RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012517
(462 letters)
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
{Plasmodium falciparum [TaxId: 5833]}
Length = 409
Score = 289 bits (741), Expect = 1e-94
Identities = 136/415 (32%), Positives = 199/415 (47%), Gaps = 61/415 (14%)
Query: 89 LVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAAGFDKN 148
+ +D E+ H L + +P + D + F NP G+AAGFDKN
Sbjct: 14 FLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKN 73
Query: 149 AEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAVAKRL 208
++ +L LGF F+E+G++TP Q GN KPRIFR + +IIN CGFN+ G V + L
Sbjct: 74 GVCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENL 133
Query: 209 GAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQ 268
+++ D I+GV+IGKNK + + D ++ + +
Sbjct: 134 ILFRKRQEED----------------KLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGR 177
Query: 269 YADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGP------------- 315
YADY+ INVSSPNTPGLR Q +LK+++ V+ D ++
Sbjct: 178 YADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVE 237
Query: 316 -----------------------------PPLLVKIAPDLSKEDLEDIAAVAVALRLDGL 346
P + VK+APDL++E ++IA V + +DG+
Sbjct: 238 KKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGM 297
Query: 347 IISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSG 406
IISNTT D S + GG+SG L +S + EMY T +IP+I GGI SG
Sbjct: 298 IISNTTTQINDIKSF---ENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSG 354
Query: 407 EDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVGADY 461
DA KI AGA++ QLY+ + G QIK EL L + G+ ++ EA+G +
Sbjct: 355 LDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIGRKH 409
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 257 bits (657), Expect = 1e-82
Identities = 194/379 (51%), Positives = 253/379 (66%), Gaps = 20/379 (5%)
Query: 84 FSATKLVNPFFALLDAEVAHTLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPLGLAA 143
F A L+ LLD E AH LAV + G +PR + D +L + V G KF NP+G+AA
Sbjct: 8 FYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAA 67
Query: 144 GFDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVA 203
GFDK+ EAV+GL +GFGFVE+GSVTP PQEGNP+PR+FRL ++ A+INR GFNS G+
Sbjct: 68 GFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSV 127
Query: 204 VAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGV 263
V RL A+ K +A LGVN+GKNKTS DAA DY +GV
Sbjct: 128 VEHRLRARQQK-----------------QAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGV 170
Query: 264 HTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIA 323
L ADYLV+NVSSPNT GLR LQG+ +L+ L+ KV RD ++ P +LVKIA
Sbjct: 171 RVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHR--PAVLVKIA 228
Query: 324 PDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNI 383
PDL+ +D EDIA+V L +DGLI++NTT+SRP + + + ETGGLSGKPL LS
Sbjct: 229 PDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGL-QGALRSETGGLSGKPLRDLSTQT 287
Query: 384 LKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 443
++EMY LT+G++P+IG GG+SSG+DA KIRAGA+LVQLYTA + GP ++ ++K EL
Sbjct: 288 IREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEA 347
Query: 444 CLERDGFKSIIEAVGADYR 462
L+ GF + +A+GAD+R
Sbjct: 348 LLKEQGFGGVTDAIGADHR 366
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 336
Score = 229 bits (584), Expect = 4e-72
Identities = 134/359 (37%), Positives = 187/359 (52%), Gaps = 31/359 (8%)
Query: 88 KLVNPFFALLDAEVAHTLAVSAAARGW---VPREKRPDPAILGLEVWGRKFSNPLGLAAG 144
V LD E AH R R + G F NPLGLAAG
Sbjct: 4 PFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPLGLAAG 63
Query: 145 FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRLRQEGAIINRCGFNSEGIVAV 204
DK+ E ++ L +GFG +E+G+VTP PQ GN KPR+FRL +INR GFN+ G+ +
Sbjct: 64 LDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNL 123
Query: 205 AKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSE--DAAADYVQG 262
+ + H G+LG+NIGKNK + DY+
Sbjct: 124 VENVKKAH-------------------------YDGVLGINIGKNKDTPVEQGKDDYLIC 158
Query: 263 VHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKI 322
+ + YA Y+ IN+SSPNTPGLR LQ + L DL+ ++ ++++Q P+ VKI
Sbjct: 159 MEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI 218
Query: 323 APDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNN 382
APDLS+E+L +A V +DG+I +NTT+ R +TGGLSG+PL S
Sbjct: 219 APDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQ-GMKNCDQTGGLSGRPLQLKSTE 277
Query: 383 ILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 441
I++ + L G++P+IG GGI S A KI AGA+LVQ+Y+ F + GP LI +I +
Sbjct: 278 IIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI 336
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 205 bits (522), Expect = 3e-63
Identities = 78/341 (22%), Positives = 120/341 (35%), Gaps = 42/341 (12%)
Query: 126 LGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFRL 184
L + + G +FSNP AAG E + + G + S T P+ GNP+PR F L
Sbjct: 2 LKVNILGHEFSNPFMNAAGVLCTTEEDLRRMTESESGSLIGKSCTLAPRTGNPEPRYFGL 61
Query: 185 RQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGV 244
IN G + G+ H +
Sbjct: 62 --PLGSINSMGLPNLGVDFYLSYAAQTHDYSRKP------------------------LF 95
Query: 245 NIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAA 304
+ E++ + V + L +N+S PN PG D +
Sbjct: 96 LSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVPGKPQ---VGYDFDTTRTYLQK 152
Query: 305 RDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRP------DP 358
E P VK+ P + AAV L I +I +
Sbjct: 153 VSEAYG-----LPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANE 207
Query: 359 VSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGAT 418
+ GGL GK +L + + + + GCGG+ SGE+A+ I AGA+
Sbjct: 208 TVVIKPKQGFGGLGGKYVLPTALANVNAFFRRC-PDKLVFGCGGVYSGEEAFLHILAGAS 266
Query: 419 LVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVGA 459
+VQ+ TA GP + ++ EL E + G+K++ E G
Sbjct: 267 MVQVGTALHDEGPIIFARLNKELQEIMTNKGYKTLDEFRGR 307
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 200 bits (509), Expect = 2e-61
Identities = 75/340 (22%), Positives = 125/340 (36%), Gaps = 40/340 (11%)
Query: 125 ILGLEVWGRKFSNPLGLAAGFD-KNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRIFR 183
+L KF+NP A+G E +E L G S T +EGNP PR
Sbjct: 1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVD 60
Query: 184 LRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILG 243
L E IN G + G + + + G +
Sbjct: 61 L--ELGSINSMGLPNLGFDYYLDYVLKNQKENAQE---------------------GPIF 97
Query: 244 VNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQA 303
+I +E+ A S ++ +N+S PN PG + +K+
Sbjct: 98 FSIAGMSAAENIAMLKK---IQESDFSGITELNLSCPNVPGEPQ---LAYDFEATEKLLK 151
Query: 304 ARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNP 363
PL VK+ P + +A + L + N+ + +
Sbjct: 152 EVFTFF-----TKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAE 206
Query: 364 VAK-----ETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGAT 418
GG+ G + + ++ Y + +I +IG GGI +G+DA+ + GAT
Sbjct: 207 SVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGAT 266
Query: 419 LVQLYTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVG 458
++Q+ TA GPA+ +I EL E + + G++SI + G
Sbjct: 267 MLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 199 bits (506), Expect = 6e-61
Identities = 61/336 (18%), Positives = 112/336 (33%), Gaps = 34/336 (10%)
Query: 126 LGLEVWGRKFSNPLGLAAG-FDKNAEAVEGLLGLGFGFVEVGSVT-PVPQEGNPKPRIFR 183
+ +E+ G KF NP GLA+ ++ + G+GF + + N PRI R
Sbjct: 1 ISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVR 60
Query: 184 LRQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILG 243
G + + I ++++ A + + +
Sbjct: 61 GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPD-----------------N 103
Query: 244 VNIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQA 303
+ I S + + AD L +N+S P+ G R + + +
Sbjct: 104 IVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNIC 163
Query: 304 ARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR-------- 355
P K+ P+ D+ IA A DG+ +NT
Sbjct: 164 RWVRQA----VQIPFFAKLTPN--VTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGT 217
Query: 356 PDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRA 415
P P GG+SG + ++ + + G P++ GGI S E + + +
Sbjct: 218 PWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPG-FPILATGGIDSAESGLQFLHS 276
Query: 416 GATLVQLYTAFAYGGPALIPQIKAELAECLERDGFK 451
GA+++Q+ +A +I L L +
Sbjct: 277 GASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIE 312
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 180 bits (456), Expect = 1e-53
Identities = 72/337 (21%), Positives = 131/337 (38%), Gaps = 41/337 (12%)
Query: 126 LGLEVWGRKFSNPLGLAAGFDKNAEAVEGLLGL-GFGFVEVGSVTPVPQEGNPKPRIFRL 184
L +++ G NP+ A+G E L G + V + T P+ GNP PR+
Sbjct: 7 LSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAET 66
Query: 185 RQEGAIINRCGFNSEGIVAVAKRLGAQHGKRKLDETSRTSSSPNDEVKAGGKAGPGILGV 244
++N G + G+ + + +
Sbjct: 67 AS--GMLNAIGLQNPGLEVIMTEKLPWLNENFPEL------------------------P 100
Query: 245 NIGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAA 304
I SE+A V + + +N+S PN ++ + A
Sbjct: 101 IIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAF--GTDPEVAAALVKA 158
Query: 305 RDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTIS-RPDPVSKNP 363
+ PL VK++P++ D+ IA A DGL + NT + R D ++ P
Sbjct: 159 CKAVS-----KVPLYVKLSPNV--TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQP 211
Query: 364 VA-KETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQL 422
+ TGGLSG + ++ ++ ++ IP+IG GG+++ +D AGA+ V +
Sbjct: 212 ILANITGGLSGPAIKPVALKLIHQVA--QDVDIPIIGMGGVANAQDVLEMYMAGASAVAV 269
Query: 423 YTAFAYGGPALIPQIKAELAECLERDGFKSIIEAVGA 459
TA + P + P+I +L E +++ +S+ +
Sbjct: 270 GTA-NFADPFVCPKIIDKLPELMDQYRIESLESLIQE 305
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 52.2 bits (124), Expect = 4e-08
Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 21/196 (10%)
Query: 270 ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKE 329
AD L +V+ R + L + + ++ P ++ ++ LS+E
Sbjct: 124 ADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPF---------PVMVKEVGHGLSRE 174
Query: 330 DLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYL 389
+ + +A + + V V G P IL+ +
Sbjct: 175 AALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTAR---AILEVREV 231
Query: 390 LTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA-------LIPQIKAELA 442
+PL+ GG+ +G D + + GA L+ + I EL
Sbjct: 232 --LPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELR 289
Query: 443 ECLERDGFKSIIEAVG 458
L G ++ EA G
Sbjct: 290 TALFAIGARNPKEARG 305
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 41.4 bits (96), Expect = 2e-04
Identities = 22/140 (15%), Positives = 36/140 (25%), Gaps = 17/140 (12%)
Query: 333 DIAAVAVALRLDGLIISN---TTISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYL 389
A + I T S+ + +S +S
Sbjct: 173 ASAGKLYEAGAAAVDIGGYGGTNFSKI------ENLRRQRQISFFNSWGISTAASLAEIR 226
Query: 390 LTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAY----GGPA----LIPQIKAEL 441
+I GG+ D + I GA+ + F G I I EL
Sbjct: 227 SEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEEL 286
Query: 442 AECLERDGFKSIIEAVGADY 461
+ G ++I + A
Sbjct: 287 KLIMTVLGARTIADLQKAPL 306
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 36.4 bits (84), Expect = 0.007
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 19/135 (14%)
Query: 295 KDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVAVALRLDGLIISNT--- 351
+DL + + + + VK+ S+ + IAA D ++IS
Sbjct: 556 EDLAQLIYDLKQIN-----PDAKVTVKLV---SRSGIGTIAAGVAKANADIILISGNSGG 607
Query: 352 TISRPDPVSKNPVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYR 411
T + P K GL + LS + +L L R ++ L GG+ +G D
Sbjct: 608 TGASPQTSIKFA------GLPWEMGLSEVHQVLTLNRL--RHRVRLRTDGGLKTGRDIVI 659
Query: 412 KIRAGATLVQLYTAF 426
GA + TA
Sbjct: 660 AAMLGAEEFGIGTAS 674
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 35.7 bits (81), Expect = 0.009
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 381 NNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA-------- 432
L+E+ +G+IP+ GG+ G D ++ + GA V + + A
Sbjct: 266 IMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKK 325
Query: 433 LIPQIKAELAECLERDGFKSI 453
++ ++ E + G +S+
Sbjct: 326 VLQMMRDEFELTMALSGCRSL 346
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 35.7 bits (81), Expect = 0.010
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 393 GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA--------LIPQIKAELAEC 444
K+ + GG+ G D + + GA V L F Y I ++ E+
Sbjct: 305 DKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMS 364
Query: 445 LERDGFKSIIE 455
+ G SI E
Sbjct: 365 MRLLGVTSIAE 375
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 34.1 bits (77), Expect = 0.022
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 395 IPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427
+I G + + + R + G + A
Sbjct: 176 AKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT 208
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 33.7 bits (76), Expect = 0.027
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 379 LSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFA 427
+ + + L + I +I G I S E+A + G + + A
Sbjct: 168 EAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT 216
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 34.1 bits (77), Expect = 0.031
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 392 RGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA--------LIPQIKAELAE 443
+GKI + GG+ +G D + + GA + L +G ++ + AEL
Sbjct: 270 KGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHR 329
Query: 444 CLERDGFKSI 453
C+ G +S+
Sbjct: 330 CMTLSGCQSV 339
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 32.8 bits (74), Expect = 0.059
Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 4/108 (3%)
Query: 322 IAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSKNPVAKETGGLSGKPLLSLSN 381
+ +E + + + + I + S V ++ L +
Sbjct: 112 EIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGT 171
Query: 382 NILKEMYLLTR---GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAF 426
E+ + K L GGI S E A R++ A + +
Sbjct: 172 YGNPELVAEVKKVLDKARLFYGGGIDSREKA-REMLRYADTIIVGNVI 218
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 32.3 bits (73), Expect = 0.081
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 380 SNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLV 420
+ ++ + +G+I + GGI E A I AGA +
Sbjct: 161 TLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI 201
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 32.3 bits (73), Expect = 0.096
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 331 LEDIAAV--AVALRLDGLIISNTTISRPDPVSKNPVAKETGG-----LSGKPLLSLSNNI 383
EDI +V +V ++ +II + + ++ ++K G +G +
Sbjct: 138 YEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFGTGGATAED 197
Query: 384 LKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLV 420
+ M + ++ + GGI + EDA + I GA +
Sbjct: 198 VHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRI 234
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 32.4 bits (72), Expect = 0.11
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 262 GVH--TLSQYADYLVINVSSPNTP-----------GLRMLQGRKQLKDLVKKVQ 302
+ + S+ A Y + S P P GLR+L+ L +++ VQ
Sbjct: 417 QYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQ 470
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 31.1 bits (70), Expect = 0.20
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 383 ILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLV 420
+ + L + + GGI SG DA + AGA ++
Sbjct: 181 VFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADII 218
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein
6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 465
Score = 31.5 bits (70), Expect = 0.22
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 13/54 (24%)
Query: 262 GVH--TLSQYADYLVINVSSPNTPG-----------LRMLQGRKQLKDLVKKVQ 302
+ S D+ ++ P P + L+ + +K + Q
Sbjct: 411 TYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAINDRQ 464
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 31.5 bits (71), Expect = 0.23
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 363 PVAKETGGLSGKPLLSLSNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQL 422
+ + G + ++ + +L E L R ++ L GG+ +G D GA
Sbjct: 640 LSSIKHAGSPWELGVTEVHRVLMENQL--RDRVLLRADGGLKTGWDVVMAALMGAEEYGF 697
Query: 423 YTAF 426
+
Sbjct: 698 GSIA 701
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 31.5 bits (70), Expect = 0.23
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 392 RGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPA--------LIPQIKAELAE 443
+ P++ G G D + + GA V L A YG A ++ +KA++
Sbjct: 273 KTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDR 332
Query: 444 CLERDGFKSI 453
L + G I
Sbjct: 333 TLAQIGCPDI 342
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 323
Score = 30.9 bits (69), Expect = 0.31
Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 394 KIPLIGCGGISSGEDAYRKIR-AGATLVQLYTAFAYGGPALIPQIKAELAE 443
KIP+I G E A F G + +K L E
Sbjct: 264 KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFT-VNDVKEYLLE 313
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 29.6 bits (66), Expect = 0.54
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 385 KEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLV 420
+ + +G+ + GGI E A R ++AGA+ +
Sbjct: 166 ALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRL 201
>d2gtaa1 a.204.1.2 (A:1-98) Hypothetical protein YpjD {Bacillus
subtilis [TaxId: 1423]}
Length = 98
Score = 27.8 bits (62), Expect = 0.76
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 292 KQLKDLVKKVQAARDEMQWGEEGPPPLLVKIA 323
K +KD+ +V + + G P ++ ++
Sbjct: 4 KTMKDIQAEVDRYIGQFKEGYFSPLAMMARLT 35
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 29.6 bits (65), Expect = 0.84
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 394 KIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPAL 433
K P++G G + E + G A ++ P++
Sbjct: 291 KKPVLGVGRYTDPEKMIEIVTKGYADII------GCARPSI 325
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 525
Score = 29.5 bits (65), Expect = 1.1
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 6/40 (15%)
Query: 183 RLRQEGAIINRCGFNSEGIVAVAKRLGA------QHGKRK 216
R+R G+ I G + K Q G R
Sbjct: 39 RIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRG 78
>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri
[TaxId: 316]}
Length = 92
Score = 27.3 bits (59), Expect = 1.4
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 270 ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKE 329
D + P G KQL+D + G + + LS +
Sbjct: 20 VDGNSPAPNFPKLAGQGERYLLKQLQD---IKAGSTPGAPEGVGRKVLEMTGMLDPLSDQ 76
Query: 330 DLEDIAA 336
DLEDIAA
Sbjct: 77 DLEDIAA 83
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 28.7 bits (62), Expect = 1.4
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 219 ETSRTSSSPNDEVKAGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYL 273
E +P + G + ++ K D++ V L + +
Sbjct: 174 EAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFI--VSDLREVIKIV 226
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 28.5 bits (63), Expect = 1.5
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 391 TRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTA----FAYGGPALIPQIKAEL 441
+ GG+ + EDA + + L A + +G +L+ + L
Sbjct: 194 VEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSLLASLLKAL 248
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 28.4 bits (62), Expect = 1.7
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 7 LRDFSYRRVISSTLGRSRHCFSSSSSSSSSS 37
+ + +R + +TL ++ +S++ S
Sbjct: 308 MMNKQFRNCMVTTLCCGKNPLGDDEASTTVS 338
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId:
303]}
Length = 216
Score = 28.0 bits (62), Expect = 2.1
Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 3/53 (5%)
Query: 392 RGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAEC 444
L G S Y G +L+ A GG A I +
Sbjct: 109 SEIPLLPGISTPSEIMMGYA---LGYRRFKLFPAEISGGVAAIKAFGGPFGDI 158
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium
cochlearium [TaxId: 1494]}
Length = 137
Score = 27.3 bits (60), Expect = 2.3
Identities = 15/126 (11%), Positives = 31/126 (24%), Gaps = 9/126 (7%)
Query: 328 KEDLEDIAA--VAVALRLDGLIISNTTISRPDPVSKNPVAKETG---GLSG--KPLLSLS 380
D + + A G + N + P + + +S
Sbjct: 12 GSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDC 71
Query: 381 NNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAE 440
+ ++ I L G I G+ + + + Y A+
Sbjct: 72 KGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVE--KRFKDMGYDRVYAPGTPPEVGIAD 129
Query: 441 LAECLE 446
L + L
Sbjct: 130 LKKDLN 135
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga maritima
[TaxId: 2336]}
Length = 241
Score = 27.7 bits (60), Expect = 2.8
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 394 KIPLIGCGGISSGEDAYRKIRAGA 417
++ ++ GGISS +
Sbjct: 188 EVKVLAAGGISSENSLKTAQKVHT 211
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus
subtilis [TaxId: 1423]}
Length = 337
Score = 27.6 bits (60), Expect = 3.6
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 392 RGKIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPALI-PQIKAELAECLERD 448
+ + G I+ G A ++ G A L+ G L P A+ L +
Sbjct: 274 QADMATGAVGMITDGSMAEEILQNGRADLI------FIGRELLRDPFFARTAAKQLNTE 326
>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId:
2743]}
Length = 86
Score = 25.9 bits (56), Expect = 3.8
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 9/67 (13%)
Query: 270 ADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKE 329
+ + PN G + LK + A LS
Sbjct: 20 QNGISQVPIYPNLAGQKEQYLVAALKAYKAGQRQGGQAPVMQG---------QATALSDA 70
Query: 330 DLEDIAA 336
D+ ++AA
Sbjct: 71 DIANLAA 77
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 27.2 bits (59), Expect = 4.9
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 394 KIPLIGCGGISSGEDAYRKIRAG-ATLVQLYTAFAYGGPAL 433
+PL+ I+ + A + G A +V + P L
Sbjct: 280 SLPLVTTNRINDPQVADDILSRGDADMV------SMARPFL 314
>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase
{Plasmodium yoelii yoelii [TaxId: 73239]}
Length = 256
Score = 25.8 bits (56), Expect = 9.8
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 384 LKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYT----AFAYGGPALIPQIKA 439
+ KI L GGIS A I + F G +L+ +++
Sbjct: 194 YIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFLSSLACHPDNFRIGSSSLVIKLRK 253
Query: 440 ELA 442
++
Sbjct: 254 VIS 256
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.391
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,672,056
Number of extensions: 77589
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 46
Length of query: 462
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 374
Effective length of database: 1,199,356
Effective search space: 448559144
Effective search space used: 448559144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)