Query 012519
Match_columns 461
No_of_seqs 442 out of 2359
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 11:01:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 4.1E-37 1.4E-41 299.1 30.6 352 93-460 22-385 (451)
2 3o7q_A L-fucose-proton symport 100.0 1.6E-36 5.6E-41 293.7 32.9 330 97-459 24-384 (438)
3 2gfp_A EMRD, multidrug resista 100.0 6.2E-35 2.1E-39 276.7 14.2 324 102-460 3-329 (375)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.8E-30 1.3E-34 252.8 29.9 326 129-460 49-425 (491)
5 4gc0_A D-xylose-proton symport 100.0 2.9E-31 1E-35 260.7 21.7 354 94-460 7-409 (491)
6 2cfq_A Lactose permease; trans 99.9 4.1E-27 1.4E-31 226.0 15.7 317 116-460 24-351 (417)
7 2xut_A Proton/peptide symporte 99.9 9.2E-25 3.2E-29 216.2 22.0 167 107-275 20-198 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.7 6.5E-16 2.2E-20 149.5 20.0 171 105-275 258-433 (451)
9 2cfq_A Lactose permease; trans 99.6 2.3E-14 8E-19 137.1 18.1 146 133-280 258-404 (417)
10 3o7q_A L-fucose-proton symport 99.6 7.9E-14 2.7E-18 134.3 20.4 150 116-270 275-427 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.4 5.1E-13 1.8E-17 130.7 10.1 162 117-279 301-475 (491)
12 4gc0_A D-xylose-proton symport 99.4 1.3E-11 4.5E-16 120.6 19.1 178 104-282 282-469 (491)
13 2gfp_A EMRD, multidrug resista 99.3 8.2E-12 2.8E-16 117.5 8.2 154 106-262 206-363 (375)
14 2xut_A Proton/peptide symporte 99.0 4.7E-10 1.6E-14 110.5 8.8 144 135-278 336-505 (524)
15 2g9p_A Antimicrobial peptide l 61.6 3.8 0.00013 19.7 1.2 14 153-166 2-15 (26)
16 2jln_A MHP1; hydantoin, transp 59.8 98 0.0034 29.4 12.0 54 217-270 19-74 (501)
17 2dw3_A Intrinsic membrane prot 24.9 1.5E+02 0.0052 19.5 5.3 30 253-282 31-60 (77)
18 4dve_A Biotin transporter BIOY 22.1 1.1E+02 0.0037 24.8 4.5 25 140-164 99-123 (198)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=4.1e-37 Score=299.13 Aligned_cols=352 Identities=18% Similarity=0.187 Sum_probs=278.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Q 012519 93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA 172 (461)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 172 (461)
.++.++..+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 3455677888888899999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012519 173 LWSLATFLTPW----AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 248 (461)
Q Consensus 173 ~~~i~~~~~~~----~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 248 (461)
+.+++.+++++ + ++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+
T Consensus 101 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 8 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC-chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChh--HHHHhcchh
Q 012519 249 MSQAG-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP--FRRLLSKMP 325 (461)
Q Consensus 249 ~~~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 325 (461)
.+..| ||+.|++.+++.++..++.++..||+|++.+..+.++.++..+. . .+...+++....+ .++.+++|.
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~ 253 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD---D--YNEKAEQELTAKQIFMQYVLPNKL 253 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------CCTHHHHHHTSSCHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccc---c--chhhhhcccccccchHHHHHcCHH
Confidence 99998 99999999999888777777777877655432211110000000 0 0000111111122 467889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhH--hhcCcchhhhHHHHHH
Q 012519 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML--IQRGTSVTLTRKILQS 403 (461)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--~~~~~~~~~~~~~~~~ 403 (461)
++...+..++..+..+....++|.|+++.+|++..+++++.+...++.+++.++.|++.||+ ++| +.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~ 325 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--------GATGV 325 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------hhHHH
Confidence 99999999999999999999999999998899999999999999999999999999999998 766 23333
Q ss_pred HhhHHHHHHHHHHhccC--hhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519 404 IGFIAPGIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG 460 (461)
Q Consensus 404 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g 460 (461)
...+...++++.+...+ +.+......++.+.+.+...+....+..+..|+ ++|++.|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 33333324444444432 333334444444444555556667788888875 5887765
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.6e-36 Score=293.72 Aligned_cols=330 Identities=15% Similarity=0.108 Sum_probs=269.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHH
Q 012519 97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL 176 (461)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i 176 (461)
++..+..+++..++.+++.....+..|.+.+++|.+..+.|++.+++.++..++.+++|+++||+|||++++++.++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 45566677778888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh---hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhc
Q 012519 177 ATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQA 252 (461)
Q Consensus 177 ~~~~~---~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~ 252 (461)
+.+++ +++ ++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +..
T Consensus 104 ~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 104 GAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999 888 999999999999999999999999999999999999999999999999999999999999998 555
Q ss_pred C-------------------------chhHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCcchhHHHHHHHhhcCccccCC
Q 012519 253 G-------------------------IFGPFVIFGLSGFLWVLVWLSA-TSSTPDRHPQISKYELEYILREKQKPLLMGN 306 (461)
Q Consensus 253 g-------------------------wr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (461)
+ ||+.|++.+++.++..++.++. .||++++.+ +
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------------------~ 240 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---------------------S 240 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC---------------------C
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---------------------c
Confidence 4 9999988887777665554443 233222110 1
Q ss_pred CCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHHHH-HHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhh
Q 012519 307 KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY-FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385 (461)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~d 385 (461)
+++++....++++++++|.++...+..++..........++|.| +++.+|++..+++.......++.+++.++.|++.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 320 (438)
T 3o7q_A 241 DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS 320 (438)
T ss_dssp CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222334567889999999999999999999999999999999 88888999999999999999999999999999999
Q ss_pred hHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccccccccc
Q 012519 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLH 459 (461)
Q Consensus 386 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 459 (461)
|+++| ..+..+.++.+++++.....++....+. +++.+++.+...+....+..+..|++++.+.
T Consensus 321 r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (438)
T 3o7q_A 321 RFAPH---------KVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQDTKYGS 384 (438)
T ss_dssp HSCHH---------HHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGGHHHHH
T ss_pred Hhcch---------HHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccccchh
Confidence 99988 2333444455555555555555544333 3444455566667777777777776655543
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=6.2e-35 Score=276.72 Aligned_cols=324 Identities=14% Similarity=0.103 Sum_probs=265.0
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHh
Q 012519 102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT 181 (461)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 181 (461)
.++++..++..++...+.+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45667777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 012519 182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 261 (461)
Q Consensus 182 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~ 261 (461)
+++ ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.++.|||+.|++.
T Consensus 83 ~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 83 VTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 999 999999999999999999999999999999999999999999999999999999999999999988999999998
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHH
Q 012519 262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF 341 (461)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (461)
+++.++..+...+..||+++++++ +++...++++.+|+|+++...+..++......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRPVDAP------------------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIA 216 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCSTTTCC------------------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcccCCCCcc------------------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 888877666555555665433211 01122344578889999999999999999999
Q ss_pred HHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhh-HHHHHHHHHHhc--
Q 012519 342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALIGLTA-- 418 (461)
Q Consensus 342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 418 (461)
....+.|.|+++.+|+++.+.+.+.....++.+++.++.+++.||.+++ ....... ...+..++....
T Consensus 217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 287 (375)
T 2gfp_A 217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFG 287 (375)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999998899999999999999999999999999999998864 1111111 111111111111
Q ss_pred cChhHHHHHHHHHHHHHHhhhhhchhHhhhhhcccccccccC
Q 012519 419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG 460 (461)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g 460 (461)
.++.+......++.+.+.+...+....+..|..|+++|++.|
T Consensus 288 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g 329 (375)
T 2gfp_A 288 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGA 329 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHH
Confidence 123333444445555666777788888889988988887765
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=3.8e-30 Score=252.80 Aligned_cols=326 Identities=15% Similarity=0.143 Sum_probs=229.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhh-hcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchh
Q 012519 129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL 207 (461)
Q Consensus 129 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 207 (461)
+|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++ ++++.++++|+++|++.+...
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999 899999999999999999999999 999999999999999999999
Q ss_pred hHHHHHHHhhcCchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCCCCC--
Q 012519 208 PAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-- 283 (461)
Q Consensus 208 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~-- 283 (461)
+...++++|++|+++ |+.++++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+..++..++..++.
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 8888999999999999999999999999999999999988777766655554433222111
Q ss_pred ---CCcchhHHHHHHHh----------------hcCccccCCC-----------------CCCCCCChhHHHHhcchhhH
Q 012519 284 ---PQISKYELEYILRE----------------KQKPLLMGNK-----------------HKPATVIPPFRRLLSKMPTW 327 (461)
Q Consensus 284 ---~~~~~~~~~~~~~~----------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 327 (461)
....+++.++..+. ..+....+.. ...+.......+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI 286 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 11112222211111 0000000000 00000000001111223345
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhH
Q 012519 328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI 407 (461)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 407 (461)
...+..++....+.....++|.|.++..+.+....+.......++.+++.++.+++.||++||+... ...+..+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~----~~~~~~~~~ 362 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS----PTKFAVGLM 362 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc----hHHHHHHHH
Confidence 5555666666666777788899999888888788899999999999999999999999999884321 122233444
Q ss_pred HHHHHHHHHhcc---------ChhHHHHHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519 408 APGIALIGLTAA---------KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG 460 (461)
Q Consensus 408 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g 460 (461)
+.+++++..... .+.+......++.+.+.+...+....+..+..|+ .||++.|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 425 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMS 425 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTH
T ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHH
Confidence 444443333221 1334444444555555666667778888898885 5888876
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.98 E-value=2.9e-31 Score=260.71 Aligned_cols=354 Identities=16% Similarity=0.139 Sum_probs=238.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhhcCC--------CchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchH
Q 012519 94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGW--------SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI 165 (461)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 165 (461)
+++.+.+.++.+++.++.++|...++.++|.+.++++. +..+.|++.+++.+|.+++++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 34556666777888999999999999999999887743 3456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc------------------cccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHH
Q 012519 166 IMAWGVALWSLATFLTPW------------------AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAV 227 (461)
Q Consensus 166 ~~~~~~~~~~i~~~~~~~------------------~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 227 (461)
+++++.+++.++.+++++ + +|+++++++|+++|+|.|...+....+++|+.|+++|++..
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA--GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG--GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 999999999999999884 5 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--------cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CcchhHHHHHHHhh
Q 012519 228 AIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELEYILREK 298 (461)
Q Consensus 228 ~~~~~~~~~G~~~g~~~~~~l~~~--------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 298 (461)
++.+.+..+|.++++.++..+... .+||+.+.+..+..++.. +..+..||+|+... +.+.++.++..++.
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKI 243 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence 999999999999999988877653 236766666665555543 44556688875321 11112211111110
Q ss_pred cCc-c------ccCCCCCCCCCChhHHHHhcchhhHHHHHHH-HHHHHHHHHHHHhHHHHHHHhhCCCccccchhhhhhH
Q 012519 299 QKP-L------LMGNKHKPATVIPPFRRLLSKMPTWSIIVAN-AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370 (461)
Q Consensus 299 ~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 370 (461)
... . ...+..............++.++........ +......+.+..|.|.+.+. .+.+.........+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 322 (491)
T 4gc0_A 244 MGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVG 322 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHH
Confidence 000 0 0000000000001112333344444433333 33344455566667766665 4777777777777888
Q ss_pred HHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHH--h--ccChhHHHHHHHHHHHHHHhhh-hhchhH
Q 012519 371 SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL--T--AAKSPVMASAWLTLAIGMKSFS-HSGFLV 445 (461)
Q Consensus 371 ~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 445 (461)
+..+++.++++++.||+||| +.. ..+....+++++.+ . ........+...++...+.... .+..+.
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr-------~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRK-------PLQ--IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWV 393 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSH-------HHH--HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCc-------chh--ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88999999999999999998 222 22222222222221 1 1222233333333333333333 356678
Q ss_pred hhhhhccc-ccccccC
Q 012519 446 NLQEIAPQ-YSGVLHG 460 (461)
Q Consensus 446 ~~~~~~p~-~~g~~~g 460 (461)
+..|++|. .|+++.|
T Consensus 394 ~~~E~fPt~~R~~~~g 409 (491)
T 4gc0_A 394 LLSEIFPNAIRGKALA 409 (491)
T ss_dssp HHHHSSCTTTHHHHHH
T ss_pred HHHHhCCHhHHHHHHH
Confidence 89999995 5887765
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=4.1e-27 Score=225.96 Aligned_cols=317 Identities=14% Similarity=0.073 Sum_probs=203.5
Q ss_pred hhhHhhhhh-hhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHH---HHhhccccccHH-
Q 012519 116 VVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT---FLTPWAADTSLL- 190 (461)
Q Consensus 116 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~~~~- 190 (461)
....+.+|. +.+++|.+..+.|++.+.+.++..++++++|+++||+|||++++++..+.+++. ....+. +...
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 101 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQY 101 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 344455555 556799999999999999999999999999999999999999999888775532 222222 2211
Q ss_pred HHHHHHHHHhhhhhchhhHHHHHHHhhcCc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 012519 191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW 268 (461)
Q Consensus 191 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~ 268 (461)
.++..+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALIL 180 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence 234456666665554444444444444432 456778888888899999999999999987 58999999877765444
Q ss_pred HHHHHHhcCCCCCCCCCcchhHHHHHHHhhcCccccCCCCCCCCCChhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhHH
Q 012519 269 VLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMP 348 (461)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (461)
.+..++..||+++..+. ++ .++.++++....++++++++|+++...+..++....+.....++|
T Consensus 181 ~~~~~~~~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (417)
T 2cfq_A 181 AVLLFFAKTDAPSSATV---AN-------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFA 244 (417)
T ss_dssp HHHSCSSCCCCSCSSCS---SS-------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccccccccc---cc-------------ccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44333333333221100 00 000011112234566888999998877766666666666677889
Q ss_pred HHHHHhhCC---CccccchhhhhhHHHHHHHHHHHHHhhhhHhhcCcchhhhHHHHHHHhhHHHHHHHHHHhccChhHHH
Q 012519 349 IYFNFVYHI---DLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMA 425 (461)
Q Consensus 349 ~~~~~~~g~---s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (461)
.|+.+.++. +....++...+..++.+++.++.|+++||+++| + .+..+.++.++.++.....++.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-------~--~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (417)
T 2cfq_A 245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-------N--ALLLAGTIMSVRIIGSSFATSALEV 315 (417)
T ss_dssp HHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-------H--HHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-------H--HHHHHHHHHHHHHHHHHHhccHHHH
Confidence 888775442 233456677777788889999999999999988 2 2334444455555455444444433
Q ss_pred HHHHHHHHHHHhhhhhchhHhhhhhccc-ccccccC
Q 012519 426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHG 460 (461)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g 460 (461)
++..++.....+...+..+.+..|..|+ .||++.|
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 351 (417)
T 2cfq_A 316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYL 351 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3333333333444445557788888874 4776543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=9.2e-25 Score=216.20 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=144.5
Q ss_pred HHHHHHHHHhhhHhhh-hhhhhhcC------CCchhHHHHHHHHHHHHHHhHhhhhhhhhhh-cchHHHHHHHHHHHHHH
Q 012519 107 ALALCNADRVVMSVAI-VPLSLAHG------WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLAT 178 (461)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~i~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~ 178 (461)
..++..+........+ +.+.+++| .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~ 99 (524)
T 2xut_A 20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH 99 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3333333333343444 45677889 9999999999999999999999999999999 99999999999999999
Q ss_pred HHhhccccc-cHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCc
Q 012519 179 FLTPWAADT-SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI---AMGGFTSGNAIGLVLSPILMSQAGI 254 (461)
Q Consensus 179 ~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~gw 254 (461)
++++++ + +++.++++|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|..+||.+++.+.+..||
T Consensus 100 ~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (524)
T 2xut_A 100 AFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA 177 (524)
T ss_dssp HHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred HHHHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 999999 8 999999999999999999999999999999999999876666 9999999999999999999998999
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 012519 255 FGPFVIFGLSGFLWVLVWLSA 275 (461)
Q Consensus 255 r~~f~~~~~~~~~~~~~~~~~ 275 (461)
|+.|++.+++.++..+..++.
T Consensus 178 ~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 178 AVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999888877665555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.70 E-value=6.5e-16 Score=149.51 Aligned_cols=171 Identities=11% Similarity=-0.024 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhhh-cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhh--cchHHHHHHHHHHH-HHHHH
Q 012519 105 ALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMAWGVALWS-LATFL 180 (461)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~~ 180 (461)
.+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++..+.. ++.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (451)
T 1pw4_A 258 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 337 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 333444444444555666666665 899999999999999999999999999999999 99999888887776 77777
Q ss_pred hhccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCchhHHH
Q 012519 181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPFV 259 (461)
Q Consensus 181 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~gwr~~f~ 259 (461)
..+....+.+.+++..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||+..|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 417 (451)
T 1pw4_A 338 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 417 (451)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred HHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 76663347888888889999999988999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 012519 260 IFGLSGFLWVLVWLSA 275 (461)
Q Consensus 260 ~~~~~~~~~~~~~~~~ 275 (461)
+.+++.++..++.++.
T Consensus 418 ~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 418 VMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888776665554
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.60 E-value=2.3e-14 Score=137.07 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=126.6
Q ss_pred chhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhhchhhHHHH
Q 012519 133 RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 212 (461)
Q Consensus 133 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 212 (461)
....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++. ++.+.+++..++.+++.+...+....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888999999999999999999999999999988888888887 88888888888888887777777889
Q ss_pred HHHhhcCchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 012519 213 MVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 280 (461)
Q Consensus 213 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~ 280 (461)
++.|.+|++.|+.+.++ ++....+|..++|.+++.+.++.|++..|.+.+++.++..++.++..+|++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999999 488889999999999999999889999999988888877776666555543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.59 E-value=7.9e-14 Score=134.29 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=125.9
Q ss_pred hhhHhhhhhh-h-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhccccccHHHHH
Q 012519 116 VVMSVAIVPL-S-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALL 193 (461)
Q Consensus 116 ~~~~~~~~~i-~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 193 (461)
.......|.+ . +.+|.+..+.+++.+...++..++.++.|+++||+|||+++.++.++..++.++..+. ++.+.++
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 352 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHVGLI 352 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--CCcHHHH
Confidence 3444444544 4 4459999999999999999999999999999999999999999999999999888888 7776655
Q ss_pred HHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHH
Q 012519 194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVL 270 (461)
Q Consensus 194 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~ 270 (461)
.. ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++..+
T Consensus 353 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 353 AL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44 8889999999999999999999855 888888877 566999999999999999999 99999987655544333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.41 E-value=5.1e-13 Score=130.67 Aligned_cols=162 Identities=16% Similarity=0.073 Sum_probs=126.5
Q ss_pred hhHhhhhhhh-hhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHH-----HHHHHHHHHHHHhhcc------
Q 012519 117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA-----WGVALWSLATFLTPWA------ 184 (461)
Q Consensus 117 ~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~------ 184 (461)
.....++.+. +.++.+..+.+++.+...++..++.++.|++.||+|||+... ++.++.+++.++.++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3334444443 446766678888899999999999999999999999986554 7777777777766653
Q ss_pred -ccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 012519 185 -ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 263 (461)
Q Consensus 185 -~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~ 263 (461)
...+.+.+++.-++.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+ .++.+.|++.++
T Consensus 381 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~ 459 (491)
T 4aps_A 381 SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGL 459 (491)
T ss_dssp CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence 113778888889999999999999999999999999999999999999999999999999887765 467788888888
Q ss_pred HHHHHHHHHHHhcCCC
Q 012519 264 SGFLWVLVWLSATSST 279 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~ 279 (461)
+.++..++.++..++.
T Consensus 460 ~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 460 GSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877777666665443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.39 E-value=1.3e-11 Score=120.57 Aligned_cols=178 Identities=17% Similarity=0.070 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHhhc
Q 012519 104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW 183 (461)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 183 (461)
.....+........+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence 33333434444445555667788888888888888888888999999999999999999999999988888877766543
Q ss_pred c--ccccHHHHHHHH--HHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------hcC
Q 012519 184 A--ADTSLLALLAMR--AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS------QAG 253 (461)
Q Consensus 184 ~--~~~~~~~l~~~r--~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~g 253 (461)
. ...+.+..++.- +..+++. ...+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+ ..+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~ 440 (491)
T 4gc0_A 362 AFYTQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH 440 (491)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred HHhcccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3 112222222222 2223332 3457778999999999999999999999999999999888766533 456
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012519 254 IFGPFVIFGLSGFLWVLVWLSATSSTPDR 282 (461)
Q Consensus 254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~ 282 (461)
+.+.|++.++++++..++.+++.||+..+
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 77889999999999888888888887543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.25 E-value=8.2e-12 Score=117.53 Aligned_cols=154 Identities=17% Similarity=0.053 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhhhHhhhhhhhhh-cCCCchhHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHH-HHHHHHH--h
Q 012519 106 LALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL-WSLATFL--T 181 (461)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~~--~ 181 (461)
+..++............|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|++ +..+..+ ..++..+ .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~ 283 (375)
T 2gfp_A 206 LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIP 283 (375)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 33334444444555666766555 899999999999999999999999999999999883 2333332 2222221 1
Q ss_pred hccccccHHHHHHHHHHHhhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 012519 182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 261 (461)
Q Consensus 182 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~ 261 (461)
.....++.+.+++..++.|++.+...+...+++.|.+| ++|+++.++.+....+|..++|.+.+.+.+..+|+..+++.
T Consensus 284 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 284 DWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 22111477778888899999999999999999999997 89999999999999999999999999998887888777764
Q ss_pred H
Q 012519 262 G 262 (461)
Q Consensus 262 ~ 262 (461)
+
T Consensus 363 ~ 363 (375)
T 2gfp_A 363 L 363 (375)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.02 E-value=4.7e-10 Score=110.55 Aligned_cols=144 Identities=13% Similarity=0.024 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhh----hhhcc----hHHHHHHHHHHHHHHHHhhccc-------cccHHHHHHHHHHH
Q 012519 135 FSGIVQSSFLWGYLVSPIAGGTLV----DYYGG----KIIMAWGVALWSLATFLTPWAA-------DTSLLALLAMRAVV 199 (461)
Q Consensus 135 ~~~~~~s~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~i~~~~~~~~~-------~~~~~~l~~~r~l~ 199 (461)
..+++.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++.. ..+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 466777777777777788877775 55543 3567788888888888776641 14778888889999
Q ss_pred hhhhhchhhHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--Cc---------hhHHHHHHHHHHHH
Q 012519 200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GI---------FGPFVIFGLSGFLW 268 (461)
Q Consensus 200 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--gw---------r~~f~~~~~~~~~~ 268 (461)
|++.+...+...+++.|.+|+++||+++|+.+....+|..+||.+.+.+.+.. +| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887632 23 33477777777766
Q ss_pred HHHHHHhcCC
Q 012519 269 VLVWLSATSS 278 (461)
Q Consensus 269 ~~~~~~~~~~ 278 (461)
.++.++..++
T Consensus 496 ~~~~~~~~~~ 505 (524)
T 2xut_A 496 AIVFALYARS 505 (524)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=61.58 E-value=3.8 Score=19.66 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=11.4
Q ss_pred hhhhhhhhhcchHH
Q 012519 153 AGGTLVDYYGGKII 166 (461)
Q Consensus 153 ~~g~l~dr~Grr~~ 166 (461)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=59.84 E-value=98 Score=29.42 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=29.8
Q ss_pred hcCchhh-hHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCchhHHHHHHHHHHHHHH
Q 012519 217 WFPQTER-ARAVAIAMGGFTSGNAIGLV-LSPILMSQAGIFGPFVIFGLSGFLWVL 270 (461)
Q Consensus 217 ~~~~~~r-~~~~~~~~~~~~~G~~~g~~-~~~~l~~~~gwr~~f~~~~~~~~~~~~ 270 (461)
-.|+++| .....+.....+....++.. +++.+....+|...++...+..++..+
T Consensus 19 pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~ 74 (501)
T 2jln_A 19 PTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVI 74 (501)
T ss_dssp CCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH
Confidence 3566666 55666665555555555555 444444455677676655544444433
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=24.93 E-value=1.5e+02 Score=19.51 Aligned_cols=30 Identities=13% Similarity=-0.064 Sum_probs=14.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012519 253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDR 282 (461)
Q Consensus 253 gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~ 282 (461)
||-.++.+...+.++..-.+-..+||..+.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 444455544444444444444556665543
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.05 E-value=1.1e+02 Score=24.84 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhcch
Q 012519 140 QSSFLWGYLVSPIAGGTLVDYYGGK 164 (461)
Q Consensus 140 ~s~~~~~~~~~~~~~g~l~dr~Grr 164 (461)
+.-|.+++.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3567788888888889998886543
Done!