXV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2PRH|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRL|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRM|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|3F1Q|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 1
pdb|3FJ6|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 2
pdb|3FJL|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 3
pdb|3G0U|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 4
pdb|3G0X|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 5
pdb|3ZWS|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
pdb|3ZWT|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 367
Score = 311 bits (796), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 22/380 (5%)
Query: 84 FSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAA 143
F A L+ LLD E AH LAV + G +PR + D +L + V G KF NP+G+AA
Sbjct: 8 FYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAA 67
Query: 144 GFDKNXXXXXXXXXXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203
GFDK+ SVTP PQEGNP+PR+FRL ++ A+INR GFNS G+
Sbjct: 68 GFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSV 127
Query: 204 VAKRLGAQHGKR-KLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQG 262
V RL A+ K+ KL E LGVN+GKNKTS DAA DY +G
Sbjct: 128 VEHRLRARQQKQAKLTEDGLP------------------LGVNLGKNKTSVDAAEDYAEG 169
Query: 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322
V L ADYLV+NVSSPNT GLR LQG+ +L+ L+ KV RD ++ P +LVKI
Sbjct: 170 VRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHR--PAVLVKI 227
Query: 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNN 382
APDL+ +D EDIA+V L +DGLI++NTT+SRP + + + ET
Sbjct: 228 APDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGL-QGALRSETGGLSGKPLRDLSTQ 286
Query: 383 ILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442
++EMY LT+G++P+IG GG+SSG+DA KIRAGA+LVQLYTA + GP ++ ++K EL
Sbjct: 287 TIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELE 346
Query: 443 ECLERDGFKSIIEAVGADYR 462
L+ GF + +A+GAD+R
Sbjct: 347 ALLKEQGFGGVTDAIGADHR 366
>pdb|3U2O|A Chain A, Dihydroorotate Dehydrogenase (Dhodh) Crystal Structure In
Complex With Small Molecule Inhibitor
Length = 395
Score = 311 bits (796), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 22/380 (5%)
Query: 84 FSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAA 143
F A L+ LLD E AH LAV + G +PR + D +L + V G KF NP+G+AA
Sbjct: 36 FYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAA 95
Query: 144 GFDKNXXXXXXXXXXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203
GFDK+ SVTP PQEGNP+PR+FRL ++ A+INR GFNS G+
Sbjct: 96 GFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSV 155
Query: 204 VAKRLGAQHGKR-KLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQG 262
V RL A+ K+ KL E LGVN+GKNKTS DAA DY +G
Sbjct: 156 VEHRLRARQQKQAKLTEDGLP------------------LGVNLGKNKTSVDAAEDYAEG 197
Query: 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322
V L ADYLV+NVSSPNT GLR LQG+ +L+ L+ KV RD ++ P +LVKI
Sbjct: 198 VRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHR--PAVLVKI 255
Query: 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNN 382
APDL+ +D EDIA+V L +DGLI++NTT+SRP + + + ET
Sbjct: 256 APDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGL-QGALRSETGGLSGKPLRDLSTQ 314
Query: 383 ILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442
++EMY LT+G++P+IG GG+SSG+DA KIRAGA+LVQLYTA + GP ++ ++K EL
Sbjct: 315 TIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELE 374
Query: 443 ECLERDGFKSIIEAVGADYR 462
L+ GF + +A+GAD+R
Sbjct: 375 ALLKEQGFGGVTDAIGADHR 394
>pdb|2FPT|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPY|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FQI|A Chain A, Dual Binding Modes Of A Novel Series Of Dhodh Inhibitors
Length = 395
Score = 311 bits (796), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 22/380 (5%)
Query: 84 FSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAA 143
F A L+ LLD E AH LAV + G +PR + D +L + V G KF NP+G+AA
Sbjct: 36 FYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAA 95
Query: 144 GFDKNXXXXXXXXXXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203
GFDK+ SVTP PQEGNP+PR+FRL ++ A+INR GFNS G+
Sbjct: 96 GFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSV 155
Query: 204 VAKRLGAQHGKR-KLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQG 262
V RL A+ K+ KL E LGVN+GKNKTS DAA DY +G
Sbjct: 156 VEHRLRARQQKQAKLTEDGLP------------------LGVNLGKNKTSVDAAEDYAEG 197
Query: 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322
