Query 012520
Match_columns 461
No_of_seqs 311 out of 1717
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gew_A 5'-tyrosyl-DNA phosphod 100.0 1.3E-27 4.6E-32 244.0 22.1 204 188-429 136-361 (362)
2 3l1w_A Uncharacterized protein 100.0 4.2E-27 1.4E-31 226.3 21.8 207 188-432 21-253 (257)
3 3teb_A Endonuclease/exonucleas 100.0 9.7E-28 3.3E-32 230.7 17.2 215 188-430 20-266 (266)
4 4fva_A 5'-tyrosyl-DNA phosphod 100.0 3.8E-27 1.3E-31 224.0 19.9 204 188-429 30-255 (256)
5 3g6s_A Putative endonuclease/e 99.9 2.5E-26 8.6E-31 222.3 19.3 209 188-433 24-263 (267)
6 4gz1_A Tyrosyl-DNA phosphodies 99.9 9.7E-26 3.3E-30 213.9 19.4 211 188-431 26-255 (256)
7 4f1h_A Tyrosyl-DNA phosphodies 99.9 8.7E-26 3E-30 211.3 18.0 211 188-429 20-249 (250)
8 3mpr_A Putative endonuclease/e 99.9 2.7E-25 9.3E-30 219.7 21.3 209 188-434 29-293 (298)
9 1ako_A Exonuclease III; AP-end 99.9 2.2E-26 7.6E-31 221.4 12.5 227 189-429 13-267 (268)
10 2jc4_A Exodeoxyribonuclease II 99.9 9.7E-26 3.3E-30 215.5 15.1 225 187-430 11-256 (256)
11 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 1.2E-24 4.1E-29 208.5 16.1 223 189-430 14-257 (257)
12 2j63_A AP-endonuclease; base e 99.9 2E-24 6.9E-29 227.1 15.6 227 192-430 169-466 (467)
13 2jc5_A Exodeoxyribonuclease; h 99.9 2.6E-24 8.8E-29 206.0 14.3 223 193-433 19-259 (259)
14 1zwx_A SMCL, sphingomyelinase- 99.9 1.9E-24 6.6E-29 212.4 13.3 213 188-430 32-300 (301)
15 3g91_A MTH0212, exodeoxyribonu 99.9 4.4E-24 1.5E-28 206.7 14.7 222 193-432 21-259 (265)
16 1vyb_A ORF2 contains A reverse 99.9 2.1E-23 7.1E-28 196.9 17.3 211 190-429 23-238 (238)
17 1hd7_A DNA-(apurinic or apyrim 99.9 7.1E-24 2.4E-28 211.7 14.0 219 194-430 80-318 (318)
18 2o3h_A DNA-(apurinic or apyrim 99.9 3.8E-23 1.3E-27 201.8 18.3 219 194-430 47-285 (285)
19 2ddr_A Sphingomyelin phosphodi 99.9 1.7E-22 5.7E-27 198.8 16.5 129 189-323 32-200 (306)
20 1wdu_A TRAS1 ORF2P; four-layer 99.9 1.3E-21 4.5E-26 187.3 19.0 208 189-431 32-244 (245)
21 3i41_A Beta-hemolysin; beta to 99.9 7.4E-22 2.5E-26 197.3 17.3 135 188-326 51-222 (317)
22 3ngq_A CCR4-NOT transcription 99.9 1.2E-20 4E-25 194.6 18.8 165 149-326 31-261 (398)
23 4b8c_D Glucose-repressible alc 99.8 9.2E-22 3.1E-26 217.8 1.3 229 186-433 422-720 (727)
24 2f1n_A CDT B, cytolethal diste 99.8 3.8E-20 1.3E-24 177.7 6.2 126 193-326 37-193 (262)
25 2ei9_A Non-LTR retrotransposon 99.8 1.6E-18 5.5E-23 166.9 17.2 197 188-432 19-221 (240)
26 2a40_B Deoxyribonuclease-1; WA 99.7 8.5E-18 2.9E-22 162.6 14.5 202 193-428 20-259 (260)
27 1sr4_B CDT B, cytolethal diste 99.7 1.3E-17 4.6E-22 161.4 15.3 143 176-324 8-183 (261)
28 2imq_X Salivary nitrophorin; f 99.6 1.3E-15 4.3E-20 150.2 14.8 228 197-431 31-281 (282)
29 1i9z_A Synaptojanin, phosphati 99.6 8.1E-14 2.8E-18 141.0 21.7 234 194-437 43-322 (347)
30 2xsw_A 72 kDa inositol polypho 99.6 1.1E-13 3.9E-18 140.4 19.3 225 200-434 55-324 (357)
31 4a9c_A Phosphatidylinositol-3, 99.2 6E-10 2.1E-14 110.8 18.2 226 201-431 46-312 (316)
32 3mtc_A Type II inositol-1,4,5- 99.2 1.5E-09 5.2E-14 107.7 19.0 235 194-435 26-306 (313)
No 1
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.95 E-value=1.3e-27 Score=243.96 Aligned_cols=204 Identities=19% Similarity=0.122 Sum_probs=146.2
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecCCCCeeEEEEEeccceeeEEEe--ccCCC
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQK--IADDK 265 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~~~~~GvAIlSR~Pi~~~~~~~--l~~~~ 265 (461)
..+...|+++|++++|||||||||... ++..|....++++.|.....+.+|++||+|.|+....... .+...
T Consensus 136 ~~R~~~I~~~I~~~~PDIV~LQEv~~~------~~~~l~~~~~~y~~~~~~~~~~~G~aIlsk~~i~~~~~~~~~~~~~~ 209 (362)
T 4gew_A 136 LTRMKAVAHIVKNVNPDILFLQEVVDR------DLAPIDKLQSLYKIYYSNKGCQYYTAILVSKMFDVEKHDVIHFQNSG 209 (362)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECST------TCHHHHGGGGTEEEEESSTTSSSEEEEEEETTEEEEEEEEEECTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCChh------HhHHHHHhcCCceEEeCCCCCCceEEEEEeccCccccccccCCCCCc
Confidence 467889999999999999999999644 2344554444444455455678999999998876554433 34445
Q ss_pred CCceEEEEEEEcCCCcEEEEEEecCCCC--CHHHHHHHHHHHHh--------cCCCCEEEEecCCCCCCCCChhhHHHHH
Q 012520 266 DFRNVLKATVDVPWAGEVNVDSTQLDHL--NEKWRMKQICAIIQ--------SNDSPHILAGGLNSLDGSDYSAERWMDI 335 (461)
Q Consensus 266 ~~R~~i~a~i~l~gg~~v~v~ntHL~~~--~~~~R~~Ql~~Ll~--------~~~~PvIL~GDFNs~~~s~~~~~~~~~i 335 (461)
..|.++.+.+.++| ..|.|+|+||.+. ....|..|+..++. ..+.|+|||||||..+.+..
T Consensus 210 ~~r~~l~~~i~~~g-~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~-------- 280 (362)
T 4gew_A 210 MYRTLQILEGSIGG-LKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVS-------- 280 (362)
T ss_dssp SCCEEEEEEEEETT-EEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCC--------
T ss_pred ccceEEEEEEEECC-EEEEEEEecCCccccchhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccc--------
Confidence 67888999999877 8999999999875 34567788776643 24689999999998776531
Q ss_pred HHhhhhcCCCChhHHHHHHHhcCCceeeecccCCCC---ceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEE
Q 012520 336 VKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECE---PVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSV 412 (461)
Q Consensus 336 ~~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~---~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~v 412 (461)
....||.|+|+..+... +|+|...+........++.||||||+++. +.+.++++
T Consensus 281 -------------------~~~~gl~Da~~~~~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~----l~~~~~~v 337 (362)
T 4gew_A 281 -------------------RVPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP----LDKVKFTL 337 (362)
T ss_dssp -------------------CCCTTCEEHHHHTTCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEESS----CCEEEEEE
T ss_pred -------------------hhcchHHHHHHHhCCCCCCCcCcccccCcccccCCCCCcceEEEEEcCC----cceeEEEE
Confidence 02358999998776432 34444554433333445689999999998 56667766
Q ss_pred cCC-------CCCCCccceEEEEE
Q 012520 413 ISS-------KGTSDHHIVKVDVT 429 (461)
Q Consensus 413 i~~-------~~~SDH~PV~ad~~ 429 (461)
+.. .++|||+||+++|.
T Consensus 338 i~~~ri~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 338 EGRQRIRSCLCFPSDHWAINATFF 361 (362)
T ss_dssp ECCSCCTTTSSCSCSSCEEEEEEE
T ss_pred EeeeecCCCCCCCCcccCEEEEEc
Confidence 531 24799999999996
No 2
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.95 E-value=4.2e-27 Score=226.27 Aligned_cols=207 Identities=18% Similarity=0.190 Sum_probs=152.4
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecC--CCCeeEEEEEe---ccceeeEEEecc
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESW--APEYGNAILSK---WPIKRWKVQKIA 262 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~--~~~~GvAIlSR---~Pi~~~~~~~l~ 262 (461)
..+.+.|+++|++++|||||||||.. .++..|.+.++|.+...... .+.+|++|++| +|+.......++
T Consensus 21 ~~r~~~i~~~i~~~~~DIv~LQEv~~------~~~~~l~~~l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~ 94 (257)
T 3l1w_A 21 SFRKEAVCQLINFHDWSLCCIQEVRP------NQVRDLKAYTTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLS 94 (257)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECH------HHHHHHHHHSSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCH------HHHHHHHhcCCCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECc
Confidence 36788999999999999999999964 35667777778876644332 36789999998 888888777664
Q ss_pred C-----C-----CCCceEEEEEEEcCC-CcEEEEEEecCCCCCHHHHHHHHHHHHhcC-----CCCEEEEecCCCCCCCC
Q 012520 263 D-----D-----KDFRNVLKATVDVPW-AGEVNVDSTQLDHLNEKWRMKQICAIIQSN-----DSPHILAGGLNSLDGSD 326 (461)
Q Consensus 263 ~-----~-----~~~R~~i~a~i~l~g-g~~v~v~ntHL~~~~~~~R~~Ql~~Ll~~~-----~~PvIL~GDFNs~~~s~ 326 (461)
. + ..+|.++.+.++... |..+.|+|+|+++.....|..|+..|++.. ..|+|||||||+.+++.
T Consensus 95 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~~~~~~ 174 (257)
T 3l1w_A 95 ETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHISAHARLAGMTVILEELHDKIAQYPTLLMGDFNAESGEE 174 (257)
T ss_dssp SSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSCHHHHHHHHHHHHHHTHHHHHHSCEEEEEECCCCTTSH
T ss_pred CCCCcccccccccccceeEEEEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHcCCCCEEEEeeCCCCCCcH
Confidence 2 1 458889999999863 689999999999877888999998886532 23999999999987763
Q ss_pred ChhhHHHHHHHhhhhcCCCChhHHHHHHHhcCCceeeecccCC-CCceEeecCCccccCCCCCCCceEEEEECCCCCCce
Q 012520 327 YSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGE-CEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKF 405 (461)
Q Consensus 327 ~~~~~~~~i~~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~-~~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~ 405 (461)
.++.|. .+|.|+|...++ +...+|+..... .....+.||||||+ ++ +
T Consensus 175 ------------------------~~~~l~-~~l~d~~~~~~~~~~~~t~~~~~~~--~~~~~~~riD~i~~-~~----~ 222 (257)
T 3l1w_A 175 ------------------------VHQLVQ-KKFQDSKNLATHYGPRGTFQNFTYT--KPWAELEEIDYIYV-KG----W 222 (257)
T ss_dssp ------------------------HHHHHT-TTCEEGGGTSEEESCSCCBCTTCTT--CCGGGCBCCEEEEE-ES----E
T ss_pred ------------------------HHHHhh-hhccchhhhhcccCCCCcccCCccc--CCCCCCCceeEEEE-CC----c
Confidence 233343 389999876542 222334322110 00112489999999 65 7
Q ss_pred eeeEEEEcCCC----CCCCccceEEEEEecC
Q 012520 406 VPGSYSVISSK----GTSDHHIVKVDVTKVS 432 (461)
Q Consensus 406 ~v~s~~vi~~~----~~SDH~PV~ad~~l~~ 432 (461)
.+.+++++... .+|||+||+++|.+.+
T Consensus 223 ~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 223 QVQQTASLTDSIDGRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp EEEEEEECCCCBTTBCSSSBCCEEEEEEEC-
T ss_pred EEEEEEEeccCcCCcccCCcceEEEEEEEEe
Confidence 88899887642 5899999999999875
No 3
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.95 E-value=9.7e-28 Score=230.73 Aligned_cols=215 Identities=17% Similarity=0.162 Sum_probs=151.1
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCC-------cc-----hHHHHHHHh--CCcEEEEe---c-CCCCeeEEEEE
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEEND-------MK-----PLSDLAAAL--GMKYVFAE---S-WAPEYGNAILS 249 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~-------~~-----~l~~L~~~~--g~~~~f~~---~-~~~~~GvAIlS 249 (461)
..+.+.|+++|++++|||||||||....... .+ ..+.|.+.. +|.+.+.. . ..+.+|++|||
T Consensus 20 ~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~g~ails 99 (266)
T 3teb_A 20 MEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSNSHIGFGKYNEGVAVIT 99 (266)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEEEEECSTTEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEeccccCccccCCeEEEEE
Confidence 4688899999999999999999997542110 00 235555433 24443221 1 23467999999
Q ss_pred eccceeeEEEeccC-----CCCCceEEEEEEEcCCCcEEEEEEecCCCC--CHHHHHHHHHHHHhcC--CCCEEEEecCC
Q 012520 250 KWPIKRWKVQKIAD-----DKDFRNVLKATVDVPWAGEVNVDSTQLDHL--NEKWRMKQICAIIQSN--DSPHILAGGLN 320 (461)
Q Consensus 250 R~Pi~~~~~~~l~~-----~~~~R~~i~a~i~l~gg~~v~v~ntHL~~~--~~~~R~~Ql~~Ll~~~--~~PvIL~GDFN 320 (461)
|+|+.......++. +.+.|.++.++++.++ ..+.|+++|+.+. ....|..|++.|++.. +.|+|||||||
T Consensus 100 r~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~~~~~il~GDfN 178 (266)
T 3teb_A 100 RHKIKAEDEFYCTFAQSVRTISARRIVSITINYEG-QDIEFYSCHMNLPNCETEDMGKNIQTILNRTQNSNLKILMGDFN 178 (266)
T ss_dssp SSCCSEEEEEECSSCCCTTCTTCCEEEEEEEEETT-EEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCSCCEEEEEEECC
T ss_pred CceecCceeEEeCCCCCCCCcccceEEEEEEEeCC-eEEEEEEecCCCccCChHHHHHHHHHHHHHHhcCCcEEEEeECC
Confidence 99998888777763 2356889999999876 8999999999875 4567999999998765 68999999999
Q ss_pred CCCCCCChhhHHHHHHHhhhhcCCCChhHHHHHHHhcCCceeeecccCCC-CceEeecCCccccCCCCCCCceEEEEECC
Q 012520 321 SLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGEC-EPVVIIAKGQNVQGTCKYGTRVDYILASP 399 (461)
Q Consensus 321 s~~~s~~~~~~~~~i~~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~-~~tt~~~~g~~~~~t~~~~~RIDyIf~S~ 399 (461)
+.+... .+.++.|.+.||.|+|+..++. ...+|...... +.....+.||||||+++
T Consensus 179 ~~~~~~----------------------~~~~~~l~~~~l~d~~~~~~~~~~~~t~~~~~~~-~~~~~~~~riD~i~~s~ 235 (266)
T 3teb_A 179 TDAIGN----------------------VAAYENILSQGLFDTYVMAEKKDDGITVDKSIHG-WDNDKAKKRLDYIFSNK 235 (266)
T ss_dssp CCTTTC----------------------HHHHHHHHTTTCEEHHHHCSEECCCCCEECC-------CTTEECCEEEEESS
T ss_pred CCCCCC----------------------CcHHHhhccccccchHHhhccccCCccccCccCC-cCcCCcCCeeEEEEeCC
Confidence 987321 1234455567899999866532 22333221111 11223568999999999
Q ss_pred CCCCceeeeEEEEcCC----CCCCCccceEEEEEe
Q 012520 400 DSPYKFVPGSYSVISS----KGTSDHHIVKVDVTK 430 (461)
Q Consensus 400 ~~~~~~~v~s~~vi~~----~~~SDH~PV~ad~~l 430 (461)
+ +.+..+.++.. ...|||+||+++|.+
T Consensus 236 ~----~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 236 E----LKVKESKVIFNNKNKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp C----CCEEEEEEESSSSSSCCCSSSCEEEEEECC
T ss_pred C----eEEEEEEEEeCCCCCCCcCCccCEEEEEEC
Confidence 7 56778888753 367999999999864
No 4
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.95 E-value=3.8e-27 Score=224.01 Aligned_cols=204 Identities=19% Similarity=0.132 Sum_probs=143.5
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecCCCCeeEEEEEeccceeeEEE--eccCCC
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQ--KIADDK 265 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~~~~~GvAIlSR~Pi~~~~~~--~l~~~~ 265 (461)
..+.+.|+++|++++|||||||||... ++..|....++.+.+.....+.+|++|+++.++...... .++...
T Consensus 30 ~~r~~~i~~~i~~~~pDIi~LQEv~~~------~~~~l~~~~~~~~~~~~~~~~~~g~~il~~~~~~~~~~~~~~~~~~~ 103 (256)
T 4fva_A 30 LTRMKAVAHIVKNVNPDILFLQEVVDR------DLAPIDKLQSLYKIYYSNKGCQYYTAILVSKMFDVEKHDVIHFQNSG 103 (256)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECST------TCHHHHGGGGTEEEEESSTTSSSEEEEEEETTCEEEEEEEEECTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecChh------HhHHHHHhcCCceEeecCCCCCcceEEEEeecccceecccccCCCCc
Confidence 467889999999999999999999654 235566556665555555667889999999776654443 344445
Q ss_pred CCceEEEEEEEcCCCcEEEEEEecCCCCC--HHHHHHHHHHHHh--------cCCCCEEEEecCCCCCCCCChhhHHHHH
Q 012520 266 DFRNVLKATVDVPWAGEVNVDSTQLDHLN--EKWRMKQICAIIQ--------SNDSPHILAGGLNSLDGSDYSAERWMDI 335 (461)
Q Consensus 266 ~~R~~i~a~i~l~gg~~v~v~ntHL~~~~--~~~R~~Ql~~Ll~--------~~~~PvIL~GDFNs~~~s~~~~~~~~~i 335 (461)
..+..+.+.+.+++ ..+.|+|+|+.+.. ...|..|+..+++ ..+.|+|+|||||..+.+..
T Consensus 104 ~~~~~~~~~~~~~g-~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~-------- 174 (256)
T 4fva_A 104 MYRTLQILEGSIGG-LKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVS-------- 174 (256)
T ss_dssp SCCEEEEEEEEETT-EEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCC--------
T ss_pred ccceeEEEEEEeCC-eEEEEEEecCCCCCcchHHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhh--------
Confidence 56778888998887 89999999998753 4456667665532 24689999999998765431
Q ss_pred HHhhhhcCCCChhHHHHHHHhcCCceeeecccCCCC--ceEee-cCCccccCCCCCCCceEEEEECCCCCCceeeeEEEE
Q 012520 336 VKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECE--PVVII-AKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSV 412 (461)
Q Consensus 336 ~~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~--~tt~~-~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~v 412 (461)
....++.|+|+..+... ..||. ..+........+..||||||++++ +.+.++++
T Consensus 175 -------------------~~~~~~~d~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~----~~~~~~~~ 231 (256)
T 4fva_A 175 -------------------RVPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP----LDKVKFTL 231 (256)
T ss_dssp -------------------CCCTTCEEHHHHTTCCGGGCCSEETTTCCSSCSCCSCEECCEEEEEESS----CCEEEEEE
T ss_pred -------------------hhhcchhhHHHHhCCCCCCCcccccccCcccccCCCCCcCeEEEEEcCC----ceeeEEEE
Confidence 01357889887765432 23443 333332233345679999999998 56667776
Q ss_pred cCC-------CCCCCccceEEEEE
Q 012520 413 ISS-------KGTSDHHIVKVDVT 429 (461)
Q Consensus 413 i~~-------~~~SDH~PV~ad~~ 429 (461)
+.. .++|||+||+++|+
T Consensus 232 ~~~~~~~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 232 EGRQRIRSCLCFPSDHWAINATFF 255 (256)
T ss_dssp ECCSCCTTTCSCSCSSCEEEEEEE
T ss_pred EeeEecCCCCCCcCcccCEEEEEc
Confidence 532 24699999999996
No 5
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.94 E-value=2.5e-26 Score=222.31 Aligned_cols=209 Identities=17% Similarity=0.189 Sum_probs=151.0
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHh-CCcEEEEecC---CCCeeEEEE---EeccceeeEEEe
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAAL-GMKYVFAESW---APEYGNAIL---SKWPIKRWKVQK 260 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~-g~~~~f~~~~---~~~~GvAIl---SR~Pi~~~~~~~ 260 (461)
..+.+.|+++|++++||||||||+.. +++..|.+.+ +|.|...... ....|++|+ ||+|+.......
T Consensus 24 ~~r~~~i~~~i~~~~~DIv~LQEv~~------~~~~~l~~~l~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~ 97 (267)
T 3g6s_A 24 QYRKDRVCQFIKDHELDIVGMQEVLH------NQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFW 97 (267)
T ss_dssp GGTHHHHHHHHHHTTCSEEEEESBCH------HHHHHHHHHCTTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCH------HHHHHHHHhccCCcEEEecCCCCCcCCceeEEEEEccceEEEecccEe
Confidence 46889999999999999999999963 3566677664 5555332221 133458999 889999888776
Q ss_pred ccC-----------CCCCceEEEEEEEcC-CCcEEEEEEecCCCCCHHHHHHHHHHHHhc-----CCCCEEEEecCCCCC
Q 012520 261 IAD-----------DKDFRNVLKATVDVP-WAGEVNVDSTQLDHLNEKWRMKQICAIIQS-----NDSPHILAGGLNSLD 323 (461)
Q Consensus 261 l~~-----------~~~~R~~i~a~i~l~-gg~~v~v~ntHL~~~~~~~R~~Ql~~Ll~~-----~~~PvIL~GDFNs~~ 323 (461)
++. ...+|.++.+.++.. +|..+.|+++|+.+.....|..|++.|++. .+.|+|||||||+.+
T Consensus 98 l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~~~ 177 (267)
T 3g6s_A 98 LAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGEEARRQSALLIIRKIKEIVGERPAVVTGDFNVTD 177 (267)
T ss_dssp SSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCHHHHHHHHHHHHHHHHHHTTTSCEEEEEECSSCT
T ss_pred cCCCCCccccccccccCcceEEEEEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCC
Confidence 642 135788999999863 358999999999987788898888877542 268999999999987
Q ss_pred CCCChhhHHHHHHHhhhhcCCCChhHHHHHHHhcCC--ceeeecccCC--CCceEeecCCccccCCCCCCCceEEEEECC
Q 012520 324 GSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIE--YVDSKEFAGE--CEPVVIIAKGQNVQGTCKYGTRVDYILASP 399 (461)
Q Consensus 324 ~s~~~~~~~~~i~~~~~~~~~~~p~~~v~~~L~~~g--l~Da~~~~~~--~~~tt~~~~g~~~~~t~~~~~RIDyIf~S~ 399 (461)
++. .++.|.+.| |.|+|...+. +...||+..++. ....+.||||||+++
T Consensus 178 ~~~------------------------~~~~l~~~~~~l~d~~~~~~~~~~~~~T~~~~~~~---~~~~~~riD~I~~s~ 230 (267)
T 3g6s_A 178 ASD------------------------AYETITTNEFVMKDAYKTAARVTGVDYTFHDFARI---PAEDCEKIDFIFVTP 230 (267)
T ss_dssp TSH------------------------HHHHHHSSSSCCEEHHHHCSEEEECSCSBCTTTTS---CGGGCCCCEEEEECT
T ss_pred CCH------------------------HHHHhhcCCcchhhhHhhhccccCCCCCEeCCCCC---CCCCCCcEeEEEeCC
Confidence 764 344455555 9999876542 122344332210 012458999999999
Q ss_pred CCCCceeeeEEEEcCCC---CCCCccceEEEEEecCc
Q 012520 400 DSPYKFVPGSYSVISSK---GTSDHHIVKVDVTKVSE 433 (461)
Q Consensus 400 ~~~~~~~v~s~~vi~~~---~~SDH~PV~ad~~l~~e 433 (461)
+ +.+.+++++... .+|||+||++++.....
T Consensus 231 ~----~~~~~~~v~~~~~~~~~SDH~PV~a~~~~~~~ 263 (267)
T 3g6s_A 231 Q----VLVKSCEIPAEVPEALLSDHNPQLADLELEHH 263 (267)
T ss_dssp T----SEEEEEEECCCCSSSCCCSBCCEEEEEEEC--
T ss_pred C----ceEEEEEEecCCCCCCCCCcccEEEEEEeccc
Confidence 8 788899998764 47999999999987653
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.94 E-value=9.7e-26 Score=213.94 Aligned_cols=211 Identities=19% Similarity=0.204 Sum_probs=135.3
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecCCCCeeEEEEEec-cceee--EEEeccCC
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKW-PIKRW--KVQKIADD 264 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~~~~~GvAIlSR~-Pi~~~--~~~~l~~~ 264 (461)
..+.+.|+++|++++|||||||||.. .++..|.+..++.+.+.....+.+| +++++. ++... .....+..
T Consensus 26 ~~r~~~i~~~i~~~~pDIi~LQEv~~------~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~ 98 (256)
T 4gz1_A 26 PERARGVCSCLALYSPDVVFLQEVIP------PYCAYLKKRAASYTIITGNEEGYFT-AILLKKGRVKFKSQEIIPFPNT 98 (256)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECH------HHHHHHHHHCTTEEEEESCSSSSEE-EEEEETTTEEEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCH------HHHHHHHhhccccceeeccccCCce-EEEEEeccccceecccccCCcc
Confidence 46788999999999999999999953 3567777665554433333334444 555553 33322 22333344
Q ss_pred CCCceEEEEEEEcCCCcEEEEEEecCCCC--CHHHHHHHHHHHHhc-----CCCCEEEEecCCCCCCCCChhhHHHHHHH
Q 012520 265 KDFRNVLKATVDVPWAGEVNVDSTQLDHL--NEKWRMKQICAIIQS-----NDSPHILAGGLNSLDGSDYSAERWMDIVK 337 (461)
Q Consensus 265 ~~~R~~i~a~i~l~gg~~v~v~ntHL~~~--~~~~R~~Ql~~Ll~~-----~~~PvIL~GDFNs~~~s~~~~~~~~~i~~ 337 (461)
...+.++.+.+..++ ..+.|+|+|+.+. ....|..|+..+++. .+.|+|||||||+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~-~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~----------- 166 (256)
T 4gz1_A 99 KMMRNLLCVNVSLGG-NEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEV----------- 166 (256)
T ss_dssp SSCCEEEEEEEEETT-EEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHHH-----------
T ss_pred cccceEEEEEEEeCC-EEEEEEeecccccccchhhhhHHHHHHhhhhhhccCcceEEEeCccCCCcchh-----------
Confidence 456778888888877 8999999999874 345677888777542 367999999999864431
Q ss_pred hhhhcCCCChhHHHHHHHhcCCceeeecccCCCC--ceEee-cCCccccCCCCCCCceEEEEECCCCCCceeeeEEEEcC
Q 012520 338 YYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECE--PVVII-AKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVIS 414 (461)
Q Consensus 338 ~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~--~tt~~-~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~vi~ 414 (461)
....+...++.|+|...+... ..+|. ..+.........+.||||||+++... .+.+.+++++.
T Consensus 167 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~-~~~~~~~~~~~ 232 (256)
T 4gz1_A 167 -------------IKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEG-HLIPQSLDLVG 232 (256)
T ss_dssp -------------HHHTCSCTTEEEHHHHTTCCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-C-SEEEEEEEEEC
T ss_pred -------------hhhhhccchhhhHHHHhcCCCCCCcccccCCCCccccCCCCCccEEEEEEECCcc-ceeeeEEEEEe
Confidence 111123457888877654322 12232 22222222334568999999997642 25556666653
Q ss_pred C------CCCCCccceEEEEEec
Q 012520 415 S------KGTSDHHIVKVDVTKV 431 (461)
Q Consensus 415 ~------~~~SDH~PV~ad~~l~ 431 (461)
. ..+|||+||+++|.+.
T Consensus 233 ~~~~~~~~~~SDH~pv~a~~~iv 255 (256)
T 4gz1_A 233 LEKLDCGRFPSDHWGLLCTLNVV 255 (256)
T ss_dssp CSCCTTSSCSCSBCEEEEEEEEC
T ss_pred ccccCCCCCCCccccEEEEEEEE
Confidence 2 2479999999999873
No 7
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.94 E-value=8.7e-26 Score=211.31 Aligned_cols=211 Identities=19% Similarity=0.145 Sum_probs=141.6
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecCCCCeeEEEEEe--ccceeeEEEeccCCC
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSK--WPIKRWKVQKIADDK 265 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~~~~~GvAIlSR--~Pi~~~~~~~l~~~~ 265 (461)
..+.+.|+++|++++|||||||||.. .++..+...+++.+.+.....+.+|.+++++ +++.......++...
T Consensus 20 ~~r~~~i~~~i~~~~pDIi~LQEv~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (250)
T 4f1h_A 20 ADRARGLCSYLALYTPDVVFLQELIP------AYVQYLKKRAVSYLFFEGSDDGYFTGIMLRKSRVKFLESEIICFPTTQ 93 (250)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECH------HHHHHHHHHCTTEEEEESCSSSSEEEEEEETTTCEEEEEEEEECTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCH------HHHHHHHHhccCceeecccccccCceeEEeeccccceecccccccCcc
Confidence 45788999999999999999999953 3567777777776666655556667777654 666666556666555
Q ss_pred CCceEEEEEEEcCCCcEEEEEEecCCCC--CHHHHHHHHHHHHhc-----CCCCEEEEecCCCCCCCCChhhHHHHHHHh
Q 012520 266 DFRNVLKATVDVPWAGEVNVDSTQLDHL--NEKWRMKQICAIIQS-----NDSPHILAGGLNSLDGSDYSAERWMDIVKY 338 (461)
Q Consensus 266 ~~R~~i~a~i~l~gg~~v~v~ntHL~~~--~~~~R~~Ql~~Ll~~-----~~~PvIL~GDFNs~~~s~~~~~~~~~i~~~ 338 (461)
..+.++.+.+...+ ..+.|+++|+.+. ....|..|+..+++. ...|+|||||||+.+.+.
T Consensus 94 ~~~~~~~~~~~~~~-~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~------------ 160 (250)
T 4f1h_A 94 MMRNLLIAQVTFSG-QKLYLMTSHLESCKNQSQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEV------------ 160 (250)
T ss_dssp SCCEEEEEEEEETT-EEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHSCTTEEEEEEEECCCCHHHH------------
T ss_pred ccceEEEEEEecCC-cEEEEeccccccccccHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCcch------------
Confidence 66778888888877 8999999999874 345778888877642 356999999999864321
Q ss_pred hhhcCCCChhHHHHHHHhcCCceeeecccCCCCc--eEee-cCCccccCCCCCCCceEEEEECCCCCC-ceeeeEEEEcC
Q 012520 339 YEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEP--VVII-AKGQNVQGTCKYGTRVDYILASPDSPY-KFVPGSYSVIS 414 (461)
Q Consensus 339 ~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~~--tt~~-~~g~~~~~t~~~~~RIDyIf~S~~~~~-~~~v~s~~vi~ 414 (461)
....+...++.|+|...+.... .+|. ..+.........+.||||||+++.... .+.+..+.++.
T Consensus 161 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~ 228 (250)
T 4f1h_A 161 ------------ANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAPPVTPDHMALIG 228 (250)
T ss_dssp ------------HTTTSSCTTEEEHHHHTTCCGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSCCCEEEEEEEEC
T ss_pred ------------hhhhhccccchHHHHHhcCCccCCcccccccCCCCCcCCCCCccEEEEEEeCcccccceeeeEEEEec
Confidence 0001124467777766554332 2232 222221222345689999999986432 23444555443
Q ss_pred ------CCCCCCccceEEEEE
Q 012520 415 ------SKGTSDHHIVKVDVT 429 (461)
Q Consensus 415 ------~~~~SDH~PV~ad~~ 429 (461)
...+|||+||+++|.
T Consensus 229 ~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 229 MEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp CSCCTTSSCSCSBCEEEEEEE
T ss_pred ccccCCCCCCCcccCEEEEEe
Confidence 124799999999985
No 8
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.7e-25 Score=219.67 Aligned_cols=209 Identities=21% Similarity=0.166 Sum_probs=150.4
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecC--C--CCeeEEEE---EeccceeeEEEe
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESW--A--PEYGNAIL---SKWPIKRWKVQK 260 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~--~--~~~GvAIl---SR~Pi~~~~~~~ 260 (461)
..+.+.|+++|++.+|||||||||.. +++..|.+.++.+.+++... + ...+++|| ||+|+.......
T Consensus 29 ~~r~~~i~~~i~~~~~DIv~LQEv~~------~~~~~l~~~l~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~ 102 (298)
T 3mpr_A 29 GQRYPVIAQMVQYHDFDIFGTQECFL------HQLKDMKEALPGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFW 102 (298)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESBCH------HHHHHHHHHSTTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCH------HHHHHHHHhCCCCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEE
Confidence 46789999999999999999999963 35677777664322222221 1 23458999 899999888877
Q ss_pred ccCC----------CCCceEEEEEEEc-CCCcEEEEEEecCCCCCHHHHHHHHHHHHhc-------CCCCEEEEecCCCC
Q 012520 261 IADD----------KDFRNVLKATVDV-PWAGEVNVDSTQLDHLNEKWRMKQICAIIQS-------NDSPHILAGGLNSL 322 (461)
Q Consensus 261 l~~~----------~~~R~~i~a~i~l-~gg~~v~v~ntHL~~~~~~~R~~Ql~~Ll~~-------~~~PvIL~GDFNs~ 322 (461)
++.. ..+|.++++.++. .+|+.|.|+|+|+.+.....|..|+..|++. .+.|+|||||||+.
T Consensus 103 l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~ 182 (298)
T 3mpr_A 103 LSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIGKKARVESAFLVQEKMKELGRGKNLPAILTGDFNVD 182 (298)
T ss_dssp SSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCHHHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSC
T ss_pred ccCCCCccCcccccccCceeEEEEEEEcCCCCEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Confidence 6521 2468889999985 3458999999999987888999998887542 36799999999998
Q ss_pred CCCCChhhHHHHHHHhhhhcCCCChhHHHHHHHhcCC-ceeeecccCC--CCceEeecCCccccCCCCCCCceEEEEECC
Q 012520 323 DGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIE-YVDSKEFAGE--CEPVVIIAKGQNVQGTCKYGTRVDYILASP 399 (461)
Q Consensus 323 ~~s~~~~~~~~~i~~~~~~~~~~~p~~~v~~~L~~~g-l~Da~~~~~~--~~~tt~~~~g~~~~~t~~~~~RIDyIf~S~ 399 (461)
+++. .++.|.+.| |.|+|...+. +...||+..+. ......||||||+++
T Consensus 183 ~~~~------------------------~~~~l~~~g~l~D~~~~~~~~~~~~~T~~~~~~----~~~~~~rID~Il~s~ 234 (298)
T 3mpr_A 183 QTHQ------------------------SYDAFVSKGVLCDSYEKCDYRYALNGTFNNFDP----NSFTESRIDHIFVSP 234 (298)
T ss_dssp TTSH------------------------HHHHHHTTSSSEEHHHHCSEEECSSCSBCTTCT----TCCCSCCCEEEEECT
T ss_pred CCCH------------------------HHHHHhcCCcchhhHhhhcccCCCCCCccCCCC----CCCCCceEEEEEeCC
Confidence 8764 344455444 9999876542 22234432211 122578999999998
Q ss_pred CCCCceeeeEEEEcCCC----------------------------CCCCccceEEEEEecCcc
Q 012520 400 DSPYKFVPGSYSVISSK----------------------------GTSDHHIVKVDVTKVSEN 434 (461)
Q Consensus 400 ~~~~~~~v~s~~vi~~~----------------------------~~SDH~PV~ad~~l~~e~ 434 (461)
+ +.+.+++++... ..|||+||++++...-|.
T Consensus 235 ~----~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~~~~ 293 (298)
T 3mpr_A 235 S----FHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFDLEH 293 (298)
T ss_dssp T----SEEEEEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEEEECSSC
T ss_pred C----eeEEEEEEecCccccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEEecchhh
Confidence 8 678888886431 359999999999876654
No 9
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.93 E-value=2.2e-26 Score=221.43 Aligned_cols=227 Identities=18% Similarity=0.180 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecCCCCeeEEEEEeccceeeEEEeccCC--CC
Q 012520 189 KCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADD--KD 266 (461)
Q Consensus 189 ~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~~~~~GvAIlSR~Pi~~~~~~~l~~~--~~ 266 (461)
.+.+.|+++|++.+||||||||+....... ...+....||.+.+.. ..+.+|++|+||+|+..... .++.. ..
T Consensus 13 ~~~~~i~~~i~~~~~Dii~LQE~~~~~~~~---~~~~l~~~gy~~~~~~-~~~~~G~ailsr~~~~~~~~-~~~~~~~~~ 87 (268)
T 1ako_A 13 ARPHQLEAIVEKHQPDVIGLQETKVHDDMF---PLEEVAKLGYNVFYHG-QKGHYGVALLTKETPIAVRR-GFPGDDEEA 87 (268)
T ss_dssp GCHHHHHHHHHHHCCSEEEEECCCCCGGGC---CHHHHHHTTCEEEEEE-ETTEEEEEEEESSCCSEEEE-SSTTCCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCChhhC---CHhHhccCCCcEEEeC-CCCcceEEEEEecCcceeee-CCCCccccc
Confidence 467789999999999999999998653221 1223335688877654 34678999999999876543 23221 23
Q ss_pred CceEEEEEEEcCCCcEEEEEEecCCCCCH-------HHHHHHHHHHHh------cCCCCEEEEecCCCCCCCCChh----
Q 012520 267 FRNVLKATVDVPWAGEVNVDSTQLDHLNE-------KWRMKQICAIIQ------SNDSPHILAGGLNSLDGSDYSA---- 329 (461)
Q Consensus 267 ~R~~i~a~i~l~gg~~v~v~ntHL~~~~~-------~~R~~Ql~~Ll~------~~~~PvIL~GDFNs~~~s~~~~---- 329 (461)
.+.++.+++.+++ +.+.|+|+|+.+... ..|..|++.|.+ ..+.|+|||||||+.+.+.+..
T Consensus 88 ~~~~~~~~~~~~~-~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~ 166 (268)
T 1ako_A 88 QRRIIMAEIPSLL-GNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEE 166 (268)
T ss_dssp HTTEEEEEEEETT-EEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHH
T ss_pred CCCEEEEEEEcCC-CeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCccc
Confidence 4668999999887 799999999986431 356677766643 2468999999999988764211
Q ss_pred --hHHHHHHHhhhhcCCCChhHHHHHHHhcCCceeeecccCCC---CceEeecCCccccCCCCCCCceEEEEECCCCCCc
Q 012520 330 --ERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGEC---EPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYK 404 (461)
Q Consensus 330 --~~~~~i~~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~---~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~ 404 (461)
..|... ...+....+.+.++.+...||.|+|+..++. .+|+|...+... ....+.||||||+++.+..
T Consensus 167 ~~~~w~~~----~~~~~~~~~~~~~~~l~~~gl~D~~~~~~~~~~~~~T~~~~~~~~~--~~~~~~riD~il~s~~~~~- 239 (268)
T 1ako_A 167 NRKRWLRT----GKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGF--DDNRGLRIDLLLASQPLAE- 239 (268)
T ss_dssp HHHHHHHH----TBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSCCSBCCTTTTHH--HHTCCBCCEEEEEEHHHHT-
T ss_pred ChhhhccC----CCcCcCHHHHHHHHHHhcCCCEEeEhhhCCCCCCCeeEeCCcCCcc--ccCceEEEEEEEeCHHHHH-
Confidence 012110 0111111234566666778999999876653 245554433210 0124689999999987421
Q ss_pred eeeeEEEEcCC----CCCCCccceEEEEE
Q 012520 405 FVPGSYSVISS----KGTSDHHIVKVDVT 429 (461)
Q Consensus 405 ~~v~s~~vi~~----~~~SDH~PV~ad~~ 429 (461)
.+.++.+... ..+|||+||+++|.
T Consensus 240 -~~~~~~i~~~~~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 240 -CCVETGIDYEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp -TEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred -HHHhceechhhcCCCCCCCcccEEEEcc
Confidence 2446666542 26899999999984
No 10
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.93 E-value=9.7e-26 Score=215.48 Aligned_cols=225 Identities=21% Similarity=0.188 Sum_probs=141.2
Q ss_pred hHhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecCCCCeeEEEEEeccceeeEEEeccC---
Q 012520 187 SAKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIAD--- 263 (461)
Q Consensus 187 ~~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~~~~~GvAIlSR~Pi~~~~~~~l~~--- 263 (461)
...+.+.++++|++.+||||||||+....... ...+....||.+.+.. ..+.+|++|+||+|+..... .++.
T Consensus 11 ~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~~~---~~~~~~~~gy~~~~~~-~~~~~G~ailsr~~~~~~~~-~~~~~~~ 85 (256)
T 2jc4_A 11 LNVRLPQVQNLLADNPPDILVLQELKLDQDKF---PAAALQMMGWHCVWSG-QKTYNGVAIVSRSVPQDVHF-GLPALPD 85 (256)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEEECCCSCGGGS---CHHHHHTTTCEEEEEC-CSSSCCEEEEESSCCEEEEE-SCTTSTT
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEeeccchhcC---CHhHHhhcCCeEEECC-CCcceEEEEEECCChHHhee-cCCCCcc
Confidence 34567899999999999999999998763221 1223335688766653 34578999999999986544 2332
Q ss_pred CCCCceEEEEEEEcCCCcEEEEEEecCCCCCH------HHHHHHHHHHHh------cCCCCEEEEecCCCCCCCCChhhH
Q 012520 264 DKDFRNVLKATVDVPWAGEVNVDSTQLDHLNE------KWRMKQICAIIQ------SNDSPHILAGGLNSLDGSDYSAER 331 (461)
Q Consensus 264 ~~~~R~~i~a~i~l~gg~~v~v~ntHL~~~~~------~~R~~Ql~~Ll~------~~~~PvIL~GDFNs~~~s~~~~~~ 331 (461)
....| ++.+++ . .+.|+|+|+.+... ..|..|++.|.+ ..+.|+|||||||+.+++.+..
T Consensus 86 ~~~~~-~~~~~~--~---~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~-- 157 (256)
T 2jc4_A 86 DPQRR-VIAATV--S---GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCY-- 157 (256)
T ss_dssp CCSCC-EEEEEE--T---TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBS--
T ss_pred CCcCc-EEEEEe--C---CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhcc--
Confidence 12334 555554 2 59999999986432 224455555532 1478999999999988753100
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHhcCCceeeecccCCCC--ceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeE
Q 012520 332 WMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECE--PVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGS 409 (461)
Q Consensus 332 ~~~i~~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~--~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s 409 (461)
....+....+......+.++.|...||.|+|+..++.. +|+|...+... ....+.||||||+++++. ..+.+
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~--~~~~~~rID~i~~s~~~~--~~~~~ 231 (256)
T 2jc4_A 158 --DPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMF--QRKLGLRIDHILVSPAMA--AALKD 231 (256)
T ss_dssp --SGGGGTTCTTSCHHHHHHHHHHHTTTCEEHHHHHCCSSCCCCBCCTTTTHH--HHTCCBCCEEEEECHHHH--TTEEE
T ss_pred --ChhHhCCCCCcCHHHHHHHHHHHhcCcEEhhhhhCCCCCceeeEcCCCCcc--ccCcEEEEEEEEECHHHH--hheeE
Confidence 00000011111122344566555789999998766543 44443322110 113468999999998732 12678
Q ss_pred EEEcCC----CCCCCccceEEEEEe
Q 012520 410 YSVISS----KGTSDHHIVKVDVTK 430 (461)
Q Consensus 410 ~~vi~~----~~~SDH~PV~ad~~l 430 (461)
++++.. ..+|||+||+++|.+
T Consensus 232 ~~v~~~~~~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 232 VRVDLETRALERPSDHAPVTAEFDW 256 (256)
T ss_dssp EEECHHHHTSSSCCSBCCEEEEECC
T ss_pred EEEEhhcccCCCCCCcccEEEEecC
Confidence 887653 368999999999864
No 11
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.92 E-value=1.2e-24 Score=208.52 Aligned_cols=223 Identities=17% Similarity=0.094 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecCCCCeeEEEEEeccceeeEEEeccCC--CC
Q 012520 189 KCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADD--KD 266 (461)
Q Consensus 189 ~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~~~~~GvAIlSR~Pi~~~~~~~l~~~--~~ 266 (461)
.+.+.++++|++.+||||||||+........ ...+ ...||.+.+.. ..+.+|+||+||+|+..... .++.. .+
T Consensus 14 ~~~~~i~~~i~~~~~Dii~lQE~~~~~~~~~--~~~~-~~~gy~~~~~~-~~~~~G~ailsr~~~~~~~~-~~~~~~~~~ 88 (257)
T 2voa_A 14 SRLHIVIPWLKENKPDILCMQETKVENRKFP--EADF-HRIGYHVVFSG-SKGRNGVAIASLEEPEDVSF-GLDSEPKDE 88 (257)
T ss_dssp GTHHHHHHHHHHHCCSEEEEECCCCCGGGCC--HHHH-HTTTCEEEEEE-ETTEEEEEEEESSCCEEEEE-SCSSSSCCG
T ss_pred HHHHHHHHHHhhcCCCEEEEEEeecchhhcC--HHHh-hhCCCcEEEcC-CCCccEEEEEEccChHHhee-cCCCCcccc
Confidence 4567899999999999999999976522111 1122 34678766653 34568999999999975432 23321 15
Q ss_pred CceEEEEEEEcCCCcEEEEEEecCCCCCH------HHHHHHHHHHH---hc---CCCCEEEEecCCCCCCCCChhhHHHH
Q 012520 267 FRNVLKATVDVPWAGEVNVDSTQLDHLNE------KWRMKQICAII---QS---NDSPHILAGGLNSLDGSDYSAERWMD 334 (461)
Q Consensus 267 ~R~~i~a~i~l~gg~~v~v~ntHL~~~~~------~~R~~Ql~~Ll---~~---~~~PvIL~GDFNs~~~s~~~~~~~~~ 334 (461)
.| ++.+++ ..+.|+|+|+++... ..|..+++.|. +. .+.|+|||||||+.+.+.+. +..
T Consensus 89 ~r-~l~~~~-----~~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~---~~~ 159 (257)
T 2voa_A 89 DR-LIRAKI-----AGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDV---HSP 159 (257)
T ss_dssp GG-EEEEEE-----TTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGB---SCG
T ss_pred Cc-EEEEEE-----CCEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhc---cCh
Confidence 56 565554 269999999976432 12334444443 22 46899999999988764210 000
Q ss_pred HHHhhhhcCCCChhHHHHHHHhcCCceeeecccCCC--CceEeec-CCccccCCCCCCCceEEEEECCCCCCceeeeEEE
Q 012520 335 IVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGEC--EPVVIIA-KGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYS 411 (461)
Q Consensus 335 i~~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~--~~tt~~~-~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~ 411 (461)
..+....+...+..+.++.+...||.|+|+..++. .+|+|.. .+.. .....+.||||||+++++.. .+.+++
T Consensus 160 -~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~p~~~~~T~~~~~~~~~--~~~~~~~rID~i~~s~~~~~--~~~~~~ 234 (257)
T 2voa_A 160 -DKLKNHVCFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGA--IERGLGWRGDAILATPPLAE--RCVDCY 234 (257)
T ss_dssp -GGCTTSTTTCHHHHHHHHHHHTTTCEEHHHHHSTTCCCCSBCCTTSTTT--TTTTCCBCCEEEEECHHHHT--TEEEEE
T ss_pred -hHhCCCCCCCHHHHHHHHHHHHcCcEeeehhhCCCCCCcceeccccCCc--eecCceEEEEEEEECHHHHh--hhheeE
Confidence 00000011111223455555578999999866553 3454433 2211 11235689999999987321 156777
Q ss_pred EcCC----CCCCCccceEEEEEe
Q 012520 412 VISS----KGTSDHHIVKVDVTK 430 (461)
Q Consensus 412 vi~~----~~~SDH~PV~ad~~l 430 (461)
+... ..+|||+||+++|.+
T Consensus 235 v~~~~~~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 235 ADIKPRLAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp ECCHHHHSSSCCSBCCEEEEECC
T ss_pred eehhhccCCCCCCccCEEEEEeC
Confidence 7653 268999999999864
No 12
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.91 E-value=2e-24 Score=227.10 Aligned_cols=227 Identities=15% Similarity=0.102 Sum_probs=140.2
Q ss_pred HHHHHHHHccCCcEEEEcCccCCccCCcchHH---HHHHHhCCcEEEEec--CCCCeeEEEEEeccce-----eeEEEec
Q 012520 192 RSIAEVLREVDADILSLQDVKAEEENDMKPLS---DLAAALGMKYVFAES--WAPEYGNAILSKWPIK-----RWKVQKI 261 (461)
Q Consensus 192 ~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~---~L~~~~g~~~~f~~~--~~~~~GvAIlSR~Pi~-----~~~~~~l 261 (461)
+.|+++|++++||||||||++.... .+. .|....||.++|... ..+++|+|||||+|+. ......+
T Consensus 169 ~~i~~~I~~~~pDIVcLQEtk~~~~----~~~~~~~la~~~GY~~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~~~~ 244 (467)
T 2j63_A 169 SALRAFMEAEKPDVLCLQETKLNVD----EADANATLGVVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGF 244 (467)
T ss_dssp THHHHHHHHHCCSEEEEECCCCCTT----CHHHHHTSSCCTTEEEEEECCSSSTTSCCEEEEEECCCCCCTSCCEEEESS
T ss_pred HHHHHHHHHcCCCEEEEEecccchh----ccchHHHHhhcCCceEEEecccCCCCcceEEEEEeCCccccccceeeeecc
Confidence 5799999999999999999986521 222 132235776666532 3467899999999984 1111111
Q ss_pred c--------------------CCCCCceEEEEEEEcCCC-----cEEEEEEecCCCCCH-----HHHH----HHHHHHHh
Q 012520 262 A--------------------DDKDFRNVLKATVDVPWA-----GEVNVDSTQLDHLNE-----KWRM----KQICAIIQ 307 (461)
Q Consensus 262 ~--------------------~~~~~R~~i~a~i~l~gg-----~~v~v~ntHL~~~~~-----~~R~----~Ql~~Ll~ 307 (461)
. .+.+.| ++.+++.+.++ ..|.|+|+|+++... ..|. .++...++
T Consensus 245 ~~p~~~~~~~~~gs~~~~~~~~D~egR-~I~a~~~~~g~~~~~~~~~~vinvYlP~~~~~~~r~~~K~~~~~~~L~~~l~ 323 (467)
T 2j63_A 245 ALPSEPQADAAAGSRVLVEGAGDEEGR-VLTTFLSPDPDSASSSSRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLH 323 (467)
T ss_dssp CCCCC-----------CCCCCCCTTCC-EEEEEECSSCCC----CCEEEEEEECCCCCTTSTTHHHHHHTHHHHHHHHHH
T ss_pred ccccccccccccccccccccccCCCCc-EEEEEEEeCCcccccCceEEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 1 123566 66777766431 689999999986321 1222 22222221
Q ss_pred c---------------------CCCCEEEEecCCCCCCCCChhh--HHHHHHHhhhhcCCCChhHHHHH-HHhcCCceee
Q 012520 308 S---------------------NDSPHILAGGLNSLDGSDYSAE--RWMDIVKYYEDIGKPTPRVEVMK-LLKGIEYVDS 363 (461)
Q Consensus 308 ~---------------------~~~PvIL~GDFNs~~~s~~~~~--~~~~i~~~~~~~~~~~p~~~v~~-~L~~~gl~Da 363 (461)
. .+.|+|||||||..+.+.+... .|.... ...+....+++.++ .|...||+|+
T Consensus 324 ~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~~---~~~gf~~~er~~~~~lL~~~gL~Da 400 (467)
T 2j63_A 324 RLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQ---ECSGFAPEERMSFRETMQRTNSVDI 400 (467)
T ss_dssp HHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHHT---TSTTSCHHHHHHHHHHHHHTTEEEH
T ss_pred HhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhcc---cccccCHHHHHHHHHHHhhCCCEEe
Confidence 1 2579999999999876542100 011110 11111112233344 4446799999
Q ss_pred ecccCC---CCceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEEcCCCCCCCccceEEEEEe
Q 012520 364 KEFAGE---CEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTK 430 (461)
Q Consensus 364 ~~~~~~---~~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~vi~~~~~SDH~PV~ad~~l 430 (461)
|+..++ +.+|+|.+.... .....++||||||+++.+. ..+.++.++....+|||+||+++|.+
T Consensus 401 fR~~~p~~~~~yTw~s~r~~~--~~~n~g~RIDyIlvS~~l~--~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 401 FRQLYPQAGPVYSFWSQRING--RPRNLGWRLDYFVVSSRLA--SYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp HHHHCTTBCSCCSBCCTTTTT--TTTTCCBCCEEEEEEGGGG--GGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred hHhhCCCCCCCccccCCCCCc--ccCCCCceeEEEEEcHHHH--cceeEEEECCCCCCCCcccEEEEEEc
Confidence 987765 246777654321 1224579999999999843 23678888876689999999999975
No 13
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.91 E-value=2.6e-24 Score=205.96 Aligned_cols=223 Identities=19% Similarity=0.196 Sum_probs=136.6
Q ss_pred HHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEec-CCCCeeEEEEEeccceeeEEEeccC---CCCCc
Q 012520 193 SIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAES-WAPEYGNAILSKWPIKRWKVQKIAD---DKDFR 268 (461)
Q Consensus 193 ~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~-~~~~~GvAIlSR~Pi~~~~~~~l~~---~~~~R 268 (461)
.++++|++++||||||||++..... ....+....||.+.+... ..+.+|++||||+|+..... .++. +...|
T Consensus 19 ~i~~~i~~~~~DIi~LQE~~~~~~~---~~~~l~~~~gy~~~~~~~~~~~~~G~ailsr~~~~~~~~-~~~~~~~~~~~r 94 (259)
T 2jc5_A 19 GFYEYIAASGADIVCVQELKAQEAD---LSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQI-GMGIEEFDREGR 94 (259)
T ss_dssp THHHHHHHTTCSEEEEECCCCCGGG---CCHHHHSGGGCEEEEECCSSTTCCCEEEEESSCCSEEEE-SCSCHHHHTTCC
T ss_pred HHHHHHHhcCCCEEEEEEecchhhc---cChhhccccCCeEEEeccCCCCcceEEEEEecCceeEEe-CCCCCccCCCCe
Confidence 3999999999999999999866321 113344456888777643 34568999999999876543 1221 12344
Q ss_pred eEEEEEEEcCCCcEEEEEEecCCCCC-HHHHH----HHHHHHHh---c---CCCCEEEEecCCCCCCCCChhhHHHHHHH
Q 012520 269 NVLKATVDVPWAGEVNVDSTQLDHLN-EKWRM----KQICAIIQ---S---NDSPHILAGGLNSLDGSDYSAERWMDIVK 337 (461)
Q Consensus 269 ~~i~a~i~l~gg~~v~v~ntHL~~~~-~~~R~----~Ql~~Ll~---~---~~~PvIL~GDFNs~~~s~~~~~~~~~i~~ 337 (461)
++.+.+ ..+.|+|+|+.+.. ..+|. .|++.|.+ . .+.|+|||||||+.+.+.+. ..|..
T Consensus 95 -~~~~~~-----~~~~v~~~h~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~-~~~~~--- 164 (259)
T 2jc5_A 95 -FVRCDF-----GRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDL-KNWKG--- 164 (259)
T ss_dssp -EEEEEE-----TTEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGB-SCSTT---
T ss_pred -EEEEEc-----CCEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhc-cChhh---
Confidence 454444 36999999998753 23343 44555532 1 37899999999998765210 00000
Q ss_pred hhhhcCCCChhHHHHH-HHhcCCceeeecccCCC--CceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEEcC
Q 012520 338 YYEDIGKPTPRVEVMK-LLKGIEYVDSKEFAGEC--EPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVIS 414 (461)
Q Consensus 338 ~~~~~~~~~p~~~v~~-~L~~~gl~Da~~~~~~~--~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~vi~ 414 (461)
.....+...+..+.+. .+...||.|+|+..++. .+|+|...... .....+.||||||+++++.. .+.+++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~l~d~~~~~~~~~~~~T~~~~~~~~--~~~~~~~rID~i~~s~~~~~--~~~~~~v~~ 240 (259)
T 2jc5_A 165 NQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQA--YAKDVGWRIDYQMVTPELAA--KAVSAHVYK 240 (259)
T ss_dssp CTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTCCCCCEESCSSHH--HHTTCEECCEEEEECHHHHT--TEEEEEECC
T ss_pred cCCCCCcCHHHHHHHHHHhccCCcEEeeHhhCCCCCCccEECCcCCC--ccCCCeeEEEEEEECHHHHh--HHhheeecC
Confidence 0000000011123333 44478999999865542 23444322210 01123579999999987321 267888886
Q ss_pred CCCCCCccceEEEEEecCc
Q 012520 415 SKGTSDHHIVKVDVTKVSE 433 (461)
Q Consensus 415 ~~~~SDH~PV~ad~~l~~e 433 (461)
...+|||+||+++|.+..|
T Consensus 241 ~~~~SDH~pv~~~l~~~~~ 259 (259)
T 2jc5_A 241 DEKFSDHAPLVVEYDYAAE 259 (259)
T ss_dssp SSCCSSBCCEEEEESCCCC
T ss_pred CCCCCCcccEEEEEecccC
Confidence 5689999999999987654
No 14
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.91 E-value=1.9e-24 Score=212.42 Aligned_cols=213 Identities=15% Similarity=0.109 Sum_probs=130.4
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEE------------EEec---CCCCeeEEEEEecc
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYV------------FAES---WAPEYGNAILSKWP 252 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~------------f~~~---~~~~~GvAIlSR~P 252 (461)
..+.+.+.+.|...+||||||||+..... .......|.+.++|.+. |+.. ..+.+|++||||+|
T Consensus 32 ~~r~~~i~~~~~~~~~DIv~LQEv~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ailSr~p 110 (301)
T 1zwx_A 32 MHRADLIAQADYMKNNDVVILNEAFDTSA-SHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWP 110 (301)
T ss_dssp HHHHHHHHTSGGGSSCSEEEEEEECSHHH-HHHHHHHTTTTCCEECCCTTSCSTTCSEEEC-----CCBCCCCEEEESSC
T ss_pred HHHHHHHHHhhccCCCCEEEEeccccHHH-HHHHHHHHhhcCCccccccCCccccccccccccccccccCCCEEEEecCC
Confidence 35677788888899999999999975410 00111222222222111 1110 12458999999999
Q ss_pred ceeeEEEeccC-----CCCCceEEEEEEEcCCCcEEEEEEecCCCC--------CHHHHHHHHHHHHhc-------CCCC
Q 012520 253 IKRWKVQKIAD-----DKDFRNVLKATVDVPWAGEVNVDSTQLDHL--------NEKWRMKQICAIIQS-------NDSP 312 (461)
Q Consensus 253 i~~~~~~~l~~-----~~~~R~~i~a~i~l~gg~~v~v~ntHL~~~--------~~~~R~~Ql~~Ll~~-------~~~P 312 (461)
+.......++. ....|+++.+++++++ +.|.|+|+|+.+. ....|..|++.|.+. .+.|
T Consensus 111 i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g-~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~p 189 (301)
T 1zwx_A 111 IVEKSQHIFQRGGGADRLSNKGFAYVKIMKNG-KPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEI 189 (301)
T ss_dssp EEEEEEEECSCCCGGGGGBCCEEEEEEEEETT-EEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSE
T ss_pred cccceEEEecCCCCcccccCCCeEEEEEEECC-EEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 99888777763 1246889999999876 8999999999875 345688898887542 2479
Q ss_pred EEEEecCCCCCCCCChhhHHHHHHHhhhhcCCCChhHHHHHHHhcCCce--eeecccCCCCceEeecC-Cc---cccCCC
Q 012520 313 HILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYV--DSKEFAGECEPVVIIAK-GQ---NVQGTC 386 (461)
Q Consensus 313 vIL~GDFNs~~~s~~~~~~~~~i~~~~~~~~~~~p~~~v~~~L~~~gl~--Da~~~~~~~~~tt~~~~-g~---~~~~t~ 386 (461)
+|||||||+.+++. .++.+.. ..++. |+|. +...||... +. ...+.
T Consensus 190 vIl~GDfN~~~~~~----~~~~l~~-------------------~~~~~~~d~~~----g~~~T~~~~~n~~~~~t~~~- 241 (301)
T 1zwx_A 190 IFIGGDLNVNYGTD----EYHDMLK-------------------LLNVSSPANFN----GQMATWDPTTNSMLKESYPK- 241 (301)
T ss_dssp EEEEEECCCCTTSH----HHHHHHH-------------------HHTBCCCTTCC----TTSCSBCTTTCHHHHHHCTT-
T ss_pred EEEEeeCCCCCCcH----HHHHHHH-------------------HcCCCCCcccc----CCCceECCccCccccccCCC-
Confidence 99999999998864 2222111 12333 5554 223334221 10 01122
Q ss_pred CCCCceEEEEECCCCCCc--------------eeeeEEEEcCC-CCCCCccceEEEEEe
Q 012520 387 KYGTRVDYILASPDSPYK--------------FVPGSYSVISS-KGTSDHHIVKVDVTK 430 (461)
Q Consensus 387 ~~~~RIDyIf~S~~~~~~--------------~~v~s~~vi~~-~~~SDH~PV~ad~~l 430 (461)
.+..||||||+++..... +.+.++.+... ..+|||+||+++|.+
T Consensus 242 ~~~~rID~I~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 242 AAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTDN 300 (301)
T ss_dssp SCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC-
T ss_pred CCcceEeEEEEeCCCCCcccccceeeccccccceeecccCCccccCCCCCccEEEEEec
Confidence 357899999999874211 11111111111 368999999999975
No 15
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.91 E-value=4.4e-24 Score=206.70 Aligned_cols=222 Identities=16% Similarity=0.136 Sum_probs=140.1
Q ss_pred HHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEec-CCCCeeEEEEEeccceeeEEEeccC---CCCCc
Q 012520 193 SIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAES-WAPEYGNAILSKWPIKRWKVQKIAD---DKDFR 268 (461)
Q Consensus 193 ~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~-~~~~~GvAIlSR~Pi~~~~~~~l~~---~~~~R 268 (461)
.+.++|++.+||||||||++...... ...+....||.+.|... ..+..|+|||+|.|+...... +.. +.+.|
T Consensus 21 ~l~~~i~~~~~DIv~LQEt~~~~~~~---~~~~~~~~gy~~~~~~~~~~~~~Gvail~k~~~~~~~~~-~~~~~~d~~gr 96 (265)
T 3g91_A 21 GFLKWFMEEKPDILCLQEIKAAPEQL---PRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPSSLREG-FGVERFDTEGR 96 (265)
T ss_dssp THHHHHHHHCCSEEEEECCCSCGGGS---CHHHHCCTTCEEEEECBSSTTSCCEEEEESSCCSEEECC-CSCHHHHSBSC
T ss_pred hHHHHHHhcCCCEEEEEecccccccc---ChhhhcccCCcEEEccCCCCCcCEEEEEEecChHHhccC-CCCcccCCcCC
Confidence 49999999999999999997663221 12233346887666543 346679999999988654331 111 23344
Q ss_pred eEEEEEEEcCCCcEEEEEEecCCCCCHH-----HHHHHHHHHHh------cCCCCEEEEecCCCCCCCCChhhHHHHHHH
Q 012520 269 NVLKATVDVPWAGEVNVDSTQLDHLNEK-----WRMKQICAIIQ------SNDSPHILAGGLNSLDGSDYSAERWMDIVK 337 (461)
Q Consensus 269 ~~i~a~i~l~gg~~v~v~ntHL~~~~~~-----~R~~Ql~~Ll~------~~~~PvIL~GDFNs~~~s~~~~~~~~~i~~ 337 (461)
++.+.+ ..+.|+|+|+.+.... .|..+++.|.+ ..+.|+|||||||..+...+... + ..
T Consensus 97 -~i~~~~-----~~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~-~---~~ 166 (265)
T 3g91_A 97 -IQIADF-----DDFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLAR-P---KE 166 (265)
T ss_dssp -EEEEEC-----SSCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSC-T---GG
T ss_pred -EEEEEe-----CCEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccC-H---hh
Confidence 343332 4699999999764321 23344444432 12689999999999876421000 0 00
Q ss_pred hhhhcCCCChhHHHHHHHhcCCceeeecccCCC--CceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEEcCC
Q 012520 338 YYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGEC--EPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISS 415 (461)
Q Consensus 338 ~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~--~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~vi~~ 415 (461)
.....+...++.+.++.|.+.||+|+|+..++. .+|+|...+.. .....++||||||+++.+.. .+.++.+...
T Consensus 167 ~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~p~~~~yT~~~~~~~~--~~~~~~~rID~il~s~~~~~--~~~~~~i~~~ 242 (265)
T 3g91_A 167 NSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRA--RERNVGWRLDYFFVNEEFKG--KVKRSWILSD 242 (265)
T ss_dssp GTTSTTSCHHHHHHHHHHHHTTEEETHHHHCCCSCCCSBCCSSTTT--TTTTCCBCCEEEEEEGGGGG--GEEEEEECTT
T ss_pred cCCCCccCHHHHHHHHHHHhcCcEEeeHhhCCCCCCCCCcCCCCCc--cccCceEEEEEEEECHHHHh--hhcEEEEeCC
Confidence 001111122234566666688999999876553 45666554431 22345789999999998532 4578888876
Q ss_pred CCCCCccceEEEEEecC
Q 012520 416 KGTSDHHIVKVDVTKVS 432 (461)
Q Consensus 416 ~~~SDH~PV~ad~~l~~ 432 (461)
..+|||+||++++....
T Consensus 243 ~~~SDH~Pv~~~~~~~~ 259 (265)
T 3g91_A 243 VMGSDHCPIGLEIELLE 259 (265)
T ss_dssp CCSSSBCCEEEEEECCC
T ss_pred CCCCCcceEEEEhhhhh
Confidence 67999999999997543
No 16
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.90 E-value=2.1e-23 Score=196.85 Aligned_cols=211 Identities=16% Similarity=0.133 Sum_probs=131.5
Q ss_pred hHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEe-cCCCCeeEEEEEeccceeeEEEeccCCCCCc
Q 012520 190 CSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAE-SWAPEYGNAILSKWPIKRWKVQKIADDKDFR 268 (461)
Q Consensus 190 ~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~-~~~~~~GvAIlSR~Pi~~~~~~~l~~~~~~R 268 (461)
+.+.+.++|++.+||||||||++..... +..+ ...||.+.|.. ...+.+|++|++|.++..... ....+.+.|
T Consensus 23 ~~~~~~~~i~~~~~DIv~LQE~~~~~~~----~~~l-~~~~y~~~~~~~~~~~~~Gvail~r~~~~~~~~-~~~~~~~~r 96 (238)
T 1vyb_A 23 KRHRLASWIKSQDPSVCCIQETHLTCRD----THRL-KIKGWRKIYQANGKQKKAGVAILVSDKTDFKPT-KIKRDKEGH 96 (238)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCCCTTS----GGGC-CCTTCCEEEEECCSSSSCCEEEEECTTCCCEEE-EEEECTTSS
T ss_pred hHHHHHHHHHHcCCCEEEEecccCCCCC----chhH-hhCCCCeEEEccCCCCCceEEEEEeCCCCcccc-ceeEcCCCc
Confidence 4578999999999999999999754211 1112 13477766533 234567999999986322111 111123455
Q ss_pred eEEEEEEEcCCCcEEEEEEecCCCCCHHHHHHHHHHHHh-cCCCCEEEEecCCCCCCCCChhhHHHHHHHhhhhcCCCCh
Q 012520 269 NVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQ-SNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTP 347 (461)
Q Consensus 269 ~~i~a~i~l~gg~~v~v~ntHL~~~~~~~R~~Ql~~Ll~-~~~~PvIL~GDFNs~~~s~~~~~~~~~i~~~~~~~~~~~p 347 (461)
++.+++.+.+ ..+.|+++|+++........++...+. ..+.|+|||||||+.+.+.+. .. .+....
T Consensus 97 -~i~~~~~~~~-~~~~v~~~y~p~~~~~~~~~~l~~~l~~~~~~~~Il~GDFN~~~~~~~~----------~~-~~~~~~ 163 (238)
T 1vyb_A 97 -YIMVKGSIQQ-EELTILNIYAPNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDR----------ST-RQKVNK 163 (238)
T ss_dssp -EEEEEEEETT-EEEEEEEEECCSSSHHHHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGB----------TT-CCCCCH
T ss_pred -EEEEEEEeCC-CcEEEEEEecCCCCcHHHHHHHHHHHHhccCCCEEEEccCCCCCCcccc----------CC-CCCCcH
Confidence 5667887765 899999999986444322233322232 246899999999997653210 00 011112
Q ss_pred hHH-HHHHHhcCCceeeecccCC--CCceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEEcCCCCCCCccce
Q 012520 348 RVE-VMKLLKGIEYVDSKEFAGE--CEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIV 424 (461)
Q Consensus 348 ~~~-v~~~L~~~gl~Da~~~~~~--~~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~vi~~~~~SDH~PV 424 (461)
... +.+.+...||.|+|+..++ ..+|+|...+ ....||||||+++++. ..+.++++... .+|||+||
T Consensus 164 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~T~~~~~~-------~~~~rID~i~~s~~~~--~~~~~~~v~~~-~~SDH~pv 233 (238)
T 1vyb_A 164 DTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPH-------HTYSKIDHIVGSKALL--SKCKRTEIITN-YLSDHSAI 233 (238)
T ss_dssp HHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTT-------TEEECCEEEEEEGGGG--GGEEEEEEECC-SSSSSCEE
T ss_pred HHHHHHHHHhhCCCEEhhHhhCCCCCceeEEcCCC-------CcccceEEEEeCHHHH--hhhhhceeecC-CCCCcccE
Confidence 222 3334557799999976543 2345543322 1246999999998742 12567787764 89999999
Q ss_pred EEEEE
Q 012520 425 KVDVT 429 (461)
Q Consensus 425 ~ad~~ 429 (461)
+++|.
T Consensus 234 ~~~l~ 238 (238)
T 1vyb_A 234 KLELR 238 (238)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99973
No 17
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.90 E-value=7.1e-24 Score=211.71 Aligned_cols=219 Identities=19% Similarity=0.137 Sum_probs=127.0
Q ss_pred HHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcE-EEEe-c-CCCCeeEEEEEeccceeeEEEecc---CCCCC
Q 012520 194 IAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKY-VFAE-S-WAPEYGNAILSKWPIKRWKVQKIA---DDKDF 267 (461)
Q Consensus 194 i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~-~f~~-~-~~~~~GvAIlSR~Pi~~~~~~~l~---~~~~~ 267 (461)
++++|++++||||||||+...... ....|....||.+ ++.. . ..+.+|++||||+|+..... .++ .+.+.
T Consensus 80 i~~~i~~~~~DIi~LQE~~~~~~~---~~~~l~~~~gy~~~~~~~~~~~~g~~Gvailsr~~~~~~~~-~~~~~~~~~~~ 155 (318)
T 1hd7_A 80 GLDWVKEEAPDILCLQETKCSENK---LPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSY-GIGDEEHDQEG 155 (318)
T ss_dssp HHHHHHHHCCSEEEEECCCCCC--------------CCCEEEEECC-----CCCEEEEESSCCSEEEE-SCSCGGGSSSS
T ss_pred HHHHHHhhCCCEEEEEEccCchhh---ccHHHHhcCCCceEEEecCCCCCccceEEEEEcCCceeEEe-cCCCcccCCCC
Confidence 899999999999999999865321 1123444568843 3443 1 23567999999999765432 121 13345
Q ss_pred ceEEEEEEEcCCCcEEEEEEecCCCCCH-----HHHHHHHHHHHhc-----CCCCEEEEecCCCCCCCCChhhHHHHHHH
Q 012520 268 RNVLKATVDVPWAGEVNVDSTQLDHLNE-----KWRMKQICAIIQS-----NDSPHILAGGLNSLDGSDYSAERWMDIVK 337 (461)
Q Consensus 268 R~~i~a~i~l~gg~~v~v~ntHL~~~~~-----~~R~~Ql~~Ll~~-----~~~PvIL~GDFNs~~~s~~~~~~~~~i~~ 337 (461)
| ++.+.+ ..+.|+|+|+.+... ..|..|++.|.+. ...|+|||||||+.+.+.+. ..+..
T Consensus 156 r-~l~~~~-----~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D~-~~~~~--- 225 (318)
T 1hd7_A 156 R-VIVAEF-----DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDL-RNPKG--- 225 (318)
T ss_dssp C-EEEEEC-----SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGB-SCHHH---
T ss_pred c-EEEEEc-----CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhhc-cChhh---
Confidence 6 454443 369999999976432 2355666655432 13799999999998754210 00110
Q ss_pred hhhhcCCCChhHHHH-HHHhcCCceeeecccCCC--C-ceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEEc
Q 012520 338 YYEDIGKPTPRVEVM-KLLKGIEYVDSKEFAGEC--E-PVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVI 413 (461)
Q Consensus 338 ~~~~~~~~~p~~~v~-~~L~~~gl~Da~~~~~~~--~-~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~vi 413 (461)
.....+......+.+ ..+...||.|+|+..++. . +|+|...+.. .....+.||||||+++++. ..+.++.++
T Consensus 226 ~~~~~g~~~~~~~~~~~~ll~~~l~D~~r~~~p~~~~~~T~~~~~~~~--~~~~~~~rID~il~s~~~~--~~v~~~~v~ 301 (318)
T 1hd7_A 226 NKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNA--RSKNVGWRLDYFLLSHSLL--PALCDSKIR 301 (318)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGH--HHHTCCBCCEEEEECGGGG--GGEEEEEEC
T ss_pred cCCCCCcCHHHHHHHHHHHhhCCCEEeehhhCCCCCCCcceECCcCCC--cccCCceEEEEEEECHHHH--hhhhheEee
Confidence 000111111123344 444455999999876552 2 4443322110 0123468999999999742 126788888
Q ss_pred CCCCCCCccceEEEEEe
Q 012520 414 SSKGTSDHHIVKVDVTK 430 (461)
Q Consensus 414 ~~~~~SDH~PV~ad~~l 430 (461)
....+|||+||+++|.+
T Consensus 302 ~~~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 302 SKALGSDHCPITLYLAL 318 (318)
T ss_dssp TTCCSSSBCCEEEEECC
T ss_pred ccCCCCCccCEEEEecC
Confidence 65578999999999864
No 18
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.90 E-value=3.8e-23 Score=201.76 Aligned_cols=219 Identities=19% Similarity=0.136 Sum_probs=128.7
Q ss_pred HHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCc-EEEEe-c-CCCCeeEEEEEeccceeeEEEecc---CCCCC
Q 012520 194 IAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMK-YVFAE-S-WAPEYGNAILSKWPIKRWKVQKIA---DDKDF 267 (461)
Q Consensus 194 i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~-~~f~~-~-~~~~~GvAIlSR~Pi~~~~~~~l~---~~~~~ 267 (461)
++++|++.+||||||||+........ ..+....||. +++.. . ..+.+|++||||+|+...... ++ .+.+.
T Consensus 47 i~~~i~~~~~DIi~LQE~~~~~~~~~---~~l~~~~gy~~~~~~~~~~~~g~~Gvailsr~~~~~~~~~-~~~~~~~~~~ 122 (285)
T 2o3h_A 47 GLDWVKEEAPDILCLQETKCSENKLP---AELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYG-IGDEEHDQEG 122 (285)
T ss_dssp HHHHHHHHCCSEEEEECCCCCTTSCC---GGGGGCGGGCEEEEECBC--CCSCCEEEEESSCCSEEEES-CSCGGGSSBC
T ss_pred HHHHHHhcCCCEEEEEEeecchhhcc---HHHHhccCCcEEEEecccCCcccceEEEEEccChHHeeec-cCCcccCCCC
Confidence 89999999999999999987632211 1233345774 34443 1 245679999999996644321 21 13345
Q ss_pred ceEEEEEEEcCCCcEEEEEEecCCCCCH-----HHHHHHHHHHHh---c--CCCCEEEEecCCCCCCCCChhhHHHHHHH
Q 012520 268 RNVLKATVDVPWAGEVNVDSTQLDHLNE-----KWRMKQICAIIQ---S--NDSPHILAGGLNSLDGSDYSAERWMDIVK 337 (461)
Q Consensus 268 R~~i~a~i~l~gg~~v~v~ntHL~~~~~-----~~R~~Ql~~Ll~---~--~~~PvIL~GDFNs~~~s~~~~~~~~~i~~ 337 (461)
| ++.+.+ +.+.|+++|+.+... ..|..|++.|.+ . ...|+|||||||+.+...+.. .+. .
T Consensus 123 r-~l~~~~-----~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D~~-~~~---~ 192 (285)
T 2o3h_A 123 R-VIVAEF-----DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLR-NPK---G 192 (285)
T ss_dssp C-EEEEEC-----SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBS-CTT---T
T ss_pred c-EEEEEe-----CCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhhcc-Chh---h
Confidence 5 444332 469999999976432 235566655532 1 258999999999876431000 000 0
Q ss_pred hhhhcCCCChhHHHH-HHHhcCCceeeecccCCC--C-ceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEEc
Q 012520 338 YYEDIGKPTPRVEVM-KLLKGIEYVDSKEFAGEC--E-PVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVI 413 (461)
Q Consensus 338 ~~~~~~~~~p~~~v~-~~L~~~gl~Da~~~~~~~--~-~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~vi 413 (461)
.....+....+...+ ..+...||.|+|+..++. . +|+|...+.. .....+.||||||+++++. ..+.+++++
T Consensus 193 ~~~~~g~~~~~~~~~~~~~l~~~l~D~~~~~~~~~~~~~T~~~~~~~~--~~~~~~~rID~i~~s~~~~--~~v~~~~v~ 268 (285)
T 2o3h_A 193 NKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNA--RSKNVGWRLDYFLLSHSLL--PALCDSKIR 268 (285)
T ss_dssp CTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCCSCCSBCCSSTTH--HHHTCCBCCEEEEECGGGG--GGEEEEEEC
T ss_pred cCCCCCcCHHHHHHHHHHHhcCCCEEEEEecCCCCCCcEeEecCcCCc--cccCceeEEEEEEECHHHH--hhhhheEee
Confidence 000000011122333 433345999999866542 2 3443322210 0113468999999998742 126788888
Q ss_pred CCCCCCCccceEEEEEe
Q 012520 414 SSKGTSDHHIVKVDVTK 430 (461)
Q Consensus 414 ~~~~~SDH~PV~ad~~l 430 (461)
....+|||+||+++|.+
T Consensus 269 ~~~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 269 SKALGSDHCPITLYLAL 285 (285)
T ss_dssp TTCCSSSBCCEEEEECC
T ss_pred ccCCCCCeecEEEEecC
Confidence 75578999999999864
No 19
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.89 E-value=1.7e-22 Score=198.80 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHh--CCcE---------------EEEec---CCCCeeEEEE
Q 012520 189 KCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAAL--GMKY---------------VFAES---WAPEYGNAIL 248 (461)
Q Consensus 189 ~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~--g~~~---------------~f~~~---~~~~~GvAIl 248 (461)
.+.+.+...+...+||||||||+.... ....|.+.+ +|.| .|+.. ..+.+|++||
T Consensus 32 ~r~~~~~~~~~~~~~DIv~LQEv~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ail 106 (306)
T 2ddr_A 32 ERADLIGAADYIKNQDVVILNEVFDNS-----ASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIV 106 (306)
T ss_dssp HHHHHHHHCSTTCSCSEEEEEEECCHH-----HHHHHHHHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEE
T ss_pred HHHHHHHHHhhccCCCEEEEEeecCHH-----HHHHHHHHHhhhCCceeeccCcccccccccccccccccCccCCeEEEE
Confidence 466777777888999999999996541 112222111 2222 22211 1346899999
Q ss_pred EeccceeeEEEeccCC-----CCCceEEEEEEEcCCCcEEEEEEecCCCC--------CHHHHHHHHHHHHhc-------
Q 012520 249 SKWPIKRWKVQKIADD-----KDFRNVLKATVDVPWAGEVNVDSTQLDHL--------NEKWRMKQICAIIQS------- 308 (461)
Q Consensus 249 SR~Pi~~~~~~~l~~~-----~~~R~~i~a~i~l~gg~~v~v~ntHL~~~--------~~~~R~~Ql~~Ll~~------- 308 (461)
||+|+.......++.. ..+|.++.+++++++ +.+.|+|+|+.+. ....|..|++.|.+.
T Consensus 107 Sr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~g-~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~ 185 (306)
T 2ddr_A 107 SKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKND-RFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIP 185 (306)
T ss_dssp ESSCEEEEEEEECSCCC----CCCCEEEEEEEEETT-EEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ECCCcccccEEEcCCCCCcchhcCCCeEEEEEEeCC-EEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998777666532 357889999999885 8999999999875 345688888887532
Q ss_pred CCCCEEEEecCCCCC
Q 012520 309 NDSPHILAGGLNSLD 323 (461)
Q Consensus 309 ~~~PvIL~GDFNs~~ 323 (461)
.+.|+|||||||+.+
T Consensus 186 ~~~pvil~GDfN~~~ 200 (306)
T 2ddr_A 186 NNEYVLIGGDMNVNK 200 (306)
T ss_dssp TTSCEEEEEECCCCC
T ss_pred CCCEEEEEeeCCCCc
Confidence 246999999999998
No 20
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.88 E-value=1.3e-21 Score=187.30 Aligned_cols=208 Identities=14% Similarity=0.103 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEec-CCCCeeEEEEEec-cceeeEEEeccCCCC
Q 012520 189 KCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAES-WAPEYGNAILSKW-PIKRWKVQKIADDKD 266 (461)
Q Consensus 189 ~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~-~~~~~GvAIlSR~-Pi~~~~~~~l~~~~~ 266 (461)
.+.+.++++|++.+||||||||++...... +....||.+.+... .++.+|+|||++. ++.. ..++ ...
T Consensus 32 ~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~------~~~~~gy~~~~~~~~~~~~~GvaIl~~~~~~~~---~~~~-~~~ 101 (245)
T 1wdu_A 32 LATAELAIEAATRKAAIALIQEPYVGGAKS------MKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDV---IQYP-QLT 101 (245)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCC------------CCCSSCEEEECCCCTTCCCCEEEEECCSSCEE---EECT-TTC
T ss_pred HHHHHHHHHHhhcCCCEEEEEcccccCCcc------ccCCCcceEeccccccCCCCCeEEEEECCCcce---EEec-ccc
Confidence 456789999999999999999997652111 11123554333221 2356899999953 4432 1222 123
Q ss_pred CceEEEEEEEcCCCcEEEEEEecCCCCC-HHHHHHHHHHHHhc-CCCCEEEEecCCCCCCCCChhhHHHHHHHhhhhcCC
Q 012520 267 FRNVLKATVDVPWAGEVNVDSTQLDHLN-EKWRMKQICAIIQS-NDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGK 344 (461)
Q Consensus 267 ~R~~i~a~i~l~gg~~v~v~ntHL~~~~-~~~R~~Ql~~Ll~~-~~~PvIL~GDFNs~~~s~~~~~~~~~i~~~~~~~~~ 344 (461)
.+..+.+.++..+ ..+.|+|+|+++.. ......++..+++. ...|+|||||||+.+.. |.. ..
T Consensus 102 ~~~~~~~~i~~~~-~~~~v~~vy~p~~~~~~~~~~~l~~~~~~~~~~~~Ii~GDfN~~~~~------~~~--------~~ 166 (245)
T 1wdu_A 102 TNNIVVVGIRTRA-WEITLVSYYFEPDKPIESYLEQIKRVERKMGPKRLIFGGDANAKSTW------WGS--------KE 166 (245)
T ss_dssp CSSEEEEEEECSS-CEEEEEEEECCTTSCSHHHHHHHHHHHHTTCSSSEEEEEECCCCCGG------GTC--------SS
T ss_pred cCCEEEEEEEcCC-CcEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEeccccCccc------CCC--------CC
Confidence 4557888888775 78999999998643 23456677777764 35799999999987532 110 00
Q ss_pred CChh-HHHHHHHhcCCceeeecccCCCCceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEEcCCCCCCCccc
Q 012520 345 PTPR-VEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHI 423 (461)
Q Consensus 345 ~~p~-~~v~~~L~~~gl~Da~~~~~~~~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~vi~~~~~SDH~P 423 (461)
.... ..+.+.+...|+.... ....+|+|...+. ...++||||||+++.+.. .+.++.+.+...+|||+|
T Consensus 167 ~~~~~~~l~~~~~~~~l~~~~---~~~~~T~~~~~~~-----~~~~~rID~i~~s~~~~~--~v~~~~v~~~~~~SDH~P 236 (245)
T 1wdu_A 167 DDARGDQLMGTLGELGLHILN---EGDVPTFDTIRGG-----KRYQSRVDVTFCTEDMLD--LIDGWRVDEDLVSSDHNG 236 (245)
T ss_dssp CCHHHHHHHHHHHHHTCEECC---CSCCCSEEC----------CCEECCEEEEECGGGBT--TEEEEEECTTSSSSSBCC
T ss_pred cCcchHHHHHHHHHCCcEEec---CCCCCcEECCCCC-----CCCCCEEEEEEeChHHHh--hccceEEcCCCCCCCccc
Confidence 0111 1223334344554321 1234566644321 123689999999997421 456888876568999999
Q ss_pred eEEEEEec
Q 012520 424 VKVDVTKV 431 (461)
Q Consensus 424 V~ad~~l~ 431 (461)
|+++|.+.
T Consensus 237 v~~~l~l~ 244 (245)
T 1wdu_A 237 MVFNIRLQ 244 (245)
T ss_dssp EEEEECCC
T ss_pred EEEEEEeC
Confidence 99999764
No 21
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.88 E-value=7.4e-22 Score=197.32 Aligned_cols=135 Identities=20% Similarity=0.212 Sum_probs=96.5
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEec---CCC--------------CeeEEEEEe
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAES---WAP--------------EYGNAILSK 250 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~---~~~--------------~~GvAIlSR 250 (461)
..+.+.+..++...+|||||||||+.... ...+++.|.+. |.|.+... ..+ ..|++||||
T Consensus 51 ~~R~~~i~~~~~~~~pDIv~LQEv~~~~~-~~~l~~~L~~~--~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr 127 (317)
T 3i41_A 51 YKRADLIGQSSYIKNNDVVIFNEAFDNGA-SDKLLSNVKKE--YPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSK 127 (317)
T ss_dssp HHHHHHHHHCSTTSSCSEEEEEEECSHHH-HHHHHHHTTTT--CCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEEES
T ss_pred HHHHHHHHHHhhccCCCEEEEEeeccHHH-HHHHHHHHHHh--CCcccccCCccccCccCcccccccccccCCccEEEeC
Confidence 35677788888889999999999975411 01122333322 33332111 000 159999999
Q ss_pred ccceeeEEEeccCC-----CCCceEEEEEEEcCCCcEEEEEEecCCCCC--------HHHHHHHHHHHHh---c----CC
Q 012520 251 WPIKRWKVQKIADD-----KDFRNVLKATVDVPWAGEVNVDSTQLDHLN--------EKWRMKQICAIIQ---S----ND 310 (461)
Q Consensus 251 ~Pi~~~~~~~l~~~-----~~~R~~i~a~i~l~gg~~v~v~ntHL~~~~--------~~~R~~Ql~~Ll~---~----~~ 310 (461)
+|+.......++.. ...|+++.++++++| ..|.|+|+|+.+.. ...|..|+..|.+ . .+
T Consensus 128 ~Pi~~~~~~~~~~~~~~d~~~~r~~~~~~i~~~g-~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~ 206 (317)
T 3i41_A 128 YPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNG-KNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKD 206 (317)
T ss_dssp SCEEEEEEEECSCCCSSGGGBCCEEEEEEEEETT-EEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCccceeEECCCCCCcccccCcceEEEEEEECC-EEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCC
Confidence 99998887777642 357889999999886 89999999998753 5688899988754 2 36
Q ss_pred CCEEEEecCCCCCCCC
Q 012520 311 SPHILAGGLNSLDGSD 326 (461)
Q Consensus 311 ~PvIL~GDFNs~~~s~ 326 (461)
.|+|||||||+.+++.
T Consensus 207 ~pvIl~GDfN~~~~s~ 222 (317)
T 3i41_A 207 ETVYIGGDLNVNKGTP 222 (317)
T ss_dssp SCEEEEEECCCCTTSH
T ss_pred CeEEEEeECCCCCCCH
Confidence 7999999999999864
No 22
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.85 E-value=1.2e-20 Score=194.57 Aligned_cols=165 Identities=19% Similarity=0.195 Sum_probs=110.0
Q ss_pred ccE-EeeecCCCceeeeeccccccCCccCCccccccccchHhhHHHHHHHHHccCCcEEEEcCccCCccCCcchH-HHHH
Q 012520 149 KLK-VSINLPDNEISLANSNVLMRSPVCLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQDVKAEEENDMKPL-SDLA 226 (461)
Q Consensus 149 ~~~-vs~n~~~~~isl~~~~~~~~n~~c~~~~~~~~~~~~~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l-~~L~ 226 (461)
.++ +|||+..+. +... ...++|... ...+..|...|+++|..++|||||||||.... ..+.+ ..|
T Consensus 31 ~~~V~syNIl~d~--~~~~---~~~~~~p~~-----~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q--~~~~l~~~L- 97 (398)
T 3ngq_A 31 SFTVMCYNVLCDK--YATR---QLYGYCPSW-----ALNWEYRKKGIMEEIVNCDADIISLQEVETEQ--YFTLFLPAL- 97 (398)
T ss_dssp EEEEEEEECCCGG--GCCT---TTCTTSCHH-----HHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHH--HHHTHHHHH-
T ss_pred CEEEEEEccCcCc--CCcc---ccccCCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEecccHHH--HHHHHHHHH-
Confidence 566 899997765 2221 223345332 23345678899999999999999999997531 01112 334
Q ss_pred HHhCCcEEEEecC----------CCCeeEEEEEe---ccceeeEEEeccC-------C-------CCC--ceEEEEEEEc
Q 012520 227 AALGMKYVFAESW----------APEYGNAILSK---WPIKRWKVQKIAD-------D-------KDF--RNVLKATVDV 277 (461)
Q Consensus 227 ~~~g~~~~f~~~~----------~~~~GvAIlSR---~Pi~~~~~~~l~~-------~-------~~~--R~~i~a~i~l 277 (461)
...||.+.|.... .+..|+||+.| +.+.....+++.+ + ... ...+.+.++.
T Consensus 98 ~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~~~~~~Ri~t~~nval~~~L~~ 177 (398)
T 3ngq_A 98 KERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEV 177 (398)
T ss_dssp HHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEE
T ss_pred HhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccchhhhcceeeccceeEEEEEEE
Confidence 4568887776431 24689999965 7788887777642 0 011 1234555654
Q ss_pred C--------------CCcEEEEEEecCCC--CCHHHHHHHHHHHHhc-------------------CCCCEEEEecCCCC
Q 012520 278 P--------------WAGEVNVDSTQLDH--LNEKWRMKQICAIIQS-------------------NDSPHILAGGLNSL 322 (461)
Q Consensus 278 ~--------------gg~~v~v~ntHL~~--~~~~~R~~Ql~~Ll~~-------------------~~~PvIL~GDFNs~ 322 (461)
. .++.|.|+||||.+ .....|..|+..|++. .+.|+|||||||+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~ 257 (398)
T 3ngq_A 178 HKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSL 257 (398)
T ss_dssp CGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCC
T ss_pred cccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCC
Confidence 3 24679999999997 3578999999887541 23699999999999
Q ss_pred CCCC
Q 012520 323 DGSD 326 (461)
Q Consensus 323 ~~s~ 326 (461)
|++.
T Consensus 258 P~s~ 261 (398)
T 3ngq_A 258 PDSG 261 (398)
T ss_dssp TTSH
T ss_pred CCCH
Confidence 9985
No 23
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=9.2e-22 Score=217.78 Aligned_cols=229 Identities=15% Similarity=0.108 Sum_probs=47.3
Q ss_pred chHhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEec----------CCCCeeEEEE---Eecc
Q 012520 186 ESAKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAES----------WAPEYGNAIL---SKWP 252 (461)
Q Consensus 186 ~~~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~----------~~~~~GvAIl---SR~P 252 (461)
.+..+...|+++|.+++|||||||||+.... .+.+..+....||.+.|... .....|+||+ +||+
T Consensus 422 ~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~--~~~l~~~l~~~gY~~~~~~~~~~~~~~~~~~~~~~G~AI~y~~srf~ 499 (727)
T 4b8c_D 422 SWDYRRNKLKEQILSYDSDLLCLQEVESKTF--EEYWVPLLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFK 499 (727)
T ss_dssp SHHHHHHHHHHHHHHSCCSSEEEC-CCHHHH--HTTTCC-------CEEC----------------CCCCEEEC------
T ss_pred hhhhhhhHHHHHHHHcCCCeEEEEecCHHHH--HHHHHHHHHhCCccEEEeccCCcccccccCCCCcccEEEEEEcccce
Confidence 4567888999999999999999999975311 01111222356787776322 1246899999 8899
Q ss_pred ceeeEEEeccCC------------------CCCceEEEEEEEcC-CCcEEEEEEecCCCC--CHHHHHHHHHHHHhc---
Q 012520 253 IKRWKVQKIADD------------------KDFRNVLKATVDVP-WAGEVNVDSTQLDHL--NEKWRMKQICAIIQS--- 308 (461)
Q Consensus 253 i~~~~~~~l~~~------------------~~~R~~i~a~i~l~-gg~~v~v~ntHL~~~--~~~~R~~Ql~~Ll~~--- 308 (461)
+.......+... ...|.++++.++.. .|..|.|+|+|+.+. ....|..|+..+++.
T Consensus 500 l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~ 579 (727)
T 4b8c_D 500 LITKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLET 579 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeeeeEEeechhhhhchhhcccHHHHhhcccCCcEEEEEEEeecCCCceEEEEEeccccCCCCCchHHHHHHHHHHHHHH
Confidence 988766655321 01235566666643 358999999999874 456788888776432
Q ss_pred --------------CCCCEEEEecCCCCCCCCChhhHHHHHHHhhhhcCCCChhHHHHHHHh------cCCceeeecccC
Q 012520 309 --------------NDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLK------GIEYVDSKEFAG 368 (461)
Q Consensus 309 --------------~~~PvIL~GDFNs~~~s~~~~~~~~~i~~~~~~~~~~~p~~~v~~~L~------~~gl~Da~~~~~ 368 (461)
.+.|+|||||||+.+++. .|..+....-. ..+......+..+. ...+.++|...+
T Consensus 580 ~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~----~~~~l~~~~v~-~~~d~~~~~~~~~~~~~~~~~~~l~say~~~~ 654 (727)
T 4b8c_D 580 LLKEETSHNFRQDIKKFPVLICGDFNSYINSA----VYELINTGRVQ-IHQEGNGRDFGYMSEKNFSHNLALKSSYNCIG 654 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcccccccccCCCceEEecccCCCCCCc----ceEeeecCCcC-cchhhccccccccccccccccccccchhhcCC
Confidence 145999999999999875 23322111000 00000000000000 113344444222
Q ss_pred CCCceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEE-EEc------------CCCCCCCccceEEEEEecCc
Q 012520 369 ECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSY-SVI------------SSKGTSDHHIVKVDVTKVSE 433 (461)
Q Consensus 369 ~~~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~-~vi------------~~~~~SDH~PV~ad~~l~~e 433 (461)
...+|.| +......|||||+|++. +.+... .++ ...++|||+||+++|.+.+.
T Consensus 655 ~~~~T~~---------~~~~~~~LDyI~~S~~~---l~~~~~~~~~~~~~~~~~~~~P~~~~pSDH~pV~a~f~l~~~ 720 (727)
T 4b8c_D 655 ELPFTNF---------TPSFTDVIDYIWFSTHA---LRVRGLLGEVDPEYVSKFIGFPNDKFPSDHIPLLARFEFMKT 720 (727)
T ss_dssp -CCCSBC---------CSSCCBCC--------------------CCCHHHHTTCSSSSBTTBCSSBCC----------
T ss_pred CCccccc---------cCccCCeeeeEEEcCCc---eeEeeccCCCCHHHhcccCCCCCCCCCCCceeEEEEEEEecC
Confidence 2223332 11234679999999863 222222 111 11257999999999998753
No 24
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.79 E-value=3.8e-20 Score=177.67 Aligned_cols=126 Identities=13% Similarity=0.181 Sum_probs=90.3
Q ss_pred HHHHHHHccC-CcEEEEcCccCCc-----------cCCcchHHHHHHHhC------CcEEEEecC---CCCeeEEEEEec
Q 012520 193 SIAEVLREVD-ADILSLQDVKAEE-----------ENDMKPLSDLAAALG------MKYVFAESW---APEYGNAILSKW 251 (461)
Q Consensus 193 ~i~~~I~~~~-pDVV~LQEv~~~~-----------~~~~~~l~~L~~~~g------~~~~f~~~~---~~~~GvAIlSR~ 251 (461)
.|.++|...+ +|||+|||++... ..+.+ +.++...+| |.|.|.... ++.||+||+||+
T Consensus 37 ~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~-v~E~~w~lGt~srp~~~yiY~~~~D~~~~r~nlAIlSr~ 115 (262)
T 2f1n_A 37 NVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIP-VRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNR 115 (262)
T ss_dssp HHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCC-CEEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEEESS
T ss_pred cHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcC-HHHHHHHhCCCCCCceEEEEEeeccCCCCceeeEEEEcc
Confidence 4666899988 9999999998541 11222 233333455 777776553 478999999999
Q ss_pred cceeeEEEeccC-CCCCceEEEEEEEcCCCcEEEEEEecCCCCCHHHHHHHHHHHHh---cC-C-----CCEEEEecCCC
Q 012520 252 PIKRWKVQKIAD-DKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQ---SN-D-----SPHILAGGLNS 321 (461)
Q Consensus 252 Pi~~~~~~~l~~-~~~~R~~i~a~i~l~gg~~v~v~ntHL~~~~~~~R~~Ql~~Ll~---~~-~-----~PvIL~GDFNs 321 (461)
|+.+ ...|+. ...+|.++.+++ +.+.|+++|+.+....+|.+|++.+.+ .. . .|+||+||||.
T Consensus 116 ~ade--v~vLp~~~~~~Rp~lgiri-----~~~~ff~tHa~a~~g~da~a~v~~I~~~~~~~~~~~~~~~pwii~GDFNr 188 (262)
T 2f1n_A 116 RADE--VFVLSPVRQGGRPLLGIRI-----GNDAFFTAHAIAMRNNDAPALVEEVYNFFRDSRDPVHQALNWMILGDFNR 188 (262)
T ss_dssp CCSE--EEEECCSSTTCCCEEEEEE-----TTEEEEEEECCSSSSCSHHHHHHHHHHHHHTCSSHHHHTCEEEEEEECSS
T ss_pred cccc--eEECCCCCCCCCceEEEEE-----CCEEEEEEEecCCCCccHHHHHHHHHHHHhcCcccccCCCcEEEEecCCC
Confidence 9994 444543 234899999888 249999999997655667777777754 33 3 49999999999
Q ss_pred CCCCC
Q 012520 322 LDGSD 326 (461)
Q Consensus 322 ~~~s~ 326 (461)
.|++.
T Consensus 189 ~P~sl 193 (262)
T 2f1n_A 189 EPADL 193 (262)
T ss_dssp CHHHH
T ss_pred CCcch
Confidence 88763
No 25
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.79 E-value=1.6e-18 Score=166.86 Aligned_cols=197 Identities=12% Similarity=0.214 Sum_probs=119.1
Q ss_pred HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecCCCCeeEEEEEeccceeeEEEeccCCCCC
Q 012520 188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADDKDF 267 (461)
Q Consensus 188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~~~~~GvAIlSR~Pi~~~~~~~l~~~~~~ 267 (461)
..+.+.+.++|++.+||||||||++.. .||. |. ....+|+||+++.+........... .
T Consensus 19 r~~~~~l~~~l~~~~~DIl~LQEt~~~--------------~gy~--~~--~~~~~gvail~~~~~~~~~~~~~~~---~ 77 (240)
T 2ei9_A 19 EDATRELPSIARDLGLDIVLVQEQYSM--------------VGFL--AQ--CGAHPKAGVYIRNRVLPCAVLHHLS---S 77 (240)
T ss_dssp HHHHHTHHHHHHHHTCSEEEEESCCTT--------------SSSE--EC--CSSSCSEEEEESSTTSCEEECGGGC---C
T ss_pred HHHHHHHHHHHHHcCCCEEEeecceEc--------------CCce--Ee--ccCCCCEEEEEecCCcceeeecccC---C
Confidence 456677999999999999999999632 1454 22 1347899999987443322211111 1
Q ss_pred ceEEEEEEEcCCCcEEEEEEecCCCCC-HHHHHHHHHHHHhc-CCCCEEEEecCCCCCCCCChhhHHHHHHHhhhhcCCC
Q 012520 268 RNVLKATVDVPWAGEVNVDSTQLDHLN-EKWRMKQICAIIQS-NDