Query 012517
Match_columns 462
No_of_seqs 338 out of 2667
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1436 Dihydroorotate dehydro 100.0 6.4E-95 1.4E-99 702.6 25.0 362 78-461 36-398 (398)
2 PLN02826 dihydroorotate dehydr 100.0 3.2E-91 7E-96 723.1 38.6 406 55-462 4-409 (409)
3 COG0167 PyrD Dihydroorotate de 100.0 5.4E-77 1.2E-81 592.9 29.4 302 125-462 1-309 (310)
4 TIGR01036 pyrD_sub2 dihydrooro 100.0 4.7E-71 1E-75 562.1 29.9 325 88-441 2-335 (335)
5 PRK05286 dihydroorotate dehydr 100.0 6.4E-69 1.4E-73 549.0 33.1 333 87-449 3-344 (344)
6 cd04738 DHOD_2_like Dihydrooro 100.0 4.5E-64 9.7E-69 510.3 32.7 322 91-441 1-327 (327)
7 PRK02506 dihydroorotate dehydr 100.0 2.9E-62 6.2E-67 493.4 29.0 297 125-459 1-306 (310)
8 PF01180 DHO_dh: Dihydroorotat 100.0 2.7E-59 5.9E-64 468.9 24.2 291 125-445 1-295 (295)
9 cd04739 DHOD_like Dihydroorota 100.0 6.5E-58 1.4E-62 464.6 32.3 294 125-459 1-302 (325)
10 cd04741 DHOD_1A_like Dihydroor 100.0 3.7E-58 8E-63 460.5 29.9 281 128-445 1-294 (294)
11 PRK07259 dihydroorotate dehydr 100.0 1.2E-57 2.5E-62 458.3 33.3 294 125-462 1-301 (301)
12 PLN02495 oxidoreductase, actin 100.0 9.9E-57 2.2E-61 461.7 32.0 302 122-462 7-338 (385)
13 cd04740 DHOD_1B_like Dihydroor 100.0 5E-55 1.1E-59 438.0 32.8 290 127-460 1-296 (296)
14 TIGR01037 pyrD_sub1_fam dihydr 100.0 5.3E-54 1.1E-58 431.4 32.1 292 126-461 1-300 (300)
15 PRK08318 dihydropyrimidine deh 100.0 1.3E-53 2.7E-58 447.5 31.4 297 125-461 3-320 (420)
16 cd02940 DHPD_FMN Dihydropyrimi 100.0 4.2E-53 9.1E-58 425.0 29.7 278 125-441 1-299 (299)
17 PRK07565 dihydroorotate dehydr 100.0 1.1E-51 2.3E-56 420.9 29.4 294 125-460 2-305 (334)
18 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 6.5E-50 1.4E-54 399.4 28.7 277 128-440 1-289 (289)
19 KOG1799 Dihydropyrimidine dehy 100.0 1.4E-34 3E-39 284.4 7.3 309 122-460 99-422 (471)
20 TIGR00736 nifR3_rel_arch TIM-b 99.9 2.6E-24 5.7E-29 207.9 18.7 153 240-429 68-226 (231)
21 cd02803 OYE_like_FMN_family Ol 99.9 2.1E-22 4.6E-27 204.4 24.2 282 127-439 3-326 (327)
22 PRK13523 NADPH dehydrogenase N 99.9 2.4E-22 5.1E-27 205.2 23.8 280 127-445 6-326 (337)
23 TIGR00737 nifR3_yhdG putative 99.9 1.2E-21 2.5E-26 198.9 23.3 227 131-441 2-239 (319)
24 COG1902 NemA NADH:flavin oxido 99.9 3.5E-21 7.6E-26 197.6 25.9 284 127-443 9-337 (363)
25 PRK10415 tRNA-dihydrouridine s 99.9 1.2E-21 2.7E-26 198.9 22.0 167 240-441 65-241 (321)
26 cd04733 OYE_like_2_FMN Old yel 99.9 4.5E-21 9.8E-26 196.1 26.3 288 127-440 4-338 (338)
27 cd02932 OYE_YqiM_FMN Old yello 99.9 6.4E-21 1.4E-25 194.8 24.4 279 127-440 4-336 (336)
28 cd04734 OYE_like_3_FMN Old yel 99.9 1.3E-20 2.7E-25 193.2 25.8 289 127-442 4-333 (343)
29 cd02931 ER_like_FMN Enoate red 99.9 2.6E-20 5.7E-25 193.4 27.0 288 127-442 4-353 (382)
30 cd04735 OYE_like_4_FMN Old yel 99.9 1E-20 2.2E-25 194.6 23.3 286 127-442 4-331 (353)
31 cd02911 arch_FMN Archeal FMN-b 99.9 1.1E-20 2.5E-25 183.6 22.0 153 241-438 74-232 (233)
32 TIGR02151 IPP_isom_2 isopenten 99.9 3.2E-20 6.9E-25 189.4 25.7 272 120-460 37-328 (333)
33 cd02811 IDI-2_FMN Isopentenyl- 99.9 5.9E-20 1.3E-24 186.9 27.1 203 240-457 113-325 (326)
34 TIGR00742 yjbN tRNA dihydrouri 99.9 1.1E-20 2.3E-25 191.5 20.4 172 240-441 55-240 (318)
35 cd02809 alpha_hydroxyacid_oxid 99.9 1.7E-19 3.7E-24 181.6 28.9 260 96-457 22-298 (299)
36 cd04747 OYE_like_5_FMN Old yel 99.9 4.7E-20 1E-24 189.7 24.6 279 127-443 4-347 (361)
37 PRK05437 isopentenyl pyrophosp 99.9 1.2E-19 2.7E-24 186.3 27.0 274 120-460 44-335 (352)
38 PRK10550 tRNA-dihydrouridine s 99.9 1E-20 2.3E-25 191.2 18.6 168 240-439 63-239 (312)
39 cd02930 DCR_FMN 2,4-dienoyl-Co 99.9 5.4E-20 1.2E-24 189.3 23.8 282 127-442 4-324 (353)
40 cd02933 OYE_like_FMN Old yello 99.9 6.5E-20 1.4E-24 187.5 23.7 272 127-440 5-330 (338)
41 PF00724 Oxidored_FMN: NADH:fl 99.9 1.1E-20 2.5E-25 193.4 17.9 286 127-442 5-339 (341)
42 PRK11815 tRNA-dihydrouridine s 99.9 3.3E-20 7.1E-25 189.3 21.0 172 240-441 65-250 (333)
43 cd02929 TMADH_HD_FMN Trimethyl 99.8 5E-19 1.1E-23 183.1 24.8 284 127-442 11-337 (370)
44 COG0042 tRNA-dihydrouridine sy 99.8 3.4E-19 7.3E-24 181.0 21.6 225 129-437 3-241 (323)
45 cd02801 DUS_like_FMN Dihydrour 99.8 4.1E-19 8.9E-24 171.3 17.3 166 240-440 55-229 (231)
46 PRK10605 N-ethylmaleimide redu 99.8 3.2E-18 6.9E-23 176.5 24.6 272 127-441 6-338 (362)
47 PRK08255 salicylyl-CoA 5-hydro 99.8 1.9E-18 4.2E-23 194.0 24.6 281 127-441 402-734 (765)
48 PLN02411 12-oxophytodienoate r 99.8 1.4E-17 3E-22 173.4 24.6 283 127-441 15-359 (391)
49 cd02922 FCB2_FMN Flavocytochro 99.8 7.9E-17 1.7E-21 164.8 28.1 269 98-457 24-342 (344)
50 cd04737 LOX_like_FMN L-Lactate 99.8 8.5E-17 1.8E-21 164.7 23.5 288 98-459 32-349 (351)
51 KOG2335 tRNA-dihydrouridine sy 99.8 3.5E-17 7.7E-22 164.2 19.9 164 239-434 73-243 (358)
52 PF01207 Dus: Dihydrouridine s 99.8 5.6E-18 1.2E-22 171.3 13.8 162 240-436 54-225 (309)
53 PLN02535 glycolate oxidase 99.7 1.3E-15 2.8E-20 156.4 24.7 300 87-459 16-351 (364)
54 TIGR02708 L_lactate_ox L-lacta 99.7 1.6E-14 3.5E-19 148.4 25.6 290 98-459 40-356 (367)
55 PRK11197 lldD L-lactate dehydr 99.6 6.5E-13 1.4E-17 137.2 27.8 292 98-458 30-372 (381)
56 PLN02493 probable peroxisomal 99.6 2.3E-13 4.9E-18 139.8 24.1 299 87-458 14-351 (367)
57 cd03332 LMO_FMN L-Lactate 2-mo 99.6 1.1E-12 2.3E-17 135.8 28.0 290 98-458 45-380 (383)
58 PF01070 FMN_dh: FMN-dependent 99.6 2.6E-13 5.7E-18 139.7 22.3 122 314-459 224-353 (356)
59 PLN02979 glycolate oxidase 99.6 7.8E-13 1.7E-17 135.0 24.4 121 314-458 222-350 (366)
60 cd04736 MDH_FMN Mandelate dehy 99.5 5.2E-12 1.1E-16 129.7 28.2 286 98-456 24-359 (361)
61 PRK05458 guanosine 5'-monophos 99.5 1.2E-11 2.6E-16 125.5 26.3 240 120-458 21-310 (326)
62 TIGR01306 GMP_reduct_2 guanosi 99.4 2.2E-11 4.9E-16 123.1 23.9 240 121-458 19-307 (321)
63 PRK00507 deoxyribose-phosphate 99.4 2.4E-13 5.1E-18 131.2 8.7 121 268-426 86-211 (221)
64 cd02808 GltS_FMN Glutamate syn 99.4 1.7E-11 3.7E-16 128.0 18.4 154 284-458 191-386 (392)
65 cd04722 TIM_phosphate_binding 99.4 7.1E-11 1.5E-15 109.0 20.3 189 146-424 12-200 (200)
66 KOG0538 Glycolate oxidase [Ene 99.3 1.4E-09 2.9E-14 107.3 24.7 120 314-457 222-349 (363)
67 cd00381 IMPDH IMPDH: The catal 99.3 1E-09 2.2E-14 112.0 24.8 247 114-459 9-319 (325)
68 PRK08649 inosine 5-monophospha 99.3 3.6E-10 7.8E-15 116.9 19.8 275 121-459 32-363 (368)
69 TIGR03151 enACPred_II putative 99.3 6.3E-10 1.4E-14 112.7 20.9 185 134-428 9-195 (307)
70 COG1304 idi Isopentenyl diphos 99.3 1.9E-10 4E-15 118.3 17.1 107 335-459 232-346 (360)
71 TIGR01304 IMP_DH_rel_2 IMP deh 99.2 1.4E-09 2.9E-14 112.4 21.4 278 114-458 20-364 (369)
72 PF03060 NMO: Nitronate monoox 99.2 4.9E-09 1.1E-13 107.2 22.4 207 134-442 9-239 (330)
73 cd04730 NPD_like 2-Nitropropan 99.2 4.1E-09 9E-14 102.0 20.6 137 241-429 55-191 (236)
74 PRK06843 inosine 5-monophospha 99.2 1.2E-08 2.7E-13 106.2 25.2 146 241-427 143-289 (404)
75 KOG2333 Uncharacterized conser 99.1 1.8E-09 4E-14 111.7 16.2 169 240-440 320-501 (614)
76 PRK13125 trpA tryptophan synth 99.1 3.7E-09 8E-14 103.7 16.5 161 252-428 16-219 (244)
77 TIGR01305 GMP_reduct_1 guanosi 99.1 9.2E-08 2E-12 96.7 26.1 235 122-458 26-328 (343)
78 PRK01033 imidazole glycerol ph 98.9 3.1E-08 6.7E-13 98.0 16.0 143 269-451 96-257 (258)
79 PLN02274 inosine-5'-monophosph 98.9 1.5E-07 3.2E-12 101.4 20.3 145 241-427 238-384 (505)
80 cd04728 ThiG Thiazole synthase 98.8 6E-07 1.3E-11 87.2 21.3 210 129-432 2-214 (248)
81 PF00478 IMPDH: IMP dehydrogen 98.8 4.4E-07 9.5E-12 93.1 21.6 249 123-459 23-335 (352)
82 cd04731 HisF The cyclase subun 98.8 8.5E-08 1.8E-12 93.7 15.5 132 269-438 93-237 (243)
83 PRK05096 guanosine 5'-monophos 98.8 1.2E-06 2.5E-11 88.8 23.3 178 241-458 98-329 (346)
84 PRK14024 phosphoribosyl isomer 98.8 5.8E-08 1.3E-12 95.1 13.0 133 269-438 97-236 (241)
85 PRK00208 thiG thiazole synthas 98.7 2E-06 4.4E-11 83.6 21.2 210 128-432 2-214 (250)
86 COG2070 Dioxygenases related t 98.7 8.3E-08 1.8E-12 98.3 12.0 81 332-428 137-218 (336)
87 TIGR01302 IMP_dehydrog inosine 98.7 9E-07 2E-11 94.3 20.2 125 268-427 235-360 (450)
88 cd04743 NPD_PKS 2-Nitropropane 98.7 9.5E-07 2.1E-11 89.6 19.3 135 241-428 57-207 (320)
89 PTZ00314 inosine-5'-monophosph 98.7 8.1E-07 1.8E-11 95.6 19.9 177 241-458 231-466 (495)
90 TIGR03572 WbuZ glycosyl amidat 98.7 4.3E-07 9.3E-12 88.1 14.8 120 269-427 96-231 (232)
91 PRK13585 1-(5-phosphoribosyl)- 98.7 6E-07 1.3E-11 87.5 15.8 89 330-440 150-238 (241)
92 PF01645 Glu_synthase: Conserv 98.7 5.1E-07 1.1E-11 93.2 15.5 152 243-427 151-307 (368)
93 cd04742 NPD_FabD 2-Nitropropan 98.7 2.8E-06 6E-11 89.1 21.2 35 394-428 219-253 (418)
94 TIGR00262 trpA tryptophan synt 98.7 2E-06 4.4E-11 85.0 19.3 164 258-428 25-232 (256)
95 PRK07107 inosine 5-monophospha 98.6 1.1E-06 2.5E-11 94.5 18.0 167 258-458 242-471 (502)
96 COG0069 GltB Glutamate synthas 98.6 3.7E-07 7.9E-12 96.5 13.6 189 242-460 250-477 (485)
97 cd04731 HisF The cyclase subun 98.6 1.9E-07 4.2E-12 91.2 10.6 90 330-441 28-117 (243)
98 PRK01130 N-acetylmannosamine-6 98.6 1.2E-06 2.6E-11 84.4 15.1 127 259-427 80-206 (221)
99 cd04732 HisA HisA. Phosphorib 98.6 6E-07 1.3E-11 86.9 13.0 82 329-432 146-227 (234)
100 PRK11750 gltB glutamate syntha 98.6 5.3E-07 1.2E-11 105.3 14.6 164 277-460 968-1169(1485)
101 cd04729 NanE N-acetylmannosami 98.6 2.3E-06 4.9E-11 82.4 16.6 119 269-427 92-210 (219)
102 PLN02591 tryptophan synthase 98.6 2.5E-06 5.5E-11 84.0 17.1 163 258-428 17-223 (250)
103 PRK09853 putative selenate red 98.6 8E-07 1.7E-11 102.0 15.4 287 123-443 39-396 (1019)
104 PRK04180 pyridoxal biosynthesi 98.6 6.7E-08 1.4E-12 95.7 5.8 144 260-427 30-238 (293)
105 TIGR00735 hisF imidazoleglycer 98.6 8.7E-07 1.9E-11 87.4 13.5 107 319-451 143-252 (254)
106 TIGR03315 Se_ygfK putative sel 98.5 9.5E-07 2.1E-11 101.6 15.1 290 123-445 38-396 (1012)
107 CHL00200 trpA tryptophan synth 98.5 5E-06 1.1E-10 82.5 18.3 162 258-427 30-235 (263)
108 TIGR01303 IMP_DH_rel_1 IMP deh 98.5 2.3E-06 4.9E-11 91.6 16.8 135 258-426 225-360 (475)
109 TIGR02814 pfaD_fam PfaD family 98.5 6.2E-06 1.4E-10 87.0 19.5 35 394-428 224-258 (444)
110 TIGR00735 hisF imidazoleglycer 98.5 5.4E-07 1.2E-11 88.9 11.0 90 330-441 31-120 (254)
111 cd04724 Tryptophan_synthase_al 98.5 3.3E-06 7.1E-11 82.9 16.4 48 377-427 172-219 (242)
112 PRK05567 inosine 5'-monophosph 98.5 3E-06 6.4E-11 91.2 17.5 176 241-458 218-454 (486)
113 PRK00748 1-(5-phosphoribosyl)- 98.5 1.3E-06 2.7E-11 84.7 13.2 79 330-429 147-226 (233)
114 PRK02083 imidazole glycerol ph 98.5 2.7E-06 5.9E-11 83.8 15.5 149 269-451 96-250 (253)
115 TIGR00007 phosphoribosylformim 98.5 1.3E-06 2.8E-11 84.5 12.9 79 330-429 146-224 (230)
116 KOG2334 tRNA-dihydrouridine sy 98.5 1.2E-06 2.6E-11 90.1 12.8 159 241-433 83-251 (477)
117 PRK02083 imidazole glycerol ph 98.5 1.1E-06 2.3E-11 86.6 10.8 90 330-441 31-120 (253)
118 cd00331 IGPS Indole-3-glycerol 98.5 6.3E-06 1.4E-10 79.2 15.8 150 256-432 33-209 (217)
119 CHL00162 thiG thiamin biosynth 98.4 0.00013 2.8E-09 71.3 23.1 211 127-428 7-223 (267)
120 TIGR01304 IMP_DH_rel_2 IMP deh 98.4 7.3E-06 1.6E-10 85.0 14.8 125 290-449 117-252 (369)
121 cd00945 Aldolase_Class_I Class 98.4 0.00011 2.4E-09 68.3 21.2 144 241-422 50-200 (201)
122 PF05690 ThiG: Thiazole biosyn 98.3 4.9E-05 1.1E-09 73.4 18.5 206 129-428 1-209 (247)
123 PRK11840 bifunctional sulfur c 98.3 0.00015 3.3E-09 73.4 22.3 212 127-432 74-286 (326)
124 KOG0134 NADH:flavin oxidoreduc 98.3 1.5E-05 3.3E-10 82.3 14.0 169 255-442 171-366 (400)
125 PRK08883 ribulose-phosphate 3- 98.2 0.00026 5.6E-09 68.6 21.3 155 241-447 60-217 (220)
126 TIGR01769 GGGP geranylgeranylg 98.2 4.8E-05 1E-09 72.8 16.0 45 377-423 161-205 (205)
127 PRK07807 inosine 5-monophospha 98.2 5.1E-05 1.1E-09 81.4 17.7 133 258-426 227-362 (479)
128 COG0159 TrpA Tryptophan syntha 98.2 8.5E-05 1.9E-09 73.4 17.5 163 258-428 32-238 (265)
129 cd04732 HisA HisA. Phosphorib 98.2 1.1E-05 2.3E-10 78.1 10.7 90 330-441 30-119 (234)
130 PRK13111 trpA tryptophan synth 98.1 0.00094 2E-08 66.3 22.9 209 145-428 25-233 (258)
131 PRK08649 inosine 5-monophospha 98.1 2.2E-05 4.8E-10 81.5 11.7 102 290-425 116-217 (368)
132 TIGR00259 thylakoid_BtpA membr 98.1 0.00043 9.2E-09 68.4 20.1 149 241-430 81-234 (257)
133 PRK13587 1-(5-phosphoribosyl)- 98.1 6.4E-05 1.4E-09 73.4 14.0 77 330-427 149-225 (234)
134 TIGR03128 RuMP_HxlA 3-hexulose 98.1 0.00019 4.1E-09 68.2 16.9 127 269-442 76-203 (206)
135 PF04131 NanE: Putative N-acet 98.1 0.00019 4.2E-09 67.3 16.3 120 269-436 64-184 (192)
136 PF00290 Trp_syntA: Tryptophan 98.1 0.00019 4.2E-09 71.1 16.9 163 258-428 25-231 (259)
137 PF00977 His_biosynth: Histidi 98.0 2.1E-05 4.6E-10 76.4 9.4 131 268-430 94-226 (229)
138 COG0274 DeoC Deoxyribose-phosp 98.0 4.3E-05 9.4E-10 73.4 10.7 125 263-424 84-213 (228)
139 cd04727 pdxS PdxS is a subunit 98.0 0.00029 6.4E-09 69.9 16.8 154 258-446 75-246 (283)
140 cd04723 HisA_HisF Phosphoribos 98.0 8.6E-05 1.9E-09 72.4 13.0 79 329-430 146-224 (233)
141 COG0106 HisA Phosphoribosylfor 98.0 0.00026 5.6E-09 68.9 16.0 85 330-436 148-233 (241)
142 cd00958 DhnA Class I fructose- 98.0 0.00038 8.2E-09 67.6 17.2 134 263-442 82-231 (235)
143 PRK00748 1-(5-phosphoribosyl)- 98.0 4.4E-05 9.6E-10 73.8 10.5 90 330-441 31-120 (233)
144 PRK07226 fructose-bisphosphate 98.0 0.00027 5.8E-09 70.4 16.3 147 263-457 99-261 (267)
145 TIGR00126 deoC deoxyribose-pho 98.0 0.00017 3.7E-09 69.4 13.8 123 266-424 80-205 (211)
146 PRK00278 trpC indole-3-glycero 97.9 0.0005 1.1E-08 68.3 16.6 113 269-428 133-245 (260)
147 COG0107 HisF Imidazoleglycerol 97.9 7.2E-05 1.6E-09 71.9 9.8 90 330-441 31-120 (256)
148 PLN02334 ribulose-phosphate 3- 97.9 0.0016 3.5E-08 63.2 19.6 154 242-446 68-223 (229)
149 TIGR03572 WbuZ glycosyl amidat 97.9 9.2E-05 2E-09 71.8 10.8 89 330-440 31-119 (232)
150 TIGR00343 pyridoxal 5'-phospha 97.9 0.00014 3E-09 72.3 12.0 48 379-428 184-233 (287)
151 PRK07695 transcriptional regul 97.9 0.00018 3.9E-09 68.3 12.6 90 335-445 108-197 (201)
152 PF04481 DUF561: Protein of un 97.9 0.00037 8E-09 66.5 14.3 153 241-426 63-217 (242)
153 TIGR00734 hisAF_rel hisA/hisF 97.9 8.2E-05 1.8E-09 72.1 10.2 76 330-427 142-217 (221)
154 TIGR01949 AroFGH_arch predicte 97.9 0.00048 1E-08 68.1 15.9 123 295-456 122-256 (258)
155 PRK09140 2-dehydro-3-deoxy-6-p 97.9 0.00035 7.6E-09 67.0 14.1 143 258-428 23-184 (206)
156 PF03437 BtpA: BtpA family; I 97.8 0.0023 4.9E-08 63.3 19.1 148 241-430 82-234 (254)
157 COG2022 ThiG Uncharacterized e 97.8 0.0024 5.2E-08 61.6 18.5 213 126-431 6-220 (262)
158 cd00959 DeoC 2-deoxyribose-5-p 97.8 0.00099 2.2E-08 63.6 16.1 117 269-421 82-201 (203)
159 cd02812 PcrB_like PcrB_like pr 97.8 0.00015 3.3E-09 70.0 10.2 88 325-438 131-218 (219)
160 TIGR01163 rpe ribulose-phospha 97.8 0.0058 1.3E-07 57.8 21.0 130 258-433 70-202 (210)
161 PRK14024 phosphoribosyl isomer 97.7 0.00019 4.1E-09 70.4 10.5 90 330-442 33-122 (241)
162 PRK01033 imidazole glycerol ph 97.7 0.00023 5E-09 70.5 10.8 90 330-441 31-120 (258)
163 PRK13585 1-(5-phosphoribosyl)- 97.7 0.00022 4.8E-09 69.4 10.4 90 330-441 33-122 (241)
164 PRK14114 1-(5-phosphoribosyl)- 97.7 0.00022 4.8E-09 70.0 10.1 87 330-438 145-237 (241)
165 cd04726 KGPDC_HPS 3-Keto-L-gul 97.7 0.0023 5E-08 60.3 16.5 124 260-432 70-194 (202)
166 PRK13586 1-(5-phosphoribosyl)- 97.7 0.0011 2.3E-08 64.8 14.2 78 330-430 147-224 (232)
167 COG0036 Rpe Pentose-5-phosphat 97.6 0.015 3.3E-07 56.0 21.1 201 138-437 8-210 (220)
168 PF01884 PcrB: PcrB family; I 97.6 7.4E-05 1.6E-09 72.5 5.4 58 381-442 171-228 (230)
169 PTZ00170 D-ribulose-5-phosphat 97.6 0.0068 1.5E-07 59.0 18.8 156 242-447 68-223 (228)
170 PRK05283 deoxyribose-phosphate 97.6 0.00098 2.1E-08 65.8 12.8 117 266-419 93-220 (257)
171 PRK09722 allulose-6-phosphate 97.6 0.014 3E-07 56.9 20.3 155 241-446 61-220 (229)
172 PRK13587 1-(5-phosphoribosyl)- 97.6 0.00045 9.8E-09 67.5 10.1 90 330-441 32-122 (234)
173 cd00429 RPE Ribulose-5-phospha 97.6 0.014 3E-07 55.1 20.1 133 258-436 71-206 (211)
174 TIGR01919 hisA-trpF 1-(5-phosp 97.6 0.0006 1.3E-08 67.0 10.9 84 330-435 150-236 (243)
175 COG0214 SNZ1 Pyridoxine biosyn 97.5 0.00035 7.6E-09 67.2 8.6 54 393-446 205-278 (296)
176 PRK04128 1-(5-phosphoribosyl)- 97.5 0.00047 1E-08 67.1 9.8 87 330-440 31-117 (228)
177 PRK08005 epimerase; Validated 97.5 0.015 3.3E-07 55.9 20.0 140 241-432 60-199 (210)
178 PRK08745 ribulose-phosphate 3- 97.5 0.0098 2.1E-07 57.8 18.8 152 241-444 64-218 (223)
179 TIGR00007 phosphoribosylformim 97.5 0.00076 1.7E-08 65.2 10.9 90 330-441 29-118 (230)
180 PRK04169 geranylgeranylglycery 97.5 0.00025 5.4E-09 69.1 7.1 51 379-432 170-221 (232)
181 TIGR01768 GGGP-family geranylg 97.5 0.00022 4.8E-09 69.0 6.5 57 379-437 165-221 (223)
182 PRK14057 epimerase; Provisiona 97.4 0.015 3.2E-07 57.5 18.6 165 242-449 78-245 (254)
183 cd03319 L-Ala-DL-Glu_epimerase 97.4 0.012 2.6E-07 59.7 18.6 145 241-437 125-271 (316)
184 PRK08091 ribulose-phosphate 3- 97.4 0.015 3.2E-07 56.7 18.2 152 241-442 70-224 (228)
185 cd00564 TMP_TenI Thiamine mono 97.4 0.0015 3.2E-08 60.6 10.9 82 335-436 108-190 (196)
186 COG3010 NanE Putative N-acetyl 97.4 0.0046 1E-07 58.7 13.9 132 258-435 86-219 (229)
187 PF00977 His_biosynth: Histidi 97.4 0.00062 1.3E-08 66.2 8.4 90 330-441 30-119 (229)
188 cd03316 MR_like Mandelate race 97.4 0.0061 1.3E-07 62.8 16.1 130 258-426 142-273 (357)
189 PRK05581 ribulose-phosphate 3- 97.4 0.051 1.1E-06 51.8 21.4 140 258-444 75-217 (220)
190 PLN02446 (5-phosphoribosyl)-5- 97.4 0.0014 3.1E-08 64.9 10.7 81 330-431 164-247 (262)
191 PLN02617 imidazole glycerol ph 97.3 0.0013 2.9E-08 71.5 11.3 95 330-450 439-534 (538)
192 TIGR00693 thiE thiamine-phosph 97.3 0.015 3.3E-07 54.6 16.9 47 380-428 139-185 (196)
193 cd00452 KDPG_aldolase KDPG and 97.3 0.0043 9.4E-08 58.5 12.9 141 258-427 17-175 (190)
194 PRK07028 bifunctional hexulose 97.3 0.011 2.3E-07 62.9 17.2 135 259-443 73-208 (430)
195 COG0134 TrpC Indole-3-glycerol 97.3 0.013 2.8E-07 57.8 16.4 152 258-435 70-247 (254)
196 PLN02617 imidazole glycerol ph 97.3 0.0014 2.9E-08 71.5 10.5 95 329-441 267-383 (538)
197 PRK06512 thiamine-phosphate py 97.3 0.04 8.7E-07 53.4 19.6 104 318-447 111-214 (221)
198 KOG1606 Stationary phase-induc 97.3 0.0011 2.4E-08 62.9 8.2 41 393-434 206-248 (296)
199 COG0107 HisF Imidazoleglycerol 97.3 0.0013 2.7E-08 63.5 8.6 95 330-450 156-251 (256)
200 COG0434 SgcQ Predicted TIM-bar 97.3 0.021 4.6E-07 55.4 16.9 145 241-430 87-239 (263)
201 PRK13813 orotidine 5'-phosphat 97.2 0.013 2.7E-07 56.2 15.6 136 258-446 71-213 (215)
202 PRK14114 1-(5-phosphoribosyl)- 97.2 0.0022 4.7E-08 63.0 10.2 86 330-438 31-116 (241)
203 PRK00043 thiE thiamine-phospha 97.2 0.0045 9.8E-08 58.7 12.1 59 381-443 148-206 (212)
204 COG1646 Predicted phosphate-bi 97.2 0.00088 1.9E-08 64.7 6.5 67 367-441 171-237 (240)
205 TIGR02129 hisA_euk phosphoribo 97.1 0.0027 5.9E-08 62.6 9.9 82 332-441 41-125 (253)
206 cd04723 HisA_HisF Phosphoribos 97.1 0.0029 6.4E-08 61.7 10.0 89 329-441 35-123 (233)
207 KOG2550 IMP dehydrogenase/GMP 97.1 0.0039 8.5E-08 64.5 11.1 125 268-426 262-386 (503)
208 PRK04128 1-(5-phosphoribosyl)- 97.1 0.0026 5.7E-08 61.9 9.2 73 330-428 144-216 (228)
209 PRK13398 3-deoxy-7-phosphohept 97.1 0.16 3.5E-06 50.7 22.1 94 314-426 133-234 (266)
210 PRK06552 keto-hydroxyglutarate 97.1 0.012 2.5E-07 56.9 13.5 144 258-427 26-187 (213)
211 PF00834 Ribul_P_3_epim: Ribul 97.1 0.0054 1.2E-07 58.6 11.1 137 241-427 59-198 (201)
212 TIGR01182 eda Entner-Doudoroff 97.1 0.038 8.2E-07 53.0 16.6 122 258-438 21-143 (204)
213 PLN02446 (5-phosphoribosyl)-5- 97.1 0.0038 8.2E-08 61.9 10.0 85 330-441 44-132 (262)
214 PF01791 DeoC: DeoC/LacD famil 97.0 0.0063 1.4E-07 59.3 11.5 123 268-426 88-233 (236)
215 PRK13586 1-(5-phosphoribosyl)- 97.0 0.0058 1.3E-07 59.7 10.4 89 330-441 31-119 (232)
216 PRK13307 bifunctional formalde 96.9 0.039 8.5E-07 57.9 16.9 128 269-445 250-378 (391)
217 cd03315 MLE_like Muconate lact 96.9 0.083 1.8E-06 52.2 18.4 146 241-437 76-223 (265)
218 PF00218 IGPS: Indole-3-glycer 96.9 0.018 3.9E-07 57.0 13.3 122 269-438 131-252 (254)
219 PRK04302 triosephosphate isome 96.8 0.068 1.5E-06 51.7 16.5 60 381-443 161-220 (223)
220 PRK06015 keto-hydroxyglutarate 96.8 0.0076 1.7E-07 57.6 9.4 77 317-421 5-81 (201)
221 TIGR02320 PEP_mutase phosphoen 96.8 0.39 8.4E-06 48.4 22.0 166 241-445 80-259 (285)
222 TIGR01919 hisA-trpF 1-(5-phosp 96.7 0.012 2.6E-07 57.8 10.3 89 330-441 32-120 (243)
223 PRK07114 keto-hydroxyglutarate 96.7 0.0078 1.7E-07 58.4 8.8 98 327-457 25-126 (222)
224 TIGR01182 eda Entner-Doudoroff 96.7 0.011 2.4E-07 56.6 9.7 76 317-420 9-84 (204)
225 PRK07114 keto-hydroxyglutarate 96.7 0.034 7.5E-07 54.0 13.2 149 252-427 25-192 (222)
226 PF01081 Aldolase: KDPG and KH 96.6 0.011 2.4E-07 56.4 9.2 77 317-421 9-85 (196)
227 PRK02615 thiamine-phosphate py 96.5 0.026 5.7E-07 58.3 11.9 102 319-446 242-343 (347)
228 PF00478 IMPDH: IMP dehydrogen 96.5 0.023 5E-07 58.7 11.1 106 292-424 73-178 (352)
229 cd00331 IGPS Indole-3-glycerol 96.4 0.025 5.4E-07 54.2 10.2 89 315-427 10-105 (217)
230 PRK07455 keto-hydroxyglutarate 96.4 0.016 3.4E-07 54.7 8.5 66 336-427 119-184 (187)
231 TIGR02129 hisA_euk phosphoribo 96.4 0.018 3.9E-07 56.9 9.1 75 330-427 158-236 (253)
232 PRK09427 bifunctional indole-3 96.4 0.065 1.4E-06 57.4 14.0 139 270-457 133-271 (454)
233 KOG1799 Dihydropyrimidine dehy 96.4 0.00061 1.3E-08 68.9 -1.2 86 367-457 20-105 (471)
234 COG0800 Eda 2-keto-3-deoxy-6-p 96.3 0.023 5E-07 54.4 9.3 74 316-420 16-89 (211)
235 PRK06552 keto-hydroxyglutarate 96.3 0.023 5.1E-07 54.8 9.5 79 317-421 14-93 (213)
236 cd00381 IMPDH IMPDH: The catal 96.3 0.045 9.9E-07 56.1 12.2 69 330-422 94-162 (325)
237 PRK05848 nicotinate-nucleotide 96.3 0.038 8.2E-07 55.3 11.2 34 393-427 228-261 (273)
238 PRK13957 indole-3-glycerol-pho 96.3 0.19 4.2E-06 49.5 15.8 120 269-437 124-243 (247)
239 PRK13396 3-deoxy-7-phosphohept 96.3 0.18 3.9E-06 52.2 16.3 122 264-423 179-306 (352)
240 PRK13802 bifunctional indole-3 96.3 0.094 2E-06 58.9 15.1 119 270-436 134-252 (695)
241 PRK06015 keto-hydroxyglutarate 96.2 0.27 5.9E-06 47.0 16.2 125 252-438 14-139 (201)
242 PRK13397 3-deoxy-7-phosphohept 96.2 0.14 3E-06 50.6 14.5 121 266-426 95-222 (250)
243 PF02581 TMP-TENI: Thiamine mo 96.2 0.021 4.6E-07 53.3 8.5 73 335-426 108-180 (180)
244 PRK05718 keto-hydroxyglutarate 96.2 0.03 6.5E-07 54.0 9.5 68 327-421 25-92 (212)
245 COG0352 ThiE Thiamine monophos 96.1 0.098 2.1E-06 50.4 12.6 93 316-433 103-195 (211)
246 cd00405 PRAI Phosphoribosylant 96.1 0.17 3.7E-06 48.0 14.2 48 380-433 142-190 (203)
247 COG0329 DapA Dihydrodipicolina 96.1 0.073 1.6E-06 54.0 12.0 89 326-432 22-114 (299)
248 PTZ00314 inosine-5'-monophosph 96.1 0.041 9E-07 59.6 10.8 69 331-423 242-310 (495)
249 COG0106 HisA Phosphoribosylfor 96.0 0.042 9.2E-07 53.7 9.6 90 330-441 32-121 (241)
250 TIGR01740 pyrF orotidine 5'-ph 96.0 0.58 1.3E-05 44.9 17.4 122 257-432 66-204 (213)
251 PRK00230 orotidine 5'-phosphat 96.0 0.21 4.5E-06 48.7 14.3 67 332-432 138-215 (230)
252 PRK12457 2-dehydro-3-deoxyphos 95.9 0.35 7.6E-06 48.3 15.5 122 263-424 100-238 (281)
253 PRK07565 dihydroorotate dehydr 95.9 0.13 2.9E-06 52.8 13.2 97 315-426 101-200 (334)
254 PRK08673 3-deoxy-7-phosphohept 95.9 0.41 9E-06 49.3 16.6 120 266-424 173-298 (335)
255 PRK12595 bifunctional 3-deoxy- 95.9 2.8 6.1E-05 43.7 23.8 121 266-426 198-325 (360)
256 TIGR02313 HpaI-NOT-DapA 2,4-di 95.8 0.12 2.6E-06 52.2 12.3 89 326-432 18-110 (294)
257 PRK06806 fructose-bisphosphate 95.8 0.12 2.6E-06 52.0 12.1 80 330-428 154-235 (281)
258 PLN02417 dihydrodipicolinate s 95.8 0.11 2.3E-06 52.1 11.8 89 326-432 19-111 (280)
259 cd00951 KDGDH 5-dehydro-4-deox 95.7 0.13 2.7E-06 51.8 12.1 85 326-428 18-106 (289)
260 PRK03620 5-dehydro-4-deoxygluc 95.7 0.11 2.4E-06 52.6 11.8 85 326-428 25-113 (303)
261 TIGR00078 nadC nicotinate-nucl 95.7 0.14 3.1E-06 51.0 12.2 64 335-428 191-254 (265)
262 TIGR01362 KDO8P_synth 3-deoxy- 95.7 0.4 8.7E-06 47.4 15.0 120 263-424 86-222 (258)
263 COG2876 AroA 3-deoxy-D-arabino 95.7 0.052 1.1E-06 53.6 8.8 119 266-423 125-249 (286)
264 TIGR01361 DAHP_synth_Bsub phos 95.7 0.28 6.1E-06 48.7 14.3 95 314-426 131-232 (260)
265 cd00952 CHBPH_aldolase Trans-o 95.7 0.12 2.7E-06 52.5 11.9 86 326-428 26-115 (309)
266 PRK09140 2-dehydro-3-deoxy-6-p 95.7 0.068 1.5E-06 51.3 9.4 80 317-423 11-90 (206)
267 TIGR01859 fruc_bis_ald_ fructo 95.7 0.77 1.7E-05 46.2 17.3 79 330-428 154-235 (282)
268 TIGR00683 nanA N-acetylneurami 95.7 0.13 2.8E-06 51.8 11.9 89 326-432 18-111 (290)
269 PRK07428 nicotinate-nucleotide 95.6 0.082 1.8E-06 53.3 10.2 71 330-427 205-275 (288)
270 PF01081 Aldolase: KDPG and KH 95.6 0.25 5.4E-06 47.1 12.8 123 258-439 21-144 (196)
271 TIGR01302 IMP_dehydrog inosine 95.6 0.065 1.4E-06 57.4 9.9 70 330-423 224-293 (450)
272 PRK04147 N-acetylneuraminate l 95.6 0.17 3.6E-06 51.0 12.2 89 326-432 21-114 (293)
273 PRK12290 thiE thiamine-phospha 95.6 0.15 3.1E-06 54.2 12.0 108 318-448 301-415 (437)
274 cd00945 Aldolase_Class_I Class 95.5 0.15 3.3E-06 47.1 11.1 72 326-428 10-90 (201)
275 PRK08999 hypothetical protein; 95.5 0.062 1.3E-06 54.3 8.9 84 319-426 228-311 (312)
276 PRK12858 tagatose 1,6-diphosph 95.5 0.4 8.8E-06 49.5 14.7 169 263-456 115-310 (340)
277 cd00377 ICL_PEPM Members of th 95.4 0.35 7.7E-06 47.5 13.7 127 294-440 54-194 (243)
278 PLN03033 2-dehydro-3-deoxyphos 95.4 0.34 7.4E-06 48.5 13.4 120 263-424 100-241 (290)
279 TIGR03569 NeuB_NnaB N-acetylne 95.4 2.8 6E-05 43.2 20.4 93 314-426 132-226 (329)
280 cd03329 MR_like_4 Mandelate ra 95.3 0.44 9.5E-06 49.5 14.7 126 258-426 146-274 (368)
281 cd01573 modD_like ModD; Quinol 95.3 0.17 3.7E-06 50.7 11.1 70 331-428 193-262 (272)
282 PRK05198 2-dehydro-3-deoxyphos 95.3 0.71 1.5E-05 45.8 15.0 120 263-424 94-230 (264)
283 PRK03512 thiamine-phosphate py 95.3 0.29 6.3E-06 47.1 12.3 96 319-437 104-199 (211)
284 PF03932 CutC: CutC family; I 95.3 0.31 6.8E-06 46.6 12.2 131 251-422 66-198 (201)
285 PRK05718 keto-hydroxyglutarate 95.2 0.4 8.7E-06 46.3 13.0 122 258-438 28-150 (212)
286 COG0646 MetH Methionine syntha 95.2 0.58 1.3E-05 47.1 14.2 166 253-443 52-244 (311)
287 cd00408 DHDPS-like Dihydrodipi 95.2 0.93 2E-05 45.0 16.0 84 258-353 19-103 (281)
288 PRK07315 fructose-bisphosphate 95.1 1.4 3.1E-05 44.6 17.2 81 330-428 155-237 (293)
289 PRK08072 nicotinate-nucleotide 95.1 0.26 5.6E-06 49.5 11.8 63 335-426 201-263 (277)
290 PRK05742 nicotinate-nucleotide 95.1 0.11 2.4E-06 52.2 9.0 63 335-426 202-264 (277)
291 TIGR01303 IMP_DH_rel_1 IMP deh 95.1 0.087 1.9E-06 56.8 8.8 70 329-422 224-293 (475)
292 PRK07107 inosine 5-monophospha 95.1 0.11 2.4E-06 56.5 9.6 70 330-422 242-311 (502)
293 PRK12581 oxaloacetate decarbox 95.0 5.6 0.00012 42.9 22.2 220 151-451 40-264 (468)
294 TIGR00343 pyridoxal 5'-phospha 95.0 0.43 9.3E-06 47.8 12.7 73 315-421 67-139 (287)
295 COG0269 SgbH 3-hexulose-6-phos 95.0 2.3 5.1E-05 41.0 17.2 133 269-445 80-212 (217)
296 cd00408 DHDPS-like Dihydrodipi 95.0 0.29 6.3E-06 48.7 11.8 87 326-429 15-105 (281)
297 PRK05096 guanosine 5'-monophos 94.9 0.28 6.2E-06 50.3 11.4 76 323-423 102-179 (346)
298 PRK12331 oxaloacetate decarbox 94.9 5.8 0.00012 42.6 21.9 152 254-451 96-255 (448)
299 cd02930 DCR_FMN 2,4-dienoyl-Co 94.9 0.32 6.9E-06 50.4 12.2 98 326-426 127-247 (353)
300 PLN02460 indole-3-glycerol-pho 94.9 0.2 4.4E-06 51.5 10.4 55 379-434 267-327 (338)
301 cd02922 FCB2_FMN Flavocytochro 94.9 0.43 9.2E-06 49.4 12.9 107 315-424 117-242 (344)
302 PRK13957 indole-3-glycerol-pho 94.9 0.23 5E-06 49.0 10.4 74 330-427 62-135 (247)
303 PRK06801 hypothetical protein; 94.8 0.28 6E-06 49.5 11.1 80 330-428 157-238 (286)
304 cd00950 DHDPS Dihydrodipicolin 94.8 0.34 7.3E-06 48.4 11.7 86 326-428 18-107 (284)
305 TIGR00734 hisAF_rel hisA/hisF 94.8 0.16 3.5E-06 49.2 9.0 84 330-438 37-122 (221)
306 cd04725 OMP_decarboxylase_like 94.7 0.7 1.5E-05 44.5 13.4 123 256-432 65-208 (216)
307 TIGR03249 KdgD 5-dehydro-4-deo 94.7 0.41 9E-06 48.3 12.1 85 326-428 23-111 (296)
308 KOG3111 D-ribulose-5-phosphate 94.6 1.6 3.4E-05 41.5 14.5 193 138-427 9-201 (224)
309 cd01572 QPRTase Quinolinate ph 94.6 0.14 3.1E-06 51.1 8.4 63 335-426 195-257 (268)
310 cd00954 NAL N-Acetylneuraminic 94.6 0.48 1E-05 47.5 12.3 86 326-428 18-108 (288)
311 PF09370 TIM-br_sig_trns: TIM- 94.5 0.22 4.7E-06 49.5 9.3 159 241-430 17-184 (268)
312 TIGR00674 dapA dihydrodipicoli 94.5 0.5 1.1E-05 47.3 12.2 86 326-428 16-105 (285)
313 PRK13306 ulaD 3-keto-L-gulonat 94.5 1.2 2.6E-05 43.0 14.3 134 269-447 80-213 (216)
314 PLN02535 glycolate oxidase 94.5 0.59 1.3E-05 48.8 12.9 106 315-423 123-251 (364)
315 cd02809 alpha_hydroxyacid_oxid 94.5 0.54 1.2E-05 47.5 12.5 85 316-423 116-200 (299)
316 PRK05567 inosine 5'-monophosph 94.5 0.14 3.1E-06 55.3 8.8 69 331-423 229-297 (486)
317 COG2513 PrpB PEP phosphonomuta 94.5 0.2 4.4E-06 50.2 9.0 153 261-442 32-202 (289)
318 TIGR02708 L_lactate_ox L-lacta 94.5 0.52 1.1E-05 49.2 12.5 106 316-424 133-257 (367)
319 TIGR02319 CPEP_Pphonmut carbox 94.5 6.3 0.00014 40.0 22.3 86 328-445 164-252 (294)
320 PRK09282 pyruvate carboxylase 94.4 7.9 0.00017 43.1 22.3 104 323-451 148-255 (592)
321 KOG4175 Tryptophan synthase al 94.3 0.92 2E-05 43.3 12.5 162 258-427 33-239 (268)
322 TIGR01306 GMP_reduct_2 guanosi 94.3 0.48 1E-05 48.6 11.5 81 318-423 83-165 (321)
323 TIGR01305 GMP_reduct_1 guanosi 94.3 0.53 1.1E-05 48.4 11.7 76 323-423 101-178 (343)
324 PRK07455 keto-hydroxyglutarate 94.2 1 2.2E-05 42.5 12.9 124 258-441 25-150 (187)
325 cd04729 NanE N-acetylmannosami 94.2 1.5 3.3E-05 42.0 14.4 86 315-423 60-150 (219)
326 TIGR00677 fadh2_euk methylenet 94.2 3.4 7.3E-05 41.6 17.2 159 254-442 13-184 (281)
327 PRK07807 inosine 5-monophospha 94.2 0.18 4E-06 54.4 8.6 70 329-422 226-295 (479)
328 PLN02979 glycolate oxidase 94.2 0.73 1.6E-05 48.0 12.6 107 316-425 121-253 (366)
329 PF01729 QRPTase_C: Quinolinat 94.1 0.37 8.1E-06 44.8 9.5 78 316-426 81-158 (169)
330 COG0329 DapA Dihydrodipicolina 94.1 0.88 1.9E-05 46.2 13.0 87 258-356 26-113 (299)
331 PRK08385 nicotinate-nucleotide 94.0 0.47 1E-05 47.7 10.7 94 296-426 168-262 (278)
332 cd04726 KGPDC_HPS 3-Keto-L-gul 94.0 2.8 6.1E-05 39.2 15.6 122 252-425 11-135 (202)
333 PRK08227 autoinducer 2 aldolas 94.0 3.2 6.9E-05 41.5 16.4 138 270-458 108-257 (264)
334 cd03332 LMO_FMN L-Lactate 2-mo 94.0 0.92 2E-05 47.7 13.1 107 315-424 137-282 (383)
335 PRK11320 prpB 2-methylisocitra 93.9 8.1 0.00018 39.2 23.6 150 241-428 80-239 (292)
336 PRK12330 oxaloacetate decarbox 93.9 11 0.00025 40.9 22.1 157 254-451 97-258 (499)
337 PF00701 DHDPS: Dihydrodipicol 93.9 0.51 1.1E-05 47.3 10.8 99 326-443 19-121 (289)
338 TIGR01769 GGGP geranylgeranylg 93.9 0.31 6.8E-06 46.8 8.8 100 319-449 2-102 (205)
339 TIGR02320 PEP_mutase phosphoen 93.9 2 4.4E-05 43.3 15.0 132 294-441 63-205 (285)
340 PRK06852 aldolase; Validated 93.8 4.8 0.0001 41.0 17.5 149 270-457 135-297 (304)
341 cd00950 DHDPS Dihydrodipicolin 93.8 2.5 5.5E-05 42.1 15.6 84 258-353 22-106 (284)
342 TIGR02313 HpaI-NOT-DapA 2,4-di 93.8 5.3 0.00012 40.3 18.0 86 258-355 22-108 (294)
343 PRK06843 inosine 5-monophospha 93.8 0.24 5.2E-06 52.3 8.4 70 330-423 153-222 (404)
344 TIGR00676 fadh2 5,10-methylene 93.8 7 0.00015 39.0 18.6 155 254-441 12-179 (272)
345 PLN02898 HMP-P kinase/thiamin- 93.7 0.59 1.3E-05 50.7 11.7 46 380-428 432-480 (502)
346 PF13714 PEP_mutase: Phosphoen 93.7 5.9 0.00013 38.9 17.6 148 241-428 71-224 (238)
347 PRK03620 5-dehydro-4-deoxygluc 93.7 1.4 3.1E-05 44.6 13.7 85 258-355 29-114 (303)
348 TIGR02317 prpB methylisocitrat 93.7 8.8 0.00019 38.8 22.9 208 137-428 13-234 (285)
349 cd00953 KDG_aldolase KDG (2-ke 93.7 0.9 2E-05 45.5 12.0 85 325-429 16-104 (279)
350 PRK08195 4-hyroxy-2-oxovalerat 93.7 9.9 0.00021 39.2 22.7 144 269-451 101-247 (337)
351 PRK11572 copper homeostasis pr 93.6 2.3 5.1E-05 42.0 14.4 131 251-423 67-198 (248)
352 TIGR01163 rpe ribulose-phospha 93.6 1.9 4.1E-05 40.5 13.6 119 258-424 12-134 (210)
353 PRK03170 dihydrodipicolinate s 93.5 0.89 1.9E-05 45.6 11.8 86 326-428 19-108 (292)
354 cd01568 QPRTase_NadC Quinolina 93.5 0.89 1.9E-05 45.4 11.6 33 394-428 227-259 (269)
355 PRK06559 nicotinate-nucleotide 93.4 0.53 1.1E-05 47.6 9.7 93 294-426 180-272 (290)
356 cd08205 RuBisCO_IV_RLP Ribulos 93.3 1.6 3.5E-05 45.6 13.6 102 241-354 131-235 (367)
357 cd00452 KDPG_aldolase KDPG and 93.3 0.53 1.1E-05 44.3 9.2 107 317-457 5-111 (190)
358 PRK01130 N-acetylmannosamine-6 93.3 2.5 5.5E-05 40.5 14.1 96 296-423 46-146 (221)
359 cd00951 KDGDH 5-dehydro-4-deox 93.3 1.9 4.1E-05 43.3 13.7 85 258-355 22-107 (289)
360 TIGR02319 CPEP_Pphonmut carbox 93.3 1.7 3.7E-05 44.0 13.3 127 294-441 62-200 (294)
361 TIGR03326 rubisco_III ribulose 93.2 4 8.7E-05 43.3 16.4 121 188-349 119-244 (412)
362 PRK06106 nicotinate-nucleotide 93.2 0.54 1.2E-05 47.3 9.4 91 296-426 179-269 (281)
363 PLN02493 probable peroxisomal 93.2 1.3 2.8E-05 46.2 12.5 107 316-425 122-254 (367)
364 PLN02591 tryptophan synthase 93.1 0.99 2.1E-05 44.7 11.1 48 291-352 174-221 (250)
365 PF00701 DHDPS: Dihydrodipicol 93.1 1.9 4.2E-05 43.1 13.5 86 258-355 23-109 (289)
366 PRK06543 nicotinate-nucleotide 93.1 0.59 1.3E-05 47.0 9.6 90 296-425 178-267 (281)
367 PRK00278 trpC indole-3-glycero 93.1 1.3 2.8E-05 44.0 11.9 89 315-427 49-144 (260)
368 TIGR03128 RuMP_HxlA 3-hexulose 92.9 2.4 5.2E-05 40.0 13.1 118 258-426 13-136 (206)
369 PRK09517 multifunctional thiam 92.8 1.2 2.5E-05 51.0 12.7 48 380-428 151-199 (755)
370 TIGR02321 Pphn_pyruv_hyd phosp 92.8 12 0.00026 37.9 22.9 165 241-445 77-254 (290)
371 TIGR03249 KdgD 5-dehydro-4-deo 92.8 4.5 9.7E-05 40.8 15.6 85 258-355 27-112 (296)
372 TIGR00674 dapA dihydrodipicoli 92.7 4.9 0.00011 40.2 15.7 86 258-355 20-106 (285)
373 cd08209 RLP_DK-MTP-1-P-enolase 92.7 5.7 0.00012 41.9 16.6 121 188-349 99-224 (391)
374 PRK04208 rbcL ribulose bisopho 92.7 4.7 0.0001 43.5 16.2 172 188-426 135-325 (468)
375 cd00952 CHBPH_aldolase Trans-o 92.7 2.7 5.9E-05 42.7 13.9 84 258-353 30-114 (309)
376 cd04727 pdxS PdxS is a subunit 92.6 0.24 5.3E-06 49.5 6.0 106 333-457 19-126 (283)
377 cd04737 LOX_like_FMN L-Lactate 92.5 2.1 4.5E-05 44.5 12.9 105 315-422 124-248 (351)
378 PRK06256 biotin synthase; Vali 92.5 3.3 7.2E-05 42.3 14.4 180 242-451 143-323 (336)
379 cd00954 NAL N-Acetylneuraminic 92.4 6.5 0.00014 39.4 16.2 85 258-354 22-108 (288)
380 cd04722 TIM_phosphate_binding 92.3 3.5 7.6E-05 37.3 13.1 91 315-427 57-147 (200)
381 PF04309 G3P_antiterm: Glycero 92.3 0.18 3.8E-06 47.3 4.3 81 315-425 91-171 (175)
382 PLN02495 oxidoreductase, actin 92.2 2.4 5.2E-05 44.6 13.1 117 294-426 97-217 (385)
383 PRK05458 guanosine 5'-monophos 92.0 1 2.2E-05 46.3 9.9 82 317-423 85-168 (326)
384 cd04736 MDH_FMN Mandelate dehy 92.0 2.6 5.7E-05 43.9 13.0 42 379-423 223-264 (361)
385 cd03328 MR_like_3 Mandelate ra 92.0 7 0.00015 40.4 16.2 126 258-426 141-268 (352)
386 PRK08185 hypothetical protein; 91.9 8.6 0.00019 38.8 16.2 81 330-428 150-233 (283)
387 PF00793 DAHP_synth_1: DAHP sy 91.9 2 4.3E-05 43.0 11.6 96 314-426 130-237 (270)
388 cd04734 OYE_like_3_FMN Old yel 91.9 2.4 5.2E-05 43.8 12.5 97 326-425 131-251 (343)
389 PRK07896 nicotinate-nucleotide 91.8 1.3 2.9E-05 44.7 10.3 93 296-426 185-277 (289)
390 PRK14725 pyruvate kinase; Prov 91.8 5.9 0.00013 43.9 15.8 156 251-452 430-600 (608)
391 cd08207 RLP_NonPhot Ribulose b 91.7 4.3 9.4E-05 43.0 14.4 95 241-349 144-243 (406)
392 PRK14041 oxaloacetate decarbox 91.7 22 0.00048 38.4 21.3 106 323-452 147-255 (467)
393 TIGR03586 PseI pseudaminic aci 91.7 5.1 0.00011 41.2 14.6 113 314-446 133-255 (327)
394 PLN02716 nicotinate-nucleotide 91.7 1.5 3.2E-05 44.7 10.4 66 341-426 228-293 (308)
395 PF01702 TGT: Queuine tRNA-rib 91.6 3.6 7.9E-05 40.1 12.9 91 315-426 54-144 (238)
396 cd03174 DRE_TIM_metallolyase D 91.6 14 0.0003 35.9 20.8 160 259-451 79-248 (265)
397 PRK07709 fructose-bisphosphate 91.6 7.4 0.00016 39.3 15.3 81 330-428 157-238 (285)
398 cd00377 ICL_PEPM Members of th 91.6 15 0.00032 36.1 20.1 135 258-427 85-230 (243)
399 PF00682 HMGL-like: HMGL-like 91.5 14 0.0003 35.6 19.3 80 326-426 134-216 (237)
400 cd08210 RLP_RrRLP Ribulose bis 91.5 7.7 0.00017 40.6 15.8 124 188-350 101-226 (364)
401 PRK11320 prpB 2-methylisocitra 91.4 5.2 0.00011 40.6 14.1 155 262-441 32-201 (292)
402 TIGR02317 prpB methylisocitrat 91.4 5.2 0.00011 40.4 14.0 128 293-441 57-196 (285)
403 CHL00200 trpA tryptophan synth 91.4 6.1 0.00013 39.4 14.3 67 271-352 168-234 (263)
404 PLN02274 inosine-5'-monophosph 91.4 0.76 1.7E-05 50.0 8.6 70 330-423 248-317 (505)
405 cd04823 ALAD_PBGS_aspartate_ri 91.3 4.1 8.9E-05 41.5 13.0 120 316-453 28-184 (320)
406 PRK09016 quinolinate phosphori 91.3 2.1 4.5E-05 43.4 11.0 62 335-425 221-282 (296)
407 COG1954 GlpP Glycerol-3-phosph 91.3 1 2.2E-05 41.9 7.9 77 315-421 95-171 (181)
408 PRK05437 isopentenyl pyrophosp 91.3 2.4 5.3E-05 44.0 11.9 113 289-424 103-218 (352)
409 cd04740 DHOD_1B_like Dihydroor 91.3 3.5 7.7E-05 41.3 12.8 94 315-423 89-186 (296)
410 PRK13111 trpA tryptophan synth 91.2 14 0.0003 36.7 16.7 87 258-349 27-124 (258)
411 cd07940 DRE_TIM_IPMS 2-isoprop 91.2 7.3 0.00016 38.6 14.8 78 326-423 140-221 (268)
412 TIGR00683 nanA N-acetylneurami 91.1 7.6 0.00017 39.1 15.0 85 258-354 22-108 (290)
413 PRK03170 dihydrodipicolinate s 91.1 7.9 0.00017 38.8 15.1 84 258-353 23-107 (292)
414 cd02810 DHOD_DHPD_FMN Dihydroo 91.1 5.3 0.00011 39.8 13.8 95 315-424 98-197 (289)
415 cd03321 mandelate_racemase Man 91.1 4.5 9.8E-05 41.8 13.7 98 295-427 173-271 (355)
416 PRK11197 lldD L-lactate dehydr 90.9 3.1 6.8E-05 43.7 12.3 43 379-424 232-274 (381)
417 COG4948 L-alanine-DL-glutamate 90.9 5.2 0.00011 41.5 14.0 136 258-438 146-283 (372)
418 PRK14042 pyruvate carboxylase 90.8 18 0.00039 40.3 18.6 166 243-451 84-255 (596)
419 TIGR01334 modD putative molybd 90.8 1.8 3.8E-05 43.6 9.9 65 335-425 201-265 (277)
420 PRK06978 nicotinate-nucleotide 90.8 2.5 5.5E-05 42.8 11.0 63 335-426 218-280 (294)
421 KOG4201 Anthranilate synthase 90.8 1.8 3.8E-05 41.8 9.3 50 380-429 223-272 (289)
422 cd04739 DHOD_like Dihydroorota 90.7 5.3 0.00012 40.9 13.7 97 315-426 99-198 (325)
423 cd01571 NAPRTase_B Nicotinate 90.7 4 8.6E-05 41.5 12.5 35 393-428 244-278 (302)
424 cd00564 TMP_TenI Thiamine mono 90.7 5.2 0.00011 36.7 12.5 111 258-425 13-124 (196)
425 cd02931 ER_like_FMN Enoate red 90.6 2.2 4.7E-05 44.8 10.9 99 326-426 140-275 (382)
426 PRK07998 gatY putative fructos 90.6 9.8 0.00021 38.4 15.0 79 330-427 154-233 (283)
427 PRK00043 thiE thiamine-phospha 90.4 3.9 8.5E-05 38.5 11.6 110 258-424 22-132 (212)
428 PRK13397 3-deoxy-7-phosphohept 90.4 0.74 1.6E-05 45.5 6.7 115 326-459 26-141 (250)
429 COG1646 Predicted phosphate-bi 90.2 1 2.2E-05 43.9 7.3 104 315-449 15-119 (240)
430 COG0134 TrpC Indole-3-glycerol 90.2 1.8 3.9E-05 42.9 9.2 108 315-452 45-159 (254)
431 PRK00311 panB 3-methyl-2-oxobu 90.2 18 0.0004 36.1 16.4 43 329-401 161-203 (264)
432 PRK15452 putative protease; Pr 90.2 9 0.00019 41.1 15.2 117 269-426 23-144 (443)
433 PF04481 DUF561: Protein of un 90.0 1.6 3.4E-05 42.2 8.3 75 325-432 23-99 (242)
434 PF02679 ComA: (2R)-phospho-3- 89.8 4.9 0.00011 39.7 11.8 129 251-425 22-169 (244)
435 TIGR02151 IPP_isom_2 isopenten 89.7 3.8 8.3E-05 42.2 11.7 114 288-424 95-211 (333)
436 PLN02623 pyruvate kinase 89.7 10 0.00023 41.9 15.4 150 250-443 275-442 (581)
437 PRK07259 dihydroorotate dehydr 89.6 5.2 0.00011 40.2 12.4 94 315-422 91-188 (301)
438 cd08213 RuBisCO_large_III Ribu 89.6 15 0.00033 39.0 16.1 161 241-442 132-313 (412)
439 PRK08610 fructose-bisphosphate 89.6 2.9 6.3E-05 42.2 10.3 80 330-427 157-237 (286)
440 PRK02261 methylaspartate mutas 89.5 3.9 8.5E-05 36.6 10.2 87 331-445 43-134 (137)
441 PRK06096 molybdenum transport 89.4 4.2 9E-05 41.1 11.3 64 335-424 202-265 (284)
442 cd03326 MR_like_1 Mandelate ra 89.4 11 0.00025 39.5 15.0 125 258-426 163-293 (385)
443 TIGR01108 oadA oxaloacetate de 89.2 41 0.0009 37.4 22.4 82 323-426 143-227 (582)
444 TIGR00222 panB 3-methyl-2-oxob 89.2 21 0.00046 35.6 15.9 42 330-401 161-202 (263)
445 TIGR00167 cbbA ketose-bisphosp 89.1 3 6.6E-05 42.1 10.1 81 330-427 159-240 (288)
446 PRK14017 galactonate dehydrata 89.1 19 0.00041 37.6 16.5 145 241-426 115-261 (382)
447 cd03327 MR_like_2 Mandelate ra 89.0 11 0.00023 38.8 14.4 130 258-426 123-255 (341)
448 PRK04147 N-acetylneuraminate l 89.0 20 0.00042 36.0 16.0 87 257-355 24-112 (293)
449 PRK00112 tgt queuine tRNA-ribo 88.9 18 0.00039 37.8 16.0 144 251-423 124-268 (366)
450 TIGR03849 arch_ComA phosphosul 88.9 5.4 0.00012 39.2 11.3 83 251-356 9-98 (237)
451 cd03325 D-galactonate_dehydrat 88.7 20 0.00043 37.0 16.2 122 268-425 137-259 (352)
452 cd04730 NPD_like 2-Nitropropan 88.6 7.5 0.00016 37.3 12.3 93 291-424 38-130 (236)
453 PLN02540 methylenetetrahydrofo 88.5 27 0.00059 38.7 17.6 160 252-441 10-191 (565)
454 PF00218 IGPS: Indole-3-glycer 88.5 4.3 9.4E-05 40.3 10.6 74 330-427 69-142 (254)
455 TIGR00449 tgt_general tRNA-gua 88.5 13 0.00028 38.9 14.6 142 252-424 121-264 (367)
456 cd00956 Transaldolase_FSA Tran 88.4 14 0.00031 35.5 13.9 124 294-457 39-172 (211)
457 PRK15072 bifunctional D-altron 88.3 11 0.00025 39.7 14.3 97 295-426 193-290 (404)
458 cd06557 KPHMT-like Ketopantoat 88.3 27 0.00059 34.7 16.0 44 329-402 158-201 (254)
459 PRK09485 mmuM homocysteine met 88.3 31 0.00068 34.9 18.2 144 252-442 134-303 (304)
460 cd08205 RuBisCO_IV_RLP Ribulos 88.3 4.9 0.00011 42.0 11.4 109 316-440 130-245 (367)
461 KOG2550 IMP dehydrogenase/GMP 88.2 1.7 3.7E-05 45.6 7.7 69 332-424 253-321 (503)
462 PRK09195 gatY tagatose-bisphos 88.1 4 8.6E-05 41.2 10.2 81 330-428 156-237 (284)
463 TIGR00640 acid_CoA_mut_C methy 88.1 2.5 5.3E-05 37.7 7.8 68 331-420 42-109 (132)
464 KOG0399 Glutamate synthase [Am 88.1 2.9 6.3E-05 49.2 9.9 156 287-460 1078-1270(2142)
465 cd04747 OYE_like_5_FMN Old yel 88.1 2.7 5.9E-05 43.8 9.3 100 326-426 134-258 (361)
466 PRK09549 mtnW 2,3-diketo-5-met 88.1 31 0.00066 36.7 17.1 95 241-349 135-234 (407)
467 CHL00040 rbcL ribulose-1,5-bis 88.0 26 0.00056 38.0 16.7 146 241-426 168-332 (475)
468 TIGR01858 tag_bisphos_ald clas 88.0 4.3 9.2E-05 41.0 10.3 81 330-428 154-235 (282)
469 TIGR01768 GGGP-family geranylg 87.9 2.3 5.1E-05 41.4 8.1 100 319-449 3-104 (223)
470 TIGR02321 Pphn_pyruv_hyd phosp 87.8 13 0.00027 37.8 13.5 129 294-442 60-203 (290)
471 PRK13384 delta-aminolevulinic 87.8 9.8 0.00021 38.8 12.5 119 316-453 35-189 (322)
472 COG0284 PyrF Orotidine-5'-phos 87.7 22 0.00047 35.0 14.8 65 330-429 144-220 (240)
473 COG2185 Sbm Methylmalonyl-CoA 87.5 5.4 0.00012 36.1 9.6 58 380-446 80-138 (143)
474 PLN02417 dihydrodipicolinate s 87.5 26 0.00056 35.0 15.7 86 258-355 23-109 (280)
475 COG0800 Eda 2-keto-3-deoxy-6-p 87.4 12 0.00026 36.1 12.5 124 252-437 23-147 (211)
476 PRK10550 tRNA-dihydrouridine s 87.4 16 0.00034 37.4 14.2 78 259-353 150-228 (312)
477 cd08208 RLP_Photo Ribulose bis 87.1 14 0.00031 39.4 14.0 121 188-349 135-260 (424)
478 PLN02389 biotin synthase 87.1 27 0.00058 36.7 16.0 158 269-451 188-353 (379)
479 PRK05265 pyridoxine 5'-phospha 87.0 32 0.00069 33.9 15.2 135 258-429 25-160 (239)
480 cd02811 IDI-2_FMN Isopentenyl- 86.9 8 0.00017 39.7 11.9 97 314-424 111-210 (326)
481 cd04733 OYE_like_2_FMN Old yel 86.9 3.2 6.9E-05 42.7 9.0 93 332-426 152-259 (338)
482 PRK09283 delta-aminolevulinic 86.9 13 0.00028 38.0 12.9 118 316-453 33-187 (323)
483 PF03740 PdxJ: Pyridoxal phosp 86.7 34 0.00074 33.7 17.0 146 258-440 23-169 (239)
484 PLN02746 hydroxymethylglutaryl 86.5 25 0.00053 36.6 15.2 210 150-452 72-306 (347)
485 PRK12737 gatY tagatose-bisphos 86.5 6.3 0.00014 39.8 10.5 80 330-427 156-236 (284)
486 PRK15440 L-rhamnonate dehydrat 86.4 7.4 0.00016 41.1 11.5 119 269-426 172-294 (394)
487 cd00947 TBP_aldolase_IIB Tagat 86.4 6 0.00013 39.8 10.3 81 330-428 149-231 (276)
488 COG1902 NemA NADH:flavin oxido 86.3 11 0.00024 39.4 12.5 102 326-428 139-263 (363)
489 COG1830 FbaB DhnA-type fructos 86.2 31 0.00068 34.4 14.9 128 270-443 111-255 (265)
490 cd06556 ICL_KPHMT Members of t 86.2 36 0.00078 33.5 16.9 165 138-402 13-199 (240)
491 PRK07094 biotin synthase; Prov 86.1 11 0.00024 38.2 12.4 144 258-422 130-279 (323)
492 cd06556 ICL_KPHMT Members of t 85.8 8.5 0.00018 37.9 10.9 140 261-441 26-190 (240)
493 TIGR00433 bioB biotin syntheta 85.7 37 0.0008 33.7 15.7 155 258-434 124-284 (296)
494 PRK06512 thiamine-phosphate py 85.6 8.3 0.00018 37.4 10.6 87 292-425 54-140 (221)
495 cd03322 rpsA The starvation se 85.6 7.9 0.00017 40.1 11.2 97 295-426 150-247 (361)
496 TIGR03217 4OH_2_O_val_ald 4-hy 85.5 12 0.00027 38.5 12.4 109 325-451 20-129 (333)
497 PF02219 MTHFR: Methylenetetra 85.4 40 0.00087 33.8 15.8 170 241-443 12-196 (287)
498 TIGR00430 Q_tRNA_tgt tRNA-guan 85.4 38 0.00083 35.4 16.1 143 251-423 120-264 (368)
499 PLN02460 indole-3-glycerol-pho 85.4 3.2 7E-05 42.8 7.9 74 330-427 140-214 (338)
500 PRK09250 fructose-bisphosphate 85.2 41 0.00088 35.0 15.7 139 270-428 160-323 (348)
No 1
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.4e-95 Score=702.58 Aligned_cols=362 Identities=60% Similarity=0.939 Sum_probs=333.1
Q ss_pred cccchhhchhhhhhhhhcCCChHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEcCeeeCCcEEeCCCCCCCHHHHHHHHc
Q 012517 78 TFCGWLFSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAAGFDKNAEAVEGLLG 157 (462)
Q Consensus 78 ~~~~~~~~~~~~~~p~l~~~d~E~aH~~~~~~l~~~~~p~~~~~~~~~L~v~v~Gl~f~NPiglAAG~dk~~e~~~~l~~ 157 (462)
.+..|.|..+.+++|+..++|||.+|++++.+.++|++|+++..|+..|.+++||.+|+||||+||||||++++++.|++
T Consensus 36 ~~~~~~f~~~~~mp~~~~lld~E~sHrlAv~aas~gl~Pr~~~~d~~~L~~k~~g~~f~NPiglAAGfdk~~eaidgL~~ 115 (398)
T KOG1436|consen 36 MSGVELFYARIVMPPFHALLDPEFSHRLAVLAASWGLLPRDRVADDASLETKVLGRKFSNPIGLAAGFDKNAEAIDGLAN 115 (398)
T ss_pred hcCceeeeeeeecchhhhhCCHHHHHHHHHHHHHhCCCchhccCCccchhhHHhhhhccCchhhhhccCcchHHHHHHHh
Confidence 33446554455656666699999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHH-hhccCcccccccCCCCCCCcccCCCC
Q 012517 158 LGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGA-QHGKRKLDETSRTSSSPNDEVKAGGK 236 (462)
Q Consensus 158 lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (462)
+||||+|+|||||.||+|||+||+||+++|.++||||||||+|++++.+|++. +..+ .|.
T Consensus 116 ~gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r~~~----------------~~e--- 176 (398)
T KOG1436|consen 116 SGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKRQAK----------------YPE--- 176 (398)
T ss_pred CCCceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHHHHHHHHHhc----------------CCC---
Confidence 99999999999999999999999999999999999999999999999999987 2221 111
Q ss_pred CCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCC
Q 012517 237 AGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPP 316 (462)
Q Consensus 237 ~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~ 316 (462)
....+|||+++||+|.+++.||++.++.+.++|||++||+|||||||+|++|....|++++..|..+++++++ +.++
T Consensus 177 -~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtpGlr~lq~k~~L~~ll~~v~~a~~~~~~--~~~~ 253 (398)
T KOG1436|consen 177 -APAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTPGLRSLQKKSDLRKLLTKVVQARDKLPL--GKKP 253 (398)
T ss_pred -ccccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCcchhhhhhHHHHHHHHHHHHHHHhcccc--CCCC
Confidence 1225999999999999999999999999999999999999999999999999999999999999999988754 4466
Q ss_pred CEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCcc
Q 012517 317 PLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIP 396 (462)
Q Consensus 317 Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ip 396 (462)
|+++||+||+..+++.+|+.++++.++||+|++|||.+|+..........++||+||+|++++++++|+.+|+++.++||
T Consensus 254 pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~Ip 333 (398)
T KOG1436|consen 254 PVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIP 333 (398)
T ss_pred ceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999975544445667999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCCCHHHhhcccC
Q 012517 397 LIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVGADY 461 (462)
Q Consensus 397 IIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~si~e~~G~~~ 461 (462)
|||||||.|++||+|+|+|||++||+||+|.|+||.++.+|++||.++|+++||.+|+|++|++|
T Consensus 334 iIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kIk~El~~ll~~kG~t~v~d~iG~~~ 398 (398)
T KOG1436|consen 334 IIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKIKRELSALLKAKGFTSVDDAIGKDH 398 (398)
T ss_pred eEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCCCcHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN02826 dihydroorotate dehydrogenase
Probab=100.00 E-value=3.2e-91 Score=723.07 Aligned_cols=406 Identities=84% Similarity=1.292 Sum_probs=347.0
Q ss_pred chhhhhhhHHHhhheeeeeeecccccchhhchhhhhhhhhcCCChHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEcCee
Q 012517 55 LTGATTLGLVIATGAYVSTVDEATFCGWLFSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRK 134 (462)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~d~E~aH~~~~~~l~~~~~p~~~~~~~~~L~v~v~Gl~ 134 (462)
+++. .+++++++++|+.........-|+.+++.+++|+||++|||+||++++.+|+.++.|+....++++|+++++|++
T Consensus 4 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dpE~aH~~~~~~l~~~~~~~~~~~~~~~L~~~~~Gl~ 82 (409)
T PLN02826 4 LTGA-LIGLAIAGGAYVSTVDEATFCGWLFNATKLVNPLFRLLDPETAHSLAISAAARGLVPREKRPDPSVLGVEVWGRT 82 (409)
T ss_pred cccc-eeeEEeecceeEeechhhhcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccCCCCCcceEECCEE
Confidence 3344 468888888888777555555675445778899999999999999999999987777544567889999999999
Q ss_pred eCCcEEeCCCCCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhcc
Q 012517 135 FSNPLGLAAGFDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGK 214 (462)
Q Consensus 135 f~NPiglAAG~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~ 214 (462)
|+||||+|||||||++.++.++++||||||+|||||+||+|||+||+||+++|.++||||||||+|++.+.++|++...+
T Consensus 83 f~NPvglAAG~dkn~~~~~~l~~lGfG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~~~~l~~~~~~ 162 (409)
T PLN02826 83 FSNPIGLAAGFDKNAEAVEGLLGLGFGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVAKRLGAQHGK 162 (409)
T ss_pred CCCCCEECcccCCCHHHHHHHHhcCCCeEEeCCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875421
Q ss_pred CcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHH
Q 012517 215 RKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQL 294 (462)
Q Consensus 215 ~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l 294 (462)
.............+...+. ....+.++||||++||.+++.++||+++++++.+++||||||+|||||+|+|.+|+++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~-~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l 241 (409)
T PLN02826 163 RKLDETSSSSFSSDDVKAG-GKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQL 241 (409)
T ss_pred ccccccccccccccccccc-ccccCceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHH
Confidence 1100000000000110000 011234899999999977667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCC
Q 012517 295 KDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGK 374 (462)
Q Consensus 295 ~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~ 374 (462)
.+|+++|+++++++.+....++||+|||+||++++++.++++.+++.|+|||+++||+.+|++++...+...+.||+||+
T Consensus 242 ~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~ 321 (409)
T PLN02826 242 KDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGK 321 (409)
T ss_pred HHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCc
Confidence 99999999887644322224689999999999999999999999999999999999999887644333344578999999
Q ss_pred cCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCCCHH
Q 012517 375 PLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSII 454 (462)
Q Consensus 375 ~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~si~ 454 (462)
|+++.++++|+++++.+++++||||+|||.|++||+|+|++||++||+||+++|+||.++.+|+++|.++|+++||+|++
T Consensus 322 pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~~~l~~~G~~si~ 401 (409)
T PLN02826 322 PLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAELAACLERDGFKSIQ 401 (409)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCC
Q 012517 455 EAVGADYR 462 (462)
Q Consensus 455 e~~G~~~~ 462 (462)
|++|.+||
T Consensus 402 e~iG~~~~ 409 (409)
T PLN02826 402 EAVGADHR 409 (409)
T ss_pred HHhCcCCC
Confidence 99999986
No 3
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.4e-77 Score=592.87 Aligned_cols=302 Identities=46% Similarity=0.708 Sum_probs=278.1
Q ss_pred CccEEEcCeeeCCcEEeCCCCC-CCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHH
Q 012517 125 ILGLEVWGRKFSNPLGLAAGFD-KNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203 (462)
Q Consensus 125 ~L~v~v~Gl~f~NPiglAAG~d-k~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~ 203 (462)
+|+++++|++|+||+|+|||+| |+++.++.+.++||||||+||+|++||+|||+||+||+++|+++||+|||||+|+++
T Consensus 1 ~l~~~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~ 80 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAAGFDGKNGEELDALAALGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADA 80 (310)
T ss_pred CCceeecceecCCCCeEcccCCccCHHHHHHHHhcCCceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHH
Confidence 4788999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCC--HHHHHHHHHHHHHHcccCcEEEEeccCCC
Q 012517 204 VAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTS--EDAAADYVQGVHTLSQYADYLVINVSSPN 281 (462)
Q Consensus 204 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t--~~~~~dy~~~~~~l~~~aD~leiNvSsPn 281 (462)
+.++++....+. .++++||++|+.+ +++++||+.+++++.+ +||+|+|+||||
T Consensus 81 ~~~~l~~~~~~~------------------------~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~-ad~ielNiScPn 135 (310)
T COG0167 81 FLEELKLAKYEG------------------------KPIGVNIGKNKGGPSEEAWADYARLLEEAGD-ADAIELNISCPN 135 (310)
T ss_pred HHHHHHhhhhcc------------------------CCcCcceEEecCCCcHHHHHHHHHHHHhcCC-CCEEEEEccCCC
Confidence 999988654321 1467777777766 6889999999999999 999999999999
Q ss_pred CCCccccc-CchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCC-
Q 012517 282 TPGLRMLQ-GRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPV- 359 (462)
Q Consensus 282 t~glr~lq-~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~- 359 (462)
|+|+|.+| +++.+.+++++|++.+ ++||+|||+|+ .+++.++|+++.++|+|||+++||+.+++...
T Consensus 136 t~g~~~l~~~~e~l~~l~~~vk~~~---------~~Pv~vKl~P~--~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~ 204 (310)
T COG0167 136 TPGGRALGQDPELLEKLLEAVKAAT---------KVPVFVKLAPN--ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDL 204 (310)
T ss_pred CCChhhhccCHHHHHHHHHHHHhcc---------cCceEEEeCCC--HHHHHHHHHHHHHcCCcEEEEEeeccccccccc
Confidence 99999998 8899999999999874 69999999994 45999999999999999999999998776322
Q ss_pred --CCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHH
Q 012517 360 --SKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 437 (462)
Q Consensus 360 --~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i 437 (462)
..+....+.|||||+|++|+++++|+++|+.+++++||||+|||.|++||+|+|++||++||+||+++|+||.++++|
T Consensus 205 ~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I 284 (310)
T COG0167 205 ETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEI 284 (310)
T ss_pred cccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHH
Confidence 134566789999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHhhcccCC
Q 012517 438 KAELAECLERDGFKSIIEAVGADYR 462 (462)
Q Consensus 438 ~~~L~~~l~~~G~~si~e~~G~~~~ 462 (462)
.++|.++|+++||+|++|++|.+++
T Consensus 285 ~~~l~~~l~~~g~~si~d~iG~~~~ 309 (310)
T COG0167 285 IKGLARWLEEKGFESIQDIIGSALR 309 (310)
T ss_pred HHHHHHHHHHcCCCCHHHHhchhcc
Confidence 9999999999999999999999875
No 4
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=100.00 E-value=4.7e-71 Score=562.11 Aligned_cols=325 Identities=50% Similarity=0.808 Sum_probs=286.1
Q ss_pred hhhhhhhcCCChHHHHHHHHHHHhcC-CCCC-----C-CCCCCCCccEEEcCeeeCCcEEeCCCCCCCHHHHHHHHcCCc
Q 012517 88 KLVNPFFALLDAEVAHTLAVSAAARG-WVPR-----E-KRPDPAILGLEVWGRKFSNPLGLAAGFDKNAEAVEGLLGLGF 160 (462)
Q Consensus 88 ~~~~p~l~~~d~E~aH~~~~~~l~~~-~~p~-----~-~~~~~~~L~v~v~Gl~f~NPiglAAG~dk~~e~~~~l~~lGf 160 (462)
++++|+||++|||.||++++.+||.. ..|. . +..+++ |+++++|++|+||||+|||+|++++.++.++++||
T Consensus 2 ~~~~~~l~~~~~e~ah~~~~~~l~~~~~~~~~~~~~~~~~~~~~-L~~~~~Gl~l~NPi~lAsG~~~~~~~~~~~~~~G~ 80 (335)
T TIGR01036 2 PLVRKLLFLLDPESAHELTFQFLRLGTGTPFLALLRSLFGASDP-LEVTVLGLKFPNPLGLAAGFDKDGEAIDALGAMGF 80 (335)
T ss_pred chhhhhhhcCCHHHHHHHHHHHHHhcccCCchhhhhhhccCCCC-CcEEECCEECCCCcEeCCccCCCHHHHHHHHhcCC
Confidence 46899999999999999999999952 2221 1 123445 99999999999999999999999999999999999
Q ss_pred cEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCc
Q 012517 161 GFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPG 240 (462)
Q Consensus 161 G~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 240 (462)
||||+||||++||+|||+||+||++++.+++|++||+|+|++++.+++++... ..
T Consensus 81 Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~-------------------------~~ 135 (335)
T TIGR01036 81 GFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARY-------------------------KG 135 (335)
T ss_pred CEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccC-------------------------CC
Confidence 99999999999999999999999999999999999999999999999876211 13
Q ss_pred eEEEEecCCCC--CHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCE
Q 012517 241 ILGVNIGKNKT--SEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPL 318 (462)
Q Consensus 241 ~lgvnig~nk~--t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv 318 (462)
+++|||++|+. +++.++||+++++++.+++||||+|+||||++|++.+|+++.+.+++++|+++++.+. ...++||
T Consensus 136 ~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~--~~~~~Pv 213 (335)
T TIGR01036 136 PIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLR--RVHRVPV 213 (335)
T ss_pred cEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhh--hccCCce
Confidence 79999999864 3346889999999999999999999999999999999999999999999999875331 1124899
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE
Q 012517 319 LVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 319 ~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII 398 (462)
+|||+|+++++++.+++++++++|+|||+++||+.++.. +..+......||+||+++++.++++++++++.+++++|||
T Consensus 214 ~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~-~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipii 292 (335)
T TIGR01036 214 LVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSL-VQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPII 292 (335)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCcccc-ccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 999999999889999999999999999999999987642 2222222468999999999999999999999998789999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
|+|||.|++||+++|++|||+||+||+++++||+++.+|+++|
T Consensus 293 g~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~~~L 335 (335)
T TIGR01036 293 GVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIVKEI 335 (335)
T ss_pred EECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHHhhC
Confidence 9999999999999999999999999999999999999999875
No 5
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=6.4e-69 Score=549.04 Aligned_cols=333 Identities=51% Similarity=0.825 Sum_probs=296.6
Q ss_pred hhhhhhhhcCCChHHHHHHHHHHHhc-CCCCC------CCCCCCCCccEEEcCeeeCCcEEeCCCCCCCHHHHHHHHcCC
Q 012517 87 TKLVNPFFALLDAEVAHTLAVSAAAR-GWVPR------EKRPDPAILGLEVWGRKFSNPLGLAAGFDKNAEAVEGLLGLG 159 (462)
Q Consensus 87 ~~~~~p~l~~~d~E~aH~~~~~~l~~-~~~p~------~~~~~~~~L~v~v~Gl~f~NPiglAAG~dk~~e~~~~l~~lG 159 (462)
+.+++|+||++|||.||++++.+||. +.+|. ....++++|+++++|++|+||||+|||+|++++.++.+.++|
T Consensus 3 ~~~~~~~l~~~~~e~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~~~G 82 (344)
T PRK05286 3 YPLARPLLFKLDPETAHELTIRALKRASRTPLLSLLRQRLTYTDPRLPVTVMGLTFPNPVGLAAGFDKNGEAIDALGALG 82 (344)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCchhhhhhccCCCCCCCceEECCEECCCCCEECCCCCCChHHHHHHHHcC
Confidence 56789999999999999999999995 32221 124578899999999999999999999999999999999999
Q ss_pred ccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCC
Q 012517 160 FGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGP 239 (462)
Q Consensus 160 fG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 239 (462)
|||||+||||++||.|||+||+++++++.+++|++||+|+|++++.+++++.. . .
T Consensus 83 ~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~--~-----------------------~ 137 (344)
T PRK05286 83 FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAY--R-----------------------G 137 (344)
T ss_pred CCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhc--C-----------------------C
Confidence 99999999999999999999999999889999999999999999999988642 1 1
Q ss_pred ceEEEEecCCCCC--HHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCC
Q 012517 240 GILGVNIGKNKTS--EDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPP 317 (462)
Q Consensus 240 ~~lgvnig~nk~t--~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~P 317 (462)
.|+++||++|+.+ ++.++||+++++++.+++|+||+|+||||++|.+.+++++.+.+++++|+++++.. . .++|
T Consensus 138 ~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~---~-~~~P 213 (344)
T PRK05286 138 IPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAEL---H-GYVP 213 (344)
T ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhcc---c-cCCc
Confidence 2799999987555 34688999999999999999999999999999899999999999999999986311 0 1489
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccE
Q 012517 318 LLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPL 397 (462)
Q Consensus 318 v~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipI 397 (462)
|+|||+|+.+.+++.++++.++++|+|||+++||+.++.+ +.........||+||+++++.++++++++++.+++++||
T Consensus 214 V~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~-~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipI 292 (344)
T PRK05286 214 LLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDG-LKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPI 292 (344)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccccc-ccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999999999889999999999999999999999976542 222233346899999999999999999999999778999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcC
Q 012517 398 IGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDG 449 (462)
Q Consensus 398 Ig~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G 449 (462)
|++|||.|++||.++|++|||+||++|+++++||+++++|+++|.+||+++|
T Consensus 293 ig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 293 IGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRRDG 344 (344)
T ss_pred EEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987
No 6
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=100.00 E-value=4.5e-64 Score=510.31 Aligned_cols=322 Identities=61% Similarity=0.943 Sum_probs=285.1
Q ss_pred hhhhcCCChHHHHHHHHHHHhc-CCCCCC--CCCCCCCccEEEcCeeeCCcEEeCCCCCCCHHHHHHHHcCCccEEEecc
Q 012517 91 NPFFALLDAEVAHTLAVSAAAR-GWVPRE--KRPDPAILGLEVWGRKFSNPLGLAAGFDKNAEAVEGLLGLGFGFVEVGS 167 (462)
Q Consensus 91 ~p~l~~~d~E~aH~~~~~~l~~-~~~p~~--~~~~~~~L~v~v~Gl~f~NPiglAAG~dk~~e~~~~l~~lGfG~Vevgt 167 (462)
+|+||++|||+||++++.+|+. ...|.. +..++++|+++++|++|+||||+|||++++++.++.+++.||||||+||
T Consensus 1 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~~~G~Gavv~kt 80 (327)
T cd04738 1 RPLLFLLDPETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAAGFDKNAEAIDALLALGFGFVEVGT 80 (327)
T ss_pred CCceecCCHHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCcCCCCCHHHHHHHHHCCCcEEEEec
Confidence 5889999999999999999996 333322 4567889999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEec
Q 012517 168 VTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIG 247 (462)
Q Consensus 168 vT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig 247 (462)
+|++||.|||+||+++++++.+++|++||+|+|++.+.+++++... ...|+++||+
T Consensus 81 it~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~------------------------~~~plivsi~ 136 (327)
T cd04738 81 VTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRP------------------------RGGPLGVNIG 136 (327)
T ss_pred cCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhcc------------------------CCCeEEEEEe
Confidence 9999999999999999998889999999999999999999976421 0237999998
Q ss_pred CCCCC--HHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC
Q 012517 248 KNKTS--EDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD 325 (462)
Q Consensus 248 ~nk~t--~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd 325 (462)
+|..+ ++.++||+++++++.+++|+||+|+||||++|.+.+++++.+.+++++|+++.+++ +.++||+|||+|+
T Consensus 137 g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~----~~~~Pv~vKl~~~ 212 (327)
T cd04738 137 KNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKL----GKKVPLLVKIAPD 212 (327)
T ss_pred CCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhc----ccCCCeEEEeCCC
Confidence 87533 35588999999999999999999999999999888999999999999999886322 2358999999999
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+++.++++.++++|+|+|+++||+.++.. ...+......||+||+++++.+++.++++++.+++++|||++|||.|
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~-~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t 291 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPG-LLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISS 291 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCcccccc-cccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 98889999999999999999999999876542 21223344678999999999999999999999977799999999999
Q ss_pred HHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 406 GEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 406 ~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
++||.++|++|||+||++|+++++||+++.+|+++|
T Consensus 292 ~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~~l 327 (327)
T cd04738 292 GEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKREL 327 (327)
T ss_pred HHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHhcC
Confidence 999999999999999999999999999999999875
No 7
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=100.00 E-value=2.9e-62 Score=493.36 Aligned_cols=297 Identities=24% Similarity=0.308 Sum_probs=255.5
Q ss_pred CccEEEcCeeeCCcEEeCCCCC-CCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHH
Q 012517 125 ILGLEVWGRKFSNPLGLAAGFD-KNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203 (462)
Q Consensus 125 ~L~v~v~Gl~f~NPiglAAG~d-k~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~ 203 (462)
+|+++++|++|+|||++|||++ ++++.++.+++.||||||+||+|++||+|||+||+|+++ .+++|++||+|+|+++
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~--~~~~N~~Gl~n~g~~~ 78 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYCMTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTP--LGSINSMGLPNLGFDY 78 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECc--chhhccCCCCCcCHHH
Confidence 5899999999999999999997 899999999999999999999999999999999999975 6899999999999999
Q ss_pred HHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcc--cCcEEEEeccCCC
Q 012517 204 VAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQ--YADYLVINVSSPN 281 (462)
Q Consensus 204 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~--~aD~leiNvSsPn 281 (462)
+.+++++..... .+.++++||.+ .+.+ ||.+.++.+.+ ++|+||+|+||||
T Consensus 79 ~~~~i~~~~~~~----------------------~~~pvI~Si~G--~~~~---~~~~~a~~~~~~g~ad~iElN~ScPn 131 (310)
T PRK02506 79 YLDYVLELQKKG----------------------PNKPHFLSVVG--LSPE---ETHTILKKIQASDFNGLVELNLSCPN 131 (310)
T ss_pred HHHHHHHHHhhc----------------------CCCCEEEEEEe--CcHH---HHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 999998643210 01368889854 3566 55566666654 4999999999999
Q ss_pred CCCccccc-CchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCcc-C-CCC
Q 012517 282 TPGLRMLQ-GRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS-R-PDP 358 (462)
Q Consensus 282 t~glr~lq-~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~-r-~~~ 358 (462)
+++.+.++ +++.+.+++++|++++ ++||+|||+|+++..++.+.++.+.+.|+++|+.+||... . .|.
T Consensus 132 ~~~~~~~g~d~~~~~~i~~~v~~~~---------~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~ 202 (310)
T PRK02506 132 VPGKPQIAYDFETTEQILEEVFTYF---------TKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDP 202 (310)
T ss_pred CCCccccccCHHHHHHHHHHHHHhc---------CCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEec
Confidence 99887775 4688999999998864 6899999999997777777777777889999999998431 1 011
Q ss_pred -CCCCCc--ccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHH
Q 012517 359 -VSKNPV--AKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIP 435 (462)
Q Consensus 359 -~~~~~~--~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~ 435 (462)
...+.. ....||+||++++|.++++|+++++.+++++||||+|||+|++||+|+|++|||+||+||+++++||.++.
T Consensus 203 ~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~ 282 (310)
T PRK02506 203 EDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFE 282 (310)
T ss_pred CCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHH
Confidence 111111 34689999999999999999999999977899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHhhcc
Q 012517 436 QIKAELAECLERDGFKSIIEAVGA 459 (462)
Q Consensus 436 ~i~~~L~~~l~~~G~~si~e~~G~ 459 (462)
+|+++|.+||+++||+|++|++|.
T Consensus 283 ~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 283 RLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred HHHHHHHHHHHHhCCCCHHHHhCh
Confidence 999999999999999999999995
No 8
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=100.00 E-value=2.7e-59 Score=468.87 Aligned_cols=291 Identities=36% Similarity=0.544 Sum_probs=236.3
Q ss_pred CccEEEcCeeeCCcEEeCCCCCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHH
Q 012517 125 ILGLEVWGRKFSNPLGLAAGFDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAV 204 (462)
Q Consensus 125 ~L~v~v~Gl~f~NPiglAAG~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~ 204 (462)
.|+++++|++|+|||++|||++++++.+++++++|||||++||+|++|++|||+||+++++++.+++|++||+|.|++.+
T Consensus 1 ~L~~~~~Gl~l~nPi~~asG~~~~~~~~~~~~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~ 80 (295)
T PF01180_consen 1 MLSTNFCGLTLKNPIGLASGLDKNGEEIKRLFDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYY 80 (295)
T ss_dssp GG-EEETTEEESSSEEE-TTSSTSSHHHHHHHHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHH
T ss_pred CccEEECCEEcCCCcEECCcCCCCchhhhhhhcCCccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCC
Q 012517 205 AKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPG 284 (462)
Q Consensus 205 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~g 284 (462)
.+++++..++.... .+.++++|+.+. +++.++||.++++++.+++|+||+|+||||+++
T Consensus 81 ~~~~~~~~~~~~~~-------------------~~~pvi~Si~~~--~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~ 139 (295)
T PF01180_consen 81 LERLRPILKEAKKD-------------------VDIPVIASINGD--SEEEIEDWAELAKRLEAGADALELNLSCPNVPG 139 (295)
T ss_dssp HHHHHHTHHHTTCH--------------------CEEEEEEE-TS--SSGHHHHHHHHHHHHHHHCSEEEEESTSTTSTT
T ss_pred HHHHHHHhhhcccc-------------------cceeEEEEeecC--CchhHHHHHHHHHHhcCcCCceEEEeeccCCCC
Confidence 99998765432100 123677887653 566788999999999989999999999999998
Q ss_pred cccccC-chHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCC-CCCC-
Q 012517 285 LRMLQG-RKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPD-PVSK- 361 (462)
Q Consensus 285 lr~lq~-~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~-~~~~- 361 (462)
.+.+.+ ++...++++.+++.. ++||+|||+|++++.+...++..+.+.|+|||+++||+...+. +...
T Consensus 140 ~~~~~~~~~~~~~i~~~v~~~~---------~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~ 210 (295)
T PF01180_consen 140 GRPFGQDPELVAEIVRAVREAV---------DIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETR 210 (295)
T ss_dssp SGGGGGHHHHHHHHHHHHHHHH---------SSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTT
T ss_pred ccccccCHHHHHHHHHHHHhcc---------CCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhc
Confidence 777654 456667888777653 7999999999998777777888888999999999999876541 1211
Q ss_pred CC-cccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHH
Q 012517 362 NP-VAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 362 ~~-~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
.+ .....||+||++++|.++++|+++++.+++++||||+|||+|++||+++|++|||+||+||+++++||+++++|+++
T Consensus 211 ~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~ 290 (295)
T PF01180_consen 211 RPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRE 290 (295)
T ss_dssp EESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHH
T ss_pred ceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHH
Confidence 11 22367999999999999999999999997789999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 012517 441 LAECL 445 (462)
Q Consensus 441 L~~~l 445 (462)
|++||
T Consensus 291 L~~~l 295 (295)
T PF01180_consen 291 LEEWL 295 (295)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99998
No 9
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=100.00 E-value=6.5e-58 Score=464.62 Aligned_cols=294 Identities=21% Similarity=0.242 Sum_probs=255.5
Q ss_pred CccEEEcCeeeCCcEEeCC-CCCCCHHHHHHHHcCCccEEEecccccCC--CCCCCCCcee----eecCCCcccccCCCC
Q 012517 125 ILGLEVWGRKFSNPLGLAA-GFDKNAEAVEGLLGLGFGFVEVGSVTPVP--QEGNPKPRIF----RLRQEGAIINRCGFN 197 (462)
Q Consensus 125 ~L~v~v~Gl~f~NPiglAA-G~dk~~e~~~~l~~lGfG~VevgtvT~~p--q~GNp~PR~f----rl~~d~a~iN~~G~n 197 (462)
+|+|+++|++|+|||++|| +||++++.++.+.+.|||+||+||+|++| |+|||.||++ |+++..+++|++||+
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~~~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~ 80 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRY 80 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCCCCHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccccccccc
Confidence 5899999999999999986 58999999999999999999999999997 9999999975 668889999999999
Q ss_pred chhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEec
Q 012517 198 SEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINV 277 (462)
Q Consensus 198 n~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNv 277 (462)
|+|++++.+++++..++. +.|+++||.++ +++++.||++.++++. +|+||||+
T Consensus 81 n~g~~~~~~~i~~~~~~~-----------------------~~pvi~si~g~--~~~~~~~~a~~~~~~g--ad~iElN~ 133 (325)
T cd04739 81 NLGPEEYLELIRRAKRAV-----------------------SIPVIASLNGV--SAGGWVDYARQIEEAG--ADALELNI 133 (325)
T ss_pred CcCHHHHHHHHHHHHhcc-----------------------CCeEEEEeCCC--CHHHHHHHHHHHHhcC--CCEEEEeC
Confidence 999999999998653211 23799999653 7787888888887765 99999999
Q ss_pred cCCC-CCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCC
Q 012517 278 SSPN-TPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRP 356 (462)
Q Consensus 278 SsPn-t~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~ 356 (462)
|||| +++++..+..+.+.+++++|+++. ++||+||++|+++ ++.++++.++++|+|||+++||+....
T Consensus 134 s~~~~~~~~~g~~~~~~~~eiv~~v~~~~---------~iPv~vKl~p~~~--~~~~~a~~l~~~Gadgi~~~nt~~~~~ 202 (325)
T cd04739 134 YALPTDPDISGAEVEQRYLDILRAVKSAV---------TIPVAVKLSPFFS--ALAHMAKQLDAAGADGLVLFNRFYQPD 202 (325)
T ss_pred CCCCCCCCcccchHHHHHHHHHHHHHhcc---------CCCEEEEcCCCcc--CHHHHHHHHHHcCCCeEEEEcCcCCCC
Confidence 9955 566665555567888888888753 6899999999987 899999999999999999999986543
Q ss_pred CCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHH
Q 012517 357 DPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQ 436 (462)
Q Consensus 357 ~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~ 436 (462)
.+..... ....+|+||+++++.++++++++++.+ ++||||+|||.|++||.++|++|||+||+||+++++||.++.+
T Consensus 203 id~~~~~-~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~ 279 (325)
T cd04739 203 IDLETLE-VVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGT 279 (325)
T ss_pred ccccccc-eecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHH
Confidence 2221111 123578999999999999999999988 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHhhcc
Q 012517 437 IKAELAECLERDGFKSIIEAVGA 459 (462)
Q Consensus 437 i~~~L~~~l~~~G~~si~e~~G~ 459 (462)
|+++|.+||+++||+|++|++|.
T Consensus 280 i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 280 LLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred HHHHHHHHHHHcCCCCHHHHhcc
Confidence 99999999999999999999996
No 10
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=3.7e-58 Score=460.52 Aligned_cols=281 Identities=25% Similarity=0.307 Sum_probs=242.8
Q ss_pred EEEcCeeeCCcEEeCCCC-CCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHH
Q 012517 128 LEVWGRKFSNPLGLAAGF-DKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAK 206 (462)
Q Consensus 128 v~v~Gl~f~NPiglAAG~-dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~ 206 (462)
++++|++|+|||++|||+ |+++|.++.+++.||||||+||+|++||+|||+||+|++ +.+++|++||+|+|++++.+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~--~~~~~N~~G~~n~g~~~~~~ 78 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWCTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAF--PLGSINSLGLPNLGLDYYLE 78 (294)
T ss_pred CccCCeeCCCCCEECCCCCCCCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEec--CccccccccCCCcCHHHHHH
Confidence 468999999999999998 999999999999999999999999999999999999998 57899999999999999999
Q ss_pred HHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcc----cCcEEEEeccCCCC
Q 012517 207 RLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQ----YADYLVINVSSPNT 282 (462)
Q Consensus 207 ~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~----~aD~leiNvSsPnt 282 (462)
++++....+. . ...|+++||..+ ++ ||.++++++.+ ++|+||+|+||||+
T Consensus 79 ~i~~~~~~~~-~-------------------~~~pvivsi~g~---~~---~~~~~~~~~~~~~~~~ad~ielN~sCPn~ 132 (294)
T cd04741 79 YIRTISDGLP-G-------------------SAKPFFISVTGS---AE---DIAAMYKKIAAHQKQFPLAMELNLSCPNV 132 (294)
T ss_pred HHHHHhhhcc-c-------------------cCCeEEEECCCC---HH---HHHHHHHHHHhhccccccEEEEECCCCCC
Confidence 9987543110 0 123799999763 44 67777777765 58999999999999
Q ss_pred CCccccc-CchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHc--CCcEEEEecCCccCC--C
Q 012517 283 PGLRMLQ-GRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVAL--RLDGLIISNTTISRP--D 357 (462)
Q Consensus 283 ~glr~lq-~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~--GvdgIivsNTt~~r~--~ 357 (462)
+|.+.++ +++.+.+++++|++++ ++||+|||+|+.+.+++.++++.+.+. |+|||+++||+.... +
T Consensus 133 ~~~~~~~~~~~~~~~i~~~v~~~~---------~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id 203 (294)
T cd04741 133 PGKPPPAYDFDATLEYLTAVKAAY---------SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLD 203 (294)
T ss_pred CCcccccCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCcccccc
Confidence 8887665 6899999999998864 689999999999888899999999998 999999999984321 1
Q ss_pred CCCCCC-c--ccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChH
Q 012517 358 PVSKNP-V--AKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALI 434 (462)
Q Consensus 358 ~~~~~~-~--~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i 434 (462)
.....+ . ...+||+||+++++.++++|+++++.+++++||||+|||.|++||+|+|++|||+||+||+++++||+++
T Consensus 204 ~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~ 283 (294)
T cd04741 204 PERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVF 283 (294)
T ss_pred CCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHH
Confidence 101111 1 2468999999999999999999999997679999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHH
Q 012517 435 PQIKAELAECL 445 (462)
Q Consensus 435 ~~i~~~L~~~l 445 (462)
++|+++|++||
T Consensus 284 ~~i~~~L~~~~ 294 (294)
T cd04741 284 ARIEKELEDIW 294 (294)
T ss_pred HHHHHHHHhhC
Confidence 99999999885
No 11
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=100.00 E-value=1.2e-57 Score=458.26 Aligned_cols=294 Identities=32% Similarity=0.443 Sum_probs=262.2
Q ss_pred CccEEEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHH
Q 012517 125 ILGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203 (462)
Q Consensus 125 ~L~v~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~ 203 (462)
+|+++++|++|+|||++||| ++++.+.++.+++.|||+|++||+|++||.|||.||+++.+ .+++|++||+|+|++.
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~--~~~~n~~g~~~~g~~~ 78 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFGFGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNAIGLQNPGVDA 78 (301)
T ss_pred CCceEECCEECCCCcEECCcCCCCCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecC--CceeecCCCCCcCHHH
Confidence 58999999999999999999 79999999999999999999999999999999999999987 6899999999999999
Q ss_pred HHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHccc--CcEEEEeccCCC
Q 012517 204 VAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQY--ADYLVINVSSPN 281 (462)
Q Consensus 204 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~--aD~leiNvSsPn 281 (462)
+.+++.+..++. ..++++||+++ +++ ||.++++++.++ +|+||||+||||
T Consensus 79 ~~~~~~~~~~~~-----------------------~~p~i~si~g~--~~~---~~~~~a~~~~~aG~~D~iElN~~cP~ 130 (301)
T PRK07259 79 FIEEELPWLEEF-----------------------DTPIIANVAGS--TEE---EYAEVAEKLSKAPNVDAIELNISCPN 130 (301)
T ss_pred HHHHHHHHHhcc-----------------------CCcEEEEeccC--CHH---HHHHHHHHHhccCCcCEEEEECCCCC
Confidence 999988654321 23799999875 555 899999999886 999999999999
Q ss_pred CCC--cccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCC
Q 012517 282 TPG--LRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPV 359 (462)
Q Consensus 282 t~g--lr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~ 359 (462)
+++ ...+|+++++.+++++|+++. ++||+||++|+++ ++.++++.++++|+|+|+++||+.++....
T Consensus 131 ~~~gg~~~~~~~~~~~eiv~~vr~~~---------~~pv~vKl~~~~~--~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~ 199 (301)
T PRK07259 131 VKHGGMAFGTDPELAYEVVKAVKEVV---------KVPVIVKLTPNVT--DIVEIAKAAEEAGADGLSLINTLKGMAIDI 199 (301)
T ss_pred CCCCccccccCHHHHHHHHHHHHHhc---------CCCEEEEcCCCch--hHHHHHHHHHHcCCCEEEEEcccccccccc
Confidence 974 456788899999999999863 6899999999875 889999999999999999999987653111
Q ss_pred C--CCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHH
Q 012517 360 S--KNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 437 (462)
Q Consensus 360 ~--~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i 437 (462)
. .+......||+||+++++.++++++++++.+ ++|||++|||.|++||.++|++|||+||++|++++ ||++++++
T Consensus 200 ~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-~P~~~~~i 276 (301)
T PRK07259 200 KTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-DPYAFPKI 276 (301)
T ss_pred ccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-CcHHHHHH
Confidence 1 1112235789999999999999999999998 79999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHcCCCCHHHhhcccCC
Q 012517 438 KAELAECLERDGFKSIIEAVGADYR 462 (462)
Q Consensus 438 ~~~L~~~l~~~G~~si~e~~G~~~~ 462 (462)
++++.+||+++||++++|++|.+||
T Consensus 277 ~~~l~~~~~~~g~~~i~~~~g~~~~ 301 (301)
T PRK07259 277 IEGLEAYLDKYGIKSIEEIVGIAHK 301 (301)
T ss_pred HHHHHHHHHHcCCCCHHHHhCcccC
Confidence 9999999999999999999999987
No 12
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=100.00 E-value=9.9e-57 Score=461.66 Aligned_cols=302 Identities=25% Similarity=0.310 Sum_probs=256.8
Q ss_pred CCCCccEEEcCeeeCCcEEeCCCC-CCCHHHHHHHHcCCccEEEecccccCC-CCCCCCCceeeecCCCccc-----ccC
Q 012517 122 DPAILGLEVWGRKFSNPLGLAAGF-DKNAEAVEGLLGLGFGFVEVGSVTPVP-QEGNPKPRIFRLRQEGAII-----NRC 194 (462)
Q Consensus 122 ~~~~L~v~v~Gl~f~NPiglAAG~-dk~~e~~~~l~~lGfG~VevgtvT~~p-q~GNp~PR~frl~~d~a~i-----N~~ 194 (462)
..++|+++++|++|+|||++|||. ..+.+.++++++.|+|+|++||+|++| +.+|+.||+.+++ .+++ |++
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~--~g~~~~~~~n~i 84 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLR--AGANGSAKGRVI 84 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCccCCCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecC--cccccccccccc
Confidence 457899999999999999999995 777788899999999999999999987 8899999999874 5678 899
Q ss_pred CCCch------hHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcc
Q 012517 195 GFNSE------GIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQ 268 (462)
Q Consensus 195 G~nn~------G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~ 268 (462)
||+|+ |++.+.+.+++..+++ | ..|+++||.. ..++++|.+++ +++.+
T Consensus 85 Gl~N~~~~s~~g~~~~l~~i~~~k~~~----------------~------~~pvIaSi~~-~~s~~~~~~~a---~~~e~ 138 (385)
T PLN02495 85 GWQNIELISDRPFETMLAEFKQLKEEY----------------P------DRILIASIME-EYNKDAWEEII---ERVEE 138 (385)
T ss_pred cccCcccccccCHHHHHHHHHHHHhhC----------------C------CCcEEEEccC-CCCHHHHHHHH---HHHHh
Confidence 99999 6999998876543211 1 1379999943 23677455554 44544
Q ss_pred c-CcEEEEeccCCCCCCccc-----ccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcC
Q 012517 269 Y-ADYLVINVSSPNTPGLRM-----LQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 269 ~-aD~leiNvSsPnt~glr~-----lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~G 342 (462)
. +|+||+|+||||++++|. .|+++.+.+++++|++.. ++||+|||+|+++ ++.++++++++.|
T Consensus 139 ~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~---------~iPv~vKLsPn~t--~i~~ia~aa~~~G 207 (385)
T PLN02495 139 TGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA---------TVPVWAKMTPNIT--DITQPARVALKSG 207 (385)
T ss_pred cCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh---------cCceEEEeCCChh--hHHHHHHHHHHhC
Confidence 3 999999999999987776 388899999999998764 6899999999987 6999999999999
Q ss_pred CcEEEEecCCccCCCC--CC-CC-C-c--ccccCCCCCCcCccchHHHHHHHHHhcC----CCccEEEecCCCCHHHHHH
Q 012517 343 LDGLIISNTTISRPDP--VS-KN-P-V--AKETGGLSGKPLLSLSNNILKEMYLLTR----GKIPLIGCGGISSGEDAYR 411 (462)
Q Consensus 343 vdgIivsNTt~~r~~~--~~-~~-~-~--~~~~GGlSG~~l~~~al~~v~~i~~~~~----~~ipIIg~GGI~s~~dA~e 411 (462)
+|||+++||+.++.+. .. .+ + . ....|||||++++|++++.++++++.++ .++||||+|||.|++||+|
T Consensus 208 adgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e 287 (385)
T PLN02495 208 CEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAE 287 (385)
T ss_pred CCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHH
Confidence 9999999999865421 11 11 1 1 2468999999999999999999999874 2599999999999999999
Q ss_pred HHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCCCHHHhhcccCC
Q 012517 412 KIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVGADYR 462 (462)
Q Consensus 412 ~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~si~e~~G~~~~ 462 (462)
+|.+||++||+||+++++||.++++|+++|.+||+++||+|++|++|.+|.
T Consensus 288 ~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~~~G~~si~e~~G~~~~ 338 (385)
T PLN02495 288 FILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMKKHNFSSIEDFRGASLP 338 (385)
T ss_pred HHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHHHcCCCCHHHHhCcCCc
Confidence 999999999999999999999999999999999999999999999998763
No 13
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=5e-55 Score=437.95 Aligned_cols=290 Identities=31% Similarity=0.471 Sum_probs=255.7
Q ss_pred cEEEcCeeeCCcEEeCCCCCCCHHHHHHHHcCC-ccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHH
Q 012517 127 GLEVWGRKFSNPLGLAAGFDKNAEAVEGLLGLG-FGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVA 205 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAAG~dk~~e~~~~l~~lG-fG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~ 205 (462)
+++++|++|+|||++|||++++++.+..+++.| ||+|++||+|++||.|||+||+++.+ .+++|++||+|+|++.+.
T Consensus 1 ~~~~~G~~~~nP~~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~--~~~~n~~g~~~~g~~~~~ 78 (296)
T cd04740 1 SVELAGLRLKNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP--GGMLNAIGLQNPGVEAFL 78 (296)
T ss_pred CeEECCEEcCCCCEECCCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecC--cceeeecCCCCcCHHHHH
Confidence 478999999999999999999999999999998 99999999999999999999999987 789999999999999999
Q ss_pred HHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHccc-CcEEEEeccCCCCCC
Q 012517 206 KRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQY-ADYLVINVSSPNTPG 284 (462)
Q Consensus 206 ~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~g 284 (462)
+++++...+ ...++++||.++ +.+ ||.++++++.++ +|+||||++|||+++
T Consensus 79 ~~~~~~~~~-----------------------~~~p~ivsi~g~--~~~---~~~~~a~~~~~~G~d~iElN~~cP~~~~ 130 (296)
T cd04740 79 EELLPWLRE-----------------------FGTPVIASIAGS--TVE---EFVEVAEKLADAGADAIELNISCPNVKG 130 (296)
T ss_pred HHHHHHhhc-----------------------CCCcEEEEEecC--CHH---HHHHHHHHHHHcCCCEEEEECCCCCCCC
Confidence 999875431 023799999875 444 888888888886 999999999999985
Q ss_pred c--ccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCC-C-
Q 012517 285 L--RMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPV-S- 360 (462)
Q Consensus 285 l--r~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~-~- 360 (462)
. ...++++.+.+++++|++++ ++||+||++|+.+ ++.++++.++++|+|+|+++||+.++.... .
T Consensus 131 ~g~~~~~~~~~~~eiv~~vr~~~---------~~Pv~vKl~~~~~--~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~ 199 (296)
T cd04740 131 GGMAFGTDPEAVAEIVKAVKKAT---------DVPVIVKLTPNVT--DIVEIARAAEEAGADGLTLINTLKGMAIDIETR 199 (296)
T ss_pred CcccccCCHHHHHHHHHHHHhcc---------CCCEEEEeCCCch--hHHHHHHHHHHcCCCEEEEECCCcccccccccC
Confidence 3 23578899999999998763 6899999999875 788999999999999999999987653111 1
Q ss_pred CCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHH
Q 012517 361 KNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 361 ~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
.+......||+||+++++.++++++++++.+ ++|||++|||.+++||.++|++|||+||++|++++ ||+++++++++
T Consensus 200 ~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-~p~~~~~i~~~ 276 (296)
T cd04740 200 KPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-DPEAFKEIIEG 276 (296)
T ss_pred ceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-ChHHHHHHHHH
Confidence 1112335689999999999999999999998 79999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHcCCCCHHHhhccc
Q 012517 441 LAECLERDGFKSIIEAVGAD 460 (462)
Q Consensus 441 L~~~l~~~G~~si~e~~G~~ 460 (462)
|.+||+++||+|++|++|..
T Consensus 277 l~~~~~~~g~~~~~~~~g~~ 296 (296)
T cd04740 277 LEAYLDEEGIKSIEELVGLA 296 (296)
T ss_pred HHHHHHHcCCCCHHHHhCcC
Confidence 99999999999999999963
No 14
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=5.3e-54 Score=431.41 Aligned_cols=292 Identities=30% Similarity=0.449 Sum_probs=254.3
Q ss_pred ccEEEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHH
Q 012517 126 LGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAV 204 (462)
Q Consensus 126 L~v~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~ 204 (462)
|+++++|++|+|||++||| ++++.+.++.+.+.|||++++||+|++||+|||+||+++++ .+++|++||+|.|.+.+
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~--~~~~n~~gl~~~g~~~~ 78 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETP--CGMLNAIGLQNPGVEAF 78 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecc--cHHhhhccCCCcCHHHH
Confidence 6789999999999999999 69999999999999999999999999999999999999986 67999999999999999
Q ss_pred HHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHc---ccCcEEEEeccCCC
Q 012517 205 AKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLS---QYADYLVINVSSPN 281 (462)
Q Consensus 205 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~---~~aD~leiNvSsPn 281 (462)
.+++++...+. +.++++||..+ +++ +|.++++.+. .++|+||+|+||||
T Consensus 79 ~~~~~~~~~~~-----------------------~~pl~~qi~g~--~~~---~~~~~a~~~~~~~~~~d~ielN~~cP~ 130 (300)
T TIGR01037 79 LEELKPVREEF-----------------------PTPLIASVYGS--SVE---EFAEVAEKLEKAPPYVDAYELNLSCPH 130 (300)
T ss_pred HHHHHHHhccC-----------------------CCcEEEEeecC--CHH---HHHHHHHHHHhccCccCEEEEECCCCC
Confidence 99988653311 13799999764 566 6666677666 45999999999999
Q ss_pred CCCcc--cccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCC
Q 012517 282 TPGLR--MLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPV 359 (462)
Q Consensus 282 t~glr--~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~ 359 (462)
+++.. .+++++.+.+++++|+++. ++||+||++++.+ +..++++.++++|+|+|+++||+.++....
T Consensus 131 ~~~~g~~l~~~~~~~~eiv~~vr~~~---------~~pv~vKi~~~~~--~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~ 199 (300)
T TIGR01037 131 VKGGGIAIGQDPELSADVVKAVKDKT---------DVPVFAKLSPNVT--DITEIAKAAEEAGADGLTLINTLRGMKIDI 199 (300)
T ss_pred CCCCccccccCHHHHHHHHHHHHHhc---------CCCEEEECCCChh--hHHHHHHHHHHcCCCEEEEEccCCcccccc
Confidence 98632 3578899999999998763 6899999998765 788999999999999999999987643211
Q ss_pred C--CCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHH
Q 012517 360 S--KNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 437 (462)
Q Consensus 360 ~--~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i 437 (462)
. .+......||+||+++++.+++.++++++.+ ++|||++|||.|++||.++|++|||+||++|++++ +|++++++
T Consensus 200 ~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~-~p~~~~~i 276 (300)
T TIGR01037 200 KTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY-RGFAFKKI 276 (300)
T ss_pred ccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc-CchHHHHH
Confidence 1 1122345789999999999999999999998 69999999999999999999999999999999987 58999999
Q ss_pred HHHHHHHHHHcCCCCHHHhhcccC
Q 012517 438 KAELAECLERDGFKSIIEAVGADY 461 (462)
Q Consensus 438 ~~~L~~~l~~~G~~si~e~~G~~~ 461 (462)
+++|.++|+++||+|++|++|.+|
T Consensus 277 ~~~l~~~~~~~g~~~~~e~~g~~~ 300 (300)
T TIGR01037 277 IEGLIAFLKAEGFTSIEELIGIAH 300 (300)
T ss_pred HHHHHHHHHHcCCCCHHHHhCcCC
Confidence 999999999999999999999886
No 15
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=100.00 E-value=1.3e-53 Score=447.47 Aligned_cols=297 Identities=23% Similarity=0.249 Sum_probs=248.6
Q ss_pred CccEEEcCeeeCCcEEeCCCC-CCCHHHHHHHHcCCccEEEecccccCCCCCCCC-CceeeecCCCcccccCCCCchhH-
Q 012517 125 ILGLEVWGRKFSNPLGLAAGF-DKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPK-PRIFRLRQEGAIINRCGFNSEGI- 201 (462)
Q Consensus 125 ~L~v~v~Gl~f~NPiglAAG~-dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~-PR~frl~~d~a~iN~~G~nn~G~- 201 (462)
+|+++++|++|+||||+|||. ..+.+.+..++++|||+||+||+| ||.|||+ ||+|+++. +.+|.+||+|.|+
T Consensus 3 ~L~~~~~Gl~l~nPv~~aag~~~~~~~~~~~~~~~g~Gavv~kti~--~~~gn~~~pr~~~~~~--~~~~~~g~~n~~~~ 78 (420)
T PRK08318 3 DLSITFCGIKSPNPFWLASAPPTNKYYNVARAFEAGWGGVVWKTLG--PPIVNVSSPRFGALVK--EDRRFIGFNNIELI 78 (420)
T ss_pred CceEEECCEecCCCcEeCCcCCCCCHHHHHHHHHhCCCEEEEeecC--CCCCCCCCCeEEEecC--CCcccccccCcccc
Confidence 689999999999999999994 455577677778999999999999 8999999 99999953 3578999999965
Q ss_pred -----HHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEe
Q 012517 202 -----VAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVIN 276 (462)
Q Consensus 202 -----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiN 276 (462)
+.+.+.+++..... + ..++++||.++ .+++++.||++.++.+. +|+||+|
T Consensus 79 s~~~~~~~~~~~~~~~~~~----------------~------~~p~i~si~g~-~~~~~~~~~a~~~~~~g--~d~ielN 133 (420)
T PRK08318 79 TDRPLEVNLREIRRVKRDY----------------P------DRALIASIMVE-CNEEEWKEIAPLVEETG--ADGIELN 133 (420)
T ss_pred cccCHHHHHHHHHHHHhhC----------------C------CceEEEEeccC-CCHHHHHHHHHHHHhcC--CCEEEEe
Confidence 76666554432210 0 12678998653 15777788888877765 9999999
Q ss_pred ccCCCCCCccc-----ccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecC
Q 012517 277 VSSPNTPGLRM-----LQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNT 351 (462)
Q Consensus 277 vSsPnt~glr~-----lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNT 351 (462)
+||||+.+.+. +++++.+.+++++|++.. ++||+|||+|+++ ++.++++.++++|+|||+++||
T Consensus 134 ~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~---------~~Pv~vKl~p~~~--~~~~~a~~~~~~Gadgi~~~Nt 202 (420)
T PRK08318 134 FGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS---------RLPVIVKLTPNIT--DIREPARAAKRGGADAVSLINT 202 (420)
T ss_pred CCCCCCccccCCcccccCCHHHHHHHHHHHHhcc---------CCcEEEEcCCCcc--cHHHHHHHHHHCCCCEEEEecc
Confidence 99999754433 478899999999998763 6899999999987 6899999999999999999999
Q ss_pred CccCCCC-CC----CCCc--ccccCCCCCCcCccchHHHHHHHHHhcC-CCccEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 352 TISRPDP-VS----KNPV--AKETGGLSGKPLLSLSNNILKEMYLLTR-GKIPLIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 352 t~~r~~~-~~----~~~~--~~~~GGlSG~~l~~~al~~v~~i~~~~~-~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
+.++... +. .+.. ....|||||++++|.++++|+++++.++ +++||||+|||+|++||+++|++|||+||+|
T Consensus 203 ~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 203 INSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVC 282 (420)
T ss_pred cCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheee
Confidence 9886421 11 1111 3468999999999999999999999874 3799999999999999999999999999999
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHcCCCCHHHhhcccC
Q 012517 424 TAFAYGGPALIPQIKAELAECLERDGFKSIIEAVGADY 461 (462)
Q Consensus 424 Tali~~GP~~i~~i~~~L~~~l~~~G~~si~e~~G~~~ 461 (462)
|+++++||.++.+|+++|.+||+++||.+++|++|..+
T Consensus 283 ta~~~~gp~ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 283 TAAMQYGFRIVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred eeeccCCchhHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 99999999999999999999999999999999999754
No 16
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=100.00 E-value=4.2e-53 Score=425.02 Aligned_cols=278 Identities=25% Similarity=0.299 Sum_probs=235.8
Q ss_pred CccEEEcCeeeCCcEEeCCCC-CCCHHHHHHHHcCCccEEEecccccC-CCCCCCCCceeeecCCCcccccCCCCch---
Q 012517 125 ILGLEVWGRKFSNPLGLAAGF-DKNAEAVEGLLGLGFGFVEVGSVTPV-PQEGNPKPRIFRLRQEGAIINRCGFNSE--- 199 (462)
Q Consensus 125 ~L~v~v~Gl~f~NPiglAAG~-dk~~e~~~~l~~lGfG~VevgtvT~~-pq~GNp~PR~frl~~d~a~iN~~G~nn~--- 199 (462)
+|+++++|++|+|||++|||+ +++++.++.++++|||+||+||+|++ ||.|||+||+|+++++ ..|++||+|.
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~--~~n~~g~~n~e~~ 78 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTS--GRGQIGFNNIELI 78 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCCCCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCC--chhcccccCCccc
Confidence 589999999999999999994 99999999999999999999999999 9999999999999864 4599999994
Q ss_pred ---hHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEE
Q 012517 200 ---GIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVI 275 (462)
Q Consensus 200 ---G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~lei 275 (462)
|++.+.+++++..... ...++++|+..+ .+++ ||.++++++.+ .+|+||+
T Consensus 79 s~~~~~~~~~~~~~~~~~~----------------------~~~p~i~si~G~-~~~~---~~~~~a~~~~~~gad~iel 132 (299)
T cd02940 79 SEKPLEYWLKEIRELKKDF----------------------PDKILIASIMCE-YNKE---DWTELAKLVEEAGADALEL 132 (299)
T ss_pred cccCHHHHHHHHHHHHhhC----------------------CCCeEEEEecCC-CCHH---HHHHHHHHHHhcCCCEEEE
Confidence 4888888776543210 013677777442 1455 78888888876 5999999
Q ss_pred eccCCCCCCccc-----ccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEec
Q 012517 276 NVSSPNTPGLRM-----LQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISN 350 (462)
Q Consensus 276 NvSsPnt~glr~-----lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsN 350 (462)
|+||||+.+++. +++++.+.+++++|++.. ++||+|||+|+.+ ++.++++.++++|+|+|+++|
T Consensus 133 N~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---------~~Pv~vKl~~~~~--~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 133 NFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV---------KIPVIAKLTPNIT--DIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred ECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc---------CCCeEEECCCCch--hHHHHHHHHHHcCCCEEEEec
Confidence 999999965443 478899999999998763 6899999999876 789999999999999999999
Q ss_pred CCccCCCC--CCCCC-----cccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 351 TTISRPDP--VSKNP-----VAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 351 Tt~~r~~~--~~~~~-----~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
|+.++.+. ....+ .....||+||++++|.++++|+++++.+++++|||++|||+|++||+++|++|||+||+|
T Consensus 202 t~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 202 TVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVC 281 (299)
T ss_pred ccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEc
Confidence 99875321 11111 123579999999999999999999999976899999999999999999999999999999
Q ss_pred hhhhhcCCChHHHHHHHH
Q 012517 424 TAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 424 Tali~~GP~~i~~i~~~L 441 (462)
|+++++||+++.+|+++|
T Consensus 282 ta~~~~g~~~~~~i~~~l 299 (299)
T cd02940 282 TAVMNQGFTIVDDMCTGL 299 (299)
T ss_pred eeecccCCcHHHHHhhhC
Confidence 999999999999999875
No 17
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=1.1e-51 Score=420.87 Aligned_cols=294 Identities=21% Similarity=0.205 Sum_probs=244.3
Q ss_pred CccEEEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceee--------ecCCCcccccCC
Q 012517 125 ILGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFR--------LRQEGAIINRCG 195 (462)
Q Consensus 125 ~L~v~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~fr--------l~~d~a~iN~~G 195 (462)
+|+++++|++|+|||++||| ++++++.++++.+.|||+|++||+|.. |.+|++||+|| +++..++||++|
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~~~~~~~~~~~~g~Gavv~kti~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g 80 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSESVDNVKRLEDAGAGAVVLKSLFEE-QIRHEAAELDRHLTHGTESFAEALDYFPEPA 80 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCCCHHHHHHHHHCCCeEEEEeeCCHH-HhhccccccccccccCCCcchhhhhhhhhhh
Confidence 68999999999999999987 699999999999999999999999954 45787788776 466678999999
Q ss_pred CCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEE
Q 012517 196 FNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVI 275 (462)
Q Consensus 196 ~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~lei 275 (462)
|+|+|++.+.+.+++...+. +.|+++||+.. +.+++.++++.++.+. +|+||+
T Consensus 81 l~n~g~d~~~~~i~~~~~~~-----------------------~~pvi~sI~g~--~~~e~~~~a~~~~~ag--ad~iel 133 (334)
T PRK07565 81 KFYVGPEEYLELIRRAKEAV-----------------------DIPVIASLNGS--SAGGWVDYARQIEQAG--ADALEL 133 (334)
T ss_pred ccCcCHHHHHHHHHHHHHhc-----------------------CCcEEEEeccC--CHHHHHHHHHHHHHcC--CCEEEE
Confidence 99999999999887543211 23799999764 6675666666666554 999999
Q ss_pred eccCCCCC-CcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCcc
Q 012517 276 NVSSPNTP-GLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS 354 (462)
Q Consensus 276 NvSsPnt~-glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~ 354 (462)
|+|||+.. +.+..+..+.+.+++++|+++ .++||+||++|+++ ++.++++.++++|+|||+++||+..
T Consensus 134 N~scpp~~~~~~g~~~~~~~~eil~~v~~~---------~~iPV~vKl~p~~~--~~~~~a~~l~~~G~dgI~~~n~~~~ 202 (334)
T PRK07565 134 NIYYLPTDPDISGAEVEQRYLDILRAVKSA---------VSIPVAVKLSPYFS--NLANMAKRLDAAGADGLVLFNRFYQ 202 (334)
T ss_pred eCCCCCCCCCCccccHHHHHHHHHHHHHhc---------cCCcEEEEeCCCch--hHHHHHHHHHHcCCCeEEEECCcCC
Confidence 99997764 332222234567888888765 36899999999875 7889999999999999999999865
Q ss_pred CCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChH
Q 012517 355 RPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALI 434 (462)
Q Consensus 355 r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i 434 (462)
........ .....+|+||+++++.++++++++++.+ ++||||+|||.|++||.++|.+|||+||+||+++++||.++
T Consensus 203 ~~~d~~~~-~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~ 279 (334)
T PRK07565 203 PDIDLETL-EVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYI 279 (334)
T ss_pred CCcChhhc-ccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHH
Confidence 42111110 1113568999999999999999999998 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHhhccc
Q 012517 435 PQIKAELAECLERDGFKSIIEAVGAD 460 (462)
Q Consensus 435 ~~i~~~L~~~l~~~G~~si~e~~G~~ 460 (462)
.+|+++|++||+++||+|++|++|..
T Consensus 280 ~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 280 GTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 99999999999999999999999964
No 18
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=100.00 E-value=6.5e-50 Score=399.38 Aligned_cols=277 Identities=35% Similarity=0.488 Sum_probs=240.7
Q ss_pred EEEcCeeeCCcEEeCCCCC-CCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecC-------CCcccccCCCCch
Q 012517 128 LEVWGRKFSNPLGLAAGFD-KNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQ-------EGAIINRCGFNSE 199 (462)
Q Consensus 128 v~v~Gl~f~NPiglAAG~d-k~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~-------d~a~iN~~G~nn~ 199 (462)
|+++|++|+|||++|||++ ++++.++.+.+.|||+|++||+|++|++|||+||+++++. +.+++|++|++|.
T Consensus 1 ~~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~ 80 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNL 80 (289)
T ss_pred CeECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCc
Confidence 5799999999999999986 8999999999999999999999999999999999999875 5789999999999
Q ss_pred hHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHccc-CcEEEEecc
Q 012517 200 GIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQY-ADYLVINVS 278 (462)
Q Consensus 200 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~-aD~leiNvS 278 (462)
|.+.+.+++++..... ...++++||+++ +++ ||.++++.+.++ +|+||||+|
T Consensus 81 g~~~~~~~i~~~~~~~----------------------~~~pvi~si~g~--~~~---~~~~~a~~~~~~G~d~ielN~~ 133 (289)
T cd02810 81 GLDVWLQDIAKAKKEF----------------------PGQPLIASVGGS--SKE---DYVELARKIERAGAKALELNLS 133 (289)
T ss_pred CHHHHHHHHHHHHhcc----------------------CCCeEEEEeccC--CHH---HHHHHHHHHHHhCCCEEEEEcC
Confidence 9999999998754310 023799999875 555 777777777775 999999999
Q ss_pred CCCCCCccc-ccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCC
Q 012517 279 SPNTPGLRM-LQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPD 357 (462)
Q Consensus 279 sPnt~glr~-lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~ 357 (462)
|||++..+. +++++.+.+++++|++++ ++||+||++++++.+++.++++.+.++|+|+|+++|++.++..
T Consensus 134 cP~~~~~~~~~~~~~~~~eiv~~vr~~~---------~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~ 204 (289)
T cd02810 134 CPNVGGGRQLGQDPEAVANLLKAVKAAV---------DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVV 204 (289)
T ss_pred CCCCCCCcccccCHHHHHHHHHHHHHcc---------CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccce
Confidence 999986665 567789999999998763 6899999999999889999999999999999999999866432
Q ss_pred CCC--CCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHH
Q 012517 358 PVS--KNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIP 435 (462)
Q Consensus 358 ~~~--~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~ 435 (462)
... .+......||+||+++++.++++++++++.++.++|||++|||+|++|+.++|++|||+||++|+++++||++++
T Consensus 205 ~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~ 284 (289)
T cd02810 205 DLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIR 284 (289)
T ss_pred ecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHH
Confidence 111 112233578999999999999999999999865799999999999999999999999999999999998899999
Q ss_pred HHHHH
Q 012517 436 QIKAE 440 (462)
Q Consensus 436 ~i~~~ 440 (462)
+|+++
T Consensus 285 ~i~~~ 289 (289)
T cd02810 285 KIKKE 289 (289)
T ss_pred HHhcC
Confidence 99864
No 19
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=284.41 Aligned_cols=309 Identities=19% Similarity=0.201 Sum_probs=239.4
Q ss_pred CCCCccEEEcCeeeCCcEEeCCCC-CCCHHHHHHHHcCCccEEEecccccCC-CCCCCCCceeeecCCCcccccCCCCch
Q 012517 122 DPAILGLEVWGRKFSNPLGLAAGF-DKNAEAVEGLLGLGFGFVEVGSVTPVP-QEGNPKPRIFRLRQEGAIINRCGFNSE 199 (462)
Q Consensus 122 ~~~~L~v~v~Gl~f~NPiglAAG~-dk~~e~~~~l~~lGfG~VevgtvT~~p-q~GNp~PR~frl~~d~a~iN~~G~nn~ 199 (462)
+..+..++++|++++||+++++++ ..+++.+++.|.-||||++.+|+.+.. ..-|..||+.|.+... |.++ ++.
T Consensus 99 ~~ie~~vd~~G~k~~npf~~~s~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t~~---~~~~-p~~ 174 (471)
T KOG1799|consen 99 KSIEELVDWDGQKPANPFHQKSKPPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPTKR---SCFI-PKR 174 (471)
T ss_pred hhhhhhccccCccCCCccccCCCCCCccHHHHHhhhhcccchhheeeeecchhhheecccceeeccCCC---Cccc-cCC
Confidence 456678999999999999999986 899999999999999999999999865 4589999999987543 2222 222
Q ss_pred hHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEecc
Q 012517 200 GIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVINVS 278 (462)
Q Consensus 200 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiNvS 278 (462)
++-.-.+-+.++ +.+++.....+.+.+.|+ .+++.++..- .+.. +|.++..+..+ .+|.+|+|+|
T Consensus 175 ~i~~nielIsdr----~~e~~L~~f~eLk~~~p~------~imIas~Mci-ynk~---~w~el~d~~eqag~d~lE~nls 240 (471)
T KOG1799|consen 175 PIPTNIELISDR----KAEQYLGTFGELKNVEPV------VIMIASEMCI-YNKK---CWMELNDSGEQAGQDDLETNLS 240 (471)
T ss_pred Cccchhhhhccc----hHHHHHHHHHHhcccCCc------eeeehHHHHH-hhhh---hHHHHhhhHHhhcccchhccCC
Confidence 221111111111 112222222233333332 2455555320 0122 66666666655 3999999999
Q ss_pred CCCCCCcc-----cccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCc
Q 012517 279 SPNTPGLR-----MLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTI 353 (462)
Q Consensus 279 sPnt~glr-----~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~ 353 (462)
||+..+.| .-|.+..+.|++.+|+..+ ++|++-|++|+++ ++.+++..+...|+.||.++||..
T Consensus 241 cphgm~ergmgla~gq~p~v~~EvC~Wi~A~~---------~Ip~~~kmTPNit--d~revar~~~~~g~~GiaA~NTi~ 309 (471)
T KOG1799|consen 241 CPHGMCERGMGLALGQCPIVDCEVCGWINAKA---------TIPMVSKMTPNIT--DKREVARSVNPVGCEGIAAINTIM 309 (471)
T ss_pred CCCCCccccccceeccChhhhHHHhhhhhhcc---------ccccccccCCCcc--cccccchhcCcccccchhhHhHHH
Confidence 99986544 3488899999999998753 7999999999998 889999999999999999999976
Q ss_pred cCC----CCCCCCC---cccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 354 SRP----DPVSKNP---VAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 354 ~r~----~~~~~~~---~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
+-. +.+...+ .....||+|+++++|+++..|..|.+.++ .+||.|.|||.+++|+.++|.+|++.||+||++
T Consensus 310 SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V 388 (471)
T KOG1799|consen 310 SVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGV 388 (471)
T ss_pred HHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCcccccchhhHhhcCCcHhhhhhHH
Confidence 532 1111111 23468999999999999999999999997 799999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHcCCCCHHHhhccc
Q 012517 427 AYGGPALIPQIKAELAECLERDGFKSIIEAVGAD 460 (462)
Q Consensus 427 i~~GP~~i~~i~~~L~~~l~~~G~~si~e~~G~~ 460 (462)
+.+|.+.++.+..+|+++|+++||.+++|.+|..
T Consensus 389 ~~~~~~~V~~~Ca~LK~~m~~~~~~ti~~~~G~S 422 (471)
T KOG1799|consen 389 MMHGYGHVKTLCAELKDFMKQHNFSTIEEFRGHS 422 (471)
T ss_pred HhcCcchHHHHHHHHHHHHHHcCchhhhhccCcc
Confidence 9999999999999999999999999999999964
No 20
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.92 E-value=2.6e-24 Score=207.90 Aligned_cols=153 Identities=24% Similarity=0.288 Sum_probs=130.7
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCC------CCcccccCchHHHHHHHHHHHHHHhhccCCC
Q 012517 240 GILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNT------PGLRMLQGRKQLKDLVKKVQAARDEMQWGEE 313 (462)
Q Consensus 240 ~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt------~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~ 313 (462)
.++++|++.+ |++ +|.++++.+.+++|+|+||++||+. .|...+++++.+.++++++++
T Consensus 68 ~~vivnv~~~--~~e---e~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~---------- 132 (231)
T TIGR00736 68 ALVSVNVRFV--DLE---EAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE---------- 132 (231)
T ss_pred CCEEEEEecC--CHH---HHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc----------
Confidence 3799999875 666 9999999999999999999999995 355678999999999999983
Q ss_pred CCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC
Q 012517 314 GPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG 393 (462)
Q Consensus 314 ~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~ 393 (462)
.++||+|||+++.+.++..++++.++++|+|+|++.. + ++|.+ ...++.|+++++.++
T Consensus 133 ~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~----~---------------~~g~~--~a~~~~I~~i~~~~~- 190 (231)
T TIGR00736 133 LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA----M---------------YPGKP--YADMDLLKILSEEFN- 190 (231)
T ss_pred CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee----C---------------CCCCc--hhhHHHHHHHHHhcC-
Confidence 2689999999988766788999999999999998842 1 11211 147899999999984
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhc
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYG 429 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~ 429 (462)
++||||+|||.|++||.+++++|||+||++|+++..
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 499999999999999999999999999999999864
No 21
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.90 E-value=2.1e-22 Score=204.42 Aligned_cols=282 Identities=21% Similarity=0.239 Sum_probs=195.2
Q ss_pred cEEEcCeeeCCcEEeCCC---C-CCC-------HHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCC
Q 012517 127 GLEVWGRKFSNPLGLAAG---F-DKN-------AEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCG 195 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAAG---~-dk~-------~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G 195 (462)
|+++.+++++|+|.+++= . +.+ .+.+..+++.|+|.|+++.+.+.|. +...|+...+..|+ .+
T Consensus 3 p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~-~~~~~~~~~~~~~~-~~---- 76 (327)
T cd02803 3 PIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPE-GKGYPGQLGIYDDE-QI---- 76 (327)
T ss_pred CcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCc-ccCCCCCcCcCCHH-HH----
Confidence 567889999999999971 2 233 3456668889999999999888774 44455555554443 34
Q ss_pred CCchhHHHHHHHHHHhhccCcc--cccccCCCCCC-CcccCCCCCCCceEEEEecCCCCCHHH----HHHHHHHHHHHcc
Q 012517 196 FNSEGIVAVAKRLGAQHGKRKL--DETSRTSSSPN-DEVKAGGKAGPGILGVNIGKNKTSEDA----AADYVQGVHTLSQ 268 (462)
Q Consensus 196 ~nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~-~~~p~~~~~~~~~lgvnig~nk~t~~~----~~dy~~~~~~l~~ 268 (462)
+++..+++.+++...+... .|.++...... ...+.++|..+....-... ..+|.++ +++|+++++++.+
T Consensus 77 ---~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~mt~~ei~~~i~~~~~aA~~a~~ 152 (327)
T cd02803 77 ---PGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPP-REMTKEEIEQIIEDFAAAARRAKE 152 (327)
T ss_pred ---HHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCC-CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888888988876654322 33333221111 1112222211100000011 1345544 5799999999887
Q ss_pred -cCcEEEEecc---------CCCCCCccc------ccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC------
Q 012517 269 -YADYLVINVS---------SPNTPGLRM------LQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD------ 325 (462)
Q Consensus 269 -~aD~leiNvS---------sPnt~glr~------lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd------ 325 (462)
.+|.||||.. ||+++ .|. ++++ +++.+++++|++++ +.++||.||++++
T Consensus 153 aGfDgveih~~~gyL~~qFlsp~~n-~R~d~yGgs~enr~r~~~eii~avr~~~-------g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 153 AGFDGVEIHGAHGYLLSQFLSPYTN-KRTDEYGGSLENRARFLLEIVAAVREAV-------GPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred cCCCEEEEcchhhhHHHHhcCcccc-CCCcccCCCHHHHHHHHHHHHHHHHHHc-------CCCceEEEEechhccCCCC
Confidence 5999999865 89876 332 4444 77889999998875 3578999999986
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.++..++++.+.+.|+|.|.+++.+...+... . .. +.......++.++++++.+ ++||+++|||.+
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~-~-----~~----~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t 292 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPI-I-----PP----PYVPEGYFLELAEKIKKAV--KIPVIAVGGIRD 292 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc-c-----CC----CCCCcchhHHHHHHHHHHC--CCCEEEeCCCCC
Confidence 3567889999999999999999998764321100 0 00 1111234578889999998 799999999999
Q ss_pred HHHHHHHHHh-CCCEEEEchhhhhcCCChHHHHHH
Q 012517 406 GEDAYRKIRA-GATLVQLYTAFAYGGPALIPQIKA 439 (462)
Q Consensus 406 ~~dA~e~i~a-GAd~Vqv~Tali~~GP~~i~~i~~ 439 (462)
++++.++|+. |||+|+++|+++. +|++++++++
T Consensus 293 ~~~a~~~l~~g~aD~V~igR~~la-dP~l~~k~~~ 326 (327)
T cd02803 293 PEVAEEILAEGKADLVALGRALLA-DPDLPNKARE 326 (327)
T ss_pred HHHHHHHHHCCCCCeeeecHHHHh-CccHHHHHhc
Confidence 9999999998 6999999999986 7999999875
No 22
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.90 E-value=2.4e-22 Score=205.23 Aligned_cols=280 Identities=15% Similarity=0.154 Sum_probs=198.5
Q ss_pred cEEEcCeeeCCcEEeCCC----CC-CCH-------HHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccC
Q 012517 127 GLEVWGRKFSNPLGLAAG----FD-KNA-------EAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRC 194 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAAG----~d-k~~-------e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~ 194 (462)
|+++.+++++|+|.+++= .+ .+| +.+.++++.|+|.|++|.+.+.|. +...|....+..|+ .+
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~-~~~~~~~~~~~~d~-~i--- 80 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPE-GRISDKDLGIWDDE-HI--- 80 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECcc-ccCCCCceecCCHH-HH---
Confidence 678999999999999971 12 233 356678889999999998887764 44444544554443 45
Q ss_pred CCCchhHHHHHHHHHHhhccCcc--cccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHH----HHHHHHHHHHHcc
Q 012517 195 GFNSEGIVAVAKRLGAQHGKRKL--DETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDA----AADYVQGVHTLSQ 268 (462)
Q Consensus 195 G~nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~----~~dy~~~~~~l~~ 268 (462)
+++..+++.+++...+... .|.+..... .+.|.++|..+....-... ..+|.++ +++|+++++++.+
T Consensus 81 ----~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~--~~~~~~ps~~~~~~~~~~p-~~mt~eeI~~ii~~f~~aA~~a~~ 153 (337)
T PRK13523 81 ----EGLHKLVTFIHDHGAKAAIQLAHAGRKAEL--EGDIVAPSAIPFDEKSKTP-VEMTKEQIKETVLAFKQAAVRAKE 153 (337)
T ss_pred ----HHHHHHHHHHHhcCCEEEEEccCCCCCCCC--CCCccCCCCCCCCCCCCCC-CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999987655422 333332110 1112222221111000111 1356554 5699999999987
Q ss_pred -cCcEEEEecc---------CCCCCCc-----ccccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC------C
Q 012517 269 -YADYLVINVS---------SPNTPGL-----RMLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD------L 326 (462)
Q Consensus 269 -~aD~leiNvS---------sPnt~gl-----r~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd------l 326 (462)
.+|.||||.. ||.+|-. .+++++ +++.+++++|++++ +.||.|||+++ +
T Consensus 154 aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~---------~~~v~vRis~~d~~~~G~ 224 (337)
T PRK13523 154 AGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW---------DGPLFVRISASDYHPGGL 224 (337)
T ss_pred cCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc---------CCCeEEEecccccCCCCC
Confidence 4999999866 9988622 246666 88999999999874 57999999984 4
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH
Q 012517 327 SKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG 406 (462)
Q Consensus 327 ~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~ 406 (462)
+.++..++++.+++.|+|.|.++..+.... +. ..+.|. .+..++++++.+ ++|||++|+|.++
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~------~~----~~~~~~-----~~~~~~~ik~~~--~ipVi~~G~i~~~ 287 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVPA------RI----DVYPGY-----QVPFAEHIREHA--NIATGAVGLITSG 287 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCC------CC----CCCccc-----cHHHHHHHHhhc--CCcEEEeCCCCCH
Confidence 667889999999999999999987653211 00 011221 356778899988 7999999999999
Q ss_pred HHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHHHHH
Q 012517 407 EDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELAECL 445 (462)
Q Consensus 407 ~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~~~l 445 (462)
++|.++|+.| ||+|+++++++. +|+|++++++++...+
T Consensus 288 ~~a~~~l~~g~~D~V~~gR~~ia-dP~~~~k~~~~~~~~~ 326 (337)
T PRK13523 288 AQAEEILQNNRADLIFIGRELLR-NPYFPRIAAKELGFEI 326 (337)
T ss_pred HHHHHHHHcCCCChHHhhHHHHh-CccHHHHHHHHcCCCC
Confidence 9999999988 999999999987 7999999998886543
No 23
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.89 E-value=1.2e-21 Score=198.88 Aligned_cols=227 Identities=21% Similarity=0.239 Sum_probs=166.5
Q ss_pred cCeeeCCcEEeCCCC-CCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHH
Q 012517 131 WGRKFSNPLGLAAGF-DKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLG 209 (462)
Q Consensus 131 ~Gl~f~NPiglAAG~-dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~ 209 (462)
.|+.++||+.+|+-. -.|...-..+.+.|.+++.+..+..+.. + ++++ .....+.
T Consensus 2 ~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l-----------------~----~~~~---~~~~~~~ 57 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAI-----------------V----YDSQ---RTMRLLD 57 (319)
T ss_pred CCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhh-----------------h----cCCH---HHHHHhh
Confidence 578999999999854 2444444446778888888777764321 1 0111 1111111
Q ss_pred HhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHccc-CcEEEEeccCCCCC----C
Q 012517 210 AQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQY-ADYLVINVSSPNTP----G 284 (462)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~----g 284 (462)
.. + ...|+++||..| +++ ++.++++++.++ +|.|+||++||+.. +
T Consensus 58 -~~-------------------~-----~~~p~i~ql~g~--~~~---~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~ 107 (319)
T TIGR00737 58 -IA-------------------E-----DETPISVQLFGS--DPD---TMAEAAKINEELGADIIDINMGCPVPKITKKG 107 (319)
T ss_pred -cC-------------------C-----ccceEEEEEeCC--CHH---HHHHHHHHHHhCCCCEEEEECCCCHHHhcCCC
Confidence 00 0 123799999886 676 777777777764 99999999999631 2
Q ss_pred cc--cccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCCh--hhHHHHHHHHHHcCCcEEEEecCCccCCCCCC
Q 012517 285 LR--MLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSK--EDLEDIAAVAVALRLDGLIISNTTISRPDPVS 360 (462)
Q Consensus 285 lr--~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~--~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~ 360 (462)
.. .+++++.+.+++++|++++ ++||.||++...++ .+..++++.+.+.|+|+|++++.+.
T Consensus 108 ~Gs~l~~~~~~~~ei~~~vr~~~---------~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~------- 171 (319)
T TIGR00737 108 AGSALLRDPDLIGKIVKAVVDAV---------DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTR------- 171 (319)
T ss_pred ccchHhCCHHHHHHHHHHHHhhc---------CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccc-------
Confidence 22 2467789999999998764 68999999865432 3578999999999999999986431
Q ss_pred CCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHH-HhCCCEEEEchhhhhcCCChHHHHHH
Q 012517 361 KNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKI-RAGATLVQLYTAFAYGGPALIPQIKA 439 (462)
Q Consensus 361 ~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i-~aGAd~Vqv~Tali~~GP~~i~~i~~ 439 (462)
.++++|++ .++.++++++.+ ++|||++|||.|++|+.+++ ..|||+||++++++. +|++++++++
T Consensus 172 -------~~~~~~~~----~~~~i~~i~~~~--~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~-~P~l~~~~~~ 237 (319)
T TIGR00737 172 -------AQGYSGEA----NWDIIARVKQAV--RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG-NPWLFRQIEQ 237 (319)
T ss_pred -------cccCCCch----hHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh-CChHHHHHHH
Confidence 24566654 478899999998 69999999999999999999 578999999999975 7999988865
Q ss_pred HH
Q 012517 440 EL 441 (462)
Q Consensus 440 ~L 441 (462)
.+
T Consensus 238 ~~ 239 (319)
T TIGR00737 238 YL 239 (319)
T ss_pred HH
Confidence 33
No 24
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.89 E-value=3.5e-21 Score=197.64 Aligned_cols=284 Identities=21% Similarity=0.244 Sum_probs=201.7
Q ss_pred cEEEcCeeeCCcEEeCC---------C--CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCC
Q 012517 127 GLEVWGRKFSNPLGLAA---------G--FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCG 195 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA---------G--~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G 195 (462)
|+++.+++|+|+|.+|+ | .|...+++.+.++.|+|.++++++.+.| .|...|....+..|+- |
T Consensus 9 P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~-~g~~~~~~~~l~~d~~-i---- 82 (363)
T COG1902 9 PLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDP-GGRGYPGQPGLWSDAQ-I---- 82 (363)
T ss_pred CeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCc-ccccCCCCCccCChhH-h----
Confidence 67899999999999985 2 1334578888999999999999665555 4555555555554432 4
Q ss_pred CCchhHHHHHHHHHHhhccCcc--cccccCCCCCCCc--ccCCCCCCCceEE-EEecCCCCCHHH----HHHHHHHHHHH
Q 012517 196 FNSEGIVAVAKRLGAQHGKRKL--DETSRTSSSPNDE--VKAGGKAGPGILG-VNIGKNKTSEDA----AADYVQGVHTL 266 (462)
Q Consensus 196 ~nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~--~p~~~~~~~~~lg-vnig~nk~t~~~----~~dy~~~~~~l 266 (462)
+|+..+++.+++...+..+ .|.++........ .+.++|....... -... -.+|.++ ++||+++++++
T Consensus 83 ---~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~p-r~mt~~eI~~ii~~f~~AA~rA 158 (363)
T COG1902 83 ---PGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATP-RELTEEEIEEVIEDFARAARRA 158 (363)
T ss_pred ---HHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCC-ccCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999987766543 4444322111111 1122221111111 0011 1345444 57999999999
Q ss_pred cc-cCcEEEE---------eccCCCCCCcc-----cccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCC----
Q 012517 267 SQ-YADYLVI---------NVSSPNTPGLR-----MLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDL---- 326 (462)
Q Consensus 267 ~~-~aD~lei---------NvSsPnt~glr-----~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl---- 326 (462)
.+ .+|+||| +|.||.+|-.. +++|+ +++.|++++|++++ +.+.||.+||||+.
T Consensus 159 ~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~v-------g~~~~vg~Rls~~d~~~~ 231 (363)
T COG1902 159 KEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAV-------GADFPVGVRLSPDDFFDG 231 (363)
T ss_pred HHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHh-------CCCceEEEEECccccCCC
Confidence 87 4999999 49999998322 36777 78999999999987 45789999999953
Q ss_pred ---ChhhHHHHHHHHHHcC-CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecC
Q 012517 327 ---SKEDLEDIAAVAVALR-LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGG 402 (462)
Q Consensus 327 ---~~~~~~~ia~~~~~~G-vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GG 402 (462)
+.++..++++.+.+.| +|.|.++.....+.... ...+ ...-+....++++.+ ++|+|++|+
T Consensus 232 ~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~-------~~~~------~~~~~~~a~~i~~~~--~~pvi~~G~ 296 (363)
T COG1902 232 GGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTI-------TVSG------PGYQVEFAARIKKAV--RIPVIAVGG 296 (363)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCc-------cccc------cchhHHHHHHHHHhc--CCCEEEeCC
Confidence 3458899999999999 79999997654332110 0011 112346667788888 699999999
Q ss_pred CCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHHH
Q 012517 403 ISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELAE 443 (462)
Q Consensus 403 I~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~~ 443 (462)
|.++++|.+.|+.| ||+|.++++|+. +|+|+.++++++..
T Consensus 297 i~~~~~Ae~~l~~g~aDlVa~gR~~la-dP~~~~k~~~g~~~ 337 (363)
T COG1902 297 INDPEQAEEILASGRADLVAMGRPFLA-DPDLVLKAAEGREL 337 (363)
T ss_pred CCCHHHHHHHHHcCCCCEEEechhhhc-CccHHHHHHcCCCc
Confidence 99999999999998 999999999997 79999999998753
No 25
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.89 E-value=1.2e-21 Score=198.87 Aligned_cols=167 Identities=22% Similarity=0.273 Sum_probs=136.3
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCC------CcccccCchHHHHHHHHHHHHHHhhccCC
Q 012517 240 GILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVINVSSPNTP------GLRMLQGRKQLKDLVKKVQAARDEMQWGE 312 (462)
Q Consensus 240 ~~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~------glr~lq~~~~l~~ll~aV~~~~~~~~~~~ 312 (462)
.++++||.+| +++ +|+++++.+.+ .+|.|+||++||+.. |...+++++.+.+++++|+++.
T Consensus 65 ~~~~vQl~g~--~~~---~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~------- 132 (321)
T PRK10415 65 GIRTVQIAGS--DPK---EMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV------- 132 (321)
T ss_pred CCEEEEEeCC--CHH---HHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-------
Confidence 3688999876 666 78888887654 599999999999842 3334788999999999998763
Q ss_pred CCCCCEEEEecCCCCh--hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHh
Q 012517 313 EGPPPLLVKIAPDLSK--EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLL 390 (462)
Q Consensus 313 ~~~~Pv~vKispdl~~--~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~ 390 (462)
++||.||++..++. ++..++++.+++.|+|+|+++..+. .+.++|++ .++.++++++.
T Consensus 133 --d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~--------------~~~~~G~a----~~~~i~~ik~~ 192 (321)
T PRK10415 133 --DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR--------------ACLFNGEA----EYDSIRAVKQK 192 (321)
T ss_pred --CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCcc--------------ccccCCCc----ChHHHHHHHHh
Confidence 68999999865543 3688999999999999999987541 13445544 46889999999
Q ss_pred cCCCccEEEecCCCCHHHHHHHHH-hCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 391 TRGKIPLIGCGGISSGEDAYRKIR-AGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 391 ~~~~ipIIg~GGI~s~~dA~e~i~-aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
+ ++|||++|||.|++|+.++++ .|||.||++|+++. +|+++.++++.+
T Consensus 193 ~--~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~-nP~if~~~~~~~ 241 (321)
T PRK10415 193 V--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG-RPWIFREIQHYL 241 (321)
T ss_pred c--CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc-CChHHHHHHHHH
Confidence 8 799999999999999999997 79999999999976 799999987543
No 26
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.89 E-value=4.5e-21 Score=196.10 Aligned_cols=288 Identities=18% Similarity=0.186 Sum_probs=196.1
Q ss_pred cEEEc-CeeeCCcEEeCC---CC-CCCH-------HHHHHHHcCCccEEEecccccCCCCCCCCC---ceeeecCCCccc
Q 012517 127 GLEVW-GRKFSNPLGLAA---GF-DKNA-------EAVEGLLGLGFGFVEVGSVTPVPQEGNPKP---RIFRLRQEGAII 191 (462)
Q Consensus 127 ~v~v~-Gl~f~NPiglAA---G~-dk~~-------e~~~~l~~lGfG~VevgtvT~~pq~GNp~P---R~frl~~d~a~i 191 (462)
|+++. |++|+|+|++++ ++ +.+| +.+.+.++.|+|.|+++.+.+.+. |...| +...+..|+ .+
T Consensus 4 P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~-~~~~~~~~~~~~~~~d~-~i 81 (338)
T cd04733 4 PLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPR-HLEEPGIIGNVVLESGE-DL 81 (338)
T ss_pred CeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcc-cccCCCcCCCcccCCHH-HH
Confidence 67898 599999999997 23 3444 345667888999999998877653 44444 333444443 45
Q ss_pred ccCCCCchhHHHHHHHHHHhhccCcc--cccccCCCCCCCcccCCCCCCCceEEEEec---CCCCCHHH----HHHHHHH
Q 012517 192 NRCGFNSEGIVAVAKRLGAQHGKRKL--DETSRTSSSPNDEVKAGGKAGPGILGVNIG---KNKTSEDA----AADYVQG 262 (462)
Q Consensus 192 N~~G~nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~lgvnig---~nk~t~~~----~~dy~~~ 262 (462)
+|+..+++.+++...+... .|.+..........|.++|..+.+...+.. ...+|.++ +++|+++
T Consensus 82 -------~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~a 154 (338)
T cd04733 82 -------EAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHA 154 (338)
T ss_pred -------HHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHH
Confidence 8899999999987765432 333332211111122223222111110000 11345544 5799999
Q ss_pred HHHHccc-CcEEEEecc---------CCCCCCc-----ccccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecC--
Q 012517 263 VHTLSQY-ADYLVINVS---------SPNTPGL-----RMLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAP-- 324 (462)
Q Consensus 263 ~~~l~~~-aD~leiNvS---------sPnt~gl-----r~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKisp-- 324 (462)
++++.+. +|.||||.. ||.+|-. .+++|+ +++.+++++|++++ +.++||.+|+++
T Consensus 155 A~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av-------G~d~~v~vris~~~ 227 (338)
T cd04733 155 ARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV-------GPGFPVGIKLNSAD 227 (338)
T ss_pred HHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc-------CCCCeEEEEEcHHH
Confidence 9999874 999999866 6988721 246666 88999999999886 357899999985
Q ss_pred ----CCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe
Q 012517 325 ----DLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC 400 (462)
Q Consensus 325 ----dl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~ 400 (462)
.++.++..++++.+++.|+|.|.++..+...+...... ......+ ....++..+++++.+ ++||+++
T Consensus 228 ~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~ik~~v--~iPVi~~ 298 (338)
T cd04733 228 FQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAK-----KESTIAR--EAYFLEFAEKIRKVT--KTPLMVT 298 (338)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccc-----cCCcccc--chhhHHHHHHHHHHc--CCCEEEe
Confidence 36677889999999999999999987653211000000 0000000 012357778899998 7999999
Q ss_pred cCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHH
Q 012517 401 GGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 401 GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
|+|.+++++.++|+.| ||+|+++++++. +|+|++|++++
T Consensus 299 G~i~t~~~a~~~l~~g~aD~V~lgR~~ia-dP~~~~k~~~g 338 (338)
T cd04733 299 GGFRTRAAMEQALASGAVDGIGLARPLAL-EPDLPNKLLAG 338 (338)
T ss_pred CCCCCHHHHHHHHHcCCCCeeeeChHhhh-CccHHHHHhcC
Confidence 9999999999999987 999999999987 79999999763
No 27
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.88 E-value=6.4e-21 Score=194.81 Aligned_cols=279 Identities=21% Similarity=0.214 Sum_probs=192.7
Q ss_pred cEEEcCeeeCCcEEeCCC---CCCCH-------HHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCC
Q 012517 127 GLEVWGRKFSNPLGLAAG---FDKNA-------EAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGF 196 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAAG---~dk~~-------e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~ 196 (462)
|+++.+++|+|+|.+++= .+.+| +.+.++++.|+|.|++|.+.+.|. +...|+...+.+|+ .+
T Consensus 4 P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~-~~~~~~~~~~~~d~-~~----- 76 (336)
T cd02932 4 PLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPE-GRITPGDLGLWNDE-QI----- 76 (336)
T ss_pred CeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCC-cCCCCCceeecCHH-HH-----
Confidence 678999999999999972 22233 356668889999999999888774 44455555555443 55
Q ss_pred CchhHHHHHHHHHHhhccCcc--cccccCCCCCCC--------------cccCCCCCCCceEEEEecCCCCCHHH----H
Q 012517 197 NSEGIVAVAKRLGAQHGKRKL--DETSRTSSSPND--------------EVKAGGKAGPGILGVNIGKNKTSEDA----A 256 (462)
Q Consensus 197 nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~--------------~~p~~~~~~~~~lgvnig~nk~t~~~----~ 256 (462)
+++..+++.+++...+... .|.++....... ..|.++|..+....-... ..+|.++ +
T Consensus 77 --~~~~~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p-~~mt~~eI~~ii 153 (336)
T cd02932 77 --EALKRIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTP-RELTREEIAEVV 153 (336)
T ss_pred --HHHHHHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCC-CcCCHHHHHHHH
Confidence 8899999999987655322 333332111000 011111111000000000 1345544 5
Q ss_pred HHHHHHHHHHcc-cCcEEEEecc---------CCCCCCc-----ccccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 257 ADYVQGVHTLSQ-YADYLVINVS---------SPNTPGL-----RMLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 257 ~dy~~~~~~l~~-~aD~leiNvS---------sPnt~gl-----r~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
++|+++++++.+ .+|+||||.. ||.++-. .++.++ +++.+++++|++++ +.++||.+
T Consensus 154 ~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v-------G~d~~v~v 226 (336)
T cd02932 154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW-------PEDKPLFV 226 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc-------CCCceEEE
Confidence 799999999876 5999999964 5766521 135555 88999999999875 45789999
Q ss_pred EecCC------CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcC-ccchHHHHHHHHHhcCC
Q 012517 321 KIAPD------LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPL-LSLSNNILKEMYLLTRG 393 (462)
Q Consensus 321 Kispd------l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l-~~~al~~v~~i~~~~~~ 393 (462)
|++++ ++.++..++++.+++.|+|.|.++........ . .+. ....++.++++++.+
T Consensus 227 ri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~--~-------------~~~~~~~~~~~~~~ir~~~-- 289 (336)
T cd02932 227 RISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQ--K-------------IPVGPGYQVPFAERIRQEA-- 289 (336)
T ss_pred EEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCccc--c-------------cCCCccccHHHHHHHHhhC--
Confidence 99964 45678889999999999999998754321110 0 011 112357788999998
Q ss_pred CccEEEecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHH
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
++||+++|||.+++++.++|+.| ||+|+++|+++. +|++++++.++
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~-dP~~~~k~~~~ 336 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR-NPYWPLHAAAE 336 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh-CccHHHHHhhC
Confidence 79999999999999999999998 999999999987 79999998753
No 28
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.88 E-value=1.3e-20 Score=193.17 Aligned_cols=289 Identities=17% Similarity=0.155 Sum_probs=197.7
Q ss_pred cEEEcCeeeCCcEEeCC---CCCCCH-------HHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCC
Q 012517 127 GLEVWGRKFSNPLGLAA---GFDKNA-------EAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGF 196 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA---G~dk~~-------e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~ 196 (462)
|.++.+++++|+|.+|+ +..++| +.+..+++.|+|.|+++.+.+.|. |...|+...+.+|+ .+
T Consensus 4 P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~-~~~~~~~~~l~~d~-~i----- 76 (343)
T cd04734 4 PLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPS-DSPAFGNLNASDDE-II----- 76 (343)
T ss_pred CeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCc-ccCCCCccccCCHH-HH-----
Confidence 57899999999999997 222333 456678889999999998888764 55556655665544 44
Q ss_pred CchhHHHHHHHHHHhhccCcc--cccccCCCCCCCcc-cCCCCCCCceEEEEecCCCCCHHH----HHHHHHHHHHHcc-
Q 012517 197 NSEGIVAVAKRLGAQHGKRKL--DETSRTSSSPNDEV-KAGGKAGPGILGVNIGKNKTSEDA----AADYVQGVHTLSQ- 268 (462)
Q Consensus 197 nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~-p~~~~~~~~~lgvnig~nk~t~~~----~~dy~~~~~~l~~- 268 (462)
+++..+++.+++...+... .|.+........+. |.++|..+...- ......+|.++ +++|+++++++.+
T Consensus 77 --~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~-~~~~~~mt~~eI~~ii~~f~~AA~ra~~a 153 (343)
T cd04734 77 --PGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRH-RAVPKAMEEEDIEEIIAAFADAARRCQAG 153 (343)
T ss_pred --HHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCC-CCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 8889999999987654332 33332221110111 222221110000 00012356554 5799999999876
Q ss_pred cCcEEEEec---------cCCCCCCc-----ccccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC------CC
Q 012517 269 YADYLVINV---------SSPNTPGL-----RMLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD------LS 327 (462)
Q Consensus 269 ~aD~leiNv---------SsPnt~gl-----r~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd------l~ 327 (462)
.+|+||||. .||.++.. .+++++ +++.+++++|++++ +.++||.+||+++ ++
T Consensus 154 GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~v-------g~~~~v~iRl~~~~~~~~G~~ 226 (343)
T cd04734 154 GLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAV-------GPDFIVGIRISGDEDTEGGLS 226 (343)
T ss_pred CCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHc-------CCCCeEEEEeehhhccCCCCC
Confidence 599999997 39988732 246666 88999999999875 3578999999985 34
Q ss_pred hhhHHHHHHHHHHcC-CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH
Q 012517 328 KEDLEDIAAVAVALR-LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG 406 (462)
Q Consensus 328 ~~~~~~ia~~~~~~G-vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~ 406 (462)
.++..++++.+++.| +|.|.++........... ... .. .+.++ ...++.++++++.+ ++|||++|||.++
T Consensus 227 ~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~-~~~--~~-~~~~~---~~~~~~~~~ik~~~--~ipvi~~G~i~~~ 297 (343)
T cd04734 227 PDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLA-HVV--PS-MGMPP---GPFLPLAARIKQAV--DLPVFHAGRIRDP 297 (343)
T ss_pred HHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccc-ccc--CC-CCCCc---chhHHHHHHHHHHc--CCCEEeeCCCCCH
Confidence 568889999999998 899999755432110000 000 00 01111 12367788899998 7999999999999
Q ss_pred HHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 407 EDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 407 ~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
+++.++|+.| ||+|+++++++. +|+|+++++++..
T Consensus 298 ~~~~~~l~~~~~D~V~~gR~~la-dP~l~~k~~~g~~ 333 (343)
T cd04734 298 AEAEQALAAGHADMVGMTRAHIA-DPHLVAKAREGRE 333 (343)
T ss_pred HHHHHHHHcCCCCeeeecHHhHh-CccHHHHHHcCCc
Confidence 9999999976 999999999987 6999999987653
No 29
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.87 E-value=2.6e-20 Score=193.36 Aligned_cols=288 Identities=15% Similarity=0.142 Sum_probs=192.0
Q ss_pred cEEEcCeeeCCcEEeCC-C---C-CCCH-------HHHHHHHcCCccEEEecccccCCCC-CCCCCcee--eecCCCccc
Q 012517 127 GLEVWGRKFSNPLGLAA-G---F-DKNA-------EAVEGLLGLGFGFVEVGSVTPVPQE-GNPKPRIF--RLRQEGAII 191 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA-G---~-dk~~-------e~~~~l~~lGfG~VevgtvT~~pq~-GNp~PR~f--rl~~d~a~i 191 (462)
|+++.+++|+|+|.+|+ + + +.++ +.+.++++.|+|.|++|.+.+.|.. +...|... .+. ++..|
T Consensus 4 P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~-~~~~i 82 (382)
T cd02931 4 PIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYN-PTAFI 82 (382)
T ss_pred CeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccC-CHHHh
Confidence 67899999999999997 3 2 3454 2455578889999999987776642 11112221 111 12233
Q ss_pred ccCCCCchhHHHHHHHHHHhhccCcc--ccc-ccCCCCC-C-CcccCCCCCCCceEEEEecCCCCCHHH----HHHHHHH
Q 012517 192 NRCGFNSEGIVAVAKRLGAQHGKRKL--DET-SRTSSSP-N-DEVKAGGKAGPGILGVNIGKNKTSEDA----AADYVQG 262 (462)
Q Consensus 192 N~~G~nn~G~~~~~~~l~~~~~~~~~--~~~-~~~~~~~-~-~~~p~~~~~~~~~lgvnig~nk~t~~~----~~dy~~~ 262 (462)
+++..+++.+++...+... .|. ++..... . ...|.++|..+.+..-......+|.++ +++|+++
T Consensus 83 -------~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~A 155 (382)
T cd02931 83 -------RTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGES 155 (382)
T ss_pred -------HHHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 7888999999887655432 232 2221111 0 012233332221110001112356544 5799999
Q ss_pred HHHHcc-cCcEEEEec----------cCCCCCCcc-----cccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC
Q 012517 263 VHTLSQ-YADYLVINV----------SSPNTPGLR-----MLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD 325 (462)
Q Consensus 263 ~~~l~~-~aD~leiNv----------SsPnt~glr-----~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd 325 (462)
++++.+ .+|+||||. .||.+|-.. +++++ +++.+++++|++++ +.++||.+||+++
T Consensus 156 A~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~-------g~~f~v~vri~~~ 228 (382)
T cd02931 156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARC-------GEDFPVSLRYSVK 228 (382)
T ss_pred HHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhc-------CCCceEEEEEech
Confidence 999987 599999974 468887221 35665 88999999999875 3578999999963
Q ss_pred --------------------CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHH
Q 012517 326 --------------------LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILK 385 (462)
Q Consensus 326 --------------------l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~ 385 (462)
++.++..++++.+++.|+|.|.++..+..... ...++. +.++. ..+..++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~-~~~~~~------~~~~~---~~~~~~~ 298 (382)
T cd02931 229 SYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWY-WNHPPM------YQKKG---MYLPYCK 298 (382)
T ss_pred hhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccc-cccCCc------cCCcc---hhHHHHH
Confidence 24467889999999999999999866532110 000110 01111 1246778
Q ss_pred HHHHhcCCCccEEEecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 386 EMYLLTRGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 386 ~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
.+++.+ ++|||++|||.+++++.++|+.| ||+|+++++++. +|+|+++++++..
T Consensus 299 ~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la-dP~l~~k~~~g~~ 353 (382)
T cd02931 299 ALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA-DPDVVNKIRRGRF 353 (382)
T ss_pred HHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh-CccHHHHHHcCCc
Confidence 899998 79999999999999999999987 999999999987 7999999998753
No 30
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.87 E-value=1e-20 Score=194.58 Aligned_cols=286 Identities=19% Similarity=0.183 Sum_probs=193.8
Q ss_pred cEEEcC-eeeCCcEEeCC---CC-CCCH-------HHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccC
Q 012517 127 GLEVWG-RKFSNPLGLAA---GF-DKNA-------EAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRC 194 (462)
Q Consensus 127 ~v~v~G-l~f~NPiglAA---G~-dk~~-------e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~ 194 (462)
|+++.+ ++++|+|.+++ ++ +.+| +++.++++. +|.|+++.+.+.|. +...|+...+..|+ .+
T Consensus 4 P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g-~glIi~e~~~v~~~-~~~~~~~~~~~~d~-~i--- 77 (353)
T cd04735 4 PFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGG-VGMVITGATYVSPS-GIGFEGGFSADDDS-DI--- 77 (353)
T ss_pred CEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCC-CCEEEECceEECcc-cCcCCCCceecChh-hh---
Confidence 678887 99999999997 23 3344 244556664 99999998887764 44445555555444 44
Q ss_pred CCCchhHHHHHHHHHHhhccCcc--cccccCCCCCC--CcccCCCCCCCceEEEEecCCCCCHHH----HHHHHHHHHHH
Q 012517 195 GFNSEGIVAVAKRLGAQHGKRKL--DETSRTSSSPN--DEVKAGGKAGPGILGVNIGKNKTSEDA----AADYVQGVHTL 266 (462)
Q Consensus 195 G~nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~--~~~p~~~~~~~~~lgvnig~nk~t~~~----~~dy~~~~~~l 266 (462)
+++..+++.+++...+... .|.++...... ...|.++|..+..-........+|.++ +++|+++++++
T Consensus 78 ----~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a 153 (353)
T cd04735 78 ----PGLRKLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRA 153 (353)
T ss_pred ----HHHHHHHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999987765432 33333221110 011222221110000000011345444 57999999999
Q ss_pred cc-cCcEEEEec---------cCCCCCCc-----ccccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC-----
Q 012517 267 SQ-YADYLVINV---------SSPNTPGL-----RMLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD----- 325 (462)
Q Consensus 267 ~~-~aD~leiNv---------SsPnt~gl-----r~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd----- 325 (462)
.+ .+|+||||. .||.+|-. .+++|+ +++.+++++|++++.. ....++||.+|++++
T Consensus 154 ~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~---~~~~~~~v~~R~s~~~~~~~ 230 (353)
T cd04735 154 IEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDK---HADKDFILGYRFSPEEPEEP 230 (353)
T ss_pred HHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcc---ccCCCceEEEEECcccccCC
Confidence 87 499999984 68988722 246666 7899999999988620 001478999999985
Q ss_pred -CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC
Q 012517 326 -LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS 404 (462)
Q Consensus 326 -l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~ 404 (462)
++.++..++++.+.+.|+|.|.++..+..... . .... .....++.+++.+..++|||++|||+
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~-----~----~~~~-------~~~~~~~~ik~~~~~~iPVi~~Ggi~ 294 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLWDFDRKS-----R----RGRD-------DNQTIMELVKERIAGRLPLIAVGSIN 294 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcccccc-----c----cCCc-------chHHHHHHHHHHhCCCCCEEEECCCC
Confidence 34578899999999999999999865422110 0 0000 12345566777765579999999999
Q ss_pred CHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 405 SGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 405 s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
|++++.++|+.|||+|+++++++. +|+++++++++..
T Consensus 295 t~e~ae~~l~~gaD~V~~gR~lia-dPdl~~k~~~G~~ 331 (353)
T cd04735 295 TPDDALEALETGADLVAIGRGLLV-DPDWVEKIKEGRE 331 (353)
T ss_pred CHHHHHHHHHcCCChHHHhHHHHh-CccHHHHHHcCCh
Confidence 999999999999999999999997 6999999998754
No 31
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.87 E-value=1.1e-20 Score=183.57 Aligned_cols=153 Identities=21% Similarity=0.310 Sum_probs=127.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCC------CcccccCchHHHHHHHHHHHHHHhhccCCCC
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTP------GLRMLQGRKQLKDLVKKVQAARDEMQWGEEG 314 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~------glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~ 314 (462)
++++||..+ +++ ++.++++.+.+++|.|+||++||+.. |...+++++.+.+++++|++.
T Consensus 74 p~~vqi~g~--~~~---~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~---------- 138 (233)
T cd02911 74 LVGVNVRSS--SLE---PLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET---------- 138 (233)
T ss_pred eEEEEecCC--CHH---HHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc----------
Confidence 799999875 566 88888888888899999999999972 334578899999999999852
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
++||+||+++..+ ++..++++.++++|+|+|++.++.. |. ...++.+++++ + +
T Consensus 139 ~~pVsvKir~g~~-~~~~~la~~l~~aG~d~ihv~~~~~-------------------g~---~ad~~~I~~i~--~--~ 191 (233)
T cd02911 139 GVPVSVKIRAGVD-VDDEELARLIEKAGADIIHVDAMDP-------------------GN---HADLKKIRDIS--T--E 191 (233)
T ss_pred CCCEEEEEcCCcC-cCHHHHHHHHHHhCCCEEEECcCCC-------------------CC---CCcHHHHHHhc--C--C
Confidence 6899999999887 6889999999999999998764321 11 12356677776 4 7
Q ss_pred ccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHH
Q 012517 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 395 ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~ 438 (462)
+|||++|||.|++||.++++.|||+||++|+ ..|+++.+|+
T Consensus 192 ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~---~~p~~~~~~~ 232 (233)
T cd02911 192 LFIIGNNSVTTIESAKEMFSYGADMVSVARA---SLPENIEWLV 232 (233)
T ss_pred CEEEEECCcCCHHHHHHHHHcCCCEEEEcCC---CCchHHHHhh
Confidence 9999999999999999999999999999999 4799998775
No 32
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.87 E-value=3.2e-20 Score=189.43 Aligned_cols=272 Identities=18% Similarity=0.173 Sum_probs=172.6
Q ss_pred CCCCCCccEEEcCeeeCCcEEeCCCC--C-C----CHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccc
Q 012517 120 RPDPAILGLEVWGRKFSNPLGLAAGF--D-K----NAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIIN 192 (462)
Q Consensus 120 ~~~~~~L~v~v~Gl~f~NPiglAAG~--d-k----~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN 192 (462)
..++.+|+++++|.+|++||.++|-. . . |.+......+.|.... +|+..
T Consensus 37 ~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~-~Gs~~----------------------- 92 (333)
T TIGR02151 37 NLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMG-VGSQR----------------------- 92 (333)
T ss_pred CcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeE-EcCch-----------------------
Confidence 44678999999999999999999832 2 1 2223333445554332 34321
Q ss_pred cCCCCchh-HHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCc
Q 012517 193 RCGFNSEG-IVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYAD 271 (462)
Q Consensus 193 ~~G~nn~G-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD 271 (462)
.++.++- .+.+ +.+++... ..|+++|++........++++.+.++.+. +|
T Consensus 93 -~~~~~~~~~~~~-~~vr~~~~-------------------------~~p~i~nl~~~~~~~~~~~~~~~~i~~i~--ad 143 (333)
T TIGR02151 93 -AALKDPETADTF-EVVREEAP-------------------------NGPLIANIGAPQLVEGGPEEAQEAIDMIE--AD 143 (333)
T ss_pred -hhccChhhHhHH-HHHHHhCC-------------------------CCcEEeecCchhhccccHHHHHHHHHHhc--CC
Confidence 1111221 1122 33332211 24788999764222222667888888886 99
Q ss_pred EEEEeccCCCCCCccccc-CchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEec
Q 012517 272 YLVINVSSPNTPGLRMLQ-GRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISN 350 (462)
Q Consensus 272 ~leiNvSsPnt~glr~lq-~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsN 350 (462)
++++|+.|+.......-. +-+.+.+.+++|++. .++||+||+...- ...+.++.+.+.|+|+|+++|
T Consensus 144 al~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~---------~~vPVivK~~g~g---~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 144 ALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQ---------LSVPVIVKEVGFG---ISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred CEEEcCcccccccCCCCCcCHHHHHHHHHHHHHh---------cCCCEEEEecCCC---CCHHHHHHHHHcCCCEEEECC
Confidence 999999887653111101 012233555555554 2799999998652 346889999999999999998
Q ss_pred CCccCCC-CCCCCCccccc-CCCCCCcCccchHHHHHHHHH-hcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 351 TTISRPD-PVSKNPVAKET-GGLSGKPLLSLSNNILKEMYL-LTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 351 Tt~~r~~-~~~~~~~~~~~-GGlSG~~l~~~al~~v~~i~~-~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
.. +... ........... |.+--.. .....+.+.++++ .. ++|||++|||.+++|+.++|.+|||+||++++++
T Consensus 212 ~g-Gt~~~~ie~~r~~~~~~~~~~~~~-g~~t~~~l~~~~~~~~--~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L 287 (333)
T TIGR02151 212 AG-GTSWAQVENYRAKGSNLASFFNDW-GIPTAASLLEVRSDAP--DAPIIASGGLRTGLDVAKAIALGADAVGMARPFL 287 (333)
T ss_pred CC-CCcccchhhhcccccccchhhhcc-cHhHHHHHHHHHhcCC--CCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHH
Confidence 53 1110 00000000000 1100000 0113456667766 33 7999999999999999999999999999999998
Q ss_pred h----cCCC----hHHHHHHHHHHHHHHcCCCCHHHhhccc
Q 012517 428 Y----GGPA----LIPQIKAELAECLERDGFKSIIEAVGAD 460 (462)
Q Consensus 428 ~----~GP~----~i~~i~~~L~~~l~~~G~~si~e~~G~~ 460 (462)
. .||+ ++..+.++|+.+|...|++|++|+++..
T Consensus 288 ~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~~ 328 (333)
T TIGR02151 288 KAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKVP 328 (333)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHccCC
Confidence 4 5676 7888899999999999999999998753
No 33
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.87 E-value=5.9e-20 Score=186.94 Aligned_cols=203 Identities=19% Similarity=0.210 Sum_probs=134.7
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 240 GILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 240 ~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
.++++|++.....+..++++.+.++.+. +|++++|+.+|....... ..+.+..+++.+++.++. .++||+
T Consensus 113 ~p~~~Nl~~~~~~~~~~~~~~~~i~~~~--adalel~l~~~q~~~~~~--~~~df~~~~~~i~~l~~~------~~vPVi 182 (326)
T cd02811 113 GPLIANLGAVQLNGYGVEEARRAVEMIE--ADALAIHLNPLQEAVQPE--GDRDFRGWLERIEELVKA------LSVPVI 182 (326)
T ss_pred ceEEeecCccccCCCCHHHHHHHHHhcC--CCcEEEeCcchHhhcCCC--CCcCHHHHHHHHHHHHHh------cCCCEE
Confidence 4788999765322223457777888876 999999998765421111 111233333333333322 379999
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCc---cchHHHHHHHHHhcCCCcc
Q 012517 320 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLL---SLSNNILKEMYLLTRGKIP 396 (462)
Q Consensus 320 vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~---~~al~~v~~i~~~~~~~ip 396 (462)
||+...- ...+.++.+.+.|+|+|++++............... ...-.++.... ..+...+.++++.++ ++|
T Consensus 183 vK~~g~g---~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~-~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ip 257 (326)
T cd02811 183 VKEVGFG---ISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAK-DSDQRLAEYFADWGIPTAASLLEVRSALP-DLP 257 (326)
T ss_pred EEecCCC---CCHHHHHHHHHcCCCEEEECCCCCCccccccccccc-ccccccccccccccccHHHHHHHHHHHcC-CCc
Confidence 9998752 225788999999999999987421000000000000 00000011111 114567777877765 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEchhhhhc---CC----ChHHHHHHHHHHHHHHcCCCCHHHhh
Q 012517 397 LIGCGGISSGEDAYRKIRAGATLVQLYTAFAYG---GP----ALIPQIKAELAECLERDGFKSIIEAV 457 (462)
Q Consensus 397 IIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~---GP----~~i~~i~~~L~~~l~~~G~~si~e~~ 457 (462)
||++|||+++.|+.++|.+|||+||++|+|++. |+ .+++.++++|+.+|...|++|++|++
T Consensus 258 IiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~el~~~m~~~G~~si~el~ 325 (326)
T cd02811 258 LIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELRTAMFLTGAKNLAELK 325 (326)
T ss_pred EEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 999999999999999999999999999998653 44 38999999999999999999999986
No 34
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.86 E-value=1.1e-20 Score=191.48 Aligned_cols=172 Identities=19% Similarity=0.224 Sum_probs=141.7
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHccc-CcEEEEeccCCCCC------CcccccCchHHHHHHHHHHHHHHhhccCC
Q 012517 240 GILGVNIGKNKTSEDAAADYVQGVHTLSQY-ADYLVINVSSPNTP------GLRMLQGRKQLKDLVKKVQAARDEMQWGE 312 (462)
Q Consensus 240 ~~lgvnig~nk~t~~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~------glr~lq~~~~l~~ll~aV~~~~~~~~~~~ 312 (462)
.|+++||+.+ +++ +|+++++.+.++ +|+|+||++||+.. |...+++++.+.+++++++++.
T Consensus 55 ~p~~vQl~g~--~p~---~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~------- 122 (318)
T TIGR00742 55 SPVALQLGGS--DPN---DLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV------- 122 (318)
T ss_pred CcEEEEEccC--CHH---HHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh-------
Confidence 4799999886 666 888888888775 89999999999985 3334678899999999999874
Q ss_pred CCCCCEEEEecCCCCh----hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCc---CccchHHHHH
Q 012517 313 EGPPPLLVKIAPDLSK----EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKP---LLSLSNNILK 385 (462)
Q Consensus 313 ~~~~Pv~vKispdl~~----~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~---l~~~al~~v~ 385 (462)
++||.||++...++ ++..++++.+.+.|+|.|+++..|. ...|+||+. +.+..++.++
T Consensus 123 --~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~-------------~~qg~sg~~~~~~~~~~~~~i~ 187 (318)
T TIGR00742 123 --NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKA-------------WLSGLSPKENREIPPLRYERVY 187 (318)
T ss_pred --CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCch-------------hhcCCCccccccCCchhHHHHH
Confidence 68999999986543 4677899999999999999997762 123666654 4455678899
Q ss_pred HHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 386 EMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 386 ~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
++++.++ ++|||++|||.|++||.+++. |||.||++|+++. +|+++.++.+.+
T Consensus 188 ~vk~~~~-~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~-nP~if~~~~~~l 240 (318)
T TIGR00742 188 QLKKDFP-HLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE-NPYLLANVDREI 240 (318)
T ss_pred HHHHhCC-CCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh-CCHHHHHHHHHh
Confidence 9999875 699999999999999999996 9999999999976 799999886543
No 35
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.86 E-value=1.7e-19 Score=181.56 Aligned_cols=260 Identities=22% Similarity=0.301 Sum_probs=179.7
Q ss_pred CCChHHHHHHHHHHHhc-CCCCCC-CCCCCCCccEEEcCeeeCCcEEeCC-C-C---CCCH--HHHHHHHcCCccEEEec
Q 012517 96 LLDAEVAHTLAVSAAAR-GWVPRE-KRPDPAILGLEVWGRKFSNPLGLAA-G-F---DKNA--EAVEGLLGLGFGFVEVG 166 (462)
Q Consensus 96 ~~d~E~aH~~~~~~l~~-~~~p~~-~~~~~~~L~v~v~Gl~f~NPiglAA-G-~---dk~~--e~~~~l~~lGfG~Vevg 166 (462)
-.+.|.+++-....+.. .+.|+- ...++.|++++++|.+|..||++++ + . ..++ ...+...+.|..++. +
T Consensus 22 ~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~-~ 100 (299)
T cd02809 22 GAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTL-S 100 (299)
T ss_pred ccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEe-c
Confidence 34666666666666552 455543 2456889999999999999999997 2 2 3334 445556677765543 3
Q ss_pred ccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEe
Q 012517 167 SVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNI 246 (462)
Q Consensus 167 tvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvni 246 (462)
+.+ + ...+ .+++.. +.++++|+
T Consensus 101 ~~~------~----------------------~~~~----~i~~~~--------------------------~~~~~~ql 122 (299)
T cd02809 101 TVS------T----------------------TSLE----EVAAAA--------------------------PGPRWFQL 122 (299)
T ss_pred CCC------c----------------------CCHH----HHHHhc--------------------------CCCeEEEE
Confidence 221 0 0011 121110 12688888
Q ss_pred cCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCC
Q 012517 247 GKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDL 326 (462)
Q Consensus 247 g~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl 326 (462)
..+. +++...+.++.++.. .+|+|++|++||+.. .+ ...++++++++.. +.||++|.-.
T Consensus 123 ~~~~-~~~~~~~~i~~~~~~--g~~~i~l~~~~p~~~-~~------~~~~~i~~l~~~~---------~~pvivK~v~-- 181 (299)
T cd02809 123 YVPR-DREITEDLLRRAEAA--GYKALVLTVDTPVLG-RR------LTWDDLAWLRSQW---------KGPLILKGIL-- 181 (299)
T ss_pred eecC-CHHHHHHHHHHHHHc--CCCEEEEecCCCCCC-CC------CCHHHHHHHHHhc---------CCCEEEeecC--
Confidence 6532 344334444444433 399999999999853 23 2336677776653 6899999542
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH
Q 012517 327 SKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG 406 (462)
Q Consensus 327 ~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~ 406 (462)
+ .+.++.+.+.|+|+|+++|+. ++. ..+ | +.+++.+.++++.++.++|||++|||.++
T Consensus 182 s----~~~a~~a~~~G~d~I~v~~~g-G~~----------~~~---g----~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 239 (299)
T cd02809 182 T----PEDALRAVDAGADGIVVSNHG-GRQ----------LDG---A----PATIDALPEIVAAVGGRIEVLLDGGIRRG 239 (299)
T ss_pred C----HHHHHHHHHCCCCEEEEcCCC-CCC----------CCC---C----cCHHHHHHHHHHHhcCCCeEEEeCCCCCH
Confidence 2 355888999999999999865 221 011 2 23678889999888657999999999999
Q ss_pred HHHHHHHHhCCCEEEEchhhhhc----C----CChHHHHHHHHHHHHHHcCCCCHHHhh
Q 012517 407 EDAYRKIRAGATLVQLYTAFAYG----G----PALIPQIKAELAECLERDGFKSIIEAV 457 (462)
Q Consensus 407 ~dA~e~i~aGAd~Vqv~Tali~~----G----P~~i~~i~~~L~~~l~~~G~~si~e~~ 457 (462)
+|+.++|.+|||+||++|++++. | ..++..++++|+.+|...|++|++|+.
T Consensus 240 ~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 240 TDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 99999999999999999999873 1 248889999999999999999999985
No 36
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.86 E-value=4.7e-20 Score=189.65 Aligned_cols=279 Identities=18% Similarity=0.190 Sum_probs=190.8
Q ss_pred cEEEcCeeeCCcEEeCC-C--CC-------CCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCC
Q 012517 127 GLEVWGRKFSNPLGLAA-G--FD-------KNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGF 196 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA-G--~d-------k~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~ 196 (462)
|+++.+++++|+|++++ + .. ...+++.++++.|+|.|++|.+.+.+..+...|....+..|+ .+
T Consensus 4 Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~-~i----- 77 (361)
T cd04747 4 PFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGED-AL----- 77 (361)
T ss_pred CeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHH-HH-----
Confidence 57899999999999996 1 22 233466678889999999998877543222223444444343 45
Q ss_pred CchhHHHHHHHHHHhhccCcc--cccccCCCCC---CCc-ccCCCCCCCceEEEEecCCCCCHHH----HHHHHHHHHHH
Q 012517 197 NSEGIVAVAKRLGAQHGKRKL--DETSRTSSSP---NDE-VKAGGKAGPGILGVNIGKNKTSEDA----AADYVQGVHTL 266 (462)
Q Consensus 197 nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~---~~~-~p~~~~~~~~~lgvnig~nk~t~~~----~~dy~~~~~~l 266 (462)
+++..+++.+++...+... .|.++..... ..+ .|.++|..+.+. -.. ...+|.++ +++|+++++++
T Consensus 78 --~~~~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~-~~~-p~~mt~~eI~~ii~~f~~AA~~a 153 (361)
T cd04747 78 --AGWKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPG-KPV-GREMTEADIDDVIAAFARAAADA 153 (361)
T ss_pred --HHHHHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCC-CCC-CccCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999987665422 3333322110 001 121222111000 000 11345544 56999999999
Q ss_pred cc-cCcEEEEeccC---------CCCCCc-----ccccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC-----
Q 012517 267 SQ-YADYLVINVSS---------PNTPGL-----RMLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD----- 325 (462)
Q Consensus 267 ~~-~aD~leiNvSs---------Pnt~gl-----r~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd----- 325 (462)
.+ .+|+||||..| |.+|-. .+++++ +++.+++++|++++ +.++||.|||+++
T Consensus 154 ~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~v-------G~d~~v~vRis~~~~~~~ 226 (361)
T cd04747 154 RRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAV-------GPDFPIILRFSQWKQQDY 226 (361)
T ss_pred HHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHc-------CCCCeEEEEECccccccc
Confidence 87 59999998665 998722 146666 78999999999986 4578999999972
Q ss_pred -----CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe
Q 012517 326 -----LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC 400 (462)
Q Consensus 326 -----l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~ 400 (462)
.+.++..++++.+.+.|+|.|.++......+ . +.|. .....+.+++.+ ++||+++
T Consensus 227 ~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~----------~---~~~~-----~~~~~~~~k~~~--~~pv~~~ 286 (361)
T cd04747 227 TARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEP----------E---FEGS-----ELNLAGWTKKLT--GLPTITV 286 (361)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCC----------C---cCcc-----chhHHHHHHHHc--CCCEEEE
Confidence 3446778889999999999998865321110 0 1111 245567788888 6999999
Q ss_pred cCC------------------CCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHHH
Q 012517 401 GGI------------------SSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELAE 443 (462)
Q Consensus 401 GGI------------------~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~~ 443 (462)
||| .|++++.+.|+.| ||+|+++++++. +|+|+++++++..+
T Consensus 287 G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia-dP~~~~k~~~g~~~ 347 (361)
T cd04747 287 GSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS-DPAWVAKVREGRLD 347 (361)
T ss_pred CCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh-CcHHHHHHHcCCcc
Confidence 999 6999999999977 999999999987 79999999887654
No 37
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.86 E-value=1.2e-19 Score=186.31 Aligned_cols=274 Identities=20% Similarity=0.205 Sum_probs=174.2
Q ss_pred CCCCCCccEEEcCeeeCCcEEeCC--CCC-CC----HHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccc
Q 012517 120 RPDPAILGLEVWGRKFSNPLGLAA--GFD-KN----AEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIIN 192 (462)
Q Consensus 120 ~~~~~~L~v~v~Gl~f~NPiglAA--G~d-k~----~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN 192 (462)
..++.|++++++|.++..||.++| |-. .. .+......+.|... -+|+...
T Consensus 44 ~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~-~~Gs~~~---------------------- 100 (352)
T PRK05437 44 DLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAM-GVGSQRA---------------------- 100 (352)
T ss_pred ChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCe-EecccHh----------------------
Confidence 456889999999999999999886 322 22 23333344555443 2344310
Q ss_pred cCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcE
Q 012517 193 RCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADY 272 (462)
Q Consensus 193 ~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~ 272 (462)
++.++-...-.+.+++.. | +.|+++||+.........+++.+.++.+. +|+
T Consensus 101 --~~~~~~~~~~~~~vr~~~-------------------p------~~p~~aNl~~~~~~~~~~~~~~~~~~~~~--ada 151 (352)
T PRK05437 101 --ALKDPELADSFSVVRKVA-------------------P------DGLLFANLGAVQLYGYGVEEAQRAVEMIE--ADA 151 (352)
T ss_pred --hccChhhHHHHHHHHHHC-------------------C------CceEEeecCccccCCCCHHHHHHHHHhcC--CCc
Confidence 111121222223333221 1 24799999875332222346777777776 999
Q ss_pred EEEeccCCCCCCccc-ccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecC
Q 012517 273 LVINVSSPNTPGLRM-LQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNT 351 (462)
Q Consensus 273 leiNvSsPnt~glr~-lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNT 351 (462)
+++|+.||..-.... ..+-+.+.+.++++++.. ++||+||+...- ...+.++.+.+.|+|+|+++|.
T Consensus 152 l~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~---------~vPVivK~~g~g---~s~~~a~~l~~~Gvd~I~Vsg~ 219 (352)
T PRK05437 152 LQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL---------PVPVIVKEVGFG---ISKETAKRLADAGVKAIDVAGA 219 (352)
T ss_pred EEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh---------CCCEEEEeCCCC---CcHHHHHHHHHcCCCEEEECCC
Confidence 999998876521110 001122335555555442 799999998642 2257889999999999999985
Q ss_pred CccCCCCCCCCCcc--cccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhc
Q 012517 352 TISRPDPVSKNPVA--KETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYG 429 (462)
Q Consensus 352 t~~r~~~~~~~~~~--~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~ 429 (462)
.-............ .....+.+- -.+ +...+.++++... ++|||++|||.+++|+.++|.+|||+||++|++++.
T Consensus 220 GGt~~~~ie~~R~~~~~~~~~~~~~-g~p-t~~~l~~i~~~~~-~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 220 GGTSWAAIENYRARDDRLASYFADW-GIP-TAQSLLEARSLLP-DLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred CCCCccchhhhhhhccccccccccc-cCC-HHHHHHHHHHhcC-CCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 31100000000000 000011110 011 4567777887742 799999999999999999999999999999998764
Q ss_pred ----CCC----hHHHHHHHHHHHHHHcCCCCHHHhhccc
Q 012517 430 ----GPA----LIPQIKAELAECLERDGFKSIIEAVGAD 460 (462)
Q Consensus 430 ----GP~----~i~~i~~~L~~~l~~~G~~si~e~~G~~ 460 (462)
|+. ++.+++++|+.+|...|++|++|+.+..
T Consensus 297 ~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~ 335 (352)
T PRK05437 297 ALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVP 335 (352)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCC
Confidence 676 8999999999999999999999999864
No 38
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.86 E-value=1e-20 Score=191.18 Aligned_cols=168 Identities=16% Similarity=0.155 Sum_probs=138.6
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCC----CCc--ccccCchHHHHHHHHHHHHHHhhccCC
Q 012517 240 GILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVINVSSPNT----PGL--RMLQGRKQLKDLVKKVQAARDEMQWGE 312 (462)
Q Consensus 240 ~~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt----~gl--r~lq~~~~l~~ll~aV~~~~~~~~~~~ 312 (462)
.|+++||.+| +++ +|+++++++.+ .+|.|+||++||+. .|. ..+++++.+.+++++|+++.
T Consensus 63 ~p~~vQl~g~--~p~---~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~------- 130 (312)
T PRK10550 63 TLVRIQLLGQ--YPQ---WLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV------- 130 (312)
T ss_pred CcEEEEeccC--CHH---HHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhc-------
Confidence 4799999886 666 78888888876 49999999999984 232 24677899999999998864
Q ss_pred CCCCCEEEEecCCCCh-hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhc
Q 012517 313 EGPPPLLVKIAPDLSK-EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLT 391 (462)
Q Consensus 313 ~~~~Pv~vKispdl~~-~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~ 391 (462)
+.++||.||++.+.+. ++..++++.++++|+|.|+++..|. ..|++|++. ..+.++++++.+
T Consensus 131 ~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~--------------~~~y~g~~~---~~~~i~~ik~~~ 193 (312)
T PRK10550 131 PAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTK--------------EDGYRAEHI---NWQAIGEIRQRL 193 (312)
T ss_pred CCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCC--------------ccCCCCCcc---cHHHHHHHHhhc
Confidence 2258999999987653 4578999999999999999986541 247888764 357899999998
Q ss_pred CCCccEEEecCCCCHHHHHHHHH-hCCCEEEEchhhhhcCCChHHHHHH
Q 012517 392 RGKIPLIGCGGISSGEDAYRKIR-AGATLVQLYTAFAYGGPALIPQIKA 439 (462)
Q Consensus 392 ~~~ipIIg~GGI~s~~dA~e~i~-aGAd~Vqv~Tali~~GP~~i~~i~~ 439 (462)
++|||++|||.|++||.++++ .|||.||++|+++. +|+++++++.
T Consensus 194 --~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~-nP~lf~~~~~ 239 (312)
T PRK10550 194 --TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN-IPNLSRVVKY 239 (312)
T ss_pred --CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh-CcHHHHHhhc
Confidence 799999999999999999996 78999999999976 6999998754
No 39
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.86 E-value=5.4e-20 Score=189.26 Aligned_cols=282 Identities=18% Similarity=0.139 Sum_probs=194.9
Q ss_pred cEEEcCeeeCCcEEeCC---CCCC-------CHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCC
Q 012517 127 GLEVWGRKFSNPLGLAA---GFDK-------NAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGF 196 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA---G~dk-------~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~ 196 (462)
|+++.+++++|+|.+|+ ++.. .-+.+..+++.|+|.|++|.+.+.|. |...|+...+.+|+ .|
T Consensus 4 P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~-~~~~~~~~~~~~~~-~i----- 76 (353)
T cd02930 4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEA-GKLGPGGPVLNSPR-QA----- 76 (353)
T ss_pred CeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCc-ccCCCCCcccCCHH-HH-----
Confidence 67899999999999997 2321 22456668889999999998877664 44444444444333 55
Q ss_pred CchhHHHHHHHHHHhhccCcc--cccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHH----HHHHHHHHHHHcc-c
Q 012517 197 NSEGIVAVAKRLGAQHGKRKL--DETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDA----AADYVQGVHTLSQ-Y 269 (462)
Q Consensus 197 nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~----~~dy~~~~~~l~~-~ 269 (462)
+++..+++.+++...+... .|.+.... ...|.++|..+....-.. ...+|.++ +++|+++++++.+ .
T Consensus 77 --~~~~~l~~~vh~~g~~~~~QL~h~G~~~~---~~~~~~ps~~~~~~~~~~-p~~mt~~eI~~i~~~f~~aA~~a~~aG 150 (353)
T cd02930 77 --AGHRLITDAVHAEGGKIALQILHAGRYAY---HPLCVAPSAIRAPINPFT-PRELSEEEIEQTIEDFARCAALAREAG 150 (353)
T ss_pred --HHHHHHHHHHHHcCCEEEeeccCCCCCCC---CCCCcCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 8899999999987655422 33333211 112222332211110000 12355554 5699999998876 5
Q ss_pred CcEEEEec---------cCCCCCCc-----ccccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC------CCh
Q 012517 270 ADYLVINV---------SSPNTPGL-----RMLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD------LSK 328 (462)
Q Consensus 270 aD~leiNv---------SsPnt~gl-----r~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd------l~~ 328 (462)
+|+|||+. .||.++-. .+++++ +++.+++++|++++ +.++||.+||+++ .+.
T Consensus 151 fDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~v-------G~d~~v~iRi~~~D~~~~g~~~ 223 (353)
T cd02930 151 YDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAV-------GEDFIIIYRLSMLDLVEGGSTW 223 (353)
T ss_pred CCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHc-------CCCceEEEEecccccCCCCCCH
Confidence 99999964 59988721 135665 78899999999875 4578999999964 456
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHH
Q 012517 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGED 408 (462)
Q Consensus 329 ~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~d 408 (462)
++..++++.+++.|+|.|.++......+ ... ....+++ ...+...+++++.+ ++||+++|+|.++++
T Consensus 224 ~e~~~i~~~Le~~G~d~i~vs~g~~e~~--~~~------~~~~~~~---~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~ 290 (353)
T cd02930 224 EEVVALAKALEAAGADILNTGIGWHEAR--VPT------IATSVPR---GAFAWATAKLKRAV--DIPVIASNRINTPEV 290 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCC--Ccc------ccccCCc---hhhHHHHHHHHHhC--CCCEEEcCCCCCHHH
Confidence 7888999999999999999975432110 100 0011111 11356678899998 799999999999999
Q ss_pred HHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 409 AYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 409 A~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
+.++|+.| +|+|+++++++. +|+|+++++++..
T Consensus 291 a~~~i~~g~~D~V~~gR~~l~-dP~~~~k~~~g~~ 324 (353)
T cd02930 291 AERLLADGDADMVSMARPFLA-DPDFVAKAAAGRA 324 (353)
T ss_pred HHHHHHCCCCChhHhhHHHHH-CccHHHHHHhCCc
Confidence 99999987 999999999987 7999999998753
No 40
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.86 E-value=6.5e-20 Score=187.47 Aligned_cols=272 Identities=19% Similarity=0.184 Sum_probs=186.9
Q ss_pred cEEEcCeeeCCcEEeCC---CC-CCCHH-------HHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCC
Q 012517 127 GLEVWGRKFSNPLGLAA---GF-DKNAE-------AVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCG 195 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA---G~-dk~~e-------~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G 195 (462)
|+++.+++++|+|.+++ ++ +++|. .+..+++ | |.|++|.+.+.|. |...|....+.+|+ .|
T Consensus 5 P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~-g-glIi~~~~~v~~~-g~~~~~~~~l~~d~-~i---- 76 (338)
T cd02933 5 PLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRAS-A-GLIITEATQISPQ-GQGYPNTPGIYTDE-QV---- 76 (338)
T ss_pred CceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhc-C-ceEEeCceeeCcc-ccCCCCCCccCCHH-HH----
Confidence 67899999999999997 23 34442 3444554 5 9999998887764 44444433444333 44
Q ss_pred CCchhHHHHHHHHHHhhccCcc--cccccCCCCCC---CcccCCCCCCCceEEE------Ee--cCCCCCHHH----HHH
Q 012517 196 FNSEGIVAVAKRLGAQHGKRKL--DETSRTSSSPN---DEVKAGGKAGPGILGV------NI--GKNKTSEDA----AAD 258 (462)
Q Consensus 196 ~nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~---~~~p~~~~~~~~~lgv------ni--g~nk~t~~~----~~d 258 (462)
+|+..+++.+++...+... .|.+....... ...|.++|..+..... .- ....+|.++ +++
T Consensus 77 ---~~lr~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~ 153 (338)
T cd02933 77 ---EGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVAD 153 (338)
T ss_pred ---HHHHHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHH
Confidence 8899999999987665432 33333211100 1112222222111100 00 012345544 579
Q ss_pred HHHHHHHHcc-cCcEEEEeccC---------CCCCCc-----ccccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEe
Q 012517 259 YVQGVHTLSQ-YADYLVINVSS---------PNTPGL-----RMLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322 (462)
Q Consensus 259 y~~~~~~l~~-~aD~leiNvSs---------Pnt~gl-----r~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi 322 (462)
|+++++++.+ .+|+||||..| |.+|-. .++.++ +++.+++++|++++ +.+ ||.|||
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~v-------g~d-~v~vRi 225 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAI-------GAD-RVGIRL 225 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHh-------CCC-ceEEEE
Confidence 9999999987 59999998666 988722 236666 78999999999876 234 799999
Q ss_pred cCC---------CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC
Q 012517 323 APD---------LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG 393 (462)
Q Consensus 323 spd---------l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~ 393 (462)
+++ .+.++..++++.+.+.|+|.|.++...... . .. ...++.++++++.+
T Consensus 226 s~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~-~----------~~--------~~~~~~~~~ik~~~-- 284 (338)
T cd02933 226 SPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAG-N----------PE--------DQPPDFLDFLRKAF-- 284 (338)
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCC-c----------cc--------ccchHHHHHHHHHc--
Confidence 975 245778899999999999999986543211 0 01 12467788999998
Q ss_pred CccEEEecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHH
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
++|||++|||+ +++|.++|+.| ||+|+++++++. +|+|+++++++
T Consensus 285 ~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la-dP~~~~k~~~g 330 (338)
T cd02933 285 KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA-NPDLVERLKNG 330 (338)
T ss_pred CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh-CcCHHHHHhcC
Confidence 79999999997 99999999987 999999999987 79999999764
No 41
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.86 E-value=1.1e-20 Score=193.38 Aligned_cols=286 Identities=21% Similarity=0.255 Sum_probs=190.7
Q ss_pred cEEEcCeeeCCcEEeCC---CC-CCCH--------HHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccC
Q 012517 127 GLEVWGRKFSNPLGLAA---GF-DKNA--------EAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRC 194 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA---G~-dk~~--------e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~ 194 (462)
|.++.+++|+|+|.+|+ ++ +.++ +.+.++++.|+|.|++|.+.+.|. +...|....+.+|+ .|
T Consensus 5 P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~-~~~~~~~~~i~~d~-~i--- 79 (341)
T PF00724_consen 5 PLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPE-GRGFPGQPGIWDDE-QI--- 79 (341)
T ss_dssp -EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGG-GSSSTTSEBSSSHH-HH---
T ss_pred CeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccc-cccccccchhchhh-HH---
Confidence 67899999999999997 23 4444 356678899999999999888774 33555555555443 45
Q ss_pred CCCchhHHHHHHHHHHhhccCcc--cccccCCCCCCCcc-cCCCC---CCCce---EEEEecCCCCCHHH----HHHHHH
Q 012517 195 GFNSEGIVAVAKRLGAQHGKRKL--DETSRTSSSPNDEV-KAGGK---AGPGI---LGVNIGKNKTSEDA----AADYVQ 261 (462)
Q Consensus 195 G~nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~-p~~~~---~~~~~---lgvnig~nk~t~~~----~~dy~~ 261 (462)
+++..+++.+++...+... .|.++......... +.++| ..+.. .+.-. ..+|.++ +++|++
T Consensus 80 ----~~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~--~~mt~~eI~~ii~~f~~ 153 (341)
T PF00724_consen 80 ----PGLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPP--REMTEEEIEEIIEDFAQ 153 (341)
T ss_dssp ----HHHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEE--EE--HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCC--eeCCHHHHHHHHHHHHH
Confidence 8999999999987765432 34433322111111 10111 00000 00000 1245544 579999
Q ss_pred HHHHHcc-cCcEEEEe---------ccCCCCCCcc-----cccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC
Q 012517 262 GVHTLSQ-YADYLVIN---------VSSPNTPGLR-----MLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD 325 (462)
Q Consensus 262 ~~~~l~~-~aD~leiN---------vSsPnt~glr-----~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd 325 (462)
+++++.+ .+|+|||+ |.||.+|-.. +++|| +++.+++++|++++ +.+.||.+|||++
T Consensus 154 AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~v-------g~d~~v~~Rls~~ 226 (341)
T PF00724_consen 154 AARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAV-------GPDFPVGVRLSPD 226 (341)
T ss_dssp HHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHH-------TGGGEEEEEEETT
T ss_pred HHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHh-------cCCceEEEEEeee
Confidence 9999987 49999995 8899998321 46777 78999999999987 4578999999997
Q ss_pred CC------hhhHHHHHHHHHHcCCcEEEEecCCccCC-CCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE
Q 012517 326 LS------KEDLEDIAAVAVALRLDGLIISNTTISRP-DPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 326 l~------~~~~~~ia~~~~~~GvdgIivsNTt~~r~-~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII 398 (462)
.. .++..++++.+.+.|+|.+.+++...... ...... ..... ....+.....+++.+ ++|||
T Consensus 227 ~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~a~~ik~~~--~~pvi 295 (341)
T PF00724_consen 227 DFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSP-----PFDFE----PGYNLDLAEAIKKAV--KIPVI 295 (341)
T ss_dssp CSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTT-----TTTTT----TTTTHHHHHHHHHHH--SSEEE
T ss_pred cccCCCCchHHHHHHHHHHHHHhhhhcccccccccccccccccc-----ccccc----cchhhhhhhhhhhhc--CceEE
Confidence 32 35667789999999999887664432110 000000 00100 112456778889988 79999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 399 GCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
++|||.+++.|.+.|..| ||+|.++++++. +|+|++|++++..
T Consensus 296 ~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la-dPd~~~k~~~g~~ 339 (341)
T PF00724_consen 296 GVGGIRTPEQAEKALEEGKADLVAMGRPLLA-DPDLPNKAREGRE 339 (341)
T ss_dssp EESSTTHHHHHHHHHHTTSTSEEEESHHHHH--TTHHHHHHHTTG
T ss_pred EEeeecchhhhHHHHhcCCceEeeccHHHHh-CchHHHHHHcCCc
Confidence 999999999999999988 999999999998 7999999998643
No 42
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.85 E-value=3.3e-20 Score=189.33 Aligned_cols=172 Identities=20% Similarity=0.242 Sum_probs=137.3
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHccc-CcEEEEeccCCCCC------CcccccCchHHHHHHHHHHHHHHhhccCC
Q 012517 240 GILGVNIGKNKTSEDAAADYVQGVHTLSQY-ADYLVINVSSPNTP------GLRMLQGRKQLKDLVKKVQAARDEMQWGE 312 (462)
Q Consensus 240 ~~lgvnig~nk~t~~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~------glr~lq~~~~l~~ll~aV~~~~~~~~~~~ 312 (462)
.++++||+++ +++ +|+++++.+.++ +|.|+||++||+.+ |...+++++.+.+++++++++.
T Consensus 65 ~p~~vQl~g~--~p~---~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v------- 132 (333)
T PRK11815 65 HPVALQLGGS--DPA---DLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV------- 132 (333)
T ss_pred CcEEEEEeCC--CHH---HHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc-------
Confidence 3799999886 666 888999888874 89999999999874 2223577899999999998764
Q ss_pred CCCCCEEEEecCCCC----hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCC---cCccchHHHHH
Q 012517 313 EGPPPLLVKIAPDLS----KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGK---PLLSLSNNILK 385 (462)
Q Consensus 313 ~~~~Pv~vKispdl~----~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~---~l~~~al~~v~ 385 (462)
++||.||++...+ .++..++++.+.++|+|+|+++..+.. ..|++|+ .+.+..++.++
T Consensus 133 --~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~-------------~~g~~~~~~~~~~~~~~~~i~ 197 (333)
T PRK11815 133 --SIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAW-------------LKGLSPKENREIPPLDYDRVY 197 (333)
T ss_pred --CCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchh-------------hcCCCccccccCCCcCHHHHH
Confidence 6899999976543 246789999999999999999854310 1244433 33455688899
Q ss_pred HHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 386 EMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 386 ~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
++++.+. ++|||++|||.|++|+.++++ |||.||++++++. +|++++++++.+
T Consensus 198 ~v~~~~~-~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~-nP~~~~~~~~~~ 250 (333)
T PRK11815 198 RLKRDFP-HLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYH-NPYLLAEVDREL 250 (333)
T ss_pred HHHHhCC-CCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHh-CCHHHHHHHHHh
Confidence 9998754 699999999999999999997 7999999999975 899999987533
No 43
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.84 E-value=5e-19 Score=183.11 Aligned_cols=284 Identities=15% Similarity=0.158 Sum_probs=189.9
Q ss_pred cEEEcCeeeCCcEEeCC-C--C--CCCH---HHHHHHHcCCccEEEecccccCCCCCCCCCc-eeeecCCCcccccCCCC
Q 012517 127 GLEVWGRKFSNPLGLAA-G--F--DKNA---EAVEGLLGLGFGFVEVGSVTPVPQEGNPKPR-IFRLRQEGAIINRCGFN 197 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA-G--~--dk~~---e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR-~frl~~d~a~iN~~G~n 197 (462)
|.++.+++|+|+|.+|+ + . +..- +.....++.|+|.|+++.+.+.+. |...|+ ...+.+|+ .+
T Consensus 11 P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~-~~~~~~~~~~l~~d~-~i------ 82 (370)
T cd02929 11 PIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPS-SDDTPRISARLWDDG-DI------ 82 (370)
T ss_pred CccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccc-cccCcccCcCcCCHH-HH------
Confidence 67789999999999998 2 1 1111 233456788999999998887764 333333 23344333 45
Q ss_pred chhHHHHHHHHHHhhccCc--ccccccCCCCCCC-cccCCCCCCCceE--EEEecCCCCCHHH----HHHHHHHHHHHcc
Q 012517 198 SEGIVAVAKRLGAQHGKRK--LDETSRTSSSPND-EVKAGGKAGPGIL--GVNIGKNKTSEDA----AADYVQGVHTLSQ 268 (462)
Q Consensus 198 n~G~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~-~~p~~~~~~~~~l--gvnig~nk~t~~~----~~dy~~~~~~l~~ 268 (462)
+|+..+++.+++...+.. +.|.++....... ..|.++|..+... .-......+|.++ +++|+++++++.+
T Consensus 83 -~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~ 161 (370)
T cd02929 83 -RNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARD 161 (370)
T ss_pred -HHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998765432 2333332211111 1122223211110 0000012356554 5799999999987
Q ss_pred -cCcEEEEeccC---------CCCCCc-----ccccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCC------
Q 012517 269 -YADYLVINVSS---------PNTPGL-----RMLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDL------ 326 (462)
Q Consensus 269 -~aD~leiNvSs---------Pnt~gl-----r~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl------ 326 (462)
.+|+||||..| |.+|-. .+++++ +++.+++++|++++ +.++||.+||+++.
T Consensus 162 aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~v-------g~~~~v~vRls~~~~~~~~g 234 (370)
T cd02929 162 AGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAV-------GDDCAVATRFSVDELIGPGG 234 (370)
T ss_pred cCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHc-------CCCceEEEEecHHHhcCCCC
Confidence 49999998665 988622 246666 88999999999886 35789999999752
Q ss_pred --ChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC
Q 012517 327 --SKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS 404 (462)
Q Consensus 327 --~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~ 404 (462)
+.++..++++.+++. +|.+.++-....... ..... ...| ..+..++++++.+ ++|||++|||.
T Consensus 235 ~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~---~~~~~-~~~~--------~~~~~~~~ik~~~--~~pvi~~G~i~ 299 (370)
T cd02929 235 IESEGEGVEFVEMLDEL-PDLWDVNVGDWANDG---EDSRF-YPEG--------HQEPYIKFVKQVT--SKPVVGVGRFT 299 (370)
T ss_pred CCCHHHHHHHHHHHHhh-CCEEEecCCCccccc---ccccc-CCcc--------ccHHHHHHHHHHC--CCCEEEeCCCC
Confidence 356777888888765 799888754322110 00000 0111 1356778899988 79999999999
Q ss_pred CHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 405 SGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 405 s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
+++++.++|+.| ||+|+++++++. +|+|+++++++..
T Consensus 300 ~~~~~~~~l~~g~~D~V~~gR~~la-dP~l~~k~~~g~~ 337 (370)
T cd02929 300 SPDKMVEVVKSGILDLIGAARPSIA-DPFLPKKIREGRI 337 (370)
T ss_pred CHHHHHHHHHcCCCCeeeechHhhh-CchHHHHHHcCCc
Confidence 999999999988 999999999987 7999999998753
No 44
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.4e-19 Score=180.96 Aligned_cols=225 Identities=24% Similarity=0.274 Sum_probs=171.9
Q ss_pred EEcCeeeCCcEEeCC--CC-CCCHHHHHHHHcCCc-cEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHH
Q 012517 129 EVWGRKFSNPLGLAA--GF-DKNAEAVEGLLGLGF-GFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAV 204 (462)
Q Consensus 129 ~v~Gl~f~NPiglAA--G~-dk~~e~~~~l~~lGf-G~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~ 204 (462)
+++.+.++|++.||+ |+ |.....+ +.++|. +.+.+.-|+..+...+++.+...++..
T Consensus 3 ~~~~~~~~~~~~lAPM~gvtd~~fR~l--~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~----------------- 63 (323)
T COG0042 3 KIGLIELRNRVILAPMAGVTDLPFRRL--ARELGAYDLLYTEMVSAKALLHGRKKFLLLLDEL----------------- 63 (323)
T ss_pred ccccccccCcEEEecCCCCccHHHHHH--HHHhCCCceEEEccEEEhhhccCCcchhhhcCcC-----------------
Confidence 466788999999997 65 4333322 333476 888888888766544433333322110
Q ss_pred HHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHccc-CcEEEEeccCCCCC
Q 012517 205 AKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQY-ADYLVINVSSPNTP 283 (462)
Q Consensus 205 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~ 283 (462)
. ...|+.|||+.+ +++ .+.++++.+.+. +|.|+||+.||...
T Consensus 64 --------~------------------------~e~p~~vQl~gs--dp~---~l~eaA~~~~~~g~~~IdlN~GCP~~~ 106 (323)
T COG0042 64 --------E------------------------EERPVAVQLGGS--DPE---LLAEAAKIAEELGADIIDLNCGCPSPK 106 (323)
T ss_pred --------C------------------------CCCCEEEEecCC--CHH---HHHHHHHHHHhcCCCEEeeeCCCChHH
Confidence 0 013699999986 565 666666666654 79999999999864
Q ss_pred ------CcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhh--HHHHHHHHHHcCCcEEEEecCCccC
Q 012517 284 ------GLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKED--LEDIAAVAVALRLDGLIISNTTISR 355 (462)
Q Consensus 284 ------glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~--~~~ia~~~~~~GvdgIivsNTt~~r 355 (462)
|-..|++++.+.+++++++++. + ++||.||+.-..++++ ..++++.+++.|++.|+|+..|..
T Consensus 107 V~~~g~Ga~Ll~~p~lv~~iv~a~~~av-------~-~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~- 177 (323)
T COG0042 107 VVKGGAGAALLKNPELLAEIVKAMVEAV-------G-DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRA- 177 (323)
T ss_pred hcCCCcchhhcCCHHHHHHHHHHHHHhh-------C-CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHH-
Confidence 3345889999999999999885 1 5999999999887766 778999999999999999987631
Q ss_pred CCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH-hCCCEEEEchhhhhcCCChH
Q 012517 356 PDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR-AGATLVQLYTAFAYGGPALI 434 (462)
Q Consensus 356 ~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~-aGAd~Vqv~Tali~~GP~~i 434 (462)
.+++|+ ...+.|+++++.++. +|||++|+|.|++||.++++ .|+|.||++++.+ ++|+++
T Consensus 178 -------------~~y~~~----ad~~~I~~vk~~~~~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~-~nP~l~ 238 (323)
T COG0042 178 -------------QGYLGP----ADWDYIKELKEAVPS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGAL-GNPWLF 238 (323)
T ss_pred -------------hcCCCc----cCHHHHHHHHHhCCC-CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHc-cCCcHH
Confidence 244554 467999999999953 99999999999999999998 6799999999995 579998
Q ss_pred HHH
Q 012517 435 PQI 437 (462)
Q Consensus 435 ~~i 437 (462)
.++
T Consensus 239 ~~i 241 (323)
T COG0042 239 RQI 241 (323)
T ss_pred HHH
Confidence 875
No 45
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.82 E-value=4.1e-19 Score=171.31 Aligned_cols=166 Identities=23% Similarity=0.284 Sum_probs=134.2
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCC------cccccCchHHHHHHHHHHHHHHhhccCC
Q 012517 240 GILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPG------LRMLQGRKQLKDLVKKVQAARDEMQWGE 312 (462)
Q Consensus 240 ~~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~g------lr~lq~~~~l~~ll~aV~~~~~~~~~~~ 312 (462)
.++.+||+.+ +++ +|.++++++.+ .+|.|+||++||+++- ...+.+++.+.+++++|+++.
T Consensus 55 ~p~~~qi~g~--~~~---~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~------- 122 (231)
T cd02801 55 RPLIVQLGGS--DPE---TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV------- 122 (231)
T ss_pred CCEEEEEcCC--CHH---HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-------
Confidence 3799999875 555 88888888887 6999999999998741 112345688999999998763
Q ss_pred CCCCCEEEEecCCCChh-hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhc
Q 012517 313 EGPPPLLVKIAPDLSKE-DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLT 391 (462)
Q Consensus 313 ~~~~Pv~vKispdl~~~-~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~ 391 (462)
..|+.||++...+.+ +..++++.+.+.|+|+|+++..+.. +++++ +..++.++++++.+
T Consensus 123 --~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~--------------~~~~~----~~~~~~~~~i~~~~ 182 (231)
T cd02801 123 --PIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTRE--------------QRYSG----PADWDYIAEIKEAV 182 (231)
T ss_pred --CCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHH--------------HcCCC----CCCHHHHHHHHhCC
Confidence 489999998766554 8899999999999999999765421 01222 22568889999987
Q ss_pred CCCccEEEecCCCCHHHHHHHHHh-CCCEEEEchhhhhcCCChHHHHHHH
Q 012517 392 RGKIPLIGCGGISSGEDAYRKIRA-GATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 392 ~~~ipIIg~GGI~s~~dA~e~i~a-GAd~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
++|||++|||.+++|+.++++. |||+||++|+++. +|++++++++.
T Consensus 183 --~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~-~P~~~~~~~~~ 229 (231)
T cd02801 183 --SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG-NPWLFREIKEL 229 (231)
T ss_pred --CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh-CCHHHHhhhhc
Confidence 7999999999999999999998 8999999999975 79999998764
No 46
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.81 E-value=3.2e-18 Score=176.54 Aligned_cols=272 Identities=15% Similarity=0.133 Sum_probs=185.3
Q ss_pred cEEEcCeeeCCcEEeCC-C-C--C-CCH---H----HHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccC
Q 012517 127 GLEVWGRKFSNPLGLAA-G-F--D-KNA---E----AVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRC 194 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA-G-~--d-k~~---e----~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~ 194 (462)
|+++.+++|+|+|.+|+ . + + .++ + .+.+++ |+|.|++|.+.+.|. |...|....+..|+ .+
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA--g~GLIi~e~~~v~~~-~~~~~~~~~l~~d~-~i--- 78 (362)
T PRK10605 6 PLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA--SAGLIISEATQISAQ-AKGYAGAPGLHSPE-QI--- 78 (362)
T ss_pred CeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHh--CCCEEEECceeeCcc-cccCCCCCcccCHH-HH---
Confidence 67899999999999997 2 1 1 221 1 233333 899999999888764 44444444443333 44
Q ss_pred CCCchhHHHHHHHHHHhhccCcc--cccccCCCCC-C--CcccCCCCCCCceEE----------EEecC---CCCCHHH-
Q 012517 195 GFNSEGIVAVAKRLGAQHGKRKL--DETSRTSSSP-N--DEVKAGGKAGPGILG----------VNIGK---NKTSEDA- 255 (462)
Q Consensus 195 G~nn~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~-~--~~~p~~~~~~~~~lg----------vnig~---nk~t~~~- 255 (462)
+++..+++.+++...+... .|.++..... . ...+.++|..+.... ..... ..+|.++
T Consensus 79 ----~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI 154 (362)
T PRK10605 79 ----AAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEI 154 (362)
T ss_pred ----HHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHH
Confidence 8889999999987665432 3333322110 0 011222332211000 00001 1345444
Q ss_pred ---HHHHHHHHHHHcc-cCcEEEEe---------ccCCCCCCcc-----cccCc-hHHHHHHHHHHHHHHhhccCCCCCC
Q 012517 256 ---AADYVQGVHTLSQ-YADYLVIN---------VSSPNTPGLR-----MLQGR-KQLKDLVKKVQAARDEMQWGEEGPP 316 (462)
Q Consensus 256 ---~~dy~~~~~~l~~-~aD~leiN---------vSsPnt~glr-----~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~ 316 (462)
+++|+++++++.+ .+|+|||+ |.||.+|-.. +++|| +++.|++++|++++ +.+
T Consensus 155 ~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~v-------g~~- 226 (362)
T PRK10605 155 PGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEW-------GAD- 226 (362)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHc-------CCC-
Confidence 5799999999987 59999994 9999998321 46777 88999999999986 234
Q ss_pred CEEEEecCC---------CChhh-HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHH
Q 012517 317 PLLVKIAPD---------LSKED-LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKE 386 (462)
Q Consensus 317 Pv~vKispd---------l~~~~-~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~ 386 (462)
+|.+||+++ .+.+| ..++++.+.+.|+|.|.++.... .+ +. +......++
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~--------------~~---~~---~~~~~~~~~ 286 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW--------------AG---GE---PYSDAFREK 286 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccc--------------cC---Cc---cccHHHHHH
Confidence 599999984 24456 68999999999999999874310 00 01 113456678
Q ss_pred HHHhcCCCccEEEecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHH
Q 012517 387 MYLLTRGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 387 i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
+++.+ ++||+++|++ ++++|.+.|+.| ||+|.++++++. +|+|+++++++.
T Consensus 287 ik~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia-dPd~~~k~~~g~ 338 (362)
T PRK10605 287 VRARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA-NPDLVARLQRKA 338 (362)
T ss_pred HHHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh-CccHHHHHhcCC
Confidence 89888 6899999997 899999999998 999999999997 799999998864
No 47
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.81 E-value=1.9e-18 Score=194.03 Aligned_cols=281 Identities=20% Similarity=0.237 Sum_probs=189.2
Q ss_pred cEEEcCeeeCCcEEeCC-C-C-CCCH-------HHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCC
Q 012517 127 GLEVWGRKFSNPLGLAA-G-F-DKNA-------EAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGF 196 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA-G-~-dk~~-------e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~ 196 (462)
|+++.|++|+|+|.+++ . + ..+| ..+..+++.|+|.|+++.+.+.|. |...|....+.+|+ .|
T Consensus 402 P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~-g~~~~~~~~~~~d~-~i----- 474 (765)
T PRK08255 402 PFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPE-GRITPGCPGLYNDE-QE----- 474 (765)
T ss_pred ccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCC-cCCCCCCCccCCHH-HH-----
Confidence 78999999999999987 1 1 2233 356678889999999998877764 44434433343333 34
Q ss_pred CchhHHHHHHHHHHh-hccCc--ccccccCCCCCC----------C-c-ccCCCCCCCceEEEEecCCCCCHHH----HH
Q 012517 197 NSEGIVAVAKRLGAQ-HGKRK--LDETSRTSSSPN----------D-E-VKAGGKAGPGILGVNIGKNKTSEDA----AA 257 (462)
Q Consensus 197 nn~G~~~~~~~l~~~-~~~~~--~~~~~~~~~~~~----------~-~-~p~~~~~~~~~lgvnig~nk~t~~~----~~ 257 (462)
+++..+++.+++. ..+.. +.|.++...... . + .+.++|..+....-... ..+|.++ ++
T Consensus 475 --~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p-~~mt~~eI~~~i~ 551 (765)
T PRK08255 475 --AAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVP-REMTRADMDRVRD 551 (765)
T ss_pred --HHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCC-CcCCHHHHHHHHH
Confidence 7888999999886 34432 233333221100 0 0 11222211100000000 1345444 56
Q ss_pred HHHHHHHHHcc-cCcEEEEecc---------CCCCCCc-----ccccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 012517 258 DYVQGVHTLSQ-YADYLVINVS---------SPNTPGL-----RMLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLVK 321 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvS---------sPnt~gl-----r~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vK 321 (462)
+|+++++++.+ .+|+||||.. ||.+|-. .+++++ +++.+++++|++++ +.++||.+|
T Consensus 552 ~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~-------~~~~~v~~r 624 (765)
T PRK08255 552 DFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVW-------PAEKPMSVR 624 (765)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhc-------CCCCeeEEE
Confidence 99999999876 4999999977 9998722 246666 78999999999876 357899999
Q ss_pred ecCC------CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 322 IAPD------LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 322 ispd------l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
|+++ ++.++..++++.+++.|+|.|.++........ . + .. ++ .......+++++.+ ++
T Consensus 625 i~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~---~-~---~~----~~---~~~~~~~~~ik~~~--~~ 688 (765)
T PRK08255 625 ISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDE---K-P---VY----GR---MYQTPFADRIRNEA--GI 688 (765)
T ss_pred EccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCC---C-C---Cc----Cc---cccHHHHHHHHHHc--CC
Confidence 9973 34567889999999999999999854221100 0 0 00 00 01245567888888 79
Q ss_pred cEEEecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHH
Q 012517 396 PLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 396 pIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
|||++|+|++++++.+.|+.| ||+|+++++++. +|+|+.+...++
T Consensus 689 pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~-dP~~~~~~~~~~ 734 (765)
T PRK08255 689 ATIAVGAISEADHVNSIIAAGRADLCALARPHLA-DPAWTLHEAAEI 734 (765)
T ss_pred EEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh-CccHHHHHHHHc
Confidence 999999999999999999977 999999999987 799988776544
No 48
>PLN02411 12-oxophytodienoate reductase
Probab=99.79 E-value=1.4e-17 Score=173.45 Aligned_cols=283 Identities=16% Similarity=0.124 Sum_probs=184.1
Q ss_pred cEEEcCeeeCCcEEeCC---CCCCC-------HHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCC
Q 012517 127 GLEVWGRKFSNPLGLAA---GFDKN-------AEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGF 196 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAA---G~dk~-------~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~ 196 (462)
|+++.+++++|+|.+|+ ....+ .+.+.++++.| |.|+++.+.+.|. |...|+...+..|+ .|
T Consensus 15 P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~-g~~~~~~~gi~~d~-~i----- 86 (391)
T PLN02411 15 PYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPT-APGFPHVPGIYSDE-QV----- 86 (391)
T ss_pred CeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcc-cCcCCCCCccCCHH-HH-----
Confidence 78899999999999997 22222 34666677777 9999998888764 33344444444333 45
Q ss_pred CchhHHHHHHHHHHhhccCc--ccccccCCCCC-C--CcccCCCCCCCc--------eEEEEec---CCCCCHHH----H
Q 012517 197 NSEGIVAVAKRLGAQHGKRK--LDETSRTSSSP-N--DEVKAGGKAGPG--------ILGVNIG---KNKTSEDA----A 256 (462)
Q Consensus 197 nn~G~~~~~~~l~~~~~~~~--~~~~~~~~~~~-~--~~~p~~~~~~~~--------~lgvnig---~nk~t~~~----~ 256 (462)
+|+..+++.+++...+.. +.|.++..... . ...|.+++..+. +-+.... .-.+|.++ +
T Consensus 87 --~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii 164 (391)
T PLN02411 87 --EAWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVV 164 (391)
T ss_pred --HHHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHH
Confidence 889999999998766543 23433322110 0 011211111100 0000000 01345444 5
Q ss_pred HHHHHHHHHHcc-cCcEEEEe---------ccCCCCCCcc-----cccCc-hHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 257 ADYVQGVHTLSQ-YADYLVIN---------VSSPNTPGLR-----MLQGR-KQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 257 ~dy~~~~~~l~~-~aD~leiN---------vSsPnt~glr-----~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
++|+++++++.+ .+|+|||+ |.||.+|-.. +++|| +++.|++++|++++ +.+ .|.|
T Consensus 165 ~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~v-------g~d-~vgv 236 (391)
T PLN02411 165 EHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAI-------GAD-RVGV 236 (391)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHc-------CCC-eEEE
Confidence 799999999987 59999994 8999987221 46777 88999999999986 234 4999
Q ss_pred EecCCCC---------hhhHHHHHHHHHHc------CCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHH
Q 012517 321 KIAPDLS---------KEDLEDIAAVAVAL------RLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILK 385 (462)
Q Consensus 321 Kispdl~---------~~~~~~ia~~~~~~------GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~ 385 (462)
||||+.+ .++...+++.+.+. |+|.|.++....... ....+. .. +..+ ......+
T Consensus 237 RiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~--~~~~~~--~~-~~~~-----~~~~~a~ 306 (391)
T PLN02411 237 RVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAY--GQTESG--RH-GSEE-----EEAQLMR 306 (391)
T ss_pred EEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCccccc--CCCccc--cc-CCcc-----chhHHHH
Confidence 9998421 23445667776653 599998886532100 000000 00 0000 1124567
Q ss_pred HHHHhcCCCccEEEecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHH
Q 012517 386 EMYLLTRGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 386 ~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
++++.+ ++|||++||| +.++|.+.|+.| ||+|.++++++. +|+|++|++++.
T Consensus 307 ~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia-dPdl~~k~~~g~ 359 (391)
T PLN02411 307 TLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS-NPDLVLRFKLNA 359 (391)
T ss_pred HHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh-CccHHHHHhcCC
Confidence 889988 6899999999 579999999999 999999999997 799999998864
No 49
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.79 E-value=7.9e-17 Score=164.76 Aligned_cols=269 Identities=18% Similarity=0.187 Sum_probs=171.8
Q ss_pred ChHHHHHHHHHHHh-cCCCCCC-CCCCCCCccEEEcCeeeCCcEEeCC-C----CCCCHH--HHHHHHcCCccEEEeccc
Q 012517 98 DAEVAHTLAVSAAA-RGWVPRE-KRPDPAILGLEVWGRKFSNPLGLAA-G----FDKNAE--AVEGLLGLGFGFVEVGSV 168 (462)
Q Consensus 98 d~E~aH~~~~~~l~-~~~~p~~-~~~~~~~L~v~v~Gl~f~NPiglAA-G----~dk~~e--~~~~l~~lGfG~Vevgtv 168 (462)
+-|..++--..++. ..+.|+- +..++.+++++++|.+++-||++|+ | +..++| ..+...+.|..++. +|.
T Consensus 24 ~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~l-ss~ 102 (344)
T cd02922 24 DDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMI-STN 102 (344)
T ss_pred chHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEe-cCc
Confidence 44555555555555 3567764 4557889999999999999999997 4 355664 44556677766653 332
Q ss_pred ccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecC
Q 012517 169 TPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGK 248 (462)
Q Consensus 169 T~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~ 248 (462)
+. ..++.+.+ ... | ..++..|+-.
T Consensus 103 s~----------------------------~s~e~v~~----~~~------------------~------~~~~w~Qly~ 126 (344)
T cd02922 103 AS----------------------------CSLEEIVD----ARP------------------P------DQPLFFQLYV 126 (344)
T ss_pred cc----------------------------CCHHHHHH----hcC------------------C------CCcEEEEEee
Confidence 21 11222211 000 0 0134455543
Q ss_pred CCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCC-ccc-------------------------------ccCchHHHH
Q 012517 249 NKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPG-LRM-------------------------------LQGRKQLKD 296 (462)
Q Consensus 249 nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~g-lr~-------------------------------lq~~~~l~~ 296 (462)
.+ +.+..++.++.++.++ ++.|++.+-+|.... .|+ ..++...-+
T Consensus 127 ~~-d~~~~~~l~~ra~~ag--~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (344)
T cd02922 127 NK-DRTKTEELLKRAEKLG--AKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWD 203 (344)
T ss_pred cC-CHHHHHHHHHHHHHcC--CCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHH
Confidence 22 3344455666655555 777777776663310 000 001112234
Q ss_pred HHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcC
Q 012517 297 LVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPL 376 (462)
Q Consensus 297 ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l 376 (462)
.++++++. .+.||+||-- . ..+.++.+.+.|+|+|+++|+. ++.. .+. .+++
T Consensus 204 ~i~~l~~~---------~~~PvivKgv---~---~~~dA~~a~~~G~d~I~vsnhg-G~~~----------d~~--~~~~ 255 (344)
T cd02922 204 DIKWLRKH---------TKLPIVLKGV---Q---TVEDAVLAAEYGVDGIVLSNHG-GRQL----------DTA--PAPI 255 (344)
T ss_pred HHHHHHHh---------cCCcEEEEcC---C---CHHHHHHHHHcCCCEEEEECCC-cccC----------CCC--CCHH
Confidence 55666554 3789999943 2 2566788899999999999975 3321 011 1111
Q ss_pred ccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCC---------hHHHHHHHHHHHHHH
Q 012517 377 LSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA---------LIPQIKAELAECLER 447 (462)
Q Consensus 377 ~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~---------~i~~i~~~L~~~l~~ 447 (462)
.++..++++.+.+++++|||++|||.++.|+.++|.+||++|+++|++++ ++. ++..+++||+..|..
T Consensus 256 --~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~-~l~~~G~~gv~~~l~~l~~EL~~~m~l 332 (344)
T cd02922 256 --EVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLY-ALSAYGEEGVEKAIQILKDEIETTMRL 332 (344)
T ss_pred --HHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 13333333333455579999999999999999999999999999999988 566 789999999999999
Q ss_pred cCCCCHHHhh
Q 012517 448 DGFKSIIEAV 457 (462)
Q Consensus 448 ~G~~si~e~~ 457 (462)
.|+++++|+.
T Consensus 333 ~G~~~i~~l~ 342 (344)
T cd02922 333 LGVTSLDQLG 342 (344)
T ss_pred hCCCCHHHhC
Confidence 9999999985
No 50
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.76 E-value=8.5e-17 Score=164.67 Aligned_cols=288 Identities=19% Similarity=0.261 Sum_probs=179.0
Q ss_pred ChHHHHHHHHHHHh-cCCCCCC-CCCCCCCccEEEcCeeeCCcEEeCC-C---C-CCCHH--HHHHHHcCCccEEE--ec
Q 012517 98 DAEVAHTLAVSAAA-RGWVPRE-KRPDPAILGLEVWGRKFSNPLGLAA-G---F-DKNAE--AVEGLLGLGFGFVE--VG 166 (462)
Q Consensus 98 d~E~aH~~~~~~l~-~~~~p~~-~~~~~~~L~v~v~Gl~f~NPiglAA-G---~-dk~~e--~~~~l~~lGfG~Ve--vg 166 (462)
+-|..++--..+++ ..+.|+- +....++++++++|.++.-||++|+ | + ..++| ..+...+.|..++. .+
T Consensus 32 ~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s 111 (351)
T cd04737 32 EDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYS 111 (351)
T ss_pred chHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCC
Confidence 56666666666666 3677874 4567789999999999999999997 4 3 44665 44556778877773 33
Q ss_pred ccccCC--CCCCCCCceeeecCCCcccccCCCCchh-HHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEE
Q 012517 167 SVTPVP--QEGNPKPRIFRLRQEGAIINRCGFNSEG-IVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILG 243 (462)
Q Consensus 167 tvT~~p--q~GNp~PR~frl~~d~a~iN~~G~nn~G-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lg 243 (462)
+++.+. ....+.|++|.+.- +.+.+ .+.+.+|.++... ..+.
T Consensus 112 ~~s~Eei~~~~~~~~~wfQlY~---------~~d~~~~~~ll~rA~~aG~--------------------------~alv 156 (351)
T cd04737 112 NTSLEEIAKASNGGPKWFQLYM---------SKDDGFNRSLLDRAKAAGA--------------------------KAII 156 (351)
T ss_pred CCCHHHHHHhcCCCCeEEEEee---------cCCHHHHHHHHHHHHHcCC--------------------------CEEE
Confidence 343332 11213477777631 11121 2334444433211 0234
Q ss_pred EEecCC--CCCHHHHHHHHHHHHHHc--ccCcEEEEeccCCCCCCcccc---cCchHHHHHHHHHHHHHHhhccCCCCCC
Q 012517 244 VNIGKN--KTSEDAAADYVQGVHTLS--QYADYLVINVSSPNTPGLRML---QGRKQLKDLVKKVQAARDEMQWGEEGPP 316 (462)
Q Consensus 244 vnig~n--k~t~~~~~dy~~~~~~l~--~~aD~leiNvSsPnt~glr~l---q~~~~l~~ll~aV~~~~~~~~~~~~~~~ 316 (462)
+.+... ...+. |.......-. ...+.+ +..-+..++.... .++..--+.++++++.. +.
T Consensus 157 lTvD~p~~g~R~~---d~r~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~---------~~ 222 (351)
T cd04737 157 LTADATVGGNREA---DIRNKFQFPFGMPNLNHF--SEGTGKGKGISEIYAAAKQKLSPADIEFIAKIS---------GL 222 (351)
T ss_pred EecCCCCCCcchH---HHHhcCCCCcccchhhhh--ccccccCcchhhhhhhccCCCCHHHHHHHHHHh---------CC
Confidence 443210 00222 2222110000 001111 1111111111111 01112235566776653 68
Q ss_pred CEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCcc
Q 012517 317 PLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIP 396 (462)
Q Consensus 317 Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ip 396 (462)
||+||.- ++ .+.++.+.+.|+|+|+++|+. +|. ..+ + +.+++.+.++++.+++++|
T Consensus 223 PvivKgv--~~----~~dA~~a~~~G~d~I~vsnhG-Gr~----------ld~---~----~~~~~~l~~i~~a~~~~i~ 278 (351)
T cd04737 223 PVIVKGI--QS----PEDADVAINAGADGIWVSNHG-GRQ----------LDG---G----PASFDSLPEIAEAVNHRVP 278 (351)
T ss_pred cEEEecC--CC----HHHHHHHHHcCCCEEEEeCCC-Ccc----------CCC---C----chHHHHHHHHHHHhCCCCe
Confidence 9999942 12 356788899999999999974 331 012 2 2356788899998877899
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCC---------ChHHHHHHHHHHHHHHcCCCCHHHhhcc
Q 012517 397 LIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGP---------ALIPQIKAELAECLERDGFKSIIEAVGA 459 (462)
Q Consensus 397 IIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP---------~~i~~i~~~L~~~l~~~G~~si~e~~G~ 459 (462)
||+.|||.++.|+.++|.+||++||++|+++| |. .++..+++||...|...|++|++|+.+.
T Consensus 279 vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~-~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 349 (351)
T cd04737 279 IIFDSGVRRGEHVFKALASGADAVAVGRPVLY-GLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKRT 349 (351)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEECHHHHH-HHhhchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCC
Confidence 99999999999999999999999999999998 54 6788999999999999999999999764
No 51
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.5e-17 Score=164.18 Aligned_cols=164 Identities=24% Similarity=0.303 Sum_probs=139.0
Q ss_pred CceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCC------CcccccCchHHHHHHHHHHHHHHhhccCC
Q 012517 239 PGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTP------GLRMLQGRKQLKDLVKKVQAARDEMQWGE 312 (462)
Q Consensus 239 ~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~------glr~lq~~~~l~~ll~aV~~~~~~~~~~~ 312 (462)
+.|++||++.| +++ .++++++.+.+|+|+|.||+.||..- |--.+.+++.+.+++++|++..
T Consensus 73 D~PLIvQf~~n--dp~---~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l------- 140 (358)
T KOG2335|consen 73 DRPLIVQFGGN--DPE---NLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANL------- 140 (358)
T ss_pred CCceEEEEcCC--CHH---HHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhc-------
Confidence 45899999997 565 89999999999999999999999663 1122456788999999998763
Q ss_pred CCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC
Q 012517 313 EGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR 392 (462)
Q Consensus 313 ~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~ 392 (462)
+.||.+||.-..+.++..+.++.++++|++-++|+..|... .|..+| +...+.++.+++.++
T Consensus 141 --~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~------------kg~~~~----pad~~~i~~v~~~~~ 202 (358)
T KOG2335|consen 141 --NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQ------------KGLKTG----PADWEAIKAVRENVP 202 (358)
T ss_pred --CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHh------------cCCCCC----CcCHHHHHHHHHhCc
Confidence 78999999998888899999999999999999999887321 222343 347889999999996
Q ss_pred CCccEEEecCCCCHHHHHHHHH-hCCCEEEEchhhhhcCCChH
Q 012517 393 GKIPLIGCGGISSGEDAYRKIR-AGATLVQLYTAFAYGGPALI 434 (462)
Q Consensus 393 ~~ipIIg~GGI~s~~dA~e~i~-aGAd~Vqv~Tali~~GP~~i 434 (462)
++|||++|+|.+.+|+..+++ .||+.||.++++++ +|.++
T Consensus 203 -~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~-NPa~F 243 (358)
T KOG2335|consen 203 -DIPVIANGNILSLEDVERCLKYTGADGVMSARGLLY-NPALF 243 (358)
T ss_pred -CCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhc-Cchhh
Confidence 499999999999999999999 99999999999987 69887
No 52
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.76 E-value=5.6e-18 Score=171.32 Aligned_cols=162 Identities=24% Similarity=0.290 Sum_probs=122.7
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCC------CcccccCchHHHHHHHHHHHHHHhhccCC
Q 012517 240 GILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVINVSSPNTP------GLRMLQGRKQLKDLVKKVQAARDEMQWGE 312 (462)
Q Consensus 240 ~~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~------glr~lq~~~~l~~ll~aV~~~~~~~~~~~ 312 (462)
.|+++||+.| +++ ++.++++.+.+ .+|.|.||+.||... |-..|++++.+.+++++++++.
T Consensus 54 ~p~~~Ql~g~--~~~---~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~------- 121 (309)
T PF01207_consen 54 RPLIVQLFGN--DPE---DLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV------- 121 (309)
T ss_dssp -TEEEEEE-S---HH---HHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--------
T ss_pred cceeEEEeec--cHH---HHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc-------
Confidence 3799999986 565 89999999998 799999999999863 4445889999999999999875
Q ss_pred CCCCCEEEEecCCCC--hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHh
Q 012517 313 EGPPPLLVKIAPDLS--KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLL 390 (462)
Q Consensus 313 ~~~~Pv~vKispdl~--~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~ 390 (462)
+.||.||+....+ .++..++++.+.++|+++|+|+..|... .++|+ ...+.++++++.
T Consensus 122 --~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q--------------~~~~~----a~w~~i~~i~~~ 181 (309)
T PF01207_consen 122 --PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ--------------RYKGP----ADWEAIAEIKEA 181 (309)
T ss_dssp --SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC--------------CCTS-------HHHHHHCHHC
T ss_pred --ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh--------------cCCcc----cchHHHHHHhhc
Confidence 6899999998665 5679999999999999999999876321 33442 367889999999
Q ss_pred cCCCccEEEecCCCCHHHHHHHHH-hCCCEEEEchhhhhcCCChHHH
Q 012517 391 TRGKIPLIGCGGISSGEDAYRKIR-AGATLVQLYTAFAYGGPALIPQ 436 (462)
Q Consensus 391 ~~~~ipIIg~GGI~s~~dA~e~i~-aGAd~Vqv~Tali~~GP~~i~~ 436 (462)
+ ++|||++|||.|.+|+.++++ .|+|.||++++++. +|+++.+
T Consensus 182 ~--~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~-nP~lf~~ 225 (309)
T PF01207_consen 182 L--PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG-NPWLFRE 225 (309)
T ss_dssp ---TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC--CCHHCH
T ss_pred c--cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh-cCHHhhh
Confidence 9 599999999999999999998 49999999999964 7999984
No 53
>PLN02535 glycolate oxidase
Probab=99.72 E-value=1.3e-15 Score=156.39 Aligned_cols=300 Identities=19% Similarity=0.248 Sum_probs=176.6
Q ss_pred hhhhhhhhc-CC----ChHHHHHHHHHHHh-cCCCCCC-CCCCCCCccEEEcCeeeCCcEEeCC-C---C-CCCHH--HH
Q 012517 87 TKLVNPFFA-LL----DAEVAHTLAVSAAA-RGWVPRE-KRPDPAILGLEVWGRKFSNPLGLAA-G---F-DKNAE--AV 152 (462)
Q Consensus 87 ~~~~~p~l~-~~----d~E~aH~~~~~~l~-~~~~p~~-~~~~~~~L~v~v~Gl~f~NPiglAA-G---~-dk~~e--~~ 152 (462)
+..+.+..| ++ +-|..++--..+++ ..+.|+- +....++++++++|.++.-||++|+ | + ..+|| ..
T Consensus 16 ~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~A 95 (364)
T PLN02535 16 KQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAMHKLAHPEGEIATA 95 (364)
T ss_pred HHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHhcccCcchHHHHH
Confidence 334455554 33 56666666666666 4678874 4667889999999999999999997 4 3 56665 44
Q ss_pred HHHHcCCccEEE--ecccccCCC-CCCCCCceeeec--CCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCC
Q 012517 153 EGLLGLGFGFVE--VGSVTPVPQ-EGNPKPRIFRLR--QEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSP 227 (462)
Q Consensus 153 ~~l~~lGfG~Ve--vgtvT~~pq-~GNp~PR~frl~--~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~ 227 (462)
++..+.|.-++. ..+.+++.- ...+.|++|.+. .|..+ .+.+++|-++...+
T Consensus 96 raA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~----------~~~ll~RA~~aG~~------------- 152 (364)
T PLN02535 96 RAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDI----------AAQLVQRAEKNGYK------------- 152 (364)
T ss_pred HHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHH----------HHHHHHHHHHcCCC-------------
Confidence 556677866663 223333210 112346777663 22211 23333333332110
Q ss_pred CCcccCCCCCCCceEEEEecCC--CCCHHHHHHHHHHHH--HHcccCcEEEEeccCCCCCCccc----ccCchHHHHHHH
Q 012517 228 NDEVKAGGKAGPGILGVNIGKN--KTSEDAAADYVQGVH--TLSQYADYLVINVSSPNTPGLRM----LQGRKQLKDLVK 299 (462)
Q Consensus 228 ~~~~p~~~~~~~~~lgvnig~n--k~t~~~~~dy~~~~~--~l~~~aD~leiNvSsPnt~glr~----lq~~~~l~~ll~ 299 (462)
-|.+.+--. ..-+. |...... ....+.+....++..+...+... ..++..--+-++
T Consensus 153 -------------alvlTvD~p~~g~R~~---d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~ 216 (364)
T PLN02535 153 -------------AIVLTADVPRLGRREA---DIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIE 216 (364)
T ss_pred -------------EEEEeecCCCCCCchh---hhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHH
Confidence 122222100 00011 1110000 00000000000110000011000 011111113345
Q ss_pred HHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccc
Q 012517 300 KVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSL 379 (462)
Q Consensus 300 aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~ 379 (462)
++++. .+.||+||-- ++. +-++.+.+.|+|+|+++|+. +|.. .++ +.
T Consensus 217 ~lr~~---------~~~PvivKgV--~~~----~dA~~a~~~GvD~I~vsn~G-Gr~~----------d~~-------~~ 263 (364)
T PLN02535 217 WLRSI---------TNLPILIKGV--LTR----EDAIKAVEVGVAGIIVSNHG-ARQL----------DYS-------PA 263 (364)
T ss_pred HHHhc---------cCCCEEEecC--CCH----HHHHHHHhcCCCEEEEeCCC-cCCC----------CCC-------hH
Confidence 55543 3789999943 221 23788899999999999985 2310 011 33
Q ss_pred hHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCC---------hHHHHHHHHHHHHHHcCC
Q 012517 380 SNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA---------LIPQIKAELAECLERDGF 450 (462)
Q Consensus 380 al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~---------~i~~i~~~L~~~l~~~G~ 450 (462)
++..+.++++.+++++|||+.|||.++.|+.+.|.+||++|+++++++| +.. .++.++++|+..|...|.
T Consensus 264 t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~-~l~~~g~~gv~~~l~~l~~el~~~m~l~G~ 342 (364)
T PLN02535 264 TISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIY-GLAAKGEDGVRKVIEMLKDELEITMALSGC 342 (364)
T ss_pred HHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHh-hhhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6788999998886689999999999999999999999999999999998 454 788889999999999999
Q ss_pred CCHHHhhcc
Q 012517 451 KSIIEAVGA 459 (462)
Q Consensus 451 ~si~e~~G~ 459 (462)
++++|+.+.
T Consensus 343 ~~i~el~~~ 351 (364)
T PLN02535 343 PSVKDITRS 351 (364)
T ss_pred CCHHHhhhh
Confidence 999999864
No 54
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.67 E-value=1.6e-14 Score=148.35 Aligned_cols=290 Identities=17% Similarity=0.247 Sum_probs=171.9
Q ss_pred ChHHHHHHHHHHHh-cCCCCCC-CCCCCCCccEEEcCeeeCCcEEeCC-C---C-CCCHH--HHHHHHcCCccEEE--ec
Q 012517 98 DAEVAHTLAVSAAA-RGWVPRE-KRPDPAILGLEVWGRKFSNPLGLAA-G---F-DKNAE--AVEGLLGLGFGFVE--VG 166 (462)
Q Consensus 98 d~E~aH~~~~~~l~-~~~~p~~-~~~~~~~L~v~v~Gl~f~NPiglAA-G---~-dk~~e--~~~~l~~lGfG~Ve--vg 166 (462)
+-|..++--..+++ ..+.|+- +....++++++++|.++.-||++|+ | + +.+|| ..++..+.|..++. ..
T Consensus 40 ~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~s 119 (367)
T TIGR02708 40 GDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYS 119 (367)
T ss_pred chHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccc
Confidence 44554455555555 4678874 4567789999999999999999997 3 3 55665 44556778877664 22
Q ss_pred ccccCC--CCCCCCCceeeecCCCcccccCCCCchhH-HHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEE
Q 012517 167 SVTPVP--QEGNPKPRIFRLRQEGAIINRCGFNSEGI-VAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILG 243 (462)
Q Consensus 167 tvT~~p--q~GNp~PR~frl~~d~a~iN~~G~nn~G~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lg 243 (462)
|.+++. ...++.|+.|.+.- +.+..+ +.+++|.++...+ -+.
T Consensus 120 s~slEev~~~~~~~~~wfQlY~---------~~dr~~~~~li~RA~~aG~~--------------------------alv 164 (367)
T TIGR02708 120 TADLPEISEALNGTPHWFQFYM---------SKDDGINRDIMDRVKADGAK--------------------------AIV 164 (367)
T ss_pred cCCHHHHHhhcCCCceEEEEec---------cCCHHHHHHHHHHHHHcCCC--------------------------EEE
Confidence 333321 11123466776531 122322 3444444332110 233
Q ss_pred EEecCC--CCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCC---CcccccCchHHHHHHHHHHHHHHhhccCCCCCCCE
Q 012517 244 VNIGKN--KTSEDAAADYVQGVHTLSQYADYLVINVSSPNTP---GLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPL 318 (462)
Q Consensus 244 vnig~n--k~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~---glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv 318 (462)
+.+-.. ..-+. |.......-.. .....-++..|... ......++..--+-++++++. .+.||
T Consensus 165 lTvD~p~~g~R~~---d~r~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~---------~~~Pv 231 (367)
T TIGR02708 165 LTADATVGGNREV---DVRNGFVFPVG-MPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGY---------SGLPV 231 (367)
T ss_pred EecCCCCCCcchh---hhhcCCCCCCc-cchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHh---------cCCCE
Confidence 333110 00111 11111000000 00000000000000 000000111111346666554 37899
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE
Q 012517 319 LVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 319 ~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII 398 (462)
+||- + ...+.++.+.+.|+|+|+++|.. +|. .. +++ .+++.+.++++.+++++|||
T Consensus 232 ivKG---v---~~~eda~~a~~~Gvd~I~VS~HG-Grq----------~~---~~~----a~~~~L~ei~~av~~~i~vi 287 (367)
T TIGR02708 232 YVKG---P---QCPEDADRALKAGASGIWVTNHG-GRQ----------LD---GGP----AAFDSLQEVAEAVDKRVPIV 287 (367)
T ss_pred EEeC---C---CCHHHHHHHHHcCcCEEEECCcC-ccC----------CC---CCC----cHHHHHHHHHHHhCCCCcEE
Confidence 9993 2 22677889999999999999986 231 01 122 25678889998887789999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhhhhc----CC----ChHHHHHHHHHHHHHHcCCCCHHHhhcc
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAFAYG----GP----ALIPQIKAELAECLERDGFKSIIEAVGA 459 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~----GP----~~i~~i~~~L~~~l~~~G~~si~e~~G~ 459 (462)
+.|||.++.|+.++|..||++|++++.++|. |. .+++.+++||+..|...|.++++|+...
T Consensus 288 ~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~ 356 (367)
T TIGR02708 288 FDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDVKGF 356 (367)
T ss_pred eeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCcc
Confidence 9999999999999999999999999999873 32 3677888899999999999999999753
No 55
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.60 E-value=6.5e-13 Score=137.20 Aligned_cols=292 Identities=23% Similarity=0.238 Sum_probs=172.3
Q ss_pred ChHHHHHHHHHHHh-cCCCCCC-CCCCCCCccEEEcCeeeCCcEEeCC-C---C-CCCHH--HHHHHHcCCccEEEec--
Q 012517 98 DAEVAHTLAVSAAA-RGWVPRE-KRPDPAILGLEVWGRKFSNPLGLAA-G---F-DKNAE--AVEGLLGLGFGFVEVG-- 166 (462)
Q Consensus 98 d~E~aH~~~~~~l~-~~~~p~~-~~~~~~~L~v~v~Gl~f~NPiglAA-G---~-dk~~e--~~~~l~~lGfG~Vevg-- 166 (462)
+-|..++--..++. ..+.|+- +.....+++++++|.++.-||++|+ | + ..+|| ..++..+.|..++.-.
T Consensus 30 ~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~s 109 (381)
T PRK11197 30 YAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVS 109 (381)
T ss_pred chHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCC
Confidence 55666666666666 4677874 4667889999999999999999997 3 3 56676 4555778888776432
Q ss_pred ccccCC-CCCCCCCceeee--cCCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEE
Q 012517 167 SVTPVP-QEGNPKPRIFRL--RQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILG 243 (462)
Q Consensus 167 tvT~~p-q~GNp~PR~frl--~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lg 243 (462)
|.+++. ....+.|+.|.+ +.|..+ .+.+++|-++...+ -|.
T Consensus 110 s~slEeia~~~~~~~wfQlY~~~Dr~~----------~~~li~RA~~aG~~--------------------------alv 153 (381)
T PRK11197 110 VCPIEEVAPAIKRPMWFQLYVLRDRGF----------MRNALERAKAAGCS--------------------------TLV 153 (381)
T ss_pred cCCHHHHHhccCCCeEEEEEecCCHHH----------HHHHHHHHHHcCCC--------------------------EEE
Confidence 222221 112245788876 333321 23444444432110 233
Q ss_pred EEecCC--CCCHHHHH--------HHHHHHHHHc-c-c-CcEEEEe--ccCCCCC-------Ccccc-------cCchHH
Q 012517 244 VNIGKN--KTSEDAAA--------DYVQGVHTLS-Q-Y-ADYLVIN--VSSPNTP-------GLRML-------QGRKQL 294 (462)
Q Consensus 244 vnig~n--k~t~~~~~--------dy~~~~~~l~-~-~-aD~leiN--vSsPnt~-------glr~l-------q~~~~l 294 (462)
+.+--. ...+.+.. .+....+.+. + + ...+.-+ ..-+|.. |.++. .++..-
T Consensus 154 lTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~lt 233 (381)
T PRK11197 154 FTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSIS 233 (381)
T ss_pred EecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCC
Confidence 333110 00111000 0000011000 0 0 0000000 0001111 11110 000000
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCC
Q 012517 295 KDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGK 374 (462)
Q Consensus 295 ~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~ 374 (462)
=+-++++++. .+.||++|=- ++ .+-++.+.+.|+|+|+++|.. +|.. .+
T Consensus 234 W~di~~lr~~---------~~~pvivKgV--~s----~~dA~~a~~~Gvd~I~Vs~hG-Gr~~----------d~----- 282 (381)
T PRK11197 234 WKDLEWIRDF---------WDGPMVIKGI--LD----PEDARDAVRFGADGIVVSNHG-GRQL----------DG----- 282 (381)
T ss_pred HHHHHHHHHh---------CCCCEEEEec--CC----HHHHHHHHhCCCCEEEECCCC-CCCC----------CC-----
Confidence 0125555543 3789999976 33 345778889999999999863 2210 00
Q ss_pred cCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhc----CC----ChHHHHHHHHHHHHH
Q 012517 375 PLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYG----GP----ALIPQIKAELAECLE 446 (462)
Q Consensus 375 ~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~----GP----~~i~~i~~~L~~~l~ 446 (462)
.+.+.+.+.++++.++.++|||+.|||.++.|+.+.|..||++|++++.|+|. |. ..++.+++||+..|.
T Consensus 283 --~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~ 360 (381)
T PRK11197 283 --VLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMT 360 (381)
T ss_pred --cccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 12256788888888766899999999999999999999999999999999872 22 467888889999999
Q ss_pred HcCCCCHHHhhc
Q 012517 447 RDGFKSIIEAVG 458 (462)
Q Consensus 447 ~~G~~si~e~~G 458 (462)
..|.+|++|+..
T Consensus 361 l~G~~~i~el~~ 372 (381)
T PRK11197 361 LTGAKSISEITR 372 (381)
T ss_pred HHCCCCHHHhCH
Confidence 999999999864
No 56
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.60 E-value=2.3e-13 Score=139.81 Aligned_cols=299 Identities=19% Similarity=0.238 Sum_probs=175.4
Q ss_pred hhhhhhhhc-CC----ChHHHHHHHHHHHh-cCCCCCC-CCCCCCCccEEEcCeeeCCcEEeCC-C---C-CCCHH--HH
Q 012517 87 TKLVNPFFA-LL----DAEVAHTLAVSAAA-RGWVPRE-KRPDPAILGLEVWGRKFSNPLGLAA-G---F-DKNAE--AV 152 (462)
Q Consensus 87 ~~~~~p~l~-~~----d~E~aH~~~~~~l~-~~~~p~~-~~~~~~~L~v~v~Gl~f~NPiglAA-G---~-dk~~e--~~ 152 (462)
+..+.+..+ ++ +-|..++--..+++ ..+.|+- +.....+++++++|.++.-||++|+ | + ..+|| ..
T Consensus 14 r~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~A 93 (367)
T PLN02493 14 KQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATA 93 (367)
T ss_pred HHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHHhhcCCchHHHHH
Confidence 334455444 33 55666666666666 4678874 4667889999999999999999997 4 3 56665 45
Q ss_pred HHHHcCCccEEE--ecccccCC--CCCCCCCceeeecCCCcccccCCCCchh-HHHHHHHHHHhhccCcccccccCCCCC
Q 012517 153 EGLLGLGFGFVE--VGSVTPVP--QEGNPKPRIFRLRQEGAIINRCGFNSEG-IVAVAKRLGAQHGKRKLDETSRTSSSP 227 (462)
Q Consensus 153 ~~l~~lGfG~Ve--vgtvT~~p--q~GNp~PR~frl~~d~a~iN~~G~nn~G-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 227 (462)
++..+.|.-++. ..|.+++. +. .+.|+.|.+.- +.+.+ .+.+.+|-++...+
T Consensus 94 raA~~~gi~~~lSt~ss~slEeva~~-~~~~~wfQlY~---------~~Dr~~~~~li~RA~~aG~~------------- 150 (367)
T PLN02493 94 RAASAAGTIMTLSSWATSSVEEVAST-GPGIRFFQLYV---------YKNRNVVEQLVRRAERAGFK------------- 150 (367)
T ss_pred HHHHHcCCCeeecCcccCCHHHHHhc-CCCCcEEEEee---------cCCHHHHHHHHHHHHHcCCC-------------
Confidence 556778877664 23333321 11 23466776531 11111 12333333322110
Q ss_pred CCcccCCCCCCCceEEEEecCC--CCCHHHHHHHHHHHH---HHc-ccCcEEEE-eccCCCCCCccc----ccCch-HHH
Q 012517 228 NDEVKAGGKAGPGILGVNIGKN--KTSEDAAADYVQGVH---TLS-QYADYLVI-NVSSPNTPGLRM----LQGRK-QLK 295 (462)
Q Consensus 228 ~~~~p~~~~~~~~~lgvnig~n--k~t~~~~~dy~~~~~---~l~-~~aD~lei-NvSsPnt~glr~----lq~~~-~l~ 295 (462)
-+.+-+-.. ..-+. |....+. .+. ...+.+.. +..-+..++... ..++. ..
T Consensus 151 -------------alvlTvD~p~~G~R~~---d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW- 213 (367)
T PLN02493 151 -------------AIALTVDTPRLGRRES---DIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSW- 213 (367)
T ss_pred -------------EEEEEcCCCCCCcchh---hhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCH-
Confidence 123322110 00111 1111100 000 00000000 000000001000 00111 11
Q ss_pred HHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCc
Q 012517 296 DLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKP 375 (462)
Q Consensus 296 ~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~ 375 (462)
+-++++++. .+.||+||---+ .+-++.+.+.|+|+|+++|.-- |.- .++
T Consensus 214 ~di~wlr~~---------~~~PiivKgV~~------~~dA~~a~~~Gvd~I~VsnhGG-rql----------d~~----- 262 (367)
T PLN02493 214 KDVQWLQTI---------TKLPILVKGVLT------GEDARIAIQAGAAGIIVSNHGA-RQL----------DYV----- 262 (367)
T ss_pred HHHHHHHhc---------cCCCEEeecCCC------HHHHHHHHHcCCCEEEECCCCC-CCC----------CCc-----
Confidence 225555543 378999998632 4567889999999999999852 210 011
Q ss_pred CccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh----cCC----ChHHHHHHHHHHHHHH
Q 012517 376 LLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY----GGP----ALIPQIKAELAECLER 447 (462)
Q Consensus 376 l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~----~GP----~~i~~i~~~L~~~l~~ 447 (462)
+.+...+.++++.+.+++|||+.|||.++.|+.+.|..||++|.+++.++| .|. .+++.+++++...|..
T Consensus 263 --~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l 340 (367)
T PLN02493 263 --PATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMAL 340 (367)
T ss_pred --hhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 236788889988887789999999999999999999999999999999986 233 3566778888899999
Q ss_pred cCCCCHHHhhc
Q 012517 448 DGFKSIIEAVG 458 (462)
Q Consensus 448 ~G~~si~e~~G 458 (462)
.|.++++|+.-
T Consensus 341 ~G~~~i~~l~~ 351 (367)
T PLN02493 341 SGCRSLKEISR 351 (367)
T ss_pred hCCCCHHHhCh
Confidence 99999999853
No 57
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.59 E-value=1.1e-12 Score=135.81 Aligned_cols=290 Identities=22% Similarity=0.303 Sum_probs=172.7
Q ss_pred ChHHHHHHHHHHHh-cCCCCCC-CCCCCCCccEEEcCeeeCCcEEeCC-C----CCCCHH--HHHHHHcCCccEEEe--c
Q 012517 98 DAEVAHTLAVSAAA-RGWVPRE-KRPDPAILGLEVWGRKFSNPLGLAA-G----FDKNAE--AVEGLLGLGFGFVEV--G 166 (462)
Q Consensus 98 d~E~aH~~~~~~l~-~~~~p~~-~~~~~~~L~v~v~Gl~f~NPiglAA-G----~dk~~e--~~~~l~~lGfG~Vev--g 166 (462)
+-|..++--..+++ ..+.|+- +.....+++++++|.++.-||++|+ | +..+|| ..++..+.|.-++.- .
T Consensus 45 ~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~s 124 (383)
T cd03332 45 GSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTAS 124 (383)
T ss_pred chHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCC
Confidence 45666666666666 3677874 4667889999999999999999997 4 356666 455577888777753 3
Q ss_pred ccccCC--CCCCCCCceeeecCCCcccccCCCCchh-HHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEE
Q 012517 167 SVTPVP--QEGNPKPRIFRLRQEGAIINRCGFNSEG-IVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILG 243 (462)
Q Consensus 167 tvT~~p--q~GNp~PR~frl~~d~a~iN~~G~nn~G-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lg 243 (462)
|.+++. ....+.|..|.+.-. .+.. .+.+++|.++...+ .|.
T Consensus 125 s~slEeIa~~~~~~~~wfQlY~~---------~dr~~~~~ll~RA~~aG~~--------------------------alv 169 (383)
T cd03332 125 SSSIEDVAAAAGDAPRWFQLYWP---------KDDDLTESLLRRAEKAGYR--------------------------VLV 169 (383)
T ss_pred CCCHHHHHhhcCCCCcEEEeeCC---------CCHHHHHHHHHHHHHcCCC--------------------------EEE
Confidence 333322 111124677765321 1111 23444444332110 233
Q ss_pred EEecC--CCCCHHHHHHHHHHHHHHc---ccCcEE-----EEeccCCCCCCcc----------c-c---cCchHHHHHHH
Q 012517 244 VNIGK--NKTSEDAAADYVQGVHTLS---QYADYL-----VINVSSPNTPGLR----------M-L---QGRKQLKDLVK 299 (462)
Q Consensus 244 vnig~--nk~t~~~~~dy~~~~~~l~---~~aD~l-----eiNvSsPnt~glr----------~-l---q~~~~l~~ll~ 299 (462)
+.+-- ...-+. |......-.. ...+.+ ..|+..+..++.. . . .++..-=+-++
T Consensus 170 lTVD~pv~g~Rer---d~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~ 246 (383)
T cd03332 170 VTLDTWSLGWRPR---DLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLA 246 (383)
T ss_pred EeCCCCCCCCchh---hhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHH
Confidence 33311 000111 2111110000 000000 0111000000000 0 0 01111113455
Q ss_pred HHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccc
Q 012517 300 KVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSL 379 (462)
Q Consensus 300 aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~ 379 (462)
++++. .+.||++|=- ++ .+-++.+.+.|+|+|+++|.. +|. ..++ +.
T Consensus 247 ~lr~~---------~~~pvivKgV--~~----~~dA~~a~~~G~d~I~vsnhG-Gr~----------~d~~-------~~ 293 (383)
T cd03332 247 FLREW---------TDLPIVLKGI--LH----PDDARRAVEAGVDGVVVSNHG-GRQ----------VDGS-------IA 293 (383)
T ss_pred HHHHh---------cCCCEEEecC--CC----HHHHHHHHHCCCCEEEEcCCC-CcC----------CCCC-------cC
Confidence 55543 2689999932 33 345778889999999999875 231 1122 22
Q ss_pred hHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh----cCC----ChHHHHHHHHHHHHHHcCCC
Q 012517 380 SNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY----GGP----ALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 380 al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~----~GP----~~i~~i~~~L~~~l~~~G~~ 451 (462)
+...+.++++.+++++|||+.|||.++.|+.+.|..||++|++++.++| .|. .+++.+++||+..|...|.+
T Consensus 294 t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~ 373 (383)
T cd03332 294 ALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIR 373 (383)
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5778899999887789999999999999999999999999999999996 232 46778888999999999999
Q ss_pred CHHHhhc
Q 012517 452 SIIEAVG 458 (462)
Q Consensus 452 si~e~~G 458 (462)
|++|+..
T Consensus 374 ~i~~l~~ 380 (383)
T cd03332 374 SIAELTR 380 (383)
T ss_pred CHHHhCc
Confidence 9999864
No 58
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.57 E-value=2.6e-13 Score=139.68 Aligned_cols=122 Identities=31% Similarity=0.382 Sum_probs=94.2
Q ss_pred CCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC
Q 012517 314 GPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG 393 (462)
Q Consensus 314 ~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~ 393 (462)
.+.||+||-- ++ .+-++.+.+.|+|||+++|.- +|. ..+|. .+.+.+.++++.+++
T Consensus 224 ~~~pvivKgv--~~----~~da~~~~~~G~~~i~vs~hG-Gr~----------~d~~~-------~~~~~L~~i~~~~~~ 279 (356)
T PF01070_consen 224 WKLPVIVKGV--LS----PEDAKRAVDAGVDGIDVSNHG-GRQ----------LDWGP-------PTIDALPEIRAAVGD 279 (356)
T ss_dssp CSSEEEEEEE---S----HHHHHHHHHTT-SEEEEESGT-GTS----------STTS--------BHHHHHHHHHHHHTT
T ss_pred cCCceEEEec--cc----HHHHHHHHhcCCCEEEecCCC-ccc----------Ccccc-------ccccccHHHHhhhcC
Confidence 3799999987 44 344678889999999999975 221 11222 367889999998888
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh----cCC----ChHHHHHHHHHHHHHHcCCCCHHHhhcc
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY----GGP----ALIPQIKAELAECLERDGFKSIIEAVGA 459 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~----~GP----~~i~~i~~~L~~~l~~~G~~si~e~~G~ 459 (462)
++|||+.|||.++.|+.+.|..||++|.+++.++| .|. .+++.+++||+..|...|.++++|+...
T Consensus 280 ~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~ 353 (356)
T PF01070_consen 280 DIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVLEILKEELKRAMFLLGARSIAELRRS 353 (356)
T ss_dssp SSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGG
T ss_pred CeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHH
Confidence 99999999999999999999999999999999987 233 2577788899999999999999999754
No 59
>PLN02979 glycolate oxidase
Probab=99.56 E-value=7.8e-13 Score=135.03 Aligned_cols=121 Identities=24% Similarity=0.397 Sum_probs=98.6
Q ss_pred CCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC
Q 012517 314 GPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG 393 (462)
Q Consensus 314 ~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~ 393 (462)
.+.||+||---+ .+-++.+.+.|+|+|+++|.- +|. +.+ -+.+...+.++++.+++
T Consensus 222 ~~~PvivKgV~~------~~dA~~a~~~Gvd~I~VsnhG-Grq--------------ld~---~p~t~~~L~ei~~~~~~ 277 (366)
T PLN02979 222 TKLPILVKGVLT------GEDARIAIQAGAAGIIVSNHG-ARQ--------------LDY---VPATISALEEVVKATQG 277 (366)
T ss_pred cCCCEEeecCCC------HHHHHHHHhcCCCEEEECCCC-cCC--------------CCC---chhHHHHHHHHHHHhCC
Confidence 378999998632 456788999999999999984 221 000 12367888899888877
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh----cCC----ChHHHHHHHHHHHHHHcCCCCHHHhhc
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY----GGP----ALIPQIKAELAECLERDGFKSIIEAVG 458 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~----~GP----~~i~~i~~~L~~~l~~~G~~si~e~~G 458 (462)
++|||+.|||.++.|+.+.|..||++|++++.++| .|. .+++.+++++...|...|.++++|+..
T Consensus 278 ~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~ 350 (366)
T PLN02979 278 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISR 350 (366)
T ss_pred CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCh
Confidence 89999999999999999999999999999999986 243 367778888999999999999999864
No 60
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.54 E-value=5.2e-12 Score=129.68 Aligned_cols=286 Identities=21% Similarity=0.232 Sum_probs=171.2
Q ss_pred ChHHHHHHHHHHHh-cCCCCCC-CCCCCCCccEEEcCeeeCCcEEeCC-C----CCCCHHH--HHHHHcCCccEEE--ec
Q 012517 98 DAEVAHTLAVSAAA-RGWVPRE-KRPDPAILGLEVWGRKFSNPLGLAA-G----FDKNAEA--VEGLLGLGFGFVE--VG 166 (462)
Q Consensus 98 d~E~aH~~~~~~l~-~~~~p~~-~~~~~~~L~v~v~Gl~f~NPiglAA-G----~dk~~e~--~~~l~~lGfG~Ve--vg 166 (462)
+-|..++--..++. ..+.|+- +.....+++++++|.++.-||++|+ | +..+||. .++..+.|..++. ..
T Consensus 24 ~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s 103 (361)
T cd04736 24 EDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTAS 103 (361)
T ss_pred chHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCC
Confidence 55666666666665 4678874 4567789999999999999999997 3 3667774 4556778877764 33
Q ss_pred ccccCC-CCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEE
Q 012517 167 SVTPVP-QEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVN 245 (462)
Q Consensus 167 tvT~~p-q~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvn 245 (462)
|.+++. ....+.|+.|.|. + ++..=.+.+.+|.++...+ -|.+.
T Consensus 104 s~siEeva~a~~~~~wfQLY-----~----~~r~~~~~ll~RA~~aG~~--------------------------alvlT 148 (361)
T cd04736 104 NMSIEDVARQADGDLWFQLY-----V----VHRELAELLVKRALAAGYT--------------------------TLVLT 148 (361)
T ss_pred CCCHHHHHhhcCCCeEEEEE-----e----cCHHHHHHHHHHHHHcCCC--------------------------EEEEe
Confidence 444432 1122457888763 1 1111123334443332110 23333
Q ss_pred ecCC--CCCHHHHHHHHHHH------------HHHc-c-c-CcEE-----EE-eccCCCCCC---ccc----ccCchHHH
Q 012517 246 IGKN--KTSEDAAADYVQGV------------HTLS-Q-Y-ADYL-----VI-NVSSPNTPG---LRM----LQGRKQLK 295 (462)
Q Consensus 246 ig~n--k~t~~~~~dy~~~~------------~~l~-~-~-aD~l-----ei-NvSsPnt~g---lr~----lq~~~~l~ 295 (462)
+--. ..-+. |....+ +.+. + + .+++ .+ |+..++..+ ... ..++...-
T Consensus 149 vD~pv~g~R~~---d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w 225 (361)
T cd04736 149 TDVAVNGYRER---DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNW 225 (361)
T ss_pred cCCCCCCCchh---hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCH
Confidence 3100 00111 111110 0000 0 0 0011 00 221111111 000 11222233
Q ss_pred HHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCc
Q 012517 296 DLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKP 375 (462)
Q Consensus 296 ~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~ 375 (462)
+.++++++. .+.|+++|=- ++ .+-+..+.+.|+|+|+++|... |. + .+.
T Consensus 226 ~~i~~ir~~---------~~~pviiKgV--~~----~eda~~a~~~G~d~I~VSnhGG-rq--l--------d~~----- 274 (361)
T cd04736 226 QDLRWLRDL---------WPHKLLVKGI--VT----AEDAKRCIELGADGVILSNHGG-RQ--L--------DDA----- 274 (361)
T ss_pred HHHHHHHHh---------CCCCEEEecC--CC----HHHHHHHHHCCcCEEEECCCCc-CC--C--------cCC-----
Confidence 456666654 3679999942 33 3457788899999999999752 21 0 111
Q ss_pred CccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh----cCC----ChHHHHHHHHHHHHHH
Q 012517 376 LLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY----GGP----ALIPQIKAELAECLER 447 (462)
Q Consensus 376 l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~----~GP----~~i~~i~~~L~~~l~~ 447 (462)
+.+.+.+.++++.+ ++|||..|||.++.|+.+.|..||++|+++++++| .|. ..++.+++||+..|..
T Consensus 275 --~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l 350 (361)
T cd04736 275 --IAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLAL 350 (361)
T ss_pred --ccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 12578888999888 59999999999999999999999999999999996 343 3567788889999999
Q ss_pred cCCCCHHHh
Q 012517 448 DGFKSIIEA 456 (462)
Q Consensus 448 ~G~~si~e~ 456 (462)
.|++|++|+
T Consensus 351 ~G~~~i~~l 359 (361)
T cd04736 351 IGCPDIASL 359 (361)
T ss_pred hCCCCHHHc
Confidence 999999997
No 61
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.50 E-value=1.2e-11 Score=125.53 Aligned_cols=240 Identities=16% Similarity=0.189 Sum_probs=155.5
Q ss_pred CCCCCCccEEEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCC-ccEEEecccccCCCCCCCCCceeeecCCCcccccCCCC
Q 012517 120 RPDPAILGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLG-FGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFN 197 (462)
Q Consensus 120 ~~~~~~L~v~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lG-fG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~n 197 (462)
..++.+|+++++|++|+-||.++|= ...|.+....+.+.| ++++ .+ +.
T Consensus 21 s~~dvdlst~~~~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~-~k-~~---------------------------- 70 (326)
T PRK05458 21 SRSECDTSVTLGPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIM-HR-FD---------------------------- 70 (326)
T ss_pred CHHHcccceEECCcEecCcEEEecccchhHHHHHHHHHHcCCEEEE-ec-CC----------------------------
Confidence 3467899999999999999999983 244566555555553 2222 11 11
Q ss_pred chhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHccc--CcEEEE
Q 012517 198 SEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQY--ADYLVI 275 (462)
Q Consensus 198 n~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~--aD~lei 275 (462)
.+...+..++... . .-.++++++. +++ ++.++.+.+... +|+|.|
T Consensus 71 ---~e~~~~~~r~~~~-------------------~-----~l~v~~~vg~---~~~---~~~~~~~Lv~ag~~~d~i~i 117 (326)
T PRK05458 71 ---PEARIPFIKDMHE-------------------Q-----GLIASISVGV---KDD---EYDFVDQLAAEGLTPEYITI 117 (326)
T ss_pred ---HHHHHHHHHhccc-------------------c-----ccEEEEEecC---CHH---HHHHHHHHHhcCCCCCEEEE
Confidence 1111111111110 0 0135555553 344 444444445533 499999
Q ss_pred eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEE-ecCCCChhhHHHHHHHHHHcCCcEEEEecCCcc
Q 012517 276 NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVK-IAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS 354 (462)
Q Consensus 276 NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vK-ispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~ 354 (462)
..+-|+. +.+.++++.+++.. .++||++| +. + .+-+..+.++|+|+|.++++.-
T Consensus 118 D~a~gh~---------~~~~e~I~~ir~~~--------p~~~vi~g~V~---t----~e~a~~l~~aGad~i~vg~~~G- 172 (326)
T PRK05458 118 DIAHGHS---------DSVINMIQHIKKHL--------PETFVIAGNVG---T----PEAVRELENAGADATKVGIGPG- 172 (326)
T ss_pred ECCCCch---------HHHHHHHHHHHhhC--------CCCeEEEEecC---C----HHHHHHHHHcCcCEEEECCCCC-
Confidence 8876553 34667788887653 35889888 65 2 3456778899999999987642
Q ss_pred CCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh-------
Q 012517 355 RPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA------- 427 (462)
Q Consensus 355 r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali------- 427 (462)
+.- ... ...|. |.|-+ .+..++++++.+ ++|||+.|||.++.|+.++|.+||++|++++.|.
T Consensus 173 ~~~-~t~----~~~g~--~~~~w--~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg 241 (326)
T PRK05458 173 KVC-ITK----IKTGF--GTGGW--QLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPG 241 (326)
T ss_pred ccc-ccc----cccCC--CCCcc--HHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCC
Confidence 110 000 01121 12211 344578888877 6999999999999999999999999999999997
Q ss_pred -------------------hc--------CC-----------ChHHHHHHHHHHHHHHcCCCCHHHhhc
Q 012517 428 -------------------YG--------GP-----------ALIPQIKAELAECLERDGFKSIIEAVG 458 (462)
Q Consensus 428 -------------------~~--------GP-----------~~i~~i~~~L~~~l~~~G~~si~e~~G 458 (462)
|. |. .++.++..+|+..|..-|.+|+.|++-
T Consensus 242 ~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~ 310 (326)
T PRK05458 242 KTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRK 310 (326)
T ss_pred ceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhc
Confidence 31 11 245677888999999999999999984
No 62
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.45 E-value=2.2e-11 Score=123.11 Aligned_cols=240 Identities=15% Similarity=0.182 Sum_probs=150.4
Q ss_pred CCCCCccEEEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCch
Q 012517 121 PDPAILGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSE 199 (462)
Q Consensus 121 ~~~~~L~v~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~ 199 (462)
.++.+|+++++|++|.-||.++|= ...|.+.-..+.+.|.=.+..+ ..
T Consensus 19 ~~dVdlst~~~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK-~~------------------------------ 67 (321)
T TIGR01306 19 RSECDTSVTLGKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHR-FD------------------------------ 67 (321)
T ss_pred HHHceeeEEECCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEec-CC------------------------------
Confidence 467899999999999999999983 2556666666776642222222 11
Q ss_pred hHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHccc--CcEEEEec
Q 012517 200 GIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQY--ADYLVINV 277 (462)
Q Consensus 200 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~--aD~leiNv 277 (462)
.+.+.+.+++...+ ..+++++++. +++ |+.+....+... +|+|++..
T Consensus 68 -~E~~~sfvrk~k~~------------------------~L~v~~SvG~---t~e---~~~r~~~lv~a~~~~d~i~~D~ 116 (321)
T TIGR01306 68 -EESRIPFIKDMQER------------------------GLFASISVGV---KAC---EYEFVTQLAEEALTPEYITIDI 116 (321)
T ss_pred -HHHHHHHHHhcccc------------------------ccEEEEEcCC---CHH---HHHHHHHHHhcCCCCCEEEEeC
Confidence 12222222221110 0146777765 455 455555555554 79999987
Q ss_pred cCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCC-EEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCC
Q 012517 278 SSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPP-LLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRP 356 (462)
Q Consensus 278 SsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~P-v~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~ 356 (462)
+-=|. +.+.+.++.+++.. +.| |+++ ++. ..+.++.+.++|+|+|.++|..-+..
T Consensus 117 ahg~s---------~~~~~~i~~i~~~~---------p~~~vi~G---nV~---t~e~a~~l~~aGad~I~V~~G~G~~~ 172 (321)
T TIGR01306 117 AHGHS---------NSVINMIKHIKTHL---------PDSFVIAG---NVG---TPEAVRELENAGADATKVGIGPGKVC 172 (321)
T ss_pred ccCch---------HHHHHHHHHHHHhC---------CCCEEEEe---cCC---CHHHHHHHHHcCcCEEEECCCCCccc
Confidence 53221 34556666665531 233 4444 321 35678889999999999997532110
Q ss_pred CCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh---------
Q 012517 357 DPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA--------- 427 (462)
Q Consensus 357 ~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali--------- 427 (462)
+..... .. |..+ ..+..+.++++.. ++|||+.|||.++.|+.++|.+|||+||+++.|-
T Consensus 173 --~tr~~~--g~-g~~~-----~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~ 240 (321)
T TIGR01306 173 --ITKIKT--GF-GTGG-----WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGET 240 (321)
T ss_pred --cceeee--cc-CCCc-----hHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCce
Confidence 000000 01 1111 1246788888887 6999999999999999999999999999998872
Q ss_pred ----------------------------------hcCC--ChHHHHHHHHHHHHHHcCCCCHHHhhc
Q 012517 428 ----------------------------------YGGP--ALIPQIKAELAECLERDGFKSIIEAVG 458 (462)
Q Consensus 428 ----------------------------------~~GP--~~i~~i~~~L~~~l~~~G~~si~e~~G 458 (462)
|.|+ .++.++..+|+.-|..-|++++.|+.-
T Consensus 241 ~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~ 307 (321)
T TIGR01306 241 VEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRT 307 (321)
T ss_pred EeeCCeEHhhhcCchhhhcccccccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhh
Confidence 1121 245666777778888888889888873
No 63
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=99.44 E-value=2.4e-13 Score=131.23 Aligned_cols=121 Identities=24% Similarity=0.276 Sum_probs=94.4
Q ss_pred ccCcE--EEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe---cCCCChhhHHHHHHHHHHcC
Q 012517 268 QYADY--LVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI---APDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 268 ~~aD~--leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi---spdl~~~~~~~ia~~~~~~G 342 (462)
.++|- +++|+++|++++ +..+.+.+++.++. ..|+.+|+ +++++++++..+++.+.++|
T Consensus 86 ~GA~EiD~Vin~~~~~~g~---------~~~v~~ei~~v~~~-------~~~~~lKvIlEt~~L~~e~i~~a~~~~~~ag 149 (221)
T PRK00507 86 NGADEIDMVINIGALKSGD---------WDAVEADIRAVVEA-------AGGAVLKVIIETCLLTDEEKVKACEIAKEAG 149 (221)
T ss_pred cCCceEeeeccHHHhcCCC---------HHHHHHHHHHHHHh-------cCCceEEEEeecCcCCHHHHHHHHHHHHHhC
Confidence 34544 457999999864 23344444443321 14789999 99999999999999999999
Q ss_pred CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEE
Q 012517 343 LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQL 422 (462)
Q Consensus 343 vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv 422 (462)
+| ++-+||+++ .|| .+++.++.+++.++++++|.++|||.|.+||++++++||+.+..
T Consensus 150 ad-fIKTsTG~~-------------~~g--------at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGt 207 (221)
T PRK00507 150 AD-FVKTSTGFS-------------TGG--------ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGT 207 (221)
T ss_pred CC-EEEcCCCCC-------------CCC--------CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEcc
Confidence 99 667888642 123 36788999999998899999999999999999999999999877
Q ss_pred chhh
Q 012517 423 YTAF 426 (462)
Q Consensus 423 ~Tal 426 (462)
.++.
T Consensus 208 S~~~ 211 (221)
T PRK00507 208 SAGV 211 (221)
T ss_pred CcHH
Confidence 6554
No 64
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.38 E-value=1.7e-11 Score=128.00 Aligned_cols=154 Identities=23% Similarity=0.249 Sum_probs=111.1
Q ss_pred CcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCC
Q 012517 284 GLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNP 363 (462)
Q Consensus 284 glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~ 363 (462)
+.++.++.+.+.++++.+++.. ..+||++|+.+.. ...++++.+...|+|+|+++|+.-+- . .....
T Consensus 191 ~~~~~~~~~~l~~~I~~lr~~~--------~~~pV~vK~~~~~---~~~~~a~~~~~~g~D~I~VsG~~Ggt-g-~~~~~ 257 (392)
T cd02808 191 PHHDIYSIEDLAQLIEDLREAT--------GGKPIGVKLVAGH---GEGDIAAGVAAAGADFITIDGAEGGT-G-AAPLT 257 (392)
T ss_pred CCCCCCCHHHHHHHHHHHHHhC--------CCceEEEEECCCC---CHHHHHHHHHHcCCCEEEEeCCCCCC-C-CCccc
Confidence 3566777788899999998863 2389999999864 34577888888889999999974211 0 00000
Q ss_pred cccccCCCCCCcCccchHHHHHHHHHhc-----CCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhc---------
Q 012517 364 VAKETGGLSGKPLLSLSNNILKEMYLLT-----RGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYG--------- 429 (462)
Q Consensus 364 ~~~~~GGlSG~~l~~~al~~v~~i~~~~-----~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~--------- 429 (462)
.. ...|+ | ....+.++++.+ ..++|||++|||.++.|+.++|.+|||+|+++|++++.
T Consensus 258 ~~-~~~g~---p----t~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c 329 (392)
T cd02808 258 FI-DHVGL---P----TELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKC 329 (392)
T ss_pred cc-ccCCc---c----HHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhc
Confidence 00 11122 2 223444444433 24699999999999999999999999999999999852
Q ss_pred ------------------------CC----ChHHHHHHHHHHHHHHcCCCCHHHhhc
Q 012517 430 ------------------------GP----ALIPQIKAELAECLERDGFKSIIEAVG 458 (462)
Q Consensus 430 ------------------------GP----~~i~~i~~~L~~~l~~~G~~si~e~~G 458 (462)
|. .+++.++++|+..|...|+.|++|+.-
T Consensus 330 ~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~ 386 (392)
T cd02808 330 HTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGR 386 (392)
T ss_pred CCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCH
Confidence 11 356788999999999999999998754
No 65
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.37 E-value=7.1e-11 Score=108.95 Aligned_cols=189 Identities=20% Similarity=0.213 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCC
Q 012517 146 DKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSS 225 (462)
Q Consensus 146 dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~ 225 (462)
+...+..+.+.+.|++++++++....+..-+... . +....+.+..
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~-------------------~---~~~~~~~~~~------------- 56 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDD-------------------K---EVLKEVAAET------------- 56 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCcc-------------------c---cHHHHHHhhc-------------
Confidence 4667888899999999999998876654211100 0 1222222110
Q ss_pred CCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHH
Q 012517 226 SPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAAR 305 (462)
Q Consensus 226 ~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~ 305 (462)
..++++++..+. ..+.....++.++.+. +|+|++|.++|+. ++.+.++++++++..
T Consensus 57 -------------~~~~~~~~~~~~-~~~~~~~~a~~~~~~g--~d~v~l~~~~~~~--------~~~~~~~~~~i~~~~ 112 (200)
T cd04722 57 -------------DLPLGVQLAIND-AAAAVDIAAAAARAAG--ADGVEIHGAVGYL--------AREDLELIRELREAV 112 (200)
T ss_pred -------------CCcEEEEEccCC-chhhhhHHHHHHHHcC--CCEEEEeccCCcH--------HHHHHHHHHHHHHhc
Confidence 136888886642 1121112223333333 9999999999864 355677888887652
Q ss_pred HhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHH
Q 012517 306 DEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILK 385 (462)
Q Consensus 306 ~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~ 385 (462)
.+.|+++|+.++.+.++. .+.+.|+|.|.+.|....... - .. .+.....+.
T Consensus 113 --------~~~~v~~~~~~~~~~~~~-----~~~~~g~d~i~~~~~~~~~~~-------------~-~~--~~~~~~~~~ 163 (200)
T cd04722 113 --------PDVKVVVKLSPTGELAAA-----AAEEAGVDEVGLGNGGGGGGG-------------R-DA--VPIADLLLI 163 (200)
T ss_pred --------CCceEEEEECCCCccchh-----hHHHcCCCEEEEcCCcCCCCC-------------c-cC--chhHHHHHH
Confidence 268999999986543221 167889999999887532110 0 00 011234455
Q ss_pred HHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 012517 386 EMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 386 ~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~T 424 (462)
.+++.. ++||++.|||++++++.+++++|||.|+++|
T Consensus 164 ~~~~~~--~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 164 LAKRGS--KVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HHHhcC--CCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 556655 7999999999999999999999999999986
No 66
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=99.29 E-value=1.4e-09 Score=107.35 Aligned_cols=120 Identities=24% Similarity=0.343 Sum_probs=95.9
Q ss_pred CCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC
Q 012517 314 GPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG 393 (462)
Q Consensus 314 ~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~ 393 (462)
++.||+||=-- +- +=|..+.++|++|||++|..-...|. -+.+.+.+.++-+++.+
T Consensus 222 T~LPIvvKGil--t~----eDA~~Ave~G~~GIIVSNHGgRQlD~------------------vpAtI~~L~Evv~aV~~ 277 (363)
T KOG0538|consen 222 TKLPIVVKGVL--TG----EDARKAVEAGVAGIIVSNHGGRQLDY------------------VPATIEALPEVVKAVEG 277 (363)
T ss_pred CcCCeEEEeec--cc----HHHHHHHHhCCceEEEeCCCccccCc------------------ccchHHHHHHHHHHhcC
Confidence 57899999643 22 33678889999999999986322121 13477899999999999
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh----cCCC----hHHHHHHHHHHHHHHcCCCCHHHhh
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY----GGPA----LIPQIKAELAECLERDGFKSIIEAV 457 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~----~GP~----~i~~i~~~L~~~l~~~G~~si~e~~ 457 (462)
++|++.-|||+++.|+.+++..||..|-+++.++| +|-. .+.-+++++.-.|.--|+.|+.|+-
T Consensus 278 ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~sv~ei~ 349 (363)
T KOG0538|consen 278 RIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFELTMALSGCRSVKEIT 349 (363)
T ss_pred ceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHHHHHHHHhCCCchhhhC
Confidence 99999999999999999999999999999999987 3433 3444556677778999999999975
No 67
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.29 E-value=1e-09 Score=111.97 Aligned_cols=247 Identities=21% Similarity=0.268 Sum_probs=151.7
Q ss_pred CCCCCC--CCCCCCccEEEcC-eeeCCcEEeCC-CCCCCHHHHHHHHcCC-ccEEEecccccCCCCCCCCCceeeecCCC
Q 012517 114 WVPREK--RPDPAILGLEVWG-RKFSNPLGLAA-GFDKNAEAVEGLLGLG-FGFVEVGSVTPVPQEGNPKPRIFRLRQEG 188 (462)
Q Consensus 114 ~~p~~~--~~~~~~L~v~v~G-l~f~NPiglAA-G~dk~~e~~~~l~~lG-fG~VevgtvT~~pq~GNp~PR~frl~~d~ 188 (462)
++|... .+++.+|++++.+ +.++.||..|+ ..-.+.+....+++.| +|++- +..++
T Consensus 9 l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~-~~~~~------------------ 69 (325)
T cd00381 9 LVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIH-RNMSI------------------ 69 (325)
T ss_pred EeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEe-CCCCH------------------
Confidence 345432 3456789999998 99999998776 2356778888888877 57642 21111
Q ss_pred cccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHc-
Q 012517 189 AIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLS- 267 (462)
Q Consensus 189 a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~- 267 (462)
+...+.+++... ...++++++. +++ +.+.++.+.
T Consensus 70 -------------~~~~~~i~~vk~-------------------------~l~v~~~~~~---~~~----~~~~~~~l~e 104 (325)
T cd00381 70 -------------EEQAEEVRKVKG-------------------------RLLVGAAVGT---RED----DKERAEALVE 104 (325)
T ss_pred -------------HHHHHHHHHhcc-------------------------CceEEEecCC---Chh----HHHHHHHHHh
Confidence 122222222111 0135556553 232 222333333
Q ss_pred ccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEE
Q 012517 268 QYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLI 347 (462)
Q Consensus 268 ~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIi 347 (462)
..+|+|++|++.-+. +.+.++++.+++.. .+.||++ .+.. -.+.++.+.++|+|+|+
T Consensus 105 agv~~I~vd~~~G~~---------~~~~~~i~~ik~~~--------p~v~Vi~---G~v~---t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 105 AGVDVIVIDSAHGHS---------VYVIEMIKFIKKKY--------PNVDVIA---GNVV---TAEAARDLIDAGADGVK 161 (325)
T ss_pred cCCCEEEEECCCCCc---------HHHHHHHHHHHHHC--------CCceEEE---CCCC---CHHHHHHHHhcCCCEEE
Confidence 349999999854221 34566777776541 2467766 3332 24567888899999999
Q ss_pred EecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC-CccEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 348 ISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG-KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 348 vsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~-~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
++.+.-. . ... ....|+ |.| .+..+.++.+.... ++|||+.|||.++.|+.+++.+||+.||++|.|
T Consensus 162 vg~g~G~-~--~~t---~~~~g~--g~p----~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~f 229 (325)
T cd00381 162 VGIGPGS-I--CTT---RIVTGV--GVP----QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLL 229 (325)
T ss_pred ECCCCCc-C--ccc---ceeCCC--CCC----HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchh
Confidence 8532100 0 000 001111 333 23445555544421 599999999999999999999999999998887
Q ss_pred hh-------------------------------------------------------cCC--ChHHHHHHHHHHHHHHcC
Q 012517 427 AY-------------------------------------------------------GGP--ALIPQIKAELAECLERDG 449 (462)
Q Consensus 427 i~-------------------------------------------------------~GP--~~i~~i~~~L~~~l~~~G 449 (462)
.- .|+ +++.++..+|+.-|.--|
T Consensus 230 a~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G 309 (325)
T cd00381 230 AGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCG 309 (325)
T ss_pred cccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcC
Confidence 42 111 356778888888999999
Q ss_pred CCCHHHhhcc
Q 012517 450 FKSIIEAVGA 459 (462)
Q Consensus 450 ~~si~e~~G~ 459 (462)
++|+.|+.-.
T Consensus 310 ~~~l~~~~~~ 319 (325)
T cd00381 310 AKSLKELQEK 319 (325)
T ss_pred CCcHHHHHhc
Confidence 9999999754
No 68
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.26 E-value=3.6e-10 Score=116.86 Aligned_cols=275 Identities=16% Similarity=0.199 Sum_probs=147.7
Q ss_pred CCCCCccEEEcCeeeCCcEEeCC-CCCCCHHHHHHHHcCC-ccEEEecccccCCCCCCCCCceeeecCCCc-----cccc
Q 012517 121 PDPAILGLEVWGRKFSNPLGLAA-GFDKNAEAVEGLLGLG-FGFVEVGSVTPVPQEGNPKPRIFRLRQEGA-----IINR 193 (462)
Q Consensus 121 ~~~~~L~v~v~Gl~f~NPiglAA-G~dk~~e~~~~l~~lG-fG~VevgtvT~~pq~GNp~PR~frl~~d~a-----~iN~ 193 (462)
.++.+|+..+.+++|+.||..++ ..-.+.+....+.++| +|++..+++.- ...++.|..-.+..-+. .+..
T Consensus 32 ~~dvdls~~~~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~~--~~~~~e~l~~qi~~~~~~~~~~~~~~ 109 (368)
T PRK08649 32 PEDVSTSWQIDAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLWT--RYEDPEPILDEIASLGKDEATRLMQE 109 (368)
T ss_pred HHHceeeeeecceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeeccccc--cCCCHHHHHHHHHhcCcHHHHHHHHH
Confidence 46778999999999999999887 3456788888888888 58887444220 00111111100100000 0000
Q ss_pred CCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEE
Q 012517 194 CGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYL 273 (462)
Q Consensus 194 ~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~l 273 (462)
++......+.+.+++++... ..+.+.+.- ++....++++.+.... +|+|
T Consensus 110 ~~~~P~~p~l~~~iv~~~~~--------------------------~~V~v~vr~---~~~~~~e~a~~l~eaG--vd~I 158 (368)
T PRK08649 110 LYAEPIKPELITERIAEIRD--------------------------AGVIVAVSL---SPQRAQELAPTVVEAG--VDLF 158 (368)
T ss_pred hhcCCCCHHHHHHHHHHHHh--------------------------CeEEEEEec---CCcCHHHHHHHHHHCC--CCEE
Confidence 11111112233333332211 012222221 2332234555544443 9999
Q ss_pred EEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCc
Q 012517 274 VINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTI 353 (462)
Q Consensus 274 eiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~ 353 (462)
++.....-+. . ..+......+.+.+++ .++||++. +.. . .+.++.+.+.|+|+|.+...-
T Consensus 159 ~vhgrt~~~~-h--~~~~~~~~~i~~~ik~----------~~ipVIaG---~V~--t-~e~A~~l~~aGAD~V~VG~G~- 218 (368)
T PRK08649 159 VIQGTVVSAE-H--VSKEGEPLNLKEFIYE----------LDVPVIVG---GCV--T-YTTALHLMRTGAAGVLVGIGP- 218 (368)
T ss_pred EEeccchhhh-c--cCCcCCHHHHHHHHHH----------CCCCEEEe---CCC--C-HHHHHHHHHcCCCEEEECCCC-
Confidence 9975221000 0 0000123344444332 26899882 222 1 345666777999999875321
Q ss_pred cCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHh-------c-CCCccEEEecCCCCHHHHHHHHHhCCCEEEEchh
Q 012517 354 SRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLL-------T-RGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 354 ~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~-------~-~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Ta 425 (462)
+.. .. .....| .|-|. +..+.++++. + ..++|||+.|||.++.|+.+.|.+|||.||++|.
T Consensus 219 Gs~--~~---t~~~~g--~g~p~----~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~ 287 (368)
T PRK08649 219 GAA--CT---SRGVLG--IGVPM----ATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSP 287 (368)
T ss_pred CcC--CC---CcccCC--CCcCH----HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccch
Confidence 110 00 000111 12221 2233333221 1 1259999999999999999999999999999999
Q ss_pred hhh------------------------------cCC--ChHH----------HHHHHHHHHHHHcCCCCHHHhhcc
Q 012517 426 FAY------------------------------GGP--ALIP----------QIKAELAECLERDGFKSIIEAVGA 459 (462)
Q Consensus 426 li~------------------------------~GP--~~i~----------~i~~~L~~~l~~~G~~si~e~~G~ 459 (462)
|.. .|| +++. ++.-+|+.-|.--|++++.|+.-.
T Consensus 288 fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~ 363 (368)
T PRK08649 288 LARAAEAPGRGWHWGMAAPHPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKV 363 (368)
T ss_pred hcccccCCCcccccCcccCCCcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhc
Confidence 952 122 1223 777788999999999999999754
No 69
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.26 E-value=6.3e-10 Score=112.70 Aligned_cols=185 Identities=18% Similarity=0.269 Sum_probs=123.0
Q ss_pred eeCCcEEeCC-CCCCCHHHHHHHHcCC-ccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHh
Q 012517 134 KFSNPLGLAA-GFDKNAEAVEGLLGLG-FGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQ 211 (462)
Q Consensus 134 ~f~NPiglAA-G~dk~~e~~~~l~~lG-fG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~ 211 (462)
.++-||..|+ ++-.+.+...+..+.| +|++-.+..++ +-++...+.+++.
T Consensus 9 gi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~----------------------------~~l~~~i~~~~~~ 60 (307)
T TIGR03151 9 GIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPP----------------------------DVVRKEIRKVKEL 60 (307)
T ss_pred CCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCH----------------------------HHHHHHHHHHHHh
Confidence 3457888776 4456789998888776 88765442110 1122333333321
Q ss_pred hccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCc
Q 012517 212 HGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGR 291 (462)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~ 291 (462)
. ..|+++|+... ++. .++.++.+.. ..++.+.++...|
T Consensus 61 t--------------------------~~pfgvn~~~~--~~~-~~~~~~~~~~--~~v~~v~~~~g~p----------- 98 (307)
T TIGR03151 61 T--------------------------DKPFGVNIMLL--SPF-VDELVDLVIE--EKVPVVTTGAGNP----------- 98 (307)
T ss_pred c--------------------------CCCcEEeeecC--CCC-HHHHHHHHHh--CCCCEEEEcCCCc-----------
Confidence 0 13789998652 221 1233333322 2388888765544
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCC
Q 012517 292 KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGL 371 (462)
Q Consensus 292 ~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGl 371 (462)
.++++.+++. ...++..++. .+.++.+++.|+|+|++.+. +.||.
T Consensus 99 ---~~~i~~lk~~----------g~~v~~~v~s-------~~~a~~a~~~GaD~Ivv~g~---------------eagGh 143 (307)
T TIGR03151 99 ---GKYIPRLKEN----------GVKVIPVVAS-------VALAKRMEKAGADAVIAEGM---------------ESGGH 143 (307)
T ss_pred ---HHHHHHHHHc----------CCEEEEEcCC-------HHHHHHHHHcCCCEEEEECc---------------ccCCC
Confidence 1456666542 4677766632 35678899999999999765 24555
Q ss_pred CCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 372 SGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 372 SG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
.|.. ....++.++++.+ ++|||+.|||.+++|+.+++.+||+.||++|.|+.
T Consensus 144 ~g~~---~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 144 IGEL---TTMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred CCCC---cHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 5432 2578899999988 69999999999999999999999999999999986
No 70
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.25 E-value=1.9e-10 Score=118.32 Aligned_cols=107 Identities=32% Similarity=0.385 Sum_probs=89.6
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
+..+-+.|+|+|+++|..- |- ..+|.| +.+.+.++++.++++++||+.|||+++.|+.++|.
T Consensus 232 ~~~a~~tg~~~I~vsnhgg-rq----------lD~g~s-------t~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlA 293 (360)
T COG1304 232 AAGAGGTGADGIEVSNHGG-RQ----------LDWGIS-------TADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALA 293 (360)
T ss_pred HHhhccCCceEEEEEcCCC-cc----------ccCCCC-------hHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHH
Confidence 4556678999999999853 21 235544 77899999999988899999999999999999999
Q ss_pred hCCCEEEEchhhhh----cCC----ChHHHHHHHHHHHHHHcCCCCHHHhhcc
Q 012517 415 AGATLVQLYTAFAY----GGP----ALIPQIKAELAECLERDGFKSIIEAVGA 459 (462)
Q Consensus 415 aGAd~Vqv~Tali~----~GP----~~i~~i~~~L~~~l~~~G~~si~e~~G~ 459 (462)
.||++|.+++.++| .|. .+++-|++||+..|.-.|.+||+|+...
T Consensus 294 LGA~~v~igrp~L~~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~ 346 (360)
T COG1304 294 LGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRV 346 (360)
T ss_pred hCCchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 99999999999987 232 2567788899999999999999999764
No 71
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.22 E-value=1.4e-09 Score=112.44 Aligned_cols=278 Identities=18% Similarity=0.207 Sum_probs=147.7
Q ss_pred CCCCCC--CCCCCCccEEEcCeeeCCcEEeCC--CCCCCHHHHHHHHcCCc-cEEEecccccCCCCCCCCCceeeecC--
Q 012517 114 WVPREK--RPDPAILGLEVWGRKFSNPLGLAA--GFDKNAEAVEGLLGLGF-GFVEVGSVTPVPQEGNPKPRIFRLRQ-- 186 (462)
Q Consensus 114 ~~p~~~--~~~~~~L~v~v~Gl~f~NPiglAA--G~dk~~e~~~~l~~lGf-G~VevgtvT~~pq~GNp~PR~frl~~-- 186 (462)
++|..+ .+++.+++..+.+++|++||.+|+ |+ .|...-..+.++|. |+|-...+.-. .-++.|.+..+..
T Consensus 20 ~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagV-td~~fr~~~~~~Galgvvsaegl~~~--~~~~~~~~~QI~g~~ 96 (369)
T TIGR01304 20 VVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDAL-VSPEFAIELGELGGLGVLNLEGLWGR--HEDPDPAIAKIAEAY 96 (369)
T ss_pred EcCCCCCCChhhccceeEEcceecCCceeecCCCcc-cCHHHHHHHHHcCCcccccchHHHhc--CCCHHHHHHHHhhcC
Confidence 577654 344567888889999999999886 43 45566666788886 77433222111 1222333322211
Q ss_pred -C----C--cccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHH
Q 012517 187 -E----G--AIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADY 259 (462)
Q Consensus 187 -d----~--a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy 259 (462)
+ + .++..+++.....+.+.+++++.... ...+.+.+ ++....++
T Consensus 97 ~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a------------------------~VtvkiRl-----~~~~~~e~ 147 (369)
T TIGR01304 97 EEGDQAAATRLLQELHAAPLKPELLGERIAEVRDS------------------------GVITAVRV-----SPQNAREI 147 (369)
T ss_pred CChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhc------------------------ceEEEEec-----CCcCHHHH
Confidence 1 0 11222333333344444444433210 01233333 23333466
Q ss_pred HHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHH
Q 012517 260 VQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAV 339 (462)
Q Consensus 260 ~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~ 339 (462)
++.+...+ +|.|.+.-..-... . ........++.+.++ . .++||++ -+.. . .+.+..+.
T Consensus 148 a~~l~eAG--ad~I~ihgrt~~q~-~--~sg~~~p~~l~~~i~-~---------~~IPVI~---G~V~--t-~e~A~~~~ 206 (369)
T TIGR01304 148 APIVVKAG--ADLLVIQGTLVSAE-H--VSTSGEPLNLKEFIG-E---------LDVPVIA---GGVN--D-YTTALHLM 206 (369)
T ss_pred HHHHHHCC--CCEEEEeccchhhh-c--cCCCCCHHHHHHHHH-H---------CCCCEEE---eCCC--C-HHHHHHHH
Confidence 66665555 99999862110000 0 000011223333222 1 2689987 2222 1 23456666
Q ss_pred HcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHH-------HHhcCC-CccEEEecCCCCHHHHHH
Q 012517 340 ALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEM-------YLLTRG-KIPLIGCGGISSGEDAYR 411 (462)
Q Consensus 340 ~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i-------~~~~~~-~ipIIg~GGI~s~~dA~e 411 (462)
+.|+|+|++.++....... ..| .|.| ....+.++ .+..++ .+|||+.|||.++.|+.+
T Consensus 207 ~aGaDgV~~G~gg~~~~~~--------~lg--~~~p----~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~k 272 (369)
T TIGR01304 207 RTGAAGVIVGPGGANTTRL--------VLG--IEVP----MATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVK 272 (369)
T ss_pred HcCCCEEEECCCCCccccc--------ccC--CCCC----HHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHH
Confidence 7999999855332110000 011 1222 11222322 223332 499999999999999999
Q ss_pred HHHhCCCEEEEchhhhh------cCCCh-------------------------HHH--------------HHHHHHHHHH
Q 012517 412 KIRAGATLVQLYTAFAY------GGPAL-------------------------IPQ--------------IKAELAECLE 446 (462)
Q Consensus 412 ~i~aGAd~Vqv~Tali~------~GP~~-------------------------i~~--------------i~~~L~~~l~ 446 (462)
.|.+|||+||++|+|+. +|..| .++ +.-.|+.-|.
T Consensus 273 AlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~ 352 (369)
T TIGR01304 273 AIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMA 352 (369)
T ss_pred HHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHH
Confidence 99999999999999973 11111 233 3446778899
Q ss_pred HcCCCCHHHhhc
Q 012517 447 RDGFKSIIEAVG 458 (462)
Q Consensus 447 ~~G~~si~e~~G 458 (462)
..||.++.|+.-
T Consensus 353 ~~g~~~~~~~~~ 364 (369)
T TIGR01304 353 KCGYTDLKEFQK 364 (369)
T ss_pred HcCchhhhhhhh
Confidence 999999988754
No 72
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.17 E-value=4.9e-09 Score=107.24 Aligned_cols=207 Identities=20% Similarity=0.270 Sum_probs=120.3
Q ss_pred eeCCcEEeCC-CCCCCHHHHHHHHcCC-ccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHh
Q 012517 134 KFSNPLGLAA-GFDKNAEAVEGLLGLG-FGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQ 211 (462)
Q Consensus 134 ~f~NPiglAA-G~dk~~e~~~~l~~lG-fG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~ 211 (462)
.++-||..++ |.-.+.+...+..+.| +|++-.+..++ +.++...+++++.
T Consensus 9 gi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~----------------------------~~l~~~i~~~~~~ 60 (330)
T PF03060_consen 9 GIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTP----------------------------EQLREEIRKIRAL 60 (330)
T ss_dssp T-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSH----------------------------HHHHHHHHHHHHH
T ss_pred CCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccCh----------------------------HHHHHHHHHHHhh
Confidence 3567888776 5577888888888776 89886544432 2233334444432
Q ss_pred hccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHH-H--------HHHHH-----------HHHHc-ccC
Q 012517 212 HGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAA-A--------DYVQG-----------VHTLS-QYA 270 (462)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~-~--------dy~~~-----------~~~l~-~~a 270 (462)
- +.|++||+.-....+... + .+.+. ++.+. ...
T Consensus 61 t--------------------------~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (330)
T PF03060_consen 61 T--------------------------DKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKP 114 (330)
T ss_dssp ---------------------------SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--
T ss_pred c--------------------------cccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccce
Confidence 1 127899986543333221 0 11111 11111 125
Q ss_pred cEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEec
Q 012517 271 DYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISN 350 (462)
Q Consensus 271 D~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsN 350 (462)
+.+..-+..|. .++++.+++. .+.++..++. .+-++.+.+.|+|+||+-+
T Consensus 115 ~~v~~~~G~p~-------------~~~i~~l~~~----------gi~v~~~v~s-------~~~A~~a~~~G~D~iv~qG 164 (330)
T PF03060_consen 115 DVVSFGFGLPP-------------PEVIERLHAA----------GIKVIPQVTS-------VREARKAAKAGADAIVAQG 164 (330)
T ss_dssp SEEEEESSSC--------------HHHHHHHHHT----------T-EEEEEESS-------HHHHHHHHHTT-SEEEEE-
T ss_pred EEEEeecccch-------------HHHHHHHHHc----------CCccccccCC-------HHHHHHhhhcCCCEEEEec
Confidence 67777776652 3555665542 6788888863 3447788999999999874
Q ss_pred CCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcC
Q 012517 351 TTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGG 430 (462)
Q Consensus 351 Tt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~G 430 (462)
. +.||.-|..+- ....++.++++.+ ++|||+.|||.+++++..++..||+.||++|.|+..-
T Consensus 165 ~---------------eAGGH~g~~~~-~~~~L~~~v~~~~--~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~ 226 (330)
T PF03060_consen 165 P---------------EAGGHRGFEVG-STFSLLPQVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE 226 (330)
T ss_dssp T---------------TSSEE---SSG--HHHHHHHHHHH---SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTST
T ss_pred c---------------ccCCCCCcccc-ceeeHHHHHhhhc--CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecc
Confidence 3 46777773222 3567888999999 6999999999999999999999999999999998642
Q ss_pred C-ChHHHHHHHHH
Q 012517 431 P-ALIPQIKAELA 442 (462)
Q Consensus 431 P-~~i~~i~~~L~ 442 (462)
- ..-...|+.+.
T Consensus 227 Es~~~~~~K~~l~ 239 (330)
T PF03060_consen 227 ESGASDAYKQALV 239 (330)
T ss_dssp TS-S-HHHHHHHH
T ss_pred cccChHHHHHHHH
Confidence 1 23444444443
No 73
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.16 E-value=4.1e-09 Score=102.03 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=92.6
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
++++|+..+.. .+..+++++.+.++. +|+|.++-..| .++++.+++ .+.++++
T Consensus 55 ~~~v~~i~~~~-~~~~~~~~~~~~~~g--~d~v~l~~~~~--------------~~~~~~~~~----------~~i~~i~ 107 (236)
T cd04730 55 PFGVNLLVPSS-NPDFEALLEVALEEG--VPVVSFSFGPP--------------AEVVERLKA----------AGIKVIP 107 (236)
T ss_pred CeEEeEecCCC-CcCHHHHHHHHHhCC--CCEEEEcCCCC--------------HHHHHHHHH----------cCCEEEE
Confidence 46678766521 012336666666655 99999875411 233444432 2578888
Q ss_pred EecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe
Q 012517 321 KIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC 400 (462)
Q Consensus 321 Kispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~ 400 (462)
++.+. +.++.+.+.|+|+|++.+.. .||..+... ...++.++++++.+ ++||++.
T Consensus 108 ~v~~~-------~~~~~~~~~gad~i~~~~~~---------------~~G~~~~~~-~~~~~~i~~i~~~~--~~Pvi~~ 162 (236)
T cd04730 108 TVTSV-------EEARKAEAAGADALVAQGAE---------------AGGHRGTFD-IGTFALVPEVRDAV--DIPVIAA 162 (236)
T ss_pred eCCCH-------HHHHHHHHcCCCEEEEeCcC---------------CCCCCCccc-cCHHHHHHHHHHHh--CCCEEEE
Confidence 87531 33556777899999886531 122222211 23468889999888 6999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEchhhhhc
Q 012517 401 GGISSGEDAYRKIRAGATLVQLYTAFAYG 429 (462)
Q Consensus 401 GGI~s~~dA~e~i~aGAd~Vqv~Tali~~ 429 (462)
|||.+++|+.+++++|||.|+++|+++..
T Consensus 163 GGI~~~~~v~~~l~~GadgV~vgS~l~~~ 191 (236)
T cd04730 163 GGIADGRGIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred CCCCCHHHHHHHHHcCCcEEEEchhhhcC
Confidence 99999999999999999999999999863
No 74
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.16 E-value=1.2e-08 Score=106.20 Aligned_cols=146 Identities=24% Similarity=0.263 Sum_probs=93.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
.+++.++- +++ ..+.++.+.+ .+|+|.|..+-+|. +.+.++++.+++.. .+.+|+
T Consensus 143 ~v~aavg~---~~~----~~~~v~~lv~aGvDvI~iD~a~g~~---------~~~~~~v~~ik~~~--------p~~~vi 198 (404)
T PRK06843 143 RVGAAVSI---DID----TIERVEELVKAHVDILVIDSAHGHS---------TRIIELVKKIKTKY--------PNLDLI 198 (404)
T ss_pred EEEEEEeC---CHH----HHHHHHHHHhcCCCEEEEECCCCCC---------hhHHHHHHHHHhhC--------CCCcEE
Confidence 46777764 333 2233343333 59999998876552 34667777777642 356777
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE
Q 012517 320 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG 399 (462)
Q Consensus 320 vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg 399 (462)
++--.. .+-+..+.++|+|+|.+..+.-+.- .. .... |. |.|-. .++..++++.+.. ++|||+
T Consensus 199 ~g~V~T------~e~a~~l~~aGaD~I~vG~g~Gs~c---~t---r~~~-g~-g~p~l-tai~~v~~~~~~~--~vpVIA 261 (404)
T PRK06843 199 AGNIVT------KEAALDLISVGADCLKVGIGPGSIC---TT---RIVA-GV-GVPQI-TAICDVYEVCKNT--NICIIA 261 (404)
T ss_pred EEecCC------HHHHHHHHHcCCCEEEECCCCCcCC---cc---eeec-CC-CCChH-HHHHHHHHHHhhc--CCeEEE
Confidence 765332 3557778889999999876532100 00 0011 21 33311 1333445555544 699999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 400 CGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 400 ~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
-|||.++.|+.++|.+||++||+++.|.
T Consensus 262 dGGI~~~~Di~KALalGA~aVmvGs~~a 289 (404)
T PRK06843 262 DGGIRFSGDVVKAIAAGADSVMIGNLFA 289 (404)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEcceee
Confidence 9999999999999999999999999984
No 75
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.11 E-value=1.8e-09 Score=111.74 Aligned_cols=169 Identities=20% Similarity=0.325 Sum_probs=127.5
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHccc--CcEEEEeccCCCCC----C--cccccCchHHHHHHHHHHHHHHhhccC
Q 012517 240 GILGVNIGKNKTSEDAAADYVQGVHTLSQY--ADYLVINVSSPNTP----G--LRMLQGRKQLKDLVKKVQAARDEMQWG 311 (462)
Q Consensus 240 ~~lgvnig~nk~t~~~~~dy~~~~~~l~~~--aD~leiNvSsPnt~----g--lr~lq~~~~l~~ll~aV~~~~~~~~~~ 311 (462)
.++||+|..+ -++ ...++++.+.+- .|+|.||+.||..- | -..|.++..+.++|+++....
T Consensus 320 diFGVQlag~--~pd---t~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs------ 388 (614)
T KOG2333|consen 320 DIFGVQLAGS--KPD---TAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVS------ 388 (614)
T ss_pred cceeeEeccC--ChH---HHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhc------
Confidence 4899999876 344 445555555542 89999999999762 2 223556678889999887764
Q ss_pred CCCCCCEEEEecCCCChh--hHHHHHHHHH-HcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHH
Q 012517 312 EEGPPPLLVKIAPDLSKE--DLEDIAAVAV-ALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMY 388 (462)
Q Consensus 312 ~~~~~Pv~vKispdl~~~--~~~~ia~~~~-~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~ 388 (462)
..+||-|||....-+. -+.+++..+. +.|+++|+++...... - |+ +....+.|.++.
T Consensus 389 --~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQ--R------------YT----K~AnWdYi~e~a 448 (614)
T KOG2333|consen 389 --GDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQ--R------------YT----KSANWDYIEECA 448 (614)
T ss_pred --cCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhh--h------------hh----cccChHHHHHHH
Confidence 3679999999775432 3566777776 8999999998764221 0 11 122568888898
Q ss_pred HhcCCCccEEEecCCCCHHHHHHHHHhC--CCEEEEchhhhhcCCChHHHHHHH
Q 012517 389 LLTRGKIPLIGCGGISSGEDAYRKIRAG--ATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 389 ~~~~~~ipIIg~GGI~s~~dA~e~i~aG--Ad~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
+.+...+|+||+|.|.|++|=++.+..+ .+-|||+++.+.. |+++.+|++.
T Consensus 449 ~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIK-PWIFtEIkeq 501 (614)
T KOG2333|consen 449 DKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIK-PWIFTEIKEQ 501 (614)
T ss_pred HhcccCceeEecCccccHHHHHHHhhcCCCcceEEeecccccc-chHhhhhhhh
Confidence 8887569999999999999999999866 8999999999885 9999999874
No 76
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.08 E-value=3.7e-09 Score=103.66 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCc-ccccCc-hHHH-----HHHHHHHHHHHhhccCCCCCCCE--EEEe
Q 012517 252 SEDAAADYVQGVHTLSQYADYLVINVSSPNTPGL-RMLQGR-KQLK-----DLVKKVQAARDEMQWGEEGPPPL--LVKI 322 (462)
Q Consensus 252 t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~gl-r~lq~~-~~l~-----~ll~aV~~~~~~~~~~~~~~~Pv--~vKi 322 (462)
+.+ ++.+.++.+.+.+|+||+|++||+...- ...|.. +... ++++++++. .++|+ |+|+
T Consensus 16 ~~~---~~~~~~~~l~~~ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~---------~~~Pl~lM~y~ 83 (244)
T PRK13125 16 NVE---SFKEFIIGLVELVDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD---------VSVPIILMTYL 83 (244)
T ss_pred CHH---HHHHHHHHHHhhCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc---------CCCCEEEEEec
Confidence 556 4444455444449999999999998521 122222 1111 566666542 36786 5899
Q ss_pred cCCCChhhHHHHHHHHHHcCCcEEEEecCCc---cCC----------CC-----C-CCC------------C-c--cccc
Q 012517 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTI---SRP----------DP-----V-SKN------------P-V--AKET 368 (462)
Q Consensus 323 spdl~~~~~~~ia~~~~~~GvdgIivsNTt~---~r~----------~~-----~-~~~------------~-~--~~~~ 368 (462)
+|.. .+..++++.+.+.|+|+|++.-... ... +. + +.. . . ....
T Consensus 84 n~~~--~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 84 EDYV--DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred chhh--hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeC
Confidence 8832 3566777777778888877752110 000 00 0 000 0 0 0122
Q ss_pred CCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 369 GGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 369 GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
||. |..+.+...+.++++++..+ +.||+.-|||.+++++.+.+++|||.+-++|+++.
T Consensus 162 ~~~-g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 162 PAT-GVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCC-CCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 333 33455555678999999885 57999999999999999999999999999999974
No 77
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.07 E-value=9.2e-08 Score=96.73 Aligned_cols=235 Identities=19% Similarity=0.164 Sum_probs=147.6
Q ss_pred CCCCccEEEcC-----eeeCCcEEeCCCCC--CCHHHHHHHHcCC-ccEEEecccccCCCCCCCCCceeeecCCCccccc
Q 012517 122 DPAILGLEVWG-----RKFSNPLGLAAGFD--KNAEAVEGLLGLG-FGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINR 193 (462)
Q Consensus 122 ~~~~L~v~v~G-----l~f~NPiglAAG~d--k~~e~~~~l~~lG-fG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~ 193 (462)
.+.+|++++.. ++|.=||. ||.+| .+.++-..|++.| |+++ -+-.+
T Consensus 26 ~evdl~~~~~~~~~~~~~~~iPii-~AnMdtv~~~~mA~~la~~g~~~~i-Hk~~~------------------------ 79 (343)
T TIGR01305 26 ADVELERTFTFRNSKQTYSGVPII-AANMDTVGTFEMAAALSQHSIFTAI-HKHYS------------------------ 79 (343)
T ss_pred HHceeeEEEccccCCceeeCCceE-ecCCCcccCHHHHHHHHHCCCeEEE-eeCCC------------------------
Confidence 45688998873 47888986 55564 5778888888887 5554 11111
Q ss_pred CCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHc--ccCc
Q 012517 194 CGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLS--QYAD 271 (462)
Q Consensus 194 ~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~--~~aD 271 (462)
++.+++.+++...+. ...+.|++|- +++ ||-..-..+. ..+|
T Consensus 80 -------~e~~~~~v~~~~~~~-----------------------~~~~~vsvG~---~~~---d~er~~~L~~a~~~~d 123 (343)
T TIGR01305 80 -------VDEWKAFATNSSPDC-----------------------LQNVAVSSGS---SDN---DLEKMTSILEAVPQLK 123 (343)
T ss_pred -------HHHHHHHHHhhcccc-----------------------cceEEEEecc---CHH---HHHHHHHHHhcCCCCC
Confidence 334444443321110 1245667764 344 4433333333 3489
Q ss_pred EEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEe--
Q 012517 272 YLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIIS-- 349 (462)
Q Consensus 272 ~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivs-- 349 (462)
+|+|.++-=|. +...+.++++++.. .+ +.++|=.- .+ .+-++.+.++|+|+|.++
T Consensus 124 ~iviD~AhGhs---------~~~i~~ik~ir~~~--------p~-~~viaGNV-~T----~e~a~~Li~aGAD~ikVgiG 180 (343)
T TIGR01305 124 FICLDVANGYS---------EHFVEFVKLVREAF--------PE-HTIMAGNV-VT----GEMVEELILSGADIVKVGIG 180 (343)
T ss_pred EEEEECCCCcH---------HHHHHHHHHHHhhC--------CC-CeEEEecc-cC----HHHHHHHHHcCCCEEEEccc
Confidence 99998864221 44566677776542 23 44444321 22 355677888999999988
Q ss_pred ---cCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC-CccEEEecCCCCHHHHHHHHHhCCCEEEEchh
Q 012517 350 ---NTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG-KIPLIGCGGISSGEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 350 ---NTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~-~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Ta 425 (462)
|.+.... .| .|.| .+..+.++++...+ ++|||+-|||.++-|+.+.|.+|||+||+++-
T Consensus 181 pGSicttR~~-----------~G--vg~p----qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~l 243 (343)
T TIGR01305 181 PGSVCTTRTK-----------TG--VGYP----QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGM 243 (343)
T ss_pred CCCcccCcee-----------CC--CCcC----HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHh
Confidence 5442211 11 0111 45667777777655 79999999999999999999999999999966
Q ss_pred hh--------------------------------------------------hcCC--ChHHHHHHHHHHHHHHcCCCCH
Q 012517 426 FA--------------------------------------------------YGGP--ALIPQIKAELAECLERDGFKSI 453 (462)
Q Consensus 426 li--------------------------------------------------~~GP--~~i~~i~~~L~~~l~~~G~~si 453 (462)
|. |+|| +++.++..+|+.-|.--|.+++
T Consensus 244 lAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i 323 (343)
T TIGR01305 244 FAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKL 323 (343)
T ss_pred hhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcH
Confidence 52 1122 2456777788888888889999
Q ss_pred HHhhc
Q 012517 454 IEAVG 458 (462)
Q Consensus 454 ~e~~G 458 (462)
.|+.-
T Consensus 324 ~el~~ 328 (343)
T TIGR01305 324 KELSK 328 (343)
T ss_pred HHHHh
Confidence 99864
No 78
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.92 E-value=3.1e-08 Score=98.00 Aligned_cols=143 Identities=20% Similarity=0.284 Sum_probs=101.2
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC--------------CChhhHHHH
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD--------------LSKEDLEDI 334 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd--------------l~~~~~~~i 334 (462)
.+|.+++|-. .+++++.+.++++...+ ..+++.+++... .+..+..++
T Consensus 96 G~~~vvigs~--------~~~~~~~~~~~~~~~~~----------~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~ 157 (258)
T PRK01033 96 GVEKVSINTA--------ALEDPDLITEAAERFGS----------QSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLEL 157 (258)
T ss_pred CCCEEEEChH--------HhcCHHHHHHHHHHhCC----------CcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHH
Confidence 4899999832 24556666666655421 134555554322 122357899
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHH-
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKI- 413 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i- 413 (462)
++.+.+.|++.|++++-+ ..|.++|+ .++.++++++.+ ++|||++|||.|.+|+.+++
T Consensus 158 ~~~~~~~g~~~ii~~~i~--------------~~G~~~G~-----d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~ 216 (258)
T PRK01033 158 AKEYEALGAGEILLNSID--------------RDGTMKGY-----DLELLKSFRNAL--KIPLIALGGAGSLDDIVEAIL 216 (258)
T ss_pred HHHHHHcCCCEEEEEccC--------------CCCCcCCC-----CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHH
Confidence 999999999999998654 13556664 678889999987 79999999999999999999
Q ss_pred HhCCCEEEEchhhhhcCCChHHHH----HHHHHHHHHHcCCC
Q 012517 414 RAGATLVQLYTAFAYGGPALIPQI----KAELAECLERDGFK 451 (462)
Q Consensus 414 ~aGAd~Vqv~Tali~~GP~~i~~i----~~~L~~~l~~~G~~ 451 (462)
..|++.|.++++|.|.|-. +.++ ...++++|...|+.
T Consensus 217 ~~GvdgVivg~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
T PRK01033 217 NLGADAAAAGSLFVFKGVY-KAVLINYPNGDEKEELLKAGIP 257 (258)
T ss_pred HCCCCEEEEcceeeeCccc-ccccccccHHHHHHHHHHcCCC
Confidence 7999999999999886533 3333 33445566666543
No 79
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.88 E-value=1.5e-07 Score=101.44 Aligned_cols=145 Identities=18% Similarity=0.230 Sum_probs=94.7
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
.+|+.++-+ + |..+.++.+.+ .+|.|.+.. +| |.. ....++++++++.. .+.+|+
T Consensus 238 ~vgaavg~~---~----~~~~r~~~l~~ag~d~i~iD~--~~--g~~-----~~~~~~i~~ik~~~--------p~~~vi 293 (505)
T PLN02274 238 LVGAAIGTR---E----SDKERLEHLVKAGVDVVVLDS--SQ--GDS-----IYQLEMIKYIKKTY--------PELDVI 293 (505)
T ss_pred EEEEEEcCC---c----cHHHHHHHHHHcCCCEEEEeC--CC--CCc-----HHHHHHHHHHHHhC--------CCCcEE
Confidence 577777642 2 33445555554 599999876 33 211 22346677777542 357777
Q ss_pred EE-ecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE
Q 012517 320 VK-IAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 320 vK-ispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII 398 (462)
++ ++. .+-+..+.++|+|+|.+++..-..- .. ...+| .|.|. ..+...+.++.+.. ++|||
T Consensus 294 ~g~v~t-------~e~a~~a~~aGaD~i~vg~g~G~~~--~t-----~~~~~-~g~~~-~~~i~~~~~~~~~~--~vpVI 355 (505)
T PLN02274 294 GGNVVT-------MYQAQNLIQAGVDGLRVGMGSGSIC--TT-----QEVCA-VGRGQ-ATAVYKVASIAAQH--GVPVI 355 (505)
T ss_pred EecCCC-------HHHHHHHHHcCcCEEEECCCCCccc--cC-----ccccc-cCCCc-ccHHHHHHHHHHhc--CCeEE
Confidence 76 432 3447788899999999986432110 00 01111 12221 12556677887776 69999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
+-|||.++.|+.++|.+||+.||++|.|.
T Consensus 356 adGGI~~~~di~kAla~GA~~V~vGs~~~ 384 (505)
T PLN02274 356 ADGGISNSGHIVKALTLGASTVMMGSFLA 384 (505)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEEchhhc
Confidence 99999999999999999999999999985
No 80
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.84 E-value=6e-07 Score=87.18 Aligned_cols=210 Identities=21% Similarity=0.210 Sum_probs=127.0
Q ss_pred EEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHH
Q 012517 129 EVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKR 207 (462)
Q Consensus 129 ~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~ 207 (462)
++.|.+|.+++.+..| |.....+.+.+...|.-.|+|-. +- .. +.+.+.+.+.+.
T Consensus 2 ~i~~~~~~SRl~~Gtgky~s~~~~~~ai~aSg~~ivTva~---rR-----------~~----------~~~~~~~~~~~~ 57 (248)
T cd04728 2 TIGGKTFSSRLLLGTGKYPSPAIMKEAIEASGAEIVTVAL---RR-----------VN----------IGDPGGESFLDL 57 (248)
T ss_pred eECCEEeecceEEecCCCCCHHHHHHHHHHhCCCEEEEEE---Ee-----------cc----------cCCCCcchHHhh
Confidence 5889999999999988 55555666667788988876532 11 10 001122233333
Q ss_pred HHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccC-CCCCCcc
Q 012517 208 LGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSS-PNTPGLR 286 (462)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSs-Pnt~glr 286 (462)
+.... ..+-.|-.+ +.|.+++--.++.++.+. .-|+|-+-+-. |.+
T Consensus 58 i~~~~---------------------------~~~lpNTaG-~~ta~eAv~~a~lare~~-~~~~iKlEVi~d~~~---- 104 (248)
T cd04728 58 LDKSG---------------------------YTLLPNTAG-CRTAEEAVRTARLAREAL-GTDWIKLEVIGDDKT---- 104 (248)
T ss_pred ccccC---------------------------CEECCCCCC-CCCHHHHHHHHHHHHHHh-CCCeEEEEEecCccc----
Confidence 32110 012223222 235554434444444443 36888887743 322
Q ss_pred cccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCccc
Q 012517 287 MLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAK 366 (462)
Q Consensus 287 ~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~ 366 (462)
|+ ..+.+.+++.++..+ ..+-++.=+++| ...++.+.+.|++.| ...+.+
T Consensus 105 -Ll--pd~~~tv~aa~~L~~-------~Gf~vlpyc~dd------~~~ar~l~~~G~~~v----mPlg~p---------- 154 (248)
T cd04728 105 -LL--PDPIETLKAAEILVK-------EGFTVLPYCTDD------PVLAKRLEDAGCAAV----MPLGSP---------- 154 (248)
T ss_pred -cc--cCHHHHHHHHHHHHH-------CCCEEEEEeCCC------HHHHHHHHHcCCCEe----CCCCcC----------
Confidence 11 224455555555442 245555567766 357889999999988 111111
Q ss_pred ccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh-cCCC
Q 012517 367 ETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY-GGPA 432 (462)
Q Consensus 367 ~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~-~GP~ 432 (462)
-| ||..+. ..+.++.+++.. ++|||.-|||.+++||.++++.|||.|.++|++.. ++|.
T Consensus 155 -IG--sg~Gi~--~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~ 214 (248)
T cd04728 155 -IG--SGQGLL--NPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPV 214 (248)
T ss_pred -CC--CCCCCC--CHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHH
Confidence 11 232222 257788888875 79999999999999999999999999999999964 3454
No 81
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.84 E-value=4.4e-07 Score=93.08 Aligned_cols=249 Identities=20% Similarity=0.280 Sum_probs=139.8
Q ss_pred CCCccEEE-cCeeeCCcEEeCCCCC--CCHHHHHHHHcCC-ccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCc
Q 012517 123 PAILGLEV-WGRKFSNPLGLAAGFD--KNAEAVEGLLGLG-FGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNS 198 (462)
Q Consensus 123 ~~~L~v~v-~Gl~f~NPiglAAG~d--k~~e~~~~l~~lG-fG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn 198 (462)
+.++.+.+ .+++|+-||.-|+ +| .+.++...++++| +|++= ...++
T Consensus 23 dv~~~~~~~~~~~l~iPivsa~-MDtVte~~mAiama~~Gglgvih-~~~~~---------------------------- 72 (352)
T PF00478_consen 23 DVSLSTKLTRNITLKIPIVSAP-MDTVTESEMAIAMARLGGLGVIH-RNMSI---------------------------- 72 (352)
T ss_dssp G-BEEEESSTSEEESSSEEE-S-STTTSSHHHHHHHHHTTSEEEEE-SSSCH----------------------------
T ss_pred heECcccccCCEeecCceEecC-ccccchHHHHHHHHHhcCCceec-CCCCH----------------------------
Confidence 34444445 7999999998766 55 5778888888875 66651 11111
Q ss_pred hhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHc-ccCcEEEEec
Q 012517 199 EGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLS-QYADYLVINV 277 (462)
Q Consensus 199 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~-~~aD~leiNv 277 (462)
+-.....+++++........ . .....+++.++-+ ++ ..+.++.+. ..+|+|+|..
T Consensus 73 e~q~~~v~~vK~~~~~a~~d--------~---------~~~l~V~aavg~~---~~----~~er~~~L~~agvD~ivID~ 128 (352)
T PF00478_consen 73 EEQAEEVKKVKRYYPNASKD--------E---------KGRLLVAAAVGTR---DD----DFERAEALVEAGVDVIVIDS 128 (352)
T ss_dssp HHHHHHHHHHHTHHTTHHBH--------T---------TSCBCEEEEEESS---TC----HHHHHHHHHHTT-SEEEEE-
T ss_pred HHHHHHHhhhcccccccccc--------c---------cccceEEEEecCC---HH----HHHHHHHHHHcCCCEEEccc
Confidence 11122333343321111000 0 0123588888753 22 233333333 4699999986
Q ss_pred cCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCC
Q 012517 278 SSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPD 357 (462)
Q Consensus 278 SsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~ 357 (462)
+-=| .+.+.+.++.+++.. .+.||++- ++. ..+-++.+.++|+|+|.+.=.. +.
T Consensus 129 a~g~---------s~~~~~~ik~ik~~~--------~~~~viaG---NV~---T~e~a~~L~~aGad~vkVGiGp-Gs-- 182 (352)
T PF00478_consen 129 AHGH---------SEHVIDMIKKIKKKF--------PDVPVIAG---NVV---TYEGAKDLIDAGADAVKVGIGP-GS-- 182 (352)
T ss_dssp SSTT---------SHHHHHHHHHHHHHS--------TTSEEEEE---EE----SHHHHHHHHHTT-SEEEESSSS-ST--
T ss_pred cCcc---------HHHHHHHHHHHHHhC--------CCceEEec---ccC---CHHHHHHHHHcCCCEEEEeccC-Cc--
Confidence 4322 134556666666542 35788652 221 2456777889999999886221 00
Q ss_pred CCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh----------
Q 012517 358 PVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA---------- 427 (462)
Q Consensus 358 ~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali---------- 427 (462)
. ......-|. |.|. -.+..-+++.++.. .+|||+-|||.+.-|+.++|.+|||.||+++.|-
T Consensus 183 -i---CtTr~v~Gv-G~PQ-~tAv~~~a~~a~~~--~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~ 254 (352)
T PF00478_consen 183 -I---CTTREVTGV-GVPQ-LTAVYECAEAARDY--GVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVI 254 (352)
T ss_dssp -T---BHHHHHHSB-SCTH-HHHHHHHHHHHHCT--TSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEE
T ss_pred -c---ccccccccc-CCcH-HHHHHHHHHHhhhc--cCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceE
Confidence 0 000011111 2221 11334444555555 6999999999999999999999999999999874
Q ss_pred -----------------------------------------------hcCC--ChHHHHHHHHHHHHHHcCCCCHHHhhc
Q 012517 428 -----------------------------------------------YGGP--ALIPQIKAELAECLERDGFKSIIEAVG 458 (462)
Q Consensus 428 -----------------------------------------------~~GP--~~i~~i~~~L~~~l~~~G~~si~e~~G 458 (462)
|+|+ +++.++..+|+.-|.--|..||.|+.-
T Consensus 255 ~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~ 334 (352)
T PF00478_consen 255 YIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRK 334 (352)
T ss_dssp EETTEEEEEEEETTSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHH
T ss_pred EECCeEEEEecccccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHh
Confidence 1111 245677778888888889999988875
Q ss_pred c
Q 012517 459 A 459 (462)
Q Consensus 459 ~ 459 (462)
.
T Consensus 335 ~ 335 (352)
T PF00478_consen 335 K 335 (352)
T ss_dssp H
T ss_pred C
Confidence 3
No 82
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.84 E-value=8.5e-08 Score=93.69 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=90.4
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecC------------CCChhhHHHHHH
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAP------------DLSKEDLEDIAA 336 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKisp------------dl~~~~~~~ia~ 336 (462)
.+|.+.+|-.. +++++.+.++++.+... ..-+++-+|... +.+..+..++++
T Consensus 93 G~~~v~ig~~~--------~~~p~~~~~i~~~~~~~--------~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~ 156 (243)
T cd04731 93 GADKVSINSAA--------VENPELIREIAKRFGSQ--------CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAK 156 (243)
T ss_pred CCceEEECchh--------hhChHHHHHHHHHcCCC--------CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHH
Confidence 48999888543 34566666666654211 012333334322 233456788999
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHh-
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRA- 415 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~a- 415 (462)
.+.+.|+|.|++++.+.. |-..| ..++.++++.+.+ ++|||++|||.+++|+.+.++.
T Consensus 157 ~l~~~G~d~i~v~~i~~~--------------g~~~g-----~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~ 215 (243)
T cd04731 157 EVEELGAGEILLTSMDRD--------------GTKKG-----YDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEG 215 (243)
T ss_pred HHHHCCCCEEEEeccCCC--------------CCCCC-----CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhC
Confidence 999999999999874311 11122 1578889998887 7999999999999999999997
Q ss_pred CCCEEEEchhhhhcCCChHHHHH
Q 012517 416 GATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 416 GAd~Vqv~Tali~~GP~~i~~i~ 438 (462)
|||.|++++++.. |-.-+.+++
T Consensus 216 g~dgv~vg~al~~-~~~~~~~~~ 237 (243)
T cd04731 216 GADAALAASIFHF-GEYTIAELK 237 (243)
T ss_pred CCCEEEEeHHHHc-CCCCHHHHH
Confidence 9999999999954 433344443
No 83
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.82 E-value=1.2e-06 Score=88.81 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=111.4
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHc--ccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLS--QYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPL 318 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~--~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv 318 (462)
.+.|++|- +++ ||....+.+. ..+|+|+|.++-=|. +...+.++.|++.. .+.+|
T Consensus 98 ~~~vavG~---~~~---d~er~~~L~~~~~g~D~iviD~AhGhs---------~~~i~~ik~ik~~~--------P~~~v 154 (346)
T PRK05096 98 HVMVSTGT---SDA---DFEKTKQILALSPALNFICIDVANGYS---------EHFVQFVAKAREAW--------PDKTI 154 (346)
T ss_pred eEEEEecC---CHH---HHHHHHHHHhcCCCCCEEEEECCCCcH---------HHHHHHHHHHHHhC--------CCCcE
Confidence 46667764 344 4544444443 358999999864221 34556666666542 34555
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE
Q 012517 319 LVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 319 ~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII 398 (462)
+ ..++- ..+.++.+.++|+|+|.+.=..-+ .-.. . ..-|. |.| .-.+...+++.++.. ++|||
T Consensus 155 I---aGNV~---T~e~a~~Li~aGAD~vKVGIGpGS---iCtT-r---~vtGv-G~P-QltAV~~~a~~a~~~--gvpiI 217 (346)
T PRK05096 155 C---AGNVV---TGEMVEELILSGADIVKVGIGPGS---VCTT-R---VKTGV-GYP-QLSAVIECADAAHGL--GGQIV 217 (346)
T ss_pred E---Eeccc---CHHHHHHHHHcCCCEEEEcccCCc---cccC-c---ccccc-Chh-HHHHHHHHHHHHHHc--CCCEE
Confidence 3 34432 245677888999999976421100 0000 0 01111 222 112334444555555 68999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhhh--------------------------------------------------h
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAFA--------------------------------------------------Y 428 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tali--------------------------------------------------~ 428 (462)
+-|||.+.-|+.+.|.+|||.||+++-|- |
T Consensus 218 ADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~~~~Vp~ 297 (346)
T PRK05096 218 SDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPL 297 (346)
T ss_pred ecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccccccCceEEecc
Confidence 99999999999999999999999999872 1
Q ss_pred cCC--ChHHHHHHHHHHHHHHcCCCCHHHhhc
Q 012517 429 GGP--ALIPQIKAELAECLERDGFKSIIEAVG 458 (462)
Q Consensus 429 ~GP--~~i~~i~~~L~~~l~~~G~~si~e~~G 458 (462)
+|| +++.++..+|+.-|.--|.++|.|+.-
T Consensus 298 kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~ 329 (346)
T PRK05096 298 RGPVENTARDILGGLRSACTYVGASRLKELTK 329 (346)
T ss_pred CCcHHHHHHHHHHHHHHHHcccCcCcHHHHHh
Confidence 222 356777788888888889999999864
No 84
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.80 E-value=5.8e-08 Score=95.06 Aligned_cols=133 Identities=16% Similarity=0.163 Sum_probs=95.8
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCE---EEEecCC-CChhhHHHHHHHHHHcCCc
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPL---LVKIAPD-LSKEDLEDIAAVAVALRLD 344 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv---~vKispd-l~~~~~~~ia~~~~~~Gvd 344 (462)
.||.+.++-. .+++++.+.++++.+.+.. ...+++ .+|+..- .+..+..++++.+.+.|++
T Consensus 97 Ga~kvviGs~--------~l~~p~l~~~i~~~~~~~i-------~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~ 161 (241)
T PRK14024 97 GCARVNIGTA--------ALENPEWCARVIAEHGDRV-------AVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCS 161 (241)
T ss_pred CCCEEEECch--------HhCCHHHHHHHHHHhhhhE-------EEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCC
Confidence 4888777643 3567788888887764321 012233 4554311 1223678899999999999
Q ss_pred EEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH---hCCCEEE
Q 012517 345 GLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR---AGATLVQ 421 (462)
Q Consensus 345 gIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~---aGAd~Vq 421 (462)
.|++++.+. .|.++|+ .++.++++.+.+ ++|||++|||.|.+|+.+..+ .||+.|+
T Consensus 162 ~iiv~~~~~--------------~g~~~G~-----d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ 220 (241)
T PRK14024 162 RYVVTDVTK--------------DGTLTGP-----NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAI 220 (241)
T ss_pred EEEEEeecC--------------CCCccCC-----CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEE
Confidence 999997652 3455664 478889999987 799999999999999999864 5999999
Q ss_pred EchhhhhcCCChHHHHH
Q 012517 422 LYTAFAYGGPALIPQIK 438 (462)
Q Consensus 422 v~Tali~~GP~~i~~i~ 438 (462)
+++++. .|+--+.+++
T Consensus 221 igra~~-~g~~~~~~~~ 236 (241)
T PRK14024 221 VGKALY-AGAFTLPEAL 236 (241)
T ss_pred EeHHHH-cCCCCHHHHH
Confidence 999995 5666555544
No 85
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.74 E-value=2e-06 Score=83.65 Aligned_cols=210 Identities=22% Similarity=0.212 Sum_probs=126.0
Q ss_pred EEEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHH
Q 012517 128 LEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAK 206 (462)
Q Consensus 128 v~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~ 206 (462)
..+.|.+|.+++.+..| +.....+.+.+...|.-.|+|-. + |...+. +-+.+.+
T Consensus 2 l~i~~~~~~SRl~~Gtgky~s~~~~~~ai~asg~~ivTval---r-----------R~~~~~-----------~~~~~~~ 56 (250)
T PRK00208 2 LTIAGKTFSSRLLLGTGKYPSPQVMQEAIEASGAEIVTVAL---R-----------RVNLGQ-----------GGDNLLD 56 (250)
T ss_pred cEECCEEeeccceEecCCCCCHHHHHHHHHHhCCCeEEEEE---E-----------eecCCC-----------CcchHHh
Confidence 46899999999999988 45555566667788888876532 1 111000 1122333
Q ss_pred HHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccC-CCCCCc
Q 012517 207 RLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSS-PNTPGL 285 (462)
Q Consensus 207 ~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSs-Pnt~gl 285 (462)
.|.... ..+-.|-.+ +.|.+++--.++.++.+. .-|+|-+-+-. |.+.
T Consensus 57 ~i~~~~---------------------------~~~lpNTaG-~~ta~eAv~~a~lare~~-~~~~iKlEVi~d~~~l-- 105 (250)
T PRK00208 57 LLPPLG---------------------------VTLLPNTAG-CRTAEEAVRTARLAREAL-GTNWIKLEVIGDDKTL-- 105 (250)
T ss_pred hccccC---------------------------CEECCCCCC-CCCHHHHHHHHHHHHHHh-CCCeEEEEEecCCCCC--
Confidence 332110 012223322 235554444444444443 25888777643 3321
Q ss_pred ccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcc
Q 012517 286 RMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVA 365 (462)
Q Consensus 286 r~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~ 365 (462)
+ ..+.+.+++.++..+ ..+-++-=+++| ...++.+.+.|++.| ...+.+
T Consensus 106 --l---pd~~~tv~aa~~L~~-------~Gf~vlpyc~~d------~~~ak~l~~~G~~~v----mPlg~p--------- 154 (250)
T PRK00208 106 --L---PDPIETLKAAEILVK-------EGFVVLPYCTDD------PVLAKRLEEAGCAAV----MPLGAP--------- 154 (250)
T ss_pred --C---cCHHHHHHHHHHHHH-------CCCEEEEEeCCC------HHHHHHHHHcCCCEe----CCCCcC---------
Confidence 1 224455555555442 245555467766 367888999999988 111111
Q ss_pred cccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh-cCCC
Q 012517 366 KETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY-GGPA 432 (462)
Q Consensus 366 ~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~-~GP~ 432 (462)
-| ||..+. ..+.++.+++.. ++|||.-|||.+++||.+.++.|||.|.++|++.. .+|.
T Consensus 155 --IG--sg~gi~--~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~ 214 (250)
T PRK00208 155 --IG--SGLGLL--NPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPV 214 (250)
T ss_pred --CC--CCCCCC--CHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHH
Confidence 11 333332 246688888875 79999999999999999999999999999999964 3353
No 86
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.73 E-value=8.3e-08 Score=98.34 Aligned_cols=81 Identities=30% Similarity=0.348 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCC-cCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHH
Q 012517 332 EDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGK-PLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAY 410 (462)
Q Consensus 332 ~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~-~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~ 410 (462)
...++.+++.|+|+||+-.. +.||..|. ...+-...++.++++.++. ||||+.|||.+++++.
T Consensus 137 ~~~A~~~~~~G~d~vI~~g~---------------eAGGH~g~~~~~~~t~~Lv~ev~~~~~~-iPViAAGGI~dg~~i~ 200 (336)
T COG2070 137 VREALKAERAGADAVIAQGA---------------EAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAAGGIADGRGIA 200 (336)
T ss_pred HHHHHHHHhCCCCEEEecCC---------------cCCCcCCCCCCCccHHHHHHHHHHHhcC-CCEEEecCccChHHHH
Confidence 45677788889998886533 56787774 2233456888999999932 9999999999999999
Q ss_pred HHHHhCCCEEEEchhhhh
Q 012517 411 RKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 411 e~i~aGAd~Vqv~Tali~ 428 (462)
.+++.||+.||++|.|+.
T Consensus 201 AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 201 AALALGADGVQMGTRFLA 218 (336)
T ss_pred HHHHhccHHHHhhhhhhc
Confidence 999999999999999985
No 87
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.73 E-value=9e-07 Score=94.30 Aligned_cols=125 Identities=22% Similarity=0.247 Sum_probs=80.6
Q ss_pred ccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEE
Q 012517 268 QYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLI 347 (462)
Q Consensus 268 ~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIi 347 (462)
..+|.|+|+.+-.|+ ..+.+.++++++.. .+.||+++-- .+ .+-++.+.++|+|+|.
T Consensus 235 aG~d~I~vd~a~g~~---------~~~~~~i~~i~~~~--------~~~~vi~G~v--~t----~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 235 AGVDVIVIDSSHGHS---------IYVIDSIKEIKKTY--------PDLDIIAGNV--AT----AEQAKALIDAGADGLR 291 (450)
T ss_pred hCCCEEEEECCCCcH---------hHHHHHHHHHHHhC--------CCCCEEEEeC--CC----HHHHHHHHHhCCCEEE
Confidence 359999999875433 23556666666531 3689988532 22 3456778889999998
Q ss_pred EecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC-CCccEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 348 ISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR-GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 348 vsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~-~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
++++.-+.- .. . ... |. |.| .+..+.++++... .++|||+.|||.++.|+.+.|.+||++||+++.|
T Consensus 292 vg~g~G~~~-~t---~--~~~-~~-g~p----~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~ 359 (450)
T TIGR01302 292 VGIGPGSIC-TT---R--IVA-GV-GVP----QITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLL 359 (450)
T ss_pred ECCCCCcCC-cc---c--eec-CC-Ccc----HHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 875321100 00 0 001 11 112 2234444443321 2699999999999999999999999999999998
Q ss_pred h
Q 012517 427 A 427 (462)
Q Consensus 427 i 427 (462)
.
T Consensus 360 a 360 (450)
T TIGR01302 360 A 360 (450)
T ss_pred h
Confidence 4
No 88
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.72 E-value=9.5e-07 Score=89.60 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=87.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
|+|||+...... +..++.++.+.... .+.+.+....|. . ++.+++ ..+.++.
T Consensus 57 PfGVnl~~~~~~-~~~~~~l~vi~e~~--v~~V~~~~G~P~--------------~-~~~lk~----------~Gi~v~~ 108 (320)
T cd04743 57 PWGVGILGFVDT-ELRAAQLAVVRAIK--PTFALIAGGRPD--------------Q-ARALEA----------IGISTYL 108 (320)
T ss_pred CeEEEEeccCCC-cchHHHHHHHHhcC--CcEEEEcCCChH--------------H-HHHHHH----------CCCEEEE
Confidence 799999431111 11234444443333 788877765542 1 234433 2678887
Q ss_pred EecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhc--------C
Q 012517 321 KIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLT--------R 392 (462)
Q Consensus 321 Kispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~--------~ 392 (462)
.++. ...++.+++.|+|+||+-+. +.||.-|+ +. +.-++.++.+.+ .
T Consensus 109 ~v~s-------~~~A~~a~~~GaD~vVaqG~---------------EAGGH~G~-~~--t~~L~~~v~~~l~~~~~~~~~ 163 (320)
T cd04743 109 HVPS-------PGLLKQFLENGARKFIFEGR---------------ECGGHVGP-RS--SFVLWESAIDALLAANGPDKA 163 (320)
T ss_pred EeCC-------HHHHHHHHHcCCCEEEEecC---------------cCcCCCCC-CC--chhhHHHHHHHHHHhhccccc
Confidence 7753 34578899999999998754 45676552 11 111222322222 1
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCC--------CEEEEchhhhh
Q 012517 393 GKIPLIGCGGISSGEDAYRKIRAGA--------TLVQLYTAFAY 428 (462)
Q Consensus 393 ~~ipIIg~GGI~s~~dA~e~i~aGA--------d~Vqv~Tali~ 428 (462)
.++|||+.|||.+++.+..++..|| +.|||+|.|+.
T Consensus 164 ~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~ 207 (320)
T cd04743 164 GKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLF 207 (320)
T ss_pred CCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhc
Confidence 2699999999999999999999988 79999999986
No 89
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.72 E-value=8.1e-07 Score=95.61 Aligned_cols=177 Identities=23% Similarity=0.281 Sum_probs=110.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
.+|+.++. +++ + .+.++.+.+ .+|+|+|+.+--+++ ...+.++++++.. .+.||+
T Consensus 231 ~Vgaavg~---~~~---~-~~~~~~l~~ag~d~i~id~a~G~s~---------~~~~~i~~ik~~~--------~~~~v~ 286 (495)
T PTZ00314 231 LVGAAIST---RPE---D-IERAAALIEAGVDVLVVDSSQGNSI---------YQIDMIKKLKSNY--------PHVDII 286 (495)
T ss_pred EEEEEECC---CHH---H-HHHHHHHHHCCCCEEEEecCCCCch---------HHHHHHHHHHhhC--------CCceEE
Confidence 46677764 333 2 344444444 599999998633322 2345667776542 256777
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE
Q 012517 320 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG 399 (462)
Q Consensus 320 vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg 399 (462)
++ +.. -.+-++.+.++|+|+|.++...-+. . .. . ..-|. |.|.. .++..+.++.+.. ++|||+
T Consensus 287 aG---~V~---t~~~a~~~~~aGad~I~vg~g~Gs~-~-~t--~---~~~~~-g~p~~-~ai~~~~~~~~~~--~v~vIa 349 (495)
T PTZ00314 287 AG---NVV---TADQAKNLIDAGADGLRIGMGSGSI-C-IT--Q---EVCAV-GRPQA-SAVYHVARYARER--GVPCIA 349 (495)
T ss_pred EC---CcC---CHHHHHHHHHcCCCEEEECCcCCcc-c-cc--c---hhccC-CCChH-HHHHHHHHHHhhc--CCeEEe
Confidence 73 322 1345677888999999875332110 0 00 0 00011 12211 1333344444444 699999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchhhhh---------------------------------------------------
Q 012517 400 CGGISSGEDAYRKIRAGATLVQLYTAFAY--------------------------------------------------- 428 (462)
Q Consensus 400 ~GGI~s~~dA~e~i~aGAd~Vqv~Tali~--------------------------------------------------- 428 (462)
.|||.++.|+.+++.+||++||++|.|.-
T Consensus 350 dGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~~egv~ 429 (495)
T PTZ00314 350 DGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKVAQGVS 429 (495)
T ss_pred cCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccccCCceE
Confidence 99999999999999999999999999841
Q ss_pred -----cCC--ChHHHHHHHHHHHHHHcCCCCHHHhhc
Q 012517 429 -----GGP--ALIPQIKAELAECLERDGFKSIIEAVG 458 (462)
Q Consensus 429 -----~GP--~~i~~i~~~L~~~l~~~G~~si~e~~G 458 (462)
+|+ +++.++..+|+.-|.-.|..||.|+.-
T Consensus 430 ~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 430 GSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred EeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 022 356677778888888899999999874
No 90
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.68 E-value=4.3e-07 Score=88.14 Aligned_cols=120 Identities=21% Similarity=0.305 Sum_probs=84.9
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC---------------CChhhHHH
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD---------------LSKEDLED 333 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd---------------l~~~~~~~ 333 (462)
.+|.+.+|-. .+.+++.+.++.+... ...+++.+++..+ .+..+..+
T Consensus 96 G~~~vilg~~--------~l~~~~~~~~~~~~~~----------~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~ 157 (232)
T TIGR03572 96 GADKVSINTA--------ALENPDLIEEAARRFG----------SQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVE 157 (232)
T ss_pred CCCEEEEChh--------HhcCHHHHHHHHHHcC----------CceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHH
Confidence 4899998832 2445555555554331 1124555554432 12235678
Q ss_pred HHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHH-H
Q 012517 334 IAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYR-K 412 (462)
Q Consensus 334 ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e-~ 412 (462)
+++.+.+.|+|.|++++.+ + .|..+|. .++.++++++.+ ++|||++|||.+.+|+.+ .
T Consensus 158 ~~~~~~~~G~d~i~i~~i~--~------------~g~~~g~-----~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l 216 (232)
T TIGR03572 158 WAREAEQLGAGEILLNSID--R------------DGTMKGY-----DLELIKTVSDAV--SIPVIALGGAGSLDDLVEVA 216 (232)
T ss_pred HHHHHHHcCCCEEEEeCCC--c------------cCCcCCC-----CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHH
Confidence 9999999999999998633 1 1222332 478899999988 799999999999999999 5
Q ss_pred HHhCCCEEEEchhhh
Q 012517 413 IRAGATLVQLYTAFA 427 (462)
Q Consensus 413 i~aGAd~Vqv~Tali 427 (462)
...||+.|+++|+|-
T Consensus 217 ~~~gadgV~vg~a~h 231 (232)
T TIGR03572 217 LEAGASAVAAASLFH 231 (232)
T ss_pred HHcCCCEEEEehhhh
Confidence 569999999999984
No 91
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.68 E-value=6e-07 Score=87.46 Aligned_cols=89 Identities=22% Similarity=0.287 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+.+.|++.|+++++.. .|..+| ..++.++++++.+ ++||++.|||++.+|+
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~~~~--------------~g~~~g-----~~~~~i~~i~~~~--~iPvia~GGI~~~~di 208 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTNVDV--------------EGLLEG-----VNTEPVKELVDSV--DIPVIASGGVTTLDDL 208 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecC--------------CCCcCC-----CCHHHHHHHHHhC--CCCEEEeCCCCCHHHH
Confidence 678899999999999999988642 122233 2467889999988 6999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
.+++.+||+.|+++|+++ ++|..+.+++..
T Consensus 209 ~~~~~~Ga~gv~vgsa~~-~~~~~~~~~~~~ 238 (241)
T PRK13585 209 RALKEAGAAGVVVGSALY-KGKFTLEEAIEA 238 (241)
T ss_pred HHHHHcCCCEEEEEHHHh-cCCcCHHHHHHH
Confidence 999999999999999995 578877766544
No 92
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.67 E-value=5.1e-07 Score=93.18 Aligned_cols=152 Identities=22% Similarity=0.300 Sum_probs=84.3
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe
Q 012517 243 GVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322 (462)
Q Consensus 243 gvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi 322 (462)
|-.+...|++++ +..++.+.+.-|. -||+. ..+..+.+.|.++++.+++.. ..+||.||+
T Consensus 151 GG~Lp~~KV~~~-----ia~~R~~~~g~~~-----iSP~~--h~di~s~edl~~~I~~Lr~~~--------~~~pVgvKl 210 (368)
T PF01645_consen 151 GGHLPGEKVTEE-----IARIRGVPPGVDL-----ISPPP--HHDIYSIEDLAQLIEELRELN--------PGKPVGVKL 210 (368)
T ss_dssp --EE-GGG--HH-----HHHHHTS-TT--E-----E--SS---TT-SSHHHHHHHHHHHHHH---------TTSEEEEEE
T ss_pred cceechhhchHH-----HHHHhCCCCCCcc-----ccCCC--CCCcCCHHHHHHHHHHHHhhC--------CCCcEEEEE
Confidence 445655566654 4445555554443 35543 356677788999999998873 478999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHh-----cCCCccE
Q 012517 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLL-----TRGKIPL 397 (462)
Q Consensus 323 spdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~-----~~~~ipI 397 (462)
...-. ...++..+.++|+|.|++....-+. +.-+ ....+.. |-|+ ...+.++++. +.+++.|
T Consensus 211 ~~~~~---~~~~~~~~~~ag~D~ItIDG~~GGT-GAap-~~~~d~~----GlP~----~~~l~~a~~~L~~~glr~~V~L 277 (368)
T PF01645_consen 211 VAGRG---VEDIAAGAAKAGADFITIDGAEGGT-GAAP-LTSMDHV----GLPT----EYALARAHQALVKNGLRDRVSL 277 (368)
T ss_dssp E-STT---HHHHHHHHHHTT-SEEEEE-TT----SSEE-CCHHHHC-------H----HHHHHHHHHHHHCTT-CCCSEE
T ss_pred CCCCc---HHHHHHhhhhccCCEEEEeCCCCCC-CCCc-hhHHhhC----CCcH----HHHHHHHHHHHHHcCCCCceEE
Confidence 87643 3344555889999999998543111 0000 0001111 1221 2233344433 3457999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 398 IGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 398 Ig~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
|++||+.++.|+.+.+..|||.|.++|+++
T Consensus 278 i~sGgl~t~~dv~kalaLGAD~v~igt~~l 307 (368)
T PF01645_consen 278 IASGGLRTGDDVAKALALGADAVYIGTAAL 307 (368)
T ss_dssp EEESS--SHHHHHHHHHCT-SEEE-SHHHH
T ss_pred EEeCCccCHHHHHHHHhcCCCeeEecchhh
Confidence 999999999999999999999999999987
No 93
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.67 E-value=2.8e-06 Score=89.12 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=33.7
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
++|||+.|||.|++++..++..||+.||++|.|+.
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fla 253 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQC 253 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHh
Confidence 59999999999999999999999999999999985
No 94
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.67 E-value=2e-06 Score=85.02 Aligned_cols=164 Identities=22% Similarity=0.229 Sum_probs=99.4
Q ss_pred HHHHHHHHHcc-cCcEEEEec--cCCCCCC-------cccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE--EEecC-
Q 012517 258 DYVQGVHTLSQ-YADYLVINV--SSPNTPG-------LRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL--VKIAP- 324 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNv--SsPnt~g-------lr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~--vKisp- 324 (462)
...+.++.+.+ .+|+||+-+ |=|...| .|.|++.-.+..+++.+++.+++ ..+.|+. ....|
T Consensus 25 ~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~-----~~~~plv~m~Y~Npi 99 (256)
T TIGR00262 25 TSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQK-----HPNIPIGLLTYYNLI 99 (256)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-----CCCCCEEEEEeccHH
Confidence 44444554433 499999974 6666654 23344444455666666555421 1245643 23333
Q ss_pred -----------------------CCChhhHHHHHHHHHHcCCcEEEEecCCcc--CCCC----CCCCCcccccCCCCCCc
Q 012517 325 -----------------------DLSKEDLEDIAAVAVALRLDGLIISNTTIS--RPDP----VSKNPVAKETGGLSGKP 375 (462)
Q Consensus 325 -----------------------dl~~~~~~~ia~~~~~~GvdgIivsNTt~~--r~~~----~~~~~~~~~~GGlSG~~ 375 (462)
|+..++..++.+.+.+.|++-+.+.|.+.. |... ....-.....-|..|..
T Consensus 100 ~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~ 179 (256)
T TIGR00262 100 FRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGAR 179 (256)
T ss_pred hhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCc
Confidence 344455556666666666665544433221 2100 00000111122666653
Q ss_pred --CccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 376 --LLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 376 --l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+.+...+.++++++.+ +.||+.-|||.|++++.+.+++|||.|-++|+++.
T Consensus 180 ~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 180 NRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred ccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 4556789999999988 67999999999999999999999999999999963
No 95
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.64 E-value=1.1e-06 Score=94.49 Aligned_cols=167 Identities=21% Similarity=0.165 Sum_probs=105.5
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
|+.+.++.+.+ .+|+++|. ++| |.. +...+.++++++.. +.++.|+-..=++ .+-++
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd-~a~---g~~-----~~~~~~i~~ir~~~---------~~~~~V~aGnV~t----~e~a~ 299 (502)
T PRK07107 242 DYAERVPALVEAGADVLCID-SSE---GYS-----EWQKRTLDWIREKY---------GDSVKVGAGNVVD----REGFR 299 (502)
T ss_pred hHHHHHHHHHHhCCCeEeec-Ccc---ccc-----HHHHHHHHHHHHhC---------CCCceEEeccccC----HHHHH
Confidence 44455555554 59999997 333 221 23345666665532 2346677654444 34466
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHh-------cCCCccEEEecCCCCHHHH
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLL-------TRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~-------~~~~ipIIg~GGI~s~~dA 409 (462)
.+.++|+|+|.++|..-+-- .. ....|. |.| .+..+.++++. .+.++|||+-|||.++-|+
T Consensus 300 ~li~aGAd~I~vg~g~Gs~c--~t----r~~~~~--g~~----~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi 367 (502)
T PRK07107 300 YLAEAGADFVKVGIGGGSIC--IT----REQKGI--GRG----QATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHM 367 (502)
T ss_pred HHHHcCCCEEEECCCCCcCc--cc----ccccCC--Ccc----HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHH
Confidence 77789999999988653110 00 001111 222 23344444443 3445999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhh-----------------------------------------------------cCC--ChH
Q 012517 410 YRKIRAGATLVQLYTAFAY-----------------------------------------------------GGP--ALI 434 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~-----------------------------------------------------~GP--~~i 434 (462)
.++|.+|||+||+++.|-- +|+ +++
T Consensus 368 ~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~ 447 (502)
T PRK07107 368 TLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNV 447 (502)
T ss_pred HHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccCCccEEEecCCCCHHHHH
Confidence 9999999999999998821 111 245
Q ss_pred HHHHHHHHHHHHHcCCCCHHHhhc
Q 012517 435 PQIKAELAECLERDGFKSIIEAVG 458 (462)
Q Consensus 435 ~~i~~~L~~~l~~~G~~si~e~~G 458 (462)
.++..+|+.-|.--|-+|+.|+.-
T Consensus 448 ~~~~~glrs~~~y~g~~~i~~l~~ 471 (502)
T PRK07107 448 AITLSKVRSTMCNCGALSIPELQQ 471 (502)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHh
Confidence 667777788888888899998874
No 96
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=98.63 E-value=3.7e-07 Score=96.45 Aligned_cols=189 Identities=22% Similarity=0.261 Sum_probs=122.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 012517 242 LGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVK 321 (462)
Q Consensus 242 lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vK 321 (462)
-|-++.+.|.+++ +...+...+..|. -||.. ..+..+.+.|.+++..++++. ...+|.||
T Consensus 250 eGG~Lpg~KV~~~-----IA~~R~~~pG~~~-----ISP~p--HHDiysieDLaqlI~dLk~~~--------~~~~I~VK 309 (485)
T COG0069 250 EGGQLPGEKVTPE-----IAKTRGSPPGVGL-----ISPPP--HHDIYSIEDLAQLIKDLKEAN--------PWAKISVK 309 (485)
T ss_pred CCCCCCCccCCHH-----HHHhcCCCCCCCC-----cCCCC--cccccCHHHHHHHHHHHHhcC--------CCCeEEEE
Confidence 3445666677754 3334444444443 35543 345667788999999998874 34569999
Q ss_pred ecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHh--cCCCccEEE
Q 012517 322 IAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLL--TRGKIPLIG 399 (462)
Q Consensus 322 ispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~--~~~~ipIIg 399 (462)
+..... +..++--+.++++|.|++..-.-+- +.- +...... .|-|+ +..+..+.+.-.. +..++-|++
T Consensus 310 lva~~~---v~~iaagvakA~AD~I~IdG~~GGT-GAs--P~~~~~~---~GiP~-e~glae~~q~L~~~glRd~v~l~~ 379 (485)
T COG0069 310 LVAEHG---VGTIAAGVAKAGADVITIDGADGGT-GAS--PLTSIDH---AGIPW-ELGLAETHQTLVLNGLRDKVKLIA 379 (485)
T ss_pred Eecccc---hHHHHhhhhhccCCEEEEcCCCCcC-CCC--cHhHhhc---CCchH-HHHHHHHHHHHHHcCCcceeEEEe
Confidence 987644 3344444888999999998542110 000 0000011 12232 2222222222221 345799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchhhh---------------------hcCCChHHH----------------HHHHHH
Q 012517 400 CGGISSGEDAYRKIRAGATLVQLYTAFA---------------------YGGPALIPQ----------------IKAELA 442 (462)
Q Consensus 400 ~GGI~s~~dA~e~i~aGAd~Vqv~Tali---------------------~~GP~~i~~----------------i~~~L~ 442 (462)
.||+.|+.|+...+..|||.|-++|+.+ .++|.+-++ +.+|++
T Consensus 380 ~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~r 459 (485)
T COG0069 380 DGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELR 459 (485)
T ss_pred cCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976 245544444 678999
Q ss_pred HHHHHcCCCCHHHhhccc
Q 012517 443 ECLERDGFKSIIEAVGAD 460 (462)
Q Consensus 443 ~~l~~~G~~si~e~~G~~ 460 (462)
++|...|+.+++|++|..
T Consensus 460 ella~lG~~~l~el~g~~ 477 (485)
T COG0069 460 ELLAALGKRSLSELIGRT 477 (485)
T ss_pred HHHHHhCCCCHHHHhcch
Confidence 999999999999999963
No 97
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.62 E-value=1.9e-07 Score=91.17 Aligned_cols=90 Identities=30% Similarity=0.312 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+.+.|+|.|++++.+.. |.. .+..++.++++++.+ ++||+++|||.|.+|+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~---------------~~~----~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~ 86 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITAS---------------SEG----RETMLDVVERVAEEV--FIPLTVGGGIRSLEDA 86 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcc---------------ccc----CcccHHHHHHHHHhC--CCCEEEeCCCCCHHHH
Confidence 7789999999999999999987531 111 123678899999998 6999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+++..||+.|+++|+++ ++|+++.++.+.+
T Consensus 87 ~~~l~~G~~~v~ig~~~~-~~p~~~~~i~~~~ 117 (243)
T cd04731 87 RRLLRAGADKVSINSAAV-ENPELIREIAKRF 117 (243)
T ss_pred HHHHHcCCceEEECchhh-hChHHHHHHHHHc
Confidence 999999999999999996 5899999987765
No 98
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.60 E-value=1.2e-06 Score=84.40 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=82.8
Q ss_pred HHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHH
Q 012517 259 YVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVA 338 (462)
Q Consensus 259 y~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~ 338 (462)
+++.+..++ +|++.+...--..| ..+.+.++++.+++. ...|+++-+. +.++ +..+
T Consensus 80 ~v~~a~~aG--ad~I~~d~~~~~~p------~~~~~~~~i~~~~~~---------~~i~vi~~v~---t~ee----~~~a 135 (221)
T PRK01130 80 EVDALAAAG--ADIIALDATLRPRP------DGETLAELVKRIKEY---------PGQLLMADCS---TLEE----GLAA 135 (221)
T ss_pred HHHHHHHcC--CCEEEEeCCCCCCC------CCCCHHHHHHHHHhC---------CCCeEEEeCC---CHHH----HHHH
Confidence 344444444 99888764310011 013456777776541 2578876553 2223 3678
Q ss_pred HHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCC
Q 012517 339 VALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGAT 418 (462)
Q Consensus 339 ~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd 418 (462)
.+.|+|.|.+++...... . ... .......++++++.+ ++||++.|||.+++|+.+++++|||
T Consensus 136 ~~~G~d~i~~~~~g~t~~------~-----~~~-----~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~Gad 197 (221)
T PRK01130 136 QKLGFDFIGTTLSGYTEE------T-----KKP-----EEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAH 197 (221)
T ss_pred HHcCCCEEEcCCceeecC------C-----CCC-----CCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCC
Confidence 899999987654321000 0 000 112467889999988 6999999999999999999999999
Q ss_pred EEEEchhhh
Q 012517 419 LVQLYTAFA 427 (462)
Q Consensus 419 ~Vqv~Tali 427 (462)
.|+++|+++
T Consensus 198 gV~iGsai~ 206 (221)
T PRK01130 198 AVVVGGAIT 206 (221)
T ss_pred EEEEchHhc
Confidence 999999985
No 99
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.59 E-value=6e-07 Score=86.86 Aligned_cols=82 Identities=30% Similarity=0.385 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHH
Q 012517 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGED 408 (462)
Q Consensus 329 ~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~d 408 (462)
.+..++++.+.+.|++.|++++.+ + .|-.+|+ .++.++++++.+ ++||++.|||.+.+|
T Consensus 146 ~~~~~~~~~~~~~ga~~iii~~~~--~------------~g~~~g~-----~~~~i~~i~~~~--~ipvi~~GGi~~~~d 204 (234)
T cd04732 146 VSLEELAKRFEELGVKAIIYTDIS--R------------DGTLSGP-----NFELYKELAAAT--GIPVIASGGVSSLDD 204 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeec--C------------CCccCCC-----CHHHHHHHHHhc--CCCEEEecCCCCHHH
Confidence 367789999999999999998653 1 1223332 468889999988 799999999999999
Q ss_pred HHHHHHhCCCEEEEchhhhhcCCC
Q 012517 409 AYRKIRAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali~~GP~ 432 (462)
+.++++.||+.|+++|+++. |+-
T Consensus 205 i~~~~~~Ga~gv~vg~~~~~-~~~ 227 (234)
T cd04732 205 IKALKELGVAGVIVGKALYE-GKI 227 (234)
T ss_pred HHHHHHCCCCEEEEeHHHHc-CCC
Confidence 99999999999999999964 553
No 100
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.59 E-value=5.3e-07 Score=105.31 Aligned_cols=164 Identities=19% Similarity=0.176 Sum_probs=109.3
Q ss_pred ccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCC
Q 012517 277 VSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRP 356 (462)
Q Consensus 277 vSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~ 356 (462)
+-||+. ..+....+.|.+++..++++. .+.||.||+.... .+..++.-+.++|+|.|++++..-+-
T Consensus 968 liSP~p--hhdiySieDL~qlI~~Lk~~~--------~~~~I~VKl~a~~---~vg~ia~gvaka~aD~I~IdG~~GGT- 1033 (1485)
T PRK11750 968 LISPPP--HHDIYSIEDLAQLIFDLKQVN--------PKALVSVKLVSEP---GVGTIATGVAKAYADLITISGYDGGT- 1033 (1485)
T ss_pred CCCCCC--CccCCCHHHHHHHHHHHHHhC--------CCCcEEEEEccCC---CccHHHhChhhcCCCEEEEeCCCCCc-
Confidence 345542 345566678889999988763 4689999998653 23456666778999999998753211
Q ss_pred CCCCCCCcccccCCCCCCcCccchHHHHHHH-HH-hcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh------
Q 012517 357 DPVSKNPVAKETGGLSGKPLLSLSNNILKEM-YL-LTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY------ 428 (462)
Q Consensus 357 ~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i-~~-~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~------ 428 (462)
+ ..+......-| -|+ +..+..+.+. .+ -+..++.|++.||+.|+.|+..++..|||.|.++|+++.
T Consensus 1034 G--Aap~~~~~~~G---lP~-e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~ 1107 (1485)
T PRK11750 1034 G--ASPLTSVKYAG---SPW-ELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKY 1107 (1485)
T ss_pred c--cccHHHHhhCC---ccH-HHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHH
Confidence 0 00111111222 221 1223222222 11 234579999999999999999999999999999999862
Q ss_pred ---------------cCCC---------------hHHHHHHHHHHHHHHcCCCCHHHhhccc
Q 012517 429 ---------------GGPA---------------LIPQIKAELAECLERDGFKSIIEAVGAD 460 (462)
Q Consensus 429 ---------------~GP~---------------~i~~i~~~L~~~l~~~G~~si~e~~G~~ 460 (462)
++|. ++.-+.+++++.|...|++|++|+||..
T Consensus 1108 ~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~~s~~elvGr~ 1169 (1485)
T PRK11750 1108 LRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDLIGRT 1169 (1485)
T ss_pred HHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcCch
Confidence 2332 2334567899999999999999999963
No 101
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.58 E-value=2.3e-06 Score=82.45 Aligned_cols=119 Identities=23% Similarity=0.281 Sum_probs=82.2
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLII 348 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIiv 348 (462)
.+|++.++.+.-..| +.+.+.++++.+++. + ++|+++.+. +. +-+..+.+.|+|.|.+
T Consensus 92 Gad~I~~~~~~~~~p------~~~~~~~~i~~~~~~--------g-~~~iiv~v~---t~----~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 92 GADIIALDATDRPRP------DGETLAELIKRIHEE--------Y-NCLLMADIS---TL----EEALNAAKLGFDIIGT 149 (219)
T ss_pred CCCEEEEeCCCCCCC------CCcCHHHHHHHHHHH--------h-CCeEEEECC---CH----HHHHHHHHcCCCEEEc
Confidence 399999987542211 113566777777654 2 578888653 22 2246778899999865
Q ss_pred ecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 349 SNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 349 sNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
.+.. +... .. ... ....+.++++++.+ ++||++.|||.+++|+.+++.+|||.|+++|+++
T Consensus 150 ~~~g--~t~~--------~~-~~~-----~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~ 210 (219)
T cd04729 150 TLSG--YTEE--------TA-KTE-----DPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVVVGSAIT 210 (219)
T ss_pred cCcc--cccc--------cc-CCC-----CCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence 4321 1100 00 011 12457889999988 6999999999999999999999999999999985
No 102
>PLN02591 tryptophan synthase
Probab=98.58 E-value=2.5e-06 Score=84.01 Aligned_cols=163 Identities=22% Similarity=0.251 Sum_probs=99.1
Q ss_pred HHHHHHHHHcc-cCcEEEEe--ccCCCCCC-------cccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEec----
Q 012517 258 DYVQGVHTLSQ-YADYLVIN--VSSPNTPG-------LRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIA---- 323 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiN--vSsPnt~g-------lr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKis---- 323 (462)
.+.+.++.+.+ .+|+|||- ||-|...| .|.|++.-.+.++++.+++.++ ..+.|+++=.=
T Consensus 17 ~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~------~~~~p~ilm~Y~N~i 90 (250)
T PLN02591 17 TTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAP------QLSCPIVLFTYYNPI 90 (250)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc------CCCCCEEEEecccHH
Confidence 55555555543 59999997 46666654 2334444445566666666542 13567653111
Q ss_pred ----------------------CCCChhhHHHHHHHHHHcCCcEEEEe-cCC-ccCCCCC---C-CCCcccccCCCCCCc
Q 012517 324 ----------------------PDLSKEDLEDIAAVAVALRLDGLIIS-NTT-ISRPDPV---S-KNPVAKETGGLSGKP 375 (462)
Q Consensus 324 ----------------------pdl~~~~~~~ia~~~~~~GvdgIivs-NTt-~~r~~~~---~-~~~~~~~~GGlSG~~ 375 (462)
||++.|+..++.+.+.+.|++-|.+. -|| ..|.... . ..-.....-|.+|..
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~ 170 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR 170 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC
Confidence 35555556666666666666665544 222 1121000 0 000111224555542
Q ss_pred --CccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 376 --LLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 376 --l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+.+...+.++++++.+ ++||+.--||++++|+.+.+..|||.|-++|+++.
T Consensus 171 ~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 171 ASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred cCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 2234456789999986 79999999999999999999999999999999975
No 103
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.58 E-value=8e-07 Score=101.95 Aligned_cols=287 Identities=21% Similarity=0.242 Sum_probs=168.0
Q ss_pred CCCccEEEcCeeeCCcEEeCCCC-CCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchh-
Q 012517 123 PAILGLEVWGRKFSNPLGLAAGF-DKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEG- 200 (462)
Q Consensus 123 ~~~L~v~v~Gl~f~NPiglAAG~-dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G- 200 (462)
++.-..++||-++.+|||.|||+ .--+..+-...-.|.-|+|.|||...-..--+||.+-. +|++ ||-+.
T Consensus 39 ~~~~~~~~~~~~~~~~~gpaagp~tql~qn~~~~~~~g~r~~elktvq~~d~~~~~~pci~~--~de~------~n~ews 110 (1019)
T PRK09853 39 DKGKTISVFGETLATPIGPAAGPHTQLAQNIVASYLTGGRFIELKTVQILDGLELEKPCIDA--EDEC------YNTEWS 110 (1019)
T ss_pred CCCCeeehhcccCCCCCCCCCCchHHHHHHHHHHHHccCceEEEEEEEeecccccCCCccCc--ccce------eeeecc
Confidence 44456679999999999999998 44666777777789999999999986544456888853 3443 33322
Q ss_pred -----HHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCC-CCceEEEEecCCCC---CHHHHHHHH-----------
Q 012517 201 -----IVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKA-GPGILGVNIGKNKT---SEDAAADYV----------- 260 (462)
Q Consensus 201 -----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~lgvnig~nk~---t~~~~~dy~----------- 260 (462)
.+++.+.++.+..-..+ ..+-+. ++. ....+-.|+|.+-. |+ .++.|+
T Consensus 111 ~e~~~~~a~~ey~ka~~~~~~~--------~~~~~~---~~~~~~f~~n~svgy~l~gi~~~-~~~~~i~~~~~~~~~~~ 178 (1019)
T PRK09853 111 TELTLPKAYDEYLKAWFALHLL--------EKEFQL---SDSGKSFIFNMSVGYDLEGIKSP-KMQQFIDGMMDASDTPI 178 (1019)
T ss_pred cccchHHHHHHHHHHHHHHHHH--------HHHhCC---CCCCCceEEEeecccCccccCch-hHHHHHHHhhhcccChH
Confidence 13334444432210000 000001 000 11245666665411 22 122333
Q ss_pred --HHHHHHcccC--------cEEEEeccCCCCC--CcccccCc--hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC-
Q 012517 261 --QGVHTLSQYA--------DYLVINVSSPNTP--GLRMLQGR--KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD- 325 (462)
Q Consensus 261 --~~~~~l~~~a--------D~leiNvSsPnt~--glr~lq~~--~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd- 325 (462)
+|-+.+.+.. +.|+ .+|+--.+ -+..|+.. +.++.|.+-+.++ ++...+||+.|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~t~st~hgcp~~eie~i~~~~~~~---------k~~~~~~k~nptl 248 (1019)
T PRK09853 179 FAECRETLNKLLDDFAFLAREGLE-RIPPSICPSVTLSTMHGCPPHEIEAIARYLLEE---------KGLNTFVKLNPTL 248 (1019)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhh-cCChhhcCceeehhccCCCHHHHHHHHHHHHhc---------cCCceEEeeCccc
Confidence 2322222211 1222 23222222 23455543 6778888887665 478999999983
Q ss_pred ----------------------------CChhhHHHHHHH----HHHcCC-cEEEEecCCccCCCCCCCCCcccccCCCC
Q 012517 326 ----------------------------LSKEDLEDIAAV----AVALRL-DGLIISNTTISRPDPVSKNPVAKETGGLS 372 (462)
Q Consensus 326 ----------------------------l~~~~~~~ia~~----~~~~Gv-dgIivsNTt~~r~~~~~~~~~~~~~GGlS 372 (462)
+..++...+.+. +.+.|. -||-+|||..-- .....+..+.--+|
T Consensus 249 lg~~~~r~~~d~~g~~~~~~~~~~f~~dl~~~~a~~m~~~l~~~~~~~~~~fgvk~tnt~~~~---~~~~~lp~~~myms 325 (1019)
T PRK09853 249 LGYERVREILDKMGFDYIGLKEEHFDHDLQYTDAVEMLERLMALAKEKGLGFGVKLTNTLPVI---NNKGELPGEEMYMS 325 (1019)
T ss_pred ccHHHHHHHHHhcCCceEecchhhcccccchhHHHHHHHHHHHHHHHcCceeeEEEeccccee---ecCCCCCccccccc
Confidence 233444444444 445553 578999997431 11122223445789
Q ss_pred CCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcC-CChHHHHHHHHHH
Q 012517 373 GKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGG-PALIPQIKAELAE 443 (462)
Q Consensus 373 G~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~G-P~~i~~i~~~L~~ 443 (462)
|++|+|.+..+..++.+.+++++||-++||-. .-.+.+....|-+.|-+.|.++..| ..=..++.+.|.+
T Consensus 326 g~~l~pl~i~~a~~l~~~f~g~l~is~~~g~~-~~~~~~~~~~gi~pv~~a~~~lk~~~~~~~~~l~~~l~~ 396 (1019)
T PRK09853 326 GRALFPLSINLAAKLSREFDGKLPISYSGGAD-QFNIRDIFDTGIRPITMATTLLKPGGYLRLTQCARELEG 396 (1019)
T ss_pred CCcccceeHHHHHhhHHhhCCCCceeEEeccc-eeehhhccCCCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999999999999999999999999999864 3334456678888888888886422 2233444444444
No 104
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.58 E-value=6.7e-08 Score=95.71 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=94.6
Q ss_pred HHHHHHHcccCcEEEEeccCCCCC----CcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHH
Q 012517 260 VQGVHTLSQYADYLVINVSSPNTP----GLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA 335 (462)
Q Consensus 260 ~~~~~~l~~~aD~leiNvSsPnt~----glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia 335 (462)
++.++..+ +|.+.+|..||... |...+++++.+ ++|++++ ++||+.|+.-+. ..-+
T Consensus 30 a~iae~~g--~~~v~~~~~~psd~~~~gg~~Rm~~p~~I----~aIk~~V---------~iPVigk~Righ-----~~Ea 89 (293)
T PRK04180 30 AKIAEEAG--AVAVMALERVPADIRAAGGVARMADPKMI----EEIMDAV---------SIPVMAKARIGH-----FVEA 89 (293)
T ss_pred HHHHHHhC--hHHHHHccCCCchHhhcCCeeecCCHHHH----HHHHHhC---------CCCeEEeehhhH-----HHHH
Confidence 33444444 89999999999863 22234555444 4666653 799999998653 3446
Q ss_pred HHHHHcCCcEEEEecCCccCCC-C--------CCCC-------------------Cc-ccc-------------------
Q 012517 336 AVAVALRLDGLIISNTTISRPD-P--------VSKN-------------------PV-AKE------------------- 367 (462)
Q Consensus 336 ~~~~~~GvdgIivsNTt~~r~~-~--------~~~~-------------------~~-~~~------------------- 367 (462)
+.+++.|+|.|..|... ||. . +..+ .. ...
T Consensus 90 ~~L~~~GvDiID~Te~l--rpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~ 167 (293)
T PRK04180 90 QILEALGVDYIDESEVL--TPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIN 167 (293)
T ss_pred HHHHHcCCCEEeccCCC--CchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHH
Confidence 78899999998655421 220 0 0000 00 000
Q ss_pred -----cCCCCCCc------CccchHHHHHHHHHhcCCCccEE--EecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 368 -----TGGLSGKP------LLSLSNNILKEMYLLTRGKIPLI--GCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 368 -----~GGlSG~~------l~~~al~~v~~i~~~~~~~ipII--g~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
.-||.... .....++.++++++.. ++||| +.|||.|++|+.+++++||+.|.++|++.
T Consensus 168 ~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 168 GEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred HHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhh
Confidence 11222111 1223568888898877 69998 99999999999999999999999999996
No 105
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.57 E-value=8.7e-07 Score=87.42 Aligned_cols=107 Identities=23% Similarity=0.289 Sum_probs=80.2
Q ss_pred EEEecCCC--ChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCcc
Q 012517 319 LVKIAPDL--SKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIP 396 (462)
Q Consensus 319 ~vKispdl--~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ip 396 (462)
-||+.... +..+..++++.+.+.|+|.|+++.-. + .|-.+|. .++.++++++.+ ++|
T Consensus 143 ~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~--~------------~g~~~g~-----~~~~~~~i~~~~--~ip 201 (254)
T TIGR00735 143 EVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMD--K------------DGTKSGY-----DLELTKAVSEAV--KIP 201 (254)
T ss_pred EEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcC--c------------ccCCCCC-----CHHHHHHHHHhC--CCC
Confidence 35555433 24578899999999999999997532 1 1112232 467889999988 799
Q ss_pred EEEecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 397 LIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 397 IIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
||++|||.+.+|+.+.++.| |+.|++++++.. |--- .+++.++|++.||.
T Consensus 202 via~GGi~s~~di~~~~~~g~~dgv~~g~a~~~-~~~~----~~~~~~~~~~~gi~ 252 (254)
T TIGR00735 202 VIASGGAGKPEHFYEAFTKGKADAALAASVFHY-REIT----IGEVKEYLAERGIP 252 (254)
T ss_pred EEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC-CCCC----HHHHHHHHHHCCCc
Confidence 99999999999999999988 999999999854 4222 33566778888874
No 106
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.55 E-value=9.5e-07 Score=101.64 Aligned_cols=290 Identities=21% Similarity=0.237 Sum_probs=170.8
Q ss_pred CCCccEEEcCeeeCCcEEeCCCC-CCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchh-
Q 012517 123 PAILGLEVWGRKFSNPLGLAAGF-DKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEG- 200 (462)
Q Consensus 123 ~~~L~v~v~Gl~f~NPiglAAG~-dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G- 200 (462)
++.-..++||-++.+|||.|||+ .--+..+-...-.|.-|+|.|||...-..--+||.+-. +|++ ||-+.
T Consensus 38 ~~~~~~~~~~~~~~~~~gpaagp~~ql~qn~~~~~~~g~r~~elktvq~~~~~~~~~pci~~--~~~~------~n~ews 109 (1012)
T TIGR03315 38 DPGKYISLFGEKLETPVGPAAGPHTQLAQNIVASYLTGGRFFELKTVQVLDGLDLPKPCIDA--ADEC------YNVEWS 109 (1012)
T ss_pred CCCCeeehhcccCCCCCCCCCCchHHHHHHHHHHHHcccceEEeeeEEeecccccCCCccCc--ccce------eeeecc
Confidence 44456689999999999999998 44667777777789999999999986544557888853 3443 33322
Q ss_pred -----HHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCC---CHHHHHHHHHHHHH-------
Q 012517 201 -----IVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKT---SEDAAADYVQGVHT------- 265 (462)
Q Consensus 201 -----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~---t~~~~~dy~~~~~~------- 265 (462)
.+++.+.++.+..-.-+ ..+-+. ++.....+-.|+|.+-. |+ .++.|++.++.
T Consensus 110 ~e~~~~~a~~ey~k~~~~~~~~--------~~~~~~---~~~~~~~~n~svgy~l~gi~~~-~~~~~~~~~~~~~~~~~~ 177 (1012)
T TIGR03315 110 TELTVPEAYDEYVKAWFLLHLL--------EKEFEL---GDPRGFMFNMSVGYDLAGIKSP-KVDRYIEEMQDASGTPIF 177 (1012)
T ss_pred cccchHHHHHHHHHHHHHHHHH--------HHHhCC---CCccceEEEeecccCccccCcc-cHHHHHHHhhhcccChHH
Confidence 23344444432210000 000000 01112245666665411 11 12233333322
Q ss_pred ------Hccc------CcEEEEeccCCCCC---CcccccC--chHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC---
Q 012517 266 ------LSQY------ADYLVINVSSPNTP---GLRMLQG--RKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD--- 325 (462)
Q Consensus 266 ------l~~~------aD~leiNvSsPnt~---glr~lq~--~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd--- 325 (462)
+.+. .|.-.|+--||+.. -+..|+. ++.++.|.+-+.++ ++.-.+||+.|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~st~hgcp~~eie~i~~~~~~~---------k~~~~~~k~nptllg 248 (1012)
T TIGR03315 178 AECRATLKKYIDYFKKVDDEFIDAISPKVCHSVTLSTMHGCPPDEIEAICRYLLEE---------KGLHTFVKLNPTLLG 248 (1012)
T ss_pred HHHHHHHHHHHHHhhhcCHhhhhcCChhhcCceeehhccCCCHHHHHHHHHHHHhc---------cCCceEEeeCccccc
Confidence 2221 11111222233322 2345554 36778888887765 478899999983
Q ss_pred --------------------------CChhhHHHHHHH----HHHcC-CcEEEEecCCccCCCCCCCCCcccccCCCCCC
Q 012517 326 --------------------------LSKEDLEDIAAV----AVALR-LDGLIISNTTISRPDPVSKNPVAKETGGLSGK 374 (462)
Q Consensus 326 --------------------------l~~~~~~~ia~~----~~~~G-vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~ 374 (462)
+..++...+.+. +.+.| .-||-+|||..-- .....+..+.--+||+
T Consensus 249 ~~~~r~~~~~~g~~~~~~~~~~f~~dl~~~~~~~~~~~l~~~~~~~~~~fgvk~~nt~~~~---~~~~~~p~~~my~sg~ 325 (1012)
T TIGR03315 249 YKFVRDTMDEMGFDYIVLKEESFSHDLQYEDAVAMLQRLQLLAKEKGLGFGVKLTNTLPVT---IAKGELPGEEMYMSGR 325 (1012)
T ss_pred HHHHHHHHHhcCCceEecchhhcccccchhHHHHHHHHHHHHHHHcCCeeeEEEeccccee---ecCCCCCcccccccCC
Confidence 233444444444 44555 3578999997421 1122222344578999
Q ss_pred cCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCC-ChHHHHHHHHHHHH
Q 012517 375 PLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGP-ALIPQIKAELAECL 445 (462)
Q Consensus 375 ~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP-~~i~~i~~~L~~~l 445 (462)
+|+|.+..+..++.+.+++++||-++||-. .-.+.+....|-+.|-+.|.++..|- .=..++.+.|.+.+
T Consensus 326 ~l~~~~~~~~~~l~~~f~g~~~i~~~~g~~-~~n~~~~~~~gi~pv~~a~~~lk~~~~~~~~~l~~~l~~~~ 396 (1012)
T TIGR03315 326 ALFPLSINLAAKLSREFDGKLQISYSGGAD-IFNIKEIFDTGIWPITMATTLLKPGGYLRLNQCANELETSE 396 (1012)
T ss_pred ccccchHHHHHhhHHhhCCCCceEEEeccc-cccHHhhcCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 999999999999999999999999999864 22334677888888888888875332 23444444444433
No 107
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.55 E-value=5e-06 Score=82.55 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=100.0
Q ss_pred HHHHHHHHHcc-cCcEEEEe--ccCCCCCC-------cccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe-----
Q 012517 258 DYVQGVHTLSQ-YADYLVIN--VSSPNTPG-------LRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI----- 322 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiN--vSsPnt~g-------lr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi----- 322 (462)
.+.+.++.+.+ .+|+|||- +|-|...| .|.|++.-.+..+++.+++.+++ .+.|+++=.
T Consensus 30 ~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~------~~~p~vlm~Y~N~i 103 (263)
T CHL00200 30 ITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE------IKAPIVIFTYYNPV 103 (263)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC------CCCCEEEEecccHH
Confidence 55555555544 49999997 46666654 23344444455666666655421 356754211
Q ss_pred ---------------------cCCCChhhHHHHHHHHHHcCCcEEEEecCCc--cCCCCC----CCCCcccccCCCCCC-
Q 012517 323 ---------------------APDLSKEDLEDIAAVAVALRLDGLIISNTTI--SRPDPV----SKNPVAKETGGLSGK- 374 (462)
Q Consensus 323 ---------------------spdl~~~~~~~ia~~~~~~GvdgIivsNTt~--~r~~~~----~~~~~~~~~GGlSG~- 374 (462)
-||+..++..++.+.+.+.|++-|.+.+.+. .|...+ ...-.....-|..|.
T Consensus 104 ~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~ 183 (263)
T CHL00200 104 LHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLK 183 (263)
T ss_pred HHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCC
Confidence 1455556666666666666666665554332 121000 000000012233343
Q ss_pred -cCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 375 -PLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 375 -~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
.+.+...+.++++++.+ ++||..-+||.+++|+.+...+|||.|-++|+++
T Consensus 184 ~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 184 TELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred ccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 34455668888999987 7999999999999999999999999999999996
No 108
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.54 E-value=2.3e-06 Score=91.64 Aligned_cols=135 Identities=19% Similarity=0.145 Sum_probs=85.1
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
+..+.++.+.+ .+|.|.+..+.++. +.+.+++++|++.. .++||++- .-.+ .+-++
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~---------~~~~~~i~~i~~~~--------~~~~vi~g--~~~t----~~~~~ 281 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQ---------VKMISAIKAVRALD--------LGVPIVAG--NVVS----AEGVR 281 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCc---------HHHHHHHHHHHHHC--------CCCeEEEe--ccCC----HHHHH
Confidence 44444555543 59999998876543 45677888887642 46899882 1123 45567
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+.++|+|+|-+.-..-.- ... ....| + |.|.....+++.+.+++ . ++|||+.|||.++.|+.+.|.+|
T Consensus 282 ~l~~~G~d~i~vg~g~Gs~---~tt---r~~~~-~-g~~~~~a~~~~~~~~~~-~--~~~viadGgi~~~~di~kala~G 350 (475)
T TIGR01303 282 DLLEAGANIIKVGVGPGAM---CTT---RMMTG-V-GRPQFSAVLECAAEARK-L--GGHVWADGGVRHPRDVALALAAG 350 (475)
T ss_pred HHHHhCCCEEEECCcCCcc---ccC---ccccC-C-CCchHHHHHHHHHHHHH-c--CCcEEEeCCCCCHHHHHHHHHcC
Confidence 7788999999865321000 000 00111 1 22322222333333333 3 69999999999999999999999
Q ss_pred CCEEEEchhh
Q 012517 417 ATLVQLYTAF 426 (462)
Q Consensus 417 Ad~Vqv~Tal 426 (462)
|++|++++.|
T Consensus 351 A~~vm~g~~~ 360 (475)
T TIGR01303 351 ASNVMVGSWF 360 (475)
T ss_pred CCEEeechhh
Confidence 9999999987
No 109
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.54 E-value=6.2e-06 Score=87.04 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=33.8
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
.+|||+.|||.|++++..++..||+.||++|.|+.
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fla 258 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQC 258 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHh
Confidence 68999999999999999999999999999999986
No 110
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.53 E-value=5.4e-07 Score=88.88 Aligned_cols=90 Identities=29% Similarity=0.292 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+.+.|+|.+++++..... .. ....+++++++++.+ ++||++.|||.|.+|+
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~-----------~~--------~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~ 89 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASS-----------EG--------RTTMIDVVERTAETV--FIPLTVGGGIKSIEDV 89 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccc-----------cc--------ChhhHHHHHHHHHhc--CCCEEEECCCCCHHHH
Confidence 67899999999999999999875221 00 124789999999998 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+++.+||+.|+++|+++. +|++++++.+..
T Consensus 90 ~~~~~~Ga~~vivgt~~~~-~p~~~~~~~~~~ 120 (254)
T TIGR00735 90 DKLLRAGADKVSINTAAVK-NPELIYELADRF 120 (254)
T ss_pred HHHHHcCCCEEEEChhHhh-ChHHHHHHHHHc
Confidence 9999999999999999975 799999887654
No 111
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.53 E-value=3.3e-06 Score=82.85 Aligned_cols=48 Identities=23% Similarity=0.180 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 377 LSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 377 ~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
.+...+.++++++.. ++||+.-|||.+++++.+.+++ ||.|-++|+++
T Consensus 172 ~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 172 PDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred ChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 345668899999986 7999999999999999999999 99999999985
No 112
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.53 E-value=3e-06 Score=91.24 Aligned_cols=176 Identities=21% Similarity=0.304 Sum_probs=108.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
.++..++.+. + ..+.++.+.+ .+|.|.++.. |. . ...+.+.++.+++. ..+.||+
T Consensus 218 ~V~aai~~~~---~----~~e~a~~L~~agvdvivvD~a--~g--~-----~~~vl~~i~~i~~~--------~p~~~vi 273 (486)
T PRK05567 218 RVGAAVGVGA---D----NEERAEALVEAGVDVLVVDTA--HG--H-----SEGVLDRVREIKAK--------YPDVQII 273 (486)
T ss_pred EEEeecccCc---c----hHHHHHHHHHhCCCEEEEECC--CC--c-----chhHHHHHHHHHhh--------CCCCCEE
Confidence 3566665432 1 1333444433 4898887643 21 1 12344555555543 1368988
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC-CCccEE
Q 012517 320 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR-GKIPLI 398 (462)
Q Consensus 320 vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~-~~ipII 398 (462)
++=- .+ .+-+..+.++|+|+|.+.-+. +.. .. ....-|+ |.| .+..+.++++... .++|||
T Consensus 274 ~g~v--~t----~e~a~~l~~aGad~i~vg~g~-gs~--~~----~r~~~~~-g~p----~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 274 AGNV--AT----AEAARALIEAGADAVKVGIGP-GSI--CT----TRIVAGV-GVP----QITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred Eecc--CC----HHHHHHHHHcCCCEEEECCCC-Ccc--cc----ceeecCC-CcC----HHHHHHHHHHHhccCCCeEE
Confidence 8432 22 345677788999999874331 100 00 0001111 112 3456666665442 269999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhhh---------------------------------------------------
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAFA--------------------------------------------------- 427 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tali--------------------------------------------------- 427 (462)
+.|||.++.|+.++|.+|||+|++++.|.
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 99999999999999999999999999982
Q ss_pred ------hcCC--ChHHHHHHHHHHHHHHcCCCCHHHhhc
Q 012517 428 ------YGGP--ALIPQIKAELAECLERDGFKSIIEAVG 458 (462)
Q Consensus 428 ------~~GP--~~i~~i~~~L~~~l~~~G~~si~e~~G 458 (462)
|+|+ +++.++..+|+.-|.--|.+|+.|+.-
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 454 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELRE 454 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHh
Confidence 0111 245677778888899999999999873
No 113
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.53 E-value=1.3e-06 Score=84.66 Aligned_cols=79 Identities=28% Similarity=0.338 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+.+.|++.|++++.+ + .|.++|. .++.++++.+.+ .+|||++|||.|.+|+
T Consensus 147 ~~~e~~~~~~~~g~~~ii~~~~~--~------------~g~~~G~-----d~~~i~~l~~~~--~ipvia~GGi~~~~di 205 (233)
T PRK00748 147 TAEDLAKRFEDAGVKAIIYTDIS--R------------DGTLSGP-----NVEATRELAAAV--PIPVIASGGVSSLDDI 205 (233)
T ss_pred CHHHHHHHHHhcCCCEEEEeeec--C------------cCCcCCC-----CHHHHHHHHHhC--CCCEEEeCCCCCHHHH
Confidence 56789999999999999888543 1 1333442 478889999988 5999999999999999
Q ss_pred HHHHHhC-CCEEEEchhhhhc
Q 012517 410 YRKIRAG-ATLVQLYTAFAYG 429 (462)
Q Consensus 410 ~e~i~aG-Ad~Vqv~Tali~~ 429 (462)
.++++.| |+.|+++|+++.+
T Consensus 206 ~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 206 KALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHHHcCCccEEEEEHHHHcC
Confidence 9999998 9999999999653
No 114
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.52 E-value=2.7e-06 Score=83.75 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=97.0
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHH--HHhhccCC-CCCCCEEEEecCCCC--hhhHHHHHHHHHHcCC
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAA--RDEMQWGE-EGPPPLLVKIAPDLS--KEDLEDIAAVAVALRL 343 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~--~~~~~~~~-~~~~Pv~vKispdl~--~~~~~~ia~~~~~~Gv 343 (462)
.+|.+.++-. .+.+++.+.++.+..-+. .-.+.... ....|+.||++.... ..+..++++.+.+.|+
T Consensus 96 Ga~~Viigt~--------~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (253)
T PRK02083 96 GADKVSINSA--------AVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGA 167 (253)
T ss_pred CCCEEEEChh--------HhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCC
Confidence 3899888732 234556666665554100 00010000 011477888875433 2256788899999999
Q ss_pred cEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHh-CCCEEEE
Q 012517 344 DGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRA-GATLVQL 422 (462)
Q Consensus 344 dgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~a-GAd~Vqv 422 (462)
+.|++++-. +. |-.+|. .++.++++.+.+ ++|||++|||.|.+|+.+.++. ||+.|++
T Consensus 168 ~~ii~~~i~--~~------------g~~~g~-----d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gviv 226 (253)
T PRK02083 168 GEILLTSMD--RD------------GTKNGY-----DLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALA 226 (253)
T ss_pred CEEEEcCCc--CC------------CCCCCc-----CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeE
Confidence 999987532 21 112332 478889999888 6999999999999999999974 9999999
Q ss_pred chhhhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 423 YTAFAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 423 ~Tali~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
+|++.. |---+.+ +.++|++.|+.
T Consensus 227 g~al~~-~~~~~~~----~~~~~~~~~~~ 250 (253)
T PRK02083 227 ASIFHF-GEITIGE----LKAYLAEQGIP 250 (253)
T ss_pred hHHHHc-CCCCHHH----HHHHHHHCCCc
Confidence 999954 4333333 44556667763
No 115
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.51 E-value=1.3e-06 Score=84.50 Aligned_cols=79 Identities=30% Similarity=0.420 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+.+.|++.|++++.+.. |..+| ..++.++++++.+ ++|||+.|||.+.+|+
T Consensus 146 ~~~~~~~~~~~~g~~~ii~~~~~~~--------------g~~~g-----~~~~~i~~i~~~~--~ipvia~GGi~~~~di 204 (230)
T TIGR00007 146 SLEELAKRLEELGLEGIIYTDISRD--------------GTLSG-----PNFELTKELVKAV--NVPVIASGGVSSIDDL 204 (230)
T ss_pred CHHHHHHHHHhCCCCEEEEEeecCC--------------CCcCC-----CCHHHHHHHHHhC--CCCEEEeCCCCCHHHH
Confidence 5678999999999999998755421 22233 2578889999887 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhc
Q 012517 410 YRKIRAGATLVQLYTAFAYG 429 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~ 429 (462)
.+++.+||+.|+++|+++..
T Consensus 205 ~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 205 IALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHCCCCEEEEeHHHHcC
Confidence 99999999999999999753
No 116
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.2e-06 Score=90.07 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=122.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCC------CcccccCchHHHHHHHHHHHHHHhhccCCCC
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTP------GLRMLQGRKQLKDLVKKVQAARDEMQWGEEG 314 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~------glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~ 314 (462)
.+..++|-+ +++ --++.++.+.+-...+.+|+.||--. |...|.+++.+..||..+.+. .
T Consensus 83 rlilQ~gT~--sa~---lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~---------~ 148 (477)
T KOG2334|consen 83 RLILQIGTA--SAE---LALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKG---------N 148 (477)
T ss_pred eEEEEecCC--cHH---HHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhc---------C
Confidence 577888864 443 44566777777677899999999764 334567889999999998865 4
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
++|+-+||..=-+.++..++++.++..|+..|.++-.+... ++-.+...+.++.+++.++ .
T Consensus 149 ~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~------------------r~~~~~~~~~i~~i~~~~~-~ 209 (477)
T KOG2334|consen 149 KVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDE------------------RNQEPATKDYIREIAQACQ-M 209 (477)
T ss_pred cccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeecccc------------------CCCCCCCHHHHHHHHHHhc-c
Confidence 79999999954455678899999999999999998776431 1113446788999999996 4
Q ss_pred ccEEEecCCCC---HHHHHHHHH-hCCCEEEEchhhhhcCCCh
Q 012517 395 IPLIGCGGISS---GEDAYRKIR-AGATLVQLYTAFAYGGPAL 433 (462)
Q Consensus 395 ipIIg~GGI~s---~~dA~e~i~-aGAd~Vqv~Tali~~GP~~ 433 (462)
+|||..||+.+ ..|...+.. .|++.||+.++... ||..
T Consensus 210 V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~-n~Si 251 (477)
T KOG2334|consen 210 VPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES-NPSI 251 (477)
T ss_pred ceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc-CCce
Confidence 99999999999 777777775 79999999998754 5653
No 117
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.46 E-value=1.1e-06 Score=86.59 Aligned_cols=90 Identities=30% Similarity=0.330 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+.+.|++.|++++.+... .+ .+..++.++++++.+ ++||++.|||.|.+|+
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~------------~~-------~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~ 89 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASS------------EG-------RDTMLDVVERVAEQV--FIPLTVGGGIRSVEDA 89 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccc------------cc-------CcchHHHHHHHHHhC--CCCEEeeCCCCCHHHH
Confidence 77899999999999999999876311 00 124689999999998 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+++..||+.|+++|+++. +|+++.++.+..
T Consensus 90 ~~~l~~Ga~~Viigt~~l~-~p~~~~ei~~~~ 120 (253)
T PRK02083 90 RRLLRAGADKVSINSAAVA-NPELISEAADRF 120 (253)
T ss_pred HHHHHcCCCEEEEChhHhh-CcHHHHHHHHHc
Confidence 9999999999999999975 799998887764
No 118
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.45 E-value=6.3e-06 Score=79.16 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHH
Q 012517 256 AADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA 335 (462)
Q Consensus 256 ~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia 335 (462)
+.+|++.++..+ ||+|-++..-=...| ..+.++.|++.. ++||.+| +.-.+ ...+
T Consensus 33 ~~~~A~~~~~~G--A~~l~v~~~~~~~~g---------~~~~~~~i~~~v---------~iPi~~~---~~i~~--~~~v 87 (217)
T cd00331 33 PVEIAKAYEKAG--AAAISVLTEPKYFQG---------SLEDLRAVREAV---------SLPVLRK---DFIID--PYQI 87 (217)
T ss_pred HHHHHHHHHHcC--CCEEEEEeCccccCC---------CHHHHHHHHHhc---------CCCEEEC---CeecC--HHHH
Confidence 456666666555 999977642111111 114556666542 6899987 32111 1357
Q ss_pred HHHHHcCCcEEEEecCCccCCC-----------CC------CCC-------Cc---ccccCCCCCCcCccchHHHHHHHH
Q 012517 336 AVAVALRLDGLIISNTTISRPD-----------PV------SKN-------PV---AKETGGLSGKPLLSLSNNILKEMY 388 (462)
Q Consensus 336 ~~~~~~GvdgIivsNTt~~r~~-----------~~------~~~-------~~---~~~~GGlSG~~l~~~al~~v~~i~ 388 (462)
+.+.+.|+|+|++..+...... .+ ... .. ....++..+. ..+..++.+++++
T Consensus 88 ~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~-~~~~~~~~~~~l~ 166 (217)
T cd00331 88 YEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLK-TFEVDLNTTERLA 166 (217)
T ss_pred HHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCcc-ccCcCHHHHHHHH
Confidence 8889999999998765433100 00 000 00 0011111111 1234457788888
Q ss_pred HhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCC
Q 012517 389 LLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 389 ~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~ 432 (462)
+.++.++|+|+.|||.+++|+.+.+++||+.|.++|+++ +.++
T Consensus 167 ~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~-~~~~ 209 (217)
T cd00331 167 PLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLM-RAPD 209 (217)
T ss_pred HhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHc-CCCC
Confidence 886447999999999999999999999999999999995 3344
No 119
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.40 E-value=0.00013 Score=71.28 Aligned_cols=211 Identities=21% Similarity=0.181 Sum_probs=130.7
Q ss_pred cEEEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHH
Q 012517 127 GLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVA 205 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~ 205 (462)
+..+.|.+|.+++.+..| |.....+.+.+...|.-.|+|-- + |...+. ..+.+.+.
T Consensus 7 ~l~i~g~~f~SRL~lGTgky~s~~~~~~ai~aSg~evvTval---R-----------R~~~~~---------~~~~~~~l 63 (267)
T CHL00162 7 KLKIGNKSFNSRLMLGTGKYKSLKDAIQSIEASGCEIVTVAI---R-----------RLNNNL---------LNDNSNLL 63 (267)
T ss_pred ceEECCEEeecceEEecCCCCCHHHHHHHHHHhCCcEEEEEE---E-----------EeccCc---------CCCcchHH
Confidence 478999999999999988 45555566667788888776532 1 111000 01112334
Q ss_pred HHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcc-----cCcEEEEeccCC
Q 012517 206 KRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQ-----YADYLVINVSSP 280 (462)
Q Consensus 206 ~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~-----~aD~leiNvSsP 280 (462)
+.+..... .+-.|-.+ +.|.+++--.++.++.+.. .-|+|-+-|..-
T Consensus 64 ~~i~~~~~---------------------------~~LPNTaG-c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D 115 (267)
T CHL00162 64 NGLDWNKL---------------------------WLLPNTAG-CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISD 115 (267)
T ss_pred Hhhchhcc---------------------------EECCcCcC-CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCC
Confidence 43321100 12223322 2355655555666666552 468888877421
Q ss_pred CCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCC
Q 012517 281 NTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVS 360 (462)
Q Consensus 281 nt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~ 360 (462)
-+.|+ ++ ..+.+++-+.-.+ ..+-|+.=+++| ..+|+.+++.|+..|---..-+
T Consensus 116 ----~~~Ll-PD-~~etl~Aae~Lv~-------eGF~VlPY~~~D------~v~a~rLed~Gc~aVMPlgsPI------- 169 (267)
T CHL00162 116 ----PKYLL-PD-PIGTLKAAEFLVK-------KGFTVLPYINAD------PMLAKHLEDIGCATVMPLGSPI------- 169 (267)
T ss_pred ----CcccC-CC-hHHHHHHHHHHHH-------CCCEEeecCCCC------HHHHHHHHHcCCeEEeeccCcc-------
Confidence 11222 11 2355555555442 357787778776 3689999999999874221111
Q ss_pred CCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 361 KNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 361 ~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
| ||..+. ....++.+++.. ++|||.-+||.+++||.+.++.|||.|.+.|++..
T Consensus 170 --------G--Sg~Gl~--n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 170 --------G--SGQGLQ--NLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred --------c--CCCCCC--CHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence 1 222222 446677888876 69999999999999999999999999999999974
No 120
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.37 E-value=7.3e-06 Score=84.96 Aligned_cols=125 Identities=25% Similarity=0.321 Sum_probs=85.3
Q ss_pred CchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCccccc-
Q 012517 290 GRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKET- 368 (462)
Q Consensus 290 ~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~- 368 (462)
+++.+.+++++|+++ .+.||++-+ .++..++++.+.++|+|.|++++||.+. ++
T Consensus 117 ~p~l~~~ii~~vr~a------------~VtvkiRl~--~~~~~e~a~~l~eAGad~I~ihgrt~~q-----------~~~ 171 (369)
T TIGR01304 117 KPELLGERIAEVRDS------------GVITAVRVS--PQNAREIAPIVVKAGADLLVIQGTLVSA-----------EHV 171 (369)
T ss_pred ChHHHHHHHHHHHhc------------ceEEEEecC--CcCHHHHHHHHHHCCCCEEEEeccchhh-----------hcc
Confidence 456677888888753 266777653 2367899999999999999999998431 11
Q ss_pred CCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh-----hcC--CC---hHHHHH
Q 012517 369 GGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA-----YGG--PA---LIPQIK 438 (462)
Q Consensus 369 GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali-----~~G--P~---~i~~i~ 438 (462)
+| ++. ...+.++.+.+ ++|||+ |+|.|.++|.+++++|||.|+++++-. ..| .. .+.++.
T Consensus 172 sg-~~~------p~~l~~~i~~~--~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~ 241 (369)
T TIGR01304 172 ST-SGE------PLNLKEFIGEL--DVPVIA-GGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVA 241 (369)
T ss_pred CC-CCC------HHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHH
Confidence 11 122 23455666666 699997 999999999999999999999875431 112 11 334454
Q ss_pred HHHHHHHHHcC
Q 012517 439 AELAECLERDG 449 (462)
Q Consensus 439 ~~L~~~l~~~G 449 (462)
+...+++++.|
T Consensus 242 ~a~~~~~~e~g 252 (369)
T TIGR01304 242 AARRDYLDETG 252 (369)
T ss_pred HHHHHHHHhcC
Confidence 44556666554
No 121
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.35 E-value=0.00011 Score=68.32 Aligned_cols=144 Identities=22% Similarity=0.190 Sum_probs=94.1
Q ss_pred eEEEEecCCCCC--HHHHHHHHHHHHHHcc-cCcEEEEe--ccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCC
Q 012517 241 ILGVNIGKNKTS--EDAAADYVQGVHTLSQ-YADYLVIN--VSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGP 315 (462)
Q Consensus 241 ~lgvnig~nk~t--~~~~~dy~~~~~~l~~-~aD~leiN--vSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~ 315 (462)
++.+.++.+... .+ +..+.++.+.+ .+|++.+- +.++. .++.+.+.+.+++|.++. ..+
T Consensus 50 ~v~~~v~~~~~~~~~~---~~~~~a~~a~~~Gad~i~v~~~~~~~~------~~~~~~~~~~~~~i~~~~-------~~~ 113 (201)
T cd00945 50 PVIVVVGFPTGLTTTE---VKVAEVEEAIDLGADEIDVVINIGSLK------EGDWEEVLEEIAAVVEAA-------DGG 113 (201)
T ss_pred eEEEEecCCCCCCcHH---HHHHHHHHHHHcCCCEEEEeccHHHHh------CCCHHHHHHHHHHHHHHh-------cCC
Confidence 566777664101 23 34444444444 39998873 32211 112355666666666542 136
Q ss_pred CCEEEEecCCCC--hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC
Q 012517 316 PPLLVKIAPDLS--KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG 393 (462)
Q Consensus 316 ~Pv~vKispdl~--~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~ 393 (462)
.|++++..|..+ .+++.++++.+.+.|+|+|-.+.... .++ .....++++++..+.
T Consensus 114 ~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~--------------~~~--------~~~~~~~~i~~~~~~ 171 (201)
T cd00945 114 LPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG--------------GGG--------ATVEDVKLMKEAVGG 171 (201)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC--------------CCC--------CCHHHHHHHHHhccc
Confidence 899999988643 45677777778889999997553211 011 134666777777754
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCEEEE
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAGATLVQL 422 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv 422 (462)
++||+..||+.+.+++.+.+.+||+.+.+
T Consensus 172 ~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~ 200 (201)
T cd00945 172 RVGVKAAGGIKTLEDALAAIEAGADGIGT 200 (201)
T ss_pred CCcEEEECCCCCHHHHHHHHHhccceeec
Confidence 68999999999999999999999998865
No 122
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.34 E-value=4.9e-05 Score=73.35 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=114.1
Q ss_pred EEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHH
Q 012517 129 EVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKR 207 (462)
Q Consensus 129 ~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~ 207 (462)
++.|.+|.+++.+.-| |.....+-+.+...|.-.|+| ..+.+.-+.+ ++.+.+.+.
T Consensus 1 ki~g~~f~SRL~lGTgky~s~~~m~~ai~aSg~evvTv---alRR~~~~~~--------------------~~~~~~~~~ 57 (247)
T PF05690_consen 1 KIGGKEFRSRLILGTGKYPSPEVMREAIEASGAEVVTV---ALRRVNLGSK--------------------PGGDNILDY 57 (247)
T ss_dssp -ETTEEES-SEEEE-STSSSHHHHHHHHHHTT-SEEEE---ECCGSTTTS---------------------TTCHHCCCC
T ss_pred CcCCEEeecceEEecCCCCCHHHHHHHHHHhCCcEEEE---EEecccCCCC--------------------CCCccHHHH
Confidence 4789999999999988 555556666678888877754 4332211100 001111111
Q ss_pred HHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcc--cCcEEEEeccCCCCCCc
Q 012517 208 LGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQ--YADYLVINVSSPNTPGL 285 (462)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~--~aD~leiNvSsPnt~gl 285 (462)
+ .. ....+-.|-.+ +.|.+ |-+..++.+.+ .-|+|-+-|-...
T Consensus 58 i----~~-----------------------~~~~lLPNTaG-c~tA~---EAv~~A~laRe~~~t~wIKLEVi~D~---- 102 (247)
T PF05690_consen 58 I----DR-----------------------SGYTLLPNTAG-CRTAE---EAVRTARLAREAFGTNWIKLEVIGDD---- 102 (247)
T ss_dssp T----TC-----------------------CTSEEEEE-TT--SSHH---HHHHHHHHHHHTTS-SEEEE--BS-T----
T ss_pred h----cc-----------------------cCCEECCcCCC-CCCHH---HHHHHHHHHHHHcCCCeEEEEEeCCC----
Confidence 1 00 01235556544 33555 44444444444 2688888775322
Q ss_pred ccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcc
Q 012517 286 RMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVA 365 (462)
Q Consensus 286 r~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~ 365 (462)
+.|+ +| ..+.+++.+.-++ ..+-|+-=+++| .-+|+.+++.|+..|---..-++
T Consensus 103 ~~L~-PD-~~etl~Aae~Lv~-------eGF~VlPY~~~D------~v~akrL~d~GcaavMPlgsPIG----------- 156 (247)
T PF05690_consen 103 KTLL-PD-PIETLKAAEILVK-------EGFVVLPYCTDD------PVLAKRLEDAGCAAVMPLGSPIG----------- 156 (247)
T ss_dssp TT---B--HHHHHHHHHHHHH-------TT-EEEEEE-S-------HHHHHHHHHTT-SEBEEBSSSTT-----------
T ss_pred CCcC-CC-hhHHHHHHHHHHH-------CCCEEeecCCCC------HHHHHHHHHCCCCEEEecccccc-----------
Confidence 1121 11 3455666655543 367888888887 46899999999998753322111
Q ss_pred cccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 366 KETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 366 ~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
||..+. ....++.+++.. ++|||.-+||.++.||.+.++.|||.|.+-|++..
T Consensus 157 ------Sg~Gi~--n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 157 ------SGRGIQ--NPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp ------T---SS--THHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred ------cCcCCC--CHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhc
Confidence 222222 457788889888 79999999999999999999999999999999953
No 123
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.31 E-value=0.00015 Score=73.39 Aligned_cols=212 Identities=16% Similarity=0.156 Sum_probs=129.7
Q ss_pred cEEEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHH
Q 012517 127 GLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVA 205 (462)
Q Consensus 127 ~v~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~ 205 (462)
+..+.|.+|.+++.+.-| |.....+.+.+...|.-.|+|- .+- . .+.+.+-+.+.
T Consensus 74 ~~~i~~~~~~sRl~~Gtg~y~s~~~~~~a~~asg~e~vTva---~rr-----------~----------~~~~~~~~~~~ 129 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGTGKYKDFEETAAAVEASGAEIVTVA---VRR-----------V----------NVSDPGAPMLT 129 (326)
T ss_pred CeEECCEEEecceeEecCCCCCHHHHHHHHHHhCCCEEEEE---EEe-----------e----------cCcCCCcchHH
Confidence 578999999999999987 4555566666788888777552 211 1 11111222334
Q ss_pred HHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCc
Q 012517 206 KRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGL 285 (462)
Q Consensus 206 ~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~gl 285 (462)
+.|..... .+-.|-.+ +.|.+++--.++.++.+. .-|+|-+-+...+.-
T Consensus 130 ~~~~~~~~---------------------------~~lpNTag-~~ta~eAv~~a~lare~~-~~~~iKlEvi~e~~~-- 178 (326)
T PRK11840 130 DYIDPKKY---------------------------TYLPNTAG-CYTAEEAVRTLRLAREAG-GWDLVKLEVLGDAKT-- 178 (326)
T ss_pred HhhhhcCC---------------------------EECccCCC-CCCHHHHHHHHHHHHHhc-CCCeEEEEEcCCCCC--
Confidence 43432110 12223322 235554434444444432 368888888654421
Q ss_pred ccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcc
Q 012517 286 RMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVA 365 (462)
Q Consensus 286 r~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~ 365 (462)
++ ..+.+.+++.++..+ ..+-+++=+++|. ..++.+.+.|+-.|- | +.
T Consensus 179 --ll--pd~~~~v~aa~~L~~-------~Gf~v~~yc~~d~------~~a~~l~~~g~~avm--------P--l~----- 226 (326)
T PRK11840 179 --LY--PDMVETLKATEILVK-------EGFQVMVYCSDDP------IAAKRLEDAGAVAVM--------P--LG----- 226 (326)
T ss_pred --cc--cCHHHHHHHHHHHHH-------CCCEEEEEeCCCH------HHHHHHHhcCCEEEe--------e--cc-----
Confidence 11 123455555555442 3567777888774 578888888983331 1 00
Q ss_pred cccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCC
Q 012517 366 KETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 366 ~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~ 432 (462)
..-| ||.++. .-+.++.+.+.. ++|||.-+||.+++||.+.++.|||.|-+-|++.. .++
T Consensus 227 ~pIG--sg~gv~--~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~-a~d 286 (326)
T PRK11840 227 APIG--SGLGIQ--NPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAE-AKN 286 (326)
T ss_pred cccc--CCCCCC--CHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceecc-CCC
Confidence 0112 455554 446777777775 69999999999999999999999999999999963 444
No 124
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=98.26 E-value=1.5e-05 Score=82.29 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHc-c-cCcEEEEe---------ccCCCCCCcc-----cccCc-hHHHHHHHHHHHHHHhhccCCCCCCC
Q 012517 255 AAADYVQGVHTLS-Q-YADYLVIN---------VSSPNTPGLR-----MLQGR-KQLKDLVKKVQAARDEMQWGEEGPPP 317 (462)
Q Consensus 255 ~~~dy~~~~~~l~-~-~aD~leiN---------vSsPnt~glr-----~lq~~-~~l~~ll~aV~~~~~~~~~~~~~~~P 317 (462)
.+.||.-.|.++. + .+|.|||+ +-+|+|+..- ++++| +++.|++++|+++.- .--
T Consensus 171 ~V~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip--------~s~ 242 (400)
T KOG0134|consen 171 EVVDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIP--------ASR 242 (400)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhc--------ccc
Confidence 3456555444443 4 59999995 8899987432 36677 788999999998762 223
Q ss_pred EEEEecC-------CCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcc--cccCCCCCCcCccchHHHHHHHH
Q 012517 318 LLVKIAP-------DLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVA--KETGGLSGKPLLSLSNNILKEMY 388 (462)
Q Consensus 318 v~vKisp-------dl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~--~~~GGlSG~~l~~~al~~v~~i~ 388 (462)
+++.++| ..+.|+...+|...+..|+|.+-++|.+...---...+... ...++ -+++...++
T Consensus 243 ~~l~~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~---------~~~f~e~~r 313 (400)
T KOG0134|consen 243 VFLRGSPTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAF---------FVEFAETIR 313 (400)
T ss_pred ceEEecCchhhhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccc---------hhhhhhHHH
Confidence 4555555 13446778899999999999777776553211000001100 01111 245666788
Q ss_pred HhcCCCccEEEecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 389 LLTRGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 389 ~~~~~~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
...+ ..-|-+.||..+++.+.+.++.| +++|.+++.++. .|+++.|++.++.
T Consensus 314 ~~~k-gt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~a-nPDLp~rl~~~~~ 366 (400)
T KOG0134|consen 314 PVFK-GTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLA-NPDLPKRLLNGLP 366 (400)
T ss_pred HHhc-CcEEEecCCccCHHHHHHHHhcCCceeEEecchhcc-CCchhHHHHhCCC
Confidence 7774 34466677899999999999999 559999999987 5999999998764
No 125
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.24 E-value=0.00026 Score=68.61 Aligned_cols=155 Identities=16% Similarity=0.246 Sum_probs=108.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
++-|-+.-. .|+ .|++....++ +|++.+++=+. +.+.++++.+++. ..-..+
T Consensus 60 ~~dvHLMv~--~p~---~~i~~~~~~g--ad~i~~H~Ea~-----------~~~~~~l~~ik~~----------g~k~Gl 111 (220)
T PRK08883 60 PIDVHLMVK--PVD---RIIPDFAKAG--ASMITFHVEAS-----------EHVDRTLQLIKEH----------GCQAGV 111 (220)
T ss_pred CEEEEeccC--CHH---HHHHHHHHhC--CCEEEEcccCc-----------ccHHHHHHHHHHc----------CCcEEE
Confidence 355556542 465 7777766666 99999987531 2356777888764 456788
Q ss_pred EecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC---CccE
Q 012517 321 KIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG---KIPL 397 (462)
Q Consensus 321 Kispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~---~ipI 397 (462)
=+.|+.+.+.+..+++ -+|.|.+-.. .-|.+|....+..++.++++++..+. ++||
T Consensus 112 alnP~Tp~~~i~~~l~-----~~D~vlvMtV----------------~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I 170 (220)
T PRK08883 112 VLNPATPLHHLEYIMD-----KVDLILLMSV----------------NPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRL 170 (220)
T ss_pred EeCCCCCHHHHHHHHH-----hCCeEEEEEe----------------cCCCCCceecHhHHHHHHHHHHHHHhcCCCeeE
Confidence 8999876555554443 2788766421 12555666677888899999888642 4899
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHH
Q 012517 398 IGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLER 447 (462)
Q Consensus 398 Ig~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~ 447 (462)
.+-|||+ .+.+.+.+++|||.+-++|++. +..+ +.+..+++++.+.+
T Consensus 171 ~vdGGI~-~eni~~l~~aGAd~vVvGSaIf-~~~d-~~~~i~~l~~~~~~ 217 (220)
T PRK08883 171 EIDGGVK-VDNIREIAEAGADMFVAGSAIF-GQPD-YKAVIDEMRAELAK 217 (220)
T ss_pred EEECCCC-HHHHHHHHHcCCCEEEEeHHHh-CCCC-HHHHHHHHHHHHHh
Confidence 9999999 9999999999999999999975 3445 44555556655544
No 126
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.24 E-value=4.8e-05 Score=72.79 Aligned_cols=45 Identities=31% Similarity=0.348 Sum_probs=40.9
Q ss_pred ccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 377 LSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 377 ~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
.+.+.++++++++.+ ++|++..|||+|+++|.+++++|||.|.++
T Consensus 161 ~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 161 YPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 445689999999998 799999999999999999999999999875
No 127
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.22 E-value=5.1e-05 Score=81.43 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=83.3
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE-EecCCCChhhHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV-KIAPDLSKEDLEDIA 335 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v-Kispdl~~~~~~~ia 335 (462)
+..+.++.+.+ .+|.|.+..+-=+ ...+.++++.|++.. .+.+|+. -++ ..+-+
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~---------~~~~~~~i~~ik~~~--------p~~~v~agnv~-------t~~~a 282 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH---------QEKMLEALRAVRALD--------PGVPIVAGNVV-------TAEGT 282 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc---------cHHHHHHHHHHHHHC--------CCCeEEeeccC-------CHHHH
Confidence 44444555543 5999888765321 245677788887652 3567765 332 24557
Q ss_pred HHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC-CCccEEEecCCCCHHHHHHHHH
Q 012517 336 AVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR-GKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 336 ~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~-~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
+.+.++|+|+|-+.=.+-+. -. ....-|. |.| -+..|.++++... -++|||+-|||.++.|+.+.|.
T Consensus 283 ~~l~~aGad~v~vgig~gsi---ct----t~~~~~~-~~p----~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~ 350 (479)
T PRK07807 283 RDLVEAGADIVKVGVGPGAM---CT----TRMMTGV-GRP----QFSAVLECAAAARELGAHVWADGGVRHPRDVALALA 350 (479)
T ss_pred HHHHHcCCCEEEECccCCcc---cc----cccccCC-chh----HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH
Confidence 77888999999654221000 00 0001111 222 3455555555321 1699999999999999999999
Q ss_pred hCCCEEEEchhh
Q 012517 415 AGATLVQLYTAF 426 (462)
Q Consensus 415 aGAd~Vqv~Tal 426 (462)
+||+.||+++.|
T Consensus 351 ~ga~~v~~g~~~ 362 (479)
T PRK07807 351 AGASNVMIGSWF 362 (479)
T ss_pred cCCCeeeccHhh
Confidence 999999999987
No 128
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.21 E-value=8.5e-05 Score=73.35 Aligned_cols=163 Identities=25% Similarity=0.279 Sum_probs=93.5
Q ss_pred HHHHHHHHHcc-cCcEEEEec--cCCCCCC-------cccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe-----
Q 012517 258 DYVQGVHTLSQ-YADYLVINV--SSPNTPG-------LRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI----- 322 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNv--SsPnt~g-------lr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi----- 322 (462)
...+.++.+.+ .+|+||+-| |-|-..| +|-|++.-.+.++++-+++.+++ ..+.|+.+=.
T Consensus 32 ~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~-----~~~~Pivlm~Y~Npi 106 (265)
T COG0159 32 TSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAK-----GVKVPIVLMTYYNPI 106 (265)
T ss_pred HHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-----CCCCCEEEEEeccHH
Confidence 44444554433 499999864 6665543 34454433334444444444321 3466776532
Q ss_pred ---------------------cCCCChhhHHHHHHHHHHcCCcEEEEec--CCccCCCCCC----CCCcccccCCCCCCc
Q 012517 323 ---------------------APDLSKEDLEDIAAVAVALRLDGLIISN--TTISRPDPVS----KNPVAKETGGLSGKP 375 (462)
Q Consensus 323 ---------------------spdl~~~~~~~ia~~~~~~GvdgIivsN--Tt~~r~~~~~----~~~~~~~~GGlSG~~ 375 (462)
-||+..|+..++.+.++++|+|-|.+.- |+..|...+. ........-|..|..
T Consensus 107 ~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~ 186 (265)
T COG0159 107 FNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGAR 186 (265)
T ss_pred HHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCC
Confidence 2444444444555555555555543331 1111110000 000111223555554
Q ss_pred Cc--cchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 376 LL--SLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 376 l~--~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
.. ....+.++++|+.. ++||..-=||++++||.+.+.+ ||.|-++|+++.
T Consensus 187 ~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 187 NPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred cccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 33 22568889999998 7999999999999999999999 999999999963
No 129
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.19 E-value=1.1e-05 Score=78.11 Aligned_cols=90 Identities=23% Similarity=0.234 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+.+.|+|.+++..-... +.| .+...+.++++++.+ ++|++..|||.+.+||
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~----------------~~~---~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~ 88 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGA----------------KGG---EPVNLELIEEIVKAV--GIPVQVGGGIRSLEDI 88 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcc----------------ccC---CCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHH
Confidence 6789999999999999999843210 111 123578899999998 6999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+++.+|||.|.++|+++. .|+++.++.+..
T Consensus 89 ~~~~~~Gad~vvigs~~l~-dp~~~~~i~~~~ 119 (234)
T cd04732 89 ERLLDLGVSRVIIGTAAVK-NPELVKELLKEY 119 (234)
T ss_pred HHHHHcCCCEEEECchHHh-ChHHHHHHHHHc
Confidence 9999999999999999975 699988887764
No 130
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.11 E-value=0.00094 Score=66.25 Aligned_cols=209 Identities=17% Similarity=0.163 Sum_probs=119.5
Q ss_pred CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCC
Q 012517 145 FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTS 224 (462)
Q Consensus 145 ~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~ 224 (462)
++..-+.++.+.+.|.-++|+|-=+..|.. ..|.+-+- .+.++- -|++-...-.+++++++...
T Consensus 25 ~~~~~~~~~~l~~~Gad~iElGiPfSDP~a--DGpvIq~a-~~~AL~--~G~~~~~~~~~~~~~r~~~~----------- 88 (258)
T PRK13111 25 LETSLEIIKALVEAGADIIELGIPFSDPVA--DGPVIQAA-SLRALA--AGVTLADVFELVREIREKDP----------- 88 (258)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCcc--cCHHHHHH-HHHHHH--cCCCHHHHHHHHHHHHhcCC-----------
Confidence 356678899999999999999976655532 23333321 122222 24443333333333331110
Q ss_pred CCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHH
Q 012517 225 SSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAA 304 (462)
Q Consensus 225 ~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~ 304 (462)
+.|+.+=.-.|..-.-..++|.+.+..++ +|.+-|+ ++. .+...++++..++
T Consensus 89 --------------~~p~vlm~Y~N~i~~~G~e~f~~~~~~aG--vdGviip-------DLp----~ee~~~~~~~~~~- 140 (258)
T PRK13111 89 --------------TIPIVLMTYYNPIFQYGVERFAADAAEAG--VDGLIIP-------DLP----PEEAEELRAAAKK- 140 (258)
T ss_pred --------------CCCEEEEecccHHhhcCHHHHHHHHHHcC--CcEEEEC-------CCC----HHHHHHHHHHHHH-
Confidence 11332211122111113558887777776 9998884 221 1334444444433
Q ss_pred HHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHH
Q 012517 305 RDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNIL 384 (462)
Q Consensus 305 ~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v 384 (462)
.....+.=++|+.+++.+..+++. .-+.|-+.... +. +| .+ ....+...+.+
T Consensus 141 ---------~gl~~I~lvap~t~~eri~~i~~~----s~gfIY~vs~~-Gv------------TG-~~-~~~~~~~~~~i 192 (258)
T PRK13111 141 ---------HGLDLIFLVAPTTTDERLKKIASH----ASGFVYYVSRA-GV------------TG-AR-SADAADLAELV 192 (258)
T ss_pred ---------cCCcEEEEeCCCCCHHHHHHHHHh----CCCcEEEEeCC-CC------------CC-cc-cCCCccHHHHH
Confidence 256666778998876666666554 22223221110 00 01 10 01112345689
Q ss_pred HHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 385 KEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 385 ~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+++++.+ ++||+.-+||.+++|+.+.+.. ||.|-++|+++.
T Consensus 193 ~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~ 233 (258)
T PRK13111 193 ARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVK 233 (258)
T ss_pred HHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence 9999987 7999999999999999999975 999999999963
No 131
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.11 E-value=2.2e-05 Score=81.50 Aligned_cols=102 Identities=23% Similarity=0.310 Sum_probs=71.8
Q ss_pred CchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccC
Q 012517 290 GRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETG 369 (462)
Q Consensus 290 ~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~G 369 (462)
+++.+.+++++++++ .+++.+|+++ ++..++++.+.++|+|.|+++.+|.+- .++
T Consensus 116 ~p~l~~~iv~~~~~~----------~V~v~vr~~~----~~~~e~a~~l~eaGvd~I~vhgrt~~~-----------~h~ 170 (368)
T PRK08649 116 KPELITERIAEIRDA----------GVIVAVSLSP----QRAQELAPTVVEAGVDLFVIQGTVVSA-----------EHV 170 (368)
T ss_pred CHHHHHHHHHHHHhC----------eEEEEEecCC----cCHHHHHHHHHHCCCCEEEEeccchhh-----------hcc
Confidence 356677777777653 3566666643 256799999999999999999876321 111
Q ss_pred CCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchh
Q 012517 370 GLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 370 GlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Ta 425 (462)
+-.+. ...+.++.+.. ++|||+ |+|.|.++|.+++++|||.|+++.+
T Consensus 171 ~~~~~------~~~i~~~ik~~--~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 171 SKEGE------PLNLKEFIYEL--DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred CCcCC------HHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 11111 12234444445 699999 9999999999999999999999854
No 132
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.11 E-value=0.00043 Score=68.45 Aligned_cols=149 Identities=21% Similarity=0.251 Sum_probs=93.9
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
|+|||+-.| ... .=...+.... +|+|-+|+-|=....-..+.+ ....++++ -++++ +.++.|+.
T Consensus 81 p~GvnvL~n--d~~---aal~iA~a~g--a~FIRv~~~~g~~~~d~G~~~-~~a~e~~r----~r~~l----~~~v~i~a 144 (257)
T TIGR00259 81 PLGINVLRN--DAV---AALAIAMAVG--AKFIRVNVLTGVYASDQGIIE-GNAGELIR----YKKLL----GSEVKILA 144 (257)
T ss_pred CeeeeeecC--CCH---HHHHHHHHhC--CCEEEEccEeeeEeccccccc-ccHHHHHH----HHHHc----CCCcEEEe
Confidence 699999776 221 1122233333 999999876522210000111 11223333 22223 13455554
Q ss_pred Ee----cCCCChhhHHHHHHHHHHcC-CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 321 KI----APDLSKEDLEDIAAVAVALR-LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 321 Ki----spdl~~~~~~~ia~~~~~~G-vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
-+ +.-+.+..+.+.++.+...| +|||++|.+..+. +...+.++++++..+ ++
T Consensus 145 dV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~----------------------~~d~~~l~~vr~~~~-~~ 201 (257)
T TIGR00259 145 DIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTGT----------------------EVDLELLKLAKETVK-DT 201 (257)
T ss_pred ceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCC----------------------CCCHHHHHHHHhccC-CC
Confidence 33 33344457888888887777 9999999875433 235677888888664 68
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcC
Q 012517 396 PLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGG 430 (462)
Q Consensus 396 pIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~G 430 (462)
|++..|||+ ++.+.++++. ||.|-++|+|-..|
T Consensus 202 PvllggGvt-~eNv~e~l~~-adGviVgS~~K~~G 234 (257)
T TIGR00259 202 PVLAGSGVN-LENVEELLSI-ADGVIVATTIKKDG 234 (257)
T ss_pred eEEEECCCC-HHHHHHHHhh-CCEEEECCCcccCC
Confidence 999999996 9999999998 99999999996444
No 133
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.10 E-value=6.4e-05 Score=73.43 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
++.++++.+.+.|+..|++++-. + .|-++|+ .+++++++.+.+ ++|||++|||.|.+|+
T Consensus 149 ~~~~~~~~~~~~g~~~ii~tdi~--~------------dGt~~G~-----~~~li~~l~~~~--~ipvi~~GGi~s~edi 207 (234)
T PRK13587 149 NLFSFVRQLSDIPLGGIIYTDIA--K------------DGKMSGP-----NFELTGQLVKAT--TIPVIASGGIRHQQDI 207 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEeccc--C------------cCCCCcc-----CHHHHHHHHHhC--CCCEEEeCCCCCHHHH
Confidence 56899999999999999988653 2 1333443 567888998887 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhh
Q 012517 410 YRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali 427 (462)
.+.+++|++.|-++|++.
T Consensus 208 ~~l~~~G~~~vivG~a~~ 225 (234)
T PRK13587 208 QRLASLNVHAAIIGKAAH 225 (234)
T ss_pred HHHHHcCCCEEEEhHHHH
Confidence 999999999999999994
No 134
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.09 E-value=0.00019 Score=68.21 Aligned_cols=127 Identities=14% Similarity=0.071 Sum_probs=83.4
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe-cCCCChhhHHHHHHHHHHcCCcEEE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI-APDLSKEDLEDIAAVAVALRLDGLI 347 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi-spdl~~~~~~~ia~~~~~~GvdgIi 347 (462)
.||++.++..+|+ ..+.++++.+++ .+.++++-+ +|.. ..+-++.+.+.|+|.|.
T Consensus 76 Gad~i~vh~~~~~----------~~~~~~i~~~~~----------~g~~~~~~~~~~~t----~~~~~~~~~~~g~d~v~ 131 (206)
T TIGR03128 76 GADIVTVLGVADD----------ATIKGAVKAAKK----------HGKEVQVDLINVKD----KVKRAKELKELGADYIG 131 (206)
T ss_pred CCCEEEEeccCCH----------HHHHHHHHHHHH----------cCCEEEEEecCCCC----hHHHHHHHHHcCCCEEE
Confidence 3999999876542 234556666553 267888875 5542 33445556777999886
Q ss_pred EecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 348 ISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 348 vsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
+.+.+. |....+..++.++++++.++ ..+|...||| +.+.+.+++++||+.|-++|+++
T Consensus 132 ~~pg~~-------------------~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 132 VHTGLD-------------------EQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred EcCCcC-------------------cccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 632211 11111224567788888875 4677779999 89999999999999999999985
Q ss_pred hcCCChHHHHHHHHH
Q 012517 428 YGGPALIPQIKAELA 442 (462)
Q Consensus 428 ~~GP~~i~~i~~~L~ 442 (462)
+.++ +.+..+.++
T Consensus 191 -~~~d-~~~~~~~l~ 203 (206)
T TIGR03128 191 -KAAD-PAEAARQIR 203 (206)
T ss_pred -CCCC-HHHHHHHHH
Confidence 3344 444444443
No 135
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.09 E-value=0.00019 Score=67.34 Aligned_cols=120 Identities=22% Similarity=0.310 Sum_probs=77.7
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLII 348 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIiv 348 (462)
.+|.+-+.-..- .| ++.+.++++.+++. ..++|.-++. .+=+..+.+.|+|.|-
T Consensus 64 GadIIAlDaT~R----~R----p~~l~~li~~i~~~----------~~l~MADist-------~ee~~~A~~~G~D~I~- 117 (192)
T PF04131_consen 64 GADIIALDATDR----PR----PETLEELIREIKEK----------YQLVMADIST-------LEEAINAAELGFDIIG- 117 (192)
T ss_dssp T-SEEEEE-SSS----S-----SS-HHHHHHHHHHC----------TSEEEEE-SS-------HHHHHHHHHTT-SEEE-
T ss_pred CCCEEEEecCCC----CC----CcCHHHHHHHHHHh----------CcEEeeecCC-------HHHHHHHHHcCCCEEE-
Confidence 499999886321 12 26788999999863 2788888863 2335678889999763
Q ss_pred ecCCc-cCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 349 SNTTI-SRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 349 sNTt~-~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
||+ +..... .+ ....+++++++.+. ++|||+-|+|.|+++|.+.+++||+.|-++|++-
T Consensus 118 --TTLsGYT~~t--------~~-------~~pD~~lv~~l~~~---~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAIT 177 (192)
T PF04131_consen 118 --TTLSGYTPYT--------KG-------DGPDFELVRELVQA---DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAIT 177 (192)
T ss_dssp ---TTTTSSTTS--------TT-------SSHHHHHHHHHHHT---TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH
T ss_pred --cccccCCCCC--------CC-------CCCCHHHHHHHHhC---CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccC
Confidence 332 222110 11 22467899999885 5999999999999999999999999999999994
Q ss_pred hcCCChHHH
Q 012517 428 YGGPALIPQ 436 (462)
Q Consensus 428 ~~GP~~i~~ 436 (462)
.|.++.+
T Consensus 178 --rP~~It~ 184 (192)
T PF04131_consen 178 --RPQEITK 184 (192)
T ss_dssp ---HHHHHH
T ss_pred --CHHHHHH
Confidence 4765543
No 136
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.07 E-value=0.00019 Score=71.08 Aligned_cols=163 Identities=25% Similarity=0.302 Sum_probs=93.6
Q ss_pred HHHHHHHHHcc-cCcEEEEec--cCCCCCC-------cccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEec----
Q 012517 258 DYVQGVHTLSQ-YADYLVINV--SSPNTPG-------LRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIA---- 323 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNv--SsPnt~g-------lr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKis---- 323 (462)
.+.+.++.+.+ .+|+|||-+ |-|...| .|.|++.-.+..+++.+++.+.+ ..+.|+++=.=
T Consensus 25 ~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~-----~~~~pivlm~Y~N~i 99 (259)
T PF00290_consen 25 TTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKK-----EPDIPIVLMTYYNPI 99 (259)
T ss_dssp HHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-----CTSSEEEEEE-HHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhcc-----CCCCCEEEEeeccHH
Confidence 66666666665 599999974 6666654 23345554556666666655522 24678766331
Q ss_pred ----------------------CCCChhhHHHHHHHHHHcCCcEEEEec--CCccCCCCCC--CCC--cccccCCCCCCc
Q 012517 324 ----------------------PDLSKEDLEDIAAVAVALRLDGLIISN--TTISRPDPVS--KNP--VAKETGGLSGKP 375 (462)
Q Consensus 324 ----------------------pdl~~~~~~~ia~~~~~~GvdgIivsN--Tt~~r~~~~~--~~~--~~~~~GGlSG~~ 375 (462)
||+..|+..++.+.+.+.|++-|-+.. |...|...+. ... .....-|..|..
T Consensus 100 ~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~ 179 (259)
T PF00290_consen 100 FQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSR 179 (259)
T ss_dssp HHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTT
T ss_pred hccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCc
Confidence 444444444454555555554443221 1111110000 000 011123444442
Q ss_pred --CccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 376 --LLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 376 --l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+.....+.++++++.+ ++||..-=||.+++|+.+.. .|||.|-++|+++.
T Consensus 180 ~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 180 TELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp SSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred ccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 3344568899999998 79999999999999999999 99999999999974
No 137
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.04 E-value=2.1e-05 Score=76.45 Aligned_cols=131 Identities=26% Similarity=0.307 Sum_probs=84.2
Q ss_pred ccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC--CChhhHHHHHHHHHHcCCcE
Q 012517 268 QYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD--LSKEDLEDIAAVAVALRLDG 345 (462)
Q Consensus 268 ~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd--l~~~~~~~ia~~~~~~Gvdg 345 (462)
..+|.+.+|-. .+++++.+.++++..-..+=-+.-+-... ..|.+..- .+.-++.++++.+.+.|+..
T Consensus 94 ~Ga~~Vvigt~--------~~~~~~~l~~~~~~~g~~~ivvslD~~~g--~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ 163 (229)
T PF00977_consen 94 AGADRVVIGTE--------ALEDPELLEELAERYGSQRIVVSLDARDG--YKVATNGWQESSGIDLEEFAKRLEELGAGE 163 (229)
T ss_dssp TT-SEEEESHH--------HHHCCHHHHHHHHHHGGGGEEEEEEEEET--EEEEETTTTEEEEEEHHHHHHHHHHTT-SE
T ss_pred hCCCEEEeChH--------HhhchhHHHHHHHHcCcccEEEEEEeeec--eEEEecCccccCCcCHHHHHHHHHhcCCcE
Confidence 34888888753 35667777777665532100000000000 11222211 11236899999999999999
Q ss_pred EEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchh
Q 012517 346 LIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 346 IivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Ta 425 (462)
|++++-. + .|-++|+ .+++++++++.+ ++|+|++|||.+.+|..+....|++.|.++++
T Consensus 164 ii~tdi~--~------------dGt~~G~-----d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvivg~a 222 (229)
T PF00977_consen 164 IILTDID--R------------DGTMQGP-----DLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVIVGSA 222 (229)
T ss_dssp EEEEETT--T------------TTTSSS-------HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEEESHH
T ss_pred EEEeecc--c------------cCCcCCC-----CHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEEEehH
Confidence 9997542 2 2344554 468889999998 79999999999999999999999999999999
Q ss_pred hhhcC
Q 012517 426 FAYGG 430 (462)
Q Consensus 426 li~~G 430 (462)
| |+|
T Consensus 223 l-~~g 226 (229)
T PF00977_consen 223 L-HEG 226 (229)
T ss_dssp H-HTT
T ss_pred h-hCC
Confidence 9 555
No 138
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.01 E-value=4.3e-05 Score=73.38 Aligned_cols=125 Identities=24% Similarity=0.281 Sum_probs=89.1
Q ss_pred HHHHcccCcEEE--EeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe---cCCCChhhHHHHHHH
Q 012517 263 VHTLSQYADYLV--INVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI---APDLSKEDLEDIAAV 337 (462)
Q Consensus 263 ~~~l~~~aD~le--iNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi---spdl~~~~~~~ia~~ 337 (462)
-..+..+||-|. +|+.. -.-.+.+.+.+-+++|++++. + ++.+|+ ++.++++++...++.
T Consensus 84 ~~ai~~GAdEiDmVinig~------~k~g~~~~V~~eI~~v~~a~~--------~-~~~lKVIlEt~~Lt~ee~~~A~~i 148 (228)
T COG0274 84 REAIENGADEIDMVINIGA------LKSGNWEAVEREIRAVVEACA--------D-AVVLKVILETGLLTDEEKRKACEI 148 (228)
T ss_pred HHHHHcCCCeeeeeeeHHH------HhcCCHHHHHHHHHHHHHHhC--------C-CceEEEEEeccccCHHHHHHHHHH
Confidence 334445677654 45532 011344677788888888761 2 267777 577999999999999
Q ss_pred HHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCC
Q 012517 338 AVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGA 417 (462)
Q Consensus 338 ~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGA 417 (462)
+.++|+|.|--| |... .|| .+++.++.+++.+++++.|=++|||+|.+||..+|++||
T Consensus 149 ~~~aGAdFVKTS-TGf~-------------~~g--------AT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga 206 (228)
T COG0274 149 AIEAGADFVKTS-TGFS-------------AGG--------ATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGA 206 (228)
T ss_pred HHHhCCCEEEcC-CCCC-------------CCC--------CCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhH
Confidence 999999988533 2110 112 257888888998888999999999999999999999997
Q ss_pred CEEEEch
Q 012517 418 TLVQLYT 424 (462)
Q Consensus 418 d~Vqv~T 424 (462)
+-+...+
T Consensus 207 ~RiGtSs 213 (228)
T COG0274 207 TRIGTSS 213 (228)
T ss_pred HHhcccc
Confidence 6554444
No 139
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.01 E-value=0.00029 Score=69.90 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=91.0
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
+|..-++.+.+ .+|+|. - |.-+| .+.+++..+++. .+.|++.-++. + +=+.
T Consensus 75 ~~~~Ea~~L~eaGvDiID--a----T~r~r------P~~~~~~~iK~~---------~~~l~MAD~st------l-eEal 126 (283)
T cd04727 75 GHFVEAQILEALGVDMID--E----SEVLT------PADEEHHIDKHK---------FKVPFVCGARN------L-GEAL 126 (283)
T ss_pred hHHHHHHHHHHcCCCEEe--c----cCCCC------cHHHHHHHHHHH---------cCCcEEccCCC------H-HHHH
Confidence 55555555554 499994 1 11111 146777777654 26899887763 2 2255
Q ss_pred HHHHcCCcEEEEecCCcc-CCCCC----CCCC-cc---cccCCCCCC------cCccchHHHHHHHHHhcCCCccEE--E
Q 012517 337 VAVALRLDGLIISNTTIS-RPDPV----SKNP-VA---KETGGLSGK------PLLSLSNNILKEMYLLTRGKIPLI--G 399 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~-r~~~~----~~~~-~~---~~~GGlSG~------~l~~~al~~v~~i~~~~~~~ipII--g 399 (462)
.+.+.|+|.|- ||.. ....+ .+.. .. ...-||.-. ...+..++.++++.+.+ ++||| +
T Consensus 127 ~a~~~Gad~I~---TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~--~iPVV~iA 201 (283)
T cd04727 127 RRISEGAAMIR---TKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG--RLPVVNFA 201 (283)
T ss_pred HHHHCCCCEEE---ecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc--CCCeEEEE
Confidence 57789999763 3321 11100 0000 00 000111100 01234678899999988 69997 9
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHH
Q 012517 400 CGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLE 446 (462)
Q Consensus 400 ~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~ 446 (462)
.|||.+++++.+++++||+.|.++|+++. -++ +..+.+.+.+.+.
T Consensus 202 eGGI~Tpena~~v~e~GAdgVaVGSAI~~-a~d-P~~~tk~f~~ai~ 246 (283)
T cd04727 202 AGGVATPADAALMMQLGADGVFVGSGIFK-SEN-PEKRARAIVEAVT 246 (283)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEcHHhhc-CCC-HHHHHHHHHHHHH
Confidence 99999999999999999999999999964 222 3334444444443
No 140
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.01 E-value=8.6e-05 Score=72.43 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHH
Q 012517 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGED 408 (462)
Q Consensus 329 ~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~d 408 (462)
.++.++++.+.+. ++.+++++-.. .|..+|+ .++.++++.+.+ .+||++.|||.|.+|
T Consensus 146 ~~~~~~~~~~~~~-~~~li~~di~~--------------~G~~~g~-----~~~~~~~i~~~~--~ipvi~~GGi~s~ed 203 (233)
T cd04723 146 IGPEELLRRLAKW-PEELIVLDIDR--------------VGSGQGP-----DLELLERLAARA--DIPVIAAGGVRSVED 203 (233)
T ss_pred CCHHHHHHHHHHh-CCeEEEEEcCc--------------cccCCCc-----CHHHHHHHHHhc--CCCEEEeCCCCCHHH
Confidence 3678899999999 99999986531 1222332 568888998887 799999999999999
Q ss_pred HHHHHHhCCCEEEEchhhhhcC
Q 012517 409 AYRKIRAGATLVQLYTAFAYGG 430 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali~~G 430 (462)
+.+.+++||+.|-++|++. +|
T Consensus 204 i~~l~~~G~~~vivGsal~-~g 224 (233)
T cd04723 204 LELLKKLGASGALVASALH-DG 224 (233)
T ss_pred HHHHHHcCCCEEEEehHHH-cC
Confidence 9999999999999999994 45
No 141
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.00 E-value=0.00026 Score=68.90 Aligned_cols=85 Identities=28% Similarity=0.430 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
++.++++..++.|+..|+.|+-. + .|-++|+ ..+.++++.+.+ ++|+|++|||.|-+|.
T Consensus 148 ~~~~l~~~~~~~g~~~ii~TdI~--~------------DGtl~G~-----n~~l~~~l~~~~--~ipviaSGGv~s~~Di 206 (241)
T COG0106 148 ELEELAKRLEEVGLAHILYTDIS--R------------DGTLSGP-----NVDLVKELAEAV--DIPVIASGGVSSLDDI 206 (241)
T ss_pred CHHHHHHHHHhcCCCeEEEEecc--c------------ccccCCC-----CHHHHHHHHHHh--CcCEEEecCcCCHHHH
Confidence 68899999999999999998653 3 2456665 568889999999 8999999999999999
Q ss_pred HHHHHh-CCCEEEEchhhhhcCCChHHH
Q 012517 410 YRKIRA-GATLVQLYTAFAYGGPALIPQ 436 (462)
Q Consensus 410 ~e~i~a-GAd~Vqv~Tali~~GP~~i~~ 436 (462)
...-+. |...|-+++|+ |.|-.-+.+
T Consensus 207 ~~l~~~~G~~GvIvG~AL-y~g~~~l~e 233 (241)
T COG0106 207 KALKELSGVEGVIVGRAL-YEGKFTLEE 233 (241)
T ss_pred HHHHhcCCCcEEEEehHH-hcCCCCHHH
Confidence 999999 99999999999 555433333
No 142
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.99 E-value=0.00038 Score=67.61 Aligned_cols=134 Identities=20% Similarity=0.240 Sum_probs=87.7
Q ss_pred HHHHcc-cCcEE--EEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC-------CChhhHH
Q 012517 263 VHTLSQ-YADYL--VINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD-------LSKEDLE 332 (462)
Q Consensus 263 ~~~l~~-~aD~l--eiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd-------l~~~~~~ 332 (462)
++++.+ .+|.+ ++|+... . .+.+.+.+.++++.+++ ...|+++=...+ ++.+++.
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~~--------~-~~~~~~~i~~v~~~~~~------~g~~~iie~~~~g~~~~~~~~~~~i~ 146 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGSE--------E-EREMLEELARVAAEAHK------YGLPLIAWMYPRGPAVKNEKDPDLIA 146 (235)
T ss_pred HHHHHHCCCCEEEEEEecCCc--------h-HHHHHHHHHHHHHHHHH------cCCCEEEEEeccCCcccCccCHHHHH
Confidence 444433 48987 6665421 1 23344555566655443 368888844332 2345666
Q ss_pred HHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCC--CCHHH--
Q 012517 333 DIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGI--SSGED-- 408 (462)
Q Consensus 333 ~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI--~s~~d-- 408 (462)
..++.+.+.|+|.|-+.+|. .++.++++.+.+ .+||++.||| .|.+|
T Consensus 147 ~~~~~a~~~GaD~Ik~~~~~---------------------------~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l 197 (235)
T cd00958 147 YAARIGAELGADIVKTKYTG---------------------------DAESFKEVVEGC--PVPVVIAGGPKKDSEEEFL 197 (235)
T ss_pred HHHHHHHHHCCCEEEecCCC---------------------------CHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHH
Confidence 66888999999998764321 245677888877 6899999998 67766
Q ss_pred --HHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 409 --AYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 409 --A~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
+.+.+++||+.|.++++++ +.++ +.+..+.++
T Consensus 198 ~~~~~~~~~Ga~gv~vg~~i~-~~~d-p~~~~~~~~ 231 (235)
T cd00958 198 KMVYDAMEAGAAGVAVGRNIF-QRPD-PVAMLRAIS 231 (235)
T ss_pred HHHHHHHHcCCcEEEechhhh-cCCC-HHHHHHHHH
Confidence 6677899999999999996 4566 444444443
No 143
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.99 E-value=4.4e-05 Score=73.84 Aligned_cols=90 Identities=20% Similarity=0.182 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++...+.|+|.+++++-. . -+.| .+..++.++++++.+ .+||+..|||.+.+|+
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld--~--------------~~~g---~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~ 89 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLD--G--------------AKAG---KPVNLELIEAIVKAV--DIPVQVGGGIRSLETV 89 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCC--c--------------cccC---CcccHHHHHHHHHHC--CCCEEEcCCcCCHHHH
Confidence 67889999999999999998531 0 0111 123578899999988 6999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+++.+||+.|.++++++ .+|.++.++.+..
T Consensus 90 ~~~~~~Ga~~vilg~~~l-~~~~~l~ei~~~~ 120 (233)
T PRK00748 90 EALLDAGVSRVIIGTAAV-KNPELVKEACKKF 120 (233)
T ss_pred HHHHHcCCCEEEECchHH-hCHHHHHHHHHHh
Confidence 999999999999999996 5788888776654
No 144
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.98 E-value=0.00027 Score=70.36 Aligned_cols=147 Identities=21% Similarity=0.240 Sum_probs=98.3
Q ss_pred HHHHcc-cCcEEEEe--ccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEE-------ecCCCChhhHH
Q 012517 263 VHTLSQ-YADYLVIN--VSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVK-------IAPDLSKEDLE 332 (462)
Q Consensus 263 ~~~l~~-~aD~leiN--vSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vK-------ispdl~~~~~~ 332 (462)
++++.+ .+|.+.+- +.+ +. .+...+.+.+|++.+++ ...|++|= +....+.+++.
T Consensus 99 ve~A~~~Gad~v~~~~~~g~--------~~-~~~~~~~~~~v~~~~~~------~g~pl~vi~~~~g~~~e~~~~~~~i~ 163 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGS--------ET-EAEMLEDLGEVAEECEE------WGMPLLAMMYPRGPGIKNEYDPEVVA 163 (267)
T ss_pred HHHHHHcCCCEEEEEEecCC--------hh-HHHHHHHHHHHHHHHHH------cCCcEEEEEecCCCccCCCccHHHHH
Confidence 333433 58876654 432 11 23355666677766643 25788773 22334455677
Q ss_pred HHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC--CHHHHH
Q 012517 333 DIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS--SGEDAY 410 (462)
Q Consensus 333 ~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~--s~~dA~ 410 (462)
..++.+.+.|+|.|-.+ ++| ..+.++++.+.. ++||++.|||. |.+++.
T Consensus 164 ~a~~~a~e~GAD~vKt~---------------------~~~------~~~~l~~~~~~~--~ipV~a~GGi~~~~~~~~l 214 (267)
T PRK07226 164 HAARVAAELGADIVKTN---------------------YTG------DPESFREVVEGC--PVPVVIAGGPKTDTDREFL 214 (267)
T ss_pred HHHHHHHHHCCCEEeeC---------------------CCC------CHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHH
Confidence 77888899999998432 001 135566666655 69999999999 999999
Q ss_pred HHH----HhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCCCHHHhh
Q 012517 411 RKI----RAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAV 457 (462)
Q Consensus 411 e~i----~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~si~e~~ 457 (462)
+++ ++||+.+.+++.++. .++ +....+.|...+.+ | .|++|+.
T Consensus 215 ~~v~~~~~aGA~Gis~gr~i~~-~~~-p~~~~~~l~~~v~~-~-~~~~ea~ 261 (267)
T PRK07226 215 EMVRDAMEAGAAGVAVGRNVFQ-HED-PEAITRAISAVVHE-G-ASVEEAL 261 (267)
T ss_pred HHHHHHHHcCCcEEehhhhhhc-CCC-HHHHHHHHHHHHhC-C-CCHHHHH
Confidence 997 999999999999864 566 66777777776643 3 4887764
No 145
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.96 E-value=0.00017 Score=69.42 Aligned_cols=123 Identities=21% Similarity=0.214 Sum_probs=82.3
Q ss_pred HcccCcEEEEeccCCCCCCcccc--cCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe-cCCCChhhHHHHHHHHHHcC
Q 012517 266 LSQYADYLVINVSSPNTPGLRML--QGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI-APDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 266 l~~~aD~leiNvSsPnt~glr~l--q~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi-spdl~~~~~~~ia~~~~~~G 342 (462)
+...||.|++-+.- ..+ .+.+.+.+-+.+|++++ ...|+.|=+ .+.++++++...++.+.++|
T Consensus 80 v~~GAdEiDvv~n~------g~l~~g~~~~v~~ei~~i~~~~--------~g~~lKvIlE~~~L~~~ei~~a~~ia~eaG 145 (211)
T TIGR00126 80 IKYGADEVDMVINI------GALKDGNEEVVYDDIRAVVEAC--------AGVLLKVIIETGLLTDEEIRKACEICIDAG 145 (211)
T ss_pred HHcCCCEEEeecch------HhhhCCcHHHHHHHHHHHHHHc--------CCCeEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 33458887764321 111 12244555566666554 145555522 23478889999999999999
Q ss_pred CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEE
Q 012517 343 LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQL 422 (462)
Q Consensus 343 vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv 422 (462)
+|.|-.+... . .+| .+.+-++.+++.++++++|-++|||.|.+|+.+++++||+-+..
T Consensus 146 ADfvKTsTGf-~-------------~~g--------at~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 146 ADFVKTSTGF-G-------------AGG--------ATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred CCEEEeCCCC-C-------------CCC--------CCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 9988643211 0 011 25677788888887789999999999999999999999987654
Q ss_pred ch
Q 012517 423 YT 424 (462)
Q Consensus 423 ~T 424 (462)
.+
T Consensus 204 s~ 205 (211)
T TIGR00126 204 SA 205 (211)
T ss_pred ch
Confidence 43
No 146
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.91 E-value=0.0005 Score=68.26 Aligned_cols=113 Identities=22% Similarity=0.252 Sum_probs=78.9
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLII 348 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIiv 348 (462)
.||++-+..+.- ..+.+.++++..++. ..-++|=+. +..++ +.+.+.|+|-|-+
T Consensus 133 GAD~VlLi~~~l---------~~~~l~~li~~a~~l----------Gl~~lvevh------~~~E~-~~A~~~gadiIgi 186 (260)
T PRK00278 133 GADAILLIVAAL---------DDEQLKELLDYAHSL----------GLDVLVEVH------DEEEL-ERALKLGAPLIGI 186 (260)
T ss_pred CCCEEEEEeccC---------CHHHHHHHHHHHHHc----------CCeEEEEeC------CHHHH-HHHHHcCCCEEEE
Confidence 499999987541 124567777776542 456666553 22233 4566889998776
Q ss_pred ecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 349 SNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 349 sNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+|..... ++..++.+.++.+.+++..++|+.|||.+++|+.+++.+||+.|-++|+++.
T Consensus 187 n~rdl~~---------------------~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 187 NNRNLKT---------------------FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred CCCCccc---------------------ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 5543210 1113456677777776567999999999999999999999999999999974
No 147
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.89 E-value=7.2e-05 Score=71.89 Aligned_cols=90 Identities=29% Similarity=0.318 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++|+.-.+.|+|=++.-+-|-++. | +...+++|+++.+.+ .||+-.-|||.+.+|+
T Consensus 31 DpVelA~~Y~e~GADElvFlDItAs~~----------------g---r~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~ 89 (256)
T COG0107 31 DPVELAKRYNEEGADELVFLDITASSE----------------G---RETMLDVVERVAEQV--FIPLTVGGGIRSVEDA 89 (256)
T ss_pred ChHHHHHHHHHcCCCeEEEEecccccc----------------c---chhHHHHHHHHHhhc--eeeeEecCCcCCHHHH
Confidence 778999999999999998766543321 1 345789999999999 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+.+++|||=|.+-|+.++ +|.+++++.+..
T Consensus 90 ~~ll~aGADKVSINsaAv~-~p~lI~~~a~~F 120 (256)
T COG0107 90 RKLLRAGADKVSINSAAVK-DPELITEAADRF 120 (256)
T ss_pred HHHHHcCCCeeeeChhHhc-ChHHHHHHHHHh
Confidence 9999999999999999987 699999886543
No 148
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.89 E-value=0.0016 Score=63.23 Aligned_cols=154 Identities=16% Similarity=0.273 Sum_probs=95.0
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEecc-CCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 242 LGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVS-SPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 242 lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvS-sPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
+.+-+.-+ +++ ||++.+..++ ||++.+++. +. .+...+.++.+++. +.-+.+
T Consensus 68 ~~vhlmv~--~p~---d~~~~~~~~g--ad~v~vH~~q~~----------~d~~~~~~~~i~~~----------g~~iGl 120 (229)
T PLN02334 68 LDCHLMVT--NPE---DYVPDFAKAG--ASIFTFHIEQAS----------TIHLHRLIQQIKSA----------GMKAGV 120 (229)
T ss_pred EEEEeccC--CHH---HHHHHHHHcC--CCEEEEeecccc----------chhHHHHHHHHHHC----------CCeEEE
Confidence 44555432 344 7887776665 999998875 11 12233444444431 334555
Q ss_pred EecCCCChhhHHHHHHHHHHcC-CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE
Q 012517 321 KIAPDLSKEDLEDIAAVAVALR-LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG 399 (462)
Q Consensus 321 Kispdl~~~~~~~ia~~~~~~G-vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg 399 (462)
=+.|+.. .+.++.+.+.| +|.|.+.... -|.+|....+..++.++++++... ++||.+
T Consensus 121 s~~~~t~----~~~~~~~~~~~~~Dyi~~~~v~----------------pg~~~~~~~~~~~~~i~~~~~~~~-~~~I~a 179 (229)
T PLN02334 121 VLNPGTP----VEAVEPVVEKGLVDMVLVMSVE----------------PGFGGQSFIPSMMDKVRALRKKYP-ELDIEV 179 (229)
T ss_pred EECCCCC----HHHHHHHHhccCCCEEEEEEEe----------------cCCCccccCHHHHHHHHHHHHhCC-CCcEEE
Confidence 5555433 23344445553 9998663211 122333334567788888888864 589999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHH
Q 012517 400 CGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLE 446 (462)
Q Consensus 400 ~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~ 446 (462)
.||| +.+++.+.+++||+.|-++|++. +-++ +.+..+++.+.++
T Consensus 180 ~GGI-~~e~i~~l~~aGad~vvvgsai~-~~~d-~~~~~~~l~~~~~ 223 (229)
T PLN02334 180 DGGV-GPSTIDKAAEAGANVIVAGSAVF-GAPD-YAEVISGLRASVE 223 (229)
T ss_pred eCCC-CHHHHHHHHHcCCCEEEEChHHh-CCCC-HHHHHHHHHHHHH
Confidence 9999 69999999999999999999985 4455 3344444444433
No 149
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.89 E-value=9.2e-05 Score=71.80 Aligned_cols=89 Identities=27% Similarity=0.237 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+.+.|++.|++++-... |..+ +...+.++++++.+ ++||+..|||.+.+|+
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~--------------~~~~-----~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~ 89 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDAS--------------KRGR-----EPLFELISNLAEEC--FMPLTVGGGIRSLEDA 89 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCc--------------ccCC-----CCCHHHHHHHHHhC--CCCEEEECCCCCHHHH
Confidence 6788999999999999999864311 1111 23578889999988 6999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
.+++.+||+.|.++|+++ .+|+++.++.+.
T Consensus 90 ~~~~~~G~~~vilg~~~l-~~~~~~~~~~~~ 119 (232)
T TIGR03572 90 KKLLSLGADKVSINTAAL-ENPDLIEEAARR 119 (232)
T ss_pred HHHHHcCCCEEEEChhHh-cCHHHHHHHHHH
Confidence 999999999999999985 589988888754
No 150
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.89 E-value=0.00014 Score=72.28 Aligned_cols=48 Identities=25% Similarity=0.378 Sum_probs=43.8
Q ss_pred chHHHHHHHHHhcCCCccEE--EecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 379 LSNNILKEMYLLTRGKIPLI--GCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 379 ~al~~v~~i~~~~~~~ipII--g~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
..++.++++++.. ++||| +.|||.|++|+..++++||+.|.++|++..
T Consensus 184 ~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 184 VPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred CCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 4578899999977 79998 999999999999999999999999999963
No 151
>PRK07695 transcriptional regulator TenI; Provisional
Probab=97.89 E-value=0.00018 Score=68.34 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=62.4
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
+..+.+.|+|.|+++....... .. |. .+..++.++++++.+ ++||++.||| +++++.++++
T Consensus 108 a~~a~~~Gadyi~~g~v~~t~~----------k~-~~-----~~~g~~~l~~~~~~~--~ipvia~GGI-~~~~~~~~~~ 168 (201)
T PRK07695 108 AIQAEKNGADYVVYGHVFPTDC----------KK-GV-----PARGLEELSDIARAL--SIPVIAIGGI-TPENTRDVLA 168 (201)
T ss_pred HHHHHHcCCCEEEECCCCCCCC----------CC-CC-----CCCCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHH
Confidence 5667789999998765332110 00 11 122457788888887 6999999999 8999999999
Q ss_pred hCCCEEEEchhhhhcCCChHHHHHHHHHHHH
Q 012517 415 AGATLVQLYTAFAYGGPALIPQIKAELAECL 445 (462)
Q Consensus 415 aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l 445 (462)
+||+.|.+++++... ++ +....+++.+.+
T Consensus 169 ~Ga~gvav~s~i~~~-~~-p~~~~~~~~~~~ 197 (201)
T PRK07695 169 AGVSGIAVMSGIFSS-AN-PYSKAKRYAESI 197 (201)
T ss_pred cCCCEEEEEHHHhcC-CC-HHHHHHHHHHHH
Confidence 999999999999752 33 333333444444
No 152
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.88 E-value=0.00037 Score=66.47 Aligned_cols=153 Identities=22% Similarity=0.209 Sum_probs=102.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEE-eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVI-NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~lei-NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
|++||- ..++ .|..+++ ..||.+|| |+-|=...|.+ + + ..++++-.++.++.+ .+.|+-
T Consensus 63 PICVSa----Vep~---~f~~aV~---AGAdliEIGNfDsFY~qGr~-f-~---a~eVL~Lt~~tR~LL-----P~~~Ls 122 (242)
T PF04481_consen 63 PICVSA----VEPE---LFVAAVK---AGADLIEIGNFDSFYAQGRR-F-S---AEEVLALTRETRSLL-----PDITLS 122 (242)
T ss_pred CeEeec----CCHH---HHHHHHH---hCCCEEEecchHHHHhcCCe-e-c---HHHHHHHHHHHHHhC-----CCCceE
Confidence 576763 3454 6776654 34899999 87764444432 1 2 335555555554444 578999
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCc-cchHHHHHHHHHhcCCCccEE
Q 012517 320 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLL-SLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 320 vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~-~~al~~v~~i~~~~~~~ipII 398 (462)
|-++--+..++-.++|..+.+.|+|-|---+.+..++ ...|..|---+ -.++.....+.+.+ ++||+
T Consensus 123 VTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p----------~~~g~lglIekaapTLAaay~ISr~v--~iPVl 190 (242)
T PF04481_consen 123 VTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKP----------TSPGILGLIEKAAPTLAAAYAISRAV--SIPVL 190 (242)
T ss_pred EecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCC----------CCcchHHHHHHHhHHHHHHHHHHhcc--CCceE
Confidence 9998888878889999999999999775333332222 12233332111 12456667788888 79999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
..-||++ -.+=-.+.+||+.|.+++++
T Consensus 191 cASGlS~-vT~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 191 CASGLSA-VTAPMAIAAGASGVGVGSAV 217 (242)
T ss_pred eccCcch-hhHHHHHHcCCcccchhHHh
Confidence 9999974 45666789999999999997
No 153
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.88 E-value=8.2e-05 Score=72.08 Aligned_cols=76 Identities=28% Similarity=0.382 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
...++.+.+.+.|+ ++++++ .++. |-.+|+ .+++++++.+.+ ++|||++|||.|.+|+
T Consensus 142 ~~~~~~~~~~~~g~-~ii~td--I~~d------------Gt~~G~-----d~eli~~i~~~~--~~pvia~GGi~s~ed~ 199 (221)
T TIGR00734 142 SLEEVRDFLNSFDY-GLIVLD--IHSV------------GTMKGP-----NLELLTKTLELS--EHPVMLGGGISGVEDL 199 (221)
T ss_pred cHHHHHHHHHhcCC-EEEEEE--CCcc------------ccCCCC-----CHHHHHHHHhhC--CCCEEEeCCCCCHHHH
Confidence 56677778888898 888753 2332 222332 578899999988 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhh
Q 012517 410 YRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali 427 (462)
.+..++||+.|.++|++.
T Consensus 200 ~~l~~~Ga~~vivgsal~ 217 (221)
T TIGR00734 200 ELLKEMGVSAVLVATAVH 217 (221)
T ss_pred HHHHHCCCCEEEEhHHhh
Confidence 999899999999999984
No 154
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.87 E-value=0.00048 Score=68.10 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEec------CCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCccccc
Q 012517 295 KDLVKKVQAARDEMQWGEEGPPPLLVKIA------PDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKET 368 (462)
Q Consensus 295 ~~ll~aV~~~~~~~~~~~~~~~Pv~vKis------pdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~ 368 (462)
.+.+.+|++.+++ .+.|++|.+- +.++.+++...++.+.+.|+|.|-.+ . .
T Consensus 122 ~~~~~~i~~~~~~------~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~-~----------------~ 178 (258)
T TIGR01949 122 IRDLGMIAEICDD------WGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP-Y----------------T 178 (258)
T ss_pred HHHHHHHHHHHHH------cCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc-C----------------C
Confidence 3677777777653 3678888543 22344566666788889999998642 0 0
Q ss_pred CCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC--CHHHHHHHH----HhCCCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 369 GGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS--SGEDAYRKI----RAGATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 369 GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~--s~~dA~e~i----~aGAd~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
+ ..+.++++.+.. .+||.+.|||+ |.+++.+.+ ++||+.+.+++.++ +.++ +....+.+.
T Consensus 179 ~----------~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~-~~~d-p~~~~~~l~ 244 (258)
T TIGR01949 179 G----------DIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIF-QHDD-PVGITKAVC 244 (258)
T ss_pred C----------CHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhh-cCCC-HHHHHHHHH
Confidence 1 256677777766 69999999999 767776666 89999999999996 4566 555556666
Q ss_pred HHHHHcCCCCHHHh
Q 012517 443 ECLERDGFKSIIEA 456 (462)
Q Consensus 443 ~~l~~~G~~si~e~ 456 (462)
..+. +| .|++|+
T Consensus 245 ~~i~-~~-~~~~~a 256 (258)
T TIGR01949 245 KIVH-EN-ADVEEA 256 (258)
T ss_pred HHHh-CC-CCHHHh
Confidence 6543 44 577776
No 155
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.86 E-value=0.00035 Score=67.01 Aligned_cols=143 Identities=20% Similarity=0.161 Sum_probs=89.4
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
+..+.++.+.+ ....+|+-+.+|+. .+.++.+++.. ..++.|-.-.=++.+ -++
T Consensus 23 ~~~~~~~a~~~gGi~~iEvt~~~~~~------------~~~i~~l~~~~---------~~~~~iGaGTV~~~~----~~~ 77 (206)
T PRK09140 23 EALAHVGALIEAGFRAIEIPLNSPDP------------FDSIAALVKAL---------GDRALIGAGTVLSPE----QVD 77 (206)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCccH------------HHHHHHHHHHc---------CCCcEEeEEecCCHH----HHH
Confidence 66666777765 39999998877643 13444444321 234554444434433 357
Q ss_pred HHHHcCCcEEEEecCCccC------CCC--CCC---CC---cccccC----CCCCCcCccchHHHHHHHHHhcCCCccEE
Q 012517 337 VAVALRLDGLIISNTTISR------PDP--VSK---NP---VAKETG----GLSGKPLLSLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r------~~~--~~~---~~---~~~~~G----GlSG~~l~~~al~~v~~i~~~~~~~ipII 398 (462)
.+.++|+|+++..+....- .+. ... +. .....| ++ -|-.....+.++.+++.++.++|++
T Consensus 78 ~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~--Fpa~~~G~~~l~~l~~~~~~~ipvv 155 (206)
T PRK09140 78 RLADAGGRLIVTPNTDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKL--FPASQLGPAGIKALRAVLPPDVPVF 155 (206)
T ss_pred HHHHcCCCEEECCCCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEE--CCCCCCCHHHHHHHHhhcCCCCeEE
Confidence 7888999999876654221 000 000 00 000011 01 1112345678888888875469999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+.||| +.+++.+++++||+.|.++|++..
T Consensus 156 aiGGI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 156 AVGGV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred EECCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 99999 789999999999999999999964
No 156
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.81 E-value=0.0023 Score=63.30 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=92.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
|+|||+-.| +.. .=+..+.... +|++-+|..|=..-.-..+.+. ...++++. ++++ +.++.|+.
T Consensus 82 p~GVnvL~n--d~~---aalaiA~A~g--a~FIRv~~~~g~~~~d~G~~~~-~a~e~~r~----R~~l----~a~v~ila 145 (254)
T PF03437_consen 82 PVGVNVLRN--DPK---AALAIAAATG--ADFIRVNVFVGAYVTDEGIIEG-CAGELLRY----RKRL----GADVKILA 145 (254)
T ss_pred CEEeeeecC--CCH---HHHHHHHHhC--CCEEEecCEEceecccCccccc-cHHHHHHH----HHHc----CCCeEEEe
Confidence 799999776 222 1122233333 8999998765322111111111 12233332 2222 12356665
Q ss_pred Eec----CCCChhhHHHHHHHH-HHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 321 KIA----PDLSKEDLEDIAAVA-VALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 321 Kis----pdl~~~~~~~ia~~~-~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
-+. ..+...++.+.++.+ ...++|||++|....+. +.+++.++++++.++ +
T Consensus 146 DV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~----------------------~~~~~~l~~vr~~~~--~ 201 (254)
T PF03437_consen 146 DVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGE----------------------PPDPEKLKRVREAVP--V 201 (254)
T ss_pred eechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCC----------------------CCCHHHHHHHHhcCC--C
Confidence 443 334444577777665 67889999999765332 236788999999995 9
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcC
Q 012517 396 PLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGG 430 (462)
Q Consensus 396 pIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~G 430 (462)
||+..+|++ ++-+.+++.. ||.+-++|.|-.+|
T Consensus 202 PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~~G 234 (254)
T PF03437_consen 202 PVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKKDG 234 (254)
T ss_pred CEEEecCCC-HHHHHHHHHh-CCEEEEeeeeeeCC
Confidence 999888885 8999999877 99999999996544
No 157
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.81 E-value=0.0024 Score=61.56 Aligned_cols=213 Identities=20% Similarity=0.160 Sum_probs=126.2
Q ss_pred ccEEEcCeeeCCcEEeCCC-CCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHH
Q 012517 126 LGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAV 204 (462)
Q Consensus 126 L~v~v~Gl~f~NPiglAAG-~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~ 204 (462)
-..++.|.+|.+++.+.-| +......-+.+...|.-.|+| ..+ |.. ...+|-+.+
T Consensus 6 d~l~i~g~~f~SRLllGTgky~s~~~~~~av~asg~~ivTv---AlR-----------R~~----------~~~~~~~~~ 61 (262)
T COG2022 6 DMLTIAGKTFDSRLLLGTGKYPSPAVLAEAVRASGSEIVTV---ALR-----------RVN----------ATRPGGDGI 61 (262)
T ss_pred cceeecCeeeeeeEEEecCCCCCHHHHHHHHHhcCCceEEE---EEE-----------eec----------ccCCCcchH
Confidence 3567999999999999987 444455555566778776654 221 110 011333344
Q ss_pred HHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCC
Q 012517 205 AKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPG 284 (462)
Q Consensus 205 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~g 284 (462)
.+-|....- .+--|-.+ +.|.++.---++.++.+.. -|+|-+-+..-
T Consensus 62 l~~l~~~~~---------------------------~~LPNTaG-c~taeEAv~tArlARE~~~-t~wiKlEVi~d---- 108 (262)
T COG2022 62 LDLLIPLGV---------------------------TLLPNTAG-CRTAEEAVRTARLAREALG-TNWIKLEVIGD---- 108 (262)
T ss_pred HHHhhhcCc---------------------------EeCCCccc-cCCHHHHHHHHHHHHHHcc-CCeEEEEEecC----
Confidence 444432110 11112111 1244433233333333332 68888876432
Q ss_pred cccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCc
Q 012517 285 LRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPV 364 (462)
Q Consensus 285 lr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~ 364 (462)
.+.|+ +| ..+++++...-++ ..+-|+.-++.| .-+|+.+++.|+..|.=-.. |.
T Consensus 109 ~~tLl-PD-~~etl~Aae~Lv~-------eGF~VlPY~~dD------~v~arrLee~GcaavMPl~a-----------PI 162 (262)
T COG2022 109 EKTLL-PD-PIETLKAAEQLVK-------EGFVVLPYTTDD------PVLARRLEEAGCAAVMPLGA-----------PI 162 (262)
T ss_pred CcccC-CC-hHHHHHHHHHHHh-------CCCEEeeccCCC------HHHHHHHHhcCceEeccccc-----------cc
Confidence 12232 11 2355555555443 256666666655 36899999999988731100 11
Q ss_pred ccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh-cCC
Q 012517 365 AKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY-GGP 431 (462)
Q Consensus 365 ~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~-~GP 431 (462)
| ||. -..+...++.+.+.. ++|||.--||.++.||.+.++.|+|.|.+-|++-. ++|
T Consensus 163 ----G--Sg~--G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DP 220 (262)
T COG2022 163 ----G--SGL--GLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDP 220 (262)
T ss_pred ----c--CCc--CcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCCh
Confidence 1 111 223567788888888 89999999999999999999999999999999843 345
No 158
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.80 E-value=0.00099 Score=63.56 Aligned_cols=117 Identities=25% Similarity=0.269 Sum_probs=77.1
Q ss_pred cCcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEec-CCCChhhHHHHHHHHHHcCCcE
Q 012517 269 YADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIA-PDLSKEDLEDIAAVAVALRLDG 345 (462)
Q Consensus 269 ~aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKis-pdl~~~~~~~ia~~~~~~Gvdg 345 (462)
.||.+++ |++.-.. .+.+...+-+.+|++++ ...|+.|=+. +.++++++...++.+.++|+|.
T Consensus 82 GAdevdvv~~~g~~~~------~~~~~~~~ei~~v~~~~--------~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~ 147 (203)
T cd00959 82 GADEIDMVINIGALKS------GDYEAVYEEIAAVVEAC--------GGAPLKVILETGLLTDEEIIKACEIAIEAGADF 147 (203)
T ss_pred CCCEEEEeecHHHHhC------CCHHHHHHHHHHHHHhc--------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCE
Confidence 5998876 4432111 11233445555665554 1456655222 3356678999999999999998
Q ss_pred EEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEE
Q 012517 346 LIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQ 421 (462)
Q Consensus 346 IivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vq 421 (462)
|-.+ |.+ .+. ..+++.++.+++.++.++||-.+|||.|.+|+++++.+||+-+.
T Consensus 148 IKTs-TG~------------------~~~---~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 148 IKTS-TGF------------------GPG---GATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred EEcC-CCC------------------CCC---CCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 8644 321 111 12456666677766567999999999999999999999998653
No 159
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.78 E-value=0.00015 Score=70.04 Aligned_cols=88 Identities=26% Similarity=0.285 Sum_probs=69.1
Q ss_pred CCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC
Q 012517 325 DLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS 404 (462)
Q Consensus 325 dl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~ 404 (462)
+.+.+++...|.+++..|..-|-+- +||.. ...+.++++++.+. ++||+.-|||+
T Consensus 131 ~~~~e~~~ayA~aae~~g~~ivyLe---------------------~SG~~---~~~e~I~~v~~~~~-~~pl~vGGGIr 185 (219)
T cd02812 131 DLKPEDAAAYALAAEYLGMPIVYLE---------------------YSGAY---GPPEVVRAVKKVLG-DTPLIVGGGIR 185 (219)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEeC---------------------CCCCc---CCHHHHHHHHHhcC-CCCEEEeCCCC
Confidence 5666788889999999885444321 12322 35688999999874 59999999999
Q ss_pred CHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHH
Q 012517 405 SGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 405 s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~ 438 (462)
|+++|.+++++|||.|.++|++. ++|.++.++.
T Consensus 186 s~e~a~~l~~aGAD~VVVGsai~-~~p~~~~~~v 218 (219)
T cd02812 186 SGEQAKEMAEAGADTIVVGNIVE-EDPNAALETV 218 (219)
T ss_pred CHHHHHHHHHcCCCEEEECchhh-CCHHHHHHHh
Confidence 99999999999999999999995 5687776653
No 160
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.78 E-value=0.0058 Score=57.81 Aligned_cols=130 Identities=16% Similarity=0.265 Sum_probs=77.7
Q ss_pred HHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHH
Q 012517 258 DYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAV 337 (462)
Q Consensus 258 dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~ 337 (462)
+|++.+.+++ +|++.+...- .+...+.++.+++. ...+.+=++++...+.+.++
T Consensus 70 ~~~~~~~~~g--adgv~vh~~~-----------~~~~~~~~~~~~~~----------g~~~~~~~~~~t~~e~~~~~--- 123 (210)
T TIGR01163 70 RYIEDFAEAG--ADIITVHPEA-----------SEHIHRLLQLIKDL----------GAKAGIVLNPATPLEFLEYV--- 123 (210)
T ss_pred HHHHHHHHcC--CCEEEEccCC-----------chhHHHHHHHHHHc----------CCcEEEEECCCCCHHHHHHH---
Confidence 7776666555 9998885421 12223333333322 33344446665443333222
Q ss_pred HHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC---CCccEEEecCCCCHHHHHHHHH
Q 012517 338 AVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR---GKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 338 ~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~---~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
..++|.|.+.... .|.+|....+..++.++++++.++ ..+||+..|||+ ++++.+.++
T Consensus 124 --~~~~d~i~~~~~~----------------~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~ 184 (210)
T TIGR01163 124 --LPDVDLVLLMSVN----------------PGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAE 184 (210)
T ss_pred --HhhCCEEEEEEEc----------------CCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHH
Confidence 2357886543110 122333334456677777777653 237999999996 799999999
Q ss_pred hCCCEEEEchhhhhcCCCh
Q 012517 415 AGATLVQLYTAFAYGGPAL 433 (462)
Q Consensus 415 aGAd~Vqv~Tali~~GP~~ 433 (462)
+|||.+-++|++. +-++.
T Consensus 185 ~gad~iivgsai~-~~~d~ 202 (210)
T TIGR01163 185 AGADILVAGSAIF-GADDY 202 (210)
T ss_pred cCCCEEEEChHHh-CCCCH
Confidence 9999999999995 44553
No 161
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.75 E-value=0.00019 Score=70.36 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++|+...+.|+|-+++..-. .. + | .+...+.++++.+.+ .+||...|||.|.+|+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd--~~----------~-----g---~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv 90 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLD--AA----------F-----G---RGSNRELLAEVVGKL--DVKVELSGGIRDDESL 90 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecc--cc----------C-----C---CCccHHHHHHHHHHc--CCCEEEcCCCCCHHHH
Confidence 56789999999999999987421 00 0 1 223578999999998 6999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
.+++.+||+-|.++|+++. +|+++.++.+...
T Consensus 91 ~~~l~~Ga~kvviGs~~l~-~p~l~~~i~~~~~ 122 (241)
T PRK14024 91 EAALATGCARVNIGTAALE-NPEWCARVIAEHG 122 (241)
T ss_pred HHHHHCCCCEEEECchHhC-CHHHHHHHHHHhh
Confidence 9999999999999999975 7999999887654
No 162
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.73 E-value=0.00023 Score=70.50 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++...+.|++.|++++=... |..+ ...+++++++.+.+ .+||+..|||.+.+|+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~--------------~~~~-----~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~ 89 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDAS--------------KRGS-----EPNYELIENLASEC--FMPLCYGGGIKTLEQA 89 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCC--------------cCCC-----cccHHHHHHHHHhC--CCCEEECCCCCCHHHH
Confidence 6789999999999999999864311 1111 23678999999987 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+++.+||+.|-++|+++ ++|.++.++.+..
T Consensus 90 ~~l~~~G~~~vvigs~~~-~~~~~~~~~~~~~ 120 (258)
T PRK01033 90 KKIFSLGVEKVSINTAAL-EDPDLITEAAERF 120 (258)
T ss_pred HHHHHCCCCEEEEChHHh-cCHHHHHHHHHHh
Confidence 999999999999999985 6898888876554
No 163
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.72 E-value=0.00022 Score=69.43 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+.+.|++.+++.+-.... .+ .....+.++++.+.+ .+|++..|||++.+|+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~----------------~~---~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~ 91 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAF----------------EG---ERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDA 91 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhh----------------cC---CcccHHHHHHHHHHc--CCcEEEcCCcCCHHHH
Confidence 57789999999999999887533110 00 122467888888888 6999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
...+.+||+.|.+++..+. .|.++.++.+..
T Consensus 92 ~~~~~~Ga~~v~iGs~~~~-~~~~~~~i~~~~ 122 (241)
T PRK13585 92 ASLLDLGVDRVILGTAAVE-NPEIVRELSEEF 122 (241)
T ss_pred HHHHHcCCCEEEEChHHhh-ChHHHHHHHHHh
Confidence 9999999999999999964 688888877664
No 164
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.70 E-value=0.00022 Score=69.99 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+.+.|+..|++++- +|. |-++|+ .+++++++++.+ ++|||++|||.|.+|.
T Consensus 145 ~~~e~~~~~~~~g~~~ii~tdI--~rd------------Gt~~G~-----d~el~~~l~~~~--~~pviasGGv~s~~Dl 203 (241)
T PRK14114 145 DPVSLLKRLKEYGLEEIVHTEI--EKD------------GTLQEH-----DFSLTRKIAIEA--EVKVFAAGGISSENSL 203 (241)
T ss_pred CHHHHHHHHHhcCCCEEEEEee--chh------------hcCCCc-----CHHHHHHHHHHC--CCCEEEECCCCCHHHH
Confidence 5789999999999999998753 232 334554 578889999887 7999999999999999
Q ss_pred HHHHHh-----C-CCEEEEchhhhhcCCChHHHHH
Q 012517 410 YRKIRA-----G-ATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 410 ~e~i~a-----G-Ad~Vqv~Tali~~GP~~i~~i~ 438 (462)
.+..+. | ++.|-++++| |+|---+.+++
T Consensus 204 ~~l~~~~~~~~g~v~gvivg~Al-~~g~i~~~e~~ 237 (241)
T PRK14114 204 KTAQRVHRETNGLLKGVIVGRAF-LEGILTVEVMK 237 (241)
T ss_pred HHHHhcccccCCcEEEEEEehHH-HCCCCCHHHHH
Confidence 999886 6 9999999998 66654444443
No 165
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.68 E-value=0.0023 Score=60.33 Aligned_cols=124 Identities=21% Similarity=0.212 Sum_probs=80.0
Q ss_pred HHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEE-ecCCCChhhHHHHHHHH
Q 012517 260 VQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVK-IAPDLSKEDLEDIAAVA 338 (462)
Q Consensus 260 ~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vK-ispdl~~~~~~~ia~~~ 338 (462)
.+.+..++ +|++.++..++. +.+.++++.+++. +.++++= ++|+- . .+..+ +
T Consensus 70 ~~~~~~aG--ad~i~~h~~~~~----------~~~~~~i~~~~~~----------g~~~~v~~~~~~t-~---~e~~~-~ 122 (202)
T cd04726 70 AEMAFKAG--ADIVTVLGAAPL----------STIKKAVKAAKKY----------GKEVQVDLIGVED-P---EKRAK-L 122 (202)
T ss_pred HHHHHhcC--CCEEEEEeeCCH----------HHHHHHHHHHHHc----------CCeEEEEEeCCCC-H---HHHHH-H
Confidence 34444444 999999875421 2345666666542 4666665 55542 2 23334 6
Q ss_pred HHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCC
Q 012517 339 VALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGAT 418 (462)
Q Consensus 339 ~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd 418 (462)
.+.|+|.+.+. .. +. ++-.| .+...+.++++++.. ++||+..|||+ ++++.+++++|||
T Consensus 123 ~~~~~d~v~~~-~~--~~------------~~~~~---~~~~~~~i~~~~~~~--~~~i~~~GGI~-~~~i~~~~~~Gad 181 (202)
T cd04726 123 LKLGVDIVILH-RG--ID------------AQAAG---GWWPEDDLKKVKKLL--GVKVAVAGGIT-PDTLPEFKKAGAD 181 (202)
T ss_pred HHCCCCEEEEc-Cc--cc------------ccccC---CCCCHHHHHHHHhhc--CCCEEEECCcC-HHHHHHHHhcCCC
Confidence 77899987663 11 10 01111 122567777887764 79999999995 9999999999999
Q ss_pred EEEEchhhhhcCCC
Q 012517 419 LVQLYTAFAYGGPA 432 (462)
Q Consensus 419 ~Vqv~Tali~~GP~ 432 (462)
.|-++|+++ +..+
T Consensus 182 ~vvvGsai~-~~~d 194 (202)
T cd04726 182 IVIVGRAIT-GAAD 194 (202)
T ss_pred EEEEeehhc-CCCC
Confidence 999999985 3444
No 166
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.66 E-value=0.0011 Score=64.81 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
++.++++.+.+.|+..|++++-. + .|-++|+ .+++++++++.. .|+|++|||.+.+|.
T Consensus 147 ~~~e~~~~l~~~g~~~ii~tdI~--~------------dGt~~G~-----d~el~~~~~~~~---~~viasGGv~s~~Dl 204 (232)
T PRK13586 147 EVIDGIKKVNELELLGIIFTYIS--N------------EGTTKGI-----DYNVKDYARLIR---GLKEYAGGVSSDADL 204 (232)
T ss_pred CHHHHHHHHHhcCCCEEEEeccc--c------------cccCcCc-----CHHHHHHHHhCC---CCEEEECCCCCHHHH
Confidence 67899999999999999988643 2 2334554 456778887653 359999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcC
Q 012517 410 YRKIRAGATLVQLYTAFAYGG 430 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~G 430 (462)
.+..++|++.|.+++++ |+|
T Consensus 205 ~~l~~~G~~gvivg~Al-y~g 224 (232)
T PRK13586 205 EYLKNVGFDYIIVGMAF-YLG 224 (232)
T ss_pred HHHHHCCCCEEEEehhh-hcC
Confidence 99999999999999998 554
No 167
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.015 Score=55.97 Aligned_cols=201 Identities=19% Similarity=0.286 Sum_probs=132.7
Q ss_pred cEEeCCCCCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcc
Q 012517 138 PLGLAAGFDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKL 217 (462)
Q Consensus 138 PiglAAG~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~ 217 (462)
|=.|||=|.+-++.++++.+.|...+=+--. .|.--|.+ - -|. .+.+.+++.-
T Consensus 8 pSILsaD~~~l~~el~~~~~agad~iH~DVM-----DghFVPNi-------------T---fGp-~~v~~l~~~t----- 60 (220)
T COG0036 8 PSILSADFARLGEELKALEAAGADLIHIDVM-----DGHFVPNI-------------T---FGP-PVVKALRKIT----- 60 (220)
T ss_pred eehhhCCHhHHHHHHHHHHHcCCCEEEEecc-----CCCcCCCc-------------c---cCH-HHHHHHhhcC-----
Confidence 3345666889999999999999988754221 23332222 1 122 3344454321
Q ss_pred cccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHH
Q 012517 218 DETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDL 297 (462)
Q Consensus 218 ~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~l 297 (462)
+.++-|-+.-. +++ .|+....+++ ||+|.+++- + ...+.++
T Consensus 61 ---------------------~~p~DvHLMV~--~p~---~~i~~fa~ag--ad~It~H~E--~---------~~~~~r~ 101 (220)
T COG0036 61 ---------------------DLPLDVHLMVE--NPD---RYIEAFAKAG--ADIITFHAE--A---------TEHIHRT 101 (220)
T ss_pred ---------------------CCceEEEEecC--CHH---HHHHHHHHhC--CCEEEEEec--c---------CcCHHHH
Confidence 12566666543 455 7776666666 999999874 1 2345678
Q ss_pred HHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCc
Q 012517 298 VKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLL 377 (462)
Q Consensus 298 l~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~ 377 (462)
++.|++. .+-..+=+.|..+.+.+..+.+ -+|.|.+-.. .=|++|....
T Consensus 102 i~~Ik~~----------G~kaGv~lnP~Tp~~~i~~~l~-----~vD~VllMsV----------------nPGfgGQ~Fi 150 (220)
T COG0036 102 IQLIKEL----------GVKAGLVLNPATPLEALEPVLD-----DVDLVLLMSV----------------NPGFGGQKFI 150 (220)
T ss_pred HHHHHHc----------CCeEEEEECCCCCHHHHHHHHh-----hCCEEEEEeE----------------CCCCcccccC
Confidence 8888763 5667778888876555444433 2787765311 1156677778
Q ss_pred cchHHHHHHHHHhcCC--CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHH
Q 012517 378 SLSNNILKEMYLLTRG--KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 437 (462)
Q Consensus 378 ~~al~~v~~i~~~~~~--~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i 437 (462)
|..++.++++|+..+. ++-|-.-|||+ .+.+.+..++|||.+..+|++ +++.++...+
T Consensus 151 ~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSal-F~~~d~~~~i 210 (220)
T COG0036 151 PEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSAL-FGADDYKATI 210 (220)
T ss_pred HHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEE-eCCccHHHHH
Confidence 8899999999998763 46678889986 788999999999999999966 6677743333
No 168
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.62 E-value=7.4e-05 Score=72.54 Aligned_cols=58 Identities=26% Similarity=0.329 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 381 NNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 381 l~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
-+++ ++++.+. ++|+|..|||+|.++|.++.++|||.|.+++++ +++++ ++++.+.++
T Consensus 171 ~~v~-~~~~~~~-~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~i-ee~~~-~e~~~~~i~ 228 (230)
T PF01884_consen 171 EEVI-AAVKKLS-DIPLIVGGGIRSPEQAREMAEAGADTIVVGNAI-EEDPD-LEEALETIK 228 (230)
T ss_dssp HHHH-HHHHHSS-SSEEEEESS--SHHHHHHHHCTTSSEEEESCHH-HHHH--HHHHHTHHH
T ss_pred HHHH-HHHHhcC-CccEEEeCCcCCHHHHHHHHHCCCCEEEECCEE-EEcch-HHHHHHHHh
Confidence 3444 4455443 899999999999999999999999999999999 66676 566555443
No 169
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.60 E-value=0.0068 Score=59.01 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=99.9
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 012517 242 LGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVK 321 (462)
Q Consensus 242 lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vK 321 (462)
+=+-+.-+ +++ .|++.+.+++ +|++.++..++. ..+.+.++++++. ..-+.|-
T Consensus 68 lDvHLm~~--~p~---~~i~~~~~~G--ad~itvH~ea~~----------~~~~~~l~~ik~~----------G~~~gva 120 (228)
T PTZ00170 68 LDCHLMVS--NPE---KWVDDFAKAG--ASQFTFHIEATE----------DDPKAVARKIREA----------GMKVGVA 120 (228)
T ss_pred EEEEECCC--CHH---HHHHHHHHcC--CCEEEEeccCCc----------hHHHHHHHHHHHC----------CCeEEEE
Confidence 44555432 455 6666665555 999999876531 1145666666542 3567788
Q ss_pred ecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec
Q 012517 322 IAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG 401 (462)
Q Consensus 322 ispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G 401 (462)
+.|..+.+++..+. ....+|.|.+- .. + -|..|....+..++.++++++..+ +..|...|
T Consensus 121 l~p~t~~e~l~~~l---~~~~vD~Vl~m----~v-----------~-pG~~gq~~~~~~~~ki~~~~~~~~-~~~I~VdG 180 (228)
T PTZ00170 121 IKPKTPVEVLFPLI---DTDLVDMVLVM----TV-----------E-PGFGGQSFMHDMMPKVRELRKRYP-HLNIQVDG 180 (228)
T ss_pred ECCCCCHHHHHHHH---ccchhhhHHhh----hc-----------c-cCCCCcEecHHHHHHHHHHHHhcc-cCeEEECC
Confidence 88887666655443 22335655421 00 1 134455555567788888888775 57899999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHH
Q 012517 402 GISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLER 447 (462)
Q Consensus 402 GI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~ 447 (462)
||+ .+.+.++.++|||.+-++|++ ++.++ +.+..+.+.+.+++
T Consensus 181 GI~-~~ti~~~~~aGad~iVvGsaI-~~a~d-~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 181 GIN-LETIDIAADAGANVIVAGSSI-FKAKD-RKQAIELLRESVQK 223 (228)
T ss_pred CCC-HHHHHHHHHcCCCEEEEchHH-hCCCC-HHHHHHHHHHHHHH
Confidence 997 678999999999999999997 44555 45555555555543
No 170
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.59 E-value=0.00098 Score=65.84 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=76.4
Q ss_pred HcccCcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe---cCCCChhh-HHHHHHHHH
Q 012517 266 LSQYADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI---APDLSKED-LEDIAAVAV 339 (462)
Q Consensus 266 l~~~aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi---spdl~~~~-~~~ia~~~~ 339 (462)
+...||-|++ |++- +++ .+-+.+.+-+.+|++.+ +-++.+|+ ++.+++++ +...++.+.
T Consensus 93 i~~GAdEiD~Vinig~-----lk~-g~~~~v~~ei~~v~~~~---------~~~~~lKVIlEt~~L~~ee~i~~a~~~a~ 157 (257)
T PRK05283 93 IAYGADEVDVVFPYRA-----LMA-GNEQVGFELVKACKEAC---------AANVLLKVIIETGELKDEALIRKASEIAI 157 (257)
T ss_pred HHcCCCEEeeeccHHH-----HhC-CcHHHHHHHHHHHHHHh---------CCCceEEEEEeccccCCHHHHHHHHHHHH
Confidence 3345776554 6542 111 12356666777777664 11356666 45678775 899999999
Q ss_pred HcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhc-----CCCccEEEecCCCCHHHHHHHHH
Q 012517 340 ALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLT-----RGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 340 ~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~-----~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
++|+|.|--+.. +++.. .+.+.++.+++.+ ++++-|=++|||.|.+||.++|.
T Consensus 158 ~aGADFVKTSTG-------------------f~~~g---At~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ 215 (257)
T PRK05283 158 KAGADFIKTSTG-------------------KVPVN---ATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLA 215 (257)
T ss_pred HhCCCEEEcCCC-------------------CCCCC---CCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHH
Confidence 999999863321 11111 2445555565554 45789999999999999999999
Q ss_pred hCCCE
Q 012517 415 AGATL 419 (462)
Q Consensus 415 aGAd~ 419 (462)
+|.+.
T Consensus 216 ag~~~ 220 (257)
T PRK05283 216 LADEI 220 (257)
T ss_pred HHHHH
Confidence 99653
No 171
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.57 E-value=0.014 Score=56.95 Aligned_cols=155 Identities=16% Similarity=0.236 Sum_probs=104.7
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEecc-CCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVS-SPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvS-sPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
++=|-+.-+ .|+ .|++....++ +|+|.+++- |+ ..+.++++.+++. ..-..
T Consensus 61 ~~DvHLMv~--~P~---~~i~~~~~aG--ad~it~H~Ea~~-----------~~~~~~i~~Ik~~----------G~kaG 112 (229)
T PRK09722 61 PLDVHLMVT--DPQ---DYIDQLADAG--ADFITLHPETIN-----------GQAFRLIDEIRRA----------GMKVG 112 (229)
T ss_pred CeEEEEEec--CHH---HHHHHHHHcC--CCEEEECccCCc-----------chHHHHHHHHHHc----------CCCEE
Confidence 344555442 465 6776666655 999999874 21 1245677777654 46678
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC---Ccc
Q 012517 320 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG---KIP 396 (462)
Q Consensus 320 vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~---~ip 396 (462)
+-|.|+.+.+.+..+++ . +|.|.+-.. .-|++|....+.+++.|+++++..+. ++.
T Consensus 113 lalnP~T~~~~l~~~l~---~--vD~VLvMsV----------------~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~ 171 (229)
T PRK09722 113 LVLNPETPVESIKYYIH---L--LDKITVMTV----------------DPGFAGQPFIPEMLDKIAELKALRERNGLEYL 171 (229)
T ss_pred EEeCCCCCHHHHHHHHH---h--cCEEEEEEE----------------cCCCcchhccHHHHHHHHHHHHHHHhcCCCeE
Confidence 88999876555555444 2 687765321 12667888888899999999887532 466
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEchhhhhc-CCChHHHHHHHHHHHHH
Q 012517 397 LIGCGGISSGEDAYRKIRAGATLVQLYTAFAYG-GPALIPQIKAELAECLE 446 (462)
Q Consensus 397 IIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~-GP~~i~~i~~~L~~~l~ 446 (462)
|-.-|||+ .+.+.+..++|||.+-++|+.++. ..+ ..+..+.+++.++
T Consensus 172 IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~~~d-~~~~i~~l~~~~~ 220 (229)
T PRK09722 172 IEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNLDED-IDEAWDIMTAQIE 220 (229)
T ss_pred EEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCCCCC-HHHHHHHHHHHHH
Confidence 89999998 778999999999999999775554 344 4444555555443
No 172
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.56 E-value=0.00045 Score=67.50 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=72.9
Q ss_pred hHHHHHHHHHH-cCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHH
Q 012517 330 DLEDIAAVAVA-LRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGED 408 (462)
Q Consensus 330 ~~~~ia~~~~~-~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~d 408 (462)
+..++|+...+ .|+|-+++..-.-.. .| .+...++++++.+.+ .+||...|||+|.+|
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~----------------~~---~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~ 90 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAK----------------AQ---HAREFDYIKSLRRLT--TKDIEVGGGIRTKSQ 90 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccc----------------cC---CcchHHHHHHHHhhc--CCeEEEcCCcCCHHH
Confidence 55678998888 799999987432111 11 234678999999988 699999999999999
Q ss_pred HHHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 409 AYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
+.+++.+||+-|-++|..+. +|++++++.+..
T Consensus 91 v~~~l~~Ga~kvvigt~a~~-~~~~l~~~~~~f 122 (234)
T PRK13587 91 IMDYFAAGINYCIVGTKGIQ-DTDWLKEMAHTF 122 (234)
T ss_pred HHHHHHCCCCEEEECchHhc-CHHHHHHHHHHc
Confidence 99999999999999999964 799998887654
No 173
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.56 E-value=0.014 Score=55.11 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=78.3
Q ss_pred HHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHH
Q 012517 258 DYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAV 337 (462)
Q Consensus 258 dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~ 337 (462)
+|++.+..++ +|++.+..... +...+.++.+++ .+.-+.+=+.++.+.+.+..
T Consensus 71 ~~~~~~~~~g--~dgv~vh~~~~-----------~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~---- 123 (211)
T cd00429 71 RYIEAFAKAG--ADIITFHAEAT-----------DHLHRTIQLIKE----------LGMKAGVALNPGTPVEVLEP---- 123 (211)
T ss_pred HHHHHHHHcC--CCEEEECccch-----------hhHHHHHHHHHH----------CCCeEEEEecCCCCHHHHHH----
Confidence 6666666555 99998875321 122333444332 24455554555433223322
Q ss_pred HHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC---CCccEEEecCCCCHHHHHHHHH
Q 012517 338 AVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR---GKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 338 ~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~---~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
..+ ++|.|.+.... .|-+|....+..++.++++++.++ .++||+..|||+. +++.+.++
T Consensus 124 ~~~-~~d~i~~~~~~----------------~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~ 185 (211)
T cd00429 124 YLD-EVDLVLVMSVN----------------PGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAE 185 (211)
T ss_pred HHh-hCCEEEEEEEC----------------CCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHH
Confidence 222 27877653211 012232333345566777777662 1489999999995 99999999
Q ss_pred hCCCEEEEchhhhhcCCChHHH
Q 012517 415 AGATLVQLYTAFAYGGPALIPQ 436 (462)
Q Consensus 415 aGAd~Vqv~Tali~~GP~~i~~ 436 (462)
+|||.|-++|+++ +-++....
T Consensus 186 ~gad~iivgsai~-~~~~~~~~ 206 (211)
T cd00429 186 AGADVLVAGSALF-GSDDYAEA 206 (211)
T ss_pred cCCCEEEECHHHh-CCCCHHHH
Confidence 9999999999996 34554333
No 174
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.56 E-value=0.0006 Score=67.02 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
++.++++.+.+.|+..|++++-. | .|-++|+ .+++++++++.+ ++|||++|||.|.+|.
T Consensus 150 ~~~~~~~~~~~~g~~~ii~tdI~--~------------dGt~~G~-----d~~l~~~l~~~~--~~pviasGGv~s~eDl 208 (243)
T TIGR01919 150 DLEVLERLLDSGGCSRVVVTDSK--K------------DGLSGGP-----NELLLEVVAART--DAIVAASGGSSLLDDL 208 (243)
T ss_pred cHHHHHHHHHhCCCCEEEEEecC--C------------cccCCCc-----CHHHHHHHHhhC--CCCEEEECCcCCHHHH
Confidence 67899999999999999998642 3 2344554 568889999887 7999999999999999
Q ss_pred HHHH---HhCCCEEEEchhhhhcCCChHH
Q 012517 410 YRKI---RAGATLVQLYTAFAYGGPALIP 435 (462)
Q Consensus 410 ~e~i---~aGAd~Vqv~Tali~~GP~~i~ 435 (462)
.+.- ..|++.|-++++| |+|---+.
T Consensus 209 ~~l~~l~~~Gv~gvivg~Al-~~g~i~~~ 236 (243)
T TIGR01919 209 RAIKYLDEGGVSVAIGGKLL-YARFFTLE 236 (243)
T ss_pred HHHHhhccCCeeEEEEhHHH-HcCCCCHH
Confidence 9863 4699999999998 66653333
No 175
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.54 E-value=0.00035 Score=67.18 Aligned_cols=54 Identities=24% Similarity=0.532 Sum_probs=43.5
Q ss_pred CCccE--EEecCCCCHHHHHHHHHhCCCEEEEchhhh------------------hcCCChHHHHHHHHHHHHH
Q 012517 393 GKIPL--IGCGGISSGEDAYRKIRAGATLVQLYTAFA------------------YGGPALIPQIKAELAECLE 446 (462)
Q Consensus 393 ~~ipI--Ig~GGI~s~~dA~e~i~aGAd~Vqv~Tali------------------~~GP~~i~~i~~~L~~~l~ 446 (462)
+++|+ ++.|||.||.||.-++..|||.|-++|++. |++|.++.++.++|-+.|.
T Consensus 205 grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~~~yddp~~laevs~~lg~~M~ 278 (296)
T COG0214 205 GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEATTHYDDPEVLAEVSEGLGEAMK 278 (296)
T ss_pred CCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHhccccC
Confidence 46775 689999999999999999999999999985 4566666666666655543
No 176
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.54 E-value=0.00047 Score=67.12 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++...+. ++.+++..-. |-+.|. +..++.++++.+.+ .+||+..|||+|.+|+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDld----------------ga~~g~---~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv 88 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLD----------------GAFEGK---PKNLDVVKNIIRET--GLKVQVGGGLRTYESI 88 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECc----------------chhcCC---cchHHHHHHHHhhC--CCCEEEcCCCCCHHHH
Confidence 567888888887 9999885321 111222 23578899999887 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
.+++.+||+-|-++|+.+ .|++++++.+.
T Consensus 89 ~~l~~~G~~~vivGtaa~--~~~~l~~~~~~ 117 (228)
T PRK04128 89 KDAYEIGVENVIIGTKAF--DLEFLEKVTSE 117 (228)
T ss_pred HHHHHCCCCEEEECchhc--CHHHHHHHHHH
Confidence 999999999999999995 59988887654
No 177
>PRK08005 epimerase; Validated
Probab=97.54 E-value=0.015 Score=55.92 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=99.7
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
++=|-+.-+ .|+ .|++....++ +|++.+++=+. +.+.++++.+++. ..-..+
T Consensus 60 ~~DvHLMv~--~P~---~~i~~~~~~g--ad~It~H~Ea~-----------~~~~~~l~~Ik~~----------G~k~Gl 111 (210)
T PRK08005 60 PLSFHLMVS--SPQ---RWLPWLAAIR--PGWIFIHAESV-----------QNPSEILADIRAI----------GAKAGL 111 (210)
T ss_pred CeEEEeccC--CHH---HHHHHHHHhC--CCEEEEcccCc-----------cCHHHHHHHHHHc----------CCcEEE
Confidence 355556542 465 6777666666 99999987531 2355777777764 467788
Q ss_pred EecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe
Q 012517 321 KIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC 400 (462)
Q Consensus 321 Kispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~ 400 (462)
-|.|+.+.+.+..+++ -+|.|.+-... -|+.|....+.+++.|+++++..+ +..|-.-
T Consensus 112 AlnP~Tp~~~i~~~l~-----~vD~VlvMsV~----------------PGf~GQ~f~~~~~~KI~~l~~~~~-~~~I~VD 169 (210)
T PRK08005 112 ALNPATPLLPYRYLAL-----QLDALMIMTSE----------------PDGRGQQFIAAMCEKVSQSREHFP-AAECWAD 169 (210)
T ss_pred EECCCCCHHHHHHHHH-----hcCEEEEEEec----------------CCCccceecHHHHHHHHHHHHhcc-cCCEEEE
Confidence 9999876555554433 27887654221 155677778888999999998875 3579999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEchhhhhcCCC
Q 012517 401 GGISSGEDAYRKIRAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 401 GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~ 432 (462)
|||+ .+.+.+..++|||.+-++|++. +.++
T Consensus 170 GGI~-~~~i~~l~~aGad~~V~GsaiF-~~~d 199 (210)
T PRK08005 170 GGIT-LRAARLLAAAGAQHLVIGRALF-TTAN 199 (210)
T ss_pred CCCC-HHHHHHHHHCCCCEEEEChHhh-CCCC
Confidence 9997 8888899999999999999974 4455
No 178
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.54 E-value=0.0098 Score=57.79 Aligned_cols=152 Identities=14% Similarity=0.213 Sum_probs=103.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
++=|-+.-+ +|+ .|++....++ +|+|.+++=+. ..+.++++.+++. ..-..+
T Consensus 64 ~~dvHLMv~--~P~---~~i~~~~~~g--ad~I~~H~Ea~-----------~~~~~~l~~Ir~~----------g~k~Gl 115 (223)
T PRK08745 64 PIDVHLMVE--PVD---RIVPDFADAG--ATTISFHPEAS-----------RHVHRTIQLIKSH----------GCQAGL 115 (223)
T ss_pred CEEEEeccC--CHH---HHHHHHHHhC--CCEEEEcccCc-----------ccHHHHHHHHHHC----------CCceeE
Confidence 355555542 455 6766666655 99999987531 2255777777764 467788
Q ss_pred EecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC---CccE
Q 012517 321 KIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG---KIPL 397 (462)
Q Consensus 321 Kispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~---~ipI 397 (462)
-|.|+.+.+.+..+++ -+|.|.+-... =|++|....+.+++.++++++..+. ++.|
T Consensus 116 alnP~T~~~~i~~~l~-----~vD~VlvMtV~----------------PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~I 174 (223)
T PRK08745 116 VLNPATPVDILDWVLP-----ELDLVLVMSVN----------------PGFGGQAFIPSALDKLRAIRKKIDALGKPIRL 174 (223)
T ss_pred EeCCCCCHHHHHHHHh-----hcCEEEEEEEC----------------CCCCCccccHHHHHHHHHHHHHHHhcCCCeeE
Confidence 8889876555555443 27877653221 1566777778888888888887532 4678
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHH
Q 012517 398 IGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAEC 444 (462)
Q Consensus 398 Ig~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~ 444 (462)
-.-|||+ .+.+.+..++|||.+-+||++ ++.++ +....+.+++.
T Consensus 175 eVDGGI~-~eti~~l~~aGaDi~V~GSai-F~~~d-~~~~~~~lr~~ 218 (223)
T PRK08745 175 EIDGGVK-ADNIGAIAAAGADTFVAGSAI-FNAPD-YAQVIAQMRAA 218 (223)
T ss_pred EEECCCC-HHHHHHHHHcCCCEEEEChhh-hCCCC-HHHHHHHHHHH
Confidence 9999997 889999999999999999997 44455 44445555443
No 179
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.51 E-value=0.00076 Score=65.20 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++...+.|++.+++..-. . . ..| .+...+.++++++.+ .+||...|||.+.+|+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~--~--~--------~~g-------~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~ 87 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLD--G--A--------KEG-------GPVNLPVIKKIVRET--GVPVQVGGGIRSLEDV 87 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCC--c--c--------ccC-------CCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHH
Confidence 67889999999999999986321 0 0 011 123578899999988 6999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+++.+||+.|.+++.++ ++|..+.++.+.+
T Consensus 88 ~~~~~~Ga~~vvlgs~~l-~d~~~~~~~~~~~ 118 (230)
T TIGR00007 88 EKLLDLGVDRVIIGTAAV-ENPDLVKELLKEY 118 (230)
T ss_pred HHHHHcCCCEEEEChHHh-hCHHHHHHHHHHh
Confidence 999999999999999987 4687777776655
No 180
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.49 E-value=0.00025 Score=69.14 Aligned_cols=51 Identities=29% Similarity=0.382 Sum_probs=45.9
Q ss_pred chHHHHHHHHHhcCCCc-cEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCC
Q 012517 379 LSNNILKEMYLLTRGKI-PLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 379 ~al~~v~~i~~~~~~~i-pIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~ 432 (462)
...+.++++++.+ ++ ||+.-|||++.+++.+.+.+|||.|.++|++. ++|.
T Consensus 170 ~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~-~d~~ 221 (232)
T PRK04169 170 VPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIE-EDPK 221 (232)
T ss_pred CCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHh-hCHH
Confidence 3578899999988 56 99999999999999999999999999999996 5676
No 181
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.48 E-value=0.00022 Score=69.02 Aligned_cols=57 Identities=21% Similarity=0.172 Sum_probs=49.5
Q ss_pred chHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHH
Q 012517 379 LSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 437 (462)
Q Consensus 379 ~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i 437 (462)
...+.++++++.++ ++||+..|||+|.++|.+++.+|||.|.++|.+. ++|+++.++
T Consensus 165 v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~-~dp~~~~~~ 221 (223)
T TIGR01768 165 VPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIE-EDVDKALET 221 (223)
T ss_pred cCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHh-hCHHHHHHh
Confidence 35678899999875 5999999999999999999999999999999995 577776654
No 182
>PRK14057 epimerase; Provisional
Probab=97.42 E-value=0.015 Score=57.48 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=107.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 012517 242 LGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVK 321 (462)
Q Consensus 242 lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vK 321 (462)
+=|.+.-+ .|+ .|++....++ +|+|.+++-+. ..+.+.++.+++.--+. .....+.-..+-
T Consensus 78 ~DvHLMV~--~P~---~~i~~~~~aG--ad~It~H~Ea~-----------~~~~~~l~~Ir~~G~k~-~~~~~~~kaGlA 138 (254)
T PRK14057 78 KDVHLMVA--DQW---TAAQACVKAG--AHCITLQAEGD-----------IHLHHTLSWLGQQTVPV-IGGEMPVIRGIS 138 (254)
T ss_pred eeEEeeeC--CHH---HHHHHHHHhC--CCEEEEeeccc-----------cCHHHHHHHHHHcCCCc-ccccccceeEEE
Confidence 44445432 455 6777666666 99999998532 22556777777641000 000012347888
Q ss_pred ecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC---CccEE
Q 012517 322 IAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG---KIPLI 398 (462)
Q Consensus 322 ispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~---~ipII 398 (462)
|.|+.+.+.+..+++ -+|.|.+-.. .-|++|....+.+++-|+++++..+. ++.|-
T Consensus 139 lnP~Tp~e~i~~~l~-----~vD~VLvMtV----------------~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie 197 (254)
T PRK14057 139 LCPATPLDVIIPILS-----DVEVIQLLAV----------------NPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV 197 (254)
T ss_pred ECCCCCHHHHHHHHH-----hCCEEEEEEE----------------CCCCCchhccHHHHHHHHHHHHHHHhcCCCceEE
Confidence 889876555554443 2788765322 12566787888888889988887542 46688
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcC
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDG 449 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G 449 (462)
.-|||+ .+.+.+..++|||.+-++|++ ++.++ ..+..+.+++.+...|
T Consensus 198 VDGGI~-~~ti~~l~~aGad~~V~GSal-F~~~d-~~~~i~~l~~~~~~~~ 245 (254)
T PRK14057 198 IDGSLT-QDQLPSLIAQGIDRVVSGSAL-FRDDR-LVENTRSWRAMFKVAG 245 (254)
T ss_pred EECCCC-HHHHHHHHHCCCCEEEEChHh-hCCCC-HHHHHHHHHHHHhhcC
Confidence 889996 778999999999999999997 44455 5566666666665555
No 183
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.41 E-value=0.012 Score=59.67 Aligned_cols=145 Identities=13% Similarity=0.127 Sum_probs=102.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
++..+++.. +++ ++.+.++++.+ .++.+.+|+... .+...+++++++++. + +.+|+
T Consensus 125 ~~~~~~~~~--~~~---~~~~~~~~~~~~Gf~~iKik~g~~----------~~~d~~~v~~lr~~~-------g-~~~l~ 181 (316)
T cd03319 125 ETDYTISID--TPE---AMAAAAKKAAKRGFPLLKIKLGGD----------LEDDIERIRAIREAA-------P-DARLR 181 (316)
T ss_pred eeEEEEeCC--CHH---HHHHHHHHHHHcCCCEEEEEeCCC----------hhhHHHHHHHHHHhC-------C-CCeEE
Confidence 455666532 444 45555555433 589999998421 133457777777653 3 67899
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE
Q 012517 320 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG 399 (462)
Q Consensus 320 vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg 399 (462)
++....++.++..++++.+.+.+++.|- + |+.+...+.++++++.+ ++||++
T Consensus 182 vD~n~~~~~~~A~~~~~~l~~~~l~~iE---------e-----------------P~~~~d~~~~~~L~~~~--~ipIa~ 233 (316)
T cd03319 182 VDANQGWTPEEAVELLRELAELGVELIE---------Q-----------------PVPAGDDDGLAYLRDKS--PLPIMA 233 (316)
T ss_pred EeCCCCcCHHHHHHHHHHHHhcCCCEEE---------C-----------------CCCCCCHHHHHHHHhcC--CCCEEE
Confidence 9998888888999999999998887761 1 11122356678888888 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHH
Q 012517 400 CGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQI 437 (462)
Q Consensus 400 ~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i 437 (462)
.+.+.+.+|+.++++.| +|.||+-...+ .|..-..++
T Consensus 234 ~E~~~~~~~~~~~~~~~~~d~v~~~~~~~-GGi~~~~~~ 271 (316)
T cd03319 234 DESCFSAADAARLAGGGAYDGINIKLMKT-GGLTEALRI 271 (316)
T ss_pred eCCCCCHHHHHHHHhcCCCCEEEEecccc-CCHHHHHHH
Confidence 99999999999999965 99999987763 455434443
No 184
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.41 E-value=0.015 Score=56.69 Aligned_cols=152 Identities=12% Similarity=0.025 Sum_probs=102.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
++-|-+.-+ .|+ .|++...+++ +|++.+++=+. ..+.++++.+++. +..+-..+
T Consensus 70 ~~DvHLMv~--~P~---~~i~~~~~aG--ad~It~H~Ea~-----------~~~~~~l~~Ik~~--------g~~~kaGl 123 (228)
T PRK08091 70 FKDVHLMVR--DQF---EVAKACVAAG--ADIVTLQVEQT-----------HDLALTIEWLAKQ--------KTTVLIGL 123 (228)
T ss_pred CEEEEeccC--CHH---HHHHHHHHhC--CCEEEEcccCc-----------ccHHHHHHHHHHC--------CCCceEEE
Confidence 344555442 455 6777666666 99999998532 1255777777754 22237788
Q ss_pred EecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC---CccE
Q 012517 321 KIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG---KIPL 397 (462)
Q Consensus 321 Kispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~---~ipI 397 (462)
-|.|+.+.+++..+++ . +|.|.+-... -|++|....+.+++-|+++++..+. ++.|
T Consensus 124 alnP~Tp~~~i~~~l~---~--vD~VLiMtV~----------------PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~I 182 (228)
T PRK08091 124 CLCPETPISLLEPYLD---Q--IDLIQILTLD----------------PRTGTKAPSDLILDRVIQVENRLGNRRVEKLI 182 (228)
T ss_pred EECCCCCHHHHHHHHh---h--cCEEEEEEEC----------------CCCCCccccHHHHHHHHHHHHHHHhcCCCceE
Confidence 8999876555555543 2 7887654221 1556777777788888888876532 4668
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 398 IGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 398 Ig~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
-.-|||+ .+.+.+..++|||.+-++|++ ++.++ ..+..+.++
T Consensus 183 eVDGGI~-~~ti~~l~~aGaD~~V~GSal-F~~~d-~~~~i~~l~ 224 (228)
T PRK08091 183 SIDGSMT-LELASYLKQHQIDWVVSGSAL-FSQGE-LKTTLKEWK 224 (228)
T ss_pred EEECCCC-HHHHHHHHHCCCCEEEEChhh-hCCCC-HHHHHHHHH
Confidence 8889997 889999999999999999997 44455 444444443
No 185
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.40 E-value=0.0015 Score=60.61 Aligned_cols=82 Identities=24% Similarity=0.238 Sum_probs=58.4
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcC-ccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPL-LSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKI 413 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l-~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i 413 (462)
+..+.+.|+|.|.++...... +++.. .+..++.++++++.. ++||++.|||+ .+++.+.+
T Consensus 108 ~~~~~~~g~d~i~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~ 168 (196)
T cd00564 108 ALRAEELGADYVGFGPVFPTP----------------TKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVL 168 (196)
T ss_pred HHHHhhcCCCEEEECCccCCC----------------CCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHH
Confidence 455677899999886442111 01111 233567788888775 79999999995 79999999
Q ss_pred HhCCCEEEEchhhhhcCCChHHH
Q 012517 414 RAGATLVQLYTAFAYGGPALIPQ 436 (462)
Q Consensus 414 ~aGAd~Vqv~Tali~~GP~~i~~ 436 (462)
++||+.|.++|+++. .++....
T Consensus 169 ~~Ga~~i~~g~~i~~-~~~~~~~ 190 (196)
T cd00564 169 AAGADGVAVISAITG-ADDPAAA 190 (196)
T ss_pred HcCCCEEEEehHhhc-CCCHHHH
Confidence 999999999999864 3554333
No 186
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.0046 Score=58.71 Aligned_cols=132 Identities=19% Similarity=0.250 Sum_probs=86.8
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
-|.+-++.+.+ .+|.|.+.-.+-.-| +. .+.++++..+. .+.-+|.-+|. + +=+.
T Consensus 86 ptlkeVd~L~~~Ga~IIA~DaT~R~RP------~~-~~~~~i~~~k~----------~~~l~MAD~St------~-ee~l 141 (229)
T COG3010 86 PTLKEVDALAEAGADIIAFDATDRPRP------DG-DLEELIARIKY----------PGQLAMADCST------F-EEGL 141 (229)
T ss_pred ccHHHHHHHHHCCCcEEEeecccCCCC------cc-hHHHHHHHhhc----------CCcEEEeccCC------H-HHHH
Confidence 45555566655 589998886543222 11 56777777331 35566666653 1 2245
Q ss_pred HHHHcCCcEEEEecCCcc-CCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHh
Q 012517 337 VAVALRLDGLIISNTTIS-RPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRA 415 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~-r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~a 415 (462)
.+.+.|+|.| .||++ ..+ ++ +-..+....+++++.+ . ++++|+-|.+.||++|.+.++.
T Consensus 142 ~a~~~G~D~I---GTTLsGYT~-------------~~-~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~~ 201 (229)
T COG3010 142 NAHKLGFDII---GTTLSGYTG-------------YT-EKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIEI 201 (229)
T ss_pred HHHHcCCcEE---ecccccccC-------------CC-CCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHHh
Confidence 6788999965 45532 111 00 0112335688888888 3 7999999999999999999999
Q ss_pred CCCEEEEchhhhhcCCChHH
Q 012517 416 GATLVQLYTAFAYGGPALIP 435 (462)
Q Consensus 416 GAd~Vqv~Tali~~GP~~i~ 435 (462)
||++|-+++++- .|..+.
T Consensus 202 Ga~aVvVGsAIT--Rp~~It 219 (229)
T COG3010 202 GADAVVVGSAIT--RPEEIT 219 (229)
T ss_pred CCeEEEECcccC--CHHHHH
Confidence 999999999983 465443
No 187
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.38 E-value=0.00062 Score=66.25 Aligned_cols=90 Identities=29% Similarity=0.317 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++|+...+.|++-+++..=.-.+ .| ++..++.++++.+.+ .+||..-|||.+.+|+
T Consensus 30 dP~~~a~~~~~~g~~~l~ivDLdaa~----------------~g---~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~ 88 (229)
T PF00977_consen 30 DPVEVAKAFNEQGADELHIVDLDAAK----------------EG---RGSNLELIKEIAKET--GIPIQVGGGIRSIEDA 88 (229)
T ss_dssp CHHHHHHHHHHTT-SEEEEEEHHHHC----------------CT---HHHHHHHHHHHHHHS--SSEEEEESSE-SHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEEccCcc----------------cC---chhHHHHHHHHHhcC--CccEEEeCccCcHHHH
Confidence 67889999999999999987521000 11 345788999999998 5999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+.+.+||+-|-++|..+ ++|.++.++.+..
T Consensus 89 ~~ll~~Ga~~Vvigt~~~-~~~~~l~~~~~~~ 119 (229)
T PF00977_consen 89 ERLLDAGADRVVIGTEAL-EDPELLEELAERY 119 (229)
T ss_dssp HHHHHTT-SEEEESHHHH-HCCHHHHHHHHHH
T ss_pred HHHHHhCCCEEEeChHHh-hchhHHHHHHHHc
Confidence 999999999999999996 4799988887654
No 188
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=97.37 E-value=0.0061 Score=62.80 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=94.6
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
++.+.++++.+ .++.+.+.+......+ +..+...+++++|+++. +.+.+|++.....++.++..++++
T Consensus 142 ~~~~~a~~~~~~Gf~~~Kik~g~~~~~~----~~~~~d~~~v~~ir~~~-------g~~~~l~vDaN~~~~~~~a~~~~~ 210 (357)
T cd03316 142 ELAEEAKRAVAEGFTAVKLKVGGPDSGG----EDLREDLARVRAVREAV-------GPDVDLMVDANGRWDLAEAIRLAR 210 (357)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCcch----HHHHHHHHHHHHHHHhh-------CCCCEEEEECCCCCCHHHHHHHHH
Confidence 67777766644 5999999986532111 11244567777777664 347899999887788888889999
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+.+.+++.|- . |+.+...+..+++++.+ .+||++...+.+.+|+.+.++.|
T Consensus 211 ~l~~~~i~~iE-------q-------------------P~~~~~~~~~~~l~~~~--~ipi~~dE~~~~~~~~~~~i~~~ 262 (357)
T cd03316 211 ALEEYDLFWFE-------E-------------------PVPPDDLEGLARLRQAT--SVPIAAGENLYTRWEFRDLLEAG 262 (357)
T ss_pred HhCccCCCeEc-------C-------------------CCCccCHHHHHHHHHhC--CCCEEeccccccHHHHHHHHHhC
Confidence 88887765531 0 11122456778888887 69999999999999999999877
Q ss_pred -CCEEEEchhh
Q 012517 417 -ATLVQLYTAF 426 (462)
Q Consensus 417 -Ad~Vqv~Tal 426 (462)
+|+||+--..
T Consensus 263 ~~d~v~~k~~~ 273 (357)
T cd03316 263 AVDIIQPDVTK 273 (357)
T ss_pred CCCEEecCccc
Confidence 9999987655
No 189
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.36 E-value=0.051 Score=51.85 Aligned_cols=140 Identities=19% Similarity=0.279 Sum_probs=80.2
Q ss_pred HHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHH
Q 012517 258 DYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAV 337 (462)
Q Consensus 258 dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~ 337 (462)
+|.+.+..++ +|++.++...+ +...+.++.+++ .+..+.+-+.|+.+.+.+ +.
T Consensus 75 ~~i~~~~~~g--~d~v~vh~~~~-----------~~~~~~~~~~~~----------~~~~~g~~~~~~t~~e~~----~~ 127 (220)
T PRK05581 75 RYVPDFAKAG--ADIITFHVEAS-----------EHIHRLLQLIKS----------AGIKAGLVLNPATPLEPL----ED 127 (220)
T ss_pred HHHHHHHHcC--CCEEEEeeccc-----------hhHHHHHHHHHH----------cCCEEEEEECCCCCHHHH----HH
Confidence 5665555554 89998876421 222333444432 245566666655333232 32
Q ss_pred HHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC---CccEEEecCCCCHHHHHHHHH
Q 012517 338 AVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG---KIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 338 ~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~---~ipIIg~GGI~s~~dA~e~i~ 414 (462)
.. .++|.|.+. +. .+ |-+|....+..++.++++++.++. ..+|...|||+. +++.+.++
T Consensus 128 ~~-~~~d~i~~~-~~--~~-------------g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~ 189 (220)
T PRK05581 128 VL-DLLDLVLLM-SV--NP-------------GFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAE 189 (220)
T ss_pred HH-hhCCEEEEE-EE--CC-------------CCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHH
Confidence 22 347866543 21 00 222333344556777777776532 134567799998 89999999
Q ss_pred hCCCEEEEchhhhhcCCChHHHHHHHHHHH
Q 012517 415 AGATLVQLYTAFAYGGPALIPQIKAELAEC 444 (462)
Q Consensus 415 aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~ 444 (462)
+|+|.|-++|+++ +.++.. +..+++.+.
T Consensus 190 ~GaD~vvvgSai~-~~~d~~-~~~~~~~~~ 217 (220)
T PRK05581 190 AGADVFVAGSAVF-GAPDYK-EAIDSLRAE 217 (220)
T ss_pred cCCCEEEEChhhh-CCCCHH-HHHHHHHHH
Confidence 9999999999996 456643 333444443
No 190
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.36 E-value=0.0014 Score=64.86 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
++.+++....+.|++.|++++-. |. |-++|+ .+++++++++.+ ++|||++|||.|.+|.
T Consensus 164 ~~~e~~~~~~~~g~~eii~TdI~--rD------------Gtl~G~-----d~el~~~l~~~~--~ipVIASGGv~sleDi 222 (262)
T PLN02446 164 AVDEETLEFLAAYCDEFLVHGVD--VE------------GKRLGI-----DEELVALLGEHS--PIPVTYAGGVRSLDDL 222 (262)
T ss_pred CHHHHHHHHHHhCCCEEEEEEEc--CC------------CcccCC-----CHHHHHHHHhhC--CCCEEEECCCCCHHHH
Confidence 56788888889999999988642 32 334554 578889999998 7999999999999999
Q ss_pred HHHHHhC--CCEEEEchhh-hhcCC
Q 012517 410 YRKIRAG--ATLVQLYTAF-AYGGP 431 (462)
Q Consensus 410 ~e~i~aG--Ad~Vqv~Tal-i~~GP 431 (462)
.+..+.| ...|-+++++ +|+|-
T Consensus 223 ~~L~~~g~g~~gvIvGkAl~~y~g~ 247 (262)
T PLN02446 223 ERVKVAGGGRVDVTVGSALDIFGGN 247 (262)
T ss_pred HHHHHcCCCCEEEEEEeeHHHhCCC
Confidence 9999874 6789999997 36664
No 191
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.34 E-value=0.0013 Score=71.53 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++++.+++.|+..|++++- +++ |-.+|. .+++++++.+.+ ++|||++||+.+.+|.
T Consensus 439 ~~~~~~~~~~~~Gageil~t~i--d~D------------Gt~~G~-----d~~l~~~v~~~~--~ipviasGG~g~~~d~ 497 (538)
T PLN02617 439 GAYELAKAVEELGAGEILLNCI--DCD------------GQGKGF-----DIELVKLVSDAV--TIPVIASSGAGTPEHF 497 (538)
T ss_pred CHHHHHHHHHhcCCCEEEEeec--ccc------------ccccCc-----CHHHHHHHHhhC--CCCEEEECCCCCHHHH
Confidence 6789999999999999988653 332 333443 578889999998 7999999999999999
Q ss_pred HHHHH-hCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCC
Q 012517 410 YRKIR-AGATLVQLYTAFAYGGPALIPQIKAELAECLERDGF 450 (462)
Q Consensus 410 ~e~i~-aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~ 450 (462)
.+.++ .||+++..++-|.+. -.-+.++|+ +|...|+
T Consensus 498 ~~~~~~~~~~a~~aa~~fh~~-~~~~~~~k~----~l~~~gi 534 (538)
T PLN02617 498 SDVFSKTNASAALAAGIFHRK-EVPISSVKE----HLLEEGI 534 (538)
T ss_pred HHHHhcCCccEEEEEeeeccC-CCCHHHHHH----HHHHCCC
Confidence 99998 679999999988774 444656554 4445664
No 192
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.32 E-value=0.015 Score=54.61 Aligned_cols=47 Identities=30% Similarity=0.434 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 380 SNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 380 al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
.++.++++.+..+ ++||++.||| +.+++.+.+++||+.|.++++++.
T Consensus 139 g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~ 185 (196)
T TIGR00693 139 GVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQ 185 (196)
T ss_pred CHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhC
Confidence 3567777777654 5999999999 599999999999999999999963
No 193
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.30 E-value=0.0043 Score=58.46 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=83.8
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
++...++.+.+ .++.||+.+++|+. .+.++.+++.. .+ +.+=...-++. +-++
T Consensus 17 ~~~~~~~~l~~~G~~~vev~~~~~~~------------~~~i~~l~~~~--------~~--~~iGag~v~~~----~~~~ 70 (190)
T cd00452 17 DALALAEALIEGGIRAIEITLRTPGA------------LEAIRALRKEF--------PE--ALIGAGTVLTP----EQAD 70 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCChhH------------HHHHHHHHHHC--------CC--CEEEEEeCCCH----HHHH
Confidence 56666666655 49999999887642 23555555431 11 22222222332 3356
Q ss_pred HHHHcCCcEEEEecCCccC------CC--CC---CCCC---cccccCCCCC---CcCccchHHHHHHHHHhcCCCccEEE
Q 012517 337 VAVALRLDGLIISNTTISR------PD--PV---SKNP---VAKETGGLSG---KPLLSLSNNILKEMYLLTRGKIPLIG 399 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r------~~--~~---~~~~---~~~~~GGlSG---~~l~~~al~~v~~i~~~~~~~ipIIg 399 (462)
.+.+.|+|+|+..++...- .+ .+ .... ..... |..- -|..+...+.++.+++.++ .+|+++
T Consensus 71 ~a~~~Ga~~i~~p~~~~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~-Gad~i~~~p~~~~g~~~~~~l~~~~~-~~p~~a 148 (190)
T cd00452 71 AAIAAGAQFIVSPGLDPEVVKAANRAGIPLLPGVATPTEIMQALEL-GADIVKLFPAEAVGPAYIKALKGPFP-QVRFMP 148 (190)
T ss_pred HHHHcCCCEEEcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHC-CCCEEEEcCCcccCHHHHHHHHhhCC-CCeEEE
Confidence 6777899998876554220 00 00 0000 00011 1000 0111224677888887775 599999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 400 CGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 400 ~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
+||| +.+++.+++++||+.|.+++.+.
T Consensus 149 ~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 149 TGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred eCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 9999 89999999999999999999984
No 194
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.30 E-value=0.011 Score=62.93 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=82.6
Q ss_pred HHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEE-ecCCCChhhHHHHHHH
Q 012517 259 YVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVK-IAPDLSKEDLEDIAAV 337 (462)
Q Consensus 259 y~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vK-ispdl~~~~~~~ia~~ 337 (462)
+++.+..+. +|++.+.-..+ ...+.++++.+++ ...++++- +++.-+ .+.++.
T Consensus 73 ~v~~a~~aG--AdgV~v~g~~~----------~~~~~~~i~~a~~----------~G~~~~~g~~s~~t~----~e~~~~ 126 (430)
T PRK07028 73 EVEMAAKAG--ADIVCILGLAD----------DSTIEDAVRAARK----------YGVRLMADLINVPDP----VKRAVE 126 (430)
T ss_pred HHHHHHHcC--CCEEEEecCCC----------hHHHHHHHHHHHH----------cCCEEEEEecCCCCH----HHHHHH
Confidence 555555555 89988652211 0123344444443 14566663 565422 233566
Q ss_pred HHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCC
Q 012517 338 AVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGA 417 (462)
Q Consensus 338 ~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGA 417 (462)
+.+.|+|.|.+.-.. .. ...+ +..++.++++++.+ ++||++.||| +.+.+.+.+++||
T Consensus 127 a~~~GaD~I~~~pg~---~~---------~~~~-------~~~~~~l~~l~~~~--~iPI~a~GGI-~~~n~~~~l~aGA 184 (430)
T PRK07028 127 LEELGVDYINVHVGI---DQ---------QMLG-------KDPLELLKEVSEEV--SIPIAVAGGL-DAETAAKAVAAGA 184 (430)
T ss_pred HHhcCCCEEEEEecc---ch---------hhcC-------CChHHHHHHHHhhC--CCcEEEECCC-CHHHHHHHHHcCC
Confidence 778899999654211 00 0000 12356788888877 5999999999 6899999999999
Q ss_pred CEEEEchhhhhcCCChHHHHHHHHHH
Q 012517 418 TLVQLYTAFAYGGPALIPQIKAELAE 443 (462)
Q Consensus 418 d~Vqv~Tali~~GP~~i~~i~~~L~~ 443 (462)
+.|.++|+++ +.++ +++..+.+.+
T Consensus 185 dgv~vGsaI~-~~~d-~~~~~~~l~~ 208 (430)
T PRK07028 185 DIVIVGGNII-KSAD-VTEAARKIRE 208 (430)
T ss_pred CEEEEChHHc-CCCC-HHHHHHHHHH
Confidence 9999999985 3444 3333334443
No 195
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.013 Score=57.76 Aligned_cols=152 Identities=22% Similarity=0.247 Sum_probs=98.5
Q ss_pred HHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEec---C----------
Q 012517 258 DYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIA---P---------- 324 (462)
Q Consensus 258 dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKis---p---------- 324 (462)
+|++..+..+ |++|-|=.--+...| . .+.|+.++++ ..+||+.|=- |
T Consensus 70 ~ia~~Ye~~G--Aa~iSVLTd~~~F~G------s---~e~L~~v~~~---------v~~PvL~KDFiiD~yQI~~Ar~~G 129 (254)
T COG0134 70 EIAKAYEEGG--AAAISVLTDPKYFQG------S---FEDLRAVRAA---------VDLPVLRKDFIIDPYQIYEARAAG 129 (254)
T ss_pred HHHHHHHHhC--CeEEEEecCccccCC------C---HHHHHHHHHh---------cCCCeeeccCCCCHHHHHHHHHcC
Confidence 5666666655 777665322222222 1 1334555554 3789999832 1
Q ss_pred -C--------CChhhHHHHHHHHHHcCCcEEEEecCCcc--CCCCCCCCCcccccCCCCCCcC--ccchHHHHHHHHHhc
Q 012517 325 -D--------LSKEDLEDIAAVAVALRLDGLIISNTTIS--RPDPVSKNPVAKETGGLSGKPL--LSLSNNILKEMYLLT 391 (462)
Q Consensus 325 -d--------l~~~~~~~ia~~~~~~GvdgIivsNTt~~--r~~~~~~~~~~~~~GGlSG~~l--~~~al~~v~~i~~~~ 391 (462)
| ++++++.++++.+.+.|.+.++=.++--. |. +.... ..=|+.-+.| +...++...++....
T Consensus 130 ADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rA--l~~ga---~iIGINnRdL~tf~vdl~~t~~la~~~ 204 (254)
T COG0134 130 ADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERA--LKLGA---KIIGINNRDLTTLEVDLETTEKLAPLI 204 (254)
T ss_pred cccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHH--HhCCC---CEEEEeCCCcchheecHHHHHHHHhhC
Confidence 1 56778999999999999999875443211 10 00000 0001222222 234567778889999
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHH
Q 012517 392 RGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIP 435 (462)
Q Consensus 392 ~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~ 435 (462)
+.+..+|.-.||.+++|+..+...||+++-||+++|. .++.-+
T Consensus 205 p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~-~~~~~~ 247 (254)
T COG0134 205 PKDVILISESGISTPEDVRRLAKAGADAFLVGEALMR-ADDPEE 247 (254)
T ss_pred CCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhc-CCCHHH
Confidence 8889999999999999999999999999999999986 476533
No 196
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.29 E-value=0.0014 Score=71.49 Aligned_cols=95 Identities=22% Similarity=0.107 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH--
Q 012517 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG-- 406 (462)
Q Consensus 329 ~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~-- 406 (462)
.+..++|+...+.|+|-|++.+-+-.+ +|.+-+...+++|+++.+.+ .+|+-.-|||+|-
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~----------------~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d 328 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFR----------------DFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTD 328 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCc----------------CCcccchhHHHHHHHHHhhC--CCCEEEcCCcccccc
Confidence 377899999999999999988755322 12223445689999999998 6999999999997
Q ss_pred ---------HHHHHHHHhCCCEEEEchhhhhc-----------CCChHHHHHHHH
Q 012517 407 ---------EDAYRKIRAGATLVQLYTAFAYG-----------GPALIPQIKAEL 441 (462)
Q Consensus 407 ---------~dA~e~i~aGAd~Vqv~Tali~~-----------GP~~i~~i~~~L 441 (462)
++|.+++++|||=|.|.|+.+.. +|.+++++.+..
T Consensus 329 ~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~f 383 (538)
T PLN02617 329 ANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVY 383 (538)
T ss_pred ccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHc
Confidence 66999999999999999999874 468888776654
No 197
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.28 E-value=0.04 Score=53.43 Aligned_cols=104 Identities=20% Similarity=0.120 Sum_probs=67.3
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccE
Q 012517 318 LLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPL 397 (462)
Q Consensus 318 v~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipI 397 (462)
.+|-+|.--+.++ +..+.+.|+|.|.++-- . +. . + . ...+..++.++.+.+.+ ++|+
T Consensus 111 ~iiG~s~~~s~~~----a~~A~~~gaDYv~~Gpv-~--t~-t-K------~------~~~p~gl~~l~~~~~~~--~iPv 167 (221)
T PRK06512 111 MIVGFGNLRDRHG----AMEIGELRPDYLFFGKL-G--AD-N-K------P------EAHPRNLSLAEWWAEMI--EIPC 167 (221)
T ss_pred CEEEecCCCCHHH----HHHhhhcCCCEEEECCC-C--CC-C-C------C------CCCCCChHHHHHHHHhC--CCCE
Confidence 3566653223222 23356799999988632 1 10 0 0 0 01223456677788877 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHH
Q 012517 398 IGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLER 447 (462)
Q Consensus 398 Ig~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~ 447 (462)
++.||| +.+++.+.+++||+.|.+-++++. -++ +....+++.+.++.
T Consensus 168 vAIGGI-~~~n~~~~~~~GA~giAvisai~~-~~d-p~~a~~~~~~~~~~ 214 (221)
T PRK06512 168 IVQAGS-DLASAVEVAETGAEFVALERAVFD-AHD-PPLAVAQANALLDE 214 (221)
T ss_pred EEEeCC-CHHHHHHHHHhCCCEEEEhHHhhC-CCC-HHHHHHHHHHHHhh
Confidence 999999 799999999999999999999974 355 33333455555543
No 198
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.26 E-value=0.0011 Score=62.89 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=34.5
Q ss_pred CCccE--EEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChH
Q 012517 393 GKIPL--IGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALI 434 (462)
Q Consensus 393 ~~ipI--Ig~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i 434 (462)
+++|+ ++.|||.||.||.-+++.|+|.|-++|++. .+++-+
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiF-ks~dP~ 248 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIF-KSGDPV 248 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccc-cCCCHH
Confidence 57776 689999999999999999999999999985 344433
No 199
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0013 Score=63.53 Aligned_cols=95 Identities=20% Similarity=0.345 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..+.++.+++.|+-=|.++ . +++++ ..-|| .+++++.+++.+ ++|+|++||..+++|.
T Consensus 156 d~~~Wa~~~e~~GAGEIlLt-s-mD~DG---------tk~Gy--------Dl~l~~~v~~~v--~iPvIASGGaG~~ehf 214 (256)
T COG0107 156 DAVEWAKEVEELGAGEILLT-S-MDRDG---------TKAGY--------DLELTRAVREAV--NIPVIASGGAGKPEHF 214 (256)
T ss_pred CHHHHHHHHHHcCCceEEEe-e-ecccc---------cccCc--------CHHHHHHHHHhC--CCCEEecCCCCcHHHH
Confidence 67899999999998776654 2 23322 11132 678999999999 8999999999999999
Q ss_pred HHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCC
Q 012517 410 YRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELAECLERDGF 450 (462)
Q Consensus 410 ~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~ 450 (462)
++.+..| ||++-..+-|.|+ -..+.+ ++++|.++|+
T Consensus 215 ~eaf~~~~adAaLAAsiFH~~-~~~i~e----vK~yL~~~gi 251 (256)
T COG0107 215 VEAFTEGKADAALAASIFHFG-EITIGE----VKEYLAEQGI 251 (256)
T ss_pred HHHHHhcCccHHHhhhhhhcC-cccHHH----HHHHHHHcCC
Confidence 9999888 9999999988774 444544 5567777876
No 200
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.25 E-value=0.021 Score=55.45 Aligned_cols=145 Identities=21% Similarity=0.275 Sum_probs=88.4
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCC---CcccccCchHHHHHHHHHHHHHHhhccCCCCCCC
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTP---GLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPP 317 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~---glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~P 317 (462)
|+|||+=.| .. +..|.- +... .||+|-+|+.+=-.- |+ ++. ...|+++. +.++ +.++-
T Consensus 87 PvGvNVLrN--d~--vaA~~I-A~a~--gA~FIRVN~~tg~~~tdqGi--ieg--~A~e~~r~----r~~L----~~~v~ 147 (263)
T COG0434 87 PVGVNVLRN--DA--VAALAI-AYAV--GADFIRVNVLTGAYATDQGI--IEG--NAAELARY----RARL----GSRVK 147 (263)
T ss_pred cceeeeecc--cc--HHHHHH-HHhc--CCCEEEEEeeeceEecccce--ecc--hHHHHHHH----HHhc----cCCcE
Confidence 799999887 11 112211 1112 399999998662210 11 111 12222222 2222 12333
Q ss_pred EEE----EecCCCChhhHHHHHHH-HHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC
Q 012517 318 LLV----KIAPDLSKEDLEDIAAV-AVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR 392 (462)
Q Consensus 318 v~v----Kispdl~~~~~~~ia~~-~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~ 392 (462)
++. |=+--+....+.+.++- ++..++|+||+|....+. +...+.++.+++..
T Consensus 148 vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~----------------------~~d~~el~~a~~~~- 204 (263)
T COG0434 148 VLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGS----------------------PPDLEELKLAKEAV- 204 (263)
T ss_pred EEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCC----------------------CCCHHHHHHHHhcc-
Confidence 333 33333433356666665 677889999999754221 23567788888888
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcC
Q 012517 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGG 430 (462)
Q Consensus 393 ~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~G 430 (462)
+.|++..-|+ +++.+.+.++. ||.+-++|.+-..|
T Consensus 205 -~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 205 -DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred -CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEccCC
Confidence 5898887787 49999999999 99999999997666
No 201
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=97.24 E-value=0.013 Score=56.19 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=85.0
Q ss_pred HHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCC----C--hhhH
Q 012517 258 DYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDL----S--KEDL 331 (462)
Q Consensus 258 dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl----~--~~~~ 331 (462)
.|++.+.+++ ||++.++..+. .+.+.++++.+++ ...++++=+.|.. . .+.+
T Consensus 71 ~~~~~~~~~g--ad~vtvh~e~g----------~~~l~~~i~~~~~----------~g~~~~v~~~~~~~~~~~~~~~~~ 128 (215)
T PRK13813 71 LICEAVFEAG--AWGIIVHGFTG----------RDSLKAVVEAAAE----------SGGKVFVVVEMSHPGALEFIQPHA 128 (215)
T ss_pred HHHHHHHhCC--CCEEEEcCcCC----------HHHHHHHHHHHHh----------cCCeEEEEEeCCCCCCCCCHHHHH
Confidence 4444444444 99999987542 1234555555543 2456655443321 1 2356
Q ss_pred HHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH-HHHH
Q 012517 332 EDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG-EDAY 410 (462)
Q Consensus 332 ~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~-~dA~ 410 (462)
..++....+.|++|.....+ ..+.++++++..+.++.+ ..|||... .++.
T Consensus 129 ~~v~~m~~e~G~~g~~~~~~----------------------------~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~ 179 (215)
T PRK13813 129 DKLAKLAQEAGAFGVVAPAT----------------------------RPERVRYIRSRLGDELKI-ISPGIGAQGGKAA 179 (215)
T ss_pred HHHHHHHHHhCCCeEEECCC----------------------------cchhHHHHHHhcCCCcEE-EeCCcCCCCCCHH
Confidence 77777788899998864321 124456777776533444 78999874 3588
Q ss_pred HHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHH
Q 012517 411 RKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLE 446 (462)
Q Consensus 411 e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~ 446 (462)
+.+++|||.+-++|++ ++.++ +.+..+.+++.|+
T Consensus 180 ~~~~aGad~iV~Gr~I-~~~~d-~~~~~~~l~~~~~ 213 (215)
T PRK13813 180 DAIKAGADYVIVGRSI-YNAAD-PREAAKAINEEIR 213 (215)
T ss_pred HHHHcCCCEEEECccc-CCCCC-HHHHHHHHHHHHh
Confidence 8889999999999997 45566 5555666666553
No 202
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.22 E-value=0.0022 Score=63.03 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++|+...+.|+|.+++..=.. -..| ++...++++++.+.+ +||-..|||+|.+|+
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~----------------a~~g---~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~ 88 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSK----------------AIEN---SVENLPVLEKLSEFA---EHIQIGGGIRSLDYA 88 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCC----------------cccC---CcchHHHHHHHHhhc---CcEEEecCCCCHHHH
Confidence 678899999999999999874321 1112 234678899999887 599999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~ 438 (462)
.+.+.+||+-|-++|..+ ++|++++++.
T Consensus 89 ~~~l~~Ga~rvvigT~a~-~~p~~l~~~~ 116 (241)
T PRK14114 89 EKLRKLGYRRQIVSSKVL-EDPSFLKFLK 116 (241)
T ss_pred HHHHHCCCCEEEECchhh-CCHHHHHHHH
Confidence 999999999999999996 5799998883
No 203
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.21 E-value=0.0045 Score=58.65 Aligned_cols=59 Identities=27% Similarity=0.357 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHH
Q 012517 381 NNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443 (462)
Q Consensus 381 l~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~ 443 (462)
++.++++++..+ ++||++.||| +.+++.+++++||+.|.++|++. +.++ +.+..+.+.+
T Consensus 148 ~~~~~~~~~~~~-~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~-~~~d-~~~~~~~l~~ 206 (212)
T PRK00043 148 LEGLREIRAAVG-DIPIVAIGGI-TPENAPEVLEAGADGVAVVSAIT-GAED-PEAAARALLA 206 (212)
T ss_pred HHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhh-cCCC-HHHHHHHHHH
Confidence 677888888873 4999999999 69999999999999999999985 4455 3333334433
No 204
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.16 E-value=0.00088 Score=64.67 Aligned_cols=67 Identities=27% Similarity=0.346 Sum_probs=50.6
Q ss_pred ccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 367 ETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 367 ~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
|.||-.|.|. ..+.++++.+ ..++|.-|||+|+|+|+++.++|||.+-+++.+ +++|+-+.++.+..
T Consensus 171 Eagsga~~Pv---~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~ii-ee~~~~~~~~v~~~ 237 (240)
T COG1646 171 EAGSGAGDPV---PVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTII-EEDPDKALETVEAI 237 (240)
T ss_pred EecCCCCCCc---CHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECcee-ecCHHHHHHHHHHh
Confidence 5666666654 3445555544 349999999999999999999999999999988 77886555555443
No 205
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.13 E-value=0.0027 Score=62.64 Aligned_cols=82 Identities=17% Similarity=0.094 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHH
Q 012517 332 EDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYR 411 (462)
Q Consensus 332 ~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e 411 (462)
.++|+...+.|++.+++..- |+ + ..+.++++.+.+ ++||...|||++ +++.+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL---------------------g~---~-n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~ 92 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML---------------------GP---N-NDDAAKEALHAY--PGGLQVGGGIND-TNAQE 92 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC---------------------CC---C-cHHHHHHHHHhC--CCCEEEeCCcCH-HHHHH
Confidence 68899999999999998732 11 2 568899999988 699999999998 99999
Q ss_pred HHHhCCCEEEEchhhhhc---CCChHHHHHHHH
Q 012517 412 KIRAGATLVQLYTAFAYG---GPALIPQIKAEL 441 (462)
Q Consensus 412 ~i~aGAd~Vqv~Tali~~---GP~~i~~i~~~L 441 (462)
++.+||+-|.++|.++.+ .|++++++.+..
T Consensus 93 ~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~f 125 (253)
T TIGR02129 93 WLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLV 125 (253)
T ss_pred HHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHh
Confidence 999999999999999753 155666665544
No 206
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.12 E-value=0.0029 Score=61.68 Aligned_cols=89 Identities=25% Similarity=0.183 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHH
Q 012517 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGED 408 (462)
Q Consensus 329 ~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~d 408 (462)
.+..++|+...+.|+|.+++..-... . | .+..++.++++.+.+ .+|+...|||.+.+|
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~-------------~----~---~~~n~~~i~~i~~~~--~~~v~vgGGir~~ed 92 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAI-------------M----G---RGDNDEAIRELAAAW--PLGLWVDGGIRSLEN 92 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCccc-------------c----C---CCccHHHHHHHHHhC--CCCEEEecCcCCHHH
Confidence 37789999999999999998853210 0 1 234678999999988 699999999999999
Q ss_pred HHHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 409 AYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
+.+++.+||+-|-++|..+. . +++.++.+..
T Consensus 93 v~~~l~~Ga~~viigt~~~~-~-~~~~~~~~~~ 123 (233)
T cd04723 93 AQEWLKRGASRVIVGTETLP-S-DDDEDRLAAL 123 (233)
T ss_pred HHHHHHcCCCeEEEcceecc-c-hHHHHHHHhc
Confidence 99999999999999999864 5 7777776655
No 207
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.0039 Score=64.54 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=81.5
Q ss_pred ccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEE
Q 012517 268 QYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLI 347 (462)
Q Consensus 268 ~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIi 347 (462)
...|++++..|-=|. ....++++.|++.. .+..| |..++- ..+-++.+..+|+||+-
T Consensus 262 aGvdvviLDSSqGnS---------~~qiemik~iK~~y--------P~l~V---iaGNVV---T~~qa~nLI~aGaDgLr 318 (503)
T KOG2550|consen 262 AGVDVVILDSSQGNS---------IYQLEMIKYIKETY--------PDLQI---IAGNVV---TKEQAANLIAAGADGLR 318 (503)
T ss_pred cCCcEEEEecCCCcc---------hhHHHHHHHHHhhC--------CCcee---ecccee---eHHHHHHHHHccCceeE
Confidence 359999998764332 34568889998753 23333 444431 23556778889999998
Q ss_pred EecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 348 ISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 348 vsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
+.=..-+.= ...... .. |.| .-.+.-.+.++.... .+|+|+-|||.+.-++.+.+.+|||.||++.-|
T Consensus 319 VGMGsGSiC--iTqevm--a~----Grp-Q~TAVy~va~~A~q~--gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lL 386 (503)
T KOG2550|consen 319 VGMGSGSIC--ITQKVM--AC----GRP-QGTAVYKVAEFANQF--GVPCIADGGIQNVGHVVKALGLGASTVMMGGLL 386 (503)
T ss_pred eccccCcee--eeceee--ec----cCC-cccchhhHHHHHHhc--CCceeecCCcCccchhHhhhhcCchhheeccee
Confidence 763321110 011010 11 111 112445566777777 699999999999999999999999999999866
No 208
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.09 E-value=0.0026 Score=61.90 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
...++++.+.+. +..|++++-. | .|-++|+. ++.+... ++|||++|||.+.+|.
T Consensus 144 ~~~~~~~~~~~~-~~~ii~t~i~--~------------dGt~~G~d----------~l~~~~~-~~pviasGGv~~~~Dl 197 (228)
T PRK04128 144 KVEDAYEMLKNY-VNRFIYTSIE--R------------DGTLTGIE----------EIERFWG-DEEFIYAGGVSSAEDV 197 (228)
T ss_pred CHHHHHHHHHHH-hCEEEEEecc--c------------hhcccCHH----------HHHHhcC-CCCEEEECCCCCHHHH
Confidence 456788888887 8888887542 3 23345533 2223322 6999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhh
Q 012517 410 YRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~ 428 (462)
.+..+.|++.|.++++|..
T Consensus 198 ~~l~~~g~~gvivg~al~~ 216 (228)
T PRK04128 198 KKLAEIGFSGVIIGKALYE 216 (228)
T ss_pred HHHHHCCCCEEEEEhhhhc
Confidence 9999999999999999954
No 209
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.08 E-value=0.16 Score=50.66 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=69.6
Q ss_pred CCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCC--CCCCcCccchHHHHHHHHHhc
Q 012517 314 GPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGG--LSGKPLLSLSNNILKEMYLLT 391 (462)
Q Consensus 314 ~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GG--lSG~~l~~~al~~v~~i~~~~ 391 (462)
.++||++|-....+.+++...++.+...|-.-+++.-. |+ .++.+.....+..+..+++..
T Consensus 133 ~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~r-----------------G~~t~~~Y~~~~vdl~~i~~lk~~~ 195 (266)
T PRK13398 133 TKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCER-----------------GIRTFETYTRNTLDLAAVAVIKELS 195 (266)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEEC-----------------CCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 47899999998888889999999999988866666532 21 223333445678888888887
Q ss_pred CCCccEEE-ecCCCC-----HHHHHHHHHhCCCEEEEchhh
Q 012517 392 RGKIPLIG-CGGISS-----GEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 392 ~~~ipIIg-~GGI~s-----~~dA~e~i~aGAd~Vqv~Tal 426 (462)
.+||+. +.-... ...+...+.+||+.+++=+-+
T Consensus 196 --~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 196 --HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred --CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 589888 555445 788999999999977766544
No 210
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.08 E-value=0.012 Score=56.89 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=87.9
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCC-EEEEecCCCChhhHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPP-LLVKIAPDLSKEDLEDIA 335 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~P-v~vKispdl~~~~~~~ia 335 (462)
+....++.+.+ ....+||-+.+|+. .+.++.+++.. .+.| +.|=.-.=++.+ -+
T Consensus 26 ~a~~~~~al~~~Gi~~iEit~~~~~a------------~~~i~~l~~~~--------~~~p~~~vGaGTV~~~~----~~ 81 (213)
T PRK06552 26 EALKISLAVIKGGIKAIEVTYTNPFA------------SEVIKELVELY--------KDDPEVLIGAGTVLDAV----TA 81 (213)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCccH------------HHHHHHHHHHc--------CCCCCeEEeeeeCCCHH----HH
Confidence 66666776665 38999999988763 24555555431 1112 555554445533 35
Q ss_pred HHHHHcCCcEEEEecCCccC------CCC--CCC---CC--cccccCCCCCCcCcc---chHHHHHHHHHhcCCCccEEE
Q 012517 336 AVAVALRLDGLIISNTTISR------PDP--VSK---NP--VAKETGGLSGKPLLS---LSNNILKEMYLLTRGKIPLIG 399 (462)
Q Consensus 336 ~~~~~~GvdgIivsNTt~~r------~~~--~~~---~~--~~~~~GGlSG~~l~~---~al~~v~~i~~~~~~~ipIIg 399 (462)
+.+.++|++.++--+....- .+. ++. +. ..-..-|.+--.++| ...+.++.++..++ ++|++.
T Consensus 82 ~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p-~ip~~a 160 (213)
T PRK06552 82 RLAILAGAQFIVSPSFNRETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPLP-QVNVMV 160 (213)
T ss_pred HHHHHcCCCEEECCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhhhCC-CCEEEE
Confidence 77788898887643332110 000 000 00 000011111111222 23577888888886 699999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 400 CGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 400 ~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
+|||+ .+.+.+++++||+.|.+++.++
T Consensus 161 tGGI~-~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 161 TGGVN-LDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred ECCCC-HHHHHHHHHCCCcEEEEchHHh
Confidence 99998 8999999999999999999995
No 211
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.08 E-value=0.0054 Score=58.62 Aligned_cols=137 Identities=20% Similarity=0.320 Sum_probs=92.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV 320 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v 320 (462)
++=|.+.-. +|+ +|++....++ +|++.+++-+ .+.+.++++.+++. ..-..+
T Consensus 59 ~~DvHLMv~--~P~---~~i~~~~~~g--~~~i~~H~E~-----------~~~~~~~i~~ik~~----------g~k~Gi 110 (201)
T PF00834_consen 59 PLDVHLMVE--NPE---RYIEEFAEAG--ADYITFHAEA-----------TEDPKETIKYIKEA----------GIKAGI 110 (201)
T ss_dssp EEEEEEESS--SGG---GHHHHHHHHT---SEEEEEGGG-----------TTTHHHHHHHHHHT----------TSEEEE
T ss_pred cEEEEeeec--cHH---HHHHHHHhcC--CCEEEEcccc-----------hhCHHHHHHHHHHh----------CCCEEE
Confidence 566777653 465 6777666666 8999998742 23456778888763 466677
Q ss_pred EecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC---CCccE
Q 012517 321 KIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR---GKIPL 397 (462)
Q Consensus 321 Kispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~---~~ipI 397 (462)
=|.|..+.+.+..+.+ -+|.|.+-.. +. |.+|.+..+.+++-|+++++..+ .++.|
T Consensus 111 alnP~T~~~~~~~~l~-----~vD~VlvMsV---------------~P-G~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I 169 (201)
T PF00834_consen 111 ALNPETPVEELEPYLD-----QVDMVLVMSV---------------EP-GFGGQKFIPEVLEKIRELRKLIPENGLDFEI 169 (201)
T ss_dssp EE-TTS-GGGGTTTGC-----CSSEEEEESS----------------T-TTSSB--HGGHHHHHHHHHHHHHHHTCGSEE
T ss_pred EEECCCCchHHHHHhh-----hcCEEEEEEe---------------cC-CCCcccccHHHHHHHHHHHHHHHhcCCceEE
Confidence 7888766555544332 3888765421 12 56788888888888888887753 25899
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 398 IGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 398 Ig~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
..-|||+ .+.+.++.++|||.+-++|++.
T Consensus 170 ~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 170 EVDGGIN-EENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp EEESSES-TTTHHHHHHHT--EEEESHHHH
T ss_pred EEECCCC-HHHHHHHHHcCCCEEEECHHHh
Confidence 9999997 5688999999999999999875
No 212
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.06 E-value=0.038 Score=53.01 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=83.6
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
+....++.+.+ ..+.+||.+.+|+. .+.++.+++.. .+ +.|=.-.=++.++ ++
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~~t~~a------------~~~i~~l~~~~--------~~--~~vGAGTVl~~~~----a~ 74 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTLRTPVA------------LDAIRLLRKEV--------PD--ALIGAGTVLNPEQ----LR 74 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccH------------HHHHHHHHHHC--------CC--CEEEEEeCCCHHH----HH
Confidence 56666666665 39999999987763 35555665431 12 4444433345333 67
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+.++|++.++--+. ..++++..++. ++|.+- |+.|+.++.+.+++|
T Consensus 75 ~a~~aGA~FivsP~~----------------------------~~~v~~~~~~~---~i~~iP--G~~TptEi~~A~~~G 121 (204)
T TIGR01182 75 QAVDAGAQFIVSPGL----------------------------TPELAKHAQDH---GIPIIP--GVATPSEIMLALELG 121 (204)
T ss_pred HHHHcCCCEEECCCC----------------------------CHHHHHHHHHc---CCcEEC--CCCCHHHHHHHHHCC
Confidence 788899998852211 12444444433 566666 999999999999999
Q ss_pred CCEEEEchhhhhcCCChHHHHH
Q 012517 417 ATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 417 Ad~Vqv~Tali~~GP~~i~~i~ 438 (462)
|++|-++=+-...||.+++.++
T Consensus 122 a~~vKlFPA~~~GG~~yikal~ 143 (204)
T TIGR01182 122 ITALKLFPAEVSGGVKMLKALA 143 (204)
T ss_pred CCEEEECCchhcCCHHHHHHHh
Confidence 9999999988776799999887
No 213
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.05 E-value=0.0038 Score=61.91 Aligned_cols=85 Identities=18% Similarity=0.099 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++|+...+.|++.+++..- +| | .+...++++++++ + .+||-..|||++ +++
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDL-----------------dg--g---~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i 97 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIML-----------------GA--D---DASLAAALEALRA-Y--PGGLQVGGGVNS-ENA 97 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEEC-----------------CC--C---CcccHHHHHHHHh-C--CCCEEEeCCccH-HHH
Confidence 6789999999999999998732 11 2 2235788999998 7 599999999997 999
Q ss_pred HHHHHhCCCEEEEchhhhhcC----CChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGG----PALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~G----P~~i~~i~~~L 441 (462)
.+++.+||+=|.++|..+. + |++++++.+..
T Consensus 98 ~~~l~~Ga~rViigT~Av~-~~~~~p~~v~~~~~~~ 132 (262)
T PLN02446 98 MSYLDAGASHVIVTSYVFR-DGQIDLERLKDLVRLV 132 (262)
T ss_pred HHHHHcCCCEEEEchHHHh-CCCCCHHHHHHHHHHh
Confidence 9999999999999999975 5 88888776654
No 214
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.04 E-value=0.0063 Score=59.28 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=73.8
Q ss_pred ccCcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChh---------hHHHHHH
Q 012517 268 QYADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKE---------DLEDIAA 336 (462)
Q Consensus 268 ~~aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~---------~~~~ia~ 336 (462)
..||.+.+ |+.. -...+.+...+.+..|++++++ ...|+++= +.+..+ .+...++
T Consensus 88 ~GAd~vd~vi~~~~------~~~~~~~~~~~~i~~v~~~~~~------~gl~vIlE--~~l~~~~~~~~~~~~~I~~a~r 153 (236)
T PF01791_consen 88 LGADEVDVVINYGA------LGSGNEDEVIEEIAAVVEECHK------YGLKVILE--PYLRGEEVADEKKPDLIARAAR 153 (236)
T ss_dssp TT-SEEEEEEEHHH------HHTTHHHHHHHHHHHHHHHHHT------SEEEEEEE--ECECHHHBSSTTHHHHHHHHHH
T ss_pred cCCceeeeeccccc------cccccHHHHHHHHHHHHHHHhc------CCcEEEEE--EecCchhhcccccHHHHHHHHH
Confidence 45898775 5411 0011224555666667666642 35777776 333332 3788899
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCcc----EEEecCC------CCH
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIP----LIGCGGI------SSG 406 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ip----IIg~GGI------~s~ 406 (462)
.+.+.|+|.|-.+-+.. .|. .....+.++++.+.. .+| |..+||| .+.
T Consensus 154 ia~e~GaD~vKt~tg~~------------------~~~--t~~~~~~~~~~~~~~--~~p~~~~Vk~sGGi~~~~~~~~l 211 (236)
T PF01791_consen 154 IAAELGADFVKTSTGKP------------------VGA--TPEDVELMRKAVEAA--PVPGKVGVKASGGIDAEDFLRTL 211 (236)
T ss_dssp HHHHTT-SEEEEE-SSS------------------SCS--HHHHHHHHHHHHHTH--SSTTTSEEEEESSSSHHHHHHSH
T ss_pred HHHHhCCCEEEecCCcc------------------ccc--cHHHHHHHHHHHHhc--CCCcceEEEEeCCCChHHHHHHH
Confidence 99999999987553210 010 122344455555544 356 9999999 999
Q ss_pred HHHHHHHHhCCCE--EEEchhh
Q 012517 407 EDAYRKIRAGATL--VQLYTAF 426 (462)
Q Consensus 407 ~dA~e~i~aGAd~--Vqv~Tal 426 (462)
++|.+++++||+. +..++.+
T Consensus 212 ~~a~~~i~aGa~~~G~~~Gr~i 233 (236)
T PF01791_consen 212 EDALEFIEAGADRIGTSSGRNI 233 (236)
T ss_dssp HHHHHHHHTTHSEEEEEEHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHH
Confidence 9999999999954 4444444
No 215
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.96 E-value=0.0058 Score=59.68 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++|+...+.|++.+++..=.-. . | .+...+.++++.+... .|+-.-|||+|.+|+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a------------~-----~---~~~n~~~i~~i~~~~~--~~v~vGGGIrs~e~~ 88 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA------------E-----G---VGNNEMYIKEISKIGF--DWIQVGGGIRDIEKA 88 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc------------C-----C---CcchHHHHHHHHhhCC--CCEEEeCCcCCHHHH
Confidence 5788999999999999998743210 0 1 1235688899988542 499999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+++.+||+-|-++|..+. +|++++++.+..
T Consensus 89 ~~~l~~Ga~kvvigt~a~~-~p~~~~~~~~~~ 119 (232)
T PRK13586 89 KRLLSLDVNALVFSTIVFT-NFNLFHDIVREI 119 (232)
T ss_pred HHHHHCCCCEEEECchhhC-CHHHHHHHHHHh
Confidence 9999999999999999964 799998887665
No 216
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.94 E-value=0.039 Score=57.91 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=81.7
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE-EecCCCChhhHHHHHHHHHHcCCcEEE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV-KIAPDLSKEDLEDIAAVAVALRLDGLI 347 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v-Kispdl~~~~~~~ia~~~~~~GvdgIi 347 (462)
.+|++.++..++. +.+.+.++.+++. ..-+.+ =+.|+- ..+.++.+ ..++|.|.
T Consensus 250 GAD~vTVH~ea~~----------~ti~~ai~~akk~----------GikvgVD~lnp~t----p~e~i~~l-~~~vD~Vl 304 (391)
T PRK13307 250 TADAVVISGLAPI----------STIEKAIHEAQKT----------GIYSILDMLNVED----PVKLLESL-KVKPDVVE 304 (391)
T ss_pred CCCEEEEeccCCH----------HHHHHHHHHHHHc----------CCEEEEEEcCCCC----HHHHHHHh-hCCCCEEE
Confidence 3999999986532 2344555555432 455556 455542 23344444 56899987
Q ss_pred EecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 348 ISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 348 vsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
+.-.. + .|+. +..++.++++++.. .+++|...|||+ .+++.+++++|||.+-++|++
T Consensus 305 lht~v----d----------p~~~------~~~~~kI~~ikk~~-~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaI- 361 (391)
T PRK13307 305 LHRGI----D----------EEGT------EHAWGNIKEIKKAG-GKILVAVAGGVR-VENVEEALKAGADILVVGRAI- 361 (391)
T ss_pred Ecccc----C----------CCcc------cchHHHHHHHHHhC-CCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHH-
Confidence 76221 0 1110 11446777888763 478999999999 999999999999999999997
Q ss_pred hcCCChHHHHHHHHHHHH
Q 012517 428 YGGPALIPQIKAELAECL 445 (462)
Q Consensus 428 ~~GP~~i~~i~~~L~~~l 445 (462)
++-++ +.+..+++.+.|
T Consensus 362 f~a~D-p~~aak~l~~~i 378 (391)
T PRK13307 362 TKSKD-VRRAAEDFLNKL 378 (391)
T ss_pred hCCCC-HHHHHHHHHHhh
Confidence 44455 444455555555
No 217
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=96.92 E-value=0.083 Score=52.22 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=98.6
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHc-ccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLS-QYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~-~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
++..+++.. +++ ++.+.++++. ..+..+-+++.. +.+.-.+.+++|+++. +.+.++.
T Consensus 76 ~~~~~~~~~--~~~---~~~~~~~~~~~~G~~~~KiKvg~----------~~~~d~~~v~~vr~~~-------g~~~~l~ 133 (265)
T cd03315 76 RVAHMLGLG--EPA---EVAEEARRALEAGFRTFKLKVGR----------DPARDVAVVAALREAV-------GDDAELR 133 (265)
T ss_pred EEEEEecCC--CHH---HHHHHHHHHHHCCCCEEEEecCC----------CHHHHHHHHHHHHHhc-------CCCCEEE
Confidence 455566542 444 4444444443 347888888741 1133346777777654 3467888
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE
Q 012517 320 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG 399 (462)
Q Consensus 320 vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg 399 (462)
+.....++.++..++++.+.+.+++.|-- |+.+...+..+++++.+ .+||++
T Consensus 134 vDan~~~~~~~a~~~~~~l~~~~i~~iEe--------------------------P~~~~d~~~~~~l~~~~--~ipia~ 185 (265)
T cd03315 134 VDANRGWTPKQAIRALRALEDLGLDYVEQ--------------------------PLPADDLEGRAALARAT--DTPIMA 185 (265)
T ss_pred EeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------------------------CCCcccHHHHHHHHhhC--CCCEEE
Confidence 88777788889999999999988877621 11122456778899888 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHH
Q 012517 400 CGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQI 437 (462)
Q Consensus 400 ~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i 437 (462)
.+.+.+.+|+.++++.+ +|.||+=-... .|..=..++
T Consensus 186 dE~~~~~~~~~~~i~~~~~d~v~~k~~~~-GGi~~~~~~ 223 (265)
T cd03315 186 DESAFTPHDAFRELALGAADAVNIKTAKT-GGLTKAQRV 223 (265)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEEecccc-cCHHHHHHH
Confidence 99999999999999876 89999876553 344333333
No 218
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=96.89 E-value=0.018 Score=56.99 Aligned_cols=122 Identities=24% Similarity=0.271 Sum_probs=79.8
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLII 348 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIiv 348 (462)
.||++-+.++. -+.+.+.++++...+ + ..-.+|=+. +.+| ++.+.+.|++-|-+
T Consensus 131 GADaVLLI~~~---------L~~~~l~~l~~~a~~----l------Gle~lVEVh---~~~E----l~~al~~~a~iiGI 184 (254)
T PF00218_consen 131 GADAVLLIAAI---------LSDDQLEELLELAHS----L------GLEALVEVH---NEEE----LERALEAGADIIGI 184 (254)
T ss_dssp T-SEEEEEGGG---------SGHHHHHHHHHHHHH----T------T-EEEEEES---SHHH----HHHHHHTT-SEEEE
T ss_pred CCCEeehhHHh---------CCHHHHHHHHHHHHH----c------CCCeEEEEC---CHHH----HHHHHHcCCCEEEE
Confidence 39999988753 223445666655443 2 456666663 2223 34556789987766
Q ss_pred ecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 349 SNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 349 sNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
-|+...- +...++...+++..++.++.+|+-+||.+++|+..+..+|+|.|-||++||.
T Consensus 185 NnRdL~t---------------------f~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 185 NNRDLKT---------------------FEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp ESBCTTT---------------------CCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHT
T ss_pred eCccccC---------------------cccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 6653211 1234566678888887789999999999999999999999999999999986
Q ss_pred cCCChHHHHH
Q 012517 429 GGPALIPQIK 438 (462)
Q Consensus 429 ~GP~~i~~i~ 438 (462)
.++.-..++
T Consensus 244 -~~d~~~~~~ 252 (254)
T PF00218_consen 244 -SPDPGEALR 252 (254)
T ss_dssp -SSSHHHHHH
T ss_pred -CCCHHHHHh
Confidence 577555443
No 219
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.82 E-value=0.068 Score=51.69 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHH
Q 012517 381 NNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443 (462)
Q Consensus 381 l~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~ 443 (462)
.+.++.+++... ++||+.-|||.+++++.++++.|||.|.++|+++. -++ +.++.+++.+
T Consensus 161 ~~~~~~ir~~~~-~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~-~~~-~~~~~~~~~~ 220 (223)
T PRK04302 161 EDAVEAVKKVNP-DVKVLCGAGISTGEDVKAALELGADGVLLASGVVK-AKD-PEAALRDLVS 220 (223)
T ss_pred HHHHHHHHhccC-CCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhC-CcC-HHHHHHHHHh
Confidence 355566666543 69999999999999999999999999999999984 344 4444444443
No 220
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.79 E-value=0.0076 Score=57.60 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=62.8
Q ss_pred CEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCcc
Q 012517 317 PLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIP 396 (462)
Q Consensus 317 Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ip 396 (462)
|++.=++. .+.++..++++++.+.|+..|-++.++. .+++.++++++..+ + -
T Consensus 5 ~vv~Vir~-~~~~~a~~ia~al~~gGi~~iEit~~tp-------------------------~a~~~I~~l~~~~~-~-~ 56 (201)
T PRK06015 5 PVIPVLLI-DDVEHAVPLARALAAGGLPAIEITLRTP-------------------------AALDAIRAVAAEVE-E-A 56 (201)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCc-------------------------cHHHHHHHHHHHCC-C-C
Confidence 44444443 3556899999999999999999987752 26788999998875 3 6
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEE
Q 012517 397 LIGCGGISSGEDAYRKIRAGATLVQ 421 (462)
Q Consensus 397 IIg~GGI~s~~dA~e~i~aGAd~Vq 421 (462)
+||.|-|.|.+++.+.+++||+++.
T Consensus 57 ~vGAGTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 57 IVGAGTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred EEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 8999999999999999999999873
No 221
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.78 E-value=0.39 Score=48.44 Aligned_cols=166 Identities=11% Similarity=0.060 Sum_probs=90.7
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcc-cCcEEEEe-ccCCCCCC----c--ccccCchHHHHHHHHHHHHHHhhccCC
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQ-YADYLVIN-VSSPNTPG----L--RMLQGRKQLKDLVKKVQAARDEMQWGE 312 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~-~aD~leiN-vSsPnt~g----l--r~lq~~~~l~~ll~aV~~~~~~~~~~~ 312 (462)
||.+.+-.- -++. ...+.++++.+ .+..|.|- -..|.-+| . ..+-..+...+.++++++++ .
T Consensus 80 Pv~~D~d~G-g~~~---~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~------~ 149 (285)
T TIGR02320 80 PIILDGDTG-GNFE---HFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQ------T 149 (285)
T ss_pred CEEEecCCC-CCHH---HHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhc------c
Confidence 677776322 3555 44444444443 26666661 11233222 1 12223344445555555442 1
Q ss_pred CCCCCEEEEecC---CCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHH
Q 012517 313 EGPPPLLVKIAP---DLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYL 389 (462)
Q Consensus 313 ~~~~Pv~vKisp---dl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~ 389 (462)
+.+++|+.+.-. ....++..+-++...++|+|+|.+.... .+.+.++++.+
T Consensus 150 ~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~--------------------------~~~~ei~~~~~ 203 (285)
T TIGR02320 150 TEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK--------------------------KDPDEILEFAR 203 (285)
T ss_pred CCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC--------------------------CCHHHHHHHHH
Confidence 346788888321 1234677788999999999999875110 12344555555
Q ss_pred hcCC---CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHH
Q 012517 390 LTRG---KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECL 445 (462)
Q Consensus 390 ~~~~---~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l 445 (462)
.++. ++|++.+.+-.-.-.+.++-++|.+.|-.+..++. ...+.+.+-+.+++
T Consensus 204 ~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~---aa~~a~~~~~~~~~ 259 (285)
T TIGR02320 204 RFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLR---AAYAAMQQVAERIL 259 (285)
T ss_pred HhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHH---HHHHHHHHHHHHHH
Confidence 5532 57887765422223567788899999988877754 23444444444443
No 222
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.69 E-value=0.012 Score=57.85 Aligned_cols=89 Identities=16% Similarity=0.013 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..+.++...+.|+..+++.--... + | .+...++++++.+.+ .+|+-..|||+|.+|+
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a------------~-----g---~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~ 89 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAA------------F-----G---GGNNEMMLEEVVKLL--VVVEELSGGRRDDSSL 89 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCC------------C-----C---CcchHHHHHHHHHHC--CCCEEEcCCCCCHHHH
Confidence 4456777778889998887632100 0 1 123578999999988 5999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
.+.+.+||+-|.++|..+ +.|.++.++.+..
T Consensus 90 ~~~l~~Ga~~vvigT~a~-~~p~~~~~~~~~~ 120 (243)
T TIGR01919 90 RAALTGGRARVNGGTAAL-ENPWWAAAVIRYG 120 (243)
T ss_pred HHHHHcCCCEEEECchhh-CCHHHHHHHHHHc
Confidence 999999999999999986 5799998886653
No 223
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.69 E-value=0.0078 Score=58.40 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=68.9
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc--cEEEecCCC
Q 012517 327 SKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI--PLIGCGGIS 404 (462)
Q Consensus 327 ~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i--pIIg~GGI~ 404 (462)
+.++..++++++.+.|+..|-++.++. .+++.++++++..+.+. -+||+|-|.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp-------------------------~a~~~i~~l~~~~~~~~p~~~vGaGTVl 79 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGD-------------------------FAHEVFAELVKYAAKELPGMILGVGSIV 79 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC-------------------------cHHHHHHHHHHHHHhhCCCeEEeeEeCc
Confidence 566899999999999999999997752 15677777765432222 389999999
Q ss_pred CHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHH--HHHHcCCCCHHHhh
Q 012517 405 SGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE--CLERDGFKSIIEAV 457 (462)
Q Consensus 405 s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~--~l~~~G~~si~e~~ 457 (462)
|.+++.+.+++||+.+. -|.+-.++.+...+ .+---|.-|.+|+.
T Consensus 80 ~~e~a~~a~~aGA~FiV--------sP~~~~~v~~~~~~~~i~~iPG~~TpsEi~ 126 (222)
T PRK07114 80 DAATAALYIQLGANFIV--------TPLFNPDIAKVCNRRKVPYSPGCGSLSEIG 126 (222)
T ss_pred CHHHHHHHHHcCCCEEE--------CCCCCHHHHHHHHHcCCCEeCCCCCHHHHH
Confidence 99999999999999873 25444444333222 23334566666654
No 224
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.68 E-value=0.011 Score=56.58 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=62.5
Q ss_pred CEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCcc
Q 012517 317 PLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIP 396 (462)
Q Consensus 317 Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ip 396 (462)
||+.=++. .+.++..++++++.+.|+..|-++.++. .+++.++++++..+ + -
T Consensus 9 ~liaVlr~-~~~e~a~~~~~al~~~Gi~~iEit~~t~-------------------------~a~~~i~~l~~~~~-~-~ 60 (204)
T TIGR01182 9 KIVPVIRI-DDVDDALPLAKALIEGGLRVLEVTLRTP-------------------------VALDAIRLLRKEVP-D-A 60 (204)
T ss_pred CEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEeCCCc-------------------------cHHHHHHHHHHHCC-C-C
Confidence 44444443 3556899999999999999999987651 26788999998875 3 6
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEE
Q 012517 397 LIGCGGISSGEDAYRKIRAGATLV 420 (462)
Q Consensus 397 IIg~GGI~s~~dA~e~i~aGAd~V 420 (462)
+||.|-|.|.+++.+.+++||+++
T Consensus 61 ~vGAGTVl~~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 61 LIGAGTVLNPEQLRQAVDAGAQFI 84 (204)
T ss_pred EEEEEeCCCHHHHHHHHHcCCCEE
Confidence 899999999999999999999998
No 225
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.68 E-value=0.034 Score=53.96 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCC-EEEEecCCCChh
Q 012517 252 SEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPP-LLVKIAPDLSKE 329 (462)
Q Consensus 252 t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~P-v~vKispdl~~~ 329 (462)
+++ +....++.+.+ ....+||-+.+|+.. +.++.+++... .+.| +.|=...=++.+
T Consensus 25 ~~~---~a~~~~~al~~gGi~~iEiT~~tp~a~------------~~i~~l~~~~~-------~~~p~~~vGaGTVl~~e 82 (222)
T PRK07114 25 DVE---VAKKVIKACYDGGARVFEFTNRGDFAH------------EVFAELVKYAA-------KELPGMILGVGSIVDAA 82 (222)
T ss_pred CHH---HHHHHHHHHHHCCCCEEEEeCCCCcHH------------HHHHHHHHHHH-------hhCCCeEEeeEeCcCHH
Confidence 455 55555555555 389999999887642 34444443321 1223 555554445533
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccC------CCC--CCC---C--CcccccCCCCCCcCccc---hHHHHHHHHHhcCC
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISR------PDP--VSK---N--PVAKETGGLSGKPLLSL---SNNILKEMYLLTRG 393 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r------~~~--~~~---~--~~~~~~GGlSG~~l~~~---al~~v~~i~~~~~~ 393 (462)
+ ++.+.++|++.++--+....- .+. ++. + ...-..-|.+---++|- -...++.++.-++
T Consensus 83 ~----a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p- 157 (222)
T PRK07114 83 T----AALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPMP- 157 (222)
T ss_pred H----HHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccCC-
Confidence 3 577888999988755543220 000 010 0 00001112222223332 2466777777776
Q ss_pred CccEEEecCCCC-HHHHHHHHHhCCCEEEEchhhh
Q 012517 394 KIPLIGCGGISS-GEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 394 ~ipIIg~GGI~s-~~dA~e~i~aGAd~Vqv~Tali 427 (462)
+++++.+|||+- .+++.+++++|+..|.++|.++
T Consensus 158 ~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 158 WTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred CCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 799999999995 6999999999999999999995
No 226
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.63 E-value=0.011 Score=56.35 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=57.8
Q ss_pred CEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCcc
Q 012517 317 PLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIP 396 (462)
Q Consensus 317 Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ip 396 (462)
+++.=++. .+.++..++++++.+.|+..|-++.++. .+++.++++++..+ + -
T Consensus 9 ~iiaVir~-~~~~~a~~~~~al~~gGi~~iEiT~~t~-------------------------~a~~~I~~l~~~~p-~-~ 60 (196)
T PF01081_consen 9 KIIAVIRG-DDPEDAVPIAEALIEGGIRAIEITLRTP-------------------------NALEAIEALRKEFP-D-L 60 (196)
T ss_dssp SEEEEETT-SSGGGHHHHHHHHHHTT--EEEEETTST-------------------------THHHHHHHHHHHHT-T-S
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEecCCc-------------------------cHHHHHHHHHHHCC-C-C
Confidence 44444443 3456899999999999999999987651 26788999999886 4 5
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEE
Q 012517 397 LIGCGGISSGEDAYRKIRAGATLVQ 421 (462)
Q Consensus 397 IIg~GGI~s~~dA~e~i~aGAd~Vq 421 (462)
+||.|.|.|.+++.+++++||+.+.
T Consensus 61 ~vGAGTV~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 61 LVGAGTVLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp EEEEES--SHHHHHHHHHHT-SEEE
T ss_pred eeEEEeccCHHHHHHHHHcCCCEEE
Confidence 8999999999999999999999873
No 227
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.52 E-value=0.026 Score=58.29 Aligned_cols=102 Identities=24% Similarity=0.219 Sum_probs=66.4
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE
Q 012517 319 LVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 319 ~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII 398 (462)
+|-.|.. ...+ +..+.+.|+|.|.++--..... + + + . .+..++.++.+.+.+ .+|++
T Consensus 242 iIG~S~H----s~~e-~~~A~~~GaDYI~lGPvf~T~t----K-p-----~-~-----~~~Gle~l~~~~~~~--~iPv~ 298 (347)
T PRK02615 242 IIGRSTT----NPEE-MAKAIAEGADYIGVGPVFPTPT----K-P-----G-K-----APAGLEYLKYAAKEA--PIPWF 298 (347)
T ss_pred EEEEecC----CHHH-HHHHHHcCCCEEEECCCcCCCC----C-C-----C-C-----CCCCHHHHHHHHHhC--CCCEE
Confidence 4555543 2333 3555678999998863221110 0 0 0 0 123467788888877 69999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHH
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLE 446 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~ 446 (462)
+.|||+ .+++.+.+.+||+.|.+.++++. .++ +....+.+.+.|.
T Consensus 299 AiGGI~-~~ni~~l~~~Ga~gVAvisaI~~-a~d-p~~~~~~l~~~l~ 343 (347)
T PRK02615 299 AIGGID-KSNIPEVLQAGAKRVAVVRAIMG-AED-PKQATQELLKQLS 343 (347)
T ss_pred EECCCC-HHHHHHHHHcCCcEEEEeHHHhC-CCC-HHHHHHHHHHHHh
Confidence 999996 99999999999999999999964 344 3333334444443
No 228
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.48 E-value=0.023 Score=58.73 Aligned_cols=106 Identities=23% Similarity=0.239 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCC
Q 012517 292 KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGL 371 (462)
Q Consensus 292 ~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGl 371 (462)
+...+.++.|++.......+...+..+.+=+++.. +-.+.++.+.++|+|.|++--.. |.
T Consensus 73 e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~---~~~er~~~L~~agvD~ivID~a~-----------------g~ 132 (352)
T PF00478_consen 73 EEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD---DDFERAEALVEAGVDVIVIDSAH-----------------GH 132 (352)
T ss_dssp HHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESST---CHHHHHHHHHHTT-SEEEEE-SS-----------------TT
T ss_pred HHHHHHHhhhccccccccccccccceEEEEecCCH---HHHHHHHHHHHcCCCEEEccccC-----------------cc
Confidence 34455566665432111111223445555555543 33667788888999999874221 11
Q ss_pred CCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 012517 372 SGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 372 SG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~T 424 (462)
| ....+.++++++..+ ++||| .|.|-|++.+.+++++|||.|-++-
T Consensus 133 s-----~~~~~~ik~ik~~~~-~~~vi-aGNV~T~e~a~~L~~aGad~vkVGi 178 (352)
T PF00478_consen 133 S-----EHVIDMIKKIKKKFP-DVPVI-AGNVVTYEGAKDLIDAGADAVKVGI 178 (352)
T ss_dssp S-----HHHHHHHHHHHHHST-TSEEE-EEEE-SHHHHHHHHHTT-SEEEESS
T ss_pred H-----HHHHHHHHHHHHhCC-CceEE-ecccCCHHHHHHHHHcCCCEEEEec
Confidence 1 234678899999987 78888 7889999999999999999999874
No 229
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.39 E-value=0.025 Score=54.23 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=67.9
Q ss_pred CCCEEEEe---cCCC----ChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHH
Q 012517 315 PPPLLVKI---APDL----SKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEM 387 (462)
Q Consensus 315 ~~Pv~vKi---spdl----~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i 387 (462)
+.||+.=+ ||+. +.++..++|+...+.|+++|.+..-. . ..+| ..+.++.+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~-~------------~~~g---------~~~~~~~i 67 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEP-K------------YFQG---------SLEDLRAV 67 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCc-c------------ccCC---------CHHHHHHH
Confidence 46777744 4442 33578999999999999999765211 0 0111 34778888
Q ss_pred HHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 388 YLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 388 ~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
++.+ ++||+.-|+|.+.+++.+.+++|||.|.+.+..+
T Consensus 68 ~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 68 REAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 8887 7999999999999999999999999999988763
No 230
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.37 E-value=0.016 Score=54.74 Aligned_cols=66 Identities=27% Similarity=0.306 Sum_probs=51.8
Q ss_pred HHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHh
Q 012517 336 AVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRA 415 (462)
Q Consensus 336 ~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~a 415 (462)
..+.+.|+|.|-+.-| . ..+| .+.++.+++.++ ++|+++.||| +.+++.+++++
T Consensus 119 ~~A~~~Gadyv~~Fpt---~-----------~~~G----------~~~l~~~~~~~~-~ipvvaiGGI-~~~n~~~~l~a 172 (187)
T PRK07455 119 VTAWQAGASCVKVFPV---Q-----------AVGG----------ADYIKSLQGPLG-HIPLIPTGGV-TLENAQAFIQA 172 (187)
T ss_pred HHHHHCCCCEEEECcC---C-----------cccC----------HHHHHHHHhhCC-CCcEEEeCCC-CHHHHHHHHHC
Confidence 4456689999976211 0 1223 467888888875 6999999999 58999999999
Q ss_pred CCCEEEEchhhh
Q 012517 416 GATLVQLYTAFA 427 (462)
Q Consensus 416 GAd~Vqv~Tali 427 (462)
||+.|.++|+++
T Consensus 173 Ga~~vav~s~i~ 184 (187)
T PRK07455 173 GAIAVGLSGQLF 184 (187)
T ss_pred CCeEEEEehhcc
Confidence 999999999985
No 231
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=96.36 E-value=0.018 Score=56.89 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=56.7
Q ss_pred hHH-HHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHH
Q 012517 330 DLE-DIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGED 408 (462)
Q Consensus 330 ~~~-~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~d 408 (462)
++. ++++.+.+. +..|++++-. |+ |-++|+ .+++++++.+.+ ++|||++|||.|.+|
T Consensus 158 ~~~~e~~~~~~~~-~~~il~TdI~--rD------------Gtl~G~-----dlel~~~l~~~~--~ipVIASGGv~s~eD 215 (253)
T TIGR02129 158 ELNAETLEELSKY-CDEFLIHAAD--VE------------GLCKGI-----DEELVSKLGEWS--PIPITYAGGAKSIDD 215 (253)
T ss_pred ChHHHHHHHHHhh-CCEEEEeeec--cc------------CccccC-----CHHHHHHHHhhC--CCCEEEECCCCCHHH
Confidence 455 888888888 9999987643 32 334554 578889999987 799999999999999
Q ss_pred HHHHHHh--C-CCEEEEchhhh
Q 012517 409 AYRKIRA--G-ATLVQLYTAFA 427 (462)
Q Consensus 409 A~e~i~a--G-Ad~Vqv~Tali 427 (462)
..+.-.. | ++ +-++.++.
T Consensus 216 i~~l~~~~~g~~~-aIvG~Alf 236 (253)
T TIGR02129 216 LDLVDELSKGKVD-LTIGSALD 236 (253)
T ss_pred HHHHHHhcCCCCc-EEeeehHH
Confidence 9988443 4 55 66777663
No 232
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.36 E-value=0.065 Score=57.41 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=93.4
Q ss_pred CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEe
Q 012517 270 ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIIS 349 (462)
Q Consensus 270 aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivs 349 (462)
||++-+-++. .+.+.|.++++...+. ..-.+|=+- +.+| ++.+.+.|++-|=+-
T Consensus 133 ADavLLI~~~---------L~~~~l~~l~~~a~~l----------Gl~~lvEvh---~~~E----l~~al~~~a~iiGiN 186 (454)
T PRK09427 133 ADAILLMLSV---------LDDEQYRQLAAVAHSL----------NMGVLTEVS---NEEE----LERAIALGAKVIGIN 186 (454)
T ss_pred CCchhHHHHh---------CCHHHHHHHHHHHHHc----------CCcEEEEEC---CHHH----HHHHHhCCCCEEEEe
Confidence 8887765532 2234566666655432 445555552 2223 344566788865555
Q ss_pred cCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhc
Q 012517 350 NTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYG 429 (462)
Q Consensus 350 NTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~ 429 (462)
|+.+.- +...++...++...+++++.+|+-+||.|++|+..+ +.|||+|-|++++|.
T Consensus 187 nRdL~t---------------------~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~- 243 (454)
T PRK09427 187 NRNLRD---------------------LSIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMA- 243 (454)
T ss_pred CCCCcc---------------------ceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcC-
Confidence 543211 223556677888888888999999999999999886 568999999999986
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCHHHhh
Q 012517 430 GPALIPQIKAELAECLERDGFKSIIEAV 457 (462)
Q Consensus 430 GP~~i~~i~~~L~~~l~~~G~~si~e~~ 457 (462)
.++....+++-+....+-.|.++.+|+.
T Consensus 244 ~~d~~~~~~~L~~~~vKICGit~~eda~ 271 (454)
T PRK09427 244 EDDLELAVRKLILGENKVCGLTRPQDAK 271 (454)
T ss_pred CCCHHHHHHHHhccccccCCCCCHHHHH
Confidence 5776666655555556678999988875
No 233
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.00061 Score=68.91 Aligned_cols=86 Identities=23% Similarity=0.318 Sum_probs=69.1
Q ss_pred ccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHH
Q 012517 367 ETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLE 446 (462)
Q Consensus 367 ~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~ 446 (462)
.+||+||.+++|.+++.|-.+.+++. +.||.+.|+|.+++.-++.+..||++.|+++++.-+. ..+-+.-++++.++.
T Consensus 20 ~~g~~~~tai~p~~l~~v~s~a~~~s-~~~i~A~gdi~saeS~l~~~~~G~s~l~v~saiqs~~-~~v~e~~~~~k~~~~ 97 (471)
T KOG1799|consen 20 TYGGVSGTAIRPIALRAVTSIARALS-GFPILATGDIDSAESGLQFLHSGASVLQVCSAIQSQD-FTVIEDYTGLKALLY 97 (471)
T ss_pred eccccchhhccchhHHHHHHHhhccC-CceeeccCCcchhhhcCccccccHHHHHHHHHHhcCC-Ccccccccchhhhcc
Confidence 57999999999999999999999987 7999999999999999999999999999999997653 333333355555554
Q ss_pred HcCCCCHHHhh
Q 012517 447 RDGFKSIIEAV 457 (462)
Q Consensus 447 ~~G~~si~e~~ 457 (462)
. ++|++++
T Consensus 98 l---~~ie~~v 105 (471)
T KOG1799|consen 98 L---KSIEELV 105 (471)
T ss_pred h---hhhhhhc
Confidence 3 3444443
No 234
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.023 Score=54.43 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=62.7
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
+||+.-.++ |+...+++++.+.|++.|-++.++. .+.+.|+.+++..+ =
T Consensus 16 I~Vlr~~~~----e~a~~~a~Ali~gGi~~IEITl~sp-------------------------~a~e~I~~l~~~~p--~ 64 (211)
T COG0800 16 VPVIRGDDV----EEALPLAKALIEGGIPAIEITLRTP-------------------------AALEAIRALAKEFP--E 64 (211)
T ss_pred eEEEEeCCH----HHHHHHHHHHHHcCCCeEEEecCCC-------------------------CHHHHHHHHHHhCc--c
Confidence 566555444 4889999999999999999987652 26789999999986 4
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEE
Q 012517 396 PLIGCGGISSGEDAYRKIRAGATLV 420 (462)
Q Consensus 396 pIIg~GGI~s~~dA~e~i~aGAd~V 420 (462)
-+||.|=|-|++|+.+.+++||+++
T Consensus 65 ~lIGAGTVL~~~q~~~a~~aGa~fi 89 (211)
T COG0800 65 ALIGAGTVLNPEQARQAIAAGAQFI 89 (211)
T ss_pred cEEccccccCHHHHHHHHHcCCCEE
Confidence 6999999999999999999999987
No 235
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.32 E-value=0.023 Score=54.78 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=63.5
Q ss_pred CEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC-c
Q 012517 317 PLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK-I 395 (462)
Q Consensus 317 Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~-i 395 (462)
||+.=++.+ +.++...+++++.+.|+..+-++.++. .+++.++++++..+.+ -
T Consensus 14 ~vi~vir~~-~~~~a~~~~~al~~~Gi~~iEit~~~~-------------------------~a~~~i~~l~~~~~~~p~ 67 (213)
T PRK06552 14 GVVAVVRGE-SKEEALKISLAVIKGGIKAIEVTYTNP-------------------------FASEVIKELVELYKDDPE 67 (213)
T ss_pred CEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEECCCc-------------------------cHHHHHHHHHHHcCCCCC
Confidence 444445543 567899999999999999999987651 2678899999877421 2
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEE
Q 012517 396 PLIGCGGISSGEDAYRKIRAGATLVQ 421 (462)
Q Consensus 396 pIIg~GGI~s~~dA~e~i~aGAd~Vq 421 (462)
-+||.|-|.|.+|+.+.+++||+++.
T Consensus 68 ~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 68 VLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred eEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 48999999999999999999999885
No 236
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.32 E-value=0.045 Score=56.10 Aligned_cols=69 Identities=25% Similarity=0.291 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..+.++.+.++|+|.|++.-+. |.+ +...+.++++++..+ ++||++ |.|.|.++|
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~-----------------G~~-----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A 149 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAH-----------------GHS-----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAA 149 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCC-----------------CCc-----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHH
Confidence 45678888999999998865321 111 224678899998875 688877 999999999
Q ss_pred HHHHHhCCCEEEE
Q 012517 410 YRKIRAGATLVQL 422 (462)
Q Consensus 410 ~e~i~aGAd~Vqv 422 (462)
.+.+++|||.|.+
T Consensus 150 ~~l~~aGaD~I~v 162 (325)
T cd00381 150 RDLIDAGADGVKV 162 (325)
T ss_pred HHHHhcCCCEEEE
Confidence 9999999999987
No 237
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.30 E-value=0.038 Score=55.32 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=30.9
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 393 ~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
+++.|+++||| +++.+.++.++|+|.+.+++...
T Consensus 228 ~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 228 PHVLLEASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred CCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 36789999999 99999999999999999999763
No 238
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.29 E-value=0.19 Score=49.53 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=80.7
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLII 348 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIiv 348 (462)
.||++-+.+.. .+++.+.++++...+. ..-.+|=+. +.+| ++.+.+.|++-|-+
T Consensus 124 GADavLLI~~~---------L~~~~l~~l~~~a~~l----------Gle~LVEVh---~~~E----l~~a~~~ga~iiGI 177 (247)
T PRK13957 124 GASAILLIVRI---------LTPSQIKSFLKHASSL----------GMDVLVEVH---TEDE----AKLALDCGAEIIGI 177 (247)
T ss_pred CCCEEEeEHhh---------CCHHHHHHHHHHHHHc----------CCceEEEEC---CHHH----HHHHHhCCCCEEEE
Confidence 39999877642 2334566666655432 455556553 2223 34566788886655
Q ss_pred ecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 349 SNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 349 sNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
-|+...- +...++...+++..++.+..+|+-+||.|++|+..+..+ ||+|-||+++|.
T Consensus 178 NnRdL~t---------------------~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~ 235 (247)
T PRK13957 178 NTRDLDT---------------------FQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFME 235 (247)
T ss_pred eCCCCcc---------------------ceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhC
Confidence 5553211 223456677888888888999999999999999998876 999999999986
Q ss_pred cCCChHHHH
Q 012517 429 GGPALIPQI 437 (462)
Q Consensus 429 ~GP~~i~~i 437 (462)
.++....+
T Consensus 236 -~~d~~~~~ 243 (247)
T PRK13957 236 -KKDIRKAW 243 (247)
T ss_pred -CCCHHHHH
Confidence 46644333
No 239
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.28 E-value=0.18 Score=52.22 Aligned_cols=122 Identities=21% Similarity=0.203 Sum_probs=81.7
Q ss_pred HHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCC
Q 012517 264 HTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRL 343 (462)
Q Consensus 264 ~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~Gv 343 (462)
+.+.+++|++.|- -|.++|. .||+++-+ .++||++|-....+.+|+...++.+.+.|-
T Consensus 179 ~~~~~~~d~lqIg--------a~~~~n~----~LL~~va~----------t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn 236 (352)
T PRK13396 179 EKIAEVADVIQVG--------ARNMQNF----SLLKKVGA----------QDKPVLLKRGMAATIDEWLMAAEYILAAGN 236 (352)
T ss_pred HHHHhhCCeEEEC--------cccccCH----HHHHHHHc----------cCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 3344457888862 3445553 44555542 478999999988888999999999999999
Q ss_pred cEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec----CC--CCHHHHHHHHHhCC
Q 012517 344 DGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG----GI--SSGEDAYRKIRAGA 417 (462)
Q Consensus 344 dgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G----GI--~s~~dA~e~i~aGA 417 (462)
.-|+++.... |+ .-|+.+.....++.+..+++.. .+|||.-- |- ..+.-+...+.+||
T Consensus 237 ~~viL~erG~-rt-------------f~s~y~~~~~dl~ai~~lk~~~--~lPVi~DpsH~~G~sd~~~~~a~AAva~GA 300 (352)
T PRK13396 237 PNVILCERGI-RT-------------FDRQYTRNTLDLSVIPVLRSLT--HLPIMIDPSHGTGKSEYVPSMAMAAIAAGT 300 (352)
T ss_pred CeEEEEecCC-cc-------------CcCCCCCCCcCHHHHHHHHHhh--CCCEEECCcccCCcHHHHHHHHHHHHhhCC
Confidence 8888886522 10 0112222345778888998887 68997642 21 13467788889999
Q ss_pred CEEEEc
Q 012517 418 TLVQLY 423 (462)
Q Consensus 418 d~Vqv~ 423 (462)
|.+.+=
T Consensus 301 dGliIE 306 (352)
T PRK13396 301 DSLMIE 306 (352)
T ss_pred CeEEEE
Confidence 954443
No 240
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=96.25 E-value=0.094 Score=58.90 Aligned_cols=119 Identities=19% Similarity=0.179 Sum_probs=83.1
Q ss_pred CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEe
Q 012517 270 ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIIS 349 (462)
Q Consensus 270 aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivs 349 (462)
||+|-+-++. -+.+.+.++++...+. ..-.+|=+- +.+| ++.+.+.|++-|=+-
T Consensus 134 ADavLLI~~~---------L~~~~l~~l~~~a~~l----------Gme~LvEvh---~~~e----l~~a~~~ga~iiGIN 187 (695)
T PRK13802 134 ADLVLLIVAA---------LDDAQLKHLLDLAHEL----------GMTVLVETH---TREE----IERAIAAGAKVIGIN 187 (695)
T ss_pred CCEeehhHhh---------cCHHHHHHHHHHHHHc----------CCeEEEEeC---CHHH----HHHHHhCCCCEEEEe
Confidence 8999887653 2234566666665432 455666663 2223 355677888865555
Q ss_pred cCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhc
Q 012517 350 NTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYG 429 (462)
Q Consensus 350 NTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~ 429 (462)
|+.+.- +...++...+++..++.++.+|+-+||.+++|+..+.++|||+|-|++++|.
T Consensus 188 nRdL~t---------------------f~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~- 245 (695)
T PRK13802 188 ARNLKD---------------------LKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVAT- 245 (695)
T ss_pred CCCCcc---------------------ceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhC-
Confidence 543210 2335667778888888889999999999999999999999999999999986
Q ss_pred CCChHHH
Q 012517 430 GPALIPQ 436 (462)
Q Consensus 430 GP~~i~~ 436 (462)
.++.-..
T Consensus 246 ~~dp~~~ 252 (695)
T PRK13802 246 ADDHELA 252 (695)
T ss_pred CCCHHHH
Confidence 4664333
No 241
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.24 E-value=0.27 Score=47.03 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhh
Q 012517 252 SEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKED 330 (462)
Q Consensus 252 t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~ 330 (462)
+++ +....++.+.+ ....+||.+.+|+. .+.++.+++.. .-++|=.-.=++.
T Consensus 14 ~~~---~a~~ia~al~~gGi~~iEit~~tp~a------------~~~I~~l~~~~----------~~~~vGAGTVl~~-- 66 (201)
T PRK06015 14 DVE---HAVPLARALAAGGLPAIEITLRTPAA------------LDAIRAVAAEV----------EEAIVGAGTILNA-- 66 (201)
T ss_pred CHH---HHHHHHHHHHHCCCCEEEEeCCCccH------------HHHHHHHHHHC----------CCCEEeeEeCcCH--
Confidence 455 56666666665 39999999988763 24555555431 1244444433553
Q ss_pred HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHH
Q 012517 331 LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAY 410 (462)
Q Consensus 331 ~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~ 410 (462)
+-++.+.++|++.++--+. .-++++..++. ++| ..=|+.|+.++.
T Consensus 67 --e~a~~ai~aGA~FivSP~~----------------------------~~~vi~~a~~~---~i~--~iPG~~TptEi~ 111 (201)
T PRK06015 67 --KQFEDAAKAGSRFIVSPGT----------------------------TQELLAAANDS---DVP--LLPGAATPSEVM 111 (201)
T ss_pred --HHHHHHHHcCCCEEECCCC----------------------------CHHHHHHHHHc---CCC--EeCCCCCHHHHH
Confidence 3467788899998763221 12344444332 344 456999999999
Q ss_pred HHHHhCCCEEEEchhhhhcCCChHHHHH
Q 012517 411 RKIRAGATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 411 e~i~aGAd~Vqv~Tali~~GP~~i~~i~ 438 (462)
+.+++||+.|-++=+-...||.+++.++
T Consensus 112 ~A~~~Ga~~vK~FPa~~~GG~~yikal~ 139 (201)
T PRK06015 112 ALREEGYTVLKFFPAEQAGGAAFLKALS 139 (201)
T ss_pred HHHHCCCCEEEECCchhhCCHHHHHHHH
Confidence 9999999999999886666799999987
No 242
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.24 E-value=0.14 Score=50.61 Aligned_cols=121 Identities=15% Similarity=0.075 Sum_probs=80.3
Q ss_pred HcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcE
Q 012517 266 LSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDG 345 (462)
Q Consensus 266 l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~Gvdg 345 (462)
+.+++|++.|= -+.++| .++|+++.+ .++||++|-....+.+|+...++.+.+.|..-
T Consensus 95 ~~e~vdilqIg--------s~~~~n----~~LL~~va~----------tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~ 152 (250)
T PRK13397 95 AYDYLDVIQVG--------ARNMQN----FEFLKTLSH----------IDKPILFKRGLMATIEEYLGALSYLQDTGKSN 152 (250)
T ss_pred HHhcCCEEEEC--------cccccC----HHHHHHHHc----------cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 33468988762 244444 345555542 47899999987788889999999999999877
Q ss_pred EEEec-CCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe----cCCCC--HHHHHHHHHhCCC
Q 012517 346 LIISN-TTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC----GGISS--GEDAYRKIRAGAT 418 (462)
Q Consensus 346 IivsN-Tt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~----GGI~s--~~dA~e~i~aGAd 418 (462)
|++.- .+...+. +.-....+..+..+++.+ .+|||.- +|+.. ..-+...+.+||+
T Consensus 153 i~L~eRg~~~Y~~----------------~~~n~~dl~ai~~lk~~~--~lPVivd~SHs~G~r~~v~~~a~AAvA~GAd 214 (250)
T PRK13397 153 IILCERGVRGYDV----------------ETRNMLDIMAVPIIQQKT--DLPIIVDVSHSTGRRDLLLPAAKIAKAVGAN 214 (250)
T ss_pred EEEEccccCCCCC----------------ccccccCHHHHHHHHHHh--CCCeEECCCCCCcccchHHHHHHHHHHhCCC
Confidence 77775 3211110 000134567788888877 6898773 55433 3567888899999
Q ss_pred EEEEchhh
Q 012517 419 LVQLYTAF 426 (462)
Q Consensus 419 ~Vqv~Tal 426 (462)
.+.+=+-+
T Consensus 215 Gl~IE~H~ 222 (250)
T PRK13397 215 GIMMEVHP 222 (250)
T ss_pred EEEEEecC
Confidence 66665433
No 243
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=96.24 E-value=0.021 Score=53.28 Aligned_cols=73 Identities=27% Similarity=0.307 Sum_probs=53.0
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
++.+.+.|+|.+.++--...... + + ..+..++.+.++.+.. ++||++.||| +++++.+..+
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk-----~------~-----~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~ 168 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSK-----P------G-----APPLGLDGLREIARAS--PIPVYALGGI-TPENIPELRE 168 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSS-----S------S------TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHH
T ss_pred HHHhhhcCCCEEEECCccCCCCC-----c------c-----ccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHH
Confidence 67777899999998854322110 0 1 1334677888999988 6999999999 6999999999
Q ss_pred hCCCEEEEchhh
Q 012517 415 AGATLVQLYTAF 426 (462)
Q Consensus 415 aGAd~Vqv~Tal 426 (462)
+||+.|-+.+++
T Consensus 169 ~Ga~gvAvi~aI 180 (180)
T PF02581_consen 169 AGADGVAVISAI 180 (180)
T ss_dssp TT-SEEEESHHH
T ss_pred cCCCEEEEEeeC
Confidence 999999998864
No 244
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.20 E-value=0.03 Score=54.02 Aligned_cols=68 Identities=25% Similarity=0.249 Sum_probs=58.4
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH
Q 012517 327 SKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG 406 (462)
Q Consensus 327 ~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~ 406 (462)
+.++..++++.+.+.|++.|-++.++ +..++.++++++..+ + -+||+|-|.+.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~-------------------------~~~~~~I~~l~~~~p-~-~~IGAGTVl~~ 77 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRT-------------------------PAALEAIRLIAKEVP-E-ALIGAGTVLNP 77 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-------------------------ccHHHHHHHHHHHCC-C-CEEEEeeccCH
Confidence 45689999999999999999988554 125788999998886 3 68999999999
Q ss_pred HHHHHHHHhCCCEEE
Q 012517 407 EDAYRKIRAGATLVQ 421 (462)
Q Consensus 407 ~dA~e~i~aGAd~Vq 421 (462)
+++.+.+++||+.+.
T Consensus 78 ~~a~~a~~aGA~Fiv 92 (212)
T PRK05718 78 EQLAQAIEAGAQFIV 92 (212)
T ss_pred HHHHHHHHcCCCEEE
Confidence 999999999999874
No 245
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=96.12 E-value=0.098 Score=50.43 Aligned_cols=93 Identities=24% Similarity=0.284 Sum_probs=64.8
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
.-.+|=+|.. +. +-+..+.+.|+|.|.+..-..... + + + + .+.-++.++.+++.. .+
T Consensus 103 ~~~iIG~S~h-~~----eea~~A~~~g~DYv~~GpifpT~t---K--~-----~----~--~~~G~~~l~~~~~~~--~i 159 (211)
T COG0352 103 PGLIIGLSTH-DL----EEALEAEELGADYVGLGPIFPTST---K--P-----D----A--PPLGLEGLREIRELV--NI 159 (211)
T ss_pred CCCEEEeecC-CH----HHHHHHHhcCCCEEEECCcCCCCC---C--C-----C----C--CccCHHHHHHHHHhC--CC
Confidence 3456666654 32 335667778899998764331110 0 0 0 0 223467778888877 59
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCCh
Q 012517 396 PLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPAL 433 (462)
Q Consensus 396 pIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~ 433 (462)
|+++.|||+ .+.+.+.+++||+.|-+-|+++. ..+.
T Consensus 160 P~vAIGGi~-~~nv~~v~~~Ga~gVAvvsai~~-a~d~ 195 (211)
T COG0352 160 PVVAIGGIN-LENVPEVLEAGADGVAVVSAITS-AADP 195 (211)
T ss_pred CEEEEcCCC-HHHHHHHHHhCCCeEEehhHhhc-CCCH
Confidence 999999996 99999999999999999999974 4543
No 246
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=96.11 E-value=0.17 Score=47.98 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCCh
Q 012517 380 SNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPAL 433 (462)
Q Consensus 380 al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~ 433 (462)
.++.++++. . ++|++..||| +++.+.+.+++| ++.|.+.|++.. .|+.
T Consensus 142 ~~~~l~~~~--~--~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~-~pg~ 190 (203)
T cd00405 142 DWSLLRGLA--S--RKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVET-SPGI 190 (203)
T ss_pred ChHHhhccc--c--CCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccC-CCCC
Confidence 556666655 3 6899999999 899999999999 999999999964 4664
No 247
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.07 E-value=0.073 Score=53.98 Aligned_cols=89 Identities=24% Similarity=0.396 Sum_probs=66.4
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+.++++.+.+.|+|||++..||-.-+- || .+.-.++++.+.+.+++++|||+--|=.+
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~-------------Ls----~eEr~~v~~~~v~~~~grvpviaG~g~~~ 84 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPT-------------LT----LEERKEVLEAVVEAVGGRVPVIAGVGSNS 84 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchh-------------cC----HHHHHHHHHHHHHHHCCCCcEEEecCCCc
Confidence 56678999999999999999999888743210 11 12235778888889988999888666666
Q ss_pred HHHHHHHH----HhCCCEEEEchhhhhcCCC
Q 012517 406 GEDAYRKI----RAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 406 ~~dA~e~i----~aGAd~Vqv~Tali~~GP~ 432 (462)
-+++.+.- +.|||.+++.+...+. |.
T Consensus 85 t~eai~lak~a~~~Gad~il~v~PyY~k-~~ 114 (299)
T COG0329 85 TAEAIELAKHAEKLGADGILVVPPYYNK-PS 114 (299)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcC-CC
Confidence 66666655 4799999999999654 54
No 248
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.06 E-value=0.041 Score=59.59 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHH
Q 012517 331 LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAY 410 (462)
Q Consensus 331 ~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~ 410 (462)
..+.++.+.++|+|.|++..+ .+. ....++.++++++..+ +++|++ |.|.|.++|.
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a-~G~---------------------s~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~ 297 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSS-QGN---------------------SIYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAK 297 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecC-CCC---------------------chHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHH
Confidence 378889999999999887532 111 1124678999999875 677766 9999999999
Q ss_pred HHHHhCCCEEEEc
Q 012517 411 RKIRAGATLVQLY 423 (462)
Q Consensus 411 e~i~aGAd~Vqv~ 423 (462)
+++++|||.|-++
T Consensus 298 ~~~~aGad~I~vg 310 (495)
T PTZ00314 298 NLIDAGADGLRIG 310 (495)
T ss_pred HHHHcCCCEEEEC
Confidence 9999999999764
No 249
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.042 Score=53.70 Aligned_cols=90 Identities=26% Similarity=0.258 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..+.++...+.|+..+++..-. |-.-| .+...+.++++.+.+ ++||=.-|||+|-+++
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLd----------------gA~~g---~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v 90 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLD----------------GAKAG---GPRNLEAIKEILEAT--DVPVQVGGGIRSLEDV 90 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeecc----------------ccccC---CcccHHHHHHHHHhC--CCCEEeeCCcCCHHHH
Confidence 66788999999999999886321 11111 234678999999999 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 410 YRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
...+.+|++-|-++|..+. +|.+++++.+..
T Consensus 91 ~~ll~~G~~rViiGt~av~-~p~~v~~~~~~~ 121 (241)
T COG0106 91 EALLDAGVARVIIGTAAVK-NPDLVKELCEEY 121 (241)
T ss_pred HHHHHCCCCEEEEecceec-CHHHHHHHHHHc
Confidence 9999999999999999964 799998887654
No 250
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=96.00 E-value=0.58 Score=44.89 Aligned_cols=122 Identities=19% Similarity=0.131 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCC-------hh
Q 012517 257 ADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLS-------KE 329 (462)
Q Consensus 257 ~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~-------~~ 329 (462)
+.|++.+..++ +|++.+|.+.. .+.+..+++..++. +..+-+.+.++..-. .+
T Consensus 66 ~~~~~~~~~~g--ad~vTvh~~~g----------~~~l~~~~~~~~~~--------~~~v~~v~~lss~~~~~~~~~~~~ 125 (213)
T TIGR01740 66 KLQYESKIKQG--ADMVNVHGVAG----------SESVEAAKEAASEG--------GRGLLAVTELTSMGSLDYGEDTME 125 (213)
T ss_pred HHHHHHHHhcC--CCEEEEcCCCC----------HHHHHHHHHHhhcC--------CCeEEEEEcCCCCChhhhCcCHHH
Confidence 35655544444 99999997542 12344444443321 223345556763211 13
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH-HH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG-ED 408 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~-~d 408 (462)
.+.++++.+.+.|++|++.+ -+.+.++|+..+ + -++.++||.-. .+
T Consensus 126 ~v~~~a~~~~~~g~~g~v~~-------------------------------~~~~~~ir~~~~-~-~~~vtPGI~~~g~~ 172 (213)
T TIGR01740 126 KVLEYAKEAKAFGLDGPVCS-------------------------------AEEAKEIRKFTG-D-FLILTPGIRLQSKG 172 (213)
T ss_pred HHHHHHHHhhhcCCeEEEeC-------------------------------HHHHHHHHHhcC-C-ceEEeCCcCCCCCC
Confidence 45566666667788887521 134567777775 4 57889999732 22
Q ss_pred H---------HHHHHhCCCEEEEchhhhhcCCC
Q 012517 409 A---------YRKIRAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 409 A---------~e~i~aGAd~Vqv~Tali~~GP~ 432 (462)
. .+++++|||.+-++|++ ++.++
T Consensus 173 ~~dq~~~~~~~~~~~~Gad~iVvGr~I-~~~~d 204 (213)
T TIGR01740 173 ADDQQRVVTLEDAKEAGADVIIVGRGI-YAAED 204 (213)
T ss_pred cCCccccCCHHHHHHcCCCEEEEChhh-cCCCC
Confidence 2 67788999999999987 45565
No 251
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.95 E-value=0.21 Score=48.66 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHH----
Q 012517 332 EDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGE---- 407 (462)
Q Consensus 332 ~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~---- 407 (462)
..++..+.+.|+||++++.+ .++.+++..+. -.++.++||. ++
T Consensus 138 ~~~a~~a~~~g~dgvv~~~~-------------------------------~~~~ir~~~~~-~~~~v~pGI~-~~g~~~ 184 (230)
T PRK00230 138 LRLAKLAQEAGLDGVVCSAQ-------------------------------EAAAIREATGP-DFLLVTPGIR-PAGSDA 184 (230)
T ss_pred HHHHHHHHHcCCeEEEeChH-------------------------------HHHHHHhhcCC-ceEEEcCCcC-CCCCCc
Confidence 35567778899999986522 13556666643 3457778997 34
Q ss_pred -------HHHHHHHhCCCEEEEchhhhhcCCC
Q 012517 408 -------DAYRKIRAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 408 -------dA~e~i~aGAd~Vqv~Tali~~GP~ 432 (462)
...+.+++||+.|.+||++ ++.++
T Consensus 185 ~dq~~~~~~~~ai~~Gad~iVvGR~I-~~a~d 215 (230)
T PRK00230 185 GDQKRVMTPAQAIAAGSDYIVVGRPI-TQAAD 215 (230)
T ss_pred chHHHHhCHHHHHHcCCCEEEECCcc-cCCCC
Confidence 5778889999999999998 44555
No 252
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.89 E-value=0.35 Score=48.30 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=82.3
Q ss_pred HHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcC
Q 012517 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 263 ~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~G 342 (462)
++.+.+|+|.|.|= -|..|+ .+||+++.+ .++||++|=...++.+++...++.+...|
T Consensus 100 ~~~~ae~vDilQIg--------Ar~~rn----tdLL~a~~~----------t~kpV~lKrGqf~s~~e~~~aae~i~~~G 157 (281)
T PRK12457 100 AAPVAEVADVLQVP--------AFLARQ----TDLVVAIAK----------TGKPVNIKKPQFMSPTQMKHVVSKCREAG 157 (281)
T ss_pred HHHHhhhCeEEeeC--------chhhch----HHHHHHHhc----------cCCeEEecCCCcCCHHHHHHHHHHHHHcC
Confidence 55566779999873 233333 256666643 47899999888888889999999999999
Q ss_pred CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe---------------cCCCC--
Q 012517 343 LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC---------------GGISS-- 405 (462)
Q Consensus 343 vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~---------------GGI~s-- 405 (462)
-.-|+++-+... - ||.- ....+..+..+++... .+|||.- ||...
T Consensus 158 n~~vilcERG~~-f-------------gy~~---~~~D~~~ip~mk~~~t-~lPVi~DpSHsvq~p~~~g~~s~G~re~v 219 (281)
T PRK12457 158 NDRVILCERGSS-F-------------GYDN---LVVDMLGFRQMKRTTG-DLPVIFDVTHSLQCRDPLGAASGGRRRQV 219 (281)
T ss_pred CCeEEEEeCCCC-C-------------CCCC---cccchHHHHHHHhhCC-CCCEEEeCCccccCCCCCCCCCCCCHHHH
Confidence 999999865321 0 1111 1234556667777532 5888852 44332
Q ss_pred HHHHHHHHHhCCCEEEEch
Q 012517 406 GEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 406 ~~dA~e~i~aGAd~Vqv~T 424 (462)
+.-|...+.+|||.+.+=+
T Consensus 220 ~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 220 LDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred HHHHHHHHHhCCCEEEEEe
Confidence 2457778889999998865
No 253
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.89 E-value=0.13 Score=52.76 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=65.8
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
+.||+++|... +.++..++++.+.++|+|+|.+ |-. .+ +. .. +..|........++++.+++.+ +
T Consensus 101 ~~pvi~sI~g~-~~~e~~~~a~~~~~agad~iel-N~s--cp------p~--~~-~~~g~~~~~~~~eil~~v~~~~--~ 165 (334)
T PRK07565 101 DIPVIASLNGS-SAGGWVDYARQIEQAGADALEL-NIY--YL------PT--DP-DISGAEVEQRYLDILRAVKSAV--S 165 (334)
T ss_pred CCcEEEEeccC-CHHHHHHHHHHHHHcCCCEEEE-eCC--CC------CC--CC-CCccccHHHHHHHHHHHHHhcc--C
Confidence 58999999774 4467889999999999999986 221 10 00 01 1123223334578889999988 6
Q ss_pred ccEEEe--cCCCCHHHHHHHH-HhCCCEEEEchhh
Q 012517 395 IPLIGC--GGISSGEDAYRKI-RAGATLVQLYTAF 426 (462)
Q Consensus 395 ipIIg~--GGI~s~~dA~e~i-~aGAd~Vqv~Tal 426 (462)
+||+.- +++.+..+..+.+ ++|+|.|-+...+
T Consensus 166 iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 166 IPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCc
Confidence 999876 4555666666655 5999998776554
No 254
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.88 E-value=0.41 Score=49.32 Aligned_cols=120 Identities=23% Similarity=0.235 Sum_probs=79.0
Q ss_pred HcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcE
Q 012517 266 LSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDG 345 (462)
Q Consensus 266 l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~Gvdg 345 (462)
+.+++|++.| . -|.++|.+ +|+++-+ .++||++|-....+.+|+...++.+...|-+-
T Consensus 173 l~~~vd~lqI--g------Ar~~~N~~----LL~~va~----------~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~ 230 (335)
T PRK08673 173 VAEYVDILQI--G------ARNMQNFD----LLKEVGK----------TNKPVLLKRGMSATIEEWLMAAEYILAEGNPN 230 (335)
T ss_pred HHHhCCeEEE--C------cccccCHH----HHHHHHc----------CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 3445788776 2 34455544 3444432 47899999998888889999999999999887
Q ss_pred EEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe----cCCC--CHHHHHHHHHhCCCE
Q 012517 346 LIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC----GGIS--SGEDAYRKIRAGATL 419 (462)
Q Consensus 346 IivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~----GGI~--s~~dA~e~i~aGAd~ 419 (462)
|++...-. +. +.+.+.....+..+..+++.. .+|||+- +|.. -+..+...+.+|||.
T Consensus 231 viL~erG~-~t--------------f~~~~~~~ldl~ai~~lk~~~--~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdG 293 (335)
T PRK08673 231 VILCERGI-RT--------------FETATRNTLDLSAVPVIKKLT--HLPVIVDPSHATGKRDLVEPLALAAVAAGADG 293 (335)
T ss_pred EEEEECCC-CC--------------CCCcChhhhhHHHHHHHHHhc--CCCEEEeCCCCCccccchHHHHHHHHHhCCCE
Confidence 87775311 00 011112334677888888887 6899873 3332 136788889999995
Q ss_pred EEEch
Q 012517 420 VQLYT 424 (462)
Q Consensus 420 Vqv~T 424 (462)
+.+=.
T Consensus 294 liIE~ 298 (335)
T PRK08673 294 LIVEV 298 (335)
T ss_pred EEEEe
Confidence 55543
No 255
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.86 E-value=2.8 Score=43.72 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=79.3
Q ss_pred HcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcE
Q 012517 266 LSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDG 345 (462)
Q Consensus 266 l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~Gvdg 345 (462)
+.+++|++-| .| +.+++. .+|+++.+ .++||++|-....+.+|+...++.+.+.|.+-
T Consensus 198 l~~~vd~lkI--~s------~~~~n~----~LL~~~a~----------~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~ 255 (360)
T PRK12595 198 ALDYVDVIQI--GA------RNMQNF----ELLKAAGR----------VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQ 255 (360)
T ss_pred HHHhCCeEEE--Cc------ccccCH----HHHHHHHc----------cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 3344787765 22 334442 55666542 47899999987778889999999999999877
Q ss_pred EEEec-CCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE-e---cCCCCHH--HHHHHHHhCCC
Q 012517 346 LIISN-TTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG-C---GGISSGE--DAYRKIRAGAT 418 (462)
Q Consensus 346 IivsN-Tt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg-~---GGI~s~~--dA~e~i~aGAd 418 (462)
|++.- .+...+. + + .....+..+..+++.. .+||+. + +|-.+.. -+...+.+|||
T Consensus 256 i~L~erg~s~yp~----~-------~-----~~~ldl~~i~~lk~~~--~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAd 317 (360)
T PRK12595 256 IILCERGIRTYEK----A-------T-----RNTLDISAVPILKQET--HLPVMVDVTHSTGRRDLLLPTAKAALAIGAD 317 (360)
T ss_pred EEEECCccCCCCC----C-------C-----CCCcCHHHHHHHHHHh--CCCEEEeCCCCCcchhhHHHHHHHHHHcCCC
Confidence 87775 3321110 0 0 1123678888999877 689888 3 3322233 66778899999
Q ss_pred EEEEchhh
Q 012517 419 LVQLYTAF 426 (462)
Q Consensus 419 ~Vqv~Tal 426 (462)
.+.+=+-+
T Consensus 318 g~~iE~H~ 325 (360)
T PRK12595 318 GVMAEVHP 325 (360)
T ss_pred eEEEEecC
Confidence 77766554
No 256
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.81 E-value=0.12 Score=52.17 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=65.3
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+..+++.+.+.|++||++..+|-.-. -|| .+.-.++++.+.+.+++++|||+.-|-.+
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~-------------~Ls----~~Er~~l~~~~~~~~~g~~pvi~gv~~~~ 80 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGGTSGEPG-------------SLT----LEERKQAIENAIDQIAGRIPFAPGTGALN 80 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccc-------------cCC----HHHHHHHHHHHHHHhCCCCcEEEECCcch
Confidence 5667899999999999999999887763211 111 11235677777888888899986666677
Q ss_pred HHHHHHHH----HhCCCEEEEchhhhhcCCC
Q 012517 406 GEDAYRKI----RAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 406 ~~dA~e~i----~aGAd~Vqv~Tali~~GP~ 432 (462)
-+|+.+.. ++|||.|++...+.+ .|.
T Consensus 81 t~~ai~~a~~A~~~Gad~v~v~pP~y~-~~~ 110 (294)
T TIGR02313 81 HDETLELTKFAEEAGADAAMVIVPYYN-KPN 110 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCccCC-CCC
Confidence 88776665 469999999999854 454
No 257
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=95.81 E-value=0.12 Score=52.02 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec--CCCCHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG--GISSGE 407 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G--GI~s~~ 407 (462)
+.++..+.+.+.|+|.+-++..+.- |-+.+. .++.++.++++++.+ ++|++.-| ||. .+
T Consensus 154 ~~eea~~f~~~tg~DyLAvaiG~~h--------------g~~~~~--~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e 214 (281)
T PRK06806 154 STTEAKRFAEETDVDALAVAIGNAH--------------GMYNGD--PNLRFDRLQEINDVV--HIPLVLHGGSGIS-PE 214 (281)
T ss_pred CHHHHHHHHHhhCCCEEEEccCCCC--------------CCCCCC--CccCHHHHHHHHHhc--CCCEEEECCCCCC-HH
Confidence 4556666666789999988544311 111111 235678999999998 79999999 986 78
Q ss_pred HHHHHHHhCCCEEEEchhhhh
Q 012517 408 DAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 408 dA~e~i~aGAd~Vqv~Tali~ 428 (462)
++.+.+++|++-|-+.|.+..
T Consensus 215 ~~~~~i~~G~~kinv~T~i~~ 235 (281)
T PRK06806 215 DFKKCIQHGIRKINVATATFN 235 (281)
T ss_pred HHHHHHHcCCcEEEEhHHHHH
Confidence 899999999999999999964
No 258
>PLN02417 dihydrodipicolinate synthase
Probab=95.79 E-value=0.11 Score=52.12 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=64.8
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+.++++.+.+.|++||++..|+-.-. -+| .+.-.++++.+.+.+++++|||+.=|=.+
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~-------------~ls----~~Er~~~~~~~~~~~~~~~pvi~gv~~~~ 81 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTTGEGQ-------------LMS----WDEHIMLIGHTVNCFGGKIKVIGNTGSNS 81 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcchh-------------hCC----HHHHHHHHHHHHHHhCCCCcEEEECCCcc
Confidence 5667899999999999999999877763211 011 11234667777777888899887766667
Q ss_pred HHHHHHHH----HhCCCEEEEchhhhhcCCC
Q 012517 406 GEDAYRKI----RAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 406 ~~dA~e~i----~aGAd~Vqv~Tali~~GP~ 432 (462)
.+|+.+.. ++|||.|++.....+ .|.
T Consensus 82 t~~~i~~a~~a~~~Gadav~~~~P~y~-~~~ 111 (280)
T PLN02417 82 TREAIHATEQGFAVGMHAALHINPYYG-KTS 111 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCccC-CCC
Confidence 78887765 589999999999744 354
No 259
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.75 E-value=0.13 Score=51.82 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=63.0
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+..+++.+.+.|++||.+..+|-.-. -+| .+.-.++++.+.+.+++++|||+.-|- +
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~-------------~Ls----~eEr~~l~~~~~~~~~~~~pvi~gv~~-~ 79 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFF-------------SLT----PDEYAQVVRAAVEETAGRVPVLAGAGY-G 79 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcc-------------cCC----HHHHHHHHHHHHHHhCCCCCEEEecCC-C
Confidence 5667889999999999999999877763211 111 112356777778888788998886665 7
Q ss_pred HHHHHHHH----HhCCCEEEEchhhhh
Q 012517 406 GEDAYRKI----RAGATLVQLYTAFAY 428 (462)
Q Consensus 406 ~~dA~e~i----~aGAd~Vqv~Tali~ 428 (462)
-+++.+.. ++|||.+++.....+
T Consensus 80 t~~~i~~a~~a~~~Gad~v~~~pP~y~ 106 (289)
T cd00951 80 TATAIAYAQAAEKAGADGILLLPPYLT 106 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 78888766 479999999998844
No 260
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.74 E-value=0.11 Score=52.60 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=61.9
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+..+++.+.+.|+|||.+..||-.-. -+| .+.-.++++.+.+.+++++|||+.-|- +
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~-------------~Lt----~eEr~~~~~~~~~~~~~~~pvi~gv~~-~ 86 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGTGEFF-------------SLT----PDEYSQVVRAAVETTAGRVPVIAGAGG-G 86 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcc-------------cCC----HHHHHHHHHHHHHHhCCCCcEEEecCC-C
Confidence 5667899999999999999999877763211 111 112356777788888888998855553 7
Q ss_pred HHHHHHHH----HhCCCEEEEchhhhh
Q 012517 406 GEDAYRKI----RAGATLVQLYTAFAY 428 (462)
Q Consensus 406 ~~dA~e~i----~aGAd~Vqv~Tali~ 428 (462)
-+++.+.. ++|||.|++.....+
T Consensus 87 t~~~i~~~~~a~~~Gadav~~~pP~y~ 113 (303)
T PRK03620 87 TAQAIEYAQAAERAGADGILLLPPYLT 113 (303)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 77887766 479999999998744
No 261
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=95.73 E-value=0.14 Score=51.04 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=48.0
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
+..+.+.|+|.|-+.|-. .+.++++.+.++..+||.++||| +.+.+.++.+
T Consensus 191 a~~A~~~gaDyI~ld~~~----------------------------~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~ 241 (265)
T TIGR00078 191 AEEAAEAGADIIMLDNMK----------------------------PEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAE 241 (265)
T ss_pred HHHHHHcCCCEEEECCCC----------------------------HHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHH
Confidence 455678999998776532 13445555555445999999999 5999999999
Q ss_pred hCCCEEEEchhhhh
Q 012517 415 AGATLVQLYTAFAY 428 (462)
Q Consensus 415 aGAd~Vqv~Tali~ 428 (462)
+|+|.+.+ +++..
T Consensus 242 ~Gvd~Isv-gait~ 254 (265)
T TIGR00078 242 TGVDVISS-GALTH 254 (265)
T ss_pred cCCCEEEe-CHHHc
Confidence 99999999 55544
No 262
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=95.72 E-value=0.4 Score=47.39 Aligned_cols=120 Identities=18% Similarity=0.149 Sum_probs=79.8
Q ss_pred HHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcC
Q 012517 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 263 ~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~G 342 (462)
++.+.+|+|.|.|- -|..|+. +||+++-+ .++||++|=...++.+++...++.+...|
T Consensus 86 ~~~vae~vDilQIg--------Arn~rn~----~LL~a~g~----------t~kpV~lKrG~~~t~~e~l~aaeyi~~~G 143 (258)
T TIGR01362 86 CEPVAEVVDIIQIP--------AFLCRQT----DLLVAAAK----------TGRIVNVKKGQFLSPWDMKNVVEKVLSTG 143 (258)
T ss_pred HHHHHhhCcEEEeC--------chhcchH----HHHHHHhc----------cCCeEEecCCCcCCHHHHHHHHHHHHHcC
Confidence 44556679999873 2333442 66666643 47899999998888889999999999999
Q ss_pred CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe---------------cCCCCH-
Q 012517 343 LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC---------------GGISSG- 406 (462)
Q Consensus 343 vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~---------------GGI~s~- 406 (462)
-+-|+++-+... . |+.-. -..++.+..+++. .+|||.- ||..+.
T Consensus 144 n~~viLcERG~t-------------f-~y~r~---~~D~~~ip~~k~~---~~PVi~DpSHsvq~pg~~g~~s~G~r~~v 203 (258)
T TIGR01362 144 NKNILLCERGTS-------------F-GYNNL---VVDMRSLPIMREL---GCPVIFDATHSVQQPGGLGGASGGLREFV 203 (258)
T ss_pred CCcEEEEeCCCC-------------c-CCCCc---ccchhhhHHHHhc---CCCEEEeCCccccCCCCCCCCCCCcHHHH
Confidence 999999854321 0 11111 1133445555553 4788862 444432
Q ss_pred -HHHHHHHHhCCCEEEEch
Q 012517 407 -EDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 407 -~dA~e~i~aGAd~Vqv~T 424 (462)
.-++..+.+|||.+++=+
T Consensus 204 ~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 204 PTLARAAVAVGIDGLFMET 222 (258)
T ss_pred HHHHHHHHHhCCCEEEEEe
Confidence 346677889999998865
No 263
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=95.71 E-value=0.052 Score=53.57 Aligned_cols=119 Identities=23% Similarity=0.210 Sum_probs=80.4
Q ss_pred HcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcE
Q 012517 266 LSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDG 345 (462)
Q Consensus 266 l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~Gvdg 345 (462)
+.+|+|.|.| |-|.+||-+.|. ++- ..++||++|=...-+.+|+..-|+-+...|-..
T Consensus 125 ~~~y~Dilqv--------GARNMQNF~LLk----e~G----------~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~ 182 (286)
T COG2876 125 AAEYADILQV--------GARNMQNFALLK----EVG----------RQNKPVLLKRGLSATIEEWLNAAEYILSHGNGN 182 (286)
T ss_pred HHhhhhHHHh--------cccchhhhHHHH----Hhc----------ccCCCeEEecCccccHHHHHHHHHHHHhCCCCc
Confidence 3445676654 346677755443 332 247999999999888899999999999999999
Q ss_pred EEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec----CCCCHH--HHHHHHHhCCCE
Q 012517 346 LIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG----GISSGE--DAYRKIRAGATL 419 (462)
Q Consensus 346 IivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G----GI~s~~--dA~e~i~aGAd~ 419 (462)
||++-..+.--+... -.-..+..|..+++.+ .+|||..= |=.+.. -|...+.+|||.
T Consensus 183 vILCERGIRtfe~~T---------------RntLDi~aV~~~kq~T--HLPVivDpSH~~Grr~lv~pla~AA~AaGAdg 245 (286)
T COG2876 183 VILCERGIRTFEKAT---------------RNTLDISAVPILKQET--HLPVIVDPSHATGRRDLVEPLAKAAIAAGADG 245 (286)
T ss_pred EEEEecccccccccc---------------cceechHHHHHHHhhc--CCCEEECCCCcccchhhHHHHHHHHHhccCCe
Confidence 999876432111000 0123567788899988 79999743 222222 356677899999
Q ss_pred EEEc
Q 012517 420 VQLY 423 (462)
Q Consensus 420 Vqv~ 423 (462)
+++=
T Consensus 246 lmiE 249 (286)
T COG2876 246 LMIE 249 (286)
T ss_pred eEEE
Confidence 9873
No 264
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.71 E-value=0.28 Score=48.75 Aligned_cols=95 Identities=16% Similarity=0.043 Sum_probs=68.5
Q ss_pred CCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecC-CccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC
Q 012517 314 GPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNT-TISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR 392 (462)
Q Consensus 314 ~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNT-t~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~ 392 (462)
.++||++|-....+.+|+...++.+.+.|.+-|++.-. +... -+.+.....++.+..+++..
T Consensus 131 ~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y----------------~~~~~~~~dl~~i~~lk~~~- 193 (260)
T TIGR01361 131 QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTF----------------EKATRNTLDLSAVPVLKKET- 193 (260)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCC----------------CCCCcCCcCHHHHHHHHHhh-
Confidence 47899999998878889999999999999877777543 2111 01122335778888999877
Q ss_pred CCccEEE-ecCCCC-----HHHHHHHHHhCCCEEEEchhh
Q 012517 393 GKIPLIG-CGGISS-----GEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 393 ~~ipIIg-~GGI~s-----~~dA~e~i~aGAd~Vqv~Tal 426 (462)
.+||+. ++-... ..-+...+.+||+.+.+=+-+
T Consensus 194 -~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 194 -HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred -CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 599999 444333 567778899999976665544
No 265
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.68 E-value=0.12 Score=52.46 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=64.2
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+..+++.+.+.|++||.+..||-.-. -|| .+.-.++++.+.+.+++++|||+.-|=.+
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~-------------~Lt----~eEr~~v~~~~~~~~~grvpvi~Gv~~~~ 88 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECA-------------TLT----WEEKQAFVATVVETVAGRVPVFVGATTLN 88 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccch-------------hCC----HHHHHHHHHHHHHHhCCCCCEEEEeccCC
Confidence 5667899999999999999999877763211 011 12235677778888888899887666667
Q ss_pred HHHHHHHHH----hCCCEEEEchhhhh
Q 012517 406 GEDAYRKIR----AGATLVQLYTAFAY 428 (462)
Q Consensus 406 ~~dA~e~i~----aGAd~Vqv~Tali~ 428 (462)
.+|+.+..+ +|||.|++...+.+
T Consensus 89 t~~ai~~a~~A~~~Gad~vlv~~P~y~ 115 (309)
T cd00952 89 TRDTIARTRALLDLGADGTMLGRPMWL 115 (309)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 788877664 69999999999744
No 266
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.67 E-value=0.068 Score=51.28 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=63.8
Q ss_pred CEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCcc
Q 012517 317 PLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIP 396 (462)
Q Consensus 317 Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ip 396 (462)
|++.=++. .+.++..++++.+.+.|+..|-++.++. .+.+.++.+++..+. --
T Consensus 11 ~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~~-------------------------~~~~~i~~l~~~~~~-~~ 63 (206)
T PRK09140 11 PLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNSP-------------------------DPFDSIAALVKALGD-RA 63 (206)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCCc-------------------------cHHHHHHHHHHHcCC-Cc
Confidence 44444544 3567999999999999999999886641 145678888888752 35
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 397 LIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 397 IIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
+||+|.|.+.+++...+++||+.+...
T Consensus 64 ~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 64 LIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred EEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 899999999999999999999999764
No 267
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=95.67 E-value=0.77 Score=46.22 Aligned_cols=79 Identities=28% Similarity=0.370 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC-ccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec--CCCCH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTT-ISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG--GISSG 406 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt-~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G--GI~s~ 406 (462)
+.++..+.+.+.|+|.+.++-.+ .+. +.+.| ...++.++++++.+ ++||+.-| ||. .
T Consensus 154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~---------------~~~~~--~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~ 213 (282)
T TIGR01859 154 DPDEAEQFVKETGVDYLAAAIGTSHGK---------------YKGEP--GLDFERLKEIKELT--NIPLVLHGASGIP-E 213 (282)
T ss_pred CHHHHHHHHHHHCcCEEeeccCccccc---------------cCCCC--ccCHHHHHHHHHHh--CCCEEEECCCCCC-H
Confidence 55666666667899999876332 211 11111 23578899999998 69999999 997 6
Q ss_pred HHHHHHHHhCCCEEEEchhhhh
Q 012517 407 EDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 407 ~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
++..+.+++|++-|-++|.+..
T Consensus 214 e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 214 EQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred HHHHHHHHcCCCEEEECcHHHH
Confidence 7899999999999999999854
No 268
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.67 E-value=0.13 Score=51.84 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=62.6
Q ss_pred CChhhHHHHHHHHHHcC-CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC
Q 012517 326 LSKEDLEDIAAVAVALR-LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS 404 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~G-vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~ 404 (462)
++.+.+..+++.+.+.| +|||.+..||-.-. -+| .+.-.++++.+.+.+++++|||+.=|=.
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~-------------~Lt----~eEr~~~~~~~~~~~~~~~pvi~gv~~~ 80 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENF-------------MLS----TEEKKEIFRIAKDEAKDQIALIAQVGSV 80 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECCcccccc-------------cCC----HHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 55668899999999999 99999887763211 111 1223567777888888889986554444
Q ss_pred CHHHHHHHH----HhCCCEEEEchhhhhcCCC
Q 012517 405 SGEDAYRKI----RAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 405 s~~dA~e~i----~aGAd~Vqv~Tali~~GP~ 432 (462)
+-+|+.+.. ++|||.|++.....+ .|.
T Consensus 81 ~t~~~i~la~~a~~~Gad~v~v~~P~y~-~~~ 111 (290)
T TIGR00683 81 NLKEAVELGKYATELGYDCLSAVTPFYY-KFS 111 (290)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCcCC-CCC
Confidence 566666655 479999999998854 343
No 269
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.64 E-value=0.082 Score=53.34 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
.+++.. .+.+.|+|.|-+.|-.+. .-.++++.+++. .+++||.++||| +.+.+
T Consensus 205 tleea~-eA~~~GaD~I~LDn~~~e------------------------~l~~av~~~~~~-~~~i~leAsGGI-t~~ni 257 (288)
T PRK07428 205 TLEQVQ-EALEYGADIIMLDNMPVD------------------------LMQQAVQLIRQQ-NPRVKIEASGNI-TLETI 257 (288)
T ss_pred CHHHHH-HHHHcCCCEEEECCCCHH------------------------HHHHHHHHHHhc-CCCeEEEEECCC-CHHHH
Confidence 344444 445799999988765321 012333334332 347999999999 59999
Q ss_pred HHHHHhCCCEEEEchhhh
Q 012517 410 YRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali 427 (462)
.++.++|+|.+.+++...
T Consensus 258 ~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 258 RAVAETGVDYISSSAPIT 275 (288)
T ss_pred HHHHHcCCCEEEEchhhh
Confidence 999999999999999764
No 270
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=95.60 E-value=0.25 Score=47.10 Aligned_cols=123 Identities=22% Similarity=0.325 Sum_probs=79.4
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
+..+.++.+.+ ....+||.+.+|+. .++++.+++.. . -+.|=...=++ .+-++
T Consensus 21 ~a~~~~~al~~gGi~~iEiT~~t~~a------------~~~I~~l~~~~--------p--~~~vGAGTV~~----~e~a~ 74 (196)
T PF01081_consen 21 DAVPIAEALIEGGIRAIEITLRTPNA------------LEAIEALRKEF--------P--DLLVGAGTVLT----AEQAE 74 (196)
T ss_dssp GHHHHHHHHHHTT--EEEEETTSTTH------------HHHHHHHHHHH--------T--TSEEEEES--S----HHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEecCCccH------------HHHHHHHHHHC--------C--CCeeEEEeccC----HHHHH
Confidence 45555565554 38999999988753 35666666543 1 24444443344 34577
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+.++|++.++--+. .-++++..++. ++|+ .=|+.|+.++.+.+++|
T Consensus 75 ~a~~aGA~FivSP~~----------------------------~~~v~~~~~~~---~i~~--iPG~~TptEi~~A~~~G 121 (196)
T PF01081_consen 75 AAIAAGAQFIVSPGF----------------------------DPEVIEYAREY---GIPY--IPGVMTPTEIMQALEAG 121 (196)
T ss_dssp HHHHHT-SEEEESS------------------------------HHHHHHHHHH---TSEE--EEEESSHHHHHHHHHTT
T ss_pred HHHHcCCCEEECCCC----------------------------CHHHHHHHHHc---CCcc--cCCcCCHHHHHHHHHCC
Confidence 888999998864322 22444444443 4554 45899999999999999
Q ss_pred CCEEEEchhhhhcCCChHHHHHH
Q 012517 417 ATLVQLYTAFAYGGPALIPQIKA 439 (462)
Q Consensus 417 Ad~Vqv~Tali~~GP~~i~~i~~ 439 (462)
|++|-++=+-.+.||.+++.++.
T Consensus 122 ~~~vK~FPA~~~GG~~~ik~l~~ 144 (196)
T PF01081_consen 122 ADIVKLFPAGALGGPSYIKALRG 144 (196)
T ss_dssp -SEEEETTTTTTTHHHHHHHHHT
T ss_pred CCEEEEecchhcCcHHHHHHHhc
Confidence 99999999888866999988864
No 271
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.59 E-value=0.065 Score=57.39 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..+-++.+.++|+|.|.+.-+. + . .+...+.++++++..+ ++|||+ |+|.|.++|
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~-g----------------~-----~~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a 279 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSH-G----------------H-----SIYVIDSIKEIKKTYP-DLDIIA-GNVATAEQA 279 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCC-C----------------c-----HhHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHH
Confidence 34456678889999998874321 1 1 1235688999998865 688888 999999999
Q ss_pred HHHHHhCCCEEEEc
Q 012517 410 YRKIRAGATLVQLY 423 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~ 423 (462)
...+++|||.|.++
T Consensus 280 ~~l~~aGad~i~vg 293 (450)
T TIGR01302 280 KALIDAGADGLRVG 293 (450)
T ss_pred HHHHHhCCCEEEEC
Confidence 99999999999765
No 272
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.55 E-value=0.17 Score=51.03 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=66.0
Q ss_pred CChhhHHHHHHHHHH-cCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC
Q 012517 326 LSKEDLEDIAAVAVA-LRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS 404 (462)
Q Consensus 326 l~~~~~~~ia~~~~~-~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~ 404 (462)
++.+.+..+++.+.+ .|++||.+..||-.-. -|| .+.-.++++.+.+.+++++|||+.=|-.
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~-------------~Ls----~eEr~~~~~~~~~~~~~~~~viagvg~~ 83 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAF-------------LLS----TEEKKQVLEIVAEEAKGKVKLIAQVGSV 83 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCccccc-------------cCC----HHHHHHHHHHHHHHhCCCCCEEecCCCC
Confidence 566789999999999 9999999887763211 111 1223567777888888889988877767
Q ss_pred CHHHHHHHH----HhCCCEEEEchhhhhcCCC
Q 012517 405 SGEDAYRKI----RAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 405 s~~dA~e~i----~aGAd~Vqv~Tali~~GP~ 432 (462)
+.+|+.+.. ++|||.|++...+.+ .|.
T Consensus 84 ~t~~ai~~a~~a~~~Gad~v~v~~P~y~-~~~ 114 (293)
T PRK04147 84 NTAEAQELAKYATELGYDAISAVTPFYY-PFS 114 (293)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcCC-CCC
Confidence 788887764 589999999999854 353
No 273
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.55 E-value=0.15 Score=54.17 Aligned_cols=108 Identities=11% Similarity=0.139 Sum_probs=68.6
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC-----
Q 012517 318 LLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR----- 392 (462)
Q Consensus 318 v~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~----- 392 (462)
.++-+|.. ...++ ..+.+.|+|.|.++--.... .+ + . +..+.-++.++++++.+.
T Consensus 301 ~iIGvStH----s~eEl-~~A~~~gaDYI~lGPIFpT~----TK-~-----~-----~~~p~Gl~~L~~~~~l~~~~~~~ 360 (437)
T PRK12290 301 IRLGLSTH----GYYEL-LRIVQIQPSYIALGHIFPTT----TK-Q-----M-----PSKPQGLVRLALYQKLIDTIPYQ 360 (437)
T ss_pred CEEEEecC----CHHHH-HHHhhcCCCEEEECCccCCC----CC-C-----C-----CCCCCCHHHHHHHHHHhhhcccc
Confidence 45667653 23343 44557899999876321100 00 0 0 011234556666666553
Q ss_pred --CCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHc
Q 012517 393 --GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERD 448 (462)
Q Consensus 393 --~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~ 448 (462)
.++|+++.||| +.+++.+.+++||+.|-+-|+++. -++ +....+++.+.+...
T Consensus 361 ~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVAVVSAI~~-A~D-P~aa~~~l~~~~~~~ 415 (437)
T PRK12290 361 GQTGFPTVAIGGI-DQSNAEQVWQCGVSSLAVVRAITL-AED-PQLVIEFFDQVMAEN 415 (437)
T ss_pred ccCCCCEEEECCc-CHHHHHHHHHcCCCEEEEehHhhc-CCC-HHHHHHHHHHHHhhc
Confidence 16999999999 799999999999999999999963 344 445555666665544
No 274
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.54 E-value=0.15 Score=47.09 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=54.4
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC-CccEE-EecCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG-KIPLI-GCGGI 403 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~-~ipII-g~GGI 403 (462)
.+.+++.++++.+.+.|++||.+.. ++++.+++.+++ ++||+ ++|.-
T Consensus 10 ~d~~~~~~~~~~~~~~gv~gi~~~g-------------------------------~~i~~~~~~~~~~~~~v~~~v~~~ 58 (201)
T cd00945 10 ATLEDIAKLCDEAIEYGFAAVCVNP-------------------------------GYVRLAADALAGSDVPVIVVVGFP 58 (201)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEECH-------------------------------HHHHHHHHHhCCCCCeEEEEecCC
Confidence 3667899999999999999997642 456667777766 68865 45554
Q ss_pred C-------CHHHHHHHHHhCCCEEEEchhhhh
Q 012517 404 S-------SGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 404 ~-------s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+ +.+.+.++.++|||.|.+...+.+
T Consensus 59 ~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~ 90 (201)
T cd00945 59 TGLTTTEVKVAEVEEAIDLGADEIDVVINIGS 90 (201)
T ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEeccHHH
Confidence 4 456777788899999999876643
No 275
>PRK08999 hypothetical protein; Provisional
Probab=95.49 E-value=0.062 Score=54.33 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=58.2
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE
Q 012517 319 LVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 319 ~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII 398 (462)
++-+|.. ...+ +..+.+.|+|.|.++--..... ..+ + .+..++.++++++.+ ++||+
T Consensus 228 ~ig~S~h----~~~~-~~~a~~~~~dyi~~gpvf~t~t----------k~~---~---~~~g~~~~~~~~~~~--~~Pv~ 284 (312)
T PRK08999 228 WVAASCH----DAEE-LARAQRLGVDFAVLSPVQPTAS----------HPG---A---APLGWEGFAALIAGV--PLPVY 284 (312)
T ss_pred EEEEecC----CHHH-HHHHHhcCCCEEEECCCcCCCC----------CCC---C---CCCCHHHHHHHHHhC--CCCEE
Confidence 4555542 2334 3456678999998764321110 001 0 123456778888877 79999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
+-||| +.+++.+.+++||+.|.+.+++
T Consensus 285 AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 285 ALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred EECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 99999 8999999999999999998876
No 276
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.45 E-value=0.4 Score=49.52 Aligned_cols=169 Identities=17% Similarity=0.130 Sum_probs=92.4
Q ss_pred HHHHcccCcEEEEeccC-CCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe-cCCC-------------C
Q 012517 263 VHTLSQYADYLVINVSS-PNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI-APDL-------------S 327 (462)
Q Consensus 263 ~~~l~~~aD~leiNvSs-Pnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi-spdl-------------~ 327 (462)
+.+++ ||++-+.+.- |..+ ..+ .+.-.+.+..|.+++++ ...|+++=+ +++. .
T Consensus 115 a~~~G--AdAVk~lv~~~~d~~--~~~--~~~~~~~l~rv~~ec~~------~giPlllE~l~y~~~~~~~~~~~~a~~~ 182 (340)
T PRK12858 115 IKEAG--ADAVKLLLYYRPDED--DAI--NDRKHAFVERVGAECRA------NDIPFFLEPLTYDGKGSDKKAEEFAKVK 182 (340)
T ss_pred HHHcC--CCEEEEEEEeCCCcc--hHH--HHHHHHHHHHHHHHHHH------cCCceEEEEeccCCCccccccccccccC
Confidence 44444 9998876532 1100 000 12223445556666543 378998863 4332 2
Q ss_pred hhhHHHHHHHHH--HcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccc--hHHHHHHHHHhcCCCccEEE-ecC
Q 012517 328 KEDLEDIAAVAV--ALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSL--SNNILKEMYLLTRGKIPLIG-CGG 402 (462)
Q Consensus 328 ~~~~~~ia~~~~--~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~--al~~v~~i~~~~~~~ipIIg-~GG 402 (462)
.+-+...++.+. +.|+|-+-+--+.... . ..|--.|..++.. +.+..+++.+.+ .+|+|. +||
T Consensus 183 p~~V~~a~r~~~~~elGaDvlKve~p~~~~---------~-veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG 250 (340)
T PRK12858 183 PEKVIKTMEEFSKPRYGVDVLKVEVPVDMK---------F-VEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAG 250 (340)
T ss_pred HHHHHHHHHHHhhhccCCeEEEeeCCCCcc---------c-ccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCC
Confidence 234556666667 4999988764332100 0 0111111222221 235566666666 467554 888
Q ss_pred CCCHHHHHHHH----HhCC--CEEEEchhhhhcCCCh-HHHHHHHHHHHHHHcCCCCHHHh
Q 012517 403 ISSGEDAYRKI----RAGA--TLVQLYTAFAYGGPAL-IPQIKAELAECLERDGFKSIIEA 456 (462)
Q Consensus 403 I~s~~dA~e~i----~aGA--d~Vqv~Tali~~GP~~-i~~i~~~L~~~l~~~G~~si~e~ 456 (462)
+ +.++.++.+ ++|| +.|-+++++...+-.. +..=.+..++||+..|.+++.+|
T Consensus 251 ~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~~g~~~~~~l 310 (340)
T PRK12858 251 V-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNTEGVANITRL 310 (340)
T ss_pred C-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhccccCCCHHHHHHHHHHHhHHHHHHH
Confidence 7 666665554 6899 9999999996543222 22224556778888887777765
No 277
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.44 E-value=0.35 Score=47.50 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCEEEEecCCC-ChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCC
Q 012517 294 LKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDL-SKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLS 372 (462)
Q Consensus 294 l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl-~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlS 372 (462)
+.+++..++...+ ....||.+-+.-.. +.+++.+.++.+.+.|++||.+=..+... ..|.+.
T Consensus 54 ~~e~~~~~~~I~~------~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k-----------~~g~~~ 116 (243)
T cd00377 54 LDEVLAAVRRIAR------AVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPK-----------KCGHHG 116 (243)
T ss_pred HHHHHHHHHHHHh------hccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-----------cccCCC
Confidence 3455555555443 23789999887643 33577888999999999999885443211 234444
Q ss_pred CCcCccc--hHHHHHHHHHhcCC--CccEEEe-----cCCCCHHHHHHH----HHhCCCEEEEchhhhhcCCChHHHHHH
Q 012517 373 GKPLLSL--SNNILKEMYLLTRG--KIPLIGC-----GGISSGEDAYRK----IRAGATLVQLYTAFAYGGPALIPQIKA 439 (462)
Q Consensus 373 G~~l~~~--al~~v~~i~~~~~~--~ipIIg~-----GGI~s~~dA~e~----i~aGAd~Vqv~Tali~~GP~~i~~i~~ 439 (462)
|+.+.+. ..+.|+.+++...+ +++|++= -|=.+-+++++. .++|||+|.+-... .+..++++.+
T Consensus 117 ~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~ 193 (243)
T cd00377 117 GKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE 193 (243)
T ss_pred CCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh
Confidence 4544433 34555555555554 7888876 332345666654 46899999886543 3455555554
Q ss_pred H
Q 012517 440 E 440 (462)
Q Consensus 440 ~ 440 (462)
+
T Consensus 194 ~ 194 (243)
T cd00377 194 A 194 (243)
T ss_pred c
Confidence 4
No 278
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.43 E-value=0.34 Score=48.46 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=77.5
Q ss_pred HHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcC
Q 012517 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 263 ~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~G 342 (462)
++.+.+|+|.|.|- -|..|+ .+||.++-+ .++||.+|=....+.+++...++.+.+.|
T Consensus 100 ~~~vae~~DilQIg--------Ar~~rq----tdLL~a~~~----------tgkpV~lKkGq~~t~~e~~~aaeki~~~G 157 (290)
T PLN03033 100 CEAVGKVADIIQIP--------AFLCRQ----TDLLVAAAK----------TGKIINIKKGQFCAPSVMRNSAEKVRLAG 157 (290)
T ss_pred HHHHHhhCcEEeeC--------cHHHHH----HHHHHHHHc----------cCCeEEeCCCCCCCHHHHHHHHHHHHHcC
Confidence 45566778998872 122232 355655543 47899999999999999999999999999
Q ss_pred CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE----------------ecCCCCH
Q 012517 343 LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG----------------CGGISSG 406 (462)
Q Consensus 343 vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg----------------~GGI~s~ 406 (462)
-+-|+++-+...- |+.-. -..++.+..+++ + .+|||. .||...+
T Consensus 158 N~~viLcERG~tF--------------gy~~l---v~D~r~ip~mk~-~--~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G 217 (290)
T PLN03033 158 NPNVMVCERGTMF--------------GYNDL---IVDPRNLEWMRE-A--NCPVVADITHSLQQPAGKKLDGGGVASGG 217 (290)
T ss_pred CCcEEEEeCCCCc--------------CCCCc---ccchhhhHHHHh-c--CCCEEEeCCccccCCCcccccccCCCCCC
Confidence 9999998543210 11100 012334444443 3 577774 2333333
Q ss_pred ------HHHHHHHHhCCCEEEEch
Q 012517 407 ------EDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 407 ------~dA~e~i~aGAd~Vqv~T 424 (462)
.-|+..+.+|||.+++=+
T Consensus 218 ~Re~V~~larAAvA~GaDGlfiEv 241 (290)
T PLN03033 218 LRELIPCIARTAVAVGVDGIFMEV 241 (290)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEe
Confidence 356778889999998865
No 279
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.37 E-value=2.8 Score=43.24 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=66.3
Q ss_pred CCCCEEEEecCCCChhhHHHHHHHHHHcCCcE--EEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhc
Q 012517 314 GPPPLLVKIAPDLSKEDLEDIAAVAVALRLDG--LIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLT 391 (462)
Q Consensus 314 ~~~Pv~vKispdl~~~~~~~ia~~~~~~Gvdg--IivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~ 391 (462)
.++||++|... -+.+|+...++.+.+.|.+. |++--.+...| .|.....+..+..+++.+
T Consensus 132 ~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP-----------------~~~~~~nL~~I~~Lk~~f 193 (329)
T TIGR03569 132 FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYP-----------------APFEDVNLNAMDTLKEAF 193 (329)
T ss_pred cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCC-----------------CCcccCCHHHHHHHHHHh
Confidence 37899999987 47789999999999999862 44422221111 112335788999999988
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 392 RGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 392 ~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
++||..++=-....-+...+.+||++|...=.+
T Consensus 194 --~~pVG~SdHt~G~~~~~aAvalGA~iIEkH~tl 226 (329)
T TIGR03569 194 --DLPVGYSDHTLGIEAPIAAVALGATVIEKHFTL 226 (329)
T ss_pred --CCCEEECCCCccHHHHHHHHHcCCCEEEeCCCh
Confidence 589888766555667778888999988766444
No 280
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=95.30 E-value=0.44 Score=49.53 Aligned_cols=126 Identities=14% Similarity=0.034 Sum_probs=87.8
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
++.+.+++..+ .++.+-+-+.-+. ..+.-.+.+++|+++. +.+.+|+|-....++.++..++++
T Consensus 146 ~~~~~a~~~~~~Gf~~~Kik~~~~~--------~~~~di~~i~~vR~~~-------G~~~~l~vDan~~~~~~~A~~~~~ 210 (368)
T cd03329 146 AYADFAEECKALGYRAIKLHPWGPG--------VVRRDLKACLAVREAV-------GPDMRLMHDGAHWYSRADALRLGR 210 (368)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCch--------hHHHHHHHHHHHHHHh-------CCCCeEEEECCCCcCHHHHHHHHH
Confidence 66666665543 5898888432111 0233456777777765 457889988877788888889999
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC-HHHHHHHHHh
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS-GEDAYRKIRA 415 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s-~~dA~e~i~a 415 (462)
.+.+.++..+- . |+.+...+..+++++.+ .+||.+.--+.+ .+++.++++.
T Consensus 211 ~l~~~~l~~iE-------e-------------------P~~~~d~~~~~~l~~~~--~ipIa~~E~~~~~~~~~~~~i~~ 262 (368)
T cd03329 211 ALEELGFFWYE-------D-------------------PLREASISSYRWLAEKL--DIPILGTEHSRGALESRADWVLA 262 (368)
T ss_pred HhhhcCCCeEe-------C-------------------CCCchhHHHHHHHHhcC--CCCEEccCcccCcHHHHHHHHHh
Confidence 99888765442 0 11222345667888887 699988878888 9999999998
Q ss_pred C-CCEEEEchhh
Q 012517 416 G-ATLVQLYTAF 426 (462)
Q Consensus 416 G-Ad~Vqv~Tal 426 (462)
| +|.||+--..
T Consensus 263 ~a~d~v~~d~~~ 274 (368)
T cd03329 263 GATDFLRADVNL 274 (368)
T ss_pred CCCCEEecCccc
Confidence 7 8899886554
No 281
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.28 E-value=0.17 Score=50.65 Aligned_cols=70 Identities=26% Similarity=0.288 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHH
Q 012517 331 LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAY 410 (462)
Q Consensus 331 ~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~ 410 (462)
..+..+ +.+.|+|.|-+.|-... . ..+.++.+++..+ ++|++++||| +.+.+.
T Consensus 193 ~eea~~-A~~~gaD~I~ld~~~p~---------------~---------l~~~~~~~~~~~~-~i~i~AsGGI-~~~ni~ 245 (272)
T cd01573 193 LEEALA-AAEAGADILQLDKFSPE---------------E---------LAELVPKLRSLAP-PVLLAAAGGI-NIENAA 245 (272)
T ss_pred HHHHHH-HHHcCCCEEEECCCCHH---------------H---------HHHHHHHHhccCC-CceEEEECCC-CHHHHH
Confidence 344433 45799999887764310 0 1133444444332 6999999999 799999
Q ss_pred HHHHhCCCEEEEchhhhh
Q 012517 411 RKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 411 e~i~aGAd~Vqv~Tali~ 428 (462)
++.++|+|.| +.+++.+
T Consensus 246 ~~~~~Gvd~I-~vsai~~ 262 (272)
T cd01573 246 AYAAAGADIL-VTSAPYY 262 (272)
T ss_pred HHHHcCCcEE-EEChhhc
Confidence 9999999999 5555533
No 282
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.28 E-value=0.71 Score=45.81 Aligned_cols=120 Identities=19% Similarity=0.144 Sum_probs=79.3
Q ss_pred HHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcC
Q 012517 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 263 ~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~G 342 (462)
++.+.+|+|.|.|- -|..|+. +||+++-+ .++||++|=....+.+|+...++.+.+.|
T Consensus 94 ~~~v~~~~DilQIg--------Arn~rn~----~LL~a~g~----------t~kpV~lKrG~~~t~~e~~~aaeyi~~~G 151 (264)
T PRK05198 94 AAPVAEVVDVLQIP--------AFLCRQT----DLLVAAAK----------TGKVVNIKKGQFLAPWDMKNVVDKVREAG 151 (264)
T ss_pred HHHHHhhCcEEEEC--------chhcchH----HHHHHHhc----------cCCeEEecCCCcCCHHHHHHHHHHHHHcC
Confidence 45556679999883 2333432 56666643 47899999998889899999999999999
Q ss_pred CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe---------------cCCCC--
Q 012517 343 LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC---------------GGISS-- 405 (462)
Q Consensus 343 vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~---------------GGI~s-- 405 (462)
-.-|+++-+...- |+.- .-..++.+..+++ . .+|||.- ||..+
T Consensus 152 n~~vilcERG~tf--------------~y~r---~~~D~~~vp~~k~-~--~lPVi~DpSHsvq~pg~~~~~s~G~r~~v 211 (264)
T PRK05198 152 NDKIILCERGTSF--------------GYNN---LVVDMRGLPIMRE-T--GAPVIFDATHSVQLPGGQGGSSGGQREFV 211 (264)
T ss_pred CCeEEEEeCCCCc--------------CCCC---eeechhhhHHHhh-C--CCCEEEeCCccccCCCCCCCCCCCcHHHH
Confidence 9999998543210 1111 0113344555555 3 3788852 44333
Q ss_pred HHHHHHHHHhCCCEEEEch
Q 012517 406 GEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 406 ~~dA~e~i~aGAd~Vqv~T 424 (462)
+.-|+..+.+|||.+++=+
T Consensus 212 ~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 212 PVLARAAVAVGVAGLFIET 230 (264)
T ss_pred HHHHHHHHHcCCCEEEEEe
Confidence 2356678889999998865
No 283
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.27 E-value=0.29 Score=47.07 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=61.2
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE
Q 012517 319 LVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 319 ~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII 398 (462)
++-+|.. ...+ +..+.+.|+|.+.++--..... + .+.. .+..++.++++.+... ++||+
T Consensus 104 ~iG~S~H----~~~e-~~~A~~~gaDYi~lgpvf~T~t----K------~~~~-----~~~G~~~l~~~~~~~~-~~PV~ 162 (211)
T PRK03512 104 RLGVSTH----DDME-IDVALAARPSYIALGHVFPTQT----K------QMPS-----APQGLAQLARHVERLA-DYPTV 162 (211)
T ss_pred EEEEeCC----CHHH-HHHHhhcCCCEEEECCccCCCC----C------CCCC-----CCCCHHHHHHHHHhcC-CCCEE
Confidence 5556653 3334 3455678999998874321110 0 0100 1123455566655532 69999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHH
Q 012517 399 GCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 437 (462)
Q Consensus 399 g~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i 437 (462)
+.|||+ .+++.+.+++||+.|-+.++++. -++....+
T Consensus 163 AiGGI~-~~ni~~l~~~Ga~GiAvisai~~-~~d~~~~~ 199 (211)
T PRK03512 163 AIGGIS-LERAPAVLATGVGSIAVVSAITQ-AADWRAAT 199 (211)
T ss_pred EECCCC-HHHHHHHHHcCCCEEEEhhHhhC-CCCHHHHH
Confidence 999998 99999999999999999999964 45544333
No 284
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.25 E-value=0.31 Score=46.63 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHHccc-CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChh
Q 012517 251 TSEDAAADYVQGVHTLSQY-ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKE 329 (462)
Q Consensus 251 ~t~~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~ 329 (462)
.|+++.+.+.+-++.+.+. +|.+++-+..|+.. -|.+.+.+++++. ...|+..--+.|...+
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~-----iD~~~~~~Li~~a------------~~~~~tFHRAfD~~~d 128 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDGE-----IDEEALEELIEAA------------GGMPVTFHRAFDEVPD 128 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTSS-----B-HHHHHHHHHHH------------TTSEEEE-GGGGGSST
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCC-----cCHHHHHHHHHhc------------CCCeEEEeCcHHHhCC
Confidence 3677777777777777664 99999887655432 2445555555553 2678888888886654
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
..+-.+.+.+.|++.|--++.... -...++.++++.+..++++.|+..|||+ .+.+
T Consensus 129 -~~~al~~L~~lG~~rVLTSGg~~~----------------------a~~g~~~L~~lv~~a~~~i~Im~GgGv~-~~nv 184 (201)
T PF03932_consen 129 -PEEALEQLIELGFDRVLTSGGAPT----------------------ALEGIENLKELVEQAKGRIEIMPGGGVR-AENV 184 (201)
T ss_dssp -HHHHHHHHHHHT-SEEEESTTSSS----------------------TTTCHHHHHHHHHHHTTSSEEEEESS---TTTH
T ss_pred -HHHHHHHHHhcCCCEEECCCCCCC----------------------HHHHHHHHHHHHHHcCCCcEEEecCCCC-HHHH
Confidence 455667788889999865543210 0113566777777776789999999997 5667
Q ss_pred HHHHH-hCCCEEEE
Q 012517 410 YRKIR-AGATLVQL 422 (462)
Q Consensus 410 ~e~i~-aGAd~Vqv 422 (462)
.+.++ +|+.-+-.
T Consensus 185 ~~l~~~tg~~~~H~ 198 (201)
T PF03932_consen 185 PELVEETGVREIHG 198 (201)
T ss_dssp HHHHHHHT-SEEEE
T ss_pred HHHHHhhCCeEEee
Confidence 77776 88876644
No 285
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.22 E-value=0.4 Score=46.25 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=80.5
Q ss_pred HHHHHHHHHccc-CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQY-ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~~-aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
+....++.+.++ .+.+||-+.+|+. .+.++.+++.. .+.-|.+ -.=++. +-++
T Consensus 28 ~a~~i~~al~~~Gi~~iEitl~~~~~------------~~~I~~l~~~~--------p~~~IGA--GTVl~~----~~a~ 81 (212)
T PRK05718 28 DAVPLAKALVAGGLPVLEVTLRTPAA------------LEAIRLIAKEV--------PEALIGA--GTVLNP----EQLA 81 (212)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCccH------------HHHHHHHHHHC--------CCCEEEE--eeccCH----HHHH
Confidence 677777777774 9999999887753 24555555431 1222222 111232 4578
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+.++|++.++.-+.. -+.++..++. .+|+ .=|+.|+.++.+.+++|
T Consensus 82 ~a~~aGA~FivsP~~~----------------------------~~vi~~a~~~---~i~~--iPG~~TptEi~~a~~~G 128 (212)
T PRK05718 82 QAIEAGAQFIVSPGLT----------------------------PPLLKAAQEG---PIPL--IPGVSTPSELMLGMELG 128 (212)
T ss_pred HHHHcCCCEEECCCCC----------------------------HHHHHHHHHc---CCCE--eCCCCCHHHHHHHHHCC
Confidence 8899999988743321 2444444442 3444 45789999999999999
Q ss_pred CCEEEEchhhhhcCCChHHHHH
Q 012517 417 ATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 417 Ad~Vqv~Tali~~GP~~i~~i~ 438 (462)
|+.|-++=+-...||.+++.++
T Consensus 129 a~~vKlFPa~~~gg~~~lk~l~ 150 (212)
T PRK05718 129 LRTFKFFPAEASGGVKMLKALA 150 (212)
T ss_pred CCEEEEccchhccCHHHHHHHh
Confidence 9999998665445799888886
No 286
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=95.18 E-value=0.58 Score=47.13 Aligned_cols=166 Identities=17% Similarity=0.180 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE-----------E
Q 012517 253 EDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV-----------K 321 (462)
Q Consensus 253 ~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v-----------K 321 (462)
||.+.+.-+..-.+ .||.|+.|-.+-|+.-+.+.+-.+.+.+|-++-.+..++.+..-+.++|.+| =
T Consensus 52 Pd~I~~IH~aY~eA--GADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~ 129 (311)
T COG0646 52 PDVIEAIHRAYIEA--GADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLS 129 (311)
T ss_pred cHHHHHHHHHHHhc--cCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCC
Confidence 45444444433333 4999999977767765554332333334333322222222110011145555 1
Q ss_pred ecC--CCChhh----HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 322 IAP--DLSKED----LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 322 isp--dl~~~~----~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
++| +++-++ ..+-++.+.+.|+|++.+ -|..+-.. -..++..++++.+..+-++
T Consensus 130 ~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLi-ET~~D~l~-------------------~KaA~~a~~~~~~~~~~~L 189 (311)
T COG0646 130 ISPDFAVTFDELVEAYREQVEGLIDGGADLILI-ETIFDTLN-------------------AKAAVFAAREVFEELGVRL 189 (311)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHhCCCcEEEE-ehhccHHH-------------------HHHHHHHHHHHHHhcCCcc
Confidence 334 244343 345667788999998864 45432100 0124556666666666679
Q ss_pred cEEEecCCC---------CHHHHHHHHH-hCCCEEEEchhhhhcCCChHHHHHHHHHH
Q 012517 396 PLIGCGGIS---------SGEDAYRKIR-AGATLVQLYTAFAYGGPALIPQIKAELAE 443 (462)
Q Consensus 396 pIIg~GGI~---------s~~dA~e~i~-aGAd~Vqv~Tali~~GP~~i~~i~~~L~~ 443 (462)
|||.+|=|. +.++++..++ +|++.|.+==++ ||+......+++..
T Consensus 190 Pv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~---Gp~~m~~~l~~ls~ 244 (311)
T COG0646 190 PVMISGTITDSGRTLSGQTIEAFLNSLEHLGPDAVGLNCAL---GPDEMRPHLRELSR 244 (311)
T ss_pred cEEEEEEEecCceecCCCcHHHHHHHhhccCCcEEeecccc---CHHHHHHHHHHHHh
Confidence 999998765 3566666665 899999988877 88877777776654
No 287
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.16 E-value=0.93 Score=45.03 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=59.9
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ .+|++.+|=++ |.-.....+.-.++++.+++.. ..+.||++-++..- .++..++++
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~Gst----GE~~~ls~~Er~~l~~~~~~~~-------~~~~~vi~gv~~~~-~~~~i~~a~ 86 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTT----GEAPTLTDEERKEVIEAVVEAV-------AGRVPVIAGVGANS-TREAIELAR 86 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCC----cccccCCHHHHHHHHHHHHHHh-------CCCCeEEEecCCcc-HHHHHHHHH
Confidence 55555555544 59999988653 3333444566677787777765 24789999998753 357889999
Q ss_pred HHHHcCCcEEEEecCCc
Q 012517 337 VAVALRLDGLIISNTTI 353 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~ 353 (462)
.+.+.|+|+|.+....+
T Consensus 87 ~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 87 HAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHcCCCEEEECCCcC
Confidence 99999999999986544
No 288
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=95.13 E-value=1.4 Score=44.60 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecC--CCCHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGG--ISSGE 407 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GG--I~s~~ 407 (462)
+.++..+.+ +.|+|.|-++..+. .|-+.+. ..++.++.++++++.++ ++|++.-|| |. .+
T Consensus 155 ~peea~~f~-~tgvD~LAv~iG~v--------------HG~y~t~-~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e 216 (293)
T PRK07315 155 PIEDAKAMV-ETGIDFLAAGIGNI--------------HGPYPEN-WEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DD 216 (293)
T ss_pred CHHHHHHHH-HcCCCEEeeccccc--------------cccCCCC-CCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HH
Confidence 444544444 78999998874331 1222221 01356789999999984 499999999 86 68
Q ss_pred HHHHHHHhCCCEEEEchhhhh
Q 012517 408 DAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 408 dA~e~i~aGAd~Vqv~Tali~ 428 (462)
++.+.++.|++-|-++|.+..
T Consensus 217 ~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 217 QIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHHHHHcCCCEEEEccHHHH
Confidence 899999999999999999964
No 289
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.13 E-value=0.26 Score=49.49 Aligned_cols=63 Identities=22% Similarity=0.188 Sum_probs=48.6
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
+..+.+.|+|.|.+-|- ..+.++++.+..+..+||.++||| +.+.+.++++
T Consensus 201 a~~A~~~gaDyI~lD~~----------------------------~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~ 251 (277)
T PRK08072 201 VREAVAAGADIIMFDNR----------------------------TPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG 251 (277)
T ss_pred HHHHHHcCCCEEEECCC----------------------------CHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH
Confidence 34456799999976321 235667777766546889999999 6999999999
Q ss_pred hCCCEEEEchhh
Q 012517 415 AGATLVQLYTAF 426 (462)
Q Consensus 415 aGAd~Vqv~Tal 426 (462)
+|+|.|.++.-.
T Consensus 252 ~Gvd~IAvg~l~ 263 (277)
T PRK08072 252 TGVDYISLGFLT 263 (277)
T ss_pred cCCCEEEEChhh
Confidence 999999888744
No 290
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.08 E-value=0.11 Score=52.16 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=47.9
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
+..+.+.|+|.|-+.|- +.+.++++.+..++++||.++||| +.+.+.++.+
T Consensus 202 a~eA~~~gaD~I~LD~~----------------------------~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~ 252 (277)
T PRK05742 202 LRQALAAGADIVMLDEL----------------------------SLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAE 252 (277)
T ss_pred HHHHHHcCCCEEEECCC----------------------------CHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHH
Confidence 44556889999966442 234455555555458999999999 5999999999
Q ss_pred hCCCEEEEchhh
Q 012517 415 AGATLVQLYTAF 426 (462)
Q Consensus 415 aGAd~Vqv~Tal 426 (462)
+|+|.+.+++..
T Consensus 253 tGvD~Isvg~lt 264 (277)
T PRK05742 253 TGVDYISIGAMT 264 (277)
T ss_pred cCCCEEEEChhh
Confidence 999999988854
No 291
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.06 E-value=0.087 Score=56.81 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHH
Q 012517 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGED 408 (462)
Q Consensus 329 ~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~d 408 (462)
++..+.++.+.+.|+|.|++- ++.+++ ....+.++++++..+ ++|||+ |.+.|.++
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D-~a~g~~---------------------~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~ 279 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVID-TAHGHQ---------------------VKMISAIKAVRALDL-GVPIVA-GNVVSAEG 279 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEe-CCCCCc---------------------HHHHHHHHHHHHHCC-CCeEEE-eccCCHHH
Confidence 367789999999999998764 322221 235688999999875 799998 77999999
Q ss_pred HHHHHHhCCCEEEE
Q 012517 409 AYRKIRAGATLVQL 422 (462)
Q Consensus 409 A~e~i~aGAd~Vqv 422 (462)
+.+.+++|||.|-+
T Consensus 280 ~~~l~~~G~d~i~v 293 (475)
T TIGR01303 280 VRDLLEAGANIIKV 293 (475)
T ss_pred HHHHHHhCCCEEEE
Confidence 99999999999983
No 292
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.06 E-value=0.11 Score=56.45 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..+.++.+.++|+|.|++.++ .+. | ...++.|+++++.++++ -.|+.|-|.++++|
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a-~g~----------------~-----~~~~~~i~~ir~~~~~~-~~V~aGnV~t~e~a 298 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSS-EGY----------------S-----EWQKRTLDWIREKYGDS-VKVGAGNVVDREGF 298 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCc-ccc----------------c-----HHHHHHHHHHHHhCCCC-ceEEeccccCHHHH
Confidence 5678899999999999998732 111 1 12468899999988522 46788999999999
Q ss_pred HHHHHhCCCEEEE
Q 012517 410 YRKIRAGATLVQL 422 (462)
Q Consensus 410 ~e~i~aGAd~Vqv 422 (462)
.+.+++|||.|-+
T Consensus 299 ~~li~aGAd~I~v 311 (502)
T PRK07107 299 RYLAEAGADFVKV 311 (502)
T ss_pred HHHHHcCCCEEEE
Confidence 9999999999877
No 293
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.04 E-value=5.6 Score=42.90 Aligned_cols=220 Identities=14% Similarity=0.124 Sum_probs=125.5
Q ss_pred HHHHHHcCCccEEEecc-cccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCC
Q 012517 151 AVEGLLGLGFGFVEVGS-VTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPND 229 (462)
Q Consensus 151 ~~~~l~~lGfG~Vevgt-vT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 229 (462)
....+.+.||-.+|++. .|. =-+++|.++.-...++.+++..+....
T Consensus 40 ia~~ld~~G~~siE~wGGAtf--------------------d~~~rfl~edpwerlr~~r~~~~nt~l------------ 87 (468)
T PRK12581 40 VLTILDKIGYYSLECWGGATF--------------------DACIRFLNEDPWERLRTLKKGLPNTRL------------ 87 (468)
T ss_pred HHHHHHhcCCCEEEecCCcch--------------------hhhhcccCCCHHHHHHHHHHhCCCCce------------
Confidence 45567788999999962 111 023556666555555556554332110
Q ss_pred cccCCCCCCCceEEEEecCCCCCH-HHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhh
Q 012517 230 EVKAGGKAGPGILGVNIGKNKTSE-DAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEM 308 (462)
Q Consensus 230 ~~p~~~~~~~~~lgvnig~nk~t~-~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~ 308 (462)
.--..|.|+-+...-+ +-++.|++.+.+- ..|.+-+ +.+.| +.+.+...++++++.=.
T Consensus 88 --------qmLlRG~n~vgy~~ypddvv~~fv~~a~~~--Gidi~Ri-fd~ln--------d~~n~~~ai~~ak~~G~-- 146 (468)
T PRK12581 88 --------QMLLRGQNLLGYRHYADDIVDKFISLSAQN--GIDVFRI-FDALN--------DPRNIQQALRAVKKTGK-- 146 (468)
T ss_pred --------eeeeccccccCccCCcchHHHHHHHHHHHC--CCCEEEE-cccCC--------CHHHHHHHHHHHHHcCC--
Confidence 0012355642222223 4455665554443 3777665 23322 34556666666654310
Q ss_pred ccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHH
Q 012517 309 QWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMY 388 (462)
Q Consensus 309 ~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~ 388 (462)
....-+..-.+|..+.+-..++++.+.+.|+|.|.+..|. |+.- .....++++.++
T Consensus 147 ----~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDta-----------------G~l~---P~~v~~Lv~alk 202 (468)
T PRK12581 147 ----EAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMA-----------------GILT---PKAAKELVSGIK 202 (468)
T ss_pred ----EEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCC-----------------CCcC---HHHHHHHHHHHH
Confidence 0113455567887777788999999999999999887664 1111 123567788888
Q ss_pred HhcCCCccEEEecCCCC---HHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 389 LLTRGKIPLIGCGGISS---GEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 389 ~~~~~~ipIIg~GGI~s---~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
+.. ++||-.=+==+. ..-+++.+++||+.|...-+=+- ++.-+--.+.+...|+..|+.
T Consensus 203 ~~~--~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g--~gagN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 203 AMT--NLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFS--EGTSQPATESMYLALKEAGYD 264 (468)
T ss_pred hcc--CCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccC--CCcCChhHHHHHHHHHhcCCC
Confidence 755 577654333322 34566778899999887765443 333344445555666666665
No 294
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=95.00 E-value=0.43 Score=47.83 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=53.8
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
++||+-|+.-+. ..=++.+.+.|+|.|..|... | | +-+.+..+++.+ +
T Consensus 67 ~iPVig~~kigh-----~~Ea~~L~~~GvDiIDeTe~l--r----------------------P-ade~~~~~K~~f--~ 114 (287)
T TIGR00343 67 SIPVMAKVRIGH-----FVEAQILEALGVDYIDESEVL--T----------------------P-ADWTFHIDKKKF--K 114 (287)
T ss_pred CCCEEEEeeccH-----HHHHHHHHHcCCCEEEccCCC--C----------------------c-HHHHHHHHHHHc--C
Confidence 799999988653 344788899999998533211 1 1 346667777766 4
Q ss_pred ccEEEecCCCCHHHHHHHHHhCCCEEE
Q 012517 395 IPLIGCGGISSGEDAYRKIRAGATLVQ 421 (462)
Q Consensus 395 ipIIg~GGI~s~~dA~e~i~aGAd~Vq 421 (462)
+|+ +.|+.|-++|+..+..|||+|.
T Consensus 115 vpf--mad~~~l~EAlrai~~GadmI~ 139 (287)
T TIGR00343 115 VPF--VCGARDLGEALRRINEGAAMIR 139 (287)
T ss_pred CCE--EccCCCHHHHHHHHHCCCCEEe
Confidence 555 5699999999999999999874
No 295
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=95.00 E-value=2.3 Score=41.02 Aligned_cols=133 Identities=20% Similarity=0.197 Sum_probs=86.3
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLII 348 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIiv 348 (462)
.||++.|--..| ..-+-++++.+. + .+.-+.+-+-... ++.+-++.+.+.|+|-+++
T Consensus 80 GAd~~tV~g~A~-------------~~TI~~~i~~A~-~------~~~~v~iDl~~~~---~~~~~~~~l~~~gvd~~~~ 136 (217)
T COG0269 80 GADWVTVLGAAD-------------DATIKKAIKVAK-E------YGKEVQIDLIGVW---DPEQRAKWLKELGVDQVIL 136 (217)
T ss_pred CCCEEEEEecCC-------------HHHHHHHHHHHH-H------cCCeEEEEeecCC---CHHHHHHHHHHhCCCEEEE
Confidence 399998754332 223444444443 2 2567777775544 4667788888899999998
Q ss_pred ecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 349 SNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 349 sNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+-. ++. +.-|.+ .+.+.+.++++..+..+.|-..|||+ ++++.+++..|++.|-+++++.
T Consensus 137 H~g---~D~---------q~~G~~------~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~~~~~~ivIvGraIt- 196 (217)
T COG0269 137 HRG---RDA---------QAAGKS------WGEDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFKGIGADIVIVGRAIT- 196 (217)
T ss_pred Eec---ccH---------hhcCCC------ccHHHHHHHHHhhccCceEEEecCCC-HHHHHHHhcCCCCEEEECchhc-
Confidence 732 211 111222 23566778888775447899999996 9999999999999999999995
Q ss_pred cCCChHHHHHHHHHHHH
Q 012517 429 GGPALIPQIKAELAECL 445 (462)
Q Consensus 429 ~GP~~i~~i~~~L~~~l 445 (462)
+-.=+.+..+.+.+.|
T Consensus 197 -~a~dp~~~a~~~~~~i 212 (217)
T COG0269 197 -GAKDPAEAARKFKEEI 212 (217)
T ss_pred -CCCCHHHHHHHHHHHH
Confidence 2332334444444444
No 296
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.98 E-value=0.29 Score=48.67 Aligned_cols=87 Identities=21% Similarity=0.319 Sum_probs=63.3
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+.++++.+.+.|++||.+..|+-.-. -+| .+.-.++++.+++.+++++|||+.-|=.+
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~-------------~ls----~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 77 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAP-------------TLT----DEERKEVIEAVVEAVAGRVPVIAGVGANS 77 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccc-------------cCC----HHHHHHHHHHHHHHhCCCCeEEEecCCcc
Confidence 5667899999999999999998776653211 111 12235777888888877899877666667
Q ss_pred HHHHHHHH----HhCCCEEEEchhhhhc
Q 012517 406 GEDAYRKI----RAGATLVQLYTAFAYG 429 (462)
Q Consensus 406 ~~dA~e~i----~aGAd~Vqv~Tali~~ 429 (462)
-+++.+.. ++|||.|++.....+.
T Consensus 78 ~~~~i~~a~~a~~~Gad~v~v~pP~y~~ 105 (281)
T cd00408 78 TREAIELARHAEEAGADGVLVVPPYYNK 105 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence 77776655 4799999999988553
No 297
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.90 E-value=0.28 Score=50.30 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=53.8
Q ss_pred cCCCChhhHHHHHHHHHH--cCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe
Q 012517 323 APDLSKEDLEDIAAVAVA--LRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC 400 (462)
Q Consensus 323 spdl~~~~~~~ia~~~~~--~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~ 400 (462)
+-...+++.+.+. .+.+ .|+|.|++- +.. |.| ...++.|+++++.++ +++ |..
T Consensus 102 avG~~~~d~er~~-~L~~~~~g~D~iviD-~Ah----------------Ghs-----~~~i~~ik~ik~~~P-~~~-vIa 156 (346)
T PRK05096 102 STGTSDADFEKTK-QILALSPALNFICID-VAN----------------GYS-----EHFVQFVAKAREAWP-DKT-ICA 156 (346)
T ss_pred EecCCHHHHHHHH-HHHhcCCCCCEEEEE-CCC----------------CcH-----HHHHHHHHHHHHhCC-CCc-EEE
Confidence 5455555655544 4554 699998764 211 222 235788999999886 566 557
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEc
Q 012517 401 GGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 401 GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
|.|-|++.+.+.+++|||.|-++
T Consensus 157 GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 157 GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred ecccCHHHHHHHHHcCCCEEEEc
Confidence 89999999999999999999743
No 298
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.90 E-value=5.8 Score=42.64 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe----cCCCChh
Q 012517 254 DAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI----APDLSKE 329 (462)
Q Consensus 254 ~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi----spdl~~~ 329 (462)
+..+++++.+...+ .|.+.+=.++ | +. +.+.+.++.+++. ..-+-+-+ +|-.+.+
T Consensus 96 dvv~~~v~~A~~~G--vd~irif~~l-n-----d~---~n~~~~v~~ak~~----------G~~v~~~i~~t~~p~~~~~ 154 (448)
T PRK12331 96 DVVESFVQKSVENG--IDIIRIFDAL-N-----DV---RNLETAVKATKKA----------GGHAQVAISYTTSPVHTID 154 (448)
T ss_pred hhHHHHHHHHHHCC--CCEEEEEEec-C-----cH---HHHHHHHHHHHHc----------CCeEEEEEEeecCCCCCHH
Confidence 34556766665554 8876664432 1 11 2344444444432 22222222 3445567
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe----cCCCC
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC----GGISS 405 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~----GGI~s 405 (462)
.+.++++.+.+.|+|.|.+..|. |+.- .....++++.+++.+ ++||-.= -|..
T Consensus 155 ~~~~~a~~l~~~Gad~I~i~Dt~-----------------G~l~---P~~v~~lv~alk~~~--~~pi~~H~Hnt~GlA- 211 (448)
T PRK12331 155 YFVKLAKEMQEMGADSICIKDMA-----------------GILT---PYVAYELVKRIKEAV--TVPLEVHTHATSGIA- 211 (448)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCC-----------------CCCC---HHHHHHHHHHHHHhc--CCeEEEEecCCCCcH-
Confidence 78999999999999999888664 1111 123567888899888 4776542 2322
Q ss_pred HHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 406 GEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 406 ~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
..-+++++++||+.|...-+=+- ++.-+--.+.+...|+..|+.
T Consensus 212 ~AN~laAieaGad~vD~sv~glg--~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 212 EMTYLKAIEAGADIIDTAISPFA--GGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred HHHHHHHHHcCCCEEEeeccccC--CCcCCHhHHHHHHHHHhcCCC
Confidence 45677788999999887765433 332233334455555555554
No 299
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=94.90 E-value=0.32 Score=50.35 Aligned_cols=98 Identities=24% Similarity=0.287 Sum_probs=55.2
Q ss_pred CChhhHHHH-------HHHHHHcCCcEEEEecCCccC-CCCCCC---CCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 326 LSKEDLEDI-------AAVAVALRLDGLIISNTTISR-PDPVSK---NPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 326 l~~~~~~~i-------a~~~~~~GvdgIivsNTt~~r-~~~~~~---~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
++.+|+.++ |+.+.++|.|||-++..- +. ....-. +.-..++|| |=.--....+++++.+|+.++.+
T Consensus 127 mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~aIR~~vG~d 204 (353)
T cd02930 127 LSEEEIEQTIEDFARCAALAREAGYDGVEIMGSE-GYLINQFLAPRTNKRTDEWGG-SFENRMRFPVEIVRAVRAAVGED 204 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc-chHHHHhcCCccCCCcCccCC-CHHHHhHHHHHHHHHHHHHcCCC
Confidence 555555444 445678999999885321 00 000000 011225565 21111234678999999999777
Q ss_pred ccEE----Ee----cCCCCHHHHHHHH----HhCCCEEEEchhh
Q 012517 395 IPLI----GC----GGISSGEDAYRKI----RAGATLVQLYTAF 426 (462)
Q Consensus 395 ipII----g~----GGI~s~~dA~e~i----~aGAd~Vqv~Tal 426 (462)
++|. .. || .+.+++.+++ ++|+|++.+..++
T Consensus 205 ~~v~iRi~~~D~~~~g-~~~~e~~~i~~~Le~~G~d~i~vs~g~ 247 (353)
T cd02930 205 FIIIYRLSMLDLVEGG-STWEEVVALAKALEAAGADILNTGIGW 247 (353)
T ss_pred ceEEEEecccccCCCC-CCHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 7764 12 44 4667665544 3799999996554
No 300
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=94.88 E-value=0.2 Score=51.48 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=43.8
Q ss_pred chHHHHHHHHH-----hc-CCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChH
Q 012517 379 LSNNILKEMYL-----LT-RGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALI 434 (462)
Q Consensus 379 ~al~~v~~i~~-----~~-~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i 434 (462)
..++...++.. .+ +.++.+|+-+||.+++|+..+..+||++|-||++||. .++.-
T Consensus 267 vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr-~~dp~ 327 (338)
T PLN02460 267 VDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVK-QDDPG 327 (338)
T ss_pred ECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhC-CCCHH
Confidence 34555566666 34 3467789999999999999999999999999999986 46643
No 301
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.86 E-value=0.43 Score=49.43 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=69.1
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEe-cCCc-c-CCCCC----CCCC---ccc------ccCC--CCCCcC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIIS-NTTI-S-RPDPV----SKNP---VAK------ETGG--LSGKPL 376 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivs-NTt~-~-r~~~~----~~~~---~~~------~~GG--lSG~~l 376 (462)
+.|+|+=+-..-+.+.+.++.+.++++|+++|+++ |+.. + |..+. ..+. ... ..++ +.+...
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 35888766544455678899999999999999997 3321 1 11000 0000 000 0000 000011
Q ss_pred -ccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 012517 377 -LSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 377 -~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~T 424 (462)
.....+.++++++.+ ++|||.- ||.+.+||....++|+|.|.+.-
T Consensus 197 ~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 197 DPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 124678899999988 6898877 88999999999999999998864
No 302
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.86 E-value=0.23 Score=49.00 Aligned_cols=74 Identities=22% Similarity=0.121 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++|...++.|+++|.|- |-. ...|| +++.++++++.+ ++||+.-+.|.++.++
T Consensus 62 d~~~~A~~y~~~GA~aISVl-Te~------------~~F~G---------s~~~l~~v~~~v--~~PvL~KDFIid~~QI 117 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVL-TDQ------------SYFGG---------SLEDLKSVSSEL--KIPVLRKDFILDEIQI 117 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEE-cCC------------CcCCC---------CHHHHHHHHHhc--CCCEEeccccCCHHHH
Confidence 67789999999999998543 310 02344 689999999998 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhh
Q 012517 410 YRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali 427 (462)
++...+|||+|.+--+++
T Consensus 118 ~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 118 REARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHcCCCEEEeEHhhC
Confidence 999999999998887775
No 303
>PRK06801 hypothetical protein; Provisional
Probab=94.82 E-value=0.28 Score=49.53 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecC--CCCHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGG--ISSGE 407 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GG--I~s~~ 407 (462)
+.++..+.+.+.|+|.+-++..+. .|-+.|.| +...+.++++++.+ ++|++.-|| |. .+
T Consensus 157 ~pe~a~~f~~~tgvD~LAvaiGt~--------------Hg~y~~~~--~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e 217 (286)
T PRK06801 157 DPQLARDFVDRTGIDALAVAIGNA--------------HGKYKGEP--KLDFARLAAIHQQT--GLPLVLHGGSGIS-DA 217 (286)
T ss_pred CHHHHHHHHHHHCcCEEEeccCCC--------------CCCCCCCC--CCCHHHHHHHHHhc--CCCEEEECCCCCC-HH
Confidence 445556666689999998754331 12233322 34678899999988 699999999 87 68
Q ss_pred HHHHHHHhCCCEEEEchhhhh
Q 012517 408 DAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 408 dA~e~i~aGAd~Vqv~Tali~ 428 (462)
++.+.+++|++-|-++|.+..
T Consensus 218 ~~~~~i~~Gi~KINv~T~~~~ 238 (286)
T PRK06801 218 DFRRAIELGIHKINFYTGMSQ 238 (286)
T ss_pred HHHHHHHcCCcEEEehhHHHH
Confidence 899999999999999999853
No 304
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.79 E-value=0.34 Score=48.39 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=61.4
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+..+++.+.+.|++||.+..|+-.-. -+| .+.-.++++.+.+.+.+++|||+.=|=.+
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~-------------~lt----~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 80 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTTGESP-------------TLS----DEEHEAVIEAVVEAVNGRVPVIAGTGSNN 80 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcchh-------------hCC----HHHHHHHHHHHHHHhCCCCcEEeccCCcc
Confidence 6667899999999999999999876652211 011 12235677778888877888865444456
Q ss_pred HHHHHHHH----HhCCCEEEEchhhhh
Q 012517 406 GEDAYRKI----RAGATLVQLYTAFAY 428 (462)
Q Consensus 406 ~~dA~e~i----~aGAd~Vqv~Tali~ 428 (462)
.+++.+.. ++|||.|++.....+
T Consensus 81 ~~~~~~~a~~a~~~G~d~v~~~~P~~~ 107 (284)
T cd00950 81 TAEAIELTKRAEKAGADAALVVTPYYN 107 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccC
Confidence 77777655 479999999998754
No 305
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=94.78 E-value=0.16 Score=49.19 Aligned_cols=84 Identities=20% Similarity=0.109 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++|+...+.|+|-+++..=.- .-| .+..+++++++.+.+ |+...|||+|.+|+
T Consensus 37 dP~~~a~~~~~~g~~~l~ivDLd~-----------------~~~---~~~n~~~i~~i~~~~----~v~vgGGirs~e~~ 92 (221)
T TIGR00734 37 SPDDAAKVIEEIGARFIYIADLDR-----------------IVG---LGDNFSLLSKLSKRV----ELIADCGVRSPEDL 92 (221)
T ss_pred CHHHHHHHHHHcCCCEEEEEEccc-----------------ccC---CcchHHHHHHHHhhC----cEEEcCccCCHHHH
Confidence 678899999999999999874210 001 234678888888864 89999999999999
Q ss_pred HHHHH--hCCCEEEEchhhhhcCCChHHHHH
Q 012517 410 YRKIR--AGATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 410 ~e~i~--aGAd~Vqv~Tali~~GP~~i~~i~ 438 (462)
.+++. .||+-|-++|..+ +.|++++++.
T Consensus 93 ~~~~~~l~~a~rvvigT~a~-~~p~~l~~~~ 122 (221)
T TIGR00734 93 ETLPFTLEFASRVVVATETL-DITELLRECY 122 (221)
T ss_pred HHHHhhhccceEEeecChhh-CCHHHHHHhh
Confidence 99976 3699999999996 5798888764
No 306
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=94.75 E-value=0.7 Score=44.50 Aligned_cols=123 Identities=18% Similarity=0.168 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCCh-------
Q 012517 256 AADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSK------- 328 (462)
Q Consensus 256 ~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~------- 328 (462)
...|++.+... .+|++.+|-+.. .+.++..++...+ .+..+-+++.++ +.+.
T Consensus 65 v~~~~~~~~~~--gad~~Tvh~~~G----------~~~l~~~~~~~~~--------~~~~~~~v~~ls-s~~~~~~q~~~ 123 (216)
T cd04725 65 VAAAAEALLGL--GADAVTVHPYGG----------SDMLKAALEAAEE--------KGKGLFAVTVLS-SPGALDLQEGI 123 (216)
T ss_pred HHHHHHHHHhc--CCCEEEECCcCC----------HHHHHHHHHHHhc--------cCCeEEEEEcCC-CCCHHHHHhhh
Confidence 34555544444 499999996542 2333444433321 122345566777 2232
Q ss_pred -----hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCC
Q 012517 329 -----EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGI 403 (462)
Q Consensus 329 -----~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI 403 (462)
+....+++.+.+.|++|++++.|-. +.+ ++....+.+ +.+.||
T Consensus 124 ~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~----------------------------~~i---~~~~~~~~~-~ltPGI 171 (216)
T cd04725 124 PGSLEDLVERLAKLAREAGVDGVVCGATEP----------------------------EAL---RRALGPDFL-ILTPGI 171 (216)
T ss_pred cCCHHHHHHHHHHHHHHHCCCEEEECCcch----------------------------HHH---HHhhCCCCe-EEcCCc
Confidence 2345778888999999998875521 112 333333454 888999
Q ss_pred CC---------HHHHHHHHHhCCCEEEEchhhhhcCCC
Q 012517 404 SS---------GEDAYRKIRAGATLVQLYTAFAYGGPA 432 (462)
Q Consensus 404 ~s---------~~dA~e~i~aGAd~Vqv~Tali~~GP~ 432 (462)
.- +-+..+.+++|++.+-+++++.. .++
T Consensus 172 ~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~-a~~ 208 (216)
T cd04725 172 GAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQ-AAD 208 (216)
T ss_pred CCCCCccccccccCHHHHHHcCCcEEEEChhhcc-CCC
Confidence 83 22677778899999999999965 344
No 307
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.68 E-value=0.41 Score=48.26 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=61.3
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+..+++.+.+.|+|||.+..||-.-. -+| .+.-.++++.+.+.+++++|||+.=| .+
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~-------------~Lt----~eEr~~v~~~~~~~~~g~~pvi~gv~-~~ 84 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGTGEFF-------------SLT----PAEYEQVVEIAVSTAKGKVPVYTGVG-GN 84 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCCcCcc-------------cCC----HHHHHHHHHHHHHHhCCCCcEEEecC-cc
Confidence 6667899999999999999999877763211 011 11234667777778888888776555 36
Q ss_pred HHHHHHHH----HhCCCEEEEchhhhh
Q 012517 406 GEDAYRKI----RAGATLVQLYTAFAY 428 (462)
Q Consensus 406 ~~dA~e~i----~aGAd~Vqv~Tali~ 428 (462)
-+++.+.. ++|||.|++...+.+
T Consensus 85 t~~ai~~a~~a~~~Gadav~~~pP~y~ 111 (296)
T TIGR03249 85 TSDAIEIARLAEKAGADGYLLLPPYLI 111 (296)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 77777765 489999999998854
No 308
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=94.61 E-value=1.6 Score=41.53 Aligned_cols=193 Identities=19% Similarity=0.300 Sum_probs=117.6
Q ss_pred cEEeCCCCCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCcc
Q 012517 138 PLGLAAGFDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKL 217 (462)
Q Consensus 138 PiglAAG~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~ 217 (462)
|=+|++-|..-++...++.+.|.-.+-+--. .|.--|.+- |-. -+.+.|++...+
T Consensus 9 PSIL~~dfanL~~e~~~~l~~GadwlHlDVM-----Dg~FVpNiT-------------~G~----pvV~slR~~~~~--- 63 (224)
T KOG3111|consen 9 PSILSSDFANLAAECKKMLDAGADWLHLDVM-----DGHFVPNIT-------------FGP----PVVESLRKHTGA--- 63 (224)
T ss_pred hhhhccchHHHHHHHHHHHHcCCCeEEEeee-----cccccCCcc-------------cch----HHHHHHHhccCC---
Confidence 4456666777788888899999887754321 122112211 111 345566543211
Q ss_pred cccccCCCCCCCcccCCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHH
Q 012517 218 DETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDL 297 (462)
Q Consensus 218 ~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~l 297 (462)
+..+-+.+.-. +|+ +|+.-+..++ |+.+.++.- ..+.+.++
T Consensus 64 ---------------------~~ffD~HmMV~--~Pe---q~V~~~a~ag--as~~tfH~E-----------~~q~~~~l 104 (224)
T KOG3111|consen 64 ---------------------DPFFDVHMMVE--NPE---QWVDQMAKAG--ASLFTFHYE-----------ATQKPAEL 104 (224)
T ss_pred ---------------------CcceeEEEeec--CHH---HHHHHHHhcC--cceEEEEEe-----------eccCHHHH
Confidence 01233333321 466 6666666655 888877641 11236677
Q ss_pred HHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCc
Q 012517 298 VKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLL 377 (462)
Q Consensus 298 l~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~ 377 (462)
++.+++. ..-+.+-|-|..+-+++...++ -+|.+.+- |. + =|+.|....
T Consensus 105 v~~ir~~----------Gmk~G~alkPgT~Ve~~~~~~~-----~~D~vLvM-tV--------------e-PGFGGQkFm 153 (224)
T KOG3111|consen 105 VEKIREK----------GMKVGLALKPGTPVEDLEPLAE-----HVDMVLVM-TV--------------E-PGFGGQKFM 153 (224)
T ss_pred HHHHHHc----------CCeeeEEeCCCCcHHHHHHhhc-----cccEEEEE-Ee--------------c-CCCchhhhH
Confidence 7777753 5677777788776555555543 35655432 21 0 133344445
Q ss_pred cchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 378 SLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 378 ~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
+-.+..|+.+|+..+ ++-|=.-|||. ++.+....+|||+++..+|+++
T Consensus 154 e~mm~KV~~lR~kyp-~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf 201 (224)
T KOG3111|consen 154 EDMMPKVEWLREKYP-NLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVF 201 (224)
T ss_pred HHHHHHHHHHHHhCC-CceEEecCCcC-cchHHHHHHcCCCEEEecceee
Confidence 556788888997775 56676899986 8899999999999999999985
No 309
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.60 E-value=0.14 Score=51.12 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=48.9
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
+..+.+.|+|.|-+.|-. .+.++++.+..+.++||.++||| +.+.+.++.+
T Consensus 195 a~~A~~~gaDyI~ld~~~----------------------------~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~ 245 (268)
T cd01572 195 LKEALEAGADIIMLDNMS----------------------------PEELREAVALLKGRVLLEASGGI-TLENIRAYAE 245 (268)
T ss_pred HHHHHHcCCCEEEECCcC----------------------------HHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHH
Confidence 444567999999876532 24566666665446999999999 5999999999
Q ss_pred hCCCEEEEchhh
Q 012517 415 AGATLVQLYTAF 426 (462)
Q Consensus 415 aGAd~Vqv~Tal 426 (462)
+|+|.+.+++..
T Consensus 246 ~Gvd~Iav~sl~ 257 (268)
T cd01572 246 TGVDYISVGALT 257 (268)
T ss_pred cCCCEEEEEeee
Confidence 999999998854
No 310
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.58 E-value=0.48 Score=47.54 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=60.4
Q ss_pred CChhhHHHHHHHHHHc-CCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC
Q 012517 326 LSKEDLEDIAAVAVAL-RLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS 404 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~-GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~ 404 (462)
++.+.+..+++.+.+. |++||.+..+|-.-. -|+ .+.-.++++.+.+.+.+++|||+.=|-.
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~-------------~Lt----~~Er~~~~~~~~~~~~~~~~viagv~~~ 80 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNGSTGEGF-------------LLS----VEERKQIAEIVAEAAKGKVTLIAHVGSL 80 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECcCCcCcc-------------cCC----HHHHHHHHHHHHHHhCCCCeEEeccCCC
Confidence 5667899999999999 999998887763211 011 1223567777777777789987643335
Q ss_pred CHHHHHHHH----HhCCCEEEEchhhhh
Q 012517 405 SGEDAYRKI----RAGATLVQLYTAFAY 428 (462)
Q Consensus 405 s~~dA~e~i----~aGAd~Vqv~Tali~ 428 (462)
+.+|+.+.. ++|||.|++...+.+
T Consensus 81 ~~~~ai~~a~~a~~~Gad~v~~~~P~y~ 108 (288)
T cd00954 81 NLKESQELAKHAEELGYDAISAITPFYY 108 (288)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 566665544 589999999998854
No 311
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=94.54 E-value=0.22 Score=49.45 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=78.4
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCC-CCcccc------cCc-hHHHHHHHHHHHHHHhhccCC
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNT-PGLRML------QGR-KQLKDLVKKVQAARDEMQWGE 312 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt-~glr~l------q~~-~~l~~ll~aV~~~~~~~~~~~ 312 (462)
++|+..|- - -.++++++-+ +|.|.+==|-..- .|..++ .|. +.+.++.+.|.-.+
T Consensus 17 Iig~gaGt----G----lsAk~ae~gG--aDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v------- 79 (268)
T PF09370_consen 17 IIGAGAGT----G----LSAKCAEKGG--ADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVV------- 79 (268)
T ss_dssp EEEEEESS----H----HHHHHHHHTT---SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG--------
T ss_pred eEEEeecc----c----hhhHHHHhcC--CCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhc-------
Confidence 67887763 1 3345555555 9998872111000 121111 222 34444444443222
Q ss_pred CCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCC-CCCCCcccccCCCCCCcCccchHHHHHHHHHhc
Q 012517 313 EGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDP-VSKNPVAKETGGLSGKPLLSLSNNILKEMYLLT 391 (462)
Q Consensus 313 ~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~-~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~ 391 (462)
.+.||+.-+-..=+.-++..+.+.+++.|+.||.-.-|. +..|. .. . ...+. |++ +.+=.+++++.++
T Consensus 80 -~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTv-gliDG~fR-~-~LEe~-Gmg----y~~EVemi~~A~~-- 148 (268)
T PF09370_consen 80 -KDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTV-GLIDGQFR-Q-NLEET-GMG----YDREVEMIRKAHE-- 148 (268)
T ss_dssp -SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-G-GG--HHHH-H-HHHHT-T------HHHHHHHHHHHHH--
T ss_pred -cCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcc-eeeccHHH-H-HHHhc-CCC----HHHHHHHHHHHHH--
Confidence 368999998643223378899999999999999755343 21110 00 0 01122 222 3334556655554
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcC
Q 012517 392 RGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGG 430 (462)
Q Consensus 392 ~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~G 430 (462)
.-++.++=++|.+||.++.+||||.+-+.=++-..|
T Consensus 149 ---~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG 184 (268)
T PF09370_consen 149 ---KGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGG 184 (268)
T ss_dssp ---TT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----
T ss_pred ---CCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCC
Confidence 446777778999999999999999999988886544
No 312
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.53 E-value=0.5 Score=47.33 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=62.3
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+..+++.+.+.|++||.+..|+-.-. -+| .+.-.++++.+.+.+.+++|||+.=|=.+
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~-------------~Ls----~~Er~~~~~~~~~~~~~~~~vi~gv~~~s 78 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVGTTGESP-------------TLS----HEEHKKVIEFVVDLVNGRVPVIAGTGSNA 78 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccc-------------cCC----HHHHHHHHHHHHHHhCCCCeEEEeCCCcc
Confidence 6667899999999999999999866652211 011 11235667777777777899886666667
Q ss_pred HHHHHHHHH----hCCCEEEEchhhhh
Q 012517 406 GEDAYRKIR----AGATLVQLYTAFAY 428 (462)
Q Consensus 406 ~~dA~e~i~----aGAd~Vqv~Tali~ 428 (462)
.+++.+..+ +|||.|++.....+
T Consensus 79 ~~~~i~~a~~a~~~Gad~v~v~pP~y~ 105 (285)
T TIGR00674 79 TEEAISLTKFAEDVGADGFLVVTPYYN 105 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcCC
Confidence 777777664 69999999999855
No 313
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=94.51 E-value=1.2 Score=43.00 Aligned_cols=134 Identities=12% Similarity=0.064 Sum_probs=73.2
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLII 348 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIiv 348 (462)
.+|++.++-.++. +.+.+.++++++ ...-+.|=+-+..+.+++. ...+.+++-+++
T Consensus 80 Gad~vTvH~~a~~----------~~i~~~~~~~~~----------~g~~~~V~llts~~~~~l~----~~~~~~~~~~vl 135 (216)
T PRK13306 80 GADWVTVICAAHI----------PTIKAALKVAKE----------FNGEIQIELYGNWTWEQAQ----QWRDAGISQVIY 135 (216)
T ss_pred CCCEEEEeCCCCH----------HHHHHHHHHHHH----------cCCEEEEEECCCCCHHHHH----HHHcCChhhhhh
Confidence 4999999975521 224444444432 1346777776766554443 334444443332
Q ss_pred ecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 349 SNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 349 sNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
.=+. ..++.|-...+..++ ++++..+.+..|..+|||+ ++.+....++|||.+-++|++ +
T Consensus 136 ~~a~---------------~~~~~G~v~s~~~~~---~ir~~~~~~~~i~V~gGI~-~~~~~~~~~~~ad~~VvGr~I-~ 195 (216)
T PRK13306 136 HRSR---------------DAQLAGVAWGEKDLN---KVKKLSDMGFKVSVTGGLV-VEDLKLFKGIPVKTFIAGRAI-R 195 (216)
T ss_pred hhhh---------------hhhhcCCCCCHHHHH---HHHHHhcCCCeEEEcCCCC-HhhHHHHhcCCCCEEEECCcc-c
Confidence 2110 001223222223334 4444443355699999998 344444566799999999995 5
Q ss_pred cCCChHHHHHHHHHHHHHH
Q 012517 429 GGPALIPQIKAELAECLER 447 (462)
Q Consensus 429 ~GP~~i~~i~~~L~~~l~~ 447 (462)
+-++ +.+..+++.+.+.+
T Consensus 196 ~a~d-p~~a~~~i~~~i~~ 213 (216)
T PRK13306 196 GAAD-PAAAARAFKDEIAK 213 (216)
T ss_pred CCCC-HHHHHHHHHHHHHh
Confidence 5566 55555555555543
No 314
>PLN02535 glycolate oxidase
Probab=94.51 E-value=0.59 Score=48.77 Aligned_cols=106 Identities=12% Similarity=0.146 Sum_probs=70.8
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCcc---CCCCCC----CCCccccc-------CCCCCCc-----
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS---RPDPVS----KNPVAKET-------GGLSGKP----- 375 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~---r~~~~~----~~~~~~~~-------GGlSG~~----- 375 (462)
+-|.|..+=..-+.+-..++++.++++|+.+|+++=-+.- |..+.. .+...... .+..+..
T Consensus 123 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (364)
T PLN02535 123 NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFA 202 (364)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHH
Confidence 4589999987666677899999999999999998743311 111111 01000000 0000010
Q ss_pred ----CccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 376 ----LLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 376 ----l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
....+.+.++.+++.. +.||| +.||.+++||...+++|+|.|.+.
T Consensus 203 ~~~~~~~~tW~~i~~lr~~~--~~Pvi-vKgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 203 SETFDASLSWKDIEWLRSIT--NLPIL-IKGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred HhccCCCCCHHHHHHHHhcc--CCCEE-EecCCCHHHHHHHHhcCCCEEEEe
Confidence 1235678899999988 68865 678999999999999999999875
No 315
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.51 E-value=0.54 Score=47.53 Aligned_cols=85 Identities=28% Similarity=0.224 Sum_probs=64.9
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
.|+++.+-+..+.++..+.++.+.+.|+|+|.++=.... .|.. ...+.++++++.+ ++
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~-------------~~~~-------~~~~~i~~l~~~~--~~ 173 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPV-------------LGRR-------LTWDDLAWLRSQW--KG 173 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC-------------CCCC-------CCHHHHHHHHHhc--CC
Confidence 699999976555567888899999999999987521110 0110 2567899999988 58
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 396 PLIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 396 pIIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
||+.- +|.+.++|....++|||.|-+.
T Consensus 174 pvivK-~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 174 PLILK-GILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CEEEe-ecCCHHHHHHHHHCCCCEEEEc
Confidence 88775 6899999999999999999883
No 316
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.49 E-value=0.14 Score=55.29 Aligned_cols=69 Identities=23% Similarity=0.280 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHH
Q 012517 331 LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAY 410 (462)
Q Consensus 331 ~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~ 410 (462)
..+.++.+.++|+|.|++ +++.++. ...++.++.+++..+ ++|||+ |+|.|.++|.
T Consensus 229 ~~e~a~~L~~agvdvivv-D~a~g~~---------------------~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a~ 284 (486)
T PRK05567 229 NEERAEALVEAGVDVLVV-DTAHGHS---------------------EGVLDRVREIKAKYP-DVQIIA-GNVATAEAAR 284 (486)
T ss_pred hHHHHHHHHHhCCCEEEE-ECCCCcc---------------------hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHHH
Confidence 367888999999996654 3332111 114677888988875 688887 9999999999
Q ss_pred HHHHhCCCEEEEc
Q 012517 411 RKIRAGATLVQLY 423 (462)
Q Consensus 411 e~i~aGAd~Vqv~ 423 (462)
..+++||+.|.++
T Consensus 285 ~l~~aGad~i~vg 297 (486)
T PRK05567 285 ALIEAGADAVKVG 297 (486)
T ss_pred HHHHcCCCEEEEC
Confidence 9999999999763
No 317
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.49 E-value=0.2 Score=50.18 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=92.6
Q ss_pred HHHHHHcccCcEEEEe---ccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCCh-hhHHHHHH
Q 012517 261 QGVHTLSQYADYLVIN---VSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSK-EDLEDIAA 336 (462)
Q Consensus 261 ~~~~~l~~~aD~leiN---vSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~-~~~~~ia~ 336 (462)
.++++++ +..+-+. ++. .-|++|+.... +.+++..+++.++. .+.||+|-+-..+.+ .++...++
T Consensus 32 ~la~~aG--F~al~~sg~~vA~--slG~pD~~~~t-~~e~~~~vrrI~~a------~~lPv~vD~dtGfG~~~nvartV~ 100 (289)
T COG2513 32 LLAERAG--FKALYLSGAGVAA--SLGLPDLGITT-LDEVLADARRITDA------VDLPVLVDIDTGFGEALNVARTVR 100 (289)
T ss_pred HHHHHcC--CeEEEeccHHHHH--hcCCCcccccc-HHHHHHHHHHHHhh------cCCceEEeccCCCCcHHHHHHHHH
Confidence 4455554 6666653 221 23666654332 55566666555432 489999999776653 36777788
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC----CCccEE------EecCCCCH
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR----GKIPLI------GCGGISSG 406 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~----~~ipII------g~GGI~s~ 406 (462)
.++++|+.|+.+=.... ....|-+.|+++.+.. +.+.+|+.... .++-|+ ++|| -
T Consensus 101 ~~~~aG~agi~iEDq~~-----------pk~cgh~~gk~l~~~~-e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~---l 165 (289)
T COG2513 101 ELEQAGAAGIHIEDQVG-----------PKRCGHLPGKELVSID-EMVDRIKAAVEARRDPDFVIIARTDALLVEG---L 165 (289)
T ss_pred HHHHcCcceeeeeeccc-----------chhcCCCCCCCcCCHH-HHHHHHHHHHHhccCCCeEEEeehHHHHhcc---H
Confidence 88999999998754432 1245667889888774 45555555432 233343 3566 4
Q ss_pred HHHH----HHHHhCCCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 407 EDAY----RKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 407 ~dA~----e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
++|+ .+++||||++ +.-.+. .++-++++.+.+.
T Consensus 166 d~AI~Ra~AY~eAGAD~i--f~~al~-~~e~i~~f~~av~ 202 (289)
T COG2513 166 DDAIERAQAYVEAGADAI--FPEALT-DLEEIRAFAEAVP 202 (289)
T ss_pred HHHHHHHHHHHHcCCcEE--ccccCC-CHHHHHHHHHhcC
Confidence 5554 4567999976 444433 4666666666654
No 318
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=94.48 E-value=0.52 Score=49.17 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=67.4
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCc--c-CCCCC----CCCC-c------ccccCC-----CCCCcC
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTI--S-RPDPV----SKNP-V------AKETGG-----LSGKPL 376 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~--~-r~~~~----~~~~-~------~~~~GG-----lSG~~l 376 (462)
-|.|.=+-..-+.+-..++++.++++|+.+|++|=-+. + |..+. ..+. . ....++ +.+..-
T Consensus 133 ~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (367)
T TIGR02708 133 TPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAK 212 (367)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccC
Confidence 47777765544444558999999999999999974321 1 11000 0000 0 000000 001111
Q ss_pred ccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 012517 377 LSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 377 ~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~T 424 (462)
...+.+.++.+++.+ ++||| +-||.+++||..++++|+|.|.|.-
T Consensus 213 ~~~~w~~i~~l~~~~--~~Pvi-vKGv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 213 QKLSPRDIEEIAGYS--GLPVY-VKGPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CCCCHHHHHHHHHhc--CCCEE-EeCCCCHHHHHHHHHcCcCEEEECC
Confidence 235678899999998 68988 5589999999999999999886653
No 319
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.46 E-value=6.3 Score=39.96 Aligned_cols=86 Identities=14% Similarity=0.027 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccE---EEecCCC
Q 012517 328 KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPL---IGCGGIS 404 (462)
Q Consensus 328 ~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipI---Ig~GGI~ 404 (462)
.++..+=+++..++|+|+|.+... .+.+.++++.+.++ .|+ +..||-+
T Consensus 164 ~deaI~Ra~aY~eAGAD~ifi~~~---------------------------~~~~ei~~~~~~~~--~P~~~nv~~~~~~ 214 (294)
T TIGR02319 164 LDEAIRRSREYVAAGADCIFLEAM---------------------------LDVEEMKRVRDEID--APLLANMVEGGKT 214 (294)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCC---------------------------CCHHHHHHHHHhcC--CCeeEEEEecCCC
Confidence 345556677778999999976421 13466788888884 455 4555544
Q ss_pred CHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHH
Q 012517 405 SGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECL 445 (462)
Q Consensus 405 s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l 445 (462)
-.-...++-+.|.+.|-++..++.. ....+++.+.+++
T Consensus 215 p~~s~~eL~~lG~~~v~~~~~~~~a---a~~a~~~~~~~l~ 252 (294)
T TIGR02319 215 PWLTTKELESIGYNLAIYPLSGWMA---AASVLRKLFTELR 252 (294)
T ss_pred CCCCHHHHHHcCCcEEEEcHHHHHH---HHHHHHHHHHHHH
Confidence 3346778888999999998887642 3444444444433
No 320
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.45 E-value=7.9 Score=43.10 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=67.0
Q ss_pred cCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE---
Q 012517 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG--- 399 (462)
Q Consensus 323 spdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg--- 399 (462)
+|-.+.+...++++.+.+.|+|.|.+..|. |.+. .....++++.+++.+ ++||-.
T Consensus 148 ~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~----------------G~~~----P~~~~~lv~~lk~~~--~~pi~~H~H 205 (592)
T PRK09282 148 SPVHTIEKYVELAKELEEMGCDSICIKDMA----------------GLLT----PYAAYELVKALKEEV--DLPVQLHSH 205 (592)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCcC----------------CCcC----HHHHHHHHHHHHHhC--CCeEEEEEc
Confidence 454566788999999999999999888664 2211 123567888888887 366643
Q ss_pred -ecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 400 -CGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 400 -~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
.-|.. ..-.++++++||+.|+..-.=+-+|.+ +--.+.+...|+..|+.
T Consensus 206 nt~Gla-~An~laAv~aGad~vD~ai~g~g~~ag--n~~~e~vv~~L~~~g~~ 255 (592)
T PRK09282 206 CTSGLA-PMTYLKAVEAGVDIIDTAISPLAFGTS--QPPTESMVAALKGTPYD 255 (592)
T ss_pred CCCCcH-HHHHHHHHHhCCCEEEeeccccCCCcC--CHhHHHHHHHHHhCCCC
Confidence 22222 445677889999999887664433332 33334455555555654
No 321
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.33 E-value=0.92 Score=43.30 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=96.3
Q ss_pred HHHHHHHHHcc-cCcEEEEe--ccCCCCCC-------cccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe--cCC
Q 012517 258 DYVQGVHTLSQ-YADYLVIN--VSSPNTPG-------LRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI--APD 325 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiN--vSsPnt~g-------lr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi--spd 325 (462)
+-++.++-+.. .+|.||+- +|-|-..| .|.|++.-.+..+++-|++++++ +..+||++=- .|-
T Consensus 33 ~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~-----gvt~PIiLmgYYNPI 107 (268)
T KOG4175|consen 33 TTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQ-----GVTCPIILMGYYNPI 107 (268)
T ss_pred HHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhccc-----CcccceeeeecccHH
Confidence 45555555555 39999985 56665543 34577777888999999988753 3567776532 111
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCC---------------------------ccCCCCCCC----CCcccccCCCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTT---------------------------ISRPDPVSK----NPVAKETGGLSGK 374 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt---------------------------~~r~~~~~~----~~~~~~~GGlSG~ 374 (462)
+.. -.+...+.+.++|+.|+++..-- -.|.+.+.. .-.....-|..|.
T Consensus 108 l~y-G~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~ 186 (268)
T KOG4175|consen 108 LRY-GVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMGVTGT 186 (268)
T ss_pred Hhh-hHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEecccccc
Confidence 111 12344455555666665554211 111110000 0001112233332
Q ss_pred --cCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 375 --PLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 375 --~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
.+...-.++++++|+.++ +.|+..-=||.++|+..+.-.- ||.|.+++.++
T Consensus 187 ~~svn~~l~~L~qrvrk~t~-dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv 239 (268)
T KOG4175|consen 187 RESVNEKLQSLLQRVRKATG-DTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCceeEeeccCCHHHHHhhhhh-ccceEecHHHH
Confidence 133334567889999986 7899888899999998877665 99999999986
No 322
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.29 E-value=0.48 Score=48.58 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=59.6
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcC--CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 318 LLVKIAPDLSKEDLEDIAAVAVALR--LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 318 v~vKispdl~~~~~~~ia~~~~~~G--vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
+++=++...++++++.+ ..+.++| +|.|++- +.. |.| ...++.++.+++.+ ..
T Consensus 83 L~v~~SvG~t~e~~~r~-~~lv~a~~~~d~i~~D-~ah----------------g~s-----~~~~~~i~~i~~~~--p~ 137 (321)
T TIGR01306 83 LFASISVGVKACEYEFV-TQLAEEALTPEYITID-IAH----------------GHS-----NSVINMIKHIKTHL--PD 137 (321)
T ss_pred cEEEEEcCCCHHHHHHH-HHHHhcCCCCCEEEEe-Ccc----------------Cch-----HHHHHHHHHHHHhC--CC
Confidence 46777777777676554 4455567 6887653 211 211 23568889999988 46
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 396 PLIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 396 pIIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
|++..|.|.++++|...+++|||.|.++
T Consensus 138 ~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 138 SFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 8899999999999999999999999877
No 323
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.28 E-value=0.53 Score=48.36 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=53.0
Q ss_pred cCCCChhhHHHHHHHHHHc--CCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe
Q 012517 323 APDLSKEDLEDIAAVAVAL--RLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC 400 (462)
Q Consensus 323 spdl~~~~~~~ia~~~~~~--GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~ 400 (462)
+-...+++. +.++.+.++ ++|.|++- +.. |.| ...++.|+.+++..++ +.|..
T Consensus 101 svG~~~~d~-er~~~L~~a~~~~d~iviD-~Ah----------------Ghs-----~~~i~~ik~ir~~~p~--~~via 155 (343)
T TIGR01305 101 SSGSSDNDL-EKMTSILEAVPQLKFICLD-VAN----------------GYS-----EHFVEFVKLVREAFPE--HTIMA 155 (343)
T ss_pred EeccCHHHH-HHHHHHHhcCCCCCEEEEE-CCC----------------CcH-----HHHHHHHHHHHhhCCC--CeEEE
Confidence 444444454 445556655 59988763 211 222 2357889999998852 56677
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEc
Q 012517 401 GGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 401 GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
|.|-|+++|.+.+++|||.|-++
T Consensus 156 GNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 156 GNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred ecccCHHHHHHHHHcCCCEEEEc
Confidence 88999999999999999999765
No 324
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.24 E-value=1 Score=42.46 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=75.0
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE-EEecCCCChhhHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL-VKIAPDLSKEDLEDIA 335 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~-vKispdl~~~~~~~ia 335 (462)
+....++.+.+ .++.+|+-..+|+. .++++.+++.. |+. +.-.+-+. .+-+
T Consensus 25 ~~~~~~~~~~~~Gv~~vqlr~k~~~~------------~e~~~~~~~~~-----------~~~~~g~gtvl~----~d~~ 77 (187)
T PRK07455 25 LGLQMAEAVAAGGMRLIEITWNSDQP------------AELISQLREKL-----------PECIIGTGTILT----LEDL 77 (187)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCH------------HHHHHHHHHhC-----------CCcEEeEEEEEc----HHHH
Confidence 44555555544 39999998766532 24555554431 221 22222232 2456
Q ss_pred HHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHh
Q 012517 336 AVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRA 415 (462)
Q Consensus 336 ~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~a 415 (462)
+.+.+.|+|||+..... .+ +..+++.. +++.+ .| +.|++++.+..++
T Consensus 78 ~~A~~~gAdgv~~p~~~----------------------------~~-~~~~~~~~--~~~~i-~G-~~t~~e~~~A~~~ 124 (187)
T PRK07455 78 EEAIAAGAQFCFTPHVD----------------------------PE-LIEAAVAQ--DIPII-PG-ALTPTEIVTAWQA 124 (187)
T ss_pred HHHHHcCCCEEECCCCC----------------------------HH-HHHHHHHc--CCCEE-cC-cCCHHHHHHHHHC
Confidence 77889999999743211 11 22334444 34432 33 8999999999999
Q ss_pred CCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 416 GATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 416 GAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
|||.|.++-+-...||.+++.++.-+
T Consensus 125 Gadyv~~Fpt~~~~G~~~l~~~~~~~ 150 (187)
T PRK07455 125 GASCVKVFPVQAVGGADYIKSLQGPL 150 (187)
T ss_pred CCCEEEECcCCcccCHHHHHHHHhhC
Confidence 99999997654344788888877544
No 325
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.23 E-value=1.5 Score=41.99 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=54.1
Q ss_pred CCCEEEEecCCCChhh-----HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHH
Q 012517 315 PPPLLVKIAPDLSKED-----LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYL 389 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~-----~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~ 389 (462)
++|++.-...+++..+ ..+.++.+.++|+|.|++......+++ .....++++++++
T Consensus 60 ~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~p~-------------------~~~~~~~i~~~~~ 120 (219)
T cd04729 60 DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPRPD-------------------GETLAELIKRIHE 120 (219)
T ss_pred CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCCCC-------------------CcCHHHHHHHHHH
Confidence 6898752222321101 123568899999997665432211110 0124567777777
Q ss_pred hcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 390 LTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 390 ~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
.. +++++. ++.|.+++....++|+|.+.+.
T Consensus 121 ~g--~~~iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 121 EY--NCLLMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred Hh--CCeEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 65 577665 7899999999999999999764
No 326
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=94.17 E-value=3.4 Score=41.59 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHccc-CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecC-CCChhhH
Q 012517 254 DAAADYVQGVHTLSQY-ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAP-DLSKEDL 331 (462)
Q Consensus 254 ~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKisp-dl~~~~~ 331 (462)
+..+.+.+.++.+..+ .||+-|..+. |.. .++.-.+++..+++. ..+|++.=++. |.+.+++
T Consensus 13 ~~~~~~~~~~~~l~~~~p~fvsvT~~~----~~~---~~~~t~~~~~~l~~~---------~g~~~i~Hltcr~~~~~~l 76 (281)
T TIGR00677 13 EGVQNLYERMDRMVASGPLFIDITWGA----GGT---TAELTLTIASRAQNV---------VGVETCMHLTCTNMPIEMI 76 (281)
T ss_pred hHHHHHHHHHHHHhhCCCCEEEeccCC----CCc---chhhHHHHHHHHHHh---------cCCCeeEEeccCCCCHHHH
Confidence 3355677777777664 7888776642 111 223334555555543 25777777775 4666788
Q ss_pred HHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC-------
Q 012517 332 EDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS------- 404 (462)
Q Consensus 332 ~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~------- 404 (462)
.+.+..+.+.|++-|.+.-.-....+. . +-..+..++.+.++|+.+++..+..+ -||++|.-
T Consensus 77 ~~~L~~~~~~Gi~niLal~GD~p~~~~-----~-----~~~~~~~f~~a~~Li~~i~~~~~~~f-~igva~~Pe~Hp~~~ 145 (281)
T TIGR00677 77 DDALERAYSNGIQNILALRGDPPHIGD-----D-----WTEVEGGFQYAVDLVKYIRSKYGDYF-CIGVAGYPEGHPEAE 145 (281)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCC-----C-----CCCCCCCCcCHHHHHHHHHHhCCCce-EEEEEECCCCCCCCC
Confidence 888888999999988665332110000 0 00011234568899999988754223 57777763
Q ss_pred CH----HHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 405 SG----EDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 405 s~----~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
+. +-..+++++||+ .+-|-++| ++..+.++.+.++
T Consensus 146 ~~~~d~~~L~~Ki~aGA~--f~iTQ~~F-d~~~~~~f~~~~~ 184 (281)
T TIGR00677 146 SVELDLKYLKEKVDAGAD--FIITQLFY-DVDNFLKFVNDCR 184 (281)
T ss_pred CHHHHHHHHHHHHHcCCC--Eeecccee-cHHHHHHHHHHHH
Confidence 22 234566789999 55788877 5766666655543
No 327
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.16 E-value=0.18 Score=54.41 Aligned_cols=70 Identities=20% Similarity=0.342 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHH
Q 012517 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGED 408 (462)
Q Consensus 329 ~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~d 408 (462)
++..+.++.+.+.|+|.|++- ++.+. -....+.++++++..+ +++|| .|.|.|.+.
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D-~a~~~---------------------~~~~~~~i~~ik~~~p-~~~v~-agnv~t~~~ 281 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVD-TAHGH---------------------QEKMLEALRAVRALDP-GVPIV-AGNVVTAEG 281 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEe-ccCCc---------------------cHHHHHHHHHHHHHCC-CCeEE-eeccCCHHH
Confidence 367789999999999997653 33211 1235788999999886 56555 589999999
Q ss_pred HHHHHHhCCCEEEE
Q 012517 409 AYRKIRAGATLVQL 422 (462)
Q Consensus 409 A~e~i~aGAd~Vqv 422 (462)
|.+.+++|||.|-+
T Consensus 282 a~~l~~aGad~v~v 295 (479)
T PRK07807 282 TRDLVEAGADIVKV 295 (479)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999873
No 328
>PLN02979 glycolate oxidase
Probab=94.16 E-value=0.73 Score=47.98 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=70.2
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCcc---CCCCC----CCCCc---ccc----cC--------C---
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS---RPDPV----SKNPV---AKE----TG--------G--- 370 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~---r~~~~----~~~~~---~~~----~G--------G--- 370 (462)
-|.|.++=..-+.+-..++++.++++|+.+|++|=-+.. |..+. ..++. ... .+ +
T Consensus 121 ~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (366)
T PLN02979 121 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS 200 (366)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHH
Confidence 478888866556667889999999999999998732211 11000 00000 000 00 0
Q ss_pred -CCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchh
Q 012517 371 -LSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 371 -lSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Ta 425 (462)
.++......+.+-++.+++.. ++||| +.||.+++||...+++|+|.|.+...
T Consensus 201 ~~~~~~~~~ltW~dl~wlr~~~--~~Pvi-vKgV~~~~dA~~a~~~Gvd~I~Vsnh 253 (366)
T PLN02979 201 YVAGQIDRTLSWKDVQWLQTIT--KLPIL-VKGVLTGEDARIAIQAGAAGIIVSNH 253 (366)
T ss_pred HHhhcCCCCCCHHHHHHHHhcc--CCCEE-eecCCCHHHHHHHHhcCCCEEEECCC
Confidence 001112235778899999998 68976 56788999999999999999988653
No 329
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.13 E-value=0.37 Score=44.84 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=52.8
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
++|.|-... +++ ++.+.++|+|.|-+-|-+.. .-.+++++++ ..++++
T Consensus 81 ~~I~VEv~~------~ee-~~ea~~~g~d~I~lD~~~~~------------------------~~~~~v~~l~-~~~~~v 128 (169)
T PF01729_consen 81 KKIEVEVEN------LEE-AEEALEAGADIIMLDNMSPE------------------------DLKEAVEELR-ELNPRV 128 (169)
T ss_dssp SEEEEEESS------HHH-HHHHHHTT-SEEEEES-CHH------------------------HHHHHHHHHH-HHTTTS
T ss_pred ceEEEEcCC------HHH-HHHHHHhCCCEEEecCcCHH------------------------HHHHHHHHHh-hcCCcE
Confidence 347776642 222 45567799999998876421 1234455553 444579
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 396 PLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 396 pIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
-|.++|||+ .+.+.++.+.|+|.+.+++..
T Consensus 129 ~ie~SGGI~-~~ni~~ya~~gvD~isvg~~~ 158 (169)
T PF01729_consen 129 KIEASGGIT-LENIAEYAKTGVDVISVGSLT 158 (169)
T ss_dssp EEEEESSSS-TTTHHHHHHTT-SEEEECHHH
T ss_pred EEEEECCCC-HHHHHHHHhcCCCEEEcChhh
Confidence 999999996 899999999999999998875
No 330
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.11 E-value=0.88 Score=46.16 Aligned_cols=87 Identities=20% Similarity=0.245 Sum_probs=64.8
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ ..|+|.++=|+ |.......+.-.++++.+++++ +.++||++=+..+-+ ++..++++
T Consensus 26 a~~~lv~~li~~Gv~gi~~~Gtt----GE~~~Ls~eEr~~v~~~~v~~~-------~grvpviaG~g~~~t-~eai~lak 93 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTT----GESPTLTLEERKEVLEAVVEAV-------GGRVPVIAGVGSNST-AEAIELAK 93 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCC----ccchhcCHHHHHHHHHHHHHHH-------CCCCcEEEecCCCcH-HHHHHHHH
Confidence 66666666654 48999998654 4444455566677888888776 357999999987654 47789999
Q ss_pred HHHHcCCcEEEEecCCccCC
Q 012517 337 VAVALRLDGLIISNTTISRP 356 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~ 356 (462)
.+++.|+|||.+....+.++
T Consensus 94 ~a~~~Gad~il~v~PyY~k~ 113 (299)
T COG0329 94 HAEKLGADGILVVPPYYNKP 113 (299)
T ss_pred HHHhcCCCEEEEeCCCCcCC
Confidence 99999999999987765554
No 331
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.04 E-value=0.47 Score=47.66 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCc
Q 012517 296 DLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKP 375 (462)
Q Consensus 296 ~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~ 375 (462)
.+.++|.+.+... ...+|.|-+. .+++ +..+.++|+|.|-+-|-+..
T Consensus 168 ~i~~av~~~r~~~-----~~~kIeVEv~------~lee-a~~a~~agaDiI~LDn~~~e--------------------- 214 (278)
T PRK08385 168 PLEEAIRRAKEFS-----VYKVVEVEVE------SLED-ALKAAKAGADIIMLDNMTPE--------------------- 214 (278)
T ss_pred HHHHHHHHHHHhC-----CCCcEEEEeC------CHHH-HHHHHHcCcCEEEECCCCHH---------------------
Confidence 4555555554321 2345655553 3333 34456799998888775321
Q ss_pred CccchHHHHHHHHHhc-CCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 376 LLSLSNNILKEMYLLT-RGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 376 l~~~al~~v~~i~~~~-~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
...+++..+++.- ++++.|.++||| +.+.+.++.++|+|.+.+++..
T Consensus 215 ---~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt 262 (278)
T PRK08385 215 ---EIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALT 262 (278)
T ss_pred ---HHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhh
Confidence 1223444444432 247899999999 7999999999999999888754
No 332
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=94.04 E-value=2.8 Score=39.21 Aligned_cols=122 Identities=12% Similarity=0.065 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEE--EecCCCChh
Q 012517 252 SEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLV--KIAPDLSKE 329 (462)
Q Consensus 252 t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~v--Kispdl~~~ 329 (462)
+.+ +..+.++.+.+..|.+|+++.- . + ..-.+.++.+++. ..+.|+.+ |+.. ..
T Consensus 11 ~~~---~~~~~~~~l~~~i~~ieig~~~--~---~-----~~g~~~i~~i~~~--------~~~~~i~~~~~v~~-~~-- 66 (202)
T cd04726 11 DLE---EALELAKKVPDGVDIIEAGTPL--I---K-----SEGMEAVRALREA--------FPDKIIVADLKTAD-AG-- 66 (202)
T ss_pred CHH---HHHHHHHHhhhcCCEEEcCCHH--H---H-----HhCHHHHHHHHHH--------CCCCEEEEEEEecc-cc--
Confidence 455 5666777777779999996421 0 0 0113555666543 13678887 6652 11
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE-ecCCCCHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG-CGGISSGED 408 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg-~GGI~s~~d 408 (462)
...++.+.++|+|+|+++..... ....++++.+++. +++++. +=+..|+++
T Consensus 67 --~~~~~~~~~aGad~i~~h~~~~~-----------------------~~~~~~i~~~~~~---g~~~~v~~~~~~t~~e 118 (202)
T cd04726 67 --ALEAEMAFKAGADIVTVLGAAPL-----------------------STIKKAVKAAKKY---GKEVQVDLIGVEDPEK 118 (202)
T ss_pred --HHHHHHHHhcCCCEEEEEeeCCH-----------------------HHHHHHHHHHHHc---CCeEEEEEeCCCCHHH
Confidence 24568889999999998743210 0123455555543 455555 478999999
Q ss_pred HHHHHHhCCCEEEEchh
Q 012517 409 AYRKIRAGATLVQLYTA 425 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Ta 425 (462)
+.+.+..|+|.|.++.+
T Consensus 119 ~~~~~~~~~d~v~~~~~ 135 (202)
T cd04726 119 RAKLLKLGVDIVILHRG 135 (202)
T ss_pred HHHHHHCCCCEEEEcCc
Confidence 99988889999988643
No 333
>PRK08227 autoinducer 2 aldolase; Validated
Probab=94.01 E-value=3.2 Score=41.47 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=84.8
Q ss_pred CcEEEEe--ccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC---CCh--hhHHHHHHHHHHcC
Q 012517 270 ADYLVIN--VSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD---LSK--EDLEDIAAVAVALR 342 (462)
Q Consensus 270 aD~leiN--vSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd---l~~--~~~~~ia~~~~~~G 342 (462)
||++-++ +.|++ +.+.+.+ +..|.+++++. ..|+++ +.|- ..+ +-+.--++.+.|.|
T Consensus 108 AdAV~~~v~~Gs~~--------E~~~l~~-l~~v~~ea~~~------G~Plla-~~prG~~~~~~~~~ia~aaRiaaELG 171 (264)
T PRK08227 108 ACAVAAQVFIGSEY--------EHQSIKN-IIQLVDAGLRY------GMPVMA-VTAVGKDMVRDARYFSLATRIAAEMG 171 (264)
T ss_pred CCEEEEEEecCCHH--------HHHHHHH-HHHHHHHHHHh------CCcEEE-EecCCCCcCchHHHHHHHHHHHHHHc
Confidence 8887764 44321 2233444 34444555543 689998 6553 221 23556667778999
Q ss_pred CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC-HHH----HHHHHHhCC
Q 012517 343 LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS-GED----AYRKIRAGA 417 (462)
Q Consensus 343 vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s-~~d----A~e~i~aGA 417 (462)
+|-|-+--| | +..+++-+.+ .+||+..||=.. -+| +++.|++||
T Consensus 172 ADiVK~~y~---------------------~--------~~f~~vv~a~--~vPVviaGG~k~~~~~~L~~v~~ai~aGa 220 (264)
T PRK08227 172 AQIIKTYYV---------------------E--------EGFERITAGC--PVPIVIAGGKKLPERDALEMCYQAIDEGA 220 (264)
T ss_pred CCEEecCCC---------------------H--------HHHHHHHHcC--CCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 998753211 0 2345566666 589999999773 333 455667999
Q ss_pred CEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCCCHHHhhc
Q 012517 418 TLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVG 458 (462)
Q Consensus 418 d~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~si~e~~G 458 (462)
..|.++|=+. |-++ +.++.+.+.... |+-.|++|+.-
T Consensus 221 ~Gv~~GRNIf-Q~~~-p~~~~~al~~IV--h~~~s~~eA~~ 257 (264)
T PRK08227 221 SGVDMGRNIF-QSEH-PVAMIKAVHAVV--HENETAKEAYE 257 (264)
T ss_pred ceeeechhhh-ccCC-HHHHHHHHHHHH--hCCCCHHHHHH
Confidence 9999999985 4444 556666666654 33358887753
No 334
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=93.99 E-value=0.92 Score=47.67 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=69.8
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCc--c-CC-----CCCCCC-----------C-----cccccCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTI--S-RP-----DPVSKN-----------P-----VAKETGG 370 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~--~-r~-----~~~~~~-----------~-----~~~~~GG 370 (462)
+-|.|.++-..-+.+...++++.++++|+.+|++|=-+. + |. ...+.. + ......+
T Consensus 137 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (383)
T cd03332 137 DAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGE 216 (383)
T ss_pred CCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCC
Confidence 358999987766667889999999999999999981110 0 10 000000 0 0000000
Q ss_pred -CC-------C-C-----cC-ccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 012517 371 -LS-------G-K-----PL-LSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 371 -lS-------G-~-----~l-~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~T 424 (462)
.. + . -+ ...+.+.++.+++.+ ++|||.- ||.+.+||...+++|+|.|.+.-
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 217 DPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 00 0 0 00 124678899999998 6887755 89999999999999999998763
No 335
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.94 E-value=8.1 Score=39.17 Aligned_cols=150 Identities=17% Similarity=0.103 Sum_probs=80.0
Q ss_pred eEEEEec-CCCCCHHHHHHHHHHHHHHcccCcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCC
Q 012517 241 ILGVNIG-KNKTSEDAAADYVQGVHTLSQYADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPP 317 (462)
Q Consensus 241 ~lgvnig-~nk~t~~~~~dy~~~~~~l~~~aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~P 317 (462)
||.+.+- +.. ++..+...++.+.+++ +-+|.| .+ .|-.+|...-+.--...+.++.|+.+++.. .+.+
T Consensus 80 PviaD~d~GyG-~~~~v~r~V~~~~~aG--aagi~IEDq~-~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~-----~~~d 150 (292)
T PRK11320 80 PLLVDIDTGFG-GAFNIARTVKSMIKAG--AAAVHIEDQV-GAKRCGHRPNKEIVSQEEMVDRIKAAVDAR-----TDPD 150 (292)
T ss_pred CEEEECCCCCC-CHHHHHHHHHHHHHcC--CeEEEEecCC-CccccCCCCCCcccCHHHHHHHHHHHHHhc-----cCCC
Confidence 6777762 112 4554444444444444 666555 33 243333321111122334444554444321 1344
Q ss_pred EEEEecCC----CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC
Q 012517 318 LLVKIAPD----LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG 393 (462)
Q Consensus 318 v~vKispd----l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~ 393 (462)
++|=-+.| ...++..+=+++..++|+|+|.+... .+.+.++++.+.+
T Consensus 151 ~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~---------------------------~~~~~i~~~~~~~-- 201 (292)
T PRK11320 151 FVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM---------------------------TELEMYRRFADAV-- 201 (292)
T ss_pred eEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC---------------------------CCHHHHHHHHHhc--
Confidence 55533333 12345555577788999999976421 1457778888888
Q ss_pred CccEE---EecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 394 KIPLI---GCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 394 ~ipII---g~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+.|++ ..+|-.-.-+..++-++|.+.|-++..++.
T Consensus 202 ~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~ 239 (292)
T PRK11320 202 KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFR 239 (292)
T ss_pred CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHH
Confidence 46773 334432222455677789999998887754
No 336
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.94 E-value=11 Score=40.92 Aligned_cols=157 Identities=16% Similarity=0.178 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCC--CEEEEecCCCChhhH
Q 012517 254 DAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPP--PLLVKIAPDLSKEDL 331 (462)
Q Consensus 254 ~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~--Pv~vKispdl~~~~~ 331 (462)
+-++.|++.+...+ .|.+-| .+| +.+.+.+...+++++++- ... -|..=++|-.+.+.+
T Consensus 97 dvv~~fv~~a~~~G--idi~RI--fd~-------lndv~nl~~ai~~vk~ag--------~~~~~~i~yt~sp~~t~e~~ 157 (499)
T PRK12330 97 EVVDRFVEKSAENG--MDVFRV--FDA-------LNDPRNLEHAMKAVKKVG--------KHAQGTICYTVSPIHTVEGF 157 (499)
T ss_pred hHHHHHHHHHHHcC--CCEEEE--Eec-------CChHHHHHHHHHHHHHhC--------CeEEEEEEEecCCCCCHHHH
Confidence 44567776665554 787554 222 123355666677776652 111 122233777777889
Q ss_pred HHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC---HHH
Q 012517 332 EDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS---GED 408 (462)
Q Consensus 332 ~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s---~~d 408 (462)
.++++.+.+.|+|-|.+..|. |+. ......++++.+++.++.++||-.=.==+. ..-
T Consensus 158 ~~~a~~l~~~Gad~I~IkDta-----------------Gll---~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An 217 (499)
T PRK12330 158 VEQAKRLLDMGADSICIKDMA-----------------ALL---KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVS 217 (499)
T ss_pred HHHHHHHHHcCCCEEEeCCCc-----------------cCC---CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHH
Confidence 999999999999999887664 111 112366888999998854688755443222 334
Q ss_pred HHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 409 AYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
.++.+++||+.|...-.=+-.+++- --.+.+...|+..|+.
T Consensus 218 ~laAieAGad~vDtai~Glg~~aGn--~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 218 LMKAIEAGVDVVDTAISSMSLGPGH--NPTESLVEMLEGTGYT 258 (499)
T ss_pred HHHHHHcCCCEEEeecccccccccc--hhHHHHHHHHHhcCCC
Confidence 6677889999988765443334442 2234445555555654
No 337
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.92 E-value=0.51 Score=47.27 Aligned_cols=99 Identities=19% Similarity=0.313 Sum_probs=66.1
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+.++++.+.+.|+|||++..|+-.-. -|| .+.-.++++.+.+..++++|||+.=|=.+
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~-------------~Lt----~~Er~~l~~~~~~~~~~~~~vi~gv~~~s 81 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGSTGEFY-------------SLT----DEERKELLEIVVEAAAGRVPVIAGVGANS 81 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESSTTTTGG-------------GS-----HHHHHHHHHHHHHHHTTSSEEEEEEESSS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccc-------------cCC----HHHHHHHHHHHHHHccCceEEEecCcchh
Confidence 5567899999999999999999887763210 011 12235667777787888898777666667
Q ss_pred HHHHHHHH----HhCCCEEEEchhhhhcCCChHHHHHHHHHH
Q 012517 406 GEDAYRKI----RAGATLVQLYTAFAYGGPALIPQIKAELAE 443 (462)
Q Consensus 406 ~~dA~e~i----~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~ 443 (462)
-+++.+.. ++|||.|++...+.+ .+. -+.+.+-.++
T Consensus 82 t~~~i~~a~~a~~~Gad~v~v~~P~~~-~~s-~~~l~~y~~~ 121 (289)
T PF00701_consen 82 TEEAIELARHAQDAGADAVLVIPPYYF-KPS-QEELIDYFRA 121 (289)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEESTSS-SCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCceEEEEeccccc-cch-hhHHHHHHHH
Confidence 77777766 489999999999754 343 4444443333
No 338
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.90 E-value=0.31 Score=46.77 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=71.4
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE
Q 012517 319 LVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI 398 (462)
Q Consensus 319 ~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII 398 (462)
++||-||-. +++.++++.+.++|+|+|.+..++- .. .....++++.+++.+ ++|||
T Consensus 2 ~~~iDP~k~-e~~~~ia~~v~~~gtDaI~VGGS~g-vt--------------------~~~~~~~v~~ik~~~--~lPvi 57 (205)
T TIGR01769 2 FTLIDPEKS-DEIEKIAKNAKDAGTDAIMVGGSLG-IV--------------------ESNLDQTVKKIKKIT--NLPVI 57 (205)
T ss_pred ccccCCCcH-HHHHHHHHHHHhcCCCEEEEcCcCC-CC--------------------HHHHHHHHHHHHhhc--CCCEE
Confidence 468888866 7888999999999999999987641 10 122456788888877 79988
Q ss_pred E-ecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcC
Q 012517 399 G-CGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDG 449 (462)
Q Consensus 399 g-~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G 449 (462)
- .|... .+.-+||++-+-+-+=-++|.|+-.....-.-.+++.|
T Consensus 58 lfp~~~~-------~i~~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~ 102 (205)
T TIGR01769 58 LFPGNVN-------GLSRYADAVFFMSLLNSADTYFIVGAQILGAITILKLN 102 (205)
T ss_pred EECCCcc-------ccCcCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcC
Confidence 4 44332 23467999998887766789988777555554455555
No 339
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=93.90 E-value=2 Score=43.32 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCC
Q 012517 294 LKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSG 373 (462)
Q Consensus 294 l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG 373 (462)
+.+++..++...+. ...||++-+-...+..++...++.+.++|+.||.+=..+... .....|+-..
T Consensus 63 ~~e~~~~~~~I~~a------~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk--------~cg~~~~~~~ 128 (285)
T TIGR02320 63 WTQRLDVVEFMFDV------TTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLK--------KNSLFGNDVA 128 (285)
T ss_pred HHHHHHHHHHHHhh------cCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCc--------cccccCCCCc
Confidence 34555555444332 478999988766555678888999999999999884332100 0001122111
Q ss_pred CcCccc--hHHHHHHHHHh-cCCCccEEEe----cCCCCHHHHHHH----HHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 374 KPLLSL--SNNILKEMYLL-TRGKIPLIGC----GGISSGEDAYRK----IRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 374 ~~l~~~--al~~v~~i~~~-~~~~ipIIg~----GGI~s~~dA~e~----i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
..+.+. ..+.|+.+++. .+.+++||+= -.-...++|++. .++|||+|.+-... ..+.-+.++.+.+
T Consensus 129 ~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~~~ 205 (285)
T TIGR02320 129 QPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFARRF 205 (285)
T ss_pred ccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHHh
Confidence 122222 23444444443 3456888776 222346676654 46899999986221 2344555555554
No 340
>PRK06852 aldolase; Validated
Probab=93.84 E-value=4.8 Score=41.04 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=85.7
Q ss_pred CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecC---CC----ChhhHHHHHHHHHHcC
Q 012517 270 ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAP---DL----SKEDLEDIAAVAVALR 342 (462)
Q Consensus 270 aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKisp---dl----~~~~~~~ia~~~~~~G 342 (462)
||++-+++. +| +-...+.+.++ ..|.+++++. ..|+++=+-| .+ +.+-+...++.+.+.|
T Consensus 135 AdAV~v~v~----~G--s~~E~~ml~~l-~~v~~ea~~~------GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELG 201 (304)
T PRK06852 135 ILGVGYTIY----LG--SEYESEMLSEA-AQIIYEAHKH------GLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLG 201 (304)
T ss_pred ceEEEEEEe----cC--CHHHHHHHHHH-HHHHHHHHHh------CCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHc
Confidence 788776542 11 11122344443 3344444443 6898873222 12 2235677778889999
Q ss_pred CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC-CHHHH----HHHHH-hC
Q 012517 343 LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS-SGEDA----YRKIR-AG 416 (462)
Q Consensus 343 vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~-s~~dA----~e~i~-aG 416 (462)
+|-|-+--|+ .. .+| ..+..+++-+.++ .+||+..||=. +.+|. ++.|+ +|
T Consensus 202 ADIVKv~y~~-~~------------~~g---------~~e~f~~vv~~~g-~vpVviaGG~k~~~~e~L~~v~~ai~~aG 258 (304)
T PRK06852 202 ADFVKVNYPK-KE------------GAN---------PAELFKEAVLAAG-RTKVVCAGGSSTDPEEFLKQLYEQIHISG 258 (304)
T ss_pred CCEEEecCCC-cC------------CCC---------CHHHHHHHHHhCC-CCcEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 9988765443 11 001 1244555656553 58988888866 44444 44556 89
Q ss_pred CCEEEEchhhhhcCCCh-HHHHHHHHHHHHHHcCCCCHHHhh
Q 012517 417 ATLVQLYTAFAYGGPAL-IPQIKAELAECLERDGFKSIIEAV 457 (462)
Q Consensus 417 Ad~Vqv~Tali~~GP~~-i~~i~~~L~~~l~~~G~~si~e~~ 457 (462)
|..|.++|=+. |-|.- ..++.+.+.... |+=.|++|+.
T Consensus 259 a~Gv~~GRNIf-Q~~~p~~~~~~~Ai~~IV--H~~~s~~eA~ 297 (304)
T PRK06852 259 ASGNATGRNIH-QKPLDEAVRMCNAIYAIT--VEDKSVEEAL 297 (304)
T ss_pred Cceeeechhhh-cCCCchHHHHHHHHHHHH--hCCCCHHHHH
Confidence 99999999884 44431 355666666554 4446877764
No 341
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=93.81 E-value=2.5 Score=42.07 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=59.6
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ .+|.+.+|=|+ |.-.....+.-.++++.+.+.+ ..+.||++=++.. +.++..++++
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~Gst----GE~~~lt~~Er~~l~~~~~~~~-------~~~~~vi~gv~~~-~~~~~~~~a~ 89 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTT----GESPTLSDEEHEAVIEAVVEAV-------NGRVPVIAGTGSN-NTAEAIELTK 89 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCC----cchhhCCHHHHHHHHHHHHHHh-------CCCCcEEeccCCc-cHHHHHHHHH
Confidence 45555555544 59999998543 3333445566677888777765 2468999988863 4468899999
Q ss_pred HHHHcCCcEEEEecCCc
Q 012517 337 VAVALRLDGLIISNTTI 353 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~ 353 (462)
.+++.|+|+|.+.....
T Consensus 90 ~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 90 RAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHcCCCEEEEccccc
Confidence 99999999999986543
No 342
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=93.79 E-value=5.3 Score=40.26 Aligned_cols=86 Identities=8% Similarity=0.038 Sum_probs=58.1
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ .+|.|.++=|+ |.-.....+.-.++++.+.+.+ ..++||++=+... +.++..++++
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~Gst----GE~~~Ls~~Er~~l~~~~~~~~-------~g~~pvi~gv~~~-~t~~ai~~a~ 89 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTS----GEPGSLTLEERKQAIENAIDQI-------AGRIPFAPGTGAL-NHDETLELTK 89 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccC----cccccCCHHHHHHHHHHHHHHh-------CCCCcEEEECCcc-hHHHHHHHHH
Confidence 44444555443 48999987543 3333344455567777766654 2478999988764 3457789999
Q ss_pred HHHHcCCcEEEEecCCccC
Q 012517 337 VAVALRLDGLIISNTTISR 355 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r 355 (462)
.+++.|+|++.+....+..
T Consensus 90 ~A~~~Gad~v~v~pP~y~~ 108 (294)
T TIGR02313 90 FAEEAGADAAMVIVPYYNK 108 (294)
T ss_pred HHHHcCCCEEEEcCccCCC
Confidence 9999999999998765433
No 343
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.78 E-value=0.24 Score=52.29 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..+.++.+.++|+|.|++--+- |.| ....+.++++++.++ +++ +..|+|.|.++|
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~-----------------g~~-----~~~~~~v~~ik~~~p-~~~-vi~g~V~T~e~a 208 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAH-----------------GHS-----TRIIELVKKIKTKYP-NLD-LIAGNIVTKEAA 208 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC-----------------CCC-----hhHHHHHHHHHhhCC-CCc-EEEEecCCHHHH
Confidence 35678888999999998863221 111 124578899999886 455 567899999999
Q ss_pred HHHHHhCCCEEEEc
Q 012517 410 YRKIRAGATLVQLY 423 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~ 423 (462)
...+++|||.|.++
T Consensus 209 ~~l~~aGaD~I~vG 222 (404)
T PRK06843 209 LDLISVGADCLKVG 222 (404)
T ss_pred HHHHHcCCCEEEEC
Confidence 99999999999865
No 344
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=93.77 E-value=7 Score=38.99 Aligned_cols=155 Identities=14% Similarity=0.197 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHccc-CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEec-CCCChhhH
Q 012517 254 DAAADYVQGVHTLSQY-ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIA-PDLSKEDL 331 (462)
Q Consensus 254 ~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKis-pdl~~~~~ 331 (462)
+.++.+.+.++.+.++ .|++.|.-+. |.+ .+..-.++...+++. ..+|.++=++ -|.+..++
T Consensus 12 ~~~~~l~~~~~~l~~~~pd~isvT~~~----~~~---~~~~t~~~a~~l~~~---------~g~~~i~Hlt~r~~n~~~l 75 (272)
T TIGR00676 12 EGEENLWETVDRLSPLDPDFVSVTYGA----GGS---TRDRTVRIVRRIKKE---------TGIPTVPHLTCIGATREEI 75 (272)
T ss_pred hhHHHHHHHHHHHhcCCCCEEEeccCC----CCC---cHHHHHHHHHHHHHh---------cCCCeeEEeeecCCCHHHH
Confidence 3345788888888887 8999886532 111 122233455555433 2567777666 45666788
Q ss_pred HHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecC-------CC
Q 012517 332 EDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGG-------IS 404 (462)
Q Consensus 332 ~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GG-------I~ 404 (462)
.+....+.+.|++-|.+.-....... .-.-...++.+.++|+.+++..+ ++ -||+++ ..
T Consensus 76 ~~~L~~~~~~Gi~nvL~l~GD~~~~~------------~~~~~~~f~~a~~Li~~i~~~~~-~f-~ig~a~~Peghp~~~ 141 (272)
T TIGR00676 76 REILREYRELGIRHILALRGDPPKGE------------GTPTPGGFNYASELVEFIRNEFG-DF-DIGVAAYPEKHPEAP 141 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCCCC------------CCCCCCCCCCHHHHHHHHHHhcC-Ce-eEEEEeCCCCCCCCC
Confidence 99999999999998875433211100 00111224468899999987653 44 344444 33
Q ss_pred CHH----HHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 405 SGE----DAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 405 s~~----dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
+.+ -..+++++||+ .+-|-++| ++..+.++.+.+
T Consensus 142 ~~~~~~~~L~~K~~aGA~--f~iTQ~~f-d~~~~~~~~~~~ 179 (272)
T TIGR00676 142 NLEEDIENLKRKVDAGAD--YAITQLFF-DNDDYYRFVDRC 179 (272)
T ss_pred CHHHHHHHHHHHHHcCCC--eEeecccc-CHHHHHHHHHHH
Confidence 332 24577789999 45788877 577666666543
No 345
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=93.75 E-value=0.59 Score=50.70 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCC---EEEEchhhhh
Q 012517 380 SNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGAT---LVQLYTAFAY 428 (462)
Q Consensus 380 al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd---~Vqv~Tali~ 428 (462)
.++.++++.+.. ++||++.|||+ ++++.+.+++||+ .|.+.++++.
T Consensus 432 g~~~~~~~~~~~--~~Pv~aiGGI~-~~~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 432 GLDGLREVCEAS--KLPVVAIGGIS-ASNAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred CHHHHHHHHHcC--CCCEEEECCCC-HHHHHHHHHcCCCcCceEEEEeHHhc
Confidence 456777777776 79999999996 9999999999999 9999999963
No 346
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.74 E-value=5.9 Score=38.93 Aligned_cols=148 Identities=13% Similarity=0.065 Sum_probs=81.9
Q ss_pred eEEEEec-CCCCCHHHHHHHHHHHHHHcccCcEEEEecc-CCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCE
Q 012517 241 ILGVNIG-KNKTSEDAAADYVQGVHTLSQYADYLVINVS-SPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPL 318 (462)
Q Consensus 241 ~lgvnig-~nk~t~~~~~dy~~~~~~l~~~aD~leiNvS-sPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv 318 (462)
||.+.+- +...++..+..-++.+.+++ +..+.|.=. |-+ + .+.+...+...+=+++++++++ ..++-|
T Consensus 71 Pv~vD~d~GyG~~~~~v~~tv~~~~~aG--~agi~IEDq~~~~-~-~~~l~~~ee~~~kI~Aa~~a~~------~~~~~I 140 (238)
T PF13714_consen 71 PVIVDADTGYGNDPENVARTVRELERAG--AAGINIEDQRCGH-G-GKQLVSPEEMVAKIRAAVDARR------DPDFVI 140 (238)
T ss_dssp EEEEE-TTTSSSSHHHHHHHHHHHHHCT---SEEEEESBSTTT-S-TT-B--HHHHHHHHHHHHHHHS------STTSEE
T ss_pred cEEEEcccccCchhHHHHHHHHHHHHcC--CcEEEeeccccCC-C-CCceeCHHHHHHHHHHHHHhcc------CCeEEE
Confidence 7888872 11224664444444444444 777777544 433 2 2334444544455555555542 123444
Q ss_pred EEEecCCC----ChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 319 LVKIAPDL----SKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 319 ~vKispdl----~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
+.+.-.-. ..++..+=+++..++|+|+|.+... .+.+.++++.+.+ +
T Consensus 141 ~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~---------------------------~~~~~i~~~~~~~--~ 191 (238)
T PF13714_consen 141 IARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGL---------------------------QSEEEIERIVKAV--D 191 (238)
T ss_dssp EEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTS---------------------------SSHHHHHHHHHHH--S
T ss_pred EEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCC---------------------------CCHHHHHHHHHhc--C
Confidence 44543322 2235555566678999999876422 1345578888888 5
Q ss_pred ccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 395 ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
.|+...-+ ...-++.+.-+.|.+.|-++..++.
T Consensus 192 ~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 192 GPLNVNPG-PGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp SEEEEETT-SSSS-HHHHHHTTESEEEETSHHHH
T ss_pred CCEEEEcC-CCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 88777664 3237788888999999988777754
No 347
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=93.72 E-value=1.4 Score=44.61 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=59.9
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ .+|+|.+|=|+ |.-.....+.-.++++.+.+.+ ..++||++=++. +.++..++++
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~Gst----GE~~~Lt~eEr~~~~~~~~~~~-------~~~~pvi~gv~~--~t~~~i~~~~ 95 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGT----GEFFSLTPDEYSQVVRAAVETT-------AGRVPVIAGAGG--GTAQAIEYAQ 95 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCC----cCcccCCHHHHHHHHHHHHHHh-------CCCCcEEEecCC--CHHHHHHHHH
Confidence 45555555544 59999998653 3333334455567777776654 247899999974 5568899999
Q ss_pred HHHHcCCcEEEEecCCccC
Q 012517 337 VAVALRLDGLIISNTTISR 355 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r 355 (462)
.+++.|+|++.+....+.+
T Consensus 96 ~a~~~Gadav~~~pP~y~~ 114 (303)
T PRK03620 96 AAERAGADGILLLPPYLTE 114 (303)
T ss_pred HHHHhCCCEEEECCCCCCC
Confidence 9999999999998765443
No 348
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.68 E-value=8.8 Score=38.76 Aligned_cols=208 Identities=17% Similarity=0.106 Sum_probs=109.3
Q ss_pred CcEEeCCCCCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCchhHHHHHHHHHHhhccCc
Q 012517 137 NPLGLAAGFDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRK 216 (462)
Q Consensus 137 NPiglAAG~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~ 216 (462)
+|+.++.-+|--... -..+.||-++-+.+...--.-|-| |.+++ .++.+.+++++....
T Consensus 13 ~~l~~p~~~Da~SAr--i~e~aGf~Ai~~sg~~~a~~lG~p---------D~g~l--------t~~e~~~~~~~I~~~-- 71 (285)
T TIGR02317 13 DILQIPGAINAMAAL--LAERAGFEAIYLSGAAVAASLGLP---------DLGIT--------TLDEVAEDARRITRV-- 71 (285)
T ss_pred CcEEeCCCCCHHHHH--HHHHcCCCEEEEcHHHHHHhCCCC---------CCCCC--------CHHHHHHHHHHHHhc--
Confidence 455544456754333 255679999888775542222322 33332 345566655543221
Q ss_pred ccccccCCCCCCCcccCCCCCCCceEEEEe--cCCCCCHHHHHHHHHHHHHHcccCcEEEE--ecc---CCCCCCccccc
Q 012517 217 LDETSRTSSSPNDEVKAGGKAGPGILGVNI--GKNKTSEDAAADYVQGVHTLSQYADYLVI--NVS---SPNTPGLRMLQ 289 (462)
Q Consensus 217 ~~~~~~~~~~~~~~~p~~~~~~~~~lgvni--g~nk~t~~~~~dy~~~~~~l~~~aD~lei--NvS---sPnt~glr~lq 289 (462)
.+.||.+.+ |. . ++..+...++.+.+++ +.+|.| .++ |-+.+| +.+-
T Consensus 72 ---------------------~~iPviaD~d~Gy-G-~~~~v~~tv~~~~~aG--~agi~IEDq~~pK~cgh~~g-~~lv 125 (285)
T TIGR02317 72 ---------------------TDLPLLVDADTGF-G-EAFNVARTVREMEDAG--AAAVHIEDQVLPKRCGHLPG-KELV 125 (285)
T ss_pred ---------------------cCCCEEEECCCCC-C-CHHHHHHHHHHHHHcC--CeEEEEecCCCccccCCCCC-cccc
Confidence 123677776 22 1 2443333333333333 666665 332 223222 1222
Q ss_pred CchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCC----ChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcc
Q 012517 290 GRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDL----SKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVA 365 (462)
Q Consensus 290 ~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl----~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~ 365 (462)
..+...+-|+++++++ .+.+++|=-+.|. ..++..+=+++..++|+|+|.+...
T Consensus 126 ~~ee~~~kI~Aa~~a~--------~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~-------------- 183 (285)
T TIGR02317 126 SREEMVDKIAAAVDAK--------RDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL-------------- 183 (285)
T ss_pred CHHHHHHHHHHHHHhc--------cCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC--------------
Confidence 3333333344444432 1345555443331 2345555577778999999976421
Q ss_pred cccCCCCCCcCccchHHHHHHHHHhcCCCccEE---EecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 366 KETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI---GCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 366 ~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII---g~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
.+.+.++++.+.++ .|++ ..+|-+-.-++.++-++|.+.|-++..++.
T Consensus 184 -------------~~~e~i~~~~~~i~--~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~ 234 (285)
T TIGR02317 184 -------------TSLEEFRQFAKAVK--VPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFR 234 (285)
T ss_pred -------------CCHHHHHHHHHhcC--CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHH
Confidence 14567788888884 6773 334432223566777899999998887754
No 349
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.65 E-value=0.9 Score=45.46 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=59.3
Q ss_pred CCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC
Q 012517 325 DLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS 404 (462)
Q Consensus 325 dl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~ 404 (462)
+++.+.+.++++.+.+.|+|||.+..||-.-. -|| .+.-.++++.+.+..+ + .|.++|+ .
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~-------------~Lt----~eEr~~l~~~~~~~~~-~-vi~gvg~-~ 75 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTTGLGP-------------SLS----FQEKLELLKAYSDITD-K-VIFQVGS-L 75 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccCCCcc-------------cCC----HHHHHHHHHHHHHHcC-C-EEEEeCc-C
Confidence 36667899999999999999999887763221 111 1123466677777764 4 4777776 4
Q ss_pred CHHHHHHHH----HhCCCEEEEchhhhhc
Q 012517 405 SGEDAYRKI----RAGATLVQLYTAFAYG 429 (462)
Q Consensus 405 s~~dA~e~i----~aGAd~Vqv~Tali~~ 429 (462)
+.+|+.+.. ++|||.|++...+.+.
T Consensus 76 ~~~~ai~~a~~a~~~Gad~v~v~~P~y~~ 104 (279)
T cd00953 76 NLEESIELARAAKSFGIYAIASLPPYYFP 104 (279)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcCCC
Confidence 566666655 4799999999998553
No 350
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=93.65 E-value=9.9 Score=39.25 Aligned_cols=144 Identities=11% Similarity=0.052 Sum_probs=81.7
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLII 348 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIiv 348 (462)
..|.+.|-++|-. .+...+.++.+++. +..+-+.+=.++..+.+++.++++.+.+.|+|.|.+
T Consensus 101 gvd~iri~~~~~e---------~~~~~~~i~~ak~~--------G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 101 GVRVVRVATHCTE---------ADVSEQHIGLAREL--------GMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred CCCEEEEEEecch---------HHHHHHHHHHHHHC--------CCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 4888877665422 12344444444432 222222233345567789999999999999999988
Q ss_pred ecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC---CHHHHHHHHHhCCCEEEEchh
Q 012517 349 SNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS---SGEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 349 sNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~---s~~dA~e~i~aGAd~Vqv~Ta 425 (462)
..|.-. + ......+.++.+++.+++++||-.=+==+ ...-+++++++||+.|...-.
T Consensus 164 ~DT~G~----------------~----~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~ 223 (337)
T PRK08195 164 VDSAGA----------------L----LPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLA 223 (337)
T ss_pred CCCCCC----------------C----CHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecCh
Confidence 877521 1 11235577888888885567763332211 134567788899996654422
Q ss_pred hhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 426 FAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 426 li~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
=+=+|.+ +--.+.+...|++.|+.
T Consensus 224 GlG~~aG--N~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 224 GLGAGAG--NTPLEVLVAVLDRMGWE 247 (337)
T ss_pred hhccccc--CccHHHHHHHHHhcCCC
Confidence 2212222 12234445566666664
No 351
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=93.62 E-value=2.3 Score=41.98 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHHccc-CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChh
Q 012517 251 TSEDAAADYVQGVHTLSQY-ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKE 329 (462)
Q Consensus 251 ~t~~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~ 329 (462)
.|+++.+.+.+-++.+.+. +|.+++-+..|+.. -+.+.+.+|++.. ...|+.+--+-|...
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~-----vD~~~~~~Li~~a------------~~~~vTFHRAfD~~~- 128 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGH-----VDMPRMRKIMAAA------------GPLAVTFHRAFDMCA- 128 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCC-----cCHHHHHHHHHHh------------cCCceEEechhhccC-
Confidence 4677777676666666663 99999988766532 2445566665553 257888888888764
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..+-.+.+.+.|++.|.-+... .+ -...++.++++.+..++.+ |+.-|||+ .+.+
T Consensus 129 d~~~al~~l~~lG~~rILTSGg~-------------------~~---a~~g~~~L~~lv~~a~~~~-Im~GgGV~-~~Nv 184 (248)
T PRK11572 129 NPLNALKQLADLGVARILTSGQQ-------------------QD---AEQGLSLIMELIAASDGPI-IMAGAGVR-LSNL 184 (248)
T ss_pred CHHHHHHHHHHcCCCEEECCCCC-------------------CC---HHHHHHHHHHHHHhcCCCE-EEeCCCCC-HHHH
Confidence 44466788888999988533221 10 1123566677766665545 78888886 7778
Q ss_pred HHHHHhCCCEEEEc
Q 012517 410 YRKIRAGATLVQLY 423 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~ 423 (462)
.+.+.+|+.-+-..
T Consensus 185 ~~l~~tG~~~~H~s 198 (248)
T PRK11572 185 HKFLDAGVREVHSS 198 (248)
T ss_pred HHHHHcCCCEEeeC
Confidence 88888998877654
No 352
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=93.58 E-value=1.9 Score=40.54 Aligned_cols=119 Identities=12% Similarity=0.078 Sum_probs=68.4
Q ss_pred HHHHHHHHHcc-cCcEEEEec-cCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCE--EEEecCCCChhhHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINV-SSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPL--LVKIAPDLSKEDLED 333 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNv-SsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv--~vKispdl~~~~~~~ 333 (462)
.+.+.++.+.+ .+|+|++.+ ..|-.+++. .-.++++++++. .+.|+ -++... ..+
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~------~~~~~v~~i~~~---------~~~~v~v~lm~~~------~~~ 70 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLT------FGPPVLEALRKY---------TDLPIDVHLMVEN------PDR 70 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcc------cCHHHHHHHHhc---------CCCcEEEEeeeCC------HHH
Confidence 44555555555 399999973 333323221 223556666542 24564 356552 346
Q ss_pred HHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHH
Q 012517 334 IAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKI 413 (462)
Q Consensus 334 ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i 413 (462)
+++.+.+.|+|||+++... .+...+.++.+++.- --++++ -...+..+..+.+
T Consensus 71 ~~~~~~~~gadgv~vh~~~------------------------~~~~~~~~~~~~~~g--~~~~~~-~~~~t~~e~~~~~ 123 (210)
T TIGR01163 71 YIEDFAEAGADIITVHPEA------------------------SEHIHRLLQLIKDLG--AKAGIV-LNPATPLEFLEYV 123 (210)
T ss_pred HHHHHHHcCCCEEEEccCC------------------------chhHHHHHHHHHHcC--CcEEEE-ECCCCCHHHHHHH
Confidence 6888889999999885321 011234555555542 122333 3455667777777
Q ss_pred HhCCCEEEEch
Q 012517 414 RAGATLVQLYT 424 (462)
Q Consensus 414 ~aGAd~Vqv~T 424 (462)
..++|.+++.+
T Consensus 124 ~~~~d~i~~~~ 134 (210)
T TIGR01163 124 LPDVDLVLLMS 134 (210)
T ss_pred HhhCCEEEEEE
Confidence 78899988754
No 353
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=93.54 E-value=0.89 Score=45.63 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=60.4
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
++.+.+..+++.+.+.|++||.+..++-.-. -+| .+.-.++++.+.+.+++++|||+.=|=.+
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~-------------~ls----~~Er~~~~~~~~~~~~~~~~vi~gv~~~~ 81 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGESP-------------TLT----HEEHEELIRAVVEAVNGRVPVIAGTGSNS 81 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCccc-------------cCC----HHHHHHHHHHHHHHhCCCCcEEeecCCch
Confidence 5667899999999999999999866552211 011 11234667777788877888765444456
Q ss_pred HHHHHHHH----HhCCCEEEEchhhhh
Q 012517 406 GEDAYRKI----RAGATLVQLYTAFAY 428 (462)
Q Consensus 406 ~~dA~e~i----~aGAd~Vqv~Tali~ 428 (462)
.+++.+.. ++|||.|++.....+
T Consensus 82 ~~~~i~~a~~a~~~G~d~v~~~pP~~~ 108 (292)
T PRK03170 82 TAEAIELTKFAEKAGADGALVVTPYYN 108 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 77777665 479999999988754
No 354
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=93.49 E-value=0.89 Score=45.41 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=28.7
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
++||.++|||+ .+.+.++.++|||.+.++ ++.+
T Consensus 227 ~i~i~asGGIt-~~ni~~~a~~Gad~Isvg-al~~ 259 (269)
T cd01568 227 RVLLEASGGIT-LENIRAYAETGVDVISTG-ALTH 259 (269)
T ss_pred CeEEEEECCCC-HHHHHHHHHcCCCEEEEc-HHHc
Confidence 79999999997 999999999999999884 4433
No 355
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.39 E-value=0.53 Score=47.55 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCC
Q 012517 294 LKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSG 373 (462)
Q Consensus 294 l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG 373 (462)
...+.++|++.+... ....+|.|-+ + .+++ +..+.++|+|.|-+-|-++
T Consensus 180 ~g~i~~av~~~r~~~----~~~~kIeVEv----~--tlee-a~~a~~agaDiImLDnmsp-------------------- 228 (290)
T PRK06559 180 VGSVQKAIAQARAYA----PFVKMVEVEV----E--SLAA-AEEAAAAGADIIMLDNMSL-------------------- 228 (290)
T ss_pred hccHHHHHHHHHHhC----CCCCeEEEEC----C--CHHH-HHHHHHcCCCEEEECCCCH--------------------
Confidence 335566666665322 1123344433 2 3333 4445578999998877542
Q ss_pred CcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 374 KPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 374 ~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
+.++++.+.+++++.+.++|||+ .+.+.++...|+|.+.++.-.
T Consensus 229 --------e~l~~av~~~~~~~~leaSGGI~-~~ni~~yA~tGVD~Is~galt 272 (290)
T PRK06559 229 --------EQIEQAITLIAGRSRIECSGNID-MTTISRFRGLAIDYVSSGSLT 272 (290)
T ss_pred --------HHHHHHHHHhcCceEEEEECCCC-HHHHHHHHhcCCCEEEeCccc
Confidence 33444444445578999999996 999999999999999887744
No 356
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=93.34 E-value=1.6 Score=45.59 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=63.2
Q ss_pred eEEEEecCCC--CCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCC
Q 012517 241 ILGVNIGKNK--TSEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPP 317 (462)
Q Consensus 241 ~lgvnig~nk--~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~P 317 (462)
|+...+-|.+ .+++ .|.+.+..+.. .+|.|-.+=+.-+.+ .+...+.+..+.++++++.++. +.+++
T Consensus 131 Pli~Ti~kp~~gld~~---~la~~~~~l~~gGvD~Ikdde~~ge~~---~~~~eER~~~v~~av~~a~~~T----G~~~~ 200 (367)
T cd08205 131 PLLGTIIKPSIGLSPE---ELAELAYELALGGIDLIKDDELLADQP---YAPFEERVRACMEAVRRANEET----GRKTL 200 (367)
T ss_pred CeeeeeeCCCCCCCHH---HHHHHHHHHHhcCCCeeeccccccCcc---cCCHHHHHHHHHHHHHHHHHhh----CCcce
Confidence 5556665532 3455 78888887766 489987653332222 1122233444444444443322 45677
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCcc
Q 012517 318 LLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS 354 (462)
Q Consensus 318 v~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~ 354 (462)
+++=++.+. +++.+.++.+.+.|+|++.+..-...
T Consensus 201 y~~nit~~~--~e~i~~a~~a~~~Gad~vmv~~~~~g 235 (367)
T cd08205 201 YAPNITGDP--DELRRRADRAVEAGANALLINPNLVG 235 (367)
T ss_pred EEEEcCCCH--HHHHHHHHHHHHcCCCEEEEeccccc
Confidence 778887653 68999999999999999988765543
No 357
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.33 E-value=0.53 Score=44.30 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=72.7
Q ss_pred CEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCcc
Q 012517 317 PLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIP 396 (462)
Q Consensus 317 Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ip 396 (462)
|++.=++.+ +.++..++++.+.+.|++.|-++.++. ...+.++++++..+ -.
T Consensus 5 ~~~~i~r~~-~~~~~~~~~~~l~~~G~~~vev~~~~~-------------------------~~~~~i~~l~~~~~--~~ 56 (190)
T cd00452 5 PLVAVLRGD-DAEDALALAEALIEGGIRAIEITLRTP-------------------------GALEAIRALRKEFP--EA 56 (190)
T ss_pred cEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEeCCCh-------------------------hHHHHHHHHHHHCC--CC
Confidence 444444433 456889999999999999998875421 14567888888874 36
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCCCHHHhh
Q 012517 397 LIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAV 457 (462)
Q Consensus 397 IIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~si~e~~ 457 (462)
.||.|-|.+.+++.+.+++||+.+.+... ++.+++..++ + ...-.-|..|.+|+.
T Consensus 57 ~iGag~v~~~~~~~~a~~~Ga~~i~~p~~----~~~~~~~~~~-~-~~~~i~gv~t~~e~~ 111 (190)
T cd00452 57 LIGAGTVLTPEQADAAIAAGAQFIVSPGL----DPEVVKAANR-A-GIPLLPGVATPTEIM 111 (190)
T ss_pred EEEEEeCCCHHHHHHHHHcCCCEEEcCCC----CHHHHHHHHH-c-CCcEECCcCCHHHHH
Confidence 79999999999999999999999975421 2333333332 1 111124666777654
No 358
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.33 E-value=2.5 Score=40.49 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhccCCCCCCCEEEEecCC-----CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCC
Q 012517 296 DLVKKVQAARDEMQWGEEGPPPLLVKIAPD-----LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGG 370 (462)
Q Consensus 296 ~ll~aV~~~~~~~~~~~~~~~Pv~vKispd-----l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GG 370 (462)
+.++++++. .+.|++..+.-| +-.....+.++.+.++|+|.|++......++. |
T Consensus 46 ~~i~~i~~~---------~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~-----------~- 104 (221)
T PRK01130 46 EDIKAIRAV---------VDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPD-----------G- 104 (221)
T ss_pred HHHHHHHHh---------CCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCC-----------C-
Confidence 455666654 368987554422 11111234568889999997666433211100 0
Q ss_pred CCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 371 LSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 371 lSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
....++++++++. . .++++. ++.+.+++.+..++|+|.+.+.
T Consensus 105 -------~~~~~~i~~~~~~-~-~i~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 105 -------ETLAELVKRIKEY-P-GQLLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred -------CCHHHHHHHHHhC-C-CCeEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 1234677777765 2 577774 6889999999999999999763
No 359
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=93.29 E-value=1.9 Score=43.34 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=58.6
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ .+|.|.++=|+ |.-.....+.-.++++.+.+.. ..++||++=+.. +.++..++++
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~Gst----GE~~~Ls~eEr~~l~~~~~~~~-------~~~~pvi~gv~~--~t~~~i~~a~ 88 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGT----GEFFSLTPDEYAQVVRAAVEET-------AGRVPVLAGAGY--GTATAIAYAQ 88 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCC----cCcccCCHHHHHHHHHHHHHHh-------CCCCCEEEecCC--CHHHHHHHHH
Confidence 45555555544 49999998653 2222334455556677666654 247899999874 4568889999
Q ss_pred HHHHcCCcEEEEecCCccC
Q 012517 337 VAVALRLDGLIISNTTISR 355 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r 355 (462)
.+++.|+|++.+....+..
T Consensus 89 ~a~~~Gad~v~~~pP~y~~ 107 (289)
T cd00951 89 AAEKAGADGILLLPPYLTE 107 (289)
T ss_pred HHHHhCCCEEEECCCCCCC
Confidence 9999999999998765543
No 360
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=93.27 E-value=1.7 Score=44.02 Aligned_cols=127 Identities=13% Similarity=0.158 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCCh-hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCC
Q 012517 294 LKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSK-EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLS 372 (462)
Q Consensus 294 l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~-~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlS 372 (462)
+.+++..+++.++. .++||++-+-..... .++...++.++++|+.||.+-..+.. ...|.+.
T Consensus 62 ~~e~~~~~~~I~~~------~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~p-----------K~cg~~~ 124 (294)
T TIGR02319 62 VSEQAINAKNIVLA------VDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNP-----------KRCGHLE 124 (294)
T ss_pred HHHHHHHHHHHHhc------cCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCc-----------cccCCCC
Confidence 45666666665542 479999999766543 35677889999999999988654321 1234455
Q ss_pred CCcCccchHHHHHHHHHhc---C-CCccEEEecC---CCCHHHHHHHH----HhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 373 GKPLLSLSNNILKEMYLLT---R-GKIPLIGCGG---ISSGEDAYRKI----RAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 373 G~~l~~~al~~v~~i~~~~---~-~~ipIIg~GG---I~s~~dA~e~i----~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
|+++.+.. +.+.+|+... . .++-|++=-- ....++|++.. ++|||+|.+-. + ..++.++++.+++
T Consensus 125 ~k~lv~~e-e~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~-~--~~~~ei~~~~~~~ 200 (294)
T TIGR02319 125 GKRLISTE-EMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEA-M--LDVEEMKRVRDEI 200 (294)
T ss_pred CccccCHH-HHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC-C--CCHHHHHHHHHhc
Confidence 66665542 5555554433 1 1233433211 12356666544 69999998854 2 3566677777665
No 361
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=93.23 E-value=4 Score=43.33 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=74.8
Q ss_pred CcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCC--CCCHHHHHHHHHHHHH
Q 012517 188 GAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKN--KTSEDAAADYVQGVHT 265 (462)
Q Consensus 188 ~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~n--k~t~~~~~dy~~~~~~ 265 (462)
..++.++.=+.-|++-+.+.+... ..|+..+|-|. ..+++ +|++.+.+
T Consensus 119 ~~~~~~f~GP~fGi~G~R~~lgv~---------------------------~RPL~gtiiKP~~Glsp~---~~a~~~~~ 168 (412)
T TIGR03326 119 AEFLRHFKGPQFGIEGVREFLGIK---------------------------DRPLLGTVPKPKVGLSTE---EHAKVAYE 168 (412)
T ss_pred HHHHhcCCCCCCCchhHHHHhCCC---------------------------CCceEEeeccccccCChH---HHHHHHHH
Confidence 346666666666776655544321 13566666665 34676 78888888
Q ss_pred Hccc-CcEEEEe--ccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcC
Q 012517 266 LSQY-ADYLVIN--VSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 266 l~~~-aD~leiN--vSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~G 342 (462)
+... .|+|-=. +..|-.. .-.+.+..+.++++++.++. +.++-..+-|+-+. +++.+-++.+.+.|
T Consensus 169 ~~~GGvD~IKDDE~l~~q~~~-----p~~eRv~~~~~a~~~a~~eT----G~~~~ya~NiT~~~--~em~~ra~~~~~~G 237 (412)
T TIGR03326 169 LWSGGVDLLKDDENLTSQPFN-----RFEERVEKLYKVRDKVEAET----GERKEYLANITAPV--REMERRAELVADLG 237 (412)
T ss_pred HHhcCCceeecCCCCCCCCCc-----cHHHHHHHHHHHHHHHHHHh----CCcceEEEEecCCH--HHHHHHHHHHHHhC
Confidence 8764 7887642 2221110 11245666666666665544 44555677777663 58999999999999
Q ss_pred CcEEEEe
Q 012517 343 LDGLIIS 349 (462)
Q Consensus 343 vdgIivs 349 (462)
+.++.+.
T Consensus 238 ~~~~mv~ 244 (412)
T TIGR03326 238 GQYVMVD 244 (412)
T ss_pred CCeEEEE
Confidence 9987654
No 362
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.16 E-value=0.54 Score=47.32 Aligned_cols=91 Identities=20% Similarity=0.266 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCc
Q 012517 296 DLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKP 375 (462)
Q Consensus 296 ~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~ 375 (462)
.+.++|++.++.. ...++|.|=+. .+++ +..+.+.|+|.|-+-|-+
T Consensus 179 ~i~~ai~~~r~~~----~~~~kIeVEv~------tlee-a~ea~~~gaDiI~LDn~s----------------------- 224 (281)
T PRK06106 179 GVREAIRRARAGV----GHLVKIEVEVD------TLDQ-LEEALELGVDAVLLDNMT----------------------- 224 (281)
T ss_pred cHHHHHHHHHHhC----CCCCcEEEEeC------CHHH-HHHHHHcCCCEEEeCCCC-----------------------
Confidence 4556666655432 11234544443 2333 344558999999887753
Q ss_pred CccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 376 LLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 376 l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
.+.+++..+..+++.++-++|||+ .+.+.++.++|+|.+.++.-.
T Consensus 225 -----~e~l~~av~~~~~~~~leaSGGI~-~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 225 -----PDTLREAVAIVAGRAITEASGRIT-PETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred -----HHHHHHHHHHhCCCceEEEECCCC-HHHHHHHHhcCCCEEEeChhh
Confidence 233444444555578899999996 899999999999999888744
No 363
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.16 E-value=1.3 Score=46.24 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=70.4
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCcc---CCCCCC----CCCc---ccc----cCCC----------
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS---RPDPVS----KNPV---AKE----TGGL---------- 371 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~---r~~~~~----~~~~---~~~----~GGl---------- 371 (462)
-|.|..+=..-+.+...++.+.++++|+.+|++|=-+.. |..+.. .+.. ... .+..
T Consensus 122 ~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
T PLN02493 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS 201 (367)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHH
Confidence 478888876556667899999999999999999733321 111110 0000 000 0000
Q ss_pred --CCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchh
Q 012517 372 --SGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 372 --SG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Ta 425 (462)
++..-...+.+-++.+++.. ++||| +.||.+++||...+++|+|.|.+...
T Consensus 202 ~~~~~~~~~~tW~di~wlr~~~--~~Pii-vKgV~~~~dA~~a~~~Gvd~I~Vsnh 254 (367)
T PLN02493 202 YVAGQIDRTLSWKDVQWLQTIT--KLPIL-VKGVLTGEDARIAIQAGAAGIIVSNH 254 (367)
T ss_pred HHhhcCCCCCCHHHHHHHHhcc--CCCEE-eecCCCHHHHHHHHHcCCCEEEECCC
Confidence 01111234678889999988 68976 56789999999999999999988653
No 364
>PLN02591 tryptophan synthase
Probab=93.14 E-value=0.99 Score=44.68 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCC
Q 012517 291 RKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTT 352 (462)
Q Consensus 291 ~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt 352 (462)
++.+.++++.|++. .+.||+|-.- .+ + .+-++.+.+.|+||+++.-..
T Consensus 174 ~~~~~~~i~~vk~~---------~~~Pv~vGFG--I~--~-~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 174 SGRVESLLQELKEV---------TDKPVAVGFG--IS--K-PEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred chhHHHHHHHHHhc---------CCCceEEeCC--CC--C-HHHHHHHHhcCCCEEEECHHH
Confidence 35567777777764 3789998554 33 1 223455788999999987544
No 365
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.14 E-value=1.9 Score=43.06 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=58.9
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ ..|.|.++-+. |.-.....+.-.++++.+.+.. ..+.||++=++.. +-++..++++
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~Gst----GE~~~Lt~~Er~~l~~~~~~~~-------~~~~~vi~gv~~~-st~~~i~~a~ 90 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGST----GEFYSLTDEERKELLEIVVEAA-------AGRVPVIAGVGAN-STEEAIELAR 90 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTT----TTGGGS-HHHHHHHHHHHHHHH-------TTSSEEEEEEESS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCC----cccccCCHHHHHHHHHHHHHHc-------cCceEEEecCcch-hHHHHHHHHH
Confidence 55555665544 49999997653 3222233445567777777665 2478999998864 4568899999
Q ss_pred HHHHcCCcEEEEecCCccC
Q 012517 337 VAVALRLDGLIISNTTISR 355 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r 355 (462)
.+.+.|+|++.+....+.+
T Consensus 91 ~a~~~Gad~v~v~~P~~~~ 109 (289)
T PF00701_consen 91 HAQDAGADAVLVIPPYYFK 109 (289)
T ss_dssp HHHHTT-SEEEEEESTSSS
T ss_pred HHhhcCceEEEEecccccc
Confidence 9999999999998765443
No 366
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.13 E-value=0.59 Score=47.00 Aligned_cols=90 Identities=17% Similarity=0.290 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCc
Q 012517 296 DLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKP 375 (462)
Q Consensus 296 ~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~ 375 (462)
.+.++|++.+... ...++|.|=+. .+++..+ +.++|+|.|-+-|-++
T Consensus 178 ~i~~av~~~r~~~----~~~~kIeVEv~------slee~~e-a~~~gaDiImLDn~s~---------------------- 224 (281)
T PRK06543 178 DLTEALRHVRAQL----GHTTHVEVEVD------RLDQIEP-VLAAGVDTIMLDNFSL---------------------- 224 (281)
T ss_pred HHHHHHHHHHHhC----CCCCcEEEEeC------CHHHHHH-HHhcCCCEEEECCCCH----------------------
Confidence 4666666665322 11234444432 3444433 4578999998877542
Q ss_pred CccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchh
Q 012517 376 LLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 376 l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Ta 425 (462)
+.+++..+.++++..|.++|||+ .+.+.++.++|+|.+.++.-
T Consensus 225 ------e~l~~av~~~~~~~~leaSGgI~-~~ni~~yA~tGVD~Is~gal 267 (281)
T PRK06543 225 ------DDLREGVELVDGRAIVEASGNVN-LNTVGAIASTGVDVISVGAL 267 (281)
T ss_pred ------HHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHhcCCCEEEeCcc
Confidence 33344444445567899999996 99999999999999988773
No 367
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.07 E-value=1.3 Score=43.99 Aligned_cols=89 Identities=21% Similarity=0.174 Sum_probs=67.9
Q ss_pred CCCEEEEe---cCCCC----hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHH
Q 012517 315 PPPLLVKI---APDLS----KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEM 387 (462)
Q Consensus 315 ~~Pv~vKi---spdl~----~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i 387 (462)
+.||+.=+ ||... ..++.++|+...+.|+++|-+. |-.. ..|| +++.++.+
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvl-te~~------------~f~g---------~~~~l~~v 106 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVL-TDER------------FFQG---------SLEYLRAA 106 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEe-cccc------------cCCC---------CHHHHHHH
Confidence 46776633 55421 2478899999999999999542 2110 1223 47889999
Q ss_pred HHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 388 YLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 388 ~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
++.+ ++||+.--=|.++.++.+...+|||+|-+--.++
T Consensus 107 ~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 107 RAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAAL 144 (260)
T ss_pred HHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC
Confidence 9998 7999998889999999999999999999987773
No 368
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=92.91 E-value=2.4 Score=40.00 Aligned_cols=118 Identities=15% Similarity=0.097 Sum_probs=70.6
Q ss_pred HHHHHHHHHcccCcEEEEe--ccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE--EEecCCCChhhHHH
Q 012517 258 DYVQGVHTLSQYADYLVIN--VSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL--VKIAPDLSKEDLED 333 (462)
Q Consensus 258 dy~~~~~~l~~~aD~leiN--vSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~--vKispdl~~~~~~~ 333 (462)
+..+.++.+....|.+|+. +.+|+. .++++.+++.. .+.+++ +|+. |.. . .
T Consensus 13 ~a~~~~~~l~~~v~~iev~~~l~~~~g------------~~~i~~l~~~~--------~~~~i~~d~k~~-d~~--~--~ 67 (206)
T TIGR03128 13 EALELAEKVADYVDIIEIGTPLIKNEG------------IEAVKEMKEAF--------PDRKVLADLKTM-DAG--E--Y 67 (206)
T ss_pred HHHHHHHHcccCeeEEEeCCHHHHHhC------------HHHHHHHHHHC--------CCCEEEEEEeec-cch--H--H
Confidence 6777788886679999995 433322 25566666531 133444 3444 221 1 2
Q ss_pred HHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEe-cCCCC-HHHHHH
Q 012517 334 IAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC-GGISS-GEDAYR 411 (462)
Q Consensus 334 ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~-GGI~s-~~dA~e 411 (462)
.++.+.++|+|.|+++-.+. . ....+++..+++. +++++.. =+..+ .+++..
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~----------------~-------~~~~~~i~~~~~~---g~~~~~~~~~~~t~~~~~~~ 121 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD----------------D-------ATIKGAVKAAKKH---GKEVQVDLINVKDKVKRAKE 121 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC----------------H-------HHHHHHHHHHHHc---CCEEEEEecCCCChHHHHHH
Confidence 46778899999998763320 0 0113455555553 3555542 24444 478888
Q ss_pred HHHhCCCEEEEchhh
Q 012517 412 KIRAGATLVQLYTAF 426 (462)
Q Consensus 412 ~i~aGAd~Vqv~Tal 426 (462)
+.+.|+|.|.+.+++
T Consensus 122 ~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 122 LKELGADYIGVHTGL 136 (206)
T ss_pred HHHcCCCEEEEcCCc
Confidence 888999999997765
No 369
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=92.84 E-value=1.2 Score=51.00 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhcCC-CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 380 SNNILKEMYLLTRG-KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 380 al~~v~~i~~~~~~-~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
.++.++++.+.+.. .+|+++.||| +.+++.+.+++||+.|.+.++++.
T Consensus 151 G~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 151 GVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMA 199 (755)
T ss_pred CHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhC
Confidence 35667777777721 3999999999 799999999999999999999963
No 370
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=92.82 E-value=12 Score=37.88 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=84.8
Q ss_pred eEEEEec-CCCCCHHHHHHHHHHHHHHcccCcEEEEe-ccCCCCCCcc-----cccCchHHHHHHHHHHHHHHhhccCCC
Q 012517 241 ILGVNIG-KNKTSEDAAADYVQGVHTLSQYADYLVIN-VSSPNTPGLR-----MLQGRKQLKDLVKKVQAARDEMQWGEE 313 (462)
Q Consensus 241 ~lgvnig-~nk~t~~~~~dy~~~~~~l~~~aD~leiN-vSsPnt~glr-----~lq~~~~l~~ll~aV~~~~~~~~~~~~ 313 (462)
||.+.+- +...+. .+..-++.+.+++ +..|.|. =..|..+|+. .+-. ..+.++.|+.+++. .
T Consensus 77 Pv~aD~d~GyG~~~-~v~~tV~~~~~aG--vagi~IEDq~~pk~cg~~~~g~~~l~~---~ee~~~kI~Aa~~a-----~ 145 (290)
T TIGR02321 77 PLIADIDTGFGNAV-NVHYVVPQYEAAG--ASAIVMEDKTFPKDTSLRTDGRQELVR---IEEFQGKIAAATAA-----R 145 (290)
T ss_pred CEEEECCCCCCCcH-HHHHHHHHHHHcC--CeEEEEeCCCCCcccccccCCCccccC---HHHHHHHHHHHHHh-----C
Confidence 6777762 111122 2333333333333 5555552 2345554432 2223 33444445444332 1
Q ss_pred CCCCEEEEecCC-----CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHH
Q 012517 314 GPPPLLVKIAPD-----LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMY 388 (462)
Q Consensus 314 ~~~Pv~vKispd-----l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~ 388 (462)
.+.+++|=-+.| ...++..+=+++..++|+|+|.+-... .+.+.++++.
T Consensus 146 ~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~--------------------------~~~~ei~~~~ 199 (290)
T TIGR02321 146 ADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ--------------------------KTPDEILAFV 199 (290)
T ss_pred CCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC--------------------------CCHHHHHHHH
Confidence 234555533333 123566666788899999999764210 1346678888
Q ss_pred HhcCCCccEEEecCCCCHHHHHHHHHhC-CCEEEEchhhhhcCCChHHHHHHHHHHHH
Q 012517 389 LLTRGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALIPQIKAELAECL 445 (462)
Q Consensus 389 ~~~~~~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali~~GP~~i~~i~~~L~~~l 445 (462)
+.+++.+|++.+.|-.-.-.+.++-+.| ..+|-.+..++.. ....+++.+.+++
T Consensus 200 ~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~a---a~~a~~~~~~~i~ 254 (290)
T TIGR02321 200 KSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA---AVGAVREVFARIR 254 (290)
T ss_pred HhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHH---HHHHHHHHHHHHH
Confidence 8886667887654322222334566677 7887777666542 3444444444444
No 371
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.80 E-value=4.5 Score=40.76 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=60.1
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ .+|+|.++=|+ |.-.....+.-.++++.+++.. ..+.||++=+..+ .++..++++
T Consensus 27 ~l~~li~~l~~~Gv~gi~v~Gst----GE~~~Lt~eEr~~v~~~~~~~~-------~g~~pvi~gv~~~--t~~ai~~a~ 93 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGT----GEFFSLTPAEYEQVVEIAVSTA-------KGKVPVYTGVGGN--TSDAIEIAR 93 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCC----cCcccCCHHHHHHHHHHHHHHh-------CCCCcEEEecCcc--HHHHHHHHH
Confidence 55666666654 49999988553 3333334455567777776654 2478999999853 458889999
Q ss_pred HHHHcCCcEEEEecCCccC
Q 012517 337 VAVALRLDGLIISNTTISR 355 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r 355 (462)
.+.+.|+|++.+....+.+
T Consensus 94 ~a~~~Gadav~~~pP~y~~ 112 (296)
T TIGR03249 94 LAEKAGADGYLLLPPYLIN 112 (296)
T ss_pred HHHHhCCCEEEECCCCCCC
Confidence 9999999999998765543
No 372
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.73 E-value=4.9 Score=40.20 Aligned_cols=86 Identities=13% Similarity=0.199 Sum_probs=59.2
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ .+|.+.++=|+ |.-.....+.-.++++.+.+.. ..+.||++=++.. +.++..++++
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~Gst----GE~~~Ls~~Er~~~~~~~~~~~-------~~~~~vi~gv~~~-s~~~~i~~a~ 87 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTT----GESPTLSHEEHKKVIEFVVDLV-------NGRVPVIAGTGSN-ATEEAISLTK 87 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccC----cccccCCHHHHHHHHHHHHHHh-------CCCCeEEEeCCCc-cHHHHHHHHH
Confidence 55555555543 59999987543 3333344455567777766654 2468999998764 4457889999
Q ss_pred HHHHcCCcEEEEecCCccC
Q 012517 337 VAVALRLDGLIISNTTISR 355 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r 355 (462)
.+++.|+|+|.+....+.+
T Consensus 88 ~a~~~Gad~v~v~pP~y~~ 106 (285)
T TIGR00674 88 FAEDVGADGFLVVTPYYNK 106 (285)
T ss_pred HHHHcCCCEEEEcCCcCCC
Confidence 9999999999998765443
No 373
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=92.72 E-value=5.7 Score=41.91 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=74.5
Q ss_pred CcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCC--CCHHHHHHHHHHHHH
Q 012517 188 GAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNK--TSEDAAADYVQGVHT 265 (462)
Q Consensus 188 ~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk--~t~~~~~dy~~~~~~ 265 (462)
..++.++.=+.-|++-+.+.+.-. ..|+..+|-|.| .+++ +|.+.+..
T Consensus 99 ~~~~~~f~GP~fGi~G~R~~lgv~---------------------------~RPL~~tiiKP~~Glsp~---~~a~~~y~ 148 (391)
T cd08209 99 EEFGRAFPGPKFGIEGIRQRLGVH---------------------------DRPLLMSIFKGVLGLDLD---DLAEQLRE 148 (391)
T ss_pred HHHHhcCCCCCCCchHHHHHhCCC---------------------------CCceEEeeeccccCCCHH---HHHHHHHH
Confidence 456677666667776655544311 135666776653 4677 78888877
Q ss_pred Hcc-cCcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcC
Q 012517 266 LSQ-YADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 266 l~~-~aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~G 342 (462)
+.. ..|+|-= |+.+|-.. .-.+.+..+.++++++.++. +.++-..+-|+-+. +++.+=++.+.+.|
T Consensus 149 ~~~GGvD~IKDDE~l~~q~~~-----p~~eRv~a~~~a~~~a~~eT----G~~~~ya~NiT~~~--~em~~ra~~~~~~G 217 (391)
T cd08209 149 QALGGVDLIKDDEILFDNPLA-----PALERIRACRPVLQEVYEQT----GRRTLYAVNLTGPV--FTLKEKARRLVEAG 217 (391)
T ss_pred HHhCCCCcccccccCCCCCCC-----CHHHHHHHHHHHHHHHHHhh----CCcceEEEEcCCCH--HHHHHHHHHHHHhC
Confidence 776 4787653 22221111 11245566666666655443 44555677777653 58999999999999
Q ss_pred CcEEEEe
Q 012517 343 LDGLIIS 349 (462)
Q Consensus 343 vdgIivs 349 (462)
++++.+.
T Consensus 218 ~~~~mv~ 224 (391)
T cd08209 218 ANALLFN 224 (391)
T ss_pred CCEEEEe
Confidence 9987654
No 374
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=92.71 E-value=4.7 Score=43.52 Aligned_cols=172 Identities=19% Similarity=0.106 Sum_probs=98.9
Q ss_pred CcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCC--CCCHHHHHHHHHHHHH
Q 012517 188 GAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKN--KTSEDAAADYVQGVHT 265 (462)
Q Consensus 188 ~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~n--k~t~~~~~dy~~~~~~ 265 (462)
..++.++.=+.-|++-+.+.+... ..|+..+|-|. ..+++ +|++.+.+
T Consensus 135 ~~~~~~F~GP~fGi~GiR~~lgv~---------------------------~RPL~gtiiKP~~GLsp~---~~a~~~y~ 184 (468)
T PRK04208 135 VAYVKTFKGPPFGIQVERERLDKY---------------------------GRPLLGTTPKPKLGLSAK---NYGRVVYE 184 (468)
T ss_pred HHHHhcCCCCCCCchhHHHHhCCC---------------------------CCceEEEeeccccCCCHH---HHHHHHHH
Confidence 346666666667776655555321 13566666565 34676 88888888
Q ss_pred Hcc-cCcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcC
Q 012517 266 LSQ-YADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 266 l~~-~aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~G 342 (462)
+.. ..|+|-= |+.++-.. .-.+.+..+.++++++.++. +.++-..+-|+-+ +.+++.+-++.+.+.|
T Consensus 185 ~~~GGvD~IKDDE~l~~q~f~-----p~~~Rv~~~~~a~~~a~~eT----G~~k~y~~NiT~~-~~~em~~ra~~~~e~G 254 (468)
T PRK04208 185 ALRGGLDFTKDDENLNSQPFN-----RWRDRFLFVMEAIDKAEAET----GERKGHYLNVTAP-TMEEMYKRAEFAKELG 254 (468)
T ss_pred HHhcCCceeeCCCCCCCCCCc-----cHHHHHHHHHHHHHHHHHhh----CCcceEEEecCCC-CHHHHHHHHHHHHHhC
Confidence 776 4788753 22221110 11245566666666665443 4444556666644 1348888899999999
Q ss_pred CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE----Eec--------CCCCHHHHH
Q 012517 343 LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI----GCG--------GISSGEDAY 410 (462)
Q Consensus 343 vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII----g~G--------GI~s~~dA~ 410 (462)
+.++.+.-- ..|++ +++.+++.++.. ++||. +.| ||.. .++
T Consensus 255 ~~~~mv~~~----------------~~G~~-------~l~~l~~~~~~~--~l~IhaHrA~~ga~~r~~~~Gis~--~vl 307 (468)
T PRK04208 255 SPIVMIDVV----------------TAGWT-------ALQSLREWCRDN--GLALHAHRAMHAAFTRNPNHGISF--RVL 307 (468)
T ss_pred CCEEEEecc----------------ccccH-------HHHHHHHhhhcC--CcEEEecCCcccccccCcCCCCCH--HHH
Confidence 988765411 23443 334444433333 57773 344 4443 344
Q ss_pred HHH--HhCCCEEEEchhh
Q 012517 411 RKI--RAGATLVQLYTAF 426 (462)
Q Consensus 411 e~i--~aGAd~Vqv~Tal 426 (462)
.+| .+|||.+.+.|..
T Consensus 308 ~Kl~RLaGaD~ih~~t~~ 325 (468)
T PRK04208 308 AKLLRLIGVDHLHTGTVV 325 (468)
T ss_pred HHHHHHcCCCccccCCcc
Confidence 444 4899999998863
No 375
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.67 E-value=2.7 Score=42.74 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=60.1
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.. .+|.|.+|=|+ |.-.....+.-.++++.+++.+ ..++||++=+... +.++..++++
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~Gst----GE~~~Lt~eEr~~v~~~~~~~~-------~grvpvi~Gv~~~-~t~~ai~~a~ 97 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTF----GECATLTWEEKQAFVATVVETV-------AGRVPVFVGATTL-NTRDTIARTR 97 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECccc----ccchhCCHHHHHHHHHHHHHHh-------CCCCCEEEEeccC-CHHHHHHHHH
Confidence 55555555543 59999998654 3333445566677777777665 2479999999854 3358899999
Q ss_pred HHHHcCCcEEEEecCCc
Q 012517 337 VAVALRLDGLIISNTTI 353 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~ 353 (462)
.+.+.|+|++.+....+
T Consensus 98 ~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 98 ALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHhCCCEEEECCCcC
Confidence 99999999999986643
No 376
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=92.61 E-value=0.24 Score=49.49 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHH
Q 012517 333 DIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRK 412 (462)
Q Consensus 333 ~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~ 412 (462)
+=|+.++++|+=+|.+-...++- ....||.. +-.+.+.|+.+++.+ ++||||-=-+..-.+|.+.
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~---------~~~~~~v~----R~~~~~~I~~Ik~~V--~iPVIGi~K~~~~~Ea~~L 83 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPAD---------IRAAGGVA----RMADPKMIKEIMDAV--SIPVMAKVRIGHFVEAQIL 83 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchh---------hhhcCCee----ecCCHHHHHHHHHhC--CCCeEEeeehhHHHHHHHH
Confidence 44778899999888875443221 11345643 334678899999999 8999999888889999999
Q ss_pred HHhCCCEEEEchhhhhcCC--ChHHHHHHHHHHHHHHcCCCCHHHhh
Q 012517 413 IRAGATLVQLYTAFAYGGP--ALIPQIKAELAECLERDGFKSIIEAV 457 (462)
Q Consensus 413 i~aGAd~Vqv~Tali~~GP--~~i~~i~~~L~~~l~~~G~~si~e~~ 457 (462)
.++|+|.|- +|--. -| .++..+++.. ..+--.+..|++|++
T Consensus 84 ~eaGvDiID-aT~r~--rP~~~~~~~iK~~~-~~l~MAD~stleEal 126 (283)
T cd04727 84 EALGVDMID-ESEVL--TPADEEHHIDKHKF-KVPFVCGARNLGEAL 126 (283)
T ss_pred HHcCCCEEe-ccCCC--CcHHHHHHHHHHHc-CCcEEccCCCHHHHH
Confidence 999999995 55432 35 4666666655 444456778888875
No 377
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.49 E-value=2.1 Score=44.53 Aligned_cols=105 Identities=21% Similarity=0.141 Sum_probs=68.9
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCc--c-CCCC----CCCCC---c--ccccCCCCCCc-------
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTI--S-RPDP----VSKNP---V--AKETGGLSGKP------- 375 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~--~-r~~~----~~~~~---~--~~~~GGlSG~~------- 375 (462)
+-|.|+++=..-+.+-..++.+.++++|+.+|+++=-+. + |..+ ...+. . ....+...++.
T Consensus 124 ~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (351)
T cd04737 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAA 203 (351)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhh
Confidence 348899887655666788999999999999999874331 1 1100 00010 0 00000000100
Q ss_pred C-ccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEE
Q 012517 376 L-LSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQL 422 (462)
Q Consensus 376 l-~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv 422 (462)
+ ...+.+.++.+++.+ ++||+.= ||.+++||....++|||.|.+
T Consensus 204 ~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 204 AKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred ccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence 0 124678889999988 6898855 699999999999999999988
No 378
>PRK06256 biotin synthase; Validated
Probab=92.48 E-value=3.3 Score=42.30 Aligned_cols=180 Identities=14% Similarity=0.104 Sum_probs=99.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEE
Q 012517 242 LGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVK 321 (462)
Q Consensus 242 lgvnig~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vK 321 (462)
+.++++. .+++ .++.+++++ +|.+.+|+-+ +..-+..+.......+.++.++.+.+. .. ....-+++-
T Consensus 143 ~~~~~g~--l~~e----~l~~LkeaG--~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~-Gi--~v~~~~I~G 210 (336)
T PRK06256 143 ICACLGL--LTEE----QAERLKEAG--VDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAA-GI--EPCSGGIIG 210 (336)
T ss_pred EEecCCc--CCHH----HHHHHHHhC--CCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHc-CC--eeccCeEEe
Confidence 4455543 3443 344444444 8888888766 432112222223456667777665421 00 011223333
Q ss_pred ecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec
Q 012517 322 IAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG 401 (462)
Q Consensus 322 ispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G 401 (462)
+ +.+.+++.+.+..+.+.+++.|.+. ...-.++ .+.. ... ++-....++.++.+|-.++ +..|..+|
T Consensus 211 l--gEt~ed~~~~~~~l~~l~~~~v~i~-~l~P~pG----T~l~----~~~-~~~~~e~l~~ia~~Rl~~p-~~~I~~~~ 277 (336)
T PRK06256 211 M--GESLEDRVEHAFFLKELDADSIPIN-FLNPIPG----TPLE----NHP-ELTPLECLKTIAIFRLINP-DKEIRIAG 277 (336)
T ss_pred C--CCCHHHHHHHHHHHHhCCCCEEeec-ccccCCC----CCCC----CCC-CCCHHHHHHHHHHHHHHCC-CCeeEecC
Confidence 3 5677899999999999999987654 2211111 0110 110 1112234566666666665 78887888
Q ss_pred CC-CCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 402 GI-SSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 402 GI-~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
|= ..-.|...+.-+||+.++++--+...|-.+-.++. .+++.||+
T Consensus 278 gr~~~~~~~~~~~~~g~~~~~~g~~lt~~g~~~~~d~~-----~~~~~g~~ 323 (336)
T PRK06256 278 GREVNLRSLQPLGLGGANSVIVGNYLTTVGQPATADLD-----MIEDLGFE 323 (336)
T ss_pred chhhhchhhHHHHhccCceeeECCcccCCCCChHHHHH-----HHHHCCCC
Confidence 85 34444444444899999999888766765444432 56667774
No 379
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.41 E-value=6.5 Score=39.39 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=57.2
Q ss_pred HHHHHHHHHcc--cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHH
Q 012517 258 DYVQGVHTLSQ--YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA 335 (462)
Q Consensus 258 dy~~~~~~l~~--~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia 335 (462)
.+.+.++.+.+ .+|+|.++-|. |.-.....+.-.++++.+.+.+ ..++||++=++.. +.++..+++
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~Gst----GE~~~Lt~~Er~~~~~~~~~~~-------~~~~~viagv~~~-~~~~ai~~a 89 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGST----GEGFLLSVEERKQIAEIVAEAA-------KGKVTLIAHVGSL-NLKESQELA 89 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCC----cCcccCCHHHHHHHHHHHHHHh-------CCCCeEEeccCCC-CHHHHHHHH
Confidence 45555555543 48999998654 2222233455566777666654 2368999988753 445889999
Q ss_pred HHHHHcCCcEEEEecCCcc
Q 012517 336 AVAVALRLDGLIISNTTIS 354 (462)
Q Consensus 336 ~~~~~~GvdgIivsNTt~~ 354 (462)
+.+++.|+|++.+......
T Consensus 90 ~~a~~~Gad~v~~~~P~y~ 108 (288)
T cd00954 90 KHAEELGYDAISAITPFYY 108 (288)
T ss_pred HHHHHcCCCEEEEeCCCCC
Confidence 9999999999998765443
No 380
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=92.30 E-value=3.5 Score=37.30 Aligned_cols=91 Identities=19% Similarity=0.070 Sum_probs=57.4
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
+.|+++.+...-..+.....++.+.++|+|+|.+....... .....+.++.+++.++ +
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---------------------~~~~~~~~~~i~~~~~-~ 114 (200)
T cd04722 57 DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL---------------------AREDLELIRELREAVP-D 114 (200)
T ss_pred CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH---------------------HHHHHHHHHHHHHhcC-C
Confidence 68999988654333333444678999999999887543100 1224567888888873 4
Q ss_pred ccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh
Q 012517 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 395 ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali 427 (462)
++++..-......+.....+.|++.+++.....
T Consensus 115 ~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 115 VKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGG 147 (200)
T ss_pred ceEEEEECCCCccchhhHHHcCCCEEEEcCCcC
Confidence 665555443332222225678999999977653
No 381
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.28 E-value=0.18 Score=47.27 Aligned_cols=81 Identities=25% Similarity=0.288 Sum_probs=56.1
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
+...+-++=- +|...+..-.+.+.+.+.|+|-+- | | ..-++++++++.+ +
T Consensus 91 gl~tIqRiFl-iDS~al~~~~~~i~~~~PD~vEil------P------------g---------~~p~vi~~i~~~~--~ 140 (175)
T PF04309_consen 91 GLLTIQRIFL-IDSSALETGIKQIEQSKPDAVEIL------P------------G---------VMPKVIKKIREET--N 140 (175)
T ss_dssp T-EEEEEEE--SSHHHHHHHHHHHHHHT-SEEEEE------S------------C---------CHHHHHCCCCCCC--S
T ss_pred CCEEEEEeee-ecHHHHHHHHHHHhhcCCCEEEEc------h------------H---------HHHHHHHHHHHhc--C
Confidence 4556666632 455567788888899999998653 1 1 1346778888888 7
Q ss_pred ccEEEecCCCCHHHHHHHHHhCCCEEEEchh
Q 012517 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 395 ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Ta 425 (462)
+|||+.|=|.+.+|+.+++++||++|.-..-
T Consensus 141 ~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~ 171 (175)
T PF04309_consen 141 IPIIAGGLIRTKEDVEEALKAGADAVSTSNK 171 (175)
T ss_dssp S-EEEESS--SHHHHHHHCCTTCEEEEE--H
T ss_pred CCEEeecccCCHHHHHHHHHcCCEEEEcCCh
Confidence 9999999999999999999999999876543
No 382
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=92.21 E-value=2.4 Score=44.59 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCC-
Q 012517 294 LKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLS- 372 (462)
Q Consensus 294 l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlS- 372 (462)
+...++.+++..++. .+.||++=|.-..+.++..++++.+++.|+|+|.+ |-. .|.. . ....+|..
T Consensus 97 ~~~~l~~i~~~k~~~-----~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iEL-NiS--CPn~----~-~~r~~g~~~ 163 (385)
T PLN02495 97 FETMLAEFKQLKEEY-----PDRILIASIMEEYNKDAWEEIIERVEETGVDALEI-NFS--CPHG----M-PERKMGAAV 163 (385)
T ss_pred HHHHHHHHHHHHhhC-----CCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEE-ECC--CCCC----C-CcCccchhh
Confidence 455555554432221 35799999976567789999999999999999975 321 1100 0 00011111
Q ss_pred CCcCccchHHHHHHHHHhcCCCccEEE--ecCCCCHHHHHH-HHHhCCCEEEEchhh
Q 012517 373 GKPLLSLSNNILKEMYLLTRGKIPLIG--CGGISSGEDAYR-KIRAGATLVQLYTAF 426 (462)
Q Consensus 373 G~~l~~~al~~v~~i~~~~~~~ipIIg--~GGI~s~~dA~e-~i~aGAd~Vqv~Tal 426 (462)
|.- .+...++++.+++.+ ++||+. +-.+++..+..+ ..++|||.|-+.-.+
T Consensus 164 gq~-~e~~~~i~~~Vk~~~--~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 164 GQD-CDLLEEVCGWINAKA--TVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred ccC-HHHHHHHHHHHHHhh--cCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 111 123334556667766 688765 344556666666 556899999886655
No 383
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.05 E-value=1 Score=46.27 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=57.1
Q ss_pred CEEEEecCCCChhhHHHHHHHHHHcCC--cEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 317 PLLVKIAPDLSKEDLEDIAAVAVALRL--DGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 317 Pv~vKispdl~~~~~~~ia~~~~~~Gv--dgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
.+++=++...+.++. +-++.+.++|+ |.|.+--+. +. -....++++++++..+ +
T Consensus 85 ~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~iD~a~-gh---------------------~~~~~e~I~~ir~~~p-~ 140 (326)
T PRK05458 85 GLIASISVGVKDDEY-DFVDQLAAEGLTPEYITIDIAH-GH---------------------SDSVINMIQHIKKHLP-E 140 (326)
T ss_pred ccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEEECCC-Cc---------------------hHHHHHHHHHHHhhCC-C
Confidence 557777777655444 55666777755 988764221 11 1235678999999885 3
Q ss_pred ccEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 395 IPLIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 395 ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
+| +.+|.|.|.++|...+++|||++.++
T Consensus 141 ~~-vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 141 TF-VIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred Ce-EEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 55 44566889999999999999998876
No 384
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.05 E-value=2.6 Score=43.91 Aligned_cols=42 Identities=33% Similarity=0.215 Sum_probs=36.3
Q ss_pred chHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 012517 379 LSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 379 ~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
.+.+.|+.+++.+ +.|||.- ||.+++||...+++|+|.|.+.
T Consensus 223 ~~w~~i~~ir~~~--~~pviiK-gV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 223 FNWQDLRWLRDLW--PHKLLVK-GIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CCHHHHHHHHHhC--CCCEEEe-cCCCHHHHHHHHHCCcCEEEEC
Confidence 4567899999999 5688877 5999999999999999999874
No 385
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=91.99 E-value=7 Score=40.40 Aligned_cols=126 Identities=11% Similarity=-0.002 Sum_probs=84.4
Q ss_pred HHHHHHHHH-cccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTL-SQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l-~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
++.+.+++. ...+..+-+-+.. +.+.-.+.+++|+++. +.+..|+|-....++.++..++++
T Consensus 141 ~~~~~a~~~~~~Gf~~~Kikvg~----------~~~~d~~~v~~vRe~~-------G~~~~l~vDaN~~~~~~~A~~~~~ 203 (352)
T cd03328 141 RLREQLSGWVAQGIPRVKMKIGR----------DPRRDPDRVAAARRAI-------GPDAELFVDANGAYSRKQALALAR 203 (352)
T ss_pred HHHHHHHHHHHCCCCEEEeecCC----------CHHHHHHHHHHHHHHc-------CCCCeEEEECCCCCCHHHHHHHHH
Confidence 444444433 2457888876631 1123346677777654 346788887777678788899999
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+++.++..+ . .|+.+..++-.+++++..+-.+||.+-=-+.+..|+.+.++.|
T Consensus 204 ~l~~~~~~~~-------E-------------------eP~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~ 257 (352)
T cd03328 204 AFADEGVTWF-------E-------------------EPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAH 257 (352)
T ss_pred HHHHhCcchh-------h-------------------CCCChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcC
Confidence 9998776533 1 1222334667788888822268988877788999999999987
Q ss_pred -CCEEEEchhh
Q 012517 417 -ATLVQLYTAF 426 (462)
Q Consensus 417 -Ad~Vqv~Tal 426 (462)
+|.||+--.-
T Consensus 258 a~div~~d~~~ 268 (352)
T cd03328 258 AVDVLQADVTR 268 (352)
T ss_pred CCCEEecCccc
Confidence 8888887654
No 386
>PRK08185 hypothetical protein; Provisional
Probab=91.95 E-value=8.6 Score=38.82 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCC--CcCccchHHHHHHHHHhcCCCccEEEecCCCCH-
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSG--KPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG- 406 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG--~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~- 406 (462)
+.++..+.+.+.|+|.+.++..|.. |-+.+ +| ...++.++++++.+ ++||+.-||+..+
T Consensus 150 ~peea~~f~~~TgvD~LAvaiGt~H--------------G~y~~~~kp--~L~~e~l~~I~~~~--~iPLVlHGgsg~~~ 211 (283)
T PRK08185 150 DPEQAEDFVSRTGVDTLAVAIGTAH--------------GIYPKDKKP--ELQMDLLKEINERV--DIPLVLHGGSANPD 211 (283)
T ss_pred CHHHHHHHHHhhCCCEEEeccCccc--------------CCcCCCCCC--CcCHHHHHHHHHhh--CCCEEEECCCCCCH
Confidence 4556666677789999988765521 11111 22 23588999999998 7999999999665
Q ss_pred HHHHHHHHhCCCEEEEchhhhh
Q 012517 407 EDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 407 ~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+|..+++..|..=|-++|.+.+
T Consensus 212 e~~~~ai~~GI~KiNi~T~l~~ 233 (283)
T PRK08185 212 AEIAESVQLGVGKINISSDMKY 233 (283)
T ss_pred HHHHHHHHCCCeEEEeChHHHH
Confidence 5566688999999999999853
No 387
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=91.90 E-value=2 Score=43.00 Aligned_cols=96 Identities=19% Similarity=0.124 Sum_probs=69.6
Q ss_pred CCCCEEEEecCCCChhhHHHHHHHHHHcCC-cEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC
Q 012517 314 GPPPLLVKIAPDLSKEDLEDIAAVAVALRL-DGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR 392 (462)
Q Consensus 314 ~~~Pv~vKispdl~~~~~~~ia~~~~~~Gv-dgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~ 392 (462)
.+.||.+|=..+.+.+++...++.....|+ .+++.+.... .||. ++.-....+..+..+++..
T Consensus 130 ~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~ergl--------------r~g~-~~n~~~~di~~~~~~~~~~- 193 (270)
T PF00793_consen 130 TGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGL--------------RGGY-GPNYNVLDIAAVPIMKKKT- 193 (270)
T ss_dssp TSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEE--------------EESS-SSSSEEHHTTHHHHHHHHT-
T ss_pred CCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeee--------------eccc-cccccchhHHHHHHHHHhc-
Confidence 478999999999888899999999999995 8877764321 2333 2322334556677777776
Q ss_pred CCccEEEec----CCCC-------HHHHHHHHHhCCCEEEEchhh
Q 012517 393 GKIPLIGCG----GISS-------GEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 393 ~~ipIIg~G----GI~s-------~~dA~e~i~aGAd~Vqv~Tal 426 (462)
.+|||.-- |-.+ +..+.+.+.+|++.+++=+-.
T Consensus 194 -~lpVivD~SH~~~~~~~~~q~~V~~~a~aaia~GidGlmiEsH~ 237 (270)
T PF00793_consen 194 -HLPVIVDPSHANSRKDGGRQELVPPLARAAIAAGIDGLMIESHP 237 (270)
T ss_dssp -SSEEEEEHHHHTTTCGGGGHCGHHHHHHHHHHHTESEEEEEEES
T ss_pred -CCCEEECchhhhccccCCchhhHHHHHHHHHhhcCCEEEEeecC
Confidence 67988643 3344 778999999999999997744
No 388
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=91.87 E-value=2.4 Score=43.82 Aligned_cols=97 Identities=24% Similarity=0.282 Sum_probs=51.9
Q ss_pred CChhhHHHH-------HHHHHHcCCcEEEEecCCccCC-CC-CC--CCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 326 LSKEDLEDI-------AAVAVALRLDGLIISNTTISRP-DP-VS--KNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 326 l~~~~~~~i-------a~~~~~~GvdgIivsNTt~~r~-~~-~~--~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
++.+|+.++ |+.+.++|+|||-+.-.- +.. .. +. .+.-..++|| |=..-....+++++.+++.++.+
T Consensus 131 mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~vg~~ 208 (343)
T cd04734 131 MEEEDIEEIIAAFADAARRCQAGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGG-SLENRMRFLLEVLAAVRAAVGPD 208 (343)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCC-CHHHHhHHHHHHHHHHHHHcCCC
Confidence 565555444 445678999999775310 000 00 00 0011124555 21111234678899999998656
Q ss_pred ccEEE--------ecCCCCHHHHHHHH----HhC-CCEEEEchh
Q 012517 395 IPLIG--------CGGISSGEDAYRKI----RAG-ATLVQLYTA 425 (462)
Q Consensus 395 ipIIg--------~GGI~s~~dA~e~i----~aG-Ad~Vqv~Ta 425 (462)
++|.. .||+ +.+|..+++ ++| +|++.|..+
T Consensus 209 ~~v~iRl~~~~~~~~G~-~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 209 FIVGIRISGDEDTEGGL-SPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred CeEEEEeehhhccCCCC-CHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 55432 3444 456555433 368 899999543
No 389
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.85 E-value=1.3 Score=44.71 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCc
Q 012517 296 DLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKP 375 (462)
Q Consensus 296 ~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~ 375 (462)
.+.++|++.++.. ...|+.|=+. .+.+. ..+.+.|+|.|-+-|-++.
T Consensus 185 ~i~~ai~~~r~~~-----~~~kIeVEv~------tl~ea-~eal~~gaDiI~LDnm~~e--------------------- 231 (289)
T PRK07896 185 SVVAALRAVRAAA-----PDLPCEVEVD------SLEQL-DEVLAEGAELVLLDNFPVW--------------------- 231 (289)
T ss_pred cHHHHHHHHHHhC-----CCCCEEEEcC------CHHHH-HHHHHcCCCEEEeCCCCHH---------------------
Confidence 4556666655322 2345555442 33443 3446899999988876421
Q ss_pred CccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 376 LLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 376 l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
...+.+..+++. .+++.|.++|||+ .+.+.++.++|+|.+.+++-.
T Consensus 232 ---~vk~av~~~~~~-~~~v~ieaSGGI~-~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 232 ---QTQEAVQRRDAR-APTVLLESSGGLT-LDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred ---HHHHHHHHHhcc-CCCEEEEEECCCC-HHHHHHHHhcCCCEEEeChhh
Confidence 112334433333 4578999999996 899999999999999888754
No 390
>PRK14725 pyruvate kinase; Provisional
Probab=91.77 E-value=5.9 Score=43.89 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhh
Q 012517 251 TSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKED 330 (462)
Q Consensus 251 ~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~ 330 (462)
.|+.+.+|..-+++. +|||.+.|- | +.+.+.++-+.+.+. ...+.+|+.||---...++
T Consensus 430 LTekD~~dl~f~~~~----vD~ValSFV-------r---s~~DV~~lr~~L~~~-------g~~~~~IiaKIEt~~av~n 488 (608)
T PRK14725 430 LTDKDLEDLAFVAKH----ADIVALSFV-------R---SPEDVRLLLDALEKL-------GADDLGVVLKIETRRAFEN 488 (608)
T ss_pred CCHHHHHHHHHHHHh----CCEEEECCC-------C---CHHHHHHHHHHHHHc-------CCCCCcEEEEECCHHHHHH
Confidence 567666665544433 799988762 2 223333333333221 1236899999954333457
Q ss_pred HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchH-HHHHHHHHhcCCCccEEEecC-------
Q 012517 331 LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSN-NILKEMYLLTRGKIPLIGCGG------- 402 (462)
Q Consensus 331 ~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al-~~v~~i~~~~~~~ipIIg~GG------- 402 (462)
+.+|+..+...-.|||.+.-.-.+- +.| +.- -+... ++++.. +.. .+|+|...=
T Consensus 489 L~eIl~~am~~~~DGIMIARGDLgv-----------Ei~-~e~---lp~iQk~Ii~~c-~~~--~kPVI~ATQmLESM~~ 550 (608)
T PRK14725 489 LPRILLEAMRHPRFGVMIARGDLAV-----------EVG-FER---LAEVQEEILWLC-EAA--HVPVIWATQVLESLAK 550 (608)
T ss_pred HHHHHHhhccCCCcEEEEECCcccc-----------ccC-HHH---HHHHHHHHHHHH-HHc--CCCEEEEcchHhhhcc
Confidence 7888887777778999987443221 111 110 01122 233333 333 578776432
Q ss_pred --CCC---HHHHHHHHHhCCCEEEEchhhhhcCCChHHH--HHHHHHHHHHHcCCCC
Q 012517 403 --ISS---GEDAYRKIRAGATLVQLYTAFAYGGPALIPQ--IKAELAECLERDGFKS 452 (462)
Q Consensus 403 --I~s---~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~--i~~~L~~~l~~~G~~s 452 (462)
+-| ..|+...+ |||.||+. .|+.-++- +...+...|+++-.++
T Consensus 551 ~p~PTRAEvtDVAnAv--gaD~VMLS-----~G~yPveAV~~l~~I~~r~e~~~~Kk 600 (608)
T PRK14725 551 KGLPSRAEITDAAMAL--RAECVMLN-----KGPHIVEAVRVLDDILRRMEEHQRKK 600 (608)
T ss_pred CCCCCchhHHHHHhhh--cCCEEeec-----CCCCHHHHHHHHHHHHHHHHHhhhcc
Confidence 322 23555555 99999998 47654432 2334444455544333
No 391
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=91.74 E-value=4.3 Score=42.98 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=60.7
Q ss_pred eEEEEecCC--CCCHHHHHHHHHHHHHHcc-cCcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCC
Q 012517 241 ILGVNIGKN--KTSEDAAADYVQGVHTLSQ-YADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGP 315 (462)
Q Consensus 241 ~lgvnig~n--k~t~~~~~dy~~~~~~l~~-~aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~ 315 (462)
|+..+|-|. ..+++ +|++.+.++.. ..|+|-= |+.+|-.. .-.+.+..+.++++++.++. +.+
T Consensus 144 PLigtiiKP~~Glsp~---~~a~~~y~~~~GGvD~IKDDE~l~~q~~~-----p~~eRv~~~~~a~~~a~~eT----G~~ 211 (406)
T cd08207 144 PLIGTIIKPSVGLTPE---ETAALVRQLAAAGIDFIKDDELLANPPYS-----PLDERVRAVMRVINDHAQRT----GRK 211 (406)
T ss_pred ceEEEecccccCCCHH---HHHHHHHHHHhCCCCcccccccCCCCCCC-----cHHHHHHHHHHHHHHHHHhh----CCc
Confidence 666677665 34677 78888877776 3788753 23222111 11245666666666665544 445
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEe
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIIS 349 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivs 349 (462)
+-..+-|+-+ .+++.+-++.+.+.|++++.+.
T Consensus 212 ~~y~~NiT~~--~~em~~ra~~~~~~G~~~~mv~ 243 (406)
T cd08207 212 VMYAFNITDD--IDEMRRNHDLVVEAGGTCVMVS 243 (406)
T ss_pred ceEEEecCCC--HHHHHHHHHHHHHhCCCeEEEe
Confidence 5567777765 3588888999999999987654
No 392
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=91.73 E-value=22 Score=38.45 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=69.2
Q ss_pred cCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecC
Q 012517 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGG 402 (462)
Q Consensus 323 spdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GG 402 (462)
+|..+.+.+.++++.+.++|+|.|.+..|. |+. ......++++.+++.+ ++||-.=.=
T Consensus 147 ~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~-----------------G~l---~P~~v~~Lv~~lk~~~--~vpI~~H~H 204 (467)
T PRK14041 147 SPVHTLEYYLEFARELVDMGVDSICIKDMA-----------------GLL---TPKRAYELVKALKKKF--GVPVEVHSH 204 (467)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCcc-----------------CCc---CHHHHHHHHHHHHHhc--CCceEEEec
Confidence 455566788999999999999999887664 111 0123568888999888 477643332
Q ss_pred CCC---HHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCCC
Q 012517 403 ISS---GEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKS 452 (462)
Q Consensus 403 I~s---~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~s 452 (462)
=+. ..-+++.+++||+.|...-+=+- ++.-+--.+++...|+..|+.+
T Consensus 205 nt~GlA~AN~laAieaGad~vD~sv~~~g--~gagN~atE~lv~~L~~~g~~t 255 (467)
T PRK14041 205 CTTGLASLAYLAAVEAGADMFDTAISPFS--MGTSQPPFESMYYAFRENGKET 255 (467)
T ss_pred CCCCcHHHHHHHHHHhCCCEEEeeccccC--CCCCChhHHHHHHHHHhcCCCC
Confidence 222 34567778999999987766443 3333444455666666666653
No 393
>TIGR03586 PseI pseudaminic acid synthase.
Probab=91.72 E-value=5.1 Score=41.23 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC
Q 012517 314 GPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG 393 (462)
Q Consensus 314 ~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~ 393 (462)
.++||++|... -+.+|+...++.+.+.|..-|++...+...| .|.....+..+..+++.+
T Consensus 133 ~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP-----------------~~~~~~nL~~i~~lk~~f-- 192 (327)
T TIGR03586 133 TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKCTSSYP-----------------APLEDANLRTIPDLAERF-- 192 (327)
T ss_pred cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEecCCCCC-----------------CCcccCCHHHHHHHHHHh--
Confidence 37899999877 4778999999999999985555533331111 122345788899999988
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh--cCCC--------hHHHHHHHHHHHHH
Q 012517 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY--GGPA--------LIPQIKAELAECLE 446 (462)
Q Consensus 394 ~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~--~GP~--------~i~~i~~~L~~~l~ 446 (462)
++||..+.=-....-+...+.+||+++...=-+=. .||+ -++++.+.++..-.
T Consensus 193 ~~pVG~SDHt~G~~~~~aAva~GA~iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~ 255 (327)
T TIGR03586 193 NVPVGLSDHTLGILAPVAAVALGACVIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWL 255 (327)
T ss_pred CCCEEeeCCCCchHHHHHHHHcCCCEEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHH
Confidence 58986666444456677788899998876644421 2343 34555555554433
No 394
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=91.69 E-value=1.5 Score=44.74 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=48.3
Q ss_pred cCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEE
Q 012517 341 LRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLV 420 (462)
Q Consensus 341 ~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~V 420 (462)
+|+|.|-+-|-... ++.. ..+.+.+++..+.++++.+|-++|||+ .+.+.++...|+|.+
T Consensus 228 agaDiImLDnm~~~-~~~~------------------~~~~e~l~~av~~~~~~~~lEaSGGIt-~~ni~~yA~tGVD~I 287 (308)
T PLN02716 228 TSLTRVMLDNMVVP-LENG------------------DVDVSMLKEAVELINGRFETEASGNVT-LDTVHKIGQTGVTYI 287 (308)
T ss_pred CCCCEEEeCCCccc-cccc------------------CCCHHHHHHHHHhhCCCceEEEECCCC-HHHHHHHHHcCCCEE
Confidence 89999998886211 1100 124455666666666678999999996 999999999999999
Q ss_pred EEchhh
Q 012517 421 QLYTAF 426 (462)
Q Consensus 421 qv~Tal 426 (462)
.++.-.
T Consensus 288 s~Galt 293 (308)
T PLN02716 288 SSGALT 293 (308)
T ss_pred EeCccc
Confidence 887643
No 395
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=91.62 E-value=3.6 Score=40.06 Aligned_cols=91 Identities=15% Similarity=0.045 Sum_probs=54.9
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
+.+++.=+-.....+.-.+.++.+.+.+++|+.+.+-.... -.....++|..+...++.+
T Consensus 54 ~~~l~gvIqGg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~--------------------~~~~~~~~l~~i~~~lp~~ 113 (238)
T PF01702_consen 54 KQSLFGVIQGGDDKDLRRRSAEELSEDGFDGYAIGGLSPGE--------------------EKEERLEILEAIINNLPPD 113 (238)
T ss_dssp CSEEEEEE--TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSS--------------------HHHHHHHHHHHHHHCS-TT
T ss_pred CcceeeeeCCCCCHHHHHHHHHHHHhcccccccccCCcCCC--------------------CHHHHHHHHHHHHhhCCcc
Confidence 45555555554444334566677777679999887542111 0223457778888888888
Q ss_pred ccEEEecCCCCHHHHHHHHHhCCCEEEEchhh
Q 012517 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 395 ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tal 426 (462)
.|+.. =|+.+|+++..++..|+|++--..+.
T Consensus 114 ~pr~l-~G~~~P~~i~~~v~~GvD~fDs~~p~ 144 (238)
T PF01702_consen 114 KPRYL-LGVGTPEEILEAVYLGVDLFDSSYPT 144 (238)
T ss_dssp S-EEE-TTB-SHHHHHHHHHTT--EEEESHHH
T ss_pred cceec-cCCCCHHHHHHHHHcCCcEEcchHHH
Confidence 99888 67889999999999999987665543
No 396
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.62 E-value=14 Score=35.93 Aligned_cols=160 Identities=15% Similarity=0.092 Sum_probs=89.2
Q ss_pred HHHHHHHHcccCcEEEEeccCCCCCCcccc--cCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEec--CC--CChhhHH
Q 012517 259 YVQGVHTLSQYADYLVINVSSPNTPGLRML--QGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIA--PD--LSKEDLE 332 (462)
Q Consensus 259 y~~~~~~l~~~aD~leiNvSsPnt~glr~l--q~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKis--pd--l~~~~~~ 332 (462)
.++.+.... +|.+.+-++...+.....+ ...+.+..+++.++.+.+ ....+.+=+. .. .+.+++.
T Consensus 79 ~i~~a~~~g--~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-------~G~~v~~~~~~~~~~~~~~~~l~ 149 (265)
T cd03174 79 GIERALEAG--VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE-------AGLEVEGSLEDAFGCKTDPEYVL 149 (265)
T ss_pred hHHHHHhCC--cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-------CCCeEEEEEEeecCCCCCHHHHH
Confidence 344444433 7777776654321100000 011345666666665542 2455555552 22 5667899
Q ss_pred HHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec----CCCCHHH
Q 012517 333 DIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG----GISSGED 408 (462)
Q Consensus 333 ~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G----GI~s~~d 408 (462)
++++.+.+.|+|.|.+..|+- .+ ......+.++.+++.++ +++|-.=+ |.. -.-
T Consensus 150 ~~~~~~~~~g~~~i~l~Dt~G----------------~~----~P~~v~~li~~l~~~~~-~~~~~~H~Hn~~gla-~an 207 (265)
T cd03174 150 EVAKALEEAGADEISLKDTVG----------------LA----TPEEVAELVKALREALP-DVPLGLHTHNTLGLA-VAN 207 (265)
T ss_pred HHHHHHHHcCCCEEEechhcC----------------Cc----CHHHHHHHHHHHHHhCC-CCeEEEEeCCCCChH-HHH
Confidence 999999999999999877641 11 11234577888888885 36665544 332 456
Q ss_pred HHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 409 AYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
+++++++||+.|...-.=+=++.+- --.+.+..+|+..|+.
T Consensus 208 ~laA~~aG~~~id~s~~G~G~~~Gn--~~~e~~~~~l~~~~~~ 248 (265)
T cd03174 208 SLAALEAGADRVDGSVNGLGERAGN--AATEDLVAALEGLGID 248 (265)
T ss_pred HHHHHHcCCCEEEeccccccccccC--ccHHHHHHHHHhcCCC
Confidence 7788899998876543222122221 1134455566666543
No 397
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=91.59 E-value=7.4 Score=39.31 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH-HH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG-ED 408 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~-~d 408 (462)
+.++..+-+.+.|+|.+-++..| ..|-|.|+| .+..+.+++|++.+ ++|++-=||=..+ +|
T Consensus 157 ~peeA~~Fv~~TgvD~LAvaiGt--------------~HG~Y~~~p--~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~ 218 (285)
T PRK07709 157 DPAECKHLVEATGIDCLAPALGS--------------VHGPYKGEP--NLGFAEMEQVRDFT--GVPLVLHGGTGIPTAD 218 (285)
T ss_pred CHHHHHHHHHHhCCCEEEEeecc--------------cccCcCCCC--ccCHHHHHHHHHHH--CCCEEEeCCCCCCHHH
Confidence 55677777788999999887655 234455544 35678999999999 7999999988777 67
Q ss_pred HHHHHHhCCCEEEEchhhhh
Q 012517 409 AYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali~ 428 (462)
..++++.|..=|-++|.+..
T Consensus 219 ~~~ai~~Gi~KiNi~T~l~~ 238 (285)
T PRK07709 219 IEKAISLGTSKINVNTENQI 238 (285)
T ss_pred HHHHHHcCCeEEEeChHHHH
Confidence 77889999999999999853
No 398
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.57 E-value=15 Score=36.10 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=83.1
Q ss_pred HHHHHHHHHcc-cCcEEEEec-cCCCCCC---cccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC----CCh
Q 012517 258 DYVQGVHTLSQ-YADYLVINV-SSPNTPG---LRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD----LSK 328 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNv-SsPnt~g---lr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd----l~~ 328 (462)
++.+.++++.+ .++++.|.= ..|..+| ...+-..+...+.+++++++++.+ .+++|+.+.-.. ...
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-----~~~~IiARTDa~~~~~~~~ 159 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-----PDFVIIARTDALLAGEEGL 159 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-----CCeEEEEEcCchhccCCCH
Confidence 55566666554 488877731 2222222 233445566666677777665321 367888883221 234
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH--
Q 012517 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG-- 406 (462)
Q Consensus 329 ~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~-- 406 (462)
++..+-+++..++|+|+|.+.... ..+.++++.+.. +.||+..-. ..+
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~---------------------------~~~~~~~~~~~~--~~Pl~~~~~-~~~~~ 209 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLK---------------------------DPEEIRAFAEAP--DVPLNVNMT-PGGNL 209 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCC---------------------------CHHHHHHHHhcC--CCCEEEEec-CCCCC
Confidence 578888999999999999764221 346778888887 577776521 112
Q ss_pred HHHHHHHHhCCCEEEEchhhh
Q 012517 407 EDAYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 407 ~dA~e~i~aGAd~Vqv~Tali 427 (462)
-...++-+.|...|-++..++
T Consensus 210 ~~~~~l~~lG~~~v~~~~~~~ 230 (243)
T cd00377 210 LTVAELAELGVRRVSYGLALL 230 (243)
T ss_pred CCHHHHHHCCCeEEEEChHHH
Confidence 356667778999987776654
No 399
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=91.51 E-value=14 Score=35.62 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=53.4
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
.+.+++.++++.+.+.|+|.|.+..|.-.. ......++++.+++.++. ++|-.=+==+.
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~--------------------~P~~v~~lv~~~~~~~~~-~~l~~H~Hnd~ 192 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADTVGIM--------------------TPEDVAELVRALREALPD-IPLGFHAHNDL 192 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEETTS-S---------------------HHHHHHHHHHHHHHSTT-SEEEEEEBBTT
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCccCCc--------------------CHHHHHHHHHHHHHhccC-CeEEEEecCCc
Confidence 466789999999999999999998775211 112345888999999863 55543321111
Q ss_pred ---HHHHHHHHHhCCCEEEEchhh
Q 012517 406 ---GEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 406 ---~~dA~e~i~aGAd~Vqv~Tal 426 (462)
-.-++..+++||+.|...-.=
T Consensus 193 Gla~An~laA~~aGa~~id~t~~G 216 (237)
T PF00682_consen 193 GLAVANALAALEAGADRIDGTLGG 216 (237)
T ss_dssp S-HHHHHHHHHHTT-SEEEEBGGG
T ss_pred cchhHHHHHHHHcCCCEEEccCcc
Confidence 455788889999998766443
No 400
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=91.49 E-value=7.7 Score=40.55 Aligned_cols=124 Identities=16% Similarity=0.112 Sum_probs=76.3
Q ss_pred CcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCC-CCCHHHHHHHHHHHHHH
Q 012517 188 GAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKN-KTSEDAAADYVQGVHTL 266 (462)
Q Consensus 188 ~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~n-k~t~~~~~dy~~~~~~l 266 (462)
..++..+.=+.-|++-+.+.+... ..|+..++-|. ..+++ +|.+.+.++
T Consensus 101 ~~~~~~f~GP~~Gi~g~R~~lgv~---------------------------~rPl~~tiiKP~GL~~~---~~a~~~~~~ 150 (364)
T cd08210 101 PSLLRRFPGPRFGIAGLRALLGIP---------------------------ERPLLCSALKPQGLSAA---ELAELAYAF 150 (364)
T ss_pred HHHHhcCCCCCCChHHHHHHhCCC---------------------------CCceEEEEeccccCCHH---HHHHHHHHH
Confidence 446666666667776655544311 12455555443 44565 788888887
Q ss_pred cc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcE
Q 012517 267 SQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDG 345 (462)
Q Consensus 267 ~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~Gvdg 345 (462)
.. ..|.|-.+=+--|.+ .+.-.+.+..+.++++++.++. +.+++.++=|+-+. +++.+-++.++++|+++
T Consensus 151 ~~gGvD~IKdDe~l~~~~---~~p~~eRv~~v~~av~~a~~eT----G~~~~y~~Nita~~--~em~~ra~~a~~~Ga~~ 221 (364)
T cd08210 151 ALGGIDIIKDDHGLADQP---FAPFEERVKACQEAVAEANAET----GGRTLYAPNVTGPP--TQLLERARFAKEAGAGG 221 (364)
T ss_pred HhcCCCeeecCccccCcc---CCCHHHHHHHHHHHHHHHHhhc----CCcceEEEecCCCH--HHHHHHHHHHHHcCCCE
Confidence 76 489986542211111 1122244555555555554433 56789999998763 38999999999999999
Q ss_pred EEEec
Q 012517 346 LIISN 350 (462)
Q Consensus 346 IivsN 350 (462)
+.+.-
T Consensus 222 vMv~~ 226 (364)
T cd08210 222 VLIAP 226 (364)
T ss_pred EEeec
Confidence 87653
No 401
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.44 E-value=5.2 Score=40.56 Aligned_cols=155 Identities=14% Similarity=0.188 Sum_probs=85.2
Q ss_pred HHHHHcccCcEEEEe---ccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCC-hhhHHHHHHH
Q 012517 262 GVHTLSQYADYLVIN---VSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLS-KEDLEDIAAV 337 (462)
Q Consensus 262 ~~~~l~~~aD~leiN---vSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~-~~~~~~ia~~ 337 (462)
.+++++ ++++-+. +++ ..-|..|.. .-.+.++++.+++.++. .++||++-+-..+. ..++...++.
T Consensus 32 i~e~~G--f~ai~~Sg~~~a~-~~lG~PD~g-~l~~~e~~~~~~~I~~~------~~iPviaD~d~GyG~~~~v~r~V~~ 101 (292)
T PRK11320 32 LAERAG--FKAIYLSGGGVAA-ASLGLPDLG-ITTLDDVLIDVRRITDA------CDLPLLVDIDTGFGGAFNIARTVKS 101 (292)
T ss_pred HHHHcC--CCEEEeCHHHHHh-HhcCCCCCC-CCCHHHHHHHHHHHHhc------cCCCEEEECCCCCCCHHHHHHHHHH
Confidence 344444 7777653 221 122444421 22355666666655432 47999999876654 3467778999
Q ss_pred HHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC----CCccEEEecCC---CCHHHHH
Q 012517 338 AVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR----GKIPLIGCGGI---SSGEDAY 410 (462)
Q Consensus 338 ~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~----~~ipIIg~GGI---~s~~dA~ 410 (462)
+.++|+.||.+=..+.. ...|-+.|+.+.+.. +.+.+|+.... .++-||+=--. ...++|+
T Consensus 102 ~~~aGaagi~IEDq~~p-----------K~cg~~~~~~lv~~e-e~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI 169 (292)
T PRK11320 102 MIKAGAAAVHIEDQVGA-----------KRCGHRPNKEIVSQE-EMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAI 169 (292)
T ss_pred HHHcCCeEEEEecCCCc-----------cccCCCCCCcccCHH-HHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHH
Confidence 99999999988644310 123334466555443 44555544321 23434332111 1256665
Q ss_pred HH----HHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 411 RK----IRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 411 e~----i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
+. .++|||+|.+-. + +.++.++++.+.+
T Consensus 170 ~Ra~aY~eAGAD~ifi~~-~--~~~~~i~~~~~~~ 201 (292)
T PRK11320 170 ERAQAYVEAGADMIFPEA-M--TELEMYRRFADAV 201 (292)
T ss_pred HHHHHHHHcCCCEEEecC-C--CCHHHHHHHHHhc
Confidence 54 468999998854 1 2345555555543
No 402
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.44 E-value=5.2 Score=40.40 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCC-hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCC
Q 012517 293 QLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLS-KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGL 371 (462)
Q Consensus 293 ~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~-~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGl 371 (462)
.+.++++.+++.++. .++||++-+-..+. ..++...++.+.++|+.||.+=..+.. +..|-+
T Consensus 57 t~~e~~~~~~~I~~~------~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~p-----------K~cgh~ 119 (285)
T TIGR02317 57 TLDEVAEDARRITRV------TDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLP-----------KRCGHL 119 (285)
T ss_pred CHHHHHHHHHHHHhc------cCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCc-----------cccCCC
Confidence 355666666655432 47999998876544 346777799999999999988654311 123444
Q ss_pred CCCcCccchHHHHHHHHHhcC--CCccEEEecCCC-----CHHHHHHHH----HhCCCEEEEchhhhhcCCChHHHHHHH
Q 012517 372 SGKPLLSLSNNILKEMYLLTR--GKIPLIGCGGIS-----SGEDAYRKI----RAGATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 372 SG~~l~~~al~~v~~i~~~~~--~~ipIIg~GGI~-----s~~dA~e~i----~aGAd~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
.|+.+.+.. +.+.+|+.... .+.+++.+.... ..++|++.. ++|||+|.+-. + ..+..++++.++
T Consensus 120 ~g~~lv~~e-e~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g-~--~~~e~i~~~~~~ 195 (285)
T TIGR02317 120 PGKELVSRE-EMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEA-L--TSLEEFRQFAKA 195 (285)
T ss_pred CCccccCHH-HHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCC-C--CCHHHHHHHHHh
Confidence 566665543 44444443321 122333333222 256766554 68999998853 1 234555565555
Q ss_pred H
Q 012517 441 L 441 (462)
Q Consensus 441 L 441 (462)
+
T Consensus 196 i 196 (285)
T TIGR02317 196 V 196 (285)
T ss_pred c
Confidence 4
No 403
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=91.36 E-value=6.1 Score=39.42 Aligned_cols=67 Identities=18% Similarity=0.330 Sum_probs=39.8
Q ss_pred cEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEec
Q 012517 271 DYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISN 350 (462)
Q Consensus 271 D~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsN 350 (462)
+.+..=+|.|-+-|.+. +-.+.+.++++.+++. .+.||.|-..- . + .+-++.+.+.|+||+|+..
T Consensus 168 ~gFIY~vS~~GvTG~~~-~~~~~~~~~i~~ir~~---------t~~Pi~vGFGI--~--~-~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 168 PGCIYLVSTTGVTGLKT-ELDKKLKKLIETIKKM---------TNKPIILGFGI--S--T-SEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred CCcEEEEcCCCCCCCCc-cccHHHHHHHHHHHHh---------cCCCEEEECCc--C--C-HHHHHHHHhcCCCEEEECH
Confidence 33333344444444432 2235577788887764 37899985543 2 1 2335567889999999875
Q ss_pred CC
Q 012517 351 TT 352 (462)
Q Consensus 351 Tt 352 (462)
..
T Consensus 233 al 234 (263)
T CHL00200 233 AC 234 (263)
T ss_pred HH
Confidence 44
No 404
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=91.36 E-value=0.76 Score=50.02 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..+-++.+.++|+|.|++-- +. |.| ...++.++++++..+ +. .|..|+|.|.++|
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~-~~----------------g~~-----~~~~~~i~~ik~~~p-~~-~vi~g~v~t~e~a 303 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDS-SQ----------------GDS-----IYQLEMIKYIKKTYP-EL-DVIGGNVVTMYQA 303 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeC-CC----------------CCc-----HHHHHHHHHHHHhCC-CC-cEEEecCCCHHHH
Confidence 346778899999999887642 21 111 124578999999875 34 4456899999999
Q ss_pred HHHHHhCCCEEEEc
Q 012517 410 YRKIRAGATLVQLY 423 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~ 423 (462)
..++++|||.|.++
T Consensus 304 ~~a~~aGaD~i~vg 317 (505)
T PLN02274 304 QNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHcCcCEEEEC
Confidence 99999999999765
No 405
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=91.33 E-value=4.1 Score=41.48 Aligned_cols=120 Identities=23% Similarity=0.297 Sum_probs=73.0
Q ss_pred CCEEEEecCC-------------CChhhHHHHHHHHHHcCCcEEEEecCCccC-CCCCCCCCcccccCCCCCCcCccchH
Q 012517 316 PPLLVKIAPD-------------LSKEDLEDIAAVAVALRLDGLIISNTTISR-PDPVSKNPVAKETGGLSGKPLLSLSN 381 (462)
Q Consensus 316 ~Pv~vKispd-------------l~~~~~~~ia~~~~~~GvdgIivsNTt~~r-~~~~~~~~~~~~~GGlSG~~l~~~al 381 (462)
.||||.-.++ ++.+.+.+.++.+.+.|+.+|++....... .|.. ....+.-.. ...
T Consensus 28 ~PlFv~e~~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~-------gs~A~~~~g---~v~ 97 (320)
T cd04823 28 LPLFVHEGENQREPIPSMPGVFRLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSED-------GSEAYNPDN---LVC 97 (320)
T ss_pred eeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcc-------cccccCCCC---hHH
Confidence 5888865543 244688899999999999999998763211 1111 111122111 245
Q ss_pred HHHHHHHHhcC----------------CCccEEEecCCCCH-------HHHHHHHHhCCCEEEEchhhhhcCCChHHHHH
Q 012517 382 NILKEMYLLTR----------------GKIPLIGCGGISSG-------EDAYRKIRAGATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 382 ~~v~~i~~~~~----------------~~ipIIg~GGI~s~-------~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~ 438 (462)
+.|+.+++.++ |..-|+-.|+|.+- +.|...-+||||.|.=.--+ . +-+..|+
T Consensus 98 ~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~~~~idND~Tl~~L~~~Avs~A~AGADiVAPSdMM--D--GrV~aIR 173 (320)
T cd04823 98 RAIRAIKEAFPELGIITDVALDPYTSHGHDGIVRDGGILNDETVEVLCKQALVQAEAGADIVAPSDMM--D--GRIGAIR 173 (320)
T ss_pred HHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccch--h--hHHHHHH
Confidence 67788888875 23344445677764 46777778999988533322 3 3444444
Q ss_pred HHHHHHHHHcCCCCH
Q 012517 439 AELAECLERDGFKSI 453 (462)
Q Consensus 439 ~~L~~~l~~~G~~si 453 (462)
+.|++.||.++
T Consensus 174 ----~aLd~~g~~~v 184 (320)
T cd04823 174 ----EALDAEGFTNV 184 (320)
T ss_pred ----HHHHHCCCCCC
Confidence 55667898765
No 406
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=91.30 E-value=2.1 Score=43.43 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=46.2
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
+..+.++|+|.|-+-|-+. +.++++.+..++++.|.++|||+ .+.+.++.+
T Consensus 221 a~ea~~~gaDiI~LDn~s~----------------------------e~~~~av~~~~~~~~ieaSGGI~-~~ni~~yA~ 271 (296)
T PRK09016 221 LDQALKAGADIIMLDNFTT----------------------------EQMREAVKRTNGRALLEVSGNVT-LETLREFAE 271 (296)
T ss_pred HHHHHHcCCCEEEeCCCCh----------------------------HHHHHHHHhhcCCeEEEEECCCC-HHHHHHHHh
Confidence 3445679999998877542 22333333444578999999996 899999999
Q ss_pred hCCCEEEEchh
Q 012517 415 AGATLVQLYTA 425 (462)
Q Consensus 415 aGAd~Vqv~Ta 425 (462)
+|+|.+.++.-
T Consensus 272 tGVD~Is~gal 282 (296)
T PRK09016 272 TGVDFISVGAL 282 (296)
T ss_pred cCCCEEEeCcc
Confidence 99999988774
No 407
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=91.30 E-value=1 Score=41.93 Aligned_cols=77 Identities=25% Similarity=0.279 Sum_probs=56.9
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
+.+.+-++=- +|...+....+.+++.+.|.|-+- | | ..-+.++++.+.+ .
T Consensus 95 ~~~aIqR~Fi-lDS~Al~~~~~~i~~~~pD~iEvL------P------------G---------v~Pkvi~~i~~~t--~ 144 (181)
T COG1954 95 GILAIQRLFI-LDSIALEKGIKQIEKSEPDFIEVL------P------------G---------VMPKVIKEITEKT--H 144 (181)
T ss_pred CCceeeeeee-ecHHHHHHHHHHHHHcCCCEEEEc------C------------c---------ccHHHHHHHHHhc--C
Confidence 4455444421 344456677777788888887542 1 1 1336789999999 7
Q ss_pred ccEEEecCCCCHHHHHHHHHhCCCEEE
Q 012517 395 IPLIGCGGISSGEDAYRKIRAGATLVQ 421 (462)
Q Consensus 395 ipIIg~GGI~s~~dA~e~i~aGAd~Vq 421 (462)
+|||+-|=|.+-||+.++|++||-+|.
T Consensus 145 ~piIAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 145 IPIIAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred CCEEeccccccHHHHHHHHHhCcEEEe
Confidence 999999999999999999999998875
No 408
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=91.28 E-value=2.4 Score=43.97 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=71.4
Q ss_pred cCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCC-hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccc
Q 012517 289 QGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLS-KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKE 367 (462)
Q Consensus 289 q~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~-~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~ 367 (462)
.+++ +.+-++.+++.. .+.|+++=|..... .-+..++.+++...++|++.+.=.. .. + .. .
T Consensus 103 ~~~~-~~~~~~~vr~~~--------p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~-~q-e-~~------~ 164 (352)
T PRK05437 103 KDPE-LADSFSVVRKVA--------PDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNP-LQ-E-LV------Q 164 (352)
T ss_pred cChh-hHHHHHHHHHHC--------CCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcc-ch-h-hc------C
Confidence 3444 566666666542 47899987754322 1134556666777788998774211 00 0 00 0
Q ss_pred cCCCCCCcCccchHHHHHHHHHhcCCCccEEE--ecCCCCHHHHHHHHHhCCCEEEEch
Q 012517 368 TGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG--CGGISSGEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 368 ~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg--~GGI~s~~dA~e~i~aGAd~Vqv~T 424 (462)
.+ |..-+...++.++.+++.+ ++||+. +|.-.+.++|....++|+|.|-+..
T Consensus 165 p~---g~~~f~~~le~i~~i~~~~--~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 165 PE---GDRDFRGWLDNIAEIVSAL--PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred CC---CcccHHHHHHHHHHHHHhh--CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 11 1112333467889999988 689886 6666889999999999999999944
No 409
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.26 E-value=3.5 Score=41.30 Aligned_cols=94 Identities=21% Similarity=0.294 Sum_probs=60.1
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCC-CCCCcCccchHHHHHHHHHhcCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGG-LSGKPLLSLSNNILKEMYLLTRG 393 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GG-lSG~~l~~~al~~v~~i~~~~~~ 393 (462)
+.|+++=|... +.+++.+.++.++++|+|+|.+.=. .|. ....|. +-+.+ ....++++.+++.+
T Consensus 89 ~~p~ivsi~g~-~~~~~~~~a~~~~~~G~d~iElN~~---cP~-------~~~~g~~~~~~~--~~~~eiv~~vr~~~-- 153 (296)
T cd04740 89 GTPVIASIAGS-TVEEFVEVAEKLADAGADAIELNIS---CPN-------VKGGGMAFGTDP--EAVAEIVKAVKKAT-- 153 (296)
T ss_pred CCcEEEEEecC-CHHHHHHHHHHHHHcCCCEEEEECC---CCC-------CCCCcccccCCH--HHHHHHHHHHHhcc--
Confidence 68999988754 4568899999999999999987411 110 001111 11222 34568888999888
Q ss_pred CccEEE--ecCCCCHHH-HHHHHHhCCCEEEEc
Q 012517 394 KIPLIG--CGGISSGED-AYRKIRAGATLVQLY 423 (462)
Q Consensus 394 ~ipIIg--~GGI~s~~d-A~e~i~aGAd~Vqv~ 423 (462)
++||+. ...+.+..+ +....++|||.+.+.
T Consensus 154 ~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 154 DVPVIVKLTPNVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 688875 233444444 334556999988663
No 410
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.21 E-value=14 Score=36.71 Aligned_cols=87 Identities=26% Similarity=0.373 Sum_probs=52.5
Q ss_pred HHHHHHHHHcc-cCcEEEEec--cCCCCCC-------cccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCC-
Q 012517 258 DYVQGVHTLSQ-YADYLVINV--SSPNTPG-------LRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDL- 326 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNv--SsPnt~g-------lr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl- 326 (462)
...+.++.+.+ .+|+|||-| |-|...| .|.|++.-.+.++++.+++.+.+ ..+.|+++=.=-+.
T Consensus 27 ~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~-----~~~~p~vlm~Y~N~i 101 (258)
T PRK13111 27 TSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREK-----DPTIPIVLMTYYNPI 101 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-----CCCCCEEEEecccHH
Confidence 45555554443 599999974 6666654 23344444455666666665421 24678763321111
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEe
Q 012517 327 SKEDLEDIAAVAVALRLDGLIIS 349 (462)
Q Consensus 327 ~~~~~~~ia~~~~~~GvdgIivs 349 (462)
-.--++++++.+.++|+||+++-
T Consensus 102 ~~~G~e~f~~~~~~aGvdGviip 124 (258)
T PRK13111 102 FQYGVERFAADAAEAGVDGLIIP 124 (258)
T ss_pred hhcCHHHHHHHHHHcCCcEEEEC
Confidence 11146788999999999999984
No 411
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=91.15 E-value=7.3 Score=38.59 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=51.5
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC-CccEEEecCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG-KIPLIGCGGIS 404 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~-~ipIIg~GGI~ 404 (462)
.+.+.+.++++.+.+.|+|.|.+..|+-. . ......+.++.+++.++. ++||-.=+==+
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~-----------------~---~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~ 199 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIPDTVGY-----------------L---TPEEFGELIKKLKENVPNIKVPISVHCHND 199 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCC-----------------C---CHHHHHHHHHHHHHhCCCCceeEEEEecCC
Confidence 45678899999999999999988877511 1 112355778888888742 26664433322
Q ss_pred C---HHHHHHHHHhCCCEEEEc
Q 012517 405 S---GEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 405 s---~~dA~e~i~aGAd~Vqv~ 423 (462)
- -.-+++.+++||+.|...
T Consensus 200 ~GlA~An~laAi~aG~~~iD~s 221 (268)
T cd07940 200 LGLAVANSLAAVEAGARQVECT 221 (268)
T ss_pred cchHHHHHHHHHHhCCCEEEEE
Confidence 2 234577788999977544
No 412
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=91.15 E-value=7.6 Score=39.06 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=59.3
Q ss_pred HHHHHHHHHcc-c-CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHH
Q 012517 258 DYVQGVHTLSQ-Y-ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA 335 (462)
Q Consensus 258 dy~~~~~~l~~-~-aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia 335 (462)
.+.+.++.+.+ . +|.|.+|=|. |.-.....+.-.++++.+.+.+ ..++||++=++.. +.++..+++
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~Gst----GE~~~Lt~eEr~~~~~~~~~~~-------~~~~pvi~gv~~~-~t~~~i~la 89 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGST----GENFMLSTEEKKEIFRIAKDEA-------KDQIALIAQVGSV-NLKEAVELG 89 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcc----cccccCCHHHHHHHHHHHHHHh-------CCCCcEEEecCCC-CHHHHHHHH
Confidence 56666666543 5 8999998653 3222334455567777776664 2468999998743 345888999
Q ss_pred HHHHHcCCcEEEEecCCcc
Q 012517 336 AVAVALRLDGLIISNTTIS 354 (462)
Q Consensus 336 ~~~~~~GvdgIivsNTt~~ 354 (462)
+.+++.|+|+|.+....+.
T Consensus 90 ~~a~~~Gad~v~v~~P~y~ 108 (290)
T TIGR00683 90 KYATELGYDCLSAVTPFYY 108 (290)
T ss_pred HHHHHhCCCEEEEeCCcCC
Confidence 9999999999999866443
No 413
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=91.13 E-value=7.9 Score=38.78 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=58.6
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ ..|.+.+|=|. |.-.....+.-.++++.+.+.+ ..+.||++=+... +.++..+.++
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~----GE~~~ls~~Er~~~~~~~~~~~-------~~~~~vi~gv~~~-~~~~~i~~a~ 90 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTT----GESPTLTHEEHEELIRAVVEAV-------NGRVPVIAGTGSN-STAEAIELTK 90 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcC----CccccCCHHHHHHHHHHHHHHh-------CCCCcEEeecCCc-hHHHHHHHHH
Confidence 55555665554 59999987543 3333344455567777777664 2468999988763 4468889999
Q ss_pred HHHHcCCcEEEEecCCc
Q 012517 337 VAVALRLDGLIISNTTI 353 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~ 353 (462)
.+++.|+|+|.+.-..+
T Consensus 91 ~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 91 FAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHcCCCEEEECCCcC
Confidence 99999999999976543
No 414
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=91.12 E-value=5.3 Score=39.81 Aligned_cols=95 Identities=24% Similarity=0.197 Sum_probs=59.6
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
+.|+++=|... +.+++.+.++.+.+.|+|+|.+.-..... .++-.-........++++.+++.+ +
T Consensus 98 ~~pvi~si~g~-~~~~~~~~a~~~~~~G~d~ielN~~cP~~------------~~~~~~~~~~~~~~eiv~~vr~~~--~ 162 (289)
T cd02810 98 GQPLIASVGGS-SKEDYVELARKIERAGAKALELNLSCPNV------------GGGRQLGQDPEAVANLLKAVKAAV--D 162 (289)
T ss_pred CCeEEEEeccC-CHHHHHHHHHHHHHhCCCEEEEEcCCCCC------------CCCcccccCHHHHHHHHHHHHHcc--C
Confidence 68999988654 45688999999999999999874221100 000000001123457888888887 6
Q ss_pred ccEEE-ecCCCCHHH----HHHHHHhCCCEEEEch
Q 012517 395 IPLIG-CGGISSGED----AYRKIRAGATLVQLYT 424 (462)
Q Consensus 395 ipIIg-~GGI~s~~d----A~e~i~aGAd~Vqv~T 424 (462)
+||+. .++..+.+| +....++|||.+.+..
T Consensus 163 ~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 163 IPLLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 78664 455555333 3444468999999863
No 415
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.12 E-value=4.5 Score=41.78 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCC
Q 012517 295 KDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGK 374 (462)
Q Consensus 295 ~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~ 374 (462)
.+.+++|+++. +.+..+++-....++.++..++++.+.+.+++.|- -
T Consensus 173 ~~~v~air~~~-------g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e------------------- 219 (355)
T cd03321 173 LAVVRSIRQAV-------GDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWIE-------E------------------- 219 (355)
T ss_pred HHHHHHHHHhh-------CCCCEEEEeCCCCcCHHHHHHHHHHHHcCCCCEEE-------C-------------------
Confidence 46677777654 34678888777668878899999999988876652 0
Q ss_pred cCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC-CCEEEEchhhh
Q 012517 375 PLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFA 427 (462)
Q Consensus 375 ~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tali 427 (462)
|+.+...+..+++++.+ .+||.+.-.+.+.+|..++++.| +|.||+--..+
T Consensus 220 P~~~~d~~~~~~l~~~~--~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~ 271 (355)
T cd03321 220 PTLQHDYEGHARIASAL--RTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKI 271 (355)
T ss_pred CCCCcCHHHHHHHHHhc--CCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhh
Confidence 11223456678889988 69999888899999999999976 89998876663
No 416
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=90.91 E-value=3.1 Score=43.67 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=35.7
Q ss_pred chHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 012517 379 LSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 379 ~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~T 424 (462)
.+.+-|+.+++.. +.||| +.||.+.+||...+++|+|.|.+.-
T Consensus 232 ltW~di~~lr~~~--~~pvi-vKgV~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 232 ISWKDLEWIRDFW--DGPMV-IKGILDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred CCHHHHHHHHHhC--CCCEE-EEecCCHHHHHHHHhCCCCEEEECC
Confidence 3456689999998 57765 5689999999999999999998753
No 417
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=90.86 E-value=5.2 Score=41.54 Aligned_cols=136 Identities=19% Similarity=0.143 Sum_probs=95.7
Q ss_pred HHHHHHHHHc-ccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLS-QYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~-~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
++...++.+. ..++.+-+.+.++... .-.+.+++|+++. +.+..|++-....++.++...+++
T Consensus 146 ~~~~~~~~~~~~G~~~~Klk~g~~~~~---------~d~~~v~avRe~~-------g~~~~l~iDan~~~~~~~A~~~~~ 209 (372)
T COG4948 146 MAAEAARALVELGFKALKLKVGVGDGD---------EDLERVRALREAV-------GDDVRLMVDANGGWTLEEAIRLAR 209 (372)
T ss_pred HHHHHHHHHHhcCCceEEecCCCCchH---------HHHHHHHHHHHHh-------CCCceEEEeCCCCcCHHHHHHHHH
Confidence 5555555555 3599999998876421 2346777777765 346788888777788777888899
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+++.++..+- .|+.+-..+..+++++.+ .+||.+-=-+.+..|..+.++.|
T Consensus 210 ~l~~~~l~~iE--------------------------eP~~~~d~~~~~~l~~~~--~~PIa~gEs~~~~~~~~~l~~~~ 261 (372)
T COG4948 210 ALEEYGLEWIE--------------------------EPLPPDDLEGLRELRAAT--STPIAAGESVYTRWDFRRLLEAG 261 (372)
T ss_pred HhcccCcceEE--------------------------CCCCccCHHHHHHHHhcC--CCCEecCcccccHHHHHHHHHcC
Confidence 88888755431 123334567788888887 48999999999999999999998
Q ss_pred -CCEEEEchhhhhcCCChHHHHH
Q 012517 417 -ATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 417 -Ad~Vqv~Tali~~GP~~i~~i~ 438 (462)
+|.||+=.+-+ .|..-..+|.
T Consensus 262 a~div~~d~~~~-GGite~~kia 283 (372)
T COG4948 262 AVDIVQPDLARV-GGITEALKIA 283 (372)
T ss_pred CCCeecCCcccc-CCHHHHHHHH
Confidence 89988865552 3444344443
No 418
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=90.83 E-value=18 Score=40.34 Aligned_cols=166 Identities=14% Similarity=0.204 Sum_probs=94.9
Q ss_pred EEEecCCCCCH-HHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCC-CC-EE
Q 012517 243 GVNIGKNKTSE-DAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGP-PP-LL 319 (462)
Q Consensus 243 gvnig~nk~t~-~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~-~P-v~ 319 (462)
|.|+-+-+.-+ +-++.|++.+..-+ .|.+-| |.+- .+.+.+..-++++++. +.. .+ |-
T Consensus 84 g~N~vGy~~~~d~vv~~~v~~a~~~G--idv~Ri-fd~l--------nd~~n~~~~i~~~k~~--------G~~~~~~i~ 144 (596)
T PRK14042 84 GQNLLGYRNYADDVVRAFVKLAVNNG--VDVFRV-FDAL--------NDARNLKVAIDAIKSH--------KKHAQGAIC 144 (596)
T ss_pred cccccccccCChHHHHHHHHHHHHcC--CCEEEE-cccC--------cchHHHHHHHHHHHHc--------CCEEEEEEE
Confidence 44553322233 34556666655544 787665 2222 2334555555555543 111 11 22
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE
Q 012517 320 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG 399 (462)
Q Consensus 320 vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg 399 (462)
.=.+|-.+.+.+.++++.+.+.|+|.|.+..|. |+. ......++++.+++.+ ++||-.
T Consensus 145 yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDta-----------------G~l---~P~~v~~lv~alk~~~--~ipi~~ 202 (596)
T PRK14042 145 YTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMA-----------------GLL---TPTVTVELYAGLKQAT--GLPVHL 202 (596)
T ss_pred ecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcc-----------------cCC---CHHHHHHHHHHHHhhc--CCEEEE
Confidence 224777788899999999999999998887664 111 0123568888998887 477754
Q ss_pred ecCCCCH---HHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 400 CGGISSG---EDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 400 ~GGI~s~---~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
=+==+.+ .-.++++++||+.|...-+=+-++++- --.+.+...|+..|+.
T Consensus 203 H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~tGn--~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 203 HSHSTSGLASICHYEAVLAGCNHIDTAISSFSGGASH--PPTEALVAALTDTPYD 255 (596)
T ss_pred EeCCCCCcHHHHHHHHHHhCCCEEEeccccccCCCCc--HhHHHHHHHHHhcCCC
Confidence 4333333 455677889999988775544444431 2223444445555544
No 419
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=90.79 E-value=1.8 Score=43.58 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=47.2
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
++.+.++|+|.|.+.|-+.. ...+.++.+++. .+++.|.++|||+ .+.+.++..
T Consensus 201 a~ea~~~GaDiI~lDn~~~e------------------------~l~~~v~~l~~~-~~~~~leasGGI~-~~ni~~ya~ 254 (277)
T TIGR01334 201 ALTVLQASPDILQLDKFTPQ------------------------QLHHLHERLKFF-DHIPTLAAAGGIN-PENIADYIE 254 (277)
T ss_pred HHHHHHcCcCEEEECCCCHH------------------------HHHHHHHHHhcc-CCCEEEEEECCCC-HHHHHHHHh
Confidence 34456799999999876421 123444444432 3478999999996 999999999
Q ss_pred hCCCEEEEchh
Q 012517 415 AGATLVQLYTA 425 (462)
Q Consensus 415 aGAd~Vqv~Ta 425 (462)
+|+|.+.++.-
T Consensus 255 ~GvD~is~gal 265 (277)
T TIGR01334 255 AGIDLFITSAP 265 (277)
T ss_pred cCCCEEEeCcc
Confidence 99999977664
No 420
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.79 E-value=2.5 Score=42.78 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=46.9
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
+..+.++|+|.|-+-|-++ +.+++..+.+++++.|-++|||+ .+.+.++.+
T Consensus 218 a~eA~~aGaDiImLDnmsp----------------------------e~l~~av~~~~~~~~lEaSGGIt-~~ni~~yA~ 268 (294)
T PRK06978 218 LETALAHGAQSVLLDNFTL----------------------------DMMREAVRVTAGRAVLEVSGGVN-FDTVRAFAE 268 (294)
T ss_pred HHHHHHcCCCEEEECCCCH----------------------------HHHHHHHHhhcCCeEEEEECCCC-HHHHHHHHh
Confidence 3445679999998887642 23333444444578899999996 999999999
Q ss_pred hCCCEEEEchhh
Q 012517 415 AGATLVQLYTAF 426 (462)
Q Consensus 415 aGAd~Vqv~Tal 426 (462)
.|.|.+.++.-.
T Consensus 269 tGVD~IS~galt 280 (294)
T PRK06978 269 TGVDRISIGALT 280 (294)
T ss_pred cCCCEEEeCccc
Confidence 999999887643
No 421
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=90.77 E-value=1.8 Score=41.81 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhc
Q 012517 380 SNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYG 429 (462)
Q Consensus 380 al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~ 429 (462)
.+...+++.+..+.++-+++--||+|++|+..+-.+|.++|-++-++|.+
T Consensus 223 DlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 223 DLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred chhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhc
Confidence 34444566666677899999999999999999999999999999999864
No 422
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=90.74 E-value=5.3 Score=40.92 Aligned_cols=97 Identities=21% Similarity=0.174 Sum_probs=64.1
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
+.||++-|... +.+++.+.++.+++.|+|+|.+ |-. .+ +. . .+..|..+.....++++.+++.+ +
T Consensus 99 ~~pvi~si~g~-~~~~~~~~a~~~~~~gad~iEl-N~s--~~------~~--~-~~~~g~~~~~~~~eiv~~v~~~~--~ 163 (325)
T cd04739 99 SIPVIASLNGV-SAGGWVDYARQIEEAGADALEL-NIY--AL------PT--D-PDISGAEVEQRYLDILRAVKSAV--T 163 (325)
T ss_pred CCeEEEEeCCC-CHHHHHHHHHHHHhcCCCEEEE-eCC--CC------CC--C-CCcccchHHHHHHHHHHHHHhcc--C
Confidence 58999999653 4578899999999999999976 332 00 00 0 11123233345568889999888 6
Q ss_pred ccEEEe--cCCCCHHHHHH-HHHhCCCEEEEchhh
Q 012517 395 IPLIGC--GGISSGEDAYR-KIRAGATLVQLYTAF 426 (462)
Q Consensus 395 ipIIg~--GGI~s~~dA~e-~i~aGAd~Vqv~Tal 426 (462)
+||+.= ..+.+..+..+ ..++|||.|-+.-.+
T Consensus 164 iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 164 IPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 888864 34445555555 456899999886654
No 423
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=90.67 E-value=4 Score=41.52 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhh
Q 012517 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 393 ~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+++.|+++||| +.+.+.++.+.|+|.+.+++.+..
T Consensus 244 ~~~~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 244 KHVKIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred CCeEEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 46789999999 799999999999999999998843
No 424
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=90.67 E-value=5.2 Score=36.67 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=63.9
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
++.+.++++.+ .+|++.+.+...+ .....++++.+++.++. .+.++++. + ..+
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~~~---------~~~~~~~~~~i~~~~~~------~~~~l~~~---~--------~~~ 66 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKDLS---------ARELLELARALRELCRK------YGVPLIIN---D--------RVD 66 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCC---------HHHHHHHHHHHHHHHHH------hCCeEEEe---C--------hHH
Confidence 45555555554 4899888764321 12334556666655432 25677763 1 245
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+.+.|+|||++..... ....++++++. .. +++ ..+.+.+++.+....|
T Consensus 67 ~a~~~g~~~vh~~~~~~--------------------------~~~~~~~~~~~---~~-~~g-~~~~t~~~~~~~~~~g 115 (196)
T cd00564 67 LALAVGADGVHLGQDDL--------------------------PVAEARALLGP---DL-IIG-VSTHSLEEALRAEELG 115 (196)
T ss_pred HHHHcCCCEEecCcccC--------------------------CHHHHHHHcCC---CC-EEE-eeCCCHHHHHHHhhcC
Confidence 67889999987653210 11222222221 12 222 3357899999999999
Q ss_pred CCEEEEchh
Q 012517 417 ATLVQLYTA 425 (462)
Q Consensus 417 Ad~Vqv~Ta 425 (462)
+|.|.+..-
T Consensus 116 ~d~i~~~~~ 124 (196)
T cd00564 116 ADYVGFGPV 124 (196)
T ss_pred CCEEEECCc
Confidence 999988654
No 425
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=90.61 E-value=2.2 Score=44.80 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=55.4
Q ss_pred CChhhHHHH-------HHHHHHcCCcEEEEecCCccC-CCC-CC--CCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 326 LSKEDLEDI-------AAVAVALRLDGLIISNTTISR-PDP-VS--KNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 326 l~~~~~~~i-------a~~~~~~GvdgIivsNTt~~r-~~~-~~--~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
++.+||.++ |+.+.++|+|||-++..-.+. ... +. .+.-..++|| |=.--....+++|+.+++.++.+
T Consensus 140 mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGG-slenR~rf~~eii~~vr~~~g~~ 218 (382)
T cd02931 140 LTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGG-SLENRLRFAIEIVEEIKARCGED 218 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCC-CHHHHhHHHHHHHHHHHHhcCCC
Confidence 566665544 445678999999776321000 000 00 0111235665 21112234679999999998766
Q ss_pred ccEEE----------------------ecCCCCHHHHHHHH----HhCCCEEEEchhh
Q 012517 395 IPLIG----------------------CGGISSGEDAYRKI----RAGATLVQLYTAF 426 (462)
Q Consensus 395 ipIIg----------------------~GGI~s~~dA~e~i----~aGAd~Vqv~Tal 426 (462)
+||.. -|| .+.+|+.+++ ++|+|+|.+..+.
T Consensus 219 f~v~vri~~~~~~~~~~~~~~~~~~~~~~g-~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 219 FPVSLRYSVKSYIKDLRQGALPGEEFQEKG-RDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred ceEEEEEechhhccccccccccccccccCC-CCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 66543 123 3567665554 3799999986543
No 426
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=90.60 E-value=9.8 Score=38.40 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH-HH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG-ED 408 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~-~d 408 (462)
+.++..+.+.+.|+|.+-++..| ..|-|.|+ .+..+.+++|++.+ ++|++-=||=..+ +|
T Consensus 154 ~pe~a~~Fv~~TgvD~LAvaiGt--------------~HG~Y~~p---~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~ 214 (283)
T PRK07998 154 EPEKVKDFVERTGCDMLAVSIGN--------------VHGLEDIP---RIDIPLLKRIAEVS--PVPLVIHGGSGIPPEI 214 (283)
T ss_pred CHHHHHHHHHHhCcCeeehhccc--------------cccCCCCC---CcCHHHHHHHHhhC--CCCEEEeCCCCCCHHH
Confidence 56677788889999999887654 12334442 23568899999998 7999999987777 67
Q ss_pred HHHHHHhCCCEEEEchhhh
Q 012517 409 AYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali 427 (462)
..+++..|..=|-++|.+.
T Consensus 215 ~~~ai~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 215 LRSFVNYKVAKVNIASDLR 233 (283)
T ss_pred HHHHHHcCCcEEEECHHHH
Confidence 7888999999999999984
No 427
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=90.43 E-value=3.9 Score=38.45 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=63.9
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
++.+.++.+.+ .+|++++.+...+ .....++++.+++.++. .+.|+++. +.++
T Consensus 22 ~~~~~~~~~~~~gv~~v~lr~~~~~---------~~~~~~~~~~~~~~~~~------~~~~l~~~-----------~~~~ 75 (212)
T PRK00043 22 DLLEVVEAALEGGVTLVQLREKGLD---------TRERLELARALKELCRR------YGVPLIVN-----------DRVD 75 (212)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCC---------HHHHHHHHHHHHHHHHH------hCCeEEEe-----------ChHH
Confidence 45555655554 5899998764322 12334455555554432 25678762 2356
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+.+.|+|+|++.... . ....+++++.. .+ ++|+ -+.|.+++.+....|
T Consensus 76 ~a~~~gad~vh~~~~~--~------------------------~~~~~~~~~~~---~~-~~g~-~~~t~~e~~~a~~~g 124 (212)
T PRK00043 76 LALAVGADGVHLGQDD--L------------------------PVADARALLGP---DA-IIGL-STHTLEEAAAALAAG 124 (212)
T ss_pred HHHHcCCCEEecCccc--C------------------------CHHHHHHHcCC---CC-EEEE-eCCCHHHHHHHhHcC
Confidence 7788999998874321 0 11222222221 12 2222 246899999999999
Q ss_pred CCEEEEch
Q 012517 417 ATLVQLYT 424 (462)
Q Consensus 417 Ad~Vqv~T 424 (462)
||.|.++.
T Consensus 125 aD~v~~~~ 132 (212)
T PRK00043 125 ADYVGVGP 132 (212)
T ss_pred CCEEEECC
Confidence 99998864
No 428
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.40 E-value=0.74 Score=45.55 Aligned_cols=115 Identities=16% Similarity=0.071 Sum_probs=76.0
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC
Q 012517 326 LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS 405 (462)
Q Consensus 326 l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s 405 (462)
.++|++.++|+.+.+.|+..+--+ ...-|+ ....+-|..+ ..++.+.++++.+ .+|++. -|.+
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g-~~kpRt----------s~~sf~G~G~--~gl~~L~~~~~~~--Gl~~~T--ev~d 88 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGG-AYKPRT----------SAASFQGLGL--QGIRYLHEVCQEF--GLLSVS--EIMS 88 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEec-ccCCCC----------CCcccCCCCH--HHHHHHHHHHHHc--CCCEEE--eeCC
Confidence 456789999999999998765322 111111 1122334433 2688899999988 689888 5899
Q ss_pred HHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcC-CCCHHHhhcc
Q 012517 406 GEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDG-FKSIIEAVGA 459 (462)
Q Consensus 406 ~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G-~~si~e~~G~ 459 (462)
.+++....+ .+|++||++..+.+ ..+.+.+.+.-+-.+-+.| +.+++|+.++
T Consensus 89 ~~~v~~~~e-~vdilqIgs~~~~n-~~LL~~va~tgkPVilk~G~~~t~~e~~~A 141 (250)
T PRK13397 89 ERQLEEAYD-YLDVIQVGARNMQN-FEFLKTLSHIDKPILFKRGLMATIEEYLGA 141 (250)
T ss_pred HHHHHHHHh-cCCEEEECcccccC-HHHHHHHHccCCeEEEeCCCCCCHHHHHHH
Confidence 999998888 69999999999764 5555555332222223455 6677766553
No 429
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=90.22 E-value=1 Score=43.92 Aligned_cols=104 Identities=23% Similarity=0.263 Sum_probs=73.5
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ 394 (462)
+.-=+.||-|+-+ ++..++++.+.++|.|+|.+..++- .. .+...+.++++++.. +
T Consensus 15 ~~~H~tliDP~k~-~~~~ei~~~~~~~GTDaImIGGS~g-----------------vt----~~~~~~~v~~ik~~~--~ 70 (240)
T COG1646 15 GKRHLTLIDPDKT-EEADEIAEAAAEAGTDAIMIGGSDG-----------------VT----EENVDNVVEAIKERT--D 70 (240)
T ss_pred cceEEEEeCcccc-cccHHHHHHHHHcCCCEEEECCccc-----------------cc----HHHHHHHHHHHHhhc--C
Confidence 3455789999865 5788999999999999999987751 11 123567888898876 7
Q ss_pred ccEEEe-cCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcC
Q 012517 395 IPLIGC-GGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDG 449 (462)
Q Consensus 395 ipIIg~-GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G 449 (462)
+|+|-- |++. .+.-+||.+-+-|-+--.+|.|+.....+-.....+.+
T Consensus 71 lPvilfP~~~~-------~is~~aDavff~svLNS~n~~~i~gaq~~~a~~~~~~~ 119 (240)
T COG1646 71 LPVILFPGSPS-------GISPYADAVFFPSVLNSDNPYWIVGAQVEGAKLVGKLG 119 (240)
T ss_pred CCEEEecCChh-------ccCccCCeEEEEEEecCCCcccccchhhhhhHHHHhhh
Confidence 887753 3332 23338999999888877778888776555444444444
No 430
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=90.20 E-value=1.8 Score=42.89 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=78.4
Q ss_pred CCCEEE---EecCCCC----hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHH
Q 012517 315 PPPLLV---KIAPDLS----KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEM 387 (462)
Q Consensus 315 ~~Pv~v---Kispdl~----~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i 387 (462)
+.+|+. |-||... +-+..++++..++.|+++|.+.-- ...+.| +.+.++.+
T Consensus 45 ~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd----------------~~~F~G------s~e~L~~v 102 (254)
T COG0134 45 KPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTD----------------PKYFQG------SFEDLRAV 102 (254)
T ss_pred CceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecC----------------ccccCC------CHHHHHHH
Confidence 567766 5577643 236788999999999999976411 112223 67899999
Q ss_pred HHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCCC
Q 012517 388 YLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKS 452 (462)
Q Consensus 388 ~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~s 452 (462)
++.+ .+||..===|-++.++++...+|||+|.+--+++-+ +-.++|.++-.+.|..-
T Consensus 103 ~~~v--~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~------~~l~el~~~A~~LGm~~ 159 (254)
T COG0134 103 RAAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDD------EQLEELVDRAHELGMEV 159 (254)
T ss_pred HHhc--CCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCH------HHHHHHHHHHHHcCCee
Confidence 9999 799999888999999999999999999988887632 22334444445555443
No 431
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.16 E-value=18 Score=36.09 Aligned_cols=43 Identities=26% Similarity=0.275 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec
Q 012517 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG 401 (462)
Q Consensus 329 ~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G 401 (462)
+++.+-+++++++|+|+|.+-.. ..+..+++.+.+ ++|+||.|
T Consensus 161 ~~~i~ra~a~~eAGA~~i~lE~v----------------------------~~~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 161 EKLLEDAKALEEAGAFALVLECV----------------------------PAELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCC----------------------------CHHHHHHHHHhC--CCCEEEec
Confidence 36677788889999999986422 125778899998 79999876
No 432
>PRK15452 putative protease; Provisional
Probab=90.15 E-value=9 Score=41.13 Aligned_cols=117 Identities=13% Similarity=0.007 Sum_probs=68.9
Q ss_pred cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhh---HHHHHHHHHHcCCcE
Q 012517 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKED---LEDIAAVAVALRLDG 345 (462)
Q Consensus 269 ~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~---~~~ia~~~~~~Gvdg 345 (462)
.||.|-+-...-+..........+.+.+.++.+++ ..+.|+|.+..-..+++ +.+..+.+.+.|+||
T Consensus 23 GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~----------~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDg 92 (443)
T PRK15452 23 GADAVYAGQPRYSLRVRNNEFNHENLALGINEAHA----------LGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDA 92 (443)
T ss_pred CCCEEEECCCccchhhhccCCCHHHHHHHHHHHHH----------cCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCE
Confidence 49998885543332100001122334444443322 35788888664433334 455566677999999
Q ss_pred EEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec--CCCCHHHHHHHHHhCCCEEEEc
Q 012517 346 LIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG--GISSGEDAYRKIRAGATLVQLY 423 (462)
Q Consensus 346 IivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G--GI~s~~dA~e~i~aGAd~Vqv~ 423 (462)
|++.|- ..+..+++..+ +++|+++- .|+|.+.+.-+.+.|++-|-+.
T Consensus 93 vIV~d~------------------------------G~l~~~ke~~p-~l~ih~stqlni~N~~a~~f~~~lG~~rvvLS 141 (443)
T PRK15452 93 LIMSDP------------------------------GLIMMVREHFP-EMPIHLSVQANAVNWATVKFWQQMGLTRVILS 141 (443)
T ss_pred EEEcCH------------------------------HHHHHHHHhCC-CCeEEEEecccCCCHHHHHHHHHCCCcEEEEC
Confidence 999863 22344444443 56676654 4778887777778888877777
Q ss_pred hhh
Q 012517 424 TAF 426 (462)
Q Consensus 424 Tal 426 (462)
+-+
T Consensus 142 rEL 144 (443)
T PRK15452 142 REL 144 (443)
T ss_pred CcC
Confidence 765
No 433
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=89.98 E-value=1.6 Score=42.24 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=59.2
Q ss_pred CCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC
Q 012517 325 DLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS 404 (462)
Q Consensus 325 dl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~ 404 (462)
+++.+.+..+++++...|++.|.+.- .-++|+.+++.. ++||..++ -
T Consensus 23 NFd~~~V~~i~~AA~~ggAt~vDIAa-----------------------------dp~LV~~~~~~s--~lPICVSa--V 69 (242)
T PF04481_consen 23 NFDAESVAAIVKAAEIGGATFVDIAA-----------------------------DPELVKLAKSLS--NLPICVSA--V 69 (242)
T ss_pred ccCHHHHHHHHHHHHccCCceEEecC-----------------------------CHHHHHHHHHhC--CCCeEeec--C
Confidence 45667899999999999999987641 236778888777 79998775 4
Q ss_pred CHHHHHHHHHhCCCEEEEc--hhhhhcCCC
Q 012517 405 SGEDAYRKIRAGATLVQLY--TAFAYGGPA 432 (462)
Q Consensus 405 s~~dA~e~i~aGAd~Vqv~--Tali~~GP~ 432 (462)
+++...+..++|||+|.++ -+|..+|-.
T Consensus 70 ep~~f~~aV~AGAdliEIGNfDsFY~qGr~ 99 (242)
T PF04481_consen 70 EPELFVAAVKAGADLIEIGNFDSFYAQGRR 99 (242)
T ss_pred CHHHHHHHHHhCCCEEEecchHHHHhcCCe
Confidence 6999999999999999997 467556643
No 434
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=89.84 E-value=4.9 Score=39.69 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC-----
Q 012517 251 TSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD----- 325 (462)
Q Consensus 251 ~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd----- 325 (462)
+.....+|++ +.+++|.|++-+-+.| ..+..++.+++.++-.++. ++ ++.|.
T Consensus 22 lg~~~~~dlL---e~ag~yID~~K~g~Gt------~~l~~~~~l~eki~l~~~~----------gV----~v~~GGtl~E 78 (244)
T PF02679_consen 22 LGLRYLEDLL---ESAGDYIDFLKFGWGT------SALYPEEILKEKIDLAHSH----------GV----YVYPGGTLFE 78 (244)
T ss_dssp --HHHHHHHH---HHHGGG-SEEEE-TTG------GGGSTCHHHHHHHHHHHCT----------T-----EEEE-HHHHH
T ss_pred CCHHHHHHHH---HHhhhhccEEEecCce------eeecCHHHHHHHHHHHHHc----------CC----eEeCCcHHHH
Confidence 4566555664 5578899999998754 2345566677766665432 33 33443
Q ss_pred --CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCC
Q 012517 326 --LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGI 403 (462)
Q Consensus 326 --l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI 403 (462)
.....+.+..+.+.+.|++.|-++|.++..+. +.-+++|+++++.- =.++-=+| -
T Consensus 79 ~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~--------------------~~r~~~I~~~~~~G--f~v~~EvG-~ 135 (244)
T PF02679_consen 79 VAYQQGKFDEYLEECKELGFDAIEISDGTIDLPE--------------------EERLRLIRKAKEEG--FKVLSEVG-K 135 (244)
T ss_dssp HHHHTT-HHHHHHHHHHCT-SEEEE--SSS---H--------------------HHHHHHHHHHCCTT--SEEEEEES--
T ss_pred HHHhcChHHHHHHHHHHcCCCEEEecCCceeCCH--------------------HHHHHHHHHHHHCC--CEEeeccc-C
Confidence 11236789999999999999999999875431 11234455544431 12333333 2
Q ss_pred CC------------HHHHHHHHHhCCCEEEEchh
Q 012517 404 SS------------GEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 404 ~s------------~~dA~e~i~aGAd~Vqv~Ta 425 (462)
.+ .+.+...|+|||+.|++=.-
T Consensus 136 K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 169 (244)
T PF02679_consen 136 KDPESDFSLDPEELIEQAKRDLEAGADKVIIEAR 169 (244)
T ss_dssp SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--T
T ss_pred CCchhcccCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 22 23566788999999998543
No 435
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=89.75 E-value=3.8 Score=42.15 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=69.3
Q ss_pred ccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCC-hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCccc
Q 012517 288 LQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLS-KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAK 366 (462)
Q Consensus 288 lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~-~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~ 366 (462)
+.+++..... +.+++. ..+.|+++-+...-. .....++.+++...++|++.+.-.... + ..
T Consensus 95 ~~~~~~~~~~-~~vr~~--------~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q--~-~~------ 156 (333)
T TIGR02151 95 LKDPETADTF-EVVREE--------APNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQ--E-LV------ 156 (333)
T ss_pred ccChhhHhHH-HHHHHh--------CCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccc--c-cc------
Confidence 3444544444 555553 257899998854311 112445556666667888876421110 0 00
Q ss_pred ccCCCCCCcCccchHHHHHHHHHhcCCCccEEE--ecCCCCHHHHHHHHHhCCCEEEEch
Q 012517 367 ETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG--CGGISSGEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 367 ~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg--~GGI~s~~dA~e~i~aGAd~Vqv~T 424 (462)
...|. .-+...++.++.+++.+ ++||+. +|.-.+.++|....++|+|+|-+..
T Consensus 157 ~p~g~---~~f~~~le~i~~i~~~~--~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 157 QPEGD---RNFKGWLEKIAEICSQL--SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred CCCCC---cCHHHHHHHHHHHHHhc--CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 01111 11233458899999988 689886 5656889999999999999999975
No 436
>PLN02623 pyruvate kinase
Probab=89.74 E-value=10 Score=41.90 Aligned_cols=150 Identities=19% Similarity=0.265 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChh
Q 012517 250 KTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKE 329 (462)
Q Consensus 250 k~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~ 329 (462)
..|+.+++|..-++ ...+||+-+.|- |+- +.+.++-+.+.+. +.+..+++||---...+
T Consensus 275 ~lTekD~~di~f~~---~~~vD~ialSFV-------r~a---~DV~~~r~~l~~~--------~~~~~iiakIEt~eaVe 333 (581)
T PLN02623 275 SITEKDWEDIKFGV---ENKVDFYAVSFV-------KDA---QVVHELKDYLKSC--------NADIHVIVKIESADSIP 333 (581)
T ss_pred CCCHHHHHHHHHHH---HcCCCEEEECCC-------CCH---HHHHHHHHHHHHc--------CCcceEEEEECCHHHHH
Confidence 35676666643332 234899888762 222 2333322222221 23678999994322223
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec--------
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG-------- 401 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G-------- 401 (462)
++++|++ |+|||.+.-.-++. +. |+ +.+...-.++++..++. .+|++...
T Consensus 334 NldeIl~-----g~DgImIgrgDLgv-----------el-g~--~~v~~~qk~Ii~~~~~~---gKpvivaTQMLESMi~ 391 (581)
T PLN02623 334 NLHSIIT-----ASDGAMVARGDLGA-----------EL-PI--EEVPLLQEEIIRRCRSM---GKPVIVATNMLESMIV 391 (581)
T ss_pred hHHHHHH-----hCCEEEECcchhhh-----------hc-Cc--HHHHHHHHHHHHHHHHh---CCCEEEECchhhhccc
Confidence 4444443 89999886332211 11 11 11111222333333333 47877543
Q ss_pred -CCCC---HHHHHHHHHhCCCEEEEchhhhhcC--C----ChHHHHHHHHHH
Q 012517 402 -GISS---GEDAYRKIRAGATLVQLYTAFAYGG--P----ALIPQIKAELAE 443 (462)
Q Consensus 402 -GI~s---~~dA~e~i~aGAd~Vqv~Tali~~G--P----~~i~~i~~~L~~ 443 (462)
..-+ ..|+...+..|+|+|+++.-..+ | | .+..+|.++.+.
T Consensus 392 ~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~-G~yPveaV~~m~~I~~~aE~ 442 (581)
T PLN02623 392 HPTPTRAEVSDIAIAVREGADAVMLSGETAH-GKFPLKAVKVMHTVALRTEA 442 (581)
T ss_pred CCCCCchhHHHHHHHHHcCCCEEEecchhhc-CcCHHHHHHHHHHHHHHHHh
Confidence 3222 36999999999999999965543 4 3 245555555544
No 437
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=89.60 E-value=5.2 Score=40.24 Aligned_cols=94 Identities=19% Similarity=0.308 Sum_probs=60.0
Q ss_pred CCCEEEEecCCCChhhHHHHHHHHHHcC-CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC
Q 012517 315 PPPLLVKIAPDLSKEDLEDIAAVAVALR-LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG 393 (462)
Q Consensus 315 ~~Pv~vKispdl~~~~~~~ia~~~~~~G-vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~ 393 (462)
+.|+++=|..+ +.+++.+.++.++++| +|+|-+ |-. -| .. ..||+.-..-.+...++++.+++.+
T Consensus 91 ~~p~i~si~g~-~~~~~~~~a~~~~~aG~~D~iEl-N~~--cP-------~~-~~gg~~~~~~~~~~~eiv~~vr~~~-- 156 (301)
T PRK07259 91 DTPIIANVAGS-TEEEYAEVAEKLSKAPNVDAIEL-NIS--CP-------NV-KHGGMAFGTDPELAYEVVKAVKEVV-- 156 (301)
T ss_pred CCcEEEEeccC-CHHHHHHHHHHHhccCCcCEEEE-ECC--CC-------CC-CCCccccccCHHHHHHHHHHHHHhc--
Confidence 68999988653 4578999999999999 999976 321 11 00 1222211111235678888999888
Q ss_pred CccEEEec--CCCCHHHHHHHH-HhCCCEEEE
Q 012517 394 KIPLIGCG--GISSGEDAYRKI-RAGATLVQL 422 (462)
Q Consensus 394 ~ipIIg~G--GI~s~~dA~e~i-~aGAd~Vqv 422 (462)
++||+.=- .+.+..+..+.+ ++|+|.+-+
T Consensus 157 ~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 157 KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 68888633 344444444444 689998865
No 438
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=89.57 E-value=15 Score=39.04 Aligned_cols=161 Identities=19% Similarity=0.141 Sum_probs=92.7
Q ss_pred eEEEEecCCC--CCHHHHHHHHHHHHHHccc-CcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCC
Q 012517 241 ILGVNIGKNK--TSEDAAADYVQGVHTLSQY-ADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGP 315 (462)
Q Consensus 241 ~lgvnig~nk--~t~~~~~dy~~~~~~l~~~-aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~ 315 (462)
|+..+|-|.| .+++ +|.+.+.++... .|+|-= |+..|-.. .-.+.+..+.+++.++.++. +.+
T Consensus 132 PL~gtiiKP~~Glsp~---~~a~~~y~~~~GGvD~iKDDE~l~~q~~~-----p~~~Rv~~~~~a~~~a~~eT----G~~ 199 (412)
T cd08213 132 PLLGTVPKPKVGLSPE---EHAEVAYEALVGGVDLVKDDENLTSQPFN-----RFEERAKESLKARDKAEAET----GER 199 (412)
T ss_pred CeEEeecCcccCCCHH---HHHHHHHHHHhcCCcccccCccCCCCCCC-----CHHHHHHHHHHHHHHHHHhh----CCc
Confidence 5666666653 4676 888888877763 787653 22221110 11245566666666655443 445
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
+-..+=|+-+ .+++.+-++.+.+.|++++.+. -. ..|++ +++.+++..+.. ++
T Consensus 200 ~~y~~NiT~~--~~em~~ra~~a~e~G~~~~mv~-~~---------------~~G~~-------~l~~l~~~~~~~--~l 252 (412)
T cd08213 200 KAYLANITAP--VREMERRAELVADLGGKYVMID-VV---------------VAGWS-------ALQYLRDLAEDY--GL 252 (412)
T ss_pred ceEEEEecCC--HHHHHHHHHHHHHhCCCeEEee-cc---------------ccChH-------HHHHHHHhcccc--Ce
Confidence 5566667755 3589999999999999887553 21 23443 233333332232 57
Q ss_pred cEEE----e--------cCCCCHHHHHHHH--HhCCCEEEEchhhh--hcCCChHHHHHHHHH
Q 012517 396 PLIG----C--------GGISSGEDAYRKI--RAGATLVQLYTAFA--YGGPALIPQIKAELA 442 (462)
Q Consensus 396 pIIg----~--------GGI~s~~dA~e~i--~aGAd~Vqv~Tali--~~GP~~i~~i~~~L~ 442 (462)
||.+ . =||.. . ++.++ .+|||.+.+.|..- ...++-+.++.+.+.
T Consensus 253 ~ihaHra~~ga~~r~~~~Gis~-~-~l~kl~RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~ 313 (412)
T cd08213 253 AIHAHRAMHAAFTRNPRHGISM-L-VLAKLYRLIGVDQLHIGTAVGKMEGDKEEVLRIADILR 313 (412)
T ss_pred EEEECCCcceecccCCcCcCcH-H-HHHHHHHHcCCCccccCCccCCcCCCHHHHHHHHHHHH
Confidence 7776 1 26665 3 55555 38999999998741 111234455555554
No 439
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=89.56 E-value=2.9 Score=42.22 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH-HH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG-ED 408 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~-~d 408 (462)
+.++..+-+.+.|+|.+-++..| ..|-|.|+| .+..+.+++|++.+ ++|++-=||=..+ ++
T Consensus 157 ~peea~~Fv~~TgvD~LAvaiGt--------------~HG~Y~~~p--~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~ 218 (286)
T PRK08610 157 DPKECQELVEKTGIDALAPALGS--------------VHGPYKGEP--KLGFKEMEEIGLST--GLPLVLHGGTGIPTKD 218 (286)
T ss_pred CHHHHHHHHHHHCCCEEEeeccc--------------cccccCCCC--CCCHHHHHHHHHHH--CCCEEEeCCCCCCHHH
Confidence 45566666788999999888655 234444544 35678899999998 7999999998777 67
Q ss_pred HHHHHHhCCCEEEEchhhh
Q 012517 409 AYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali 427 (462)
..+++..|..=|-++|.+.
T Consensus 219 ~~~ai~~GI~KiNi~T~l~ 237 (286)
T PRK08610 219 IQKAIPFGTAKINVNTENQ 237 (286)
T ss_pred HHHHHHCCCeEEEeccHHH
Confidence 7778999999999999984
No 440
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.53 E-value=3.9 Score=36.61 Aligned_cols=87 Identities=16% Similarity=0.097 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH----
Q 012517 331 LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG---- 406 (462)
Q Consensus 331 ~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~---- 406 (462)
.+++++++.+.++|.|.+|...... .+...+++.++++....+++|+..|.+.++
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~~---------------------~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~ 101 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGHG---------------------EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDF 101 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCccccC---------------------HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccCh
Confidence 3567788888899998887543110 123567778888874446777777777433
Q ss_pred H-HHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHH
Q 012517 407 E-DAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECL 445 (462)
Q Consensus 407 ~-dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l 445 (462)
+ +..++.+.|.+.| |.+-.-+.++...+++.+
T Consensus 102 ~~~~~~l~~~G~~~v-------f~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 102 EEVEKKFKEMGFDRV-------FPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred HHHHHHHHHcCCCEE-------ECcCCCHHHHHHHHHHHh
Confidence 3 3345556797766 422234555555555444
No 441
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=89.40 E-value=4.2 Score=41.06 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=44.5
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHH
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIR 414 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~ 414 (462)
++.+.++|+|.|.+-|-+... ..+.++.+++. .+++.|-++|||+ .+.+.++..
T Consensus 202 a~ea~~agaDiI~LDn~~~e~------------------------l~~av~~~~~~-~~~~~leaSGGI~-~~ni~~yA~ 255 (284)
T PRK06096 202 AIAALRAQPDVLQLDKFSPQQ------------------------ATEIAQIAPSL-APHCTLSLAGGIN-LNTLKNYAD 255 (284)
T ss_pred HHHHHHcCCCEEEECCCCHHH------------------------HHHHHHHhhcc-CCCeEEEEECCCC-HHHHHHHHh
Confidence 444567999999987754210 12233333222 2478999999996 999999999
Q ss_pred hCCCEEEEch
Q 012517 415 AGATLVQLYT 424 (462)
Q Consensus 415 aGAd~Vqv~T 424 (462)
+|+|.+.++.
T Consensus 256 tGvD~Is~ga 265 (284)
T PRK06096 256 CGIRLFITSA 265 (284)
T ss_pred cCCCEEEECc
Confidence 9999995554
No 442
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=89.36 E-value=11 Score=39.51 Aligned_cols=125 Identities=13% Similarity=0.048 Sum_probs=86.0
Q ss_pred HHHHHHHHH-cccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTL-SQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l-~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
++.+.++++ ...+..+-+.+..+ +.+.-.+.+++|+++. +.+..++|-....++.++..++++
T Consensus 163 ~~~~~a~~~~~~Gf~~~Kikvg~~---------~~~~di~~v~avRe~~-------G~~~~l~vDaN~~w~~~~A~~~~~ 226 (385)
T cd03326 163 RLRDEMRRYLDRGYTVVKIKIGGA---------PLDEDLRRIEAALDVL-------GDGARLAVDANGRFDLETAIAYAK 226 (385)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHHHHhc-------CCCCeEEEECCCCCCHHHHHHHHH
Confidence 455555444 34578888876421 1122245666666553 346788888777677788888999
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+.+.++..|- .|+.+...+..+++++.+ .+||.+-=.+.+..|+.+.++.|
T Consensus 227 ~l~~~~~~~iE--------------------------eP~~~~d~~~~~~L~~~~--~iPIa~gEs~~~~~~~~~li~~~ 278 (385)
T cd03326 227 ALAPYGLRWYE--------------------------EPGDPLDYALQAELADHY--DGPIATGENLFSLQDARNLLRYG 278 (385)
T ss_pred HhhCcCCCEEE--------------------------CCCCccCHHHHHHHHhhC--CCCEEcCCCcCCHHHHHHHHHhC
Confidence 88887766541 122233567778888888 69999888899999999999988
Q ss_pred C-----CEEEEchhh
Q 012517 417 A-----TLVQLYTAF 426 (462)
Q Consensus 417 A-----d~Vqv~Tal 426 (462)
| |.+|+--.-
T Consensus 279 a~~~~~div~~d~~~ 293 (385)
T cd03326 279 GMRPDRDVLQFDPGL 293 (385)
T ss_pred CccccCCEEEeCchh
Confidence 5 899887654
No 443
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.16 E-value=41 Score=37.43 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=55.5
Q ss_pred cCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecC
Q 012517 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGG 402 (462)
Q Consensus 323 spdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GG 402 (462)
+|-.+.+.+.++++.+.++|+|.|.+..|. |.+. .....++++.+++.+ .+||-.=.=
T Consensus 143 ~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~----------------G~~~----P~~v~~lv~~lk~~~--~~pi~~H~H 200 (582)
T TIGR01108 143 SPVHTLETYLDLAEELLEMGVDSICIKDMA----------------GILT----PKAAYELVSALKKRF--GLPVHLHSH 200 (582)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCC----------------CCcC----HHHHHHHHHHHHHhC--CCceEEEec
Confidence 444566788999999999999999888664 2211 123567888888887 366543222
Q ss_pred CCC---HHHHHHHHHhCCCEEEEchhh
Q 012517 403 ISS---GEDAYRKIRAGATLVQLYTAF 426 (462)
Q Consensus 403 I~s---~~dA~e~i~aGAd~Vqv~Tal 426 (462)
=+. -.-.++.+++||+.|+..-.=
T Consensus 201 nt~Gla~An~laAveaGa~~vd~ai~G 227 (582)
T TIGR01108 201 ATTGMAEMALLKAIEAGADGIDTAISS 227 (582)
T ss_pred CCCCcHHHHHHHHHHhCCCEEEecccc
Confidence 222 345667788999999876544
No 444
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=89.16 E-value=21 Score=35.65 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEec
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCG 401 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~G 401 (462)
++.+-+++++++|+++|++-.. ..+..+++.+.+ ++|+||.|
T Consensus 161 ~~i~~A~a~e~AGA~~ivlE~v----------------------------p~~~a~~It~~l--~iP~iGIG 202 (263)
T TIGR00222 161 KLLEDALALEEAGAQLLVLECV----------------------------PVELAAKITEAL--AIPVIGIG 202 (263)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC----------------------------cHHHHHHHHHhC--CCCEEeec
Confidence 6677788889999999986422 126778999999 79999876
No 445
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=89.07 E-value=3 Score=42.12 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH-HH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG-ED 408 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~-~d 408 (462)
+.++..+-+.+.|+|.+-++..| ..|.+.+.|. ++..+.+++|++.+ ++|++-=||=..+ ++
T Consensus 159 ~peea~~Fv~~TgvD~LAvaiGt--------------~HG~y~~~p~-~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~ 221 (288)
T TIGR00167 159 DPEEAKEFVKLTGVDSLAAAIGN--------------VHGVYKGEPK-GLDFERLEEIQKYV--NLPLVLHGGSGIPDEE 221 (288)
T ss_pred CHHHHHHHHhccCCcEEeeccCc--------------cccccCCCCC-ccCHHHHHHHHHHh--CCCEEEeCCCCCCHHH
Confidence 44566666788999999888655 2344544442 15778999999999 7999999998887 57
Q ss_pred HHHHHHhCCCEEEEchhhh
Q 012517 409 AYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali 427 (462)
..+++..|..=|-++|.+.
T Consensus 222 ~~~ai~~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 222 IKKAISLGVVKVNIDTELQ 240 (288)
T ss_pred HHHHHHcCCeEEEcChHHH
Confidence 7888999999999999984
No 446
>PRK14017 galactonate dehydratase; Provisional
Probab=89.05 E-value=19 Score=37.62 Aligned_cols=145 Identities=17% Similarity=0.066 Sum_probs=88.6
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHH-cccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTL-SQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l-~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
++..+++.. +++ ++++.++++ ...+..+-+-+.-+... .....+.+.-.+.++++++.. +.+..|+
T Consensus 115 ~~~~~~~~~--~~~---~~~~~a~~~~~~Gf~~~KiKv~~~~~~-~~~~~~~~~d~~~i~avr~~~-------g~~~~l~ 181 (382)
T PRK14017 115 RVYSWIGGD--RPA---DVAEAARARVERGFTAVKMNGTEELQY-IDSPRKVDAAVARVAAVREAV-------GPEIGIG 181 (382)
T ss_pred eEeEeCCCC--CHH---HHHHHHHHHHHcCCCEEEEcCcCCccc-cccHHHHHHHHHHHHHHHHHh-------CCCCeEE
Confidence 344445432 454 444444433 23477777766311100 000111233356666776654 3467788
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE
Q 012517 320 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG 399 (462)
Q Consensus 320 vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg 399 (462)
|--...++.++..++++.+.+.|+..|- . |+.+..++..+++++.+ .+||.+
T Consensus 182 vDaN~~w~~~~A~~~~~~l~~~~~~~iE-------e-------------------P~~~~d~~~~~~L~~~~--~~pIa~ 233 (382)
T PRK14017 182 VDFHGRVHKPMAKVLAKELEPYRPMFIE-------E-------------------PVLPENAEALPEIAAQT--SIPIAT 233 (382)
T ss_pred EECCCCCCHHHHHHHHHhhcccCCCeEE-------C-------------------CCCcCCHHHHHHHHhcC--CCCEEe
Confidence 8777768878888999988887766541 1 12222456677888887 689888
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEchhh
Q 012517 400 CGGISSGEDAYRKIRAG-ATLVQLYTAF 426 (462)
Q Consensus 400 ~GGI~s~~dA~e~i~aG-Ad~Vqv~Tal 426 (462)
.=-+.+.+|+.++++.| +|.+|+--..
T Consensus 234 dEs~~~~~~~~~li~~~a~d~v~~d~~~ 261 (382)
T PRK14017 234 GERLFSRWDFKRVLEAGGVDIIQPDLSH 261 (382)
T ss_pred CCccCCHHHHHHHHHcCCCCeEecCccc
Confidence 77888999999999877 8888876554
No 447
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=89.03 E-value=11 Score=38.81 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=82.9
Q ss_pred HHHHHHHHH-cccCcEEEEeccC-CCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHH
Q 012517 258 DYVQGVHTL-SQYADYLVINVSS-PNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA 335 (462)
Q Consensus 258 dy~~~~~~l-~~~aD~leiNvSs-Pnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia 335 (462)
++.+.++++ .+.+..+-+.+.. |+.. . .+.+.-.+.+++|++.. +.++.|++-....++.++..+++
T Consensus 123 ~~~~~a~~~~~~Gf~~~Kikvg~~~~~~-~---~~~~~d~~~v~avr~~~-------g~~~~l~vDan~~~~~~~A~~~~ 191 (341)
T cd03327 123 ELPDEAKEYLKEGYRGMKMRFGYGPSDG-H---AGLRKNVELVRAIREAV-------GYDVDLMLDCYMSWNLNYAIKMA 191 (341)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCcc-h---HHHHHHHHHHHHHHHHh-------CCCCcEEEECCCCCCHHHHHHHH
Confidence 454444443 3457888887642 2211 0 11233356677776654 34677888777667778888999
Q ss_pred HHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHh
Q 012517 336 AVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRA 415 (462)
Q Consensus 336 ~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~a 415 (462)
+.+.+.++..|- .|+.+...+..+++++.+ .+||.+.=-+.+..|+.+.++.
T Consensus 192 ~~l~~~~~~~iE--------------------------eP~~~~d~~~~~~l~~~~--~~pIa~gE~~~~~~~~~~~i~~ 243 (341)
T cd03327 192 RALEKYELRWIE--------------------------EPLIPDDIEGYAELKKAT--GIPISTGEHEYTVYGFKRLLEG 243 (341)
T ss_pred HHhhhcCCcccc--------------------------CCCCccCHHHHHHHHhcC--CCCeEeccCccCHHHHHHHHHc
Confidence 999887655331 112223456677888887 6888876678888999999987
Q ss_pred C-CCEEEEchhh
Q 012517 416 G-ATLVQLYTAF 426 (462)
Q Consensus 416 G-Ad~Vqv~Tal 426 (462)
| +|.+|+--..
T Consensus 244 ~a~d~i~~d~~~ 255 (341)
T cd03327 244 RAVDILQPDVNW 255 (341)
T ss_pred CCCCEEecCccc
Confidence 6 7888875444
No 448
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=88.99 E-value=20 Score=36.04 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcc--cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHH
Q 012517 257 ADYVQGVHTLSQ--YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDI 334 (462)
Q Consensus 257 ~dy~~~~~~l~~--~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~i 334 (462)
+.+.+.++.+.+ .+|.|.++-+. |.-..-..+.-.++++.+.+.. ..++||++=+... +.++..++
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~Gst----GE~~~Ls~eEr~~~~~~~~~~~-------~~~~~viagvg~~-~t~~ai~~ 91 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGST----GEAFLLSTEEKKQVLEIVAEEA-------KGKVKLIAQVGSV-NTAEAQEL 91 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc----cccccCCHHHHHHHHHHHHHHh-------CCCCCEEecCCCC-CHHHHHHH
Confidence 355566666654 58999988653 2222223355566777776665 2468999988653 34588899
Q ss_pred HHHHHHcCCcEEEEecCCccC
Q 012517 335 AAVAVALRLDGLIISNTTISR 355 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r 355 (462)
++.+.+.|+|++.+....+..
T Consensus 92 a~~a~~~Gad~v~v~~P~y~~ 112 (293)
T PRK04147 92 AKYATELGYDAISAVTPFYYP 112 (293)
T ss_pred HHHHHHcCCCEEEEeCCcCCC
Confidence 999999999999998765433
No 449
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=88.94 E-value=18 Score=37.84 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhh
Q 012517 251 TSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKED 330 (462)
Q Consensus 251 ~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~ 330 (462)
.|++ ++.+.-+.++ +|.+..==-|+..+.-+. ...+.+..-+++.++..+... ....+..++-=|-..... +
T Consensus 124 ltpe---~~~~~q~~ig--~DI~~~LD~~~~~~~~~~-~~~~sv~rT~rw~~~~~~~~~-~~~~~~~lfgiVQGg~~~-d 195 (366)
T PRK00112 124 LTPE---KSMEIQYDLG--SDIVMAFDECPPYPATYD-YAKKSMERTLRWAERSRDAHD-RLENDQALFGIVQGGVYE-D 195 (366)
T ss_pred eCHH---HHHHHHHHhC--CCEEEECCcCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhh-cCCCcceEEEEeeCCccH-H
Confidence 3566 7777777777 787654212222111011 111233333344433332111 000012233333333333 4
Q ss_pred H-HHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 331 L-EDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 331 ~-~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+ .+-++.+.+.+++|+.+. |++...-.+...++|..+...++.+.|....| |.+|+|+
T Consensus 196 LR~~sa~~l~~~~~~G~aIG--------------------Gl~~ge~~~~~~~~v~~~~~~lp~~kPryl~G-vg~P~~i 254 (366)
T PRK00112 196 LRRESAKGLVEIDFDGYAIG--------------------GLSVGEPKEEMYRILEHTAPLLPEDKPRYLMG-VGTPEDL 254 (366)
T ss_pred HHHHHHHHHHhCCCceeEec--------------------cccCCCCHHHHHHHHHHHHhhCCCcCCeEecC-CCCHHHH
Confidence 4 455666777888887654 43321123344567888888899899988766 9999999
Q ss_pred HHHHHhCCCEEEEc
Q 012517 410 YRKIRAGATLVQLY 423 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~ 423 (462)
...+..|+|++-..
T Consensus 255 ~~~v~~GvD~FD~~ 268 (366)
T PRK00112 255 VEGVARGVDMFDCV 268 (366)
T ss_pred HHHHHcCCCEEeeC
Confidence 99999999987543
No 450
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.88 E-value=5.4 Score=39.17 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCC----
Q 012517 251 TSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDL---- 326 (462)
Q Consensus 251 ~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl---- 326 (462)
.+....+||.+ .+++|.|++-+-..| ..+..++.+++.++-.++. ++++ ++.=
T Consensus 9 l~~~~~~d~Le---~~g~yID~lKfg~Gt------~~l~~~~~l~eki~la~~~----------~V~v----~~GGtl~E 65 (237)
T TIGR03849 9 LPPKFVEDYLK---VCGDYITFVKFGWGT------SALIDRDIVKEKIEMYKDY----------GIKV----YPGGTLFE 65 (237)
T ss_pred CCHHHHHHHHH---HhhhheeeEEecCce------EeeccHHHHHHHHHHHHHc----------CCeE----eCCccHHH
Confidence 35565566655 467788999887644 3355556677766655432 4443 4431
Q ss_pred ---ChhhHHHHHHHHHHcCCcEEEEecCCccCC
Q 012517 327 ---SKEDLEDIAAVAVALRLDGLIISNTTISRP 356 (462)
Q Consensus 327 ---~~~~~~~ia~~~~~~GvdgIivsNTt~~r~ 356 (462)
....+.+..+.|.+.|+|.|-+++.++..+
T Consensus 66 ~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~ 98 (237)
T TIGR03849 66 IAHSKGKFDEYLNECDELGFEAVEISDGSMEIS 98 (237)
T ss_pred HHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCC
Confidence 124677888899999999999999987654
No 451
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=88.73 E-value=20 Score=37.03 Aligned_cols=122 Identities=17% Similarity=0.085 Sum_probs=74.2
Q ss_pred ccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEE
Q 012517 268 QYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLI 347 (462)
Q Consensus 268 ~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIi 347 (462)
..+..+-+-+..+... ...-.+.+.-.+.+++|++.. +.++.|+|--.-.++.++..++++.+.+.+++.|-
T Consensus 137 ~Gf~~~KiKvg~~~~~-~~~~~~~~~D~~~i~avr~~~-------g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE 208 (352)
T cd03325 137 AGFTAVKMNATEELQW-IDTSKKVDAAVERVAALREAV-------GPDIDIGVDFHGRVSKPMAKDLAKELEPYRLLFIE 208 (352)
T ss_pred cCCCEEEecCCCCccc-CCCHHHHHHHHHHHHHHHHhh-------CCCCEEEEECCCCCCHHHHHHHHHhccccCCcEEE
Confidence 3578888888653211 000011233356666666653 34677888777667777888888888887776652
Q ss_pred EecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC-CCEEEEchh
Q 012517 348 ISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTA 425 (462)
Q Consensus 348 vsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Ta 425 (462)
. |+.+...+..+++++.+ .+||.+.=-+.+.+|....++.| +|.||+--.
T Consensus 209 -------e-------------------P~~~~d~~~~~~L~~~~--~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~ 259 (352)
T cd03325 209 -------E-------------------PVLPENVEALAEIAART--TIPIATGERLFSRWDFKELLEDGAVDIIQPDIS 259 (352)
T ss_pred -------C-------------------CCCccCHHHHHHHHHhC--CCCEEecccccCHHHHHHHHHhCCCCEEecCcc
Confidence 1 11122345556677766 57766655667777777777765 677776543
No 452
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=88.65 E-value=7.5 Score=37.30 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCC
Q 012517 291 RKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGG 370 (462)
Q Consensus 291 ~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GG 370 (462)
.+.+.++++.+++.. +.|+.+.+--+...+...++++.+.+.|+|+|++....
T Consensus 38 ~~~~~~~~~~i~~~~---------~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~------------------ 90 (236)
T cd04730 38 PEALRAEIRKIRALT---------DKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGP------------------ 90 (236)
T ss_pred HHHHHHHHHHHHHhc---------CCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCCC------------------
Confidence 345556666665431 34665555433211256788899999999999875320
Q ss_pred CCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 012517 371 LSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 371 lSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~T 424 (462)
..+.++++++. .++++. .+.+.+++.+..++|||.+.+..
T Consensus 91 ---------~~~~~~~~~~~---~i~~i~--~v~~~~~~~~~~~~gad~i~~~~ 130 (236)
T cd04730 91 ---------PAEVVERLKAA---GIKVIP--TVTSVEEARKAEAAGADALVAQG 130 (236)
T ss_pred ---------CHHHHHHHHHc---CCEEEE--eCCCHHHHHHHHHcCCCEEEEeC
Confidence 12344555542 466655 47888999998899999987743
No 453
>PLN02540 methylenetetrahydrofolate reductase
Probab=88.52 E-value=27 Score=38.66 Aligned_cols=160 Identities=11% Similarity=0.149 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHHccc-CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecC-CCChh
Q 012517 252 SEDAAADYVQGVHTLSQY-ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAP-DLSKE 329 (462)
Q Consensus 252 t~~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKisp-dl~~~ 329 (462)
|.+..+.+.+.++++..+ .+++.|..+. |.+ .++.-.++...+++. ..++.+.=++. |.+.+
T Consensus 10 t~~g~~nL~~~~~rl~~~~P~FisVT~gA----gGs---t~~~Tl~la~~lq~~---------~Gie~i~HLTCrd~n~~ 73 (565)
T PLN02540 10 TEEGVDNLFERMDRMVAHGPLFCDITWGA----GGS---TADLTLDIANRMQNM---------ICVETMMHLTCTNMPVE 73 (565)
T ss_pred CchHHHHHHHHHHHHhccCCCEEEeCCCC----CCC---cHHHHHHHHHHHHHh---------cCCCeeEEeeecCCCHH
Confidence 344456777778888765 7888876643 221 123334455555443 25788888875 56777
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCC-----C
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGI-----S 404 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI-----~ 404 (462)
++.+....+.+.|+.-|.+--.-..+... ......|+ +..+.++|+.+++..+ +.-=|++.|- .
T Consensus 74 ~L~~~L~~a~~~GIrNILALrGDpp~~~d----~~~~~~g~------F~~A~dLV~~Ir~~~g-d~f~IgVAGYPEgHpe 142 (565)
T PLN02540 74 KIDHALETIKSNGIQNILALRGDPPHGQD----KFVQVEGG------FACALDLVKHIRSKYG-DYFGITVAGYPEAHPD 142 (565)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCC----CcCCCCCC------cccHHHHHHHHHHhCC-CCceEEEeCCCCCCCc
Confidence 89999999999999988665332111100 00001233 3468999999998753 2122333322 1
Q ss_pred ---------------CHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 405 ---------------SGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 405 ---------------s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
+-+-..+++++||+. +-|-++| +.+.+.++.+.+
T Consensus 143 ~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdF--iITQlfF-D~d~f~~f~~~~ 191 (565)
T PLN02540 143 VIGGDGLATPEAYQKDLAYLKEKVDAGADL--IITQLFY-DTDIFLKFVNDC 191 (565)
T ss_pred ccccccccCCCChHHHHHHHHHHHHcCCCE--Eeecccc-CHHHHHHHHHHH
Confidence 234455788899995 5688877 466555555443
No 454
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=88.50 E-value=4.3 Score=40.28 Aligned_cols=74 Identities=23% Similarity=0.184 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+..++|....+.|+++|.|- |-.. ..|| +++.+..+++.+ ++||.---=|-++.++
T Consensus 69 d~~~~a~~y~~~GA~aiSVl-Te~~------------~F~G---------s~~dL~~v~~~~--~~PvL~KDFIid~~QI 124 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVL-TEPK------------FFGG---------SLEDLRAVRKAV--DLPVLRKDFIIDPYQI 124 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE---SC------------CCHH---------HHHHHHHHHHHS--SS-EEEES---SHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEE-CCCC------------CCCC---------CHHHHHHHHHHh--CCCcccccCCCCHHHH
Confidence 78899999999999999764 3100 1233 789999999999 7999999999999999
Q ss_pred HHHHHhCCCEEEEchhhh
Q 012517 410 YRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~Tali 427 (462)
++...+|||+|-+-.+++
T Consensus 125 ~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 125 YEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHTT-SEEEEEGGGS
T ss_pred HHHHHcCCCEeehhHHhC
Confidence 999999999999988886
No 455
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=88.49 E-value=13 Score=38.93 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHHcccCcEEEE-eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhh
Q 012517 252 SEDAAADYVQGVHTLSQYADYLVI-NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKED 330 (462)
Q Consensus 252 t~~~~~dy~~~~~~l~~~aD~lei-NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~ 330 (462)
|+| ++++..+.++ +|.+.. ....|...... ...+.+..-+++.++..+... ...+..++-=+-.... .+
T Consensus 121 tpe---~~i~~q~~ig--~DI~m~LD~~~~~~~~~~--~~~~av~rT~rw~~r~~~~~~--~~~~~~lfgiVqGg~~-~d 190 (367)
T TIGR00449 121 TPE---KIMEIQYALG--SDIIMALDECTPPPADYD--YAEESLERTLRWAEESLEYHK--RRNENALFGIVQGGTY-PD 190 (367)
T ss_pred CHH---HHHHHHHHHC--CCEEEECCcCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHh--ccCCceEEEEecCCCC-HH
Confidence 566 7888888888 786554 32222211110 111334444444444332110 0112233333333333 35
Q ss_pred HHHH-HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHH
Q 012517 331 LEDI-AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDA 409 (462)
Q Consensus 331 ~~~i-a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA 409 (462)
+.+. ++.+.+.+.||+.+.+-.. |.+ .+...++|..+...++.+.|.... ||.+++|+
T Consensus 191 LR~~sa~~l~~~~~~GyaIGGl~~-------------------ge~-~~~~~~~l~~~~~~lP~~kPryl~-Gvg~P~~i 249 (367)
T TIGR00449 191 LRRQSAEGLAELDFDGYAIGGVSV-------------------GEP-KRDMLRILEHVAPLLPKDKPRYLM-GVGTPELL 249 (367)
T ss_pred HHHHHHHHHhhCCCCeEEEeCccc-------------------CCC-HHHHHHHHHHHHhhCCcccceEec-CCCCHHHH
Confidence 5544 7777788899987654211 111 234567888888888888887765 48899999
Q ss_pred HHHHHhCCCEEEEch
Q 012517 410 YRKIRAGATLVQLYT 424 (462)
Q Consensus 410 ~e~i~aGAd~Vqv~T 424 (462)
...+..|+|++-...
T Consensus 250 ~~~v~~GvD~FD~~~ 264 (367)
T TIGR00449 250 ANAVSLGIDMFDCVA 264 (367)
T ss_pred HHHHHcCCCEEeeCC
Confidence 999999999875433
No 456
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=88.39 E-value=14 Score=35.46 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCC
Q 012517 294 LKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSG 373 (462)
Q Consensus 294 l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG 373 (462)
..+.++.+.+.. +-||.+=+.. .+.+++.+.++.+.+.+ ..+++ .-|
T Consensus 39 ~~~~~~~i~~~~---------~~~v~~qv~~-~~~e~~i~~a~~l~~~~-~~~~i-----KIP----------------- 85 (211)
T cd00956 39 FEAVLKEICEII---------DGPVSAQVVS-TDAEGMVAEARKLASLG-GNVVV-----KIP----------------- 85 (211)
T ss_pred HHHHHHHHHHhc---------CCCEEEEEEe-CCHHHHHHHHHHHHHhC-CCEEE-----EEc-----------------
Confidence 445555555442 3467665543 34567778888877763 11211 111
Q ss_pred CcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhc-CCChHHHHHHHHHHHHHHcC---
Q 012517 374 KPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYG-GPALIPQIKAELAECLERDG--- 449 (462)
Q Consensus 374 ~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~-GP~~i~~i~~~L~~~l~~~G--- 449 (462)
.....++.++++.+. +++ +..+.|.|.++|...+++||+.|..|-+=+-. |-+ .-.+.+++.++.+++|
T Consensus 86 --~T~~gl~ai~~L~~~---gi~-v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~d-g~~~i~~i~~~~~~~~~~t 158 (211)
T cd00956 86 --VTEDGLKAIKKLSEE---GIK-TNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGGD-GMELIREIRTIFDNYGFDT 158 (211)
T ss_pred --CcHhHHHHHHHHHHc---CCc-eeeEEecCHHHHHHHHHcCCCEEEEecChHhhcCCC-HHHHHHHHHHHHHHcCCCc
Confidence 001135677777665 354 77888999999999999999999988876531 111 2233444555555554
Q ss_pred ------CCCHHHhh
Q 012517 450 ------FKSIIEAV 457 (462)
Q Consensus 450 ------~~si~e~~ 457 (462)
+++..|+.
T Consensus 159 kil~As~r~~~ei~ 172 (211)
T cd00956 159 KILAASIRNPQHVI 172 (211)
T ss_pred eEEecccCCHHHHH
Confidence 45666654
No 457
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=88.29 E-value=11 Score=39.67 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCC
Q 012517 295 KDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGK 374 (462)
Q Consensus 295 ~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~ 374 (462)
.+.+++|+++. +.+..|++-..-.++.++..++++.+.+.++..|- .
T Consensus 193 ~~~v~avre~~-------G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------e------------------- 239 (404)
T PRK15072 193 PKLFEAVRNKF-------GFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLE-------D------------------- 239 (404)
T ss_pred HHHHHHHHhhh-------CCCceEEEECCCCCCHHHHHHHHHhccccCCcEEE-------C-------------------
Confidence 45666666654 34677887777668878888888888887765542 0
Q ss_pred cCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC-CCEEEEchhh
Q 012517 375 PLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAF 426 (462)
Q Consensus 375 ~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tal 426 (462)
|+.+-.++..+++++.+ .+||++.=-+.+..|+.+.++.| +|.||+--.-
T Consensus 240 P~~~~d~~~~~~L~~~~--~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~ 290 (404)
T PRK15072 240 PTPAENQEAFRLIRQHT--TTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTH 290 (404)
T ss_pred CCCccCHHHHHHHHhcC--CCCEEeCcCccCHHHHHHHHHcCCCCEEecCccc
Confidence 11222355667777777 58877777777888888888876 6888765444
No 458
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=88.28 E-value=27 Score=34.67 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecC
Q 012517 329 EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGG 402 (462)
Q Consensus 329 ~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GG 402 (462)
+++.+-+++++++|+|+|.+-.. ..+.++++.+.+ ++|+||.|.
T Consensus 158 ~~~i~ra~a~~~AGA~~i~lE~v----------------------------~~~~~~~i~~~v--~iP~igiGa 201 (254)
T cd06557 158 ERLLEDALALEEAGAFALVLECV----------------------------PAELAKEITEAL--SIPTIGIGA 201 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCC----------------------------CHHHHHHHHHhC--CCCEEEecc
Confidence 46677788889999999986321 125778999999 699998873
No 459
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=88.26 E-value=31 Score=34.93 Aligned_cols=144 Identities=22% Similarity=0.199 Sum_probs=84.2
Q ss_pred CHHH-HHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCC---
Q 012517 252 SEDA-AADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDL--- 326 (462)
Q Consensus 252 t~~~-~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl--- 326 (462)
+.++ .+-|...++.+.+ .+|.|.+.- +.+.+.+..+++++++.. ..+|+++-++.+-
T Consensus 134 ~~~~~~~~~~~q~~~l~~~gvD~i~~ET----------~~~~~E~~~~~~~~~~~~--------~~~pv~is~~~~~~g~ 195 (304)
T PRK09485 134 SEEELQDFHRPRIEALAEAGADLLACET----------IPNLDEAEALVELLKEEF--------PGVPAWLSFTLRDGTH 195 (304)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEec----------cCCHHHHHHHHHHHHHhc--------CCCcEEEEEEeCCCCc
Confidence 3444 3466667777744 599988752 112244556666665331 2689999887642
Q ss_pred --ChhhHHHHHHHHHHcC-CcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEE--Eec
Q 012517 327 --SKEDLEDIAAVAVALR-LDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLI--GCG 401 (462)
Q Consensus 327 --~~~~~~~ia~~~~~~G-vdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipII--g~G 401 (462)
+-+.+.+.++.+.+.+ +++ +-.|.+ + + ......++++.+.+ +.|++ .++
T Consensus 196 l~~G~~~~~~~~~l~~~~~~~~-iGiNC~-~-p---------------------~~~~~~l~~~~~~~--~~pl~~~PNa 249 (304)
T PRK09485 196 ISDGTPLAEAAALLAASPQVVA-VGVNCT-A-P---------------------ELVTAAIAALRAVT--DKPLVVYPNS 249 (304)
T ss_pred CCCCCCHHHHHHHHhcCCCceE-EEecCC-C-H---------------------HHHHHHHHHHHhcc--CCcEEEECCC
Confidence 1235777888776654 555 345765 1 1 11345555555544 23444 333
Q ss_pred CCC------------CH----HHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHH
Q 012517 402 GIS------------SG----EDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 442 (462)
Q Consensus 402 GI~------------s~----~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~ 442 (462)
|.. ++ +.+.+.++.|+++|.=|=+. +|.-++.|.+.++
T Consensus 250 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt---tP~hI~al~~~l~ 303 (304)
T PRK09485 250 GEVYDAVTKTWHGPADDASLGELAPEWYAAGARLIGGCCRT---TPEDIAALAAALK 303 (304)
T ss_pred CCCCCCCCCcccCCCChHHHHHHHHHHHHcCCeEEeeCCCC---CHHHHHHHHHHhh
Confidence 311 11 45566678899988888776 6888888877653
No 460
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=88.26 E-value=4.9 Score=41.99 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=63.7
Q ss_pred CCEEE-EecCC--CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC
Q 012517 316 PPLLV-KIAPD--LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR 392 (462)
Q Consensus 316 ~Pv~v-Kispd--l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~ 392 (462)
.|++. =+-|+ ++.+++.++++.+.+.|+|+|..-.++..-+ . ++-..-.....+.+++..+.++
T Consensus 130 rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~-------~------~~~eER~~~v~~av~~a~~~TG 196 (367)
T cd08205 130 RPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP-------Y------APFEERVRACMEAVRRANEETG 196 (367)
T ss_pred CCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc-------c------CCHHHHHHHHHHHHHHHHHhhC
Confidence 34443 34555 6778999999999999999997543331111 0 0000001123345555555555
Q ss_pred CCccEEEecCCCCHHHHHH----HHHhCCCEEEEchhhhhcCCChHHHHHHH
Q 012517 393 GKIPLIGCGGISSGEDAYR----KIRAGATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 393 ~~ipIIg~GGI~s~~dA~e----~i~aGAd~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
+..+++++.. .+.+++++ ..++||+.|++...+ | |+.....+.++
T Consensus 197 ~~~~y~~nit-~~~~e~i~~a~~a~~~Gad~vmv~~~~-~-g~~~~~~l~~~ 245 (367)
T cd08205 197 RKTLYAPNIT-GDPDELRRRADRAVEAGANALLINPNL-V-GLDALRALAED 245 (367)
T ss_pred CcceEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEeccc-c-cccHHHHHHhc
Confidence 4444444443 44466654 346899999999886 3 67767676653
No 461
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=88.16 E-value=1.7 Score=45.59 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHH
Q 012517 332 EDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYR 411 (462)
Q Consensus 332 ~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e 411 (462)
..-.+.+.++|+|.|++--. -|.| ..-+++++.+++..+ ++.||+ |.|-+.++|.+
T Consensus 253 K~rl~ll~~aGvdvviLDSS-----------------qGnS-----~~qiemik~iK~~yP-~l~Via-GNVVT~~qa~n 308 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSS-----------------QGNS-----IYQLEMIKYIKETYP-DLQIIA-GNVVTKEQAAN 308 (503)
T ss_pred hHHHHHhhhcCCcEEEEecC-----------------CCcc-----hhHHHHHHHHHhhCC-Cceeec-cceeeHHHHHH
Confidence 45567778899999987422 1222 124688999999987 788887 56778999999
Q ss_pred HHHhCCCEEEEch
Q 012517 412 KIRAGATLVQLYT 424 (462)
Q Consensus 412 ~i~aGAd~Vqv~T 424 (462)
.|.+|||.+-++-
T Consensus 309 LI~aGaDgLrVGM 321 (503)
T KOG2550|consen 309 LIAAGADGLRVGM 321 (503)
T ss_pred HHHccCceeEecc
Confidence 9999999977653
No 462
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=88.14 E-value=4 Score=41.23 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCH-HH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG-ED 408 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~-~d 408 (462)
+.++..+-+.+.|+|.+-++..| ..|-|.|+| .+..+.+++|++.+ ++|++-=||=..+ ++
T Consensus 156 ~peea~~Fv~~TgvD~LAvaiGt--------------~HG~y~~~p--~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~ 217 (284)
T PRK09195 156 DPAQAREFVEATGIDSLAVAIGT--------------AHGMYKGEP--KLDFDRLENIRQWV--NIPLVLHGASGLPTKD 217 (284)
T ss_pred CHHHHHHHHHHHCcCEEeeccCc--------------cccccCCCC--cCCHHHHHHHHHHh--CCCeEEecCCCCCHHH
Confidence 45566666778999999888665 234555554 35778999999998 6888877765544 56
Q ss_pred HHHHHHhCCCEEEEchhhhh
Q 012517 409 AYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali~ 428 (462)
..+++..|..=|-++|.+..
T Consensus 218 ~~~ai~~Gi~KiNi~T~l~~ 237 (284)
T PRK09195 218 IQQTIKLGICKVNVATELKI 237 (284)
T ss_pred HHHHHHcCCeEEEeCcHHHH
Confidence 77788999999999999853
No 463
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=88.12 E-value=2.5 Score=37.70 Aligned_cols=68 Identities=25% Similarity=0.269 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHH
Q 012517 331 LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAY 410 (462)
Q Consensus 331 ~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~ 410 (462)
.+++++++.+.++|.|.+|...... .+...++++++++.-..+++|+ +||..-.+|..
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~~---------------------~~~~~~~~~~L~~~g~~~i~vi-vGG~~~~~~~~ 99 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGGH---------------------LTLVPALRKELDKLGRPDILVV-VGGVIPPQDFD 99 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhhh---------------------HHHHHHHHHHHHhcCCCCCEEE-EeCCCChHhHH
Confidence 4578888899999999988643111 1123455666666533345544 57766778899
Q ss_pred HHHHhCCCEE
Q 012517 411 RKIRAGATLV 420 (462)
Q Consensus 411 e~i~aGAd~V 420 (462)
++.++|.+.+
T Consensus 100 ~l~~~Gvd~~ 109 (132)
T TIGR00640 100 ELKEMGVAEI 109 (132)
T ss_pred HHHHCCCCEE
Confidence 9999997654
No 464
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=88.10 E-value=2.9 Score=49.19 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=93.8
Q ss_pred cccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCccc
Q 012517 287 MLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAK 366 (462)
Q Consensus 287 ~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~ 366 (462)
+...-+.|..|+-.++.+ ..+--|.||+-... -+--+|.-+.+..+|-|.++...-+- +.-++ ...
T Consensus 1078 DIYSIEDLaQLIyDLk~a--------NP~ArVSVKLVSEa---GVGiVASGVaK~~ADhI~vSGhDGGT-GAS~w--t~I 1143 (2142)
T KOG0399|consen 1078 DIYSIEDLAQLIYDLKCA--------NPRARVSVKLVSEA---GVGIVASGVAKGNADHILVSGHDGGT-GASRW--TGI 1143 (2142)
T ss_pred ccccHHHHHHHHHHhhcc--------CCCceeEEEEEecc---cceeeeeccccccCceEEEeccCCCc-Ccccc--ccc
Confidence 344446677777777655 24567888885432 23344555566678888777543211 00000 001
Q ss_pred ccCCCCCCcCccchHHHH--HHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhh-----------------
Q 012517 367 ETGGLSGKPLLSLSNNIL--KEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA----------------- 427 (462)
Q Consensus 367 ~~GGlSG~~l~~~al~~v--~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali----------------- 427 (462)
...|+ |+ +.-+.-. -.+..-+.+++.|=.-|++.|+.|+.-+-..||+=-.++|+-+
T Consensus 1144 K~AGl--PW--ELGlAEThQtLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCp 1219 (2142)
T KOG0399|consen 1144 KHAGL--PW--ELGLAETHQTLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCP 1219 (2142)
T ss_pred ccCCC--Ch--hhcchhhhhHHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCC
Confidence 11121 11 1111000 0122233456788899999999999999999999888877643
Q ss_pred ----hcCCC--------------hHHHHHHHHHHHHHHcCCCCHHHhhccc
Q 012517 428 ----YGGPA--------------LIPQIKAELAECLERDGFKSIIEAVGAD 460 (462)
Q Consensus 428 ----~~GP~--------------~i~~i~~~L~~~l~~~G~~si~e~~G~~ 460 (462)
.++|. ++--+.++++..|.+.||++++|++|..
T Consensus 1220 VGiAtQdp~LRakF~G~PehvVNff~yvaEEvR~imakLGfrtldemvGrt 1270 (2142)
T KOG0399|consen 1220 VGIATQDPELRAKFPGQPEHVVNFFFYVAEEVRGIMAKLGFRTLDEMVGRT 1270 (2142)
T ss_pred cccccCCHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHhCcchHHHHhcch
Confidence 12332 3445688999999999999999999964
No 465
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.09 E-value=2.7 Score=43.80 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=57.1
Q ss_pred CChhhHHHH-------HHHHHHcCCcEEEEecCCccCCCC-CC--CCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 326 LSKEDLEDI-------AAVAVALRLDGLIISNTTISRPDP-VS--KNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 326 l~~~~~~~i-------a~~~~~~GvdgIivsNTt~~r~~~-~~--~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
++.+|+.++ |+.+.++|+|||-++-.--..... +. .+.-..++|| |=..-....+++|+.+++.++.++
T Consensus 134 mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGG-slenR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 134 MTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGG-SLAARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHcCCCC
Confidence 666665544 445678999999776321000000 00 0011235565 211222346799999999997677
Q ss_pred cEEE--e---------cCCCCHHHHHHH---H-HhCCCEEEEchhh
Q 012517 396 PLIG--C---------GGISSGEDAYRK---I-RAGATLVQLYTAF 426 (462)
Q Consensus 396 pIIg--~---------GGI~s~~dA~e~---i-~aGAd~Vqv~Tal 426 (462)
||.. + +|-.+.+|+.+. + ++|.|++.+.++-
T Consensus 213 ~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~ 258 (361)
T cd04747 213 PIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRR 258 (361)
T ss_pred eEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 6653 1 122567777666 3 5799999997763
No 466
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=88.05 E-value=31 Score=36.70 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=60.4
Q ss_pred eEEEEecCC--CCCHHHHHHHHHHHHHHccc-CcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCC
Q 012517 241 ILGVNIGKN--KTSEDAAADYVQGVHTLSQY-ADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGP 315 (462)
Q Consensus 241 ~lgvnig~n--k~t~~~~~dy~~~~~~l~~~-aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~ 315 (462)
|+..++-|. ..+++ +|.+.+..+... .|+|-= |+.+|... .-.+.+..+.+++.++.++. +.+
T Consensus 135 PL~~tiiKP~~GLsp~---~~a~~~y~~~~GGvD~IKDDE~l~~q~~~-----p~~eRv~~~~~a~~~a~~eT----G~~ 202 (407)
T PRK09549 135 PLLMSIFKGVIGRDLD---YLKEQLRDQALGGVDLVKDDEILFENALT-----PFEKRIVAGKEVLQEVYETT----GHK 202 (407)
T ss_pred ceEEEeecCccCCCHH---HHHHHHHHHHhcCCcceecCcCCCCCCCc-----CHHHHHHHHHHHHHHHHHhh----CCc
Confidence 555566663 35677 888888887763 787754 33222111 11255666666666665544 445
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEe
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIIS 349 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivs 349 (462)
+-..+=|+-+. +++.+-++.+.+.|+.++.+.
T Consensus 203 ~~y~~NiT~~~--~em~~ra~~a~~~G~~~~m~~ 234 (407)
T PRK09549 203 TLYAVNLTGRT--FELKEKAKRAAEAGADALLFN 234 (407)
T ss_pred ceEEEecCCCH--HHHHHHHHHHHHcCCCeEEEe
Confidence 55666777553 478899999999999887654
No 467
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=88.01 E-value=26 Score=38.02 Aligned_cols=146 Identities=18% Similarity=0.088 Sum_probs=83.3
Q ss_pred eEEEEecCC--CCCHHHHHHHHHHHHHHcc-cCcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCC
Q 012517 241 ILGVNIGKN--KTSEDAAADYVQGVHTLSQ-YADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGP 315 (462)
Q Consensus 241 ~lgvnig~n--k~t~~~~~dy~~~~~~l~~-~aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~ 315 (462)
||..+|-|. ..+++ +|++.+..+.. ..|+|-= |+.+|-.. .-.+.+..+.++++++.++. +.+
T Consensus 168 PLigtiiKP~~GLsp~---~~A~~~y~~~~GGvD~IKDDE~l~dq~~~-----p~~eRv~~~~~a~~~a~~eT----G~~ 235 (475)
T CHL00040 168 PLLGCTIKPKLGLSAK---NYGRAVYECLRGGLDFTKDDENVNSQPFM-----RWRDRFLFCAEAIYKAQAET----GEI 235 (475)
T ss_pred ceEEEecccccCCCHH---HHHHHHHHHHcCCCcccccCccCCCCCCC-----CHHHHHHHHHHHHHHHHHhh----CCc
Confidence 566666665 34677 78887777765 3787753 22222111 11255666666766665543 332
Q ss_pred CCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 316 PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 316 ~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
+-..+=|+.+ +.+++.+-++.+.+.|+.++.+. -. ..|++ +++.+++.++.. ++
T Consensus 236 ~~y~~NiTa~-~~~em~~ra~~a~e~G~~~~mv~-~~---------------~~G~~-------al~~l~~~~~~~--~l 289 (475)
T CHL00040 236 KGHYLNATAG-TCEEMYKRAVFARELGVPIVMHD-YL---------------TGGFT-------ANTSLAHYCRDN--GL 289 (475)
T ss_pred ceeeeccCCC-CHHHHHHHHHHHHHcCCceEEEe-cc---------------ccccc-------hHHHHHHHhhhc--Cc
Confidence 2224444421 12488899999999999987543 21 23444 244444433333 46
Q ss_pred cEEE----ec--------CCCCHHHHHHHH--HhCCCEEEEchhh
Q 012517 396 PLIG----CG--------GISSGEDAYRKI--RAGATLVQLYTAF 426 (462)
Q Consensus 396 pIIg----~G--------GI~s~~dA~e~i--~aGAd~Vqv~Tal 426 (462)
||.+ .| ||.. -++.+| .+|||.+.++|.+
T Consensus 290 ~IhaHrA~~ga~~r~~~~Gis~--~vl~KL~RLaGaD~ih~~t~~ 332 (475)
T CHL00040 290 LLHIHRAMHAVIDRQKNHGIHF--RVLAKALRMSGGDHIHAGTVV 332 (475)
T ss_pred eEEeccccccccccCccCCCcH--HHHHHHHHHcCCCccccCCcc
Confidence 6553 22 5554 334444 3899999999973
No 468
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=87.98 E-value=4.3 Score=40.95 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHH-H
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGE-D 408 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~-d 408 (462)
+.++..+.+++.|+|.+-++-.| ..|-+.++| .+..+.+++|++.+ ++|++-=||=..++ +
T Consensus 154 ~peea~~Fv~~TgvD~LAvaiGt--------------~HG~yk~~p--~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~ 215 (282)
T TIGR01858 154 DPQEAKEFVEATGVDSLAVAIGT--------------AHGLYKKTP--KLDFDRLAEIREVV--DVPLVLHGASDVPDED 215 (282)
T ss_pred CHHHHHHHHHHHCcCEEecccCc--------------cccCcCCCC--ccCHHHHHHHHHHh--CCCeEEecCCCCCHHH
Confidence 44566677789999999887554 235555554 35778999999999 68988888766654 5
Q ss_pred HHHHHHhCCCEEEEchhhhh
Q 012517 409 AYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali~ 428 (462)
..+++..|..=|-++|.+.+
T Consensus 216 ~~~ai~~Gi~KiNi~T~l~~ 235 (282)
T TIGR01858 216 VRRTIELGICKVNVATELKI 235 (282)
T ss_pred HHHHHHcCCeEEEeCcHHHH
Confidence 56678899999999999853
No 469
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=87.86 E-value=2.3 Score=41.36 Aligned_cols=100 Identities=16% Similarity=0.242 Sum_probs=67.3
Q ss_pred EEEecCCCC-hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccE
Q 012517 319 LVKIAPDLS-KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPL 397 (462)
Q Consensus 319 ~vKispdl~-~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipI 397 (462)
+.||-||-. .+...++++.+.+.|.|+|.+..|+.-. .+...+++.++++. .+||
T Consensus 3 ~~liDPdK~~~~~~~~~~~~~~~~gtdai~vGGS~~vt---------------------~~~~~~~v~~ik~~---~lPv 58 (223)
T TIGR01768 3 FTLIDPDKTNPSEADEIAKAAAESGTDAILIGGSQGVT---------------------YEKTDTLIEALRRY---GLPI 58 (223)
T ss_pred eeeECCCCCCccccHHHHHHHHhcCCCEEEEcCCCccc---------------------HHHHHHHHHHHhcc---CCCE
Confidence 578888843 2345678999999999999998875110 12245677888864 3888
Q ss_pred E-EecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcC
Q 012517 398 I-GCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDG 449 (462)
Q Consensus 398 I-g~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G 449 (462)
| -.|.+. .+--+||++-+-+-+=-++|.|+-....+-...+.+.+
T Consensus 59 ilfp~~~~-------~i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~ 104 (223)
T TIGR01768 59 ILFPSNPT-------NVSRDADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIG 104 (223)
T ss_pred EEeCCCcc-------ccCcCCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhc
Confidence 7 555543 23467999999888866779887766544444444433
No 470
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=87.78 E-value=13 Score=37.77 Aligned_cols=129 Identities=14% Similarity=0.193 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCCh-hhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCC-
Q 012517 294 LKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSK-EDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGL- 371 (462)
Q Consensus 294 l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~-~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGl- 371 (462)
+.+++..+++.++. .++||++-+-..... .++...++.++++|+.||.+=..+... ..|-+
T Consensus 60 ~~e~~~~~~~I~~~------~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk-----------~cg~~~ 122 (290)
T TIGR02321 60 MSTHLEMMRAIAST------VSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPK-----------DTSLRT 122 (290)
T ss_pred HHHHHHHHHHHHhc------cCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCc-----------cccccc
Confidence 45666666555432 479999998766543 257777899999999999875432100 11212
Q ss_pred CC-CcCccchHHHHHHHHHhc----CCCccEEEecCCC----CHHHHHHH----HHhCCCEEEEchhhhhcCCChHHHHH
Q 012517 372 SG-KPLLSLSNNILKEMYLLT----RGKIPLIGCGGIS----SGEDAYRK----IRAGATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 372 SG-~~l~~~al~~v~~i~~~~----~~~ipIIg~GGI~----s~~dA~e~----i~aGAd~Vqv~Tali~~GP~~i~~i~ 438 (462)
.| +++.+.. +.+.+|+... +.++-|++=-... ..++|++. .++|||.|.+-..+ ..+..+.++.
T Consensus 123 ~g~~~l~~~e-e~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~--~~~~ei~~~~ 199 (290)
T TIGR02321 123 DGRQELVRIE-EFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ--KTPDEILAFV 199 (290)
T ss_pred CCCccccCHH-HHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHH
Confidence 34 3343332 3444444322 2234444422211 23676654 46899999885433 3566777777
Q ss_pred HHHH
Q 012517 439 AELA 442 (462)
Q Consensus 439 ~~L~ 442 (462)
+++.
T Consensus 200 ~~~~ 203 (290)
T TIGR02321 200 KSWP 203 (290)
T ss_pred HhcC
Confidence 7654
No 471
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=87.77 E-value=9.8 Score=38.83 Aligned_cols=119 Identities=13% Similarity=0.231 Sum_probs=71.8
Q ss_pred CCEEEEecCC-------------CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHH
Q 012517 316 PPLLVKIAPD-------------LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNN 382 (462)
Q Consensus 316 ~Pv~vKispd-------------l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~ 382 (462)
-|+||.=..+ ++.+.+.+.++.+.+.|+.+|++..-...+ +.. ....+.-.. ...+
T Consensus 35 ~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~K-d~~-------gs~A~~~~g---~v~~ 103 (322)
T PRK13384 35 YPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMPFGISHHK-DAK-------GSDTWDDNG---LLAR 103 (322)
T ss_pred eeEEEecCCCCceecCCCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCC-------cccccCCCC---hHHH
Confidence 5888865433 344678889999999999999988652111 111 111121111 2456
Q ss_pred HHHHHHHhcC----------------CCccEEEecCCCCH-------HHHHHHHHhCCCEEEEchhhhhcCCChHHHHHH
Q 012517 383 ILKEMYLLTR----------------GKIPLIGCGGISSG-------EDAYRKIRAGATLVQLYTAFAYGGPALIPQIKA 439 (462)
Q Consensus 383 ~v~~i~~~~~----------------~~ipIIg~GGI~s~-------~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~ 439 (462)
.|+.+++.++ |..-|+-.|.|.+- +.|...-+||||.|.=.-- .. +-+..|+
T Consensus 104 air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~~g~i~ND~Tl~~L~~~Als~A~AGADiVAPSdM--MD--GrV~aIR- 178 (322)
T PRK13384 104 MVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLHNDEVDNDATVENLVKQSVTAAKAGADMLAPSAM--MD--GQVKAIR- 178 (322)
T ss_pred HHHHHHHHCCCeEEEeeeecccCCCCCceeeccCCcCccHHHHHHHHHHHHHHHHcCCCeEecccc--cc--cHHHHHH-
Confidence 7788888875 23334445567664 4566777899998854332 23 3555555
Q ss_pred HHHHHHHHcCCCCH
Q 012517 440 ELAECLERDGFKSI 453 (462)
Q Consensus 440 ~L~~~l~~~G~~si 453 (462)
+.|+++||.++
T Consensus 179 ---~aLd~~g~~~v 189 (322)
T PRK13384 179 ---QGLDAAGFEHV 189 (322)
T ss_pred ---HHHHHCCCCCC
Confidence 45667898765
No 472
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=87.70 E-value=22 Score=35.03 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecC-------
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGG------- 402 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GG------- 402 (462)
.+.++++...+.|.||++++- +-++++++.++.+.+| .+=|
T Consensus 144 ~v~~~a~~~~~~G~dgvv~~~-------------------------------~e~~~ir~~~g~~~~i-ltPGIg~~~~~ 191 (240)
T COG0284 144 QVLRLAKLAGEAGLDGVVCSA-------------------------------EEVAAIREILGPDFLI-LTPGIGAGSQG 191 (240)
T ss_pred HHHHHHHHhccCCceEEEcCH-------------------------------HHHHHHHHhcCCCcEE-ECCCcCcCcCC
Confidence 456666667777888887542 2245566665433333 3333
Q ss_pred -----CCCHHHHHHHHHhCCCEEEEchhhhhc
Q 012517 403 -----ISSGEDAYRKIRAGATLVQLYTAFAYG 429 (462)
Q Consensus 403 -----I~s~~dA~e~i~aGAd~Vqv~Tali~~ 429 (462)
+.++.+ .+.+|||.+-+++++...
T Consensus 192 gdQ~~~~t~~~---A~~~Gad~ivVGR~I~~a 220 (240)
T COG0284 192 GDQGRVMTPGE---AVRAGADYIVVGRPITQA 220 (240)
T ss_pred CCcccccCHHH---HHhcCCCEEEEChhhhcC
Confidence 444554 456999999999999654
No 473
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=87.53 E-value=5.4 Score=36.14 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchhhhhcCCCh-HHHHHHHHHHHHH
Q 012517 380 SNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPAL-IPQIKAELAECLE 446 (462)
Q Consensus 380 al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~-i~~i~~~L~~~l~ 446 (462)
...++..+++.-.++|. +.+||+-.++|..++-+.|.+-| | +|+. +..+.+.+...|.
T Consensus 80 ~~~lve~lre~G~~~i~-v~~GGvip~~d~~~l~~~G~~~i-------f-~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 80 VPGLVEALREAGVEDIL-VVVGGVIPPGDYQELKEMGVDRI-------F-GPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHHHHHHHHHhCCcceE-EeecCccCchhHHHHHHhCccee-------e-CCCCCHHHHHHHHHHHHH
Confidence 34566667776544454 68999999999888888998866 3 4643 3444444444443
No 474
>PLN02417 dihydrodipicolinate synthase
Probab=87.49 E-value=26 Score=35.00 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=59.8
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
.+.+.++.+.+ .+|.|.+|=|+ |.-...+.+.-.++++.+.+.. ..++||++=++.. +.++..++++
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~~~Gst----GE~~~ls~~Er~~~~~~~~~~~-------~~~~pvi~gv~~~-~t~~~i~~a~ 90 (280)
T PLN02417 23 AYDSLVNMQIENGAEGLIVGGTT----GEGQLMSWDEHIMLIGHTVNCF-------GGKIKVIGNTGSN-STREAIHATE 90 (280)
T ss_pred HHHHHHHHHHHcCCCEEEECccC----cchhhCCHHHHHHHHHHHHHHh-------CCCCcEEEECCCc-cHHHHHHHHH
Confidence 55555555443 59999998654 3333344555566777766654 2468999999764 3357889999
Q ss_pred HHHHcCCcEEEEecCCccC
Q 012517 337 VAVALRLDGLIISNTTISR 355 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r 355 (462)
.+.+.|+|++.+....+.+
T Consensus 91 ~a~~~Gadav~~~~P~y~~ 109 (280)
T PLN02417 91 QGFAVGMHAALHINPYYGK 109 (280)
T ss_pred HHHHcCCCEEEEcCCccCC
Confidence 9999999999998765444
No 475
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=87.40 E-value=12 Score=36.07 Aligned_cols=124 Identities=17% Similarity=0.287 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhh
Q 012517 252 SEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKED 330 (462)
Q Consensus 252 t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~ 330 (462)
++| +-+..++.+.+ ..+.|||-+.||. ..+.++.++++. .-+++---.=++.++
T Consensus 23 ~~e---~a~~~a~Ali~gGi~~IEITl~sp~------------a~e~I~~l~~~~----------p~~lIGAGTVL~~~q 77 (211)
T COG0800 23 DVE---EALPLAKALIEGGIPAIEITLRTPA------------ALEAIRALAKEF----------PEALIGAGTVLNPEQ 77 (211)
T ss_pred CHH---HHHHHHHHHHHcCCCeEEEecCCCC------------HHHHHHHHHHhC----------cccEEccccccCHHH
Confidence 455 44555555555 4999999998874 235566665542 123333222355444
Q ss_pred HHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHH
Q 012517 331 LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAY 410 (462)
Q Consensus 331 ~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~ 410 (462)
++.+.++|++.++-=|.+ -++++...+. ++|+ +=|+.|+.++.
T Consensus 78 ----~~~a~~aGa~fiVsP~~~----------------------------~ev~~~a~~~---~ip~--~PG~~TptEi~ 120 (211)
T COG0800 78 ----ARQAIAAGAQFIVSPGLN----------------------------PEVAKAANRY---GIPY--IPGVATPTEIM 120 (211)
T ss_pred ----HHHHHHcCCCEEECCCCC----------------------------HHHHHHHHhC---CCcc--cCCCCCHHHHH
Confidence 466778999987632221 1333333222 4555 46999999999
Q ss_pred HHHHhCCCEEEEchhhhhcCCChHHHH
Q 012517 411 RKIRAGATLVQLYTAFAYGGPALIPQI 437 (462)
Q Consensus 411 e~i~aGAd~Vqv~Tali~~GP~~i~~i 437 (462)
..+++|++.+-+.-+=...||.+++-+
T Consensus 121 ~Ale~G~~~lK~FPa~~~Gg~~~~ka~ 147 (211)
T COG0800 121 AALELGASALKFFPAEVVGGPAMLKAL 147 (211)
T ss_pred HHHHcChhheeecCccccCcHHHHHHH
Confidence 999999999999988877677666554
No 476
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=87.40 E-value=16 Score=37.38 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=42.1
Q ss_pred HHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHH
Q 012517 259 YVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAV 337 (462)
Q Consensus 259 y~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~ 337 (462)
+.+.++.+.+ .+|+|.|+- .|..- ..+.+..--+.+..|++. .++||+. ..|+. +..+..+.
T Consensus 150 ~~~~a~~l~~~Gvd~i~Vh~---Rt~~~-~y~g~~~~~~~i~~ik~~---------~~iPVi~--nGdI~--t~~da~~~ 212 (312)
T PRK10550 150 KFEIADAVQQAGATELVVHG---RTKED-GYRAEHINWQAIGEIRQR---------LTIPVIA--NGEIW--DWQSAQQC 212 (312)
T ss_pred HHHHHHHHHhcCCCEEEECC---CCCcc-CCCCCcccHHHHHHHHhh---------cCCcEEE--eCCcC--CHHHHHHH
Confidence 3444444443 299999863 22210 111111012556666654 2578754 45554 44555566
Q ss_pred HHHcCCcEEEEecCCc
Q 012517 338 AVALRLDGLIISNTTI 353 (462)
Q Consensus 338 ~~~~GvdgIivsNTt~ 353 (462)
+.+.|+|||-+.-..+
T Consensus 213 l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 213 MAITGCDAVMIGRGAL 228 (312)
T ss_pred HhccCCCEEEEcHHhH
Confidence 6778999998865443
No 477
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=87.13 E-value=14 Score=39.38 Aligned_cols=121 Identities=17% Similarity=0.074 Sum_probs=73.3
Q ss_pred CcccccCCCCchhHHHHHHHHHHhhccCcccccccCCCCCCCcccCCCCCCCceEEEEecCCC--CCHHHHHHHHHHHHH
Q 012517 188 GAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNK--TSEDAAADYVQGVHT 265 (462)
Q Consensus 188 ~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~nk--~t~~~~~dy~~~~~~ 265 (462)
..++..+.=+.-|++-+.+.+... ..|+..++-|.| .+++ +|.+.+..
T Consensus 135 ~~~~~~F~GP~fGi~g~R~~lgv~---------------------------~RPL~gtiiKPklGLsp~---~~a~~~y~ 184 (424)
T cd08208 135 ETYLADFEGPKFGIAGLRERLQAH---------------------------DRPIFFGVIKPNIGLPPG---EFAELGYQ 184 (424)
T ss_pred HHHHhcCCCCCCChhhHHHHhCCC---------------------------CCCeeeeeecccccCCHH---HHHHHHHH
Confidence 346666665666776655544321 125555666653 4676 88888887
Q ss_pred Hccc-CcEEEE--eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcC
Q 012517 266 LSQY-ADYLVI--NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALR 342 (462)
Q Consensus 266 l~~~-aD~lei--NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~G 342 (462)
+... .|+|-= |+.+|-.. .-.+.+..+.++++++.+++ +.++-..+=|+-+ .+++.+-++.+.+.|
T Consensus 185 ~~~GGvD~IKDDE~l~~q~f~-----p~~eRv~~~~~ai~~a~~eT----G~~~~ya~NiT~~--~~em~~ra~~a~~~G 253 (424)
T cd08208 185 SWLGGLDIAKDDEMLADVDWC-----PLEERAALLGKARRRAEAET----GVPKIYLANITDE--VDRLMELHDVAVRNG 253 (424)
T ss_pred HHcCCcccccccccccCCCCC-----CHHHHHHHHHHHHHHHHHhh----CCcceEEEEccCC--HHHHHHHHHHHHHhC
Confidence 7753 687643 33332211 11255666667776666544 3444455667654 458888999999999
Q ss_pred CcEEEEe
Q 012517 343 LDGLIIS 349 (462)
Q Consensus 343 vdgIivs 349 (462)
++++.+.
T Consensus 254 ~~~vmv~ 260 (424)
T cd08208 254 ANALLIN 260 (424)
T ss_pred CCEEEEe
Confidence 9887654
No 478
>PLN02389 biotin synthase
Probab=87.06 E-value=27 Score=36.73 Aligned_cols=158 Identities=11% Similarity=0.060 Sum_probs=91.0
Q ss_pred cCcEEEEeccC-CCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCE--EEEecCCCChhhHHHHHHHHHHc--CC
Q 012517 269 YADYLVINVSS-PNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPL--LVKIAPDLSKEDLEDIAAVAVAL--RL 343 (462)
Q Consensus 269 ~aD~leiNvSs-Pnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv--~vKispdl~~~~~~~ia~~~~~~--Gv 343 (462)
.+|.+.+|+-+ |. -.+..-....+.+.++.++.+.+. .+++ .+=+..+.+.+|..+.+..+.+. ..
T Consensus 188 Gld~~~~~LeTs~~--~y~~i~~~~s~e~rl~ti~~a~~~-------Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~ 258 (379)
T PLN02389 188 GLTAYNHNLDTSRE--YYPNVITTRSYDDRLETLEAVREA-------GISVCSGGIIGLGEAEEDRVGLLHTLATLPEHP 258 (379)
T ss_pred CCCEEEeeecCChH--HhCCcCCCCCHHHHHHHHHHHHHc-------CCeEeEEEEECCCCCHHHHHHHHHHHHhcccCC
Confidence 39999999865 21 112222234566677777666431 2333 22223356677888888888877 46
Q ss_pred cEEEEecCCccCCCCCCCCCcccccCCCCCCcCcc-chHHHHHHHHHhcCCCccEEEecCCCCHHH-HHHHHHhCCCEEE
Q 012517 344 DGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLS-LSNNILKEMYLLTRGKIPLIGCGGISSGED-AYRKIRAGATLVQ 421 (462)
Q Consensus 344 dgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~-~al~~v~~i~~~~~~~ipIIg~GGI~s~~d-A~e~i~aGAd~Vq 421 (462)
|.|.+..-+ -.++ .+. ... +++.+ ..++.++-.|-.++..+.-|..|-+.-+.+ ....+.+||+.++
T Consensus 259 ~~v~l~~l~-P~~G----TpL----~~~--~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~ 327 (379)
T PLN02389 259 ESVPINALV-AVKG----TPL----EDQ--KPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIF 327 (379)
T ss_pred cEEecccce-ecCC----CcC----CCC--CCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEE
Confidence 766553221 1111 111 111 11222 346777777777765554455555444444 7888899999999
Q ss_pred Echh-hhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 422 LYTA-FAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 422 v~Ta-li~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
++-= |-..|..+-.++ +.+++.||.
T Consensus 328 ~g~~~Ltt~g~~~~~d~-----~~~~~lg~~ 353 (379)
T PLN02389 328 TGDKLLTTPNNDFDADQ-----AMFKELGLI 353 (379)
T ss_pred ECCcccCCCCCChHHHH-----HHHHHcCCC
Confidence 9997 766777765554 456667875
No 479
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=87.01 E-value=32 Score=33.86 Aligned_cols=135 Identities=15% Similarity=0.169 Sum_probs=78.2
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
|-++.+..+.. .||.|.+++- +..|-.|+.| +.. +++.. +.|+=+-++|. .++.+
T Consensus 25 d~v~aA~~a~~aGAdgITvHlR----eDrRHI~d~D-v~~----L~~~~---------~~~lNlE~a~~------~em~~ 80 (239)
T PRK05265 25 DPVRAALIAEQAGADGITVHLR----EDRRHIRDRD-VRL----LRETL---------KTELNLEMAAT------EEMLD 80 (239)
T ss_pred CHHHHHHHHHHcCCCEEEecCC----CCcccCCHHH-HHH----HHHhc---------CCCEEeccCCC------HHHHH
Confidence 34444444444 3999999862 3345555544 222 22221 34666666653 35666
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+++..-|-+++.-- +.+. ....|||.=..-...-...++++++.- =++-++.- -+.+++....+.|
T Consensus 81 ia~~~kP~~vtLVPE---~r~E------~TTegGldv~~~~~~l~~~i~~L~~~g-IrVSLFid---P~~~qi~~A~~~G 147 (239)
T PRK05265 81 IALEVKPHQVTLVPE---KREE------LTTEGGLDVAGQFDKLKPAIARLKDAG-IRVSLFID---PDPEQIEAAAEVG 147 (239)
T ss_pred HHHHCCCCEEEECCC---CCCC------ccCCccchhhcCHHHHHHHHHHHHHCC-CEEEEEeC---CCHHHHHHHHHhC
Confidence 777777888876521 1111 113466643322333445566665541 13444543 6789999999999
Q ss_pred CCEEEEchhhhhc
Q 012517 417 ATLVQLYTAFAYG 429 (462)
Q Consensus 417 Ad~Vqv~Tali~~ 429 (462)
|+.|.+||+-...
T Consensus 148 Ad~VELhTG~yA~ 160 (239)
T PRK05265 148 ADRIELHTGPYAD 160 (239)
T ss_pred cCEEEEechhhhc
Confidence 9999999998544
No 480
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=86.95 E-value=8 Score=39.67 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=59.8
Q ss_pred CCCCEEEEecCCCC-hhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcC
Q 012517 314 GPPPLLVKIAPDLS-KEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTR 392 (462)
Q Consensus 314 ~~~Pv~vKispdl~-~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~ 392 (462)
.+.|+++-+..... ..+..++.+++...++|++.+.=.... + . .-.+|...+...++.++.+++.+
T Consensus 111 ~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q--~-~---------~~~~~~~df~~~~~~i~~l~~~~- 177 (326)
T cd02811 111 PNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQ--E-A---------VQPEGDRDFRGWLERIEELVKAL- 177 (326)
T ss_pred CCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchH--h-h---------cCCCCCcCHHHHHHHHHHHHHhc-
Confidence 35788887754320 013345555666667898877421100 0 0 00011222333457788888888
Q ss_pred CCccEEE--ecCCCCHHHHHHHHHhCCCEEEEch
Q 012517 393 GKIPLIG--CGGISSGEDAYRKIRAGATLVQLYT 424 (462)
Q Consensus 393 ~~ipIIg--~GGI~s~~dA~e~i~aGAd~Vqv~T 424 (462)
++||+. +|--.+.++|....++|+|.|-+..
T Consensus 178 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 -SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 689887 4555889999999999999999854
No 481
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.92 E-value=3.2 Score=42.65 Aligned_cols=93 Identities=26% Similarity=0.243 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCccCCCC-CCC--CCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEE--e------
Q 012517 332 EDIAAVAVALRLDGLIISNTTISRPDP-VSK--NPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIG--C------ 400 (462)
Q Consensus 332 ~~ia~~~~~~GvdgIivsNTt~~r~~~-~~~--~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg--~------ 400 (462)
.+-|+.+.++|+|||-+...--..... +.. +.-..++|| |=.--....+++|+.+++.++.++||.. +
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGG-slenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~ 230 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG-SLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR 230 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCC-CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence 344556778999999775321000000 000 011235665 3111122357899999999977777764 2
Q ss_pred cCCCCHHHHHHHH----HhCCCEEEEchhh
Q 012517 401 GGISSGEDAYRKI----RAGATLVQLYTAF 426 (462)
Q Consensus 401 GGI~s~~dA~e~i----~aGAd~Vqv~Tal 426 (462)
+|. +.+|+.+++ ++|.|++.|..+.
T Consensus 231 ~g~-~~eea~~ia~~Le~~Gvd~iev~~g~ 259 (338)
T cd04733 231 GGF-TEEDALEVVEALEEAGVDLVELSGGT 259 (338)
T ss_pred CCC-CHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 455 677776555 4699999976553
No 482
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=86.89 E-value=13 Score=38.01 Aligned_cols=118 Identities=20% Similarity=0.269 Sum_probs=72.1
Q ss_pred CCEEEEecCC-------------CChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHH
Q 012517 316 PPLLVKIAPD-------------LSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNN 382 (462)
Q Consensus 316 ~Pv~vKispd-------------l~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~ 382 (462)
-||||+=.++ ++.+.+.+.++.+.+.|+..|++.... ...+... .-.+... -...+
T Consensus 33 ~PiFV~eg~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~-~~Kd~~g-------s~A~~~~---g~v~r 101 (323)
T PRK09283 33 YPLFVVEGENEREEIPSMPGVYRLSIDLLVKEAEEAVELGIPAVALFGVP-ELKDEDG-------SEAYNPD---GLVQR 101 (323)
T ss_pred eeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCcC-CCCCccc-------ccccCCC---CHHHH
Confidence 5888876544 245678899999999999999998762 1111110 0011111 12457
Q ss_pred HHHHHHHhcCCCccEE-----------------EecCCCCH-------HHHHHHHHhCCCEEEEchhhhhcCCChHHHHH
Q 012517 383 ILKEMYLLTRGKIPLI-----------------GCGGISSG-------EDAYRKIRAGATLVQLYTAFAYGGPALIPQIK 438 (462)
Q Consensus 383 ~v~~i~~~~~~~ipII-----------------g~GGI~s~-------~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~ 438 (462)
.|+.+++.++ ++-|| -.|-|.+- +.|...-+||||.|.=.-- .. +-+..|+
T Consensus 102 air~iK~~~p-~l~vi~DVcLc~YT~hGHcGil~~g~idND~Tl~~L~~~Al~~A~AGaDiVAPSdM--MD--GrV~aIR 176 (323)
T PRK09283 102 AIRAIKKAFP-ELGVITDVCLDEYTSHGHCGILEDGYVDNDETLELLAKQALSQAEAGADIVAPSDM--MD--GRVGAIR 176 (323)
T ss_pred HHHHHHHhCC-CcEEEEeeeccCCCCCCceecccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccc--cc--cHHHHHH
Confidence 7788888875 34444 34555553 4667777899998853332 23 4555555
Q ss_pred HHHHHHHHHcCCCCH
Q 012517 439 AELAECLERDGFKSI 453 (462)
Q Consensus 439 ~~L~~~l~~~G~~si 453 (462)
+.|+++||.++
T Consensus 177 ----~aLd~~g~~~v 187 (323)
T PRK09283 177 ----EALDEAGFTDV 187 (323)
T ss_pred ----HHHHHCCCCCC
Confidence 45667898765
No 483
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=86.72 E-value=34 Score=33.68 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=75.9
Q ss_pred HHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHH
Q 012517 258 DYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAA 336 (462)
Q Consensus 258 dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~ 336 (462)
|-++.+..+.. .||.|.+++- +..|-.|+.|. . .+++.+ +.|+=+-++|. .++.+
T Consensus 23 dpv~aA~~a~~aGAdgITvHlR----eDrRHI~d~Dv-~----~L~~~~---------~~~lNlE~a~t------~e~~~ 78 (239)
T PF03740_consen 23 DPVEAARIAEEAGADGITVHLR----EDRRHIQDRDV-R----RLRELV---------KTPLNLEMAPT------EEMVD 78 (239)
T ss_dssp -HHHHHHHHHHTT-SEEEEEB-----TT-SSS-HHHH-H----HHHHH----------SSEEEEEEESS------HHHHH
T ss_pred CHHHHHHHHHHcCCCEEEeccC----CCcCcCCHHHH-H----HHHHHc---------ccCEEeccCCC------HHHHH
Confidence 34444444443 3999999962 33455555442 2 233322 45777788775 34555
Q ss_pred HHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC
Q 012517 337 VAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG 416 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG 416 (462)
.+++..-|-+++.--. .+. ....|||.=..-.+.-...+.++++.- =++-++.-- +.+++....+.|
T Consensus 79 ia~~~kP~~vtLVPE~---r~e------~TTegGldv~~~~~~l~~~i~~L~~~g-IrvSLFiDP---~~~qi~~A~~~G 145 (239)
T PF03740_consen 79 IALKVKPDQVTLVPEK---REE------LTTEGGLDVAGNRDRLKPVIKRLKDAG-IRVSLFIDP---DPEQIEAAKELG 145 (239)
T ss_dssp HHHHH--SEEEEE--S---GGG------BSTTSSB-TCGGHHHHHHHHHHHHHTT--EEEEEE-S----HHHHHHHHHTT
T ss_pred HHHhCCcCEEEECCCC---CCC------cCCCcCChhhcCHHHHHHHHHHHHhCC-CEEEEEeCC---CHHHHHHHHHcC
Confidence 6666667888776221 111 113577764443444456666776641 133444432 588888889999
Q ss_pred CCEEEEchhhhhcCCChHHHHHHH
Q 012517 417 ATLVQLYTAFAYGGPALIPQIKAE 440 (462)
Q Consensus 417 Ad~Vqv~Tali~~GP~~i~~i~~~ 440 (462)
|+.|.++|+-..+-..-..+..++
T Consensus 146 ad~VELhTG~yA~a~~~~~~~~~e 169 (239)
T PF03740_consen 146 ADRVELHTGPYANAFDDAEEAEEE 169 (239)
T ss_dssp -SEEEEETHHHHHHSSHHHHHHHH
T ss_pred CCEEEEehhHhhhhcCCHHHHHHH
Confidence 999999999865433333344433
No 484
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=86.55 E-value=25 Score=36.60 Aligned_cols=210 Identities=18% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHcCCccEEEeccccc---CCCCCCCCCceeeecC-CCcccccCCCCchhHHHHHHHHHHhhccCcccccccCCC
Q 012517 150 EAVEGLLGLGFGFVEVGSVTP---VPQEGNPKPRIFRLRQ-EGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSS 225 (462)
Q Consensus 150 e~~~~l~~lGfG~VevgtvT~---~pq~GNp~PR~frl~~-d~a~iN~~G~nn~G~~~~~~~l~~~~~~~~~~~~~~~~~ 225 (462)
+.++.|.++|+-.||+|+..- -||-+...-.+-++.. ...-+...-.|-.+++...+
T Consensus 72 ~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~~n~~die~A~~------------------- 132 (347)
T PLN02746 72 ELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLTPNLKGFEAAIA------------------- 132 (347)
T ss_pred HHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEcCCHHHHHHHHH-------------------
Q ss_pred CCCCcccCCCCCCCceEEEEec-----------CCCCCHHHHHHHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHH
Q 012517 226 SPNDEVKAGGKAGPGILGVNIG-----------KNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQL 294 (462)
Q Consensus 226 ~~~~~~p~~~~~~~~~lgvnig-----------~nk~t~~~~~dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l 294 (462)
-+.-.|++. -++..++.++.+.++++.+.+.-..+.+++|.
T Consensus 133 -------------~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~--------------- 184 (347)
T PLN02746 133 -------------AGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSC--------------- 184 (347)
T ss_pred -------------cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe---------------
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCC
Q 012517 295 KDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGK 374 (462)
Q Consensus 295 ~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~ 374 (462)
....|.-=+..|+ .+.++++.+.+.|+|-|.+..|+ |-
T Consensus 185 ------------------~fg~p~~~r~~~~----~l~~~~~~~~~~Gad~I~l~DT~--------------------G~ 222 (347)
T PLN02746 185 ------------------VVGCPIEGPVPPS----KVAYVAKELYDMGCYEISLGDTI--------------------GV 222 (347)
T ss_pred ------------------eecCCccCCCCHH----HHHHHHHHHHHcCCCEEEecCCc--------------------CC
Q ss_pred cCccchHHHHHHHHHhcCCCccEEEecCCCC----HHHHHHHHHhCCCEEEEchhhhhcCC------ChHHHHHHHHHHH
Q 012517 375 PLLSLSNNILKEMYLLTRGKIPLIGCGGISS----GEDAYRKIRAGATLVQLYTAFAYGGP------ALIPQIKAELAEC 444 (462)
Q Consensus 375 ~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s----~~dA~e~i~aGAd~Vqv~Tali~~GP------~~i~~i~~~L~~~ 444 (462)
.......++++.+++.+ ..+-|+.=.=.+ -.-++..+++||+.|...-.=+ |- ..=+--.+++...
T Consensus 223 a~P~~v~~lv~~l~~~~--~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~Gl--GecPfa~graGN~atE~lv~~ 298 (347)
T PLN02746 223 GTPGTVVPMLEAVMAVV--PVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGL--GGCPYAKGASGNVATEDVVYM 298 (347)
T ss_pred cCHHHHHHHHHHHHHhC--CCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccc--cCCCCCCCCCCChhHHHHHHH
Q ss_pred HHHcCCCC
Q 012517 445 LERDGFKS 452 (462)
Q Consensus 445 l~~~G~~s 452 (462)
|+..|+.+
T Consensus 299 L~~~G~~t 306 (347)
T PLN02746 299 LNGLGVST 306 (347)
T ss_pred HHhcCCCC
No 485
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=86.49 E-value=6.3 Score=39.79 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHH-H
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGE-D 408 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~-d 408 (462)
+.++..+.+.+.|+|.+-++..| ..|-|.|+| .+..+.+++|++.+ ++|++-=||=..++ +
T Consensus 156 ~peeA~~Fv~~TgvD~LAvaiGt--------------~HG~y~~~p--~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~ 217 (284)
T PRK12737 156 NPDAAAEFVERTGIDSLAVAIGT--------------AHGLYKGEP--KLDFERLAEIREKV--SIPLVLHGASGVPDED 217 (284)
T ss_pred CHHHHHHHHHHhCCCEEeeccCc--------------cccccCCCC--cCCHHHHHHHHHHh--CCCEEEeCCCCCCHHH
Confidence 45666677778999999888665 234455544 35778899999998 68988877765554 5
Q ss_pred HHHHHHhCCCEEEEchhhh
Q 012517 409 AYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali 427 (462)
..++++.|..=|-++|.+.
T Consensus 218 ~~kai~~Gi~KiNi~T~l~ 236 (284)
T PRK12737 218 VKKAISLGICKVNVATELK 236 (284)
T ss_pred HHHHHHCCCeEEEeCcHHH
Confidence 6668899999999999985
No 486
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=86.44 E-value=7.4 Score=41.07 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=74.3
Q ss_pred cCcEEEEecc-CCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEE
Q 012517 269 YADYLVINVS-SPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLI 347 (462)
Q Consensus 269 ~aD~leiNvS-sPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIi 347 (462)
.+..+-+.+. .|.. |.. +.+.-.+.+++|+++. +.++.|+|-....++.++..++++.+++.++..|-
T Consensus 172 Gf~~~Kik~~~g~~~-g~~---~~~~di~~v~avReav-------G~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wiE 240 (394)
T PRK15440 172 GFIGGKMPLHHGPAD-GDA---GLRKNAAMVADMREKV-------GDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWIE 240 (394)
T ss_pred CCCEEEEcCCcCccc-chH---HHHHHHHHHHHHHHhh-------CCCCeEEEECCCCCCHHHHHHHHHHhhhcCCccee
Confidence 4777777653 2211 111 1122345566666554 45788888887777878889999999988766541
Q ss_pred EecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecC--CCCHHHHHHHHHhC-CCEEEEch
Q 012517 348 ISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGG--ISSGEDAYRKIRAG-ATLVQLYT 424 (462)
Q Consensus 348 vsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GG--I~s~~dA~e~i~aG-Ad~Vqv~T 424 (462)
.|+.+-..+-.+++++.+ .+||...+| +.+..|+.++|+.| +|.+|+--
T Consensus 241 --------------------------EPl~~~d~~~~~~L~~~~--~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~ 292 (394)
T PRK15440 241 --------------------------ECLPPDDYWGYRELKRNA--PAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDV 292 (394)
T ss_pred --------------------------CCCCcccHHHHHHHHHhC--CCCCceecCCCccCHHHHHHHHHcCCCCEEeCCc
Confidence 122233456667788776 444444434 55778888888876 78888765
Q ss_pred hh
Q 012517 425 AF 426 (462)
Q Consensus 425 al 426 (462)
+-
T Consensus 293 ~~ 294 (394)
T PRK15440 293 GW 294 (394)
T ss_pred cc
Confidence 55
No 487
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=86.35 E-value=6 Score=39.77 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCC-CcCccchHHHHHHHHHhcCCCccEEEecCCCCH-H
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSG-KPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG-E 407 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG-~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~-~ 407 (462)
+.++..+.+.+.|+|.+-++..|. .|.|.+ .| .+..+.++++++.+ ++|++-=||=..+ +
T Consensus 149 ~pe~a~~Fv~~TgvD~LAvsiGt~--------------HG~Y~~~~p--~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e 210 (276)
T cd00947 149 DPEEAEEFVEETGVDALAVAIGTS--------------HGAYKGGEP--KLDFDRLKEIAERV--NVPLVLHGGSGIPDE 210 (276)
T ss_pred CHHHHHHHHHHHCCCEEEeccCcc--------------ccccCCCCC--ccCHHHHHHHHHHh--CCCEEEeCCCCCCHH
Confidence 456677777889999998886551 233333 33 24678999999999 7999999988877 4
Q ss_pred HHHHHHHhCCCEEEEchhhhh
Q 012517 408 DAYRKIRAGATLVQLYTAFAY 428 (462)
Q Consensus 408 dA~e~i~aGAd~Vqv~Tali~ 428 (462)
+..++++.|..=|-++|.+.+
T Consensus 211 ~~~~ai~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 211 QIRKAIKLGVCKININTDLRL 231 (276)
T ss_pred HHHHHHHcCCeEEEeChHHHH
Confidence 588888999999999999854
No 488
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=86.34 E-value=11 Score=39.42 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=56.5
Q ss_pred CChhhHHHH-------HHHHHHcCCcEEEEecCCccCCCC-CC--CCCcccccCCCCCCcCccchHHHHHHHHHhcCCCc
Q 012517 326 LSKEDLEDI-------AAVAVALRLDGLIISNTTISRPDP-VS--KNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKI 395 (462)
Q Consensus 326 l~~~~~~~i-------a~~~~~~GvdgIivsNTt~~r~~~-~~--~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~i 395 (462)
++.+||.++ |+.+.++|.|||-++..--...+. +. .+.-..++||- =..-....+++++.+++.++.+.
T Consensus 139 mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~vg~~~ 217 (363)
T COG1902 139 LTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGS-LENRARFLLEVVDAVREAVGADF 217 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCc-HHHHHHHHHHHHHHHHHHhCCCc
Confidence 566666554 445778999999876421000000 00 01112356661 11112246789999999998776
Q ss_pred cEEE--------ecCCCCHHHHHH---HH-HhC-CCEEEEchhhhh
Q 012517 396 PLIG--------CGGISSGEDAYR---KI-RAG-ATLVQLYTAFAY 428 (462)
Q Consensus 396 pIIg--------~GGI~s~~dA~e---~i-~aG-Ad~Vqv~Tali~ 428 (462)
||.. .++=.+.+++.+ .| +.| .|.+-+..+-.+
T Consensus 218 ~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~ 263 (363)
T COG1902 218 PVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYE 263 (363)
T ss_pred eEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeeccccc
Confidence 5542 332223444433 33 478 699999887654
No 489
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=86.25 E-value=31 Score=34.44 Aligned_cols=128 Identities=19% Similarity=0.185 Sum_probs=78.3
Q ss_pred CcE--EEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecC---------CCChhhHHHHHHHH
Q 012517 270 ADY--LVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAP---------DLSKEDLEDIAAVA 338 (462)
Q Consensus 270 aD~--leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKisp---------dl~~~~~~~ia~~~ 338 (462)
+|+ +.||+.|.+ +.+.++++-+.+.++ ++ -..|+++=+-| +.+.+.+...++..
T Consensus 111 adAV~~~Vy~Gse~--------e~~~i~~~~~v~~~a-~~------~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRla 175 (265)
T COG1830 111 ADAVGATVYVGSET--------EREMIENISQVVEDA-HE------LGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLA 175 (265)
T ss_pred CcEEEEEEecCCcc--------hHHHHHHHHHHHHHH-HH------cCCceEEEEeccCCcccccccccHHHHHHHHHHH
Confidence 676 456777643 345555555554443 33 26788773322 23334455666778
Q ss_pred HHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCC--HHH----HHHH
Q 012517 339 VALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISS--GED----AYRK 412 (462)
Q Consensus 339 ~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s--~~d----A~e~ 412 (462)
.+.|+|-|-+--|. +.+-.+++-+.++ +||+-.||=.+ .++ ..+.
T Consensus 176 aelGADIiK~~ytg---------------------------~~e~F~~vv~~~~--vpVviaGG~k~~~~~~~l~~~~~a 226 (265)
T COG1830 176 AELGADIIKTKYTG---------------------------DPESFRRVVAACG--VPVVIAGGPKTETEREFLEMVTAA 226 (265)
T ss_pred HHhcCCeEeecCCC---------------------------ChHHHHHHHHhCC--CCEEEeCCCCCCChHHHHHHHHHH
Confidence 89999977532111 1144566677774 99999999776 334 4455
Q ss_pred HHhCCCEEEEchhhhhcCCChHHHHHHHHHH
Q 012517 413 IRAGATLVQLYTAFAYGGPALIPQIKAELAE 443 (462)
Q Consensus 413 i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~ 443 (462)
|++||..+-+++=+. |- ..+..+.+.+..
T Consensus 227 i~aGa~G~~~GRNif-Q~-~~p~~m~~Ai~~ 255 (265)
T COG1830 227 IEAGAMGVAVGRNIF-QH-EDPEAMVKAIQA 255 (265)
T ss_pred HHccCcchhhhhhhh-cc-CChHHHHHHHHH
Confidence 679999999999884 32 344456555544
No 490
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=86.20 E-value=36 Score=33.46 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=91.1
Q ss_pred cEEeCCCCCCCHHHHHHHHcCCccEEEecccccCCCCCCCCCceeeecCCCcccccCCCCc---hhHHHHHHHHHHhhcc
Q 012517 138 PLGLAAGFDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNS---EGIVAVAKRLGAQHGK 214 (462)
Q Consensus 138 PiglAAG~dk~~e~~~~l~~lGfG~VevgtvT~~pq~GNp~PR~frl~~d~a~iN~~G~nn---~G~~~~~~~l~~~~~~ 214 (462)
||.+..-+|.-.. .-..+.||-++-+++-..- ..+|+++ -.++.+....+...+-
T Consensus 13 ~i~~~~ayD~~sA--~i~e~aG~dai~v~~s~~a--------------------~~~G~pD~~~vtl~em~~~~~~I~r~ 70 (240)
T cd06556 13 RFATLTAYDYSMA--KQFADAGLNVMLVGDSQGM--------------------TVAGYDDTLPYPVNDVPYHVRAVRRG 70 (240)
T ss_pred eEEEecCCCHHHH--HHHHHcCCCEEEEChHHHH--------------------HhcCCCCCCCcCHHHHHHHHHHHHhh
Confidence 5555555664222 2355679999988875421 2233333 2356666666654321
Q ss_pred CcccccccCCCCCCCcccCCCCCCCceEEEEecC-CCCCHHHHHHHHHHHHHHcc-cCcEEEEeccCCCCCCcccccCch
Q 012517 215 RKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGK-NKTSEDAAADYVQGVHTLSQ-YADYLVINVSSPNTPGLRMLQGRK 292 (462)
Q Consensus 215 ~~~~~~~~~~~~~~~~~p~~~~~~~~~lgvnig~-nk~t~~~~~dy~~~~~~l~~-~aD~leiNvSsPnt~glr~lq~~~ 292 (462)
++ ..||.+.+-. ...+++ +..+.++++.+ .+++|.|- +..
T Consensus 71 ----------------~~------~~pviaD~~~G~g~~~~---~~~~~~~~l~~aGa~gv~iE-------------D~~ 112 (240)
T cd06556 71 ----------------AP------LALIVADLPFGAYGAPT---AAFELAKTFMRAGAAGVKIE-------------GGE 112 (240)
T ss_pred ----------------CC------CCCEEEeCCCCCCcCHH---HHHHHHHHHHHcCCcEEEEc-------------CcH
Confidence 00 1256677621 112434 44555555544 37776542 112
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCEEEEecCC-----------------CChhhHHHHHHHHHHcCCcEEEEecCCccC
Q 012517 293 QLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPD-----------------LSKEDLEDIAAVAVALRLDGLIISNTTISR 355 (462)
Q Consensus 293 ~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispd-----------------l~~~~~~~ia~~~~~~GvdgIivsNTt~~r 355 (462)
...+.+++++++ .+||+.++--. ...+++.+-+.+.+++|+|+|.+-..
T Consensus 113 ~~~~~i~ai~~a----------~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~---- 178 (240)
T cd06556 113 WHIETLQMLTAA----------AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV---- 178 (240)
T ss_pred HHHHHHHHHHHc----------CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC----
Confidence 233445555432 47888887531 11235556677788999999987421
Q ss_pred CCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecC
Q 012517 356 PDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGG 402 (462)
Q Consensus 356 ~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GG 402 (462)
..+.++++.+.+ ++|+++.|.
T Consensus 179 ------------------------~~e~~~~i~~~~--~~P~~~~ga 199 (240)
T cd06556 179 ------------------------PVELAKQITEAL--AIPLAGIGA 199 (240)
T ss_pred ------------------------CHHHHHHHHHhC--CCCEEEEec
Confidence 246778888888 689987653
No 491
>PRK07094 biotin synthase; Provisional
Probab=86.14 E-value=11 Score=38.17 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=81.8
Q ss_pred HHHHHHHHHcccCcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCE----EEEecCCCChhhHHH
Q 012517 258 DYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPL----LVKIAPDLSKEDLED 333 (462)
Q Consensus 258 dy~~~~~~l~~~aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv----~vKispdl~~~~~~~ 333 (462)
+.++.+++++ +|.+.+++-+-+..-+..+.......+.++.++...+ . .+++ ++= -|..+.+++.+
T Consensus 130 e~l~~Lk~aG--~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~-~------Gi~v~~~~iiG-lpget~ed~~~ 199 (323)
T PRK07094 130 EEYKAWKEAG--ADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKE-L------GYEVGSGFMVG-LPGQTLEDLAD 199 (323)
T ss_pred HHHHHHHHcC--CCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHH-c------CCeecceEEEE-CCCCCHHHHHH
Confidence 3444455554 8988888866543212222222344566666665542 1 2222 222 25677889999
Q ss_pred HHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCC--CCHHHHHH
Q 012517 334 IAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGI--SSGEDAYR 411 (462)
Q Consensus 334 ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI--~s~~dA~e 411 (462)
.++.+.+.+++.+.+..-+. .++ .+.. ... ++-....++.++..|-.++ +..|-.+++. ..++....
T Consensus 200 ~l~~l~~l~~~~v~~~~~~P-~pg----Tpl~----~~~-~~~~~~~~~~~a~~R~~lp-~~~i~~~~~~~~~~~~~~~~ 268 (323)
T PRK07094 200 DILFLKELDLDMIGIGPFIP-HPD----TPLK----DEK-GGSLELTLKVLALLRLLLP-DANIPATTALGTLNPDGREK 268 (323)
T ss_pred HHHHHHhCCCCeeeeecccc-CCC----CCcc----cCC-CCCHHHHHHHHHHHHHhCc-CCCCcccCCccccCchhHHH
Confidence 99999999999876653321 111 1111 111 1112345778888888886 4444444543 33455678
Q ss_pred HHHhCCCEEEE
Q 012517 412 KIRAGATLVQL 422 (462)
Q Consensus 412 ~i~aGAd~Vqv 422 (462)
.+.+||+.++.
T Consensus 269 ~l~~Gan~~~~ 279 (323)
T PRK07094 269 GLKAGANVVMP 279 (323)
T ss_pred HHHcCCceecC
Confidence 89999999875
No 492
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=85.79 E-value=8.5 Score=37.86 Aligned_cols=140 Identities=17% Similarity=0.172 Sum_probs=79.5
Q ss_pred HHHHHHcccCcEEEEeccCCCC-CCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCC--hhhHHHHHHH
Q 012517 261 QGVHTLSQYADYLVINVSSPNT-PGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLS--KEDLEDIAAV 337 (462)
Q Consensus 261 ~~~~~l~~~aD~leiNvSsPnt-~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~--~~~~~~ia~~ 337 (462)
+.+++++ +|.|-+-=|.-.. -|..+.. .-.+.+++..++..++.. ...||++-+.-... .++....++.
T Consensus 26 ~i~e~aG--~dai~v~~s~~a~~~G~pD~~-~vtl~em~~~~~~I~r~~-----~~~pviaD~~~G~g~~~~~~~~~~~~ 97 (240)
T cd06556 26 KQFADAG--LNVMLVGDSQGMTVAGYDDTL-PYPVNDVPYHVRAVRRGA-----PLALIVADLPFGAYGAPTAAFELAKT 97 (240)
T ss_pred HHHHHcC--CCEEEEChHHHHHhcCCCCCC-CcCHHHHHHHHHHHHhhC-----CCCCEEEeCCCCCCcCHHHHHHHHHH
Confidence 3444443 7877763211111 1333221 123455666665554321 24799999975532 2577788899
Q ss_pred HHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC-------------
Q 012517 338 AVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS------------- 404 (462)
Q Consensus 338 ~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~------------- 404 (462)
+.++|++||.+=... ...+.++.+++. .++|++==|.+
T Consensus 98 l~~aGa~gv~iED~~--------------------------~~~~~i~ai~~a---~i~ViaRtd~~pq~~~~~gg~~~~ 148 (240)
T cd06556 98 FMRAGAAGVKIEGGE--------------------------WHIETLQMLTAA---AVPVIAHTGLTPQSVNTSGGDEGQ 148 (240)
T ss_pred HHHcCCcEEEEcCcH--------------------------HHHHHHHHHHHc---CCeEEEEeCCchhhhhccCCceee
Confidence 999999999763210 123345555544 47888665542
Q ss_pred -----C----HHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHH
Q 012517 405 -----S----GEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441 (462)
Q Consensus 405 -----s----~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L 441 (462)
. -+.+..+.++|||+|-+- +. .+..++++.+++
T Consensus 149 ~~~~~~~~~ai~Ra~ay~~AGAd~i~~e-~~---~~e~~~~i~~~~ 190 (240)
T cd06556 149 YRGDEAGEQLIADALAYAPAGADLIVME-CV---PVELAKQITEAL 190 (240)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCEEEEc-CC---CHHHHHHHHHhC
Confidence 1 344566678999999875 22 356666666654
No 493
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=85.72 E-value=37 Score=33.74 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=84.7
Q ss_pred HHHHHHHHHcccCcEEEEecc-CCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEe--cCCCChhhHHHH
Q 012517 258 DYVQGVHTLSQYADYLVINVS-SPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI--APDLSKEDLEDI 334 (462)
Q Consensus 258 dy~~~~~~l~~~aD~leiNvS-sPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKi--spdl~~~~~~~i 334 (462)
+.++.++.++ +|.+-+++- +|.+ ...+.....+.+.+++++...+ ..+++.+-+ -.+.+.+++.+.
T Consensus 124 e~l~~Lk~aG--~~~v~i~~E~~~~~--~~~i~~~~s~~~~~~ai~~l~~-------~Gi~v~~~~i~Gl~et~~d~~~~ 192 (296)
T TIGR00433 124 EQAKRLKDAG--LDYYNHNLDTSQEF--YSNIISTHTYDDRVDTLENAKK-------AGLKVCSGGIFGLGETVEDRIGL 192 (296)
T ss_pred HHHHHHHHcC--CCEEEEcccCCHHH--HhhccCCCCHHHHHHHHHHHHH-------cCCEEEEeEEEeCCCCHHHHHHH
Confidence 3444445544 888777654 2221 1112222345566666665542 134543321 235567789999
Q ss_pred HHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCC-CHHHH-HH-
Q 012517 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGIS-SGEDA-YR- 411 (462)
Q Consensus 335 a~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~-s~~dA-~e- 411 (462)
++.+.+.|++.+.+..-++. ++ .+. ..++ ++-....++.+...+..++. ..|..+||=. ...+. ..
T Consensus 193 ~~~l~~l~~~~i~l~~l~p~-~g----T~l----~~~~-~~s~~~~~~~ia~~r~~lp~-~~i~~~~~~~~~~~~~~~~~ 261 (296)
T TIGR00433 193 ALALANLPPESVPINFLVKI-KG----TPL----ADNK-ELSADDALKTIALARIIMPK-AEIRLAGGREVNMRELQQAM 261 (296)
T ss_pred HHHHHhCCCCEEEeeeeEEc-CC----Ccc----CCCC-CCCHHHHHHHHHHHHHHCCc-ceEEEeCCcchhhhhhHHHH
Confidence 99999999998865533211 11 011 1111 11122456777888888863 3333333322 22222 23
Q ss_pred HHHhCCCEEEEchhhhhcCCChH
Q 012517 412 KIRAGATLVQLYTAFAYGGPALI 434 (462)
Q Consensus 412 ~i~aGAd~Vqv~Tali~~GP~~i 434 (462)
.+.+||+.+.++-=+.+.|-...
T Consensus 262 ~l~~G~n~i~~g~~~~~~g~~~~ 284 (296)
T TIGR00433 262 CFMAGANSIFVGDYLTTTGNPEE 284 (296)
T ss_pred HHHhcCceEEEcCcccCCCCCCc
Confidence 68999999999888888876554
No 494
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=85.62 E-value=8.3 Score=37.38 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCC
Q 012517 292 KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGL 371 (462)
Q Consensus 292 ~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGl 371 (462)
+.+.++.+.+++.+++ .+.|++|-= -.+.+.+.|+|||++.....
T Consensus 54 ~~~~~~a~~l~~l~~~------~gv~liINd-----------~~dlA~~~~adGVHLg~~d~------------------ 98 (221)
T PRK06512 54 ATFQKQAEKLVPVIQE------AGAAALIAG-----------DSRIAGRVKADGLHIEGNLA------------------ 98 (221)
T ss_pred HHHHHHHHHHHHHHHH------hCCEEEEeC-----------HHHHHHHhCCCEEEECcccc------------------
Confidence 3455666666665543 257887641 14567788999999863310
Q ss_pred CCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhCCCEEEEchh
Q 012517 372 SGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTA 425 (462)
Q Consensus 372 SG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aGAd~Vqv~Ta 425 (462)
-+.++++..+ .--|||+.-..+.+++.+..+.|||.|.++--
T Consensus 99 -----------~~~~~r~~~~-~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 99 -----------ALAEAIEKHA-PKMIVGFGNLRDRHGAMEIGELRPDYLFFGKL 140 (221)
T ss_pred -----------CHHHHHHhcC-CCCEEEecCCCCHHHHHHhhhcCCCEEEECCC
Confidence 1245565554 23478877778999999988999999999864
No 495
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=85.62 E-value=7.9 Score=40.13 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCC
Q 012517 295 KDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGK 374 (462)
Q Consensus 295 ~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~ 374 (462)
.+.++++++.. +.+..+++--...++.++...+++.+.+.++..|- .
T Consensus 150 ~~~v~avre~~-------G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE--------------------------e 196 (361)
T cd03322 150 PKLFEAVREKF-------GFEFHLLHDVHHRLTPNQAARFGKDVEPYRLFWME--------------------------D 196 (361)
T ss_pred HHHHHHHHhcc-------CCCceEEEECCCCCCHHHHHHHHHHhhhcCCCEEE--------------------------C
Confidence 35566666543 34677887776667777888888888887766541 1
Q ss_pred cCccchHHHHHHHHHhcCCCccEEEecCCCCHHHHHHHHHhC-CCEEEEchhh
Q 012517 375 PLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAF 426 (462)
Q Consensus 375 ~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~dA~e~i~aG-Ad~Vqv~Tal 426 (462)
|+.+..++..+++++.+ .+||.+.=-+.+.+|+.+.++.| +|.+|+--..
T Consensus 197 P~~~~d~~~~~~L~~~~--~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~ 247 (361)
T cd03322 197 PTPAENQEAFRLIRQHT--ATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSH 247 (361)
T ss_pred CCCcccHHHHHHHHhcC--CCCEEeccCCcCHHHHHHHHHhCCCCEEecCccc
Confidence 22233456677888887 68888777788899999999887 7888877655
No 496
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=85.50 E-value=12 Score=38.51 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=69.5
Q ss_pred CCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCC-CccEEEecCC
Q 012517 325 DLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRG-KIPLIGCGGI 403 (462)
Q Consensus 325 dl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~-~ipIIg~GGI 403 (462)
.++.++..++++.+.++|+|.|-++.... +..... -+|.+..+ ..+.++++++.++. ++-++..-|+
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~g-----l~g~s~------~~G~~~~~-~~e~i~~~~~~~~~~~~~~ll~pg~ 87 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDG-----LGGSSF------NYGFSAHT-DLEYIEAAADVVKRAKVAVLLLPGI 87 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCC-----CCCccc------cCCCCCCC-hHHHHHHHHHhCCCCEEEEEeccCc
Confidence 35667999999999999999998873210 000000 01222222 45777778776642 3334555788
Q ss_pred CCHHHHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHHHHHHcCCC
Q 012517 404 SSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFK 451 (462)
Q Consensus 404 ~s~~dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~~l~~~G~~ 451 (462)
.+.+|...+.++|++.|.+++..-. -+ ...+..++.++.|+.
T Consensus 88 ~~~~dl~~a~~~gvd~iri~~~~~e--~d----~~~~~i~~ak~~G~~ 129 (333)
T TIGR03217 88 GTVHDLKAAYDAGARTVRVATHCTE--AD----VSEQHIGMARELGMD 129 (333)
T ss_pred cCHHHHHHHHHCCCCEEEEEeccch--HH----HHHHHHHHHHHcCCe
Confidence 8999999999999999999986521 12 223444556666753
No 497
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=85.43 E-value=40 Score=33.75 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=89.1
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHccc-CcEEEEeccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEE
Q 012517 241 ILGVNIGKNKTSEDAAADYVQGVHTLSQY-ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLL 319 (462)
Q Consensus 241 ~lgvnig~nk~t~~~~~dy~~~~~~l~~~-aD~leiNvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~ 319 (462)
.+.+-+...+ +.+..+.+.+.++.+... +|++.|..+ |.. + .+..-..+...+.+. ...+++
T Consensus 12 ~~s~E~~PPk-~~~~~~~l~~~~~~l~~~~pd~vsVTd~-~~~---~---~~~~s~~~a~~l~~~---------~g~~~i 74 (287)
T PF02219_consen 12 VVSFELFPPK-GADGEEKLLEAAERLKDLGPDFVSVTDN-PGG---S---SRMMSLLAAAKLLKE---------TGIEPI 74 (287)
T ss_dssp EEEEEE---S-SHHHHHHHHHHHHHHHTT--SEEEE----GCG---T---THHHHHHHHHHHHHH---------TT--EE
T ss_pred EEEEEEeCCC-CchHHHHHHHHHHHhcCCCCCEEEeecC-CCC---c---ccCCcHHHHHHHHHH---------hCCceE
Confidence 3555553322 334445677777777764 799877642 221 1 112222333334332 267888
Q ss_pred EEecC-CCChhhHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcC--ccchHHHHHHHHHhcCCCcc
Q 012517 320 VKIAP-DLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPL--LSLSNNILKEMYLLTRGKIP 396 (462)
Q Consensus 320 vKisp-dl~~~~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l--~~~al~~v~~i~~~~~~~ip 396 (462)
+=++. |.+..++......+.+.|++.|.+.-...... |....++. ...++++++.+++..+..+
T Consensus 75 ~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~------------g~~~~~~~~~~~~~~~Li~~i~~~~~~~~- 141 (287)
T PF02219_consen 75 PHLTCRDRNREALQSDLLGAHALGIRNILALTGDPPKG------------GDHFAKPVFDFDYALDLIRLIRQEYGDDF- 141 (287)
T ss_dssp EEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-TSTT------------SSS----TTS-SSHHHHHHHHHHHHGGGS-
T ss_pred EeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCCCCC------------CccccCCCchhHHHHHHHHHHHHhcCccc-
Confidence 88875 45566888888889999999998764421111 11011111 2347899999886543222
Q ss_pred EEEecC-------CCCHH----HHHHHHHhCCCEEEEchhhhhcCCChHHHHHHHHHH
Q 012517 397 LIGCGG-------ISSGE----DAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443 (462)
Q Consensus 397 IIg~GG-------I~s~~----dA~e~i~aGAd~Vqv~Tali~~GP~~i~~i~~~L~~ 443 (462)
-|++.| ..+.+ -..+++++||+.++ |-++| +++.+.++.+.+++
T Consensus 142 ~i~va~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~i--TQ~~f-d~~~~~~~~~~~~~ 196 (287)
T PF02219_consen 142 SIGVAGYPEGHPEAPDFEAELKRLKKKIDAGADFII--TQPFF-DAEAFERFLDRLRE 196 (287)
T ss_dssp EEEEEE-TTHHTTCSSHHHHHHHHHHHHHTTESEEE--EEE-S-SHHHHHHHHHHHHH
T ss_pred ccccccCCCCCccccCHHHHHHHHHHHHHCCCCEEe--ccccC-CHHHHHHHHHHHHH
Confidence 234443 33333 35577789999754 88877 57777776665543
No 498
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=85.38 E-value=38 Score=35.44 Aligned_cols=143 Identities=18% Similarity=0.187 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHHcccCcEEEE-eccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecCCCChh
Q 012517 251 TSEDAAADYVQGVHTLSQYADYLVI-NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKE 329 (462)
Q Consensus 251 ~t~~~~~dy~~~~~~l~~~aD~lei-NvSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKispdl~~~ 329 (462)
.|++ ++++..+.++ +|.+.. ....|...+ +. ...+.+.+-+++.++..+... ....+..++-=+-.... .
T Consensus 120 ltpe---~~i~~q~~ig--sDI~m~LD~~~~~~~~-~~-~~~~av~rT~rW~~r~~~~~~-~~~~~~~lfgiVqGg~~-~ 190 (368)
T TIGR00430 120 LTPE---KSMEIQYALG--SDIIMAFDECTPYPAD-RD-YAEKSTERTLRWAERCLEAHD-RRGNKQALFGIVQGGTY-E 190 (368)
T ss_pred EcHH---HHHHHHHHhC--CCEEEECCcCCCCCCC-HH-HHHHHHHHHHHHHHHHHHHHh-cCCCCeeEEEEeCCCCC-H
Confidence 3666 7888888888 786543 322222111 11 111334444444443332110 00112234444444333 3
Q ss_pred hHHH-HHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHhcCCCccEEEecCCCCHHH
Q 012517 330 DLED-IAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGED 408 (462)
Q Consensus 330 ~~~~-ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~~~ipIIg~GGI~s~~d 408 (462)
++.. -++.+.+.+++|+.+. |++..--++...++|..+...++.+.|.... ||.+++|
T Consensus 191 dLR~~sa~~l~~~~~~G~aIG--------------------Gl~~ge~~~~~~~iv~~~~~~lp~~kPryl~-Gvg~P~~ 249 (368)
T TIGR00430 191 DLRSQSAEGLIELDFPGYAIG--------------------GLSVGEPKEDMLRILEHTAPLLPKDKPRYLM-GVGTPED 249 (368)
T ss_pred HHHHHHHHHHHHCCCCeeEeC--------------------CccCCCCHHHHHHHHHHHHhhCCcccceeec-CCCCHHH
Confidence 4444 4777778888887553 3332111334567788888888888887764 4889999
Q ss_pred HHHHHHhCCCEEEEc
Q 012517 409 AYRKIRAGATLVQLY 423 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~ 423 (462)
..+.+..|+|+.-..
T Consensus 250 i~~~v~~GvD~FD~~ 264 (368)
T TIGR00430 250 LLNAIRRGIDMFDCV 264 (368)
T ss_pred HHHHHHcCCCEEEec
Confidence 999999999986543
No 499
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=85.37 E-value=3.2 Score=42.82 Aligned_cols=74 Identities=24% Similarity=0.113 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCccCCCCCCCCCcccccCCCCCCcCccchHHHHHHHHHh-cCCCccEEEecCCCCHHH
Q 012517 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLL-TRGKIPLIGCGGISSGED 408 (462)
Q Consensus 330 ~~~~ia~~~~~~GvdgIivsNTt~~r~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~-~~~~ipIIg~GGI~s~~d 408 (462)
+..++|+..++.|+++|.|- |-. ...+| +.+.++++++. + ++||.--==|-++.+
T Consensus 140 dp~~iA~~Ye~~GA~aISVL-Td~------------~~F~G---------s~e~L~~vr~~~v--~lPvLrKDFIID~yQ 195 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVL-TDE------------KYFQG---------SFENLEAIRNAGV--KCPLLCKEFIVDAWQ 195 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEe-cCc------------CcCCC---------CHHHHHHHHHcCC--CCCEeeccccCCHHH
Confidence 67899999999999999763 210 01233 67889999997 8 799999988999999
Q ss_pred HHHHHHhCCCEEEEchhhh
Q 012517 409 AYRKIRAGATLVQLYTAFA 427 (462)
Q Consensus 409 A~e~i~aGAd~Vqv~Tali 427 (462)
+++...+|||+|-+--+++
T Consensus 196 I~eAr~~GADAVLLIaaiL 214 (338)
T PLN02460 196 IYYARSKGADAILLIAAVL 214 (338)
T ss_pred HHHHHHcCCCcHHHHHHhC
Confidence 9999999999999888876
No 500
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=85.23 E-value=41 Score=35.00 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=73.5
Q ss_pred CcEEEEe--ccCCCCCCcccccCchHHHHHHHHHHHHHHhhccCCCCCCCEEEEecC---CCC--------hhhHHHHHH
Q 012517 270 ADYLVIN--VSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAP---DLS--------KEDLEDIAA 336 (462)
Q Consensus 270 aD~leiN--vSsPnt~glr~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~Pv~vKisp---dl~--------~~~~~~ia~ 336 (462)
||++-++ +.|++ ..+.+++ +.++.+++++. ..|+++=+-| .++ .+-+..-+.
T Consensus 160 AdAV~~tvy~Gs~~--------E~~ml~~-l~~i~~ea~~~------GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaR 224 (348)
T PRK09250 160 AVAVGATIYFGSEE--------SRRQIEE-ISEAFEEAHEL------GLATVLWSYLRNSAFKKDGDYHTAADLTGQANH 224 (348)
T ss_pred CCEEEEEEecCCHH--------HHHHHHH-HHHHHHHHHHh------CCCEEEEecccCcccCCcccccccHHHHHHHHH
Confidence 8887664 44322 2233444 33344444433 6888873322 121 124566677
Q ss_pred HHHHcCCcEEEEecCCccCC-CCC--CCCCcccccCCCCCCcCccchHHHHHHHHHhc-CCCccEEEecCCCC-HH----
Q 012517 337 VAVALRLDGLIISNTTISRP-DPV--SKNPVAKETGGLSGKPLLSLSNNILKEMYLLT-RGKIPLIGCGGISS-GE---- 407 (462)
Q Consensus 337 ~~~~~GvdgIivsNTt~~r~-~~~--~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~-~~~ipIIg~GGI~s-~~---- 407 (462)
.+.+.|+|-|-+--++-... ..+ .... ...+-.+ .+ ....+.++.+-+.+ .+.+||+..||=.. .+
T Consensus 225 iaaELGADIVKv~yp~~~~~f~~v~~~~~~-~~~~~~~---~~-~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~ 299 (348)
T PRK09250 225 LAATIGADIIKQKLPTNNGGYKAINFGKTD-DRVYSKL---TS-DHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLD 299 (348)
T ss_pred HHHHHcCCEEEecCCCChhhHHHhhccccc-ccccccc---cc-cchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHH
Confidence 78899999887654431000 000 0000 0011111 11 11234455555554 44689999999774 33
Q ss_pred HHHHH---HHhCCCEEEEchhhhh
Q 012517 408 DAYRK---IRAGATLVQLYTAFAY 428 (462)
Q Consensus 408 dA~e~---i~aGAd~Vqv~Tali~ 428 (462)
.+++. +++||..|.+++=+..
T Consensus 300 ~v~~a~~~i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 300 AVRTAVINKRAGGMGLIIGRKAFQ 323 (348)
T ss_pred HHHHHHHhhhcCCcchhhchhhhc
Confidence 45566 7789999999998844
Done!