V L ADYLV+NVSSPNT GLR LQG+ +L+ L+ KV RD ++ P +LVKI
Sbjct: 198 VRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHR--PAVLVKI 255
Query: 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNN 382
APDL+ +D EDIA+V L +DGLI++NTT+SRP + + + ET
Sbjct: 256 APDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGL-QGALRSETGGLSGKPLRDLSTQ 314
Query: 383 ILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442
++EMY LT+G++P+IG GG+SSG+DA KIRAGA+LVQLYTA + GP ++ ++K EL
Sbjct: 315 TIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELE 374
Query: 443 ECLERDGFKSIIEAVGADYR 462
L+ GF + +A+GAD+R
Sbjct: 375 ALLKEQGFGGVTDAIGADHR 394
>pdb|2B0M|A Chain A, Human Dihydroorotate Dehydrogenase Bound To A Novel
Inhibitor
Length = 393
Score = 310 bits (795), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 22/380 (5%)
Query: 84 FSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAA 143
F A L+ LLD E AH LAV + G +PR + D +L + V G KF NP+G+AA
Sbjct: 34 FYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAA 93
Query: 144 GFDKNXXXXXXXXXXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203
GFDK+ SVTP PQEGNP+PR+FRL ++ A+INR GFNS G+
Sbjct: 94 GFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSV 153
Query: 204 VAKRLGAQHGKR-KLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQG 262
V RL A+ K+ KL E LGVN+GKNKTS DAA DY +G
Sbjct: 154 VEHRLRARQQKQAKLTEDGLP------------------LGVNLGKNKTSVDAAEDYAEG 195
Query: 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322
V L ADYLV+NVSSPNT GLR LQG+ +L+ L+ KV RD ++ P +LVKI
Sbjct: 196 VRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHR--PAVLVKI 253
Query: 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNN 382
APDL+ +D EDIA+V L +DGLI++NTT+SRP + + + ET
Sbjct: 254 APDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGL-QGALRSETGGLSGKPLRDLSTQ 312
Query: 383 ILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442
++EMY LT+G++P+IG GG+SSG+DA KIRAGA+LVQLYTA + GP ++ ++K EL
Sbjct: 313 TIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELE 372
Query: 443 ECLERDGFKSIIEAVGADYR 462
L+ GF + +A+GAD+R
Sbjct: 373 ALLKEQGFGGVTDAIGADHR 392
>pdb|3SFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Inhibitor Dsm267
Length = 400
Score = 194 bits (494), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 128/374 (34%), Positives = 179/374 (47%), Gaps = 31/374 (8%)
Query: 97 LDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAAGFDKNXXXXXXXX 156
+D E+ H L + +P + D + F NP G+AAGFDKN
Sbjct: 40 IDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSIL 99
Query: 157 XXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRK 216
++TP Q GN KPRIFR + +IIN CGFN+ G V + L RK
Sbjct: 100 KLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILF---RK 156
Query: 217 LDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVIN 276
E + S I+GV+IGKNK + + D ++ + +YADY+ IN
Sbjct: 157 RQEEDKLLSKH-------------IVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAIN 203
Query: 277 VSSPNTPGLRMLQGRKQLKDLV----------KKVQAARDEMQW--GEEGPPPLLVKIAP 324
VSSPNTPGLR Q +LK+++ +K DE W + P + VK+AP
Sbjct: 204 VSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAP 263
Query: 325 DLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNNIL 384
DL++E ++IA V + +DG+IISNTT D S + +
Sbjct: 264 DLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKS---FENKKGGVSGAKLKDISTKFI 320
Query: 385 KEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAEC 444
EMY T +IP+I GGI SG DA KI AGA++ QLY+ + G QIK EL
Sbjct: 321 CEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHL 380
Query: 445 LERDGFKSIIEAVG 458
L + G+ ++ EA+G
Sbjct: 381 LYQRGYYNLKEAIG 394
>pdb|3I65|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm1
pdb|3I68|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm2
pdb|3I6R|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm74
pdb|3O8A|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Novel Inhibitor Genz667348
Length = 415
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/374 (34%), Positives = 179/374 (47%), Gaps = 31/374 (8%)
Query: 97 LDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAAGFDKNXXXXXXXX 156
+D E+ H L + +P + D + F NP G+AAGFDKN
Sbjct: 55 IDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSIL 114
Query: 157 XXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRK 216
++TP Q GN KPRIFR + +IIN CGFN+ G V + L RK
Sbjct: 115 KLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILF---RK 171
Query: 217 LDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVIN 276
E + S I+GV+IGKNK + + D ++ + +YADY+ IN
Sbjct: 172 RQEEDKLLSKH-------------IVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAIN 218
Query: 277 VSSPNTPGLRMLQGRKQLKDLV----------KKVQAARDEMQW--GEEGPPPLLVKIAP 324
VSSPNTPGLR Q +LK+++ +K DE W + P + VK+AP
Sbjct: 219 VSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAP 278
Query: 325 DLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNNIL 384
DL++E ++IA V + +DG+IISNTT D S + +
Sbjct: 279 DLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKS---FENKKGGVSGAKLKDISTKFI 335
Query: 385 KEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAEC 444
EMY T +IP+I GGI SG DA KI AGA++ QLY+ + G QIK EL
Sbjct: 336 CEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHL 395
Query: 445 LERDGFKSIIEAVG 458
L + G+ ++ EA+G
Sbjct: 396 LYQRGYYNLKEAIG 409
>pdb|1TV5|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 443
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 128/404 (31%), Positives = 180/404 (44%), Gaps = 61/404 (15%)
Query: 97 LDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAAGFDKNXXXXXXXX 156
+D E+ H L + +P + D + F NP G+AAGFDKN
Sbjct: 53 IDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSIL 112
Query: 157 XXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRK 216
++TP Q GN KPRIFR + +IIN CGFN+ G V + L RK
Sbjct: 113 KLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILF---RK 169
Query: 217 LDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVIN 276
E + S I+GV+IGKNK + + D ++ + +YADY+ IN
Sbjct: 170 RQEEDKLLSKH-------------IVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAIN 216
Query: 277 VSSPNTPGLRMLQGRKQLKDLV----------KKVQAARDEMQWGEEG------------ 314
VSSPNTPGLR Q +LK+++ +K DE + E+
Sbjct: 217 VSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKN 276
Query: 315 --------------------PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS 354
P + VK+APDL++E ++IA V + +DG+IISNTT
Sbjct: 277 NSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ 336
Query: 355 RPDPVSKNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414
D S + + EMY T +IP+I GGI SG DA KI
Sbjct: 337 INDIKS---FENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIE 393
Query: 415 AGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVG 458
AGA++ QLY+ + G QIK EL L + G+ ++ EA+G
Sbjct: 394 AGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIG 437
>pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|B Chain B, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|D Chain D, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|E Chain E, Escherichia Coli Dihydroorotate Dehydrogenase
Length = 336
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 171/353 (48%), Gaps = 37/353 (10%)
Query: 97 LDAEVAHTLAVSAAAR------GWVPREKRPDPAILGLEVWGRKFSNPLGLAAGFDKNXX 150
LD E AH R + R+K P + G F NPLGLAAG DK+
Sbjct: 13 LDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPV---NCXGLTFKNPLGLAAGLDKDGE 69
Query: 151 XXXXXXXXXXXXXXXXSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGA 210
+VTP PQ GN KPR+FRL +INR GFN+ G+ + + +
Sbjct: 70 CIDALGAXGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRXGFNNLGVDNLVENVKK 129
Query: 211 QHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTS--EDAAADYVQGVHTLSQ 268
H G+LG+NIGKNK + E DY+ +
Sbjct: 130 AHYD-------------------------GVLGINIGKNKDTPVEQGKDDYLICXEKIYA 164
Query: 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSK 328
YA Y+ IN+SSPNTPGLR LQ + L DL+ ++ ++++Q P+ VKIAPDLS+
Sbjct: 165 YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAXHHKYVPIAVKIAPDLSE 224
Query: 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNNILKEMY 388
E+L +A V +DG+I +NTT+ R V +T I++ +
Sbjct: 225 EELIQVADSLVRHNIDGVIATNTTLDR-SLVQGXKNCDQTGGLSGRPLQLKSTEIIRRLS 283
Query: 389 LLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441
L G++P+IG GGI S A KI AGA+LVQ+Y+ F + GP LI +I +
Sbjct: 284 LELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI 336
>pdb|2B4G|A Chain A, Dihydroorotate Dehydrogenase
pdb|2B4G|B Chain B, Dihydroorotate Dehydrogenase
pdb|2B4G|C Chain C, Dihydroorotate Dehydrogenase
pdb|2B4G|D Chain D, Dihydroorotate Dehydrogenase
Length = 317
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 128/347 (36%), Gaps = 46/347 (13%)
Query: 121 PDPAILGLEVWGRKFSNPLGLAAG-FDKNXXXXXXXXXXXXXXXXXXSVTPVPQEGNPKP 179
P L + + G +FSNP AAG S T P+ GNP+P
Sbjct: 2 PGSMSLKVNILGHEFSNPFMNAAGVLCTTEEDLRRMTESESGSLIGKSCTLAPRTGNPEP 61
Query: 180 RIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHG-KRKLDETSRTSSSPNDEVKAGGKAG 238
R F L IN G + G+ H RK S + S + V+ K
Sbjct: 62 RYFGLPL--GSINSMGLPNLGVDFYLSYAAQTHDYSRKPLFLSMSGLSVEESVEMVKKLV 119
Query: 239 PGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGL-RMLQGRKQLKDL 297
P I K K + L +N+S PN PG ++ +
Sbjct: 120 P------ITKEKGT-------------------ILELNLSCPNVPGKPQVGYDFDTTRTY 154
Query: 298 VKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRP- 356
++KV A +G P VK+ P + AAV L I +I
Sbjct: 155 LQKVSEA-----YGL----PFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGL 205
Query: 357 --DPVSKNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIP---LIGCGGISSGEDAYR 411
DP ++ V K L + R + P + GCGG+ SGE+A+
Sbjct: 206 VIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFR-RCPDKLVFGCGGVYSGEEAFL 264
Query: 412 KIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVG 458
I AGA++VQ+ TA GP + ++ EL E + G+K++ E G
Sbjct: 265 HILAGASMVQVGTALHDEGPIIFARLNKELQEIMTNKGYKTLDEFRG 311
>pdb|3C61|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
Length = 314
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 132/344 (38%), Gaps = 50/344 (14%)
Query: 126 LGLEVWGRKFSNPLGLAAG-FDKNXXXXXXXXXXXXXXXXXXSVTPVPQEGNPKPRIFRL 184
L +++ F+NP AAG S TP +EGNP PR +R
Sbjct: 4 LQVDLLNNTFANPFMNAAGVMCSTTEDLVAMTESASGSLVSKSCTPALREGNPTPR-YRA 62
Query: 185 RQEGAIINRCGFNSEGIVAVAKRLGAQHGK-RKLDETSRTSSSPNDEVKAGGKAGPGILG 243
G+I N G + G QH RK S + S + V+ +
Sbjct: 63 LPLGSI-NSMGLPNNGFDFYLAYAAEQHDYGRKPLFLSMSGLSVRENVEMCKRL------ 115
Query: 244 VNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLK---DLVKK 300
AA +GV L +N+S PN PG + Q+ D +++
Sbjct: 116 -----------AAVATEKGV--------ILELNLSCPNVPG------KPQVAYDFDAMRQ 150
Query: 301 VQAARDEMQWGEEG--PPPLLVKIAPDLSKEDLEDIAAVAVALRLD----GLIISNTTIS 354
A E+ G PP D + E L + V ++ GL+I T S
Sbjct: 151 CLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPQVQFITCINSIGNGLVIDAETES 210
Query: 355 RPDPVSKNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414
V P N+ Y GK+ + GCGG+ +GEDA+ +
Sbjct: 211 ----VVIKPKQGFGGLGGRYVLPTALANV-NAFYRRCPGKL-IFGCGGVYTGEDAFLHVL 264
Query: 415 AGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVG 458
AGA++VQ+ TA GPA+ ++ AEL + + + G++++ E G
Sbjct: 265 AGASMVQVGTALHEEGPAIFERLTAELLDVMAKKGYQTLDEFRG 308
>pdb|1JRB|A Chain A, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRB|B Chain B, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 384 LKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443
++ Y + +I +IG GGI +G+DA+ + GAT++Q+ TA GPA+ +I EL E
Sbjct: 232 VRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEE 291
Query: 444 CLERDGFKSIIEAVG 458
+ + G++SI + G
Sbjct: 292 IMNQKGYQSIADFHG 306
>pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1JUE|A Chain A, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|1JUE|B Chain B, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|2BSL|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BSL|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BX7|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
pdb|2BX7|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
Length = 311
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 384 LKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443
++ Y + +I +IG GGI +G+DA+ + GAT++Q+ TA GPA+ +I EL E
Sbjct: 232 VRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEE 291
Query: 444 CLERDGFKSIIEAVG 458
+ + G++SI + G
Sbjct: 292 IMNQKGYQSIADFHG 306
>pdb|1JQX|A Chain A, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQX|B Chain B, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 384 LKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443
++ Y + +I +IG GGI +G+DA+ + GAT++Q+ TA GPA+ +I EL E
Sbjct: 232 VRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEE 291
Query: 444 CLERDGFKSIIEAVG 458
+ + G++SI + G
Sbjct: 292 IMNQKGYQSIADFHG 306
>pdb|1JUB|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JUB|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1OVD|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
pdb|1OVD|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
Length = 311
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 384 LKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443
++ Y + +I +IG GGI +G+DA+ + GAT++Q+ TA GPA+ +I EL E
Sbjct: 232 VRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEE 291
Query: 444 CLERDGFKSIIEAVG 458
+ + G++SI + G
Sbjct: 292 IMNQKGYQSIADFHG 306
>pdb|1JQV|A Chain A, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQV|B Chain B, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 384 LKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443
++ Y + +I +IG GGI +G+DA+ + GAT++Q+ TA GPA+ +I EL E
Sbjct: 232 VRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEE 291
Query: 444 CLERDGFKSIIEAVG 458
+ + G++SI + G
Sbjct: 292 IMNQKGYQSIADFHG 306
>pdb|2E68|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E68|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E6A|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6A|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6D|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6D|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6F|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
pdb|2E6F|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
Length = 314
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 397 LIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEA 456
+ GCGG+ SGEDA+ I AGA++VQ+ TA GP + +++ EL E + R G++++ E
Sbjct: 247 VFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGYRTLEEF 306
Query: 457 VG 458
G
Sbjct: 307 RG 308
>pdb|1JRC|A Chain A, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRC|B Chain B, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 384 LKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443
++ Y + +I +IG GGI +G+DA+ + GAT++Q+ TA GPA+ +I EL E
Sbjct: 232 VRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEE 291
Query: 444 CLERDGFKSIIEAVG 458
+ + G++SI + G
Sbjct: 292 IMNQKGYQSIADFHG 306
>pdb|3C3N|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
Length = 312
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 397 LIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEA 456
+ GCGG+ SGEDA+ I AGA++VQ+ TA GP + +++ EL E + R G++++ E
Sbjct: 245 VFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGYRTLEEF 304
Query: 457 VG 458
G
Sbjct: 305 RG 306
>pdb|2DJL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Succinate
pdb|2DJL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Succinate
pdb|2DJX|A Chain A, Crystal Structure Of Native Trypanosoma Cruzi
Dihydroorotate Dehydrogenase
pdb|2DJX|B Chain B, Crystal Structure Of Native Trypanosoma Cruzi
Dihydroorotate Dehydrogenase
Length = 314
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 397 LIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEA 456
+ GCGG+ SGEDA+ I AGA++VQ+ TA GP + +++ EL E + R G++++ E
Sbjct: 247 VFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGYRTLEEF 306
Query: 457 VG 458
G
Sbjct: 307 RG 308
>pdb|3TRO|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
pdb|3TRO|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
Length = 354
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKS 452
GK+ + GCGG+ +GEDA+ + AGA++VQ+ TA GP++ ++ +EL + + +++
Sbjct: 277 GKL-IFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQT 335
Query: 453 IIEAVG 458
+ E G
Sbjct: 336 LDEFRG 341
>pdb|3TJX|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
pdb|3TJX|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
Length = 354
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKS 452
GK+ + GCGG+ +GEDA+ + AGA++VQ+ TA GP++ ++ +EL + + +++
Sbjct: 277 GKL-IFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQT 335
Query: 453 IIEAVG 458
+ E G
Sbjct: 336 LDEFRG 341
>pdb|3GYE|A Chain A, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GYE|B Chain B, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GZ3|A Chain A, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|3GZ3|B Chain B, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|4EF8|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF8|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF9|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
pdb|4EF9|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
Length = 354
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKS 452
GK+ + GCGG+ +GEDA+ + AGA++VQ+ TA GP++ ++ +EL + + +++
Sbjct: 277 GKL-IFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQT 335
Query: 453 IIEAVG 458
+ E G
Sbjct: 336 LDEFRG 341
>pdb|3MHU|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MHU|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MJY|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3MJY|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3TQ0|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|3TQ0|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
Length = 346
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKS 452
GK+ + GCGG+ +GEDA+ + AGA++VQ+ TA GP++ ++ +EL + + +++
Sbjct: 277 GKL-IFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQT 335
Query: 453 IIEAVG 458
+ E G
Sbjct: 336 LDEFRG 341
>pdb|3OIX|A Chain A, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|B Chain B, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|C Chain C, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|D Chain D, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
Length = 345
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSI 453
I +IG GG+ +G DA+ I GA++VQ+ TA GP + +I EL + G++++
Sbjct: 276 IQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMTEKGYETL 334
>pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions
Length = 311
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 317 PLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS-RPDPVSKNPVAKETXXXXXXX 375
PL VK++P+++ D+ IA A DGL + NT + R D ++ P+
Sbjct: 166 PLYVKLSPNVT--DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGP 223
Query: 376 XXXXXNNILKEMYLLTRG-KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALI 434
LK ++ + + IP+IG GG+++ +D AGA+ V + TA + P +
Sbjct: 224 AIKPVA--LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTA-NFADPFVC 280
Query: 435 PQIKAELAECLER---DGFKSIIEAV 457
P+I +L E +++ + +S+I+ V
Sbjct: 281 PKIIDKLPELMDQYRIESLESLIQEV 306
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNNILK 385
L+KED E +A+ + G+++SN + D VS + A L+
Sbjct: 226 LTKEDAE----LAMKHNVQGIVVSNHGGRQLDEVSASIDA------------------LR 263
Query: 386 EMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA--------LIPQI 437
E+ +GKI + GG+ +G D + + GA + L +G ++ +
Sbjct: 264 EVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDIL 323
Query: 438 KAELAECLERDGFKSIIE 455
AEL C+ G +S+ E
Sbjct: 324 TAELHRCMTLSGCQSVAE 341
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETXXXXXXXXXXXXNNILK 385
L+KED E +A+ + G+++SN + D VS + A L+
Sbjct: 226 LTKEDAE----LAMKHNVQGIVVSNHGGRQLDEVSASIDA------------------LR 263
Query: 386 EMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA--------LIPQI 437
E+ +GKI + GG+ +G D + + GA + L +G ++ +
Sbjct: 264 EVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDIL 323
Query: 438 KAELAECLERDGFKSIIE 455
AEL C+ G +S+ E
Sbjct: 324 TAELHRCMTLSGCQSVAE 341
>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|1YPF|B Chain B, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|2A1Y|A Chain A, Crystal Structure Of Guac-Gmp Complex From Bacillus
Anthracis At 2.26 A Resolution
Length = 336
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 396 PLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDG 449
P+I GGI + D + IR GAT+V + + FA G P E +E+DG
Sbjct: 212 PIIADGGIRTNGDVAKSIRFGATMVMIGSLFA--GHEESP------GETIEKDG 257
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 384 LKEMYLLT-RGKIPLIGCGGISSGEDAYRKIRAG---ATLVQLYTAFAYGGPALIPQIKA 439
LKE + T RG+ L+ GG+ SG+ +KI+ A FA G A + Q
Sbjct: 39 LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADY 98
Query: 440 ELAECLERDGFKSIIEAVGAD 460
E+AE L R G I+ A D
Sbjct: 99 EVAEYLRRKGKPVILVATKVD 119
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 40/170 (23%)
Query: 263 VHTLSQYADYLVINVSSPNTPGLRMLQ-----GRKQLKDLVKKVQAA---------RDEM 308
+ TLS +A V V+S PG+R Q R + LV++ + A ++
Sbjct: 42 IMTLSSWATSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVWKDV 100
Query: 309 QWGEE-GPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKE 367
W + P+LVK ++ ED A +AV G+I+SN + D V +A
Sbjct: 101 AWLQTITSLPILVK--GVITAED----ARLAVQHGAAGIIVSNHGARQLDYVPATIMA-- 152
Query: 368 TXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGA 417
L+E+ +G+IP+ GG+ G D ++ + GA
Sbjct: 153 ----------------LEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGA 186
>pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
pdb|2Z6J|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
Length = 332
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426
IP+I GGI+ GE A GA VQ+ T F
Sbjct: 163 IPVIAAGGIADGEGAAAGFMLGAEAVQVGTRF 194
>pdb|1VJI|A Chain A, Gene Product Of At1g76680 From Arabidopsis Thaliana
pdb|2Q3R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g76680 From Arabidopsis Thaliana
Length = 372
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 188 GAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIG 247
G++ NRC F E + AVAK +G +L SP + G PG LG+ +
Sbjct: 207 GSLQNRCKFPLEIVDAVAKEIGPDRVGIRL--------SPFADYMESGDTNPGALGLYMA 258
Query: 248 KN 249
++
Sbjct: 259 ES 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,294,339
Number of Sequences: 62578
Number of extensions: 461492
Number of successful extensions: 1126
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 60
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)