RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012517
(462 letters)
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial;
triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein,
membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A
{Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A*
3sfk_A*
Length = 415
Score = 568 bits (1466), Expect = 0.0
Identities = 141/428 (32%), Positives = 210/428 (49%), Gaps = 34/428 (7%)
Query: 47 HFSKRGRLLTGATTLGLVIATGAYVSTVDEATFCGWLFSATKLVNPFFALLDAEVAHTLA 106
H G + G+ + TG ++ F + +D E+ H L
Sbjct: 8 HHHSSGLVPRGSHMASM---TGGQQGRDPFESYNPEFFLYDIFLKFCLKYIDGEICHDLF 64
Query: 107 VSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAAGFDKNAEAVEGLLGLGFGFVEVG 166
+ +P + D + F NP G+AAGFDKN ++ +L LGF F+E+G
Sbjct: 65 LLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSILKLGFSFIEIG 124
Query: 167 SVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSS 226
++TP Q GN KPRIFR + +IIN CGFN+ G V + L +++ D
Sbjct: 125 TITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQEED-------- 176
Query: 227 PNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLR 286
I+GV+IGKNK + + D ++ + +YADY+ INVSSPNTPGLR
Sbjct: 177 --------KLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLR 228
Query: 287 MLQGRKQLKDLVKKVQAARDEMQWGEEGP------------PPLLVKIAPDLSKEDLEDI 334
Q +LK+++ V+ D ++ P + VK+APDL++E ++I
Sbjct: 229 DNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEI 288
Query: 335 AAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGK 394
A V + +DG+IISNTT D + + GG+SG L +S + EMY T +
Sbjct: 289 ADVLLETNIDGMIISNTTTQIND-IKSF--ENKKGGVSGAKLKDISTKFICEMYNYTNKQ 345
Query: 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSII 454
IP+I GGI SG DA KI AGA++ QLY+ + G QIK EL L + G+ ++
Sbjct: 346 IPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLK 405
Query: 455 EAVGADYR 462
EA+G +
Sbjct: 406 EAIGRKHS 413
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase;
HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A*
2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A*
3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A*
2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Length = 367
Score = 561 bits (1447), Expect = 0.0
Identities = 194/381 (50%), Positives = 252/381 (66%), Gaps = 20/381 (5%)
Query: 82 WLFSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGL 141
F A L+ LLD E AH LAV + G +PR + D +L + V G KF NP+G+
Sbjct: 6 ERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGI 65
Query: 142 AAGFDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGI 201
AAGFDK+ EAV+GL +GFGFVE+GSVTP PQEGNP+PR+FRL ++ A+INR GFNS G+
Sbjct: 66 AAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGL 125
Query: 202 VAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQ 261
V RL A+ K+ A LGVN+GKNKTS DAA DY +
Sbjct: 126 SVVEHRLRARQQKQ-----------------AKLTEDGLPLGVNLGKNKTSVDAAEDYAE 168
Query: 262 GVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVK 321
GV L ADYLV+NVSSPNT GLR LQG+ +L+ L+ KV RD ++ P +LVK
Sbjct: 169 GVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLR--RVHRPAVLVK 226
Query: 322 IAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSN 381
IAPDL+ +D EDIA+V L +DGLI++NTT+SRP + + ETGGLSGKPL LS
Sbjct: 227 IAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPA-GLQGALRSETGGLSGKPLRDLST 285
Query: 382 NILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441
++EMY LT+G++P+IG GG+SSG+DA KIRAGA+LVQLYTA + GP ++ ++K EL
Sbjct: 286 QTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKREL 345
Query: 442 AECLERDGFKSIIEAVGADYR 462
L+ GF + +A+GAD+R
Sbjct: 346 EALLKEQGFGGVTDAIGADHR 366
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri,
dihydroorotate; alpha-beta barrel, TIM barrel,
oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium
falciparum} SCOP: c.1.4.1
Length = 443
Score = 549 bits (1417), Expect = 0.0
Identities = 139/455 (30%), Positives = 206/455 (45%), Gaps = 61/455 (13%)
Query: 50 KRGRLLTGATTLGLVIATGAYVSTVDEATFCGWLFSATKLVNPFFALLDAEVAHTLAVSA 109
+ T G + Y ++ F + +D E+ H L +
Sbjct: 6 HHHHHGMASMTGGQQMGRDLYDDDDKFESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLL 65
Query: 110 AARGWVPREKRPDPAILGLEVWGRKFSNPLGLAAGFDKNAEAVEGLLGLGFGFVEVGSVT 169
+P + D + F NP G+AAGFDKN ++ +L LGF F+E+G++T
Sbjct: 66 GKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSILKLGFSFIEIGTIT 125
Query: 170 PVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPND 229
P Q GN KPRIFR + +IIN CGFN+ G V + L ++
Sbjct: 126 PRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQ-------------- 171
Query: 230 EVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQ 289
+ I+GV+IGKNK + + D ++ + +YADY+ INVSSPNTPGLR Q
Sbjct: 172 --EEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQ 229
Query: 290 GRKQLKDLVKKVQAARDEMQWGEEGP---------------------------------- 315
+LK+++ V+ D ++
Sbjct: 230 EAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFL 289
Query: 316 --------PPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKE 367
P + VK+APDL++E ++IA V + +DG+IISNTT D S +
Sbjct: 290 WFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSF---ENK 346
Query: 368 TGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427
GG+SG L +S + EMY T +IP+I GGI SG DA KI AGA++ QLY+
Sbjct: 347 KGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLV 406
Query: 428 YGGPALIPQIKAELAECLERDGFKSIIEAVGADYR 462
+ G QIK EL L + G+ ++ EA+G +
Sbjct: 407 FNGMKSAVQIKRELNHLLYQRGYYNLKEAIGRKHS 441
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN
binding domain, orotate complex, oxidoreductase; HET:
MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Length = 336
Score = 502 bits (1295), Expect = e-179
Identities = 135/359 (37%), Positives = 188/359 (52%), Gaps = 31/359 (8%)
Query: 88 KLVNPFFALLDAEVAHTLAVSA---AARGWVPREKRPDPAILGLEVWGRKFSNPLGLAAG 144
V LD E AH R + G F NPLGLAAG
Sbjct: 4 PFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPLGLAAG 63
Query: 145 FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAV 204
DK+ E ++ L +GFG +E+G+VTP PQ GN KPR+FRL +INR GFN+ G+ +
Sbjct: 64 LDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNL 123
Query: 205 AKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTS--EDAAADYVQG 262
+ + H G+LG+NIGKNK + E DY+
Sbjct: 124 VENVKKAH-------------------------YDGVLGINIGKNKDTPVEQGKDDYLIC 158
Query: 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322
+ + YA Y+ IN+SSPNTPGLR LQ + L DL+ ++ ++++Q P+ VKI
Sbjct: 159 MEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI 218
Query: 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNN 382
APDLS+E+L +A V +DG+I +NTT+ R V +TGGLSG+PL S
Sbjct: 219 APDLSEEELIQVADSLVRHNIDGVIATNTTLDRSL-VQGMKNCDQTGGLSGRPLQLKSTE 277
Query: 383 ILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441
I++ + L G++P+IG GGI S A KI AGA+LVQ+Y+ F + GP LI +I +
Sbjct: 278 IIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI 336
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET:
FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Length = 354
Score = 347 bits (893), Expect = e-117
Identities = 73/383 (19%), Positives = 130/383 (33%), Gaps = 55/383 (14%)
Query: 97 LDAEVAHTLAVSA-------AARGWVPREKRPDPAILGLEVWGRKFSNPLGLAAG-FDKN 148
+ + H S A ++ L + + F+NP AAG
Sbjct: 1 MGSSHHHHHHSSGLVPAGSHMASMTGGQQMGRGSMSLQVNLLNNTFANPFMNAAGVMCTT 60
Query: 149 AEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRL 208
E + + G + S TP +EGNP PR L IN G + G
Sbjct: 61 TEELVAMTESASGSLVSKSCTPALREGNPTPRYQAL--PLGSINSMGLPNNGFDFYLAYA 118
Query: 209 GAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQ 268
QH G L +++ + + + ++
Sbjct: 119 AEQH-----------------------DYGKKPLFLSMSGL-SMRENVEMCKRLAAVATE 154
Query: 269 YADYLVINVSSPNTPGLRML-QGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLS 327
L +N+S PN PG + ++ + V VK+ P
Sbjct: 155 KGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYP---------HSFGVKMPPYFD 205
Query: 328 KEDLEDIAAVAVAL-RLDGLIISNTT-------ISRPDPVSKNPVAKETGGLSGKPLLSL 379
+ A + ++ + N+ V K + GGL G+ +L
Sbjct: 206 FAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKP--KQGFGGLGGRYVLPT 263
Query: 380 SNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKA 439
+ + Y G + GCGG+ +GEDA+ + AGA++VQ+ TA GP++ ++ +
Sbjct: 264 ALANINAFYRRCPG-KLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTS 322
Query: 440 ELAECLERDGFKSIIEAVGADYR 462
EL + + ++++ E G
Sbjct: 323 ELLGVMAKKRYQTLDEFRGKVRT 345
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine
biosynthesis, fumarate reductase, energy metabolism,
redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A
{Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A*
2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Length = 314
Score = 330 bits (848), Expect = e-111
Identities = 82/342 (23%), Positives = 132/342 (38%), Gaps = 44/342 (12%)
Query: 126 LGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRL 184
L L + F+NP AAG E + + G + S T P++GNP+PR
Sbjct: 4 LKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAF 63
Query: 185 RQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGV 244
IN G + G K H K L +
Sbjct: 64 --PLGSINSMGLPNLGFDFYLKYASDLHDYSKK-----------------------PLFL 98
Query: 245 NIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRML-QGRKQLKDLVKKVQA 303
+I + E+ A + + L +N+S PN PG + + ++ +++V
Sbjct: 99 SISGL-SVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSL 157
Query: 304 ARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRP---DPVS 360
A P VK+ P + AAV L + ++ D S
Sbjct: 158 AYG---------LPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAES 208
Query: 361 KNPV---AKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGA 417
++ V + GGL GK +L + + Y + GCGG+ SGEDA+ I AGA
Sbjct: 209 ESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPD-KLVFGCGGVYSGEDAFLHILAGA 267
Query: 418 TLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVGA 459
++VQ+ TA GP + +++ EL E + R G++++ E G
Sbjct: 268 SMVQVGTALQEEGPGIFTRLEDELLEIMARKGYRTLEEFRGR 309
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel,
flavoprotein, mutant enzyme, oxidoreductase; HET: FMN;
1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A*
1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A*
1jrc_A* 1jqx_A*
Length = 311
Score = 323 bits (830), Expect = e-108
Identities = 79/346 (22%), Positives = 131/346 (37%), Gaps = 50/346 (14%)
Query: 125 ILGLEVWGRKFSNPLGLAAGFD-KNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFR 183
+L KF+NP A+G E +E L G S T +EGNP PR
Sbjct: 1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVD 60
Query: 184 LRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILG 243
L E IN G + G + + + G +
Sbjct: 61 L--ELGSINSMGLPNLGFDYYLDYVLKNQKENAQE---------------------GPIF 97
Query: 244 VNIGKNKTSEDAAADYVQGVHTLSQ--YADYLVINVSSPNTPGLRMLQG-RKQLKDLVKK 300
+I AA+ + + + + ++ +N+S PN PG L + + L+K+
Sbjct: 98 FSIAGMS-----AAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKE 152
Query: 301 VQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTT-------I 353
V PL VK+ P + +A + L + N+
Sbjct: 153 VFTFFT---------KPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDP 203
Query: 354 SRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKI 413
V K GG+ G + + ++ Y + +I +IG GGI +G+DA+ +
Sbjct: 204 EAESVVIKP--KDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHL 261
Query: 414 RAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVGA 459
GAT++Q+ TA GPA+ +I EL E + + G++SI + G
Sbjct: 262 LCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGK 307
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 260 bits (667), Expect = 7e-84
Identities = 67/362 (18%), Positives = 116/362 (32%), Gaps = 47/362 (12%)
Query: 109 AAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGS 167
A+ + R + F N L AAG + E + + G +
Sbjct: 21 MASMTGGQQMGRGSMVSTHTTIGSFDFDNCLMNAAGVYCMTREELAAIDHSEAGSFVTXT 80
Query: 168 VTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSP 227
T + GNP+PR + IN G + GI + +
Sbjct: 81 GTLEERAGNPQPRYADT--KLGSINSMGLPNLGINYYLDYVTELQKQ------------- 125
Query: 228 NDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRM 287
+G + V+ S+Y + +N+S PN PG
Sbjct: 126 --------PDSKNHFLSLVGMSPEETHTILXMVEA----SKYQGLVELNLSCPNVPGXPQ 173
Query: 288 LQGRKQL-KDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGL 346
+ + ++ +V PL +K+ P D+ A L
Sbjct: 174 IAYDFETTDQILSEVFTYFT---------KPLGIKLPPYF---DIVHFDQAAAIFNXYPL 221
Query: 347 IISNTTISRPDPVSKNP------VAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGC 400
N S + + GG+ G + + + Y I +IG
Sbjct: 222 TFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGT 281
Query: 401 GGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVGAD 460
GG+ +G DA+ I GA++VQ+ TA GP + +I EL + G++++ + G
Sbjct: 282 GGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMTEKGYETLEDFRGKL 341
Query: 461 YR 462
Sbjct: 342 NA 343
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 125 bits (317), Expect = 6e-33
Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 49/341 (14%)
Query: 126 LGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRL 184
L +++ G NP+ A+G F E + G + V + T P+ GNP PR+
Sbjct: 7 LSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAET 66
Query: 185 RQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGV 244
++N G + G+ + + P I
Sbjct: 67 --ASGMLNAIGLQNPGLEVIMTEKLP-------------------WLNENFPELPII--A 103
Query: 245 NIGKNKTSEDAAADYVQGVHTLSQ--YADYLVINVSSPNTPGLRMLQGR--KQLKDLVKK 300
N+ + ADYV + + +N+S PN G + LVK
Sbjct: 104 NV-----AGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKA 158
Query: 301 VQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS-RPDPV 359
+A PL VK++P+++ D+ IA A DGL + NT + R D
Sbjct: 159 CKAVSKV---------PLYVKLSPNVT--DIVPIAKAVEAAGADGLTMINTLMGVRFDLK 207
Query: 360 SKNPV-AKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGAT 418
++ P+ A TGGLSG + ++ ++ ++ IP+IG GG+++ +D AGA+
Sbjct: 208 TRQPILANITGGLSGPAIKPVALKLIHQVA--QDVDIPIIGMGGVANAQDVLEMYMAGAS 265
Query: 419 LVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVGA 459
V + TA + P + P+I +L E +++ +S+ +
Sbjct: 266 AVAVGTA-NFADPFVCPKIIDKLPELMDQYRIESLESLIQE 305
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 55.2 bits (133), Expect = 3e-08
Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 19/199 (9%)
Query: 270 ADYLVINVSSPNTPGLR-MLQGRKQLKDLVKKVQAARDEMQWGEEGPP-PLLVKIAPDLS 327
AD L +N+S P+ G R M Q +LV+ + +W + P K+ P+++
Sbjct: 662 ADALELNLSCPHGMGERGMGLACGQDPELVRNI------CRWVRQAVQIPFFAKLTPNVT 715
Query: 328 KEDLEDIAAVAVALRLDGLIISNTTIS----RPDPVSKNPVAKET----GGLSGKPLLSL 379
D+ IA A DG+ +NT + D V GG+SG + +
Sbjct: 716 --DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPI 773
Query: 380 SNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKA 439
+ + + G P++ GGI S E + + +GA+++Q+ +A +I
Sbjct: 774 ALRAVTTIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCT 832
Query: 440 ELAECLERDGFKSIIEAVG 458
L L + + G
Sbjct: 833 GLKALLYLKSIEELQGWDG 851
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 2e-07
Identities = 95/526 (18%), Positives = 156/526 (29%), Gaps = 175/526 (33%)
Query: 55 LTGATTLGLVIATGA--YVSTVDEATFCGWLFSATKLVNPFFALLDAEVAHTLA------ 106
+ +T L ++ G+ +V V A+F F A++L F +L E A
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASF----FIASQLQEQFNKIL-PEPTEGFAADDEPT 55
Query: 107 --VSAAAR--GWVPREKRPDPA-----ILGLEVWG--RKFSNPLG------LAAGFDKNA 149
+ G+V P +L L + + L LAA +
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY---LEGNDIHALAAKLLQEN 112
Query: 150 EAVEGLLGLGF-GFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRL 208
+ ++ + P + +FR EG +VA+
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA---------QLVAI---F 160
Query: 209 GAQHGK--------RKLDETSRT----------------SSSPNDEVKAGGKAGPGILGV 244
G Q G R L +T + D K + G+
Sbjct: 161 GGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ------GL 213
Query: 245 NIGK--NKTSEDAAADYVQGV------HTLSQYADYLVINVSSPNTPG-LR-MLQGR-KQ 293
NI + S DY+ + + Q A Y+V TPG LR L+G
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 294 LKDLVKKV------------QAARDEMQW----------------------------GEE 313
+ LV V + R + E
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 314 GPPPLL-VKIAPDLSKEDLED-IAAVAVALRLDGLI-IS--NTTISRPDPVSKNPVAKET 368
P P+L + +L++E ++D + L + IS N N V
Sbjct: 334 VPSPMLSIS---NLTQEQVQDYVNKTNSHLPAGKQVEISLVNG----AK----NLV---- 378
Query: 369 GGLSGKP--LLSLSNNILKEMYL--LTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYT 424
+SG P L L+ + K L + +IP S RK++ + + +
Sbjct: 379 --VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF------SE-----RKLKFSNRFLPVAS 425
Query: 425 AF--AYGGPALIPQIKAELAEC-LERDGFKSIIEAV-----GADYR 462
F PA I +L + + + K I V G+D R
Sbjct: 426 PFHSHLLVPA-SDLINKDLVKNNVSFNA-KDIQIPVYDTFDGSDLR 469
Score = 46.6 bits (110), Expect = 2e-05
Identities = 47/288 (16%), Positives = 95/288 (32%), Gaps = 95/288 (32%)
Query: 108 SAAARG-WVPREKRPD---PAILGLEVWGRKFSNPLGLAAGFD-KNAEAV-EGLLGLGFG 161
S AA+ W R D G + +NP+ L F + + + E + F
Sbjct: 1639 SKAAQDVW----NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 162 FVEVGSVT--PVPQEGNPK--------------------PRIF--------RLRQEGAII 191
+ G + + +E N P + L+ +G I
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 192 NRCGF--NSEG----IVAVAK--------RLGAQHGKRKLDETSRTSSSPNDEVKAGGKA 237
F +S G + ++A + G + + P DE+ G++
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM------TMQVAVPRDEL---GRS 1805
Query: 238 GPGILGVNIGK-NKTSEDAAADYVQGVHTLSQYADYLV--IN--------VSSPNTPGLR 286
G++ +N G+ + A YV V + + +LV +N V++ + L
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYV--VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD 1863
Query: 287 MLQGRKQLKDL-VKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLED 333
+ L + ++K+ ++++ LS E++E
Sbjct: 1864 TVT--NVLNFIKLQKID----------------IIELQKSLSLEEVEG 1893
Score = 35.0 bits (80), Expect = 0.067
Identities = 36/208 (17%), Positives = 53/208 (25%), Gaps = 82/208 (39%)
Query: 330 DLEDIAAVAVAL--RLDGLIISNTTISRPDPVSKNPVAKET--GGLSGKPL--------- 376
DL + A + R D S D V NPV GG GK +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 377 ------LSLSNNILKE--------MY----------------LLT-----------RGKI 395
+ I KE + L +G I
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 396 P---------------LIGCGGISSGEDAYR--KIRAGATLVQLYTAFA-----YGGPAL 433
P L + S E R G T+ YG A+
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDELGRSNYGMIAI 1812
Query: 434 IP-QIKAELAECLERDGFKSIIEAVGAD 460
P ++ A ++ + + ++E VG
Sbjct: 1813 NPGRVAASFSQ----EALQYVVERVGKR 1836
Score = 30.8 bits (69), Expect = 1.2
Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 39/152 (25%)
Query: 44 KIPHFSKR-----GRLL-TGA---TTLGLVIATGAYVSTVDEATFCGWLFSATKLVNPFF 94
+IP FS+R R L + + L LV A+ + + F+A + P +
Sbjct: 406 RIP-FSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNV---SFNAKDIQIPVY 460
Query: 95 A--------LLDAEVAHTLAVSAAARG---WVPREKRPDPA-ILGLEVWGRKFSNPLGLA 142
+L ++ + V R W + IL +G GL
Sbjct: 461 DTFDGSDLRVLSGSISERI-VDCIIRLPVKW-ETTTQFKATHIL---DFGP--GGASGLG 513
Query: 143 AGFDKNAEAVEGLLGLGFGFVEVGSVTPVPQE 174
+N + G G + G++ P +
Sbjct: 514 VLTHRNKD------GTGVRVIVAGTLDINPDD 539
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.002
Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 49/201 (24%)
Query: 211 QHGKRKLD-ETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDA--AADYVQGVHTLS 267
H +D ET D IL V + D D + + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKD-----------ILSVFEDAFVDNFDCKDVQDMPKSILSKE 49
Query: 268 QYADYLVINVSSPNTPGLRML-----QGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322
+ +I + LR+ + + ++ V++V R ++ L+ I
Sbjct: 50 EIDH--IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL--RINYKF-------LMSPI 98
Query: 323 APDLSKEDLEDIAAVAVALRL--DGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLS 380
+ + + + RL D + + +SR P K L + LL L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK---------LR-QALLELR 148
Query: 381 NNILKEMYLLTRGKIPLIGCG 401
+L G ++G G
Sbjct: 149 ----PAKNVLIDG---VLGSG 162
Score = 38.7 bits (89), Expect = 0.004
Identities = 51/357 (14%), Positives = 89/357 (24%), Gaps = 114/357 (31%)
Query: 146 DKNAEA----VEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGI 201
K E VE +L + + F+ ++P+ E + R+ E +R +N
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQ--RDRL-YN--DN 123
Query: 202 VAVAKRLGAQHGKR-KLDETSRT---SSSPNDEVKAGGKAGPGILGVNIGKNKTS--EDA 255
AK + R + R P V G G G KT D
Sbjct: 124 QVFAKY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---------KTWVALDV 170
Query: 256 AADYVQGVHTLSQYADYLV--INVSSPNTPG--LRMLQG-----RKQLKDLVKKVQAARD 306
Y + D+ + +N+ + N+P L MLQ +
Sbjct: 171 CLSY-----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 307 EMQWGEEG----------PPPLLVKIAPDLSKEDLEDIAAVAVALRLDG----LII---- 348
+ + LLV L ++ + L+
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLV----------LLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 349 SNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGED 408
T + + + L+ + SL L +P
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD----CRPQDLPREVLT------- 324
Query: 409 AYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLER---------DGFKSIIEA 456
P + I + + L D +IIE+
Sbjct: 325 --------------------TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 38.7 bits (89), Expect = 0.003
Identities = 27/242 (11%), Positives = 64/242 (26%), Gaps = 21/242 (8%)
Query: 216 KLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYLVI 275
+D + ++ + G + + ++ E YV + V+
Sbjct: 44 IIDPFKVPVTEAVEKAAELTRLGFAAVLLASTDYESFESHMEPYVA---AVKAATPLPVV 100
Query: 276 NVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA 335
P + L+ + + D+ + + L + +E+ ++
Sbjct: 101 LHFPPRPGAGFPVVRGADAL-LLPALLGSGDD-YFVWKSFLETLAAFPGRIPREEWPELL 158
Query: 336 AVAVALRLDGLIISNTTISRPDPVSKNPVAK---ETGGLSGKPLLSL-------SNNILK 385
+ + + P + G ++ L +++
Sbjct: 159 LTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYLHVARAFGFHMVYLYSRNEHVPPEVVR 218
Query: 386 EMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECL 445
L G + SG + +GA V A P ++ LAE
Sbjct: 219 HFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ------PDWRSALAEIA 272
Query: 446 ER 447
R
Sbjct: 273 GR 274
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 37.1 bits (86), Expect = 0.009
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQ-----LYTAFAYGGPALIPQI---KAELAEC 444
K+ ++ GGI D + + GA V L + +I + K +L
Sbjct: 277 DKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLI 336
Query: 445 LERDGFKSIIEAVGADY 461
+ ++I E DY
Sbjct: 337 MCALNCQTIAELRNVDY 353
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 36.5 bits (84), Expect = 0.014
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF---AYGGP----ALIPQIKAELAECL 445
+PL+ GG+ +G D + + GA L+ + A G A I EL L
Sbjct: 255 PHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELRTAL 314
Query: 446 ERDGFKSIIE 455
G ++ E
Sbjct: 315 FAIGARNPKE 324
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 35.2 bits (82), Expect = 0.031
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443
+P+I GG E AGA + + + ++K L +
Sbjct: 75 LPIIASGGAGKMEHFLEAFLAGADKALAASV-FHFREIDMRELKEYLKK 122
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 34.6 bits (80), Expect = 0.056
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426
IP++ GGI G + AGA QL TAF
Sbjct: 208 DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAF 240
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family,
OYE-like FMN-binding domain, TIM B oxidoreductase; HET:
PGE; 1.65A {Staphylococcus aureus}
Length = 419
Score = 34.6 bits (80), Expect = 0.061
Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 18/127 (14%)
Query: 301 VQAARDEMQWGEEGPP--PLLVKIAPDLSKE-----DLEDIAAVAVALRLDGLIISNTTI 353
++A ++ +E P L + P+ ++ +++ + + +D I I
Sbjct: 228 MRAVQEV--IDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWV-MDVSNIQYLAI 284
Query: 354 SRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKI 413
+ ++ G G+P+ + + E G+IPLI GGI+S E A
Sbjct: 285 ASWGRHIYQNTSRTPGDHFGRPVNQI----VYEHL---AGRIPLIASGGINSPESA-LDA 336
Query: 414 RAGATLV 420
A +V
Sbjct: 337 LQHADMV 343
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 34.3 bits (79), Expect = 0.080
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 392 RGKIPLIGCGGISSGEDAYRKIRAGATLV-----QLYTAFAYGGPAL---IPQIKAEL 441
+I GG+ D + I GA+ L G L I I EL
Sbjct: 249 FPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEEL 306
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.13
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 33/60 (55%)
Query: 295 KDLVKKVQAARDEMQWGEEGPPPLLVKI-APDLSKEDLEDIAAVAVALRLDGLIISNTTI 353
K +KK+QA+ +K+ A D +A A+A+ T+
Sbjct: 19 KQALKKLQAS---------------LKLYADD---------SAPALAI--------KATM 46
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 32.9 bits (75), Expect = 0.23
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF---AYGGP----ALIPQIKAELAECL 445
L+G GGI SG DA + I GA + + A G +I EL +
Sbjct: 266 PDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIFELKAAM 325
Query: 446 ERDGFKSIIEAVGADY 461
G K +
Sbjct: 326 MLTGSKDVDALKKTSI 341
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 30.5 bits (70), Expect = 0.87
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 395 IPL-IGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 437
IP +G GGI E A I GA V + TA A P+LI QI
Sbjct: 75 IPFTVG-GGIHDFETASELILRGADKVSINTA-AVENPSLITQI 116
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 30.4 bits (68), Expect = 0.90
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 390 LTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQ 436
L +I G +S A IR GA V + +A I
Sbjct: 177 LHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAIT--RLEHICG 221
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 30.5 bits (70), Expect = 0.98
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 395 IPL-IGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 437
IPL +G GG+ S EDA + + +GA V + +A A P LI ++
Sbjct: 76 IPLTVG-GGVRSLEDARKLLLSGADKVSVNSA-AVRRPELIREL 117
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 30.2 bits (69), Expect = 1.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 437
+P+I GG E GA V + TA A P+LI QI
Sbjct: 80 LPIIASGGAGKMEHFLEAFLRGADKVSINTA-AVENPSLITQI 121
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 30.1 bits (69), Expect = 1.2
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 395 IPL-IGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 437
IP+ +G GG+ S EDA RAGA V + TA A P L+ +
Sbjct: 78 IPVLVG-GGVRSLEDATTLFRAGADKVSVNTA-AVRNPQLVALL 119
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase;
non-canonical TIM-barrel, prenyltransferase, archaeal
lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus
fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Length = 234
Score = 29.7 bits (66), Expect = 1.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 394 KIPLIGCGGISSGEDAYRKIRAGATLV 420
K L GGI S E A +R T++
Sbjct: 190 KARLFYGGGIDSREKAREMLRYADTII 216
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A
{Bacillus subtilis} SCOP: c.1.4.1
Length = 240
Score = 29.3 bits (65), Expect = 2.1
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426
L GGI E A ++ A ++ + A
Sbjct: 183 STLFYGGGIKDAETA-KQYAEHADVIVVGNAV 213
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 28.3 bits (63), Expect = 4.2
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 387 MYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKA 439
G + G S+ E A G T ++ + A A GG +++ +
Sbjct: 121 RACQEIGIDIVPGVNNPSTVEAALE---MGLTTLKFFPAEASGGISMVKSLVG 170
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 28.8 bits (65), Expect = 4.2
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQ-IKAELAECLERD 448
IP+I GGI+ G GA VQ+ T F + + K ++ + RD
Sbjct: 176 NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVESDVHPVYKEKIVKASIRD 231
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function
project, S2F, unknown function; HET: MSE; 1.75A
{Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Length = 112
Score = 27.2 bits (61), Expect = 4.4
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 320 VKIAPDLSKED---LEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPL 376
+ I P L ++D LED+ A A N + R + + K +A T G+ P
Sbjct: 58 IDIDPSLMEDDKEMLEDLIAAAF----------NDAVRRAEELQKEKMASVTAGMPLPPG 107
Query: 377 LSL 379
+
Sbjct: 108 MKF 110
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 28.3 bits (64), Expect = 4.9
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 394 KIPLIGCGGISSGEDAYRKIRA-GATLVQLYTAFAYGGPALIPQIKAELA 442
+IP G I + EDA R + G + + A G P + QIK L
Sbjct: 183 RIPTFVSGDIFTPEDAKRALEESGCDGLLVARG-AIGRPWIFKQIKDFLR 231
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 28.0 bits (63), Expect = 5.9
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 394 KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQ-IKAELAECLERD 448
IP+I GGI+ GE A GA VQ+ T F + K ++ + + D
Sbjct: 162 SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKESNAHPNYKEKILKARDID 217
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 27.6 bits (61), Expect = 6.7
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 389 LLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTA 425
+L +I G + + + R + G + A
Sbjct: 170 VLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGA 206
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A
{Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB:
1etp_A* 1m6z_A*
Length = 190
Score = 27.6 bits (61), Expect = 7.3
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 20/69 (28%)
Query: 268 QYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLS 327
Q YL+ KQL+D+ + G + + LS
Sbjct: 35 QGERYLL-----------------KQLQDIKAG---STPGAPEGVGRKVLEMTGMLDPLS 74
Query: 328 KEDLEDIAA 336
+DLEDIAA
Sbjct: 75 DQDLEDIAA 83
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 27.7 bits (61), Expect = 8.1
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 381 NNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQ 436
L + L+ +I G ++ A I GA V + +A I Q
Sbjct: 168 EPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAIT--RIEHICQ 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.391
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,212,179
Number of extensions: 463233
Number of successful extensions: 1676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1625
Number of HSP's successfully gapped: 74
Length of query: 462
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 365
Effective length of database: 3,993,456
Effective search space: 1457611440
Effective search space used: 1457611440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.7 bits)