BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012520
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GAI|A Chain A, Glucoamylase-471 Complexed With D-Gluco-Dihydroacarbose
Length = 472
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 139 LSKQKTVSRSKLKVSINLPDNEISLANSNVLMRSPVC-LPTSMMTWMEESAKCSRSIAEV 197
LS + TV+R+ + +I +S A+S +++ SP P TW +S +++ ++
Sbjct: 7 LSNEATVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDL 66
Query: 198 LREVDADILS 207
R D D+LS
Sbjct: 67 FRNGDTDLLS 76
>pdb|1AGM|A Chain A, Refined Structure For The Complex Of Acarbose With
Glucoamylase From Aspergillus Awamori Var. X100 To 2.4
Angstroms Resolution
pdb|1DOG|A Chain A, Refined Structure For The Complex Of 1-deoxynojirimycin
With Glucoamylase From (aspergillus Awamori) Var. X100
To 2.4 Angstroms Resolution
pdb|1GLM|A Chain A, Refined Crystal Structures Of Glucoamylase From
Aspergillus Awamori Var. X100
pdb|3GLY|A Chain A, Refined Crystal Structures Of Glucoamylase From
Aspergillus Awamori Var. X100
Length = 470
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 139 LSKQKTVSRSKLKVSINLPDNEISLANSNVLMRSPVC-LPTSMMTWMEESAKCSRSIAEV 197
LS + TV+R+ + +I +S A+S +++ SP P TW +S +++ ++
Sbjct: 7 LSNEATVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDL 66
Query: 198 LREVDADILS 207
R D D+LS
Sbjct: 67 FRNGDTDLLS 76
>pdb|1GAH|A Chain A, Glucoamylase-471 Complexed With Acarbose
Length = 471
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 139 LSKQKTVSRSKLKVSINLPDNEISLANSNVLMRSPVC-LPTSMMTWMEESAKCSRSIAEV 197
LS + TV+R+ + +I +S A+S +++ SP P TW +S +++ ++
Sbjct: 7 LSNEATVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDL 66
Query: 198 LREVDADILS 207
R D D+LS
Sbjct: 67 FRNGDTDLLS 76
>pdb|1AFV|H Chain H, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
pdb|1AFV|K Chain K, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
Length = 220
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 279 WAGEVNVDSTQLDHLNEKWRMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKY 338
W GE++ +S ++ NEK++ K + S+ + ++ L S D + Y RW Y
Sbjct: 47 WIGEIHPNSGNTNY-NEKFKGKATLTVDTSSSTAYVDLSSLTSEDSAVYYCARWRYGSPY 105
Query: 339 YED 341
Y D
Sbjct: 106 YFD 108
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 88/187 (47%), Gaps = 10/187 (5%)
Query: 98 EGCLALKSPVEMKNQAKAASYCPKSILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLP 157
+G + + ++ + A+A+++ + + + + + T E + T KL ++++
Sbjct: 501 DGLIGAANRIDNEFNARASAFSALTTMVE---YATDTVAETSASISTFVMDKLGQTMSVD 557
Query: 158 DNEISLANSNVLMRSPVCLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQDVKAEEEN 217
+N+++L ++ L + T + + +S +A++L + +L +D E++
Sbjct: 558 ENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDD 617
Query: 218 DMKPLSDLAAALGMKYV-FAESWAPEYGNAILS-KWPIKRWKVQKIAD-----DKDFRNV 270
+S LAA+LG + + E+++P A+ P+ V IAD ++DFR
Sbjct: 618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRY 677
Query: 271 LKATVDV 277
A ++V
Sbjct: 678 SDAMMNV 684
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 88/187 (47%), Gaps = 10/187 (5%)
Query: 98 EGCLALKSPVEMKNQAKAASYCPKSILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLP 157
+G + + ++ + A+A+++ + + + + + T E + T KL ++++
Sbjct: 501 DGLIGAANRIDNEFNARASAFSALTTMVE---YATDTVAETSASISTFVMDKLGQTMSVD 557
Query: 158 DNEISLANSNVLMRSPVCLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQDVKAEEEN 217
+N+++L ++ L + T + + +S +A++L + +L +D E++
Sbjct: 558 ENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDD 617
Query: 218 DMKPLSDLAAALGMKYV-FAESWAPEYGNAILS-KWPIKRWKVQKIAD-----DKDFRNV 270
+S LAA+LG + + E+++P A+ P+ V IAD ++DFR
Sbjct: 618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRY 677
Query: 271 LKATVDV 277
A ++V
Sbjct: 678 SDAMMNV 684
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 132 SLTSPEHLSKQKTVSRSKLKVSINLPDNEISLANSNVLMRSPVCLPTSMMTWMEESAKCS 191
SLT L+ T+ K+ I L DNE+S+ + NV + + W +E
Sbjct: 156 SLTGGMALAALNTIGDMGRKMLIVLNDNEMSI-SENVGAMNKFMRGLQVQKWFQEGEGAG 214
Query: 192 RSIAEVLREVDADILSLQDVKAEEENDMKPLSDLA-----AALGMKYV 234
+ E + + AD +S +N + D A AA+G++YV
Sbjct: 215 KKAVEAVSKPLADFMS------RAKNSTRHFFDPASVNPFAAMGVRYV 256
>pdb|1O60|A Chain A, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|B Chain B, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|C Chain C, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|D Chain D, Crystal Structure Of Kdo-8-Phosphate Synthase
Length = 292
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 298 RMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKP 345
++ +I I +ND P +L GG N L+ D + + VK E +G P
Sbjct: 4 KIVKIGNIDVANDKPFVLFGGXNVLESRDXAXQVCEAYVKVTEKLGVP 51
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 122 SILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLPD-NEISLANSNVLM------RSPV 174
+ILKQ L E +++ +V VS++ P +E+ L + ++ R V
Sbjct: 14 AILKQKNRPNRLIVDEAINEDNSV------VSLSQPKMDELQLFRGDTVLLKGKKRREAV 67
Query: 175 CLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQ---DVKAEEENDMKPLSDLAAALG- 230
C+ S T +E + +R + LR D++S+Q DVK + + P+ D +
Sbjct: 68 CIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITG 127
Query: 231 ------MKYVFAESWAP-EYGNAILSKWPIKRWKVQKIADD 264
+K F E++ P G+ L + ++ + + + D
Sbjct: 128 NLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETD 168
>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
Length = 187
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 122 SILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLPD-NEISLANSNVLM------RSPV 174
+ILKQ L E +++ +V VS++ P +E+ L + ++ R V
Sbjct: 15 AILKQKSRPNRLIVDEAINEDNSV------VSLSQPKMDELQLFRGDTVLLKGKKRREAV 68
Query: 175 CLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQ---DVKAEEENDMKPLSDLAAALG- 230
C+ S T +E + +R + LR D++S+Q DVK + + P+ D +
Sbjct: 69 CIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITG 128
Query: 231 ------MKYVFAESWAP-EYGNAILSKWPIKRWKVQKIADD 264
+K F E++ P G+ L + ++ + + + D
Sbjct: 129 NLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETD 169
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 122 SILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLPD-NEISLANSNVLM------RSPV 174
+ILKQ L E +++ +V VS++ P +E+ L + ++ R V
Sbjct: 18 AILKQKNRPNRLIVDEAINEDNSV------VSLSQPKMDELQLFRGDTVLLKGXKRREAV 71
Query: 175 CLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQ---DVKAEEENDMKPLSDLAAALG- 230
C+ S T +E + +R + LR D++S+Q DVK + + P+ D +
Sbjct: 72 CIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITG 131
Query: 231 ------MKYVFAESWAP 241
+K F E++ P
Sbjct: 132 NLFEVYLKPYFLEAYRP 148
>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
Length = 193
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 136 PEHLSKQKTVSRSKLKVSINLPD-NEISLANSNVLM------RSPVCLPTSMMTWMEESA 188
P L + ++ VS++ P +E+ L + ++ R VC+ S T +E
Sbjct: 3 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 62
Query: 189 KCSRSIAEVLREVDADILSLQ---DVKAEEENDMKPLSDLAAALG-------MKYVFAES 238
+ +R + LR D++S+Q DVK + + P+ D + +K F E+
Sbjct: 63 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 122
Query: 239 WAP-EYGNAILSKWPIKRWKVQKIADD 264
+ P G+ L + ++ + + + D
Sbjct: 123 YRPIRKGDIFLVRGGMRAVEFKVVETD 149
>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
Motif Of Ubx Domain Suffering Conformational Change
Length = 178
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 136 PEHLSKQKTVSRSKLKVSINLPD-NEISLANSNVLM------RSPVCLPTSMMTWMEESA 188
P L + ++ VS++ P +E+ L + ++ R VC+ S T +E
Sbjct: 5 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 64
Query: 189 KCSRSIAEVLREVDADILSLQ---DVKAEEENDMKPLSDLAAALG-------MKYVFAES 238
+ +R + LR D++S+Q DVK + + P+ D + +K F E+
Sbjct: 65 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 124
Query: 239 WAP-EYGNAILSKWPIKRWKVQKIADD 264
+ P G+ L + ++ + + + D
Sbjct: 125 YRPIRKGDIFLVRGGMRAVEFKVVETD 151
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 281 GEVNVDSTQLDHLNEKWRMKQICAIIQSND-SPHILAGGLNSLDGSDYSAERWMDIVK 337
G + + + E+W Q C + SN ++ GG SL G+D + W +++K
Sbjct: 275 GGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIK 332
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 122 SILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLPD-NEISLANSNVLM------RSPV 174
+ILKQ L E +++ +V VS++ P +E+ L + ++ R V
Sbjct: 15 AILKQKNRPNRLIVDEAINEDNSV------VSLSQPKMDELQLFRGDTVLLKGKKRREAV 68
Query: 175 CLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQ---DVKAEEENDMKPLSDLAAALG- 230
C+ S T +E + +R + LR D++S+Q DVK + + P+ D +
Sbjct: 69 CIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITG 128
Query: 231 ------MKYVFAESWAP-EYGNAILSKWPIKRWKVQKIADD 264
+K F E++ P G+ L + ++ + + + D
Sbjct: 129 NLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETD 169
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 122 SILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLPD-NEISLANSNVLM------RSPV 174
+ILKQ L E +++ +V VS++ P +E+ L + ++ R V
Sbjct: 15 AILKQKNRPNRLIVDEAINEDNSV------VSLSQPKMDELQLFRGDTVLLKGKKRREAV 68
Query: 175 CLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQ---DVKAEEENDMKPLSDLAAALG- 230
C+ S T +E + +R + LR D++S+Q DVK + + P+ D +
Sbjct: 69 CIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITG 128
Query: 231 ------MKYVFAESWAP 241
+K F E++ P
Sbjct: 129 NLFEVYLKPYFLEAYRP 145
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 263 DDKDFRNV-LKATVDV------PWAGEVNVDSTQLDHLNEKWRMKQICAIIQSNDSPHI 314
+D F+NV L+++V V PW G + + +D + +++ K C + +++SP++
Sbjct: 7 NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNV 65
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 122 SILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLPD-NEISLANSNVLM------RSPV 174
+ILKQ L E +++ +V VS++ P +E+ L + ++ R V
Sbjct: 15 AILKQKNRPNRLIVDEAINEDNSV------VSLSQPKMDELQLFRGDTVLLKGKKRREAV 68
Query: 175 CLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQ---DVKAEEENDMKPLSDLAAALG- 230
C+ S T +E + +R + LR D++S+Q DVK + + P+ D +
Sbjct: 69 CIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITG 128
Query: 231 ------MKYVFAESWAP 241
+K F E++ P
Sbjct: 129 NLFEVYLKPYFLEAYRP 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,158,837
Number of Sequences: 62578
Number of extensions: 530197
Number of successful extensions: 1203
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1202
Number of HSP's gapped (non-prelim): 22
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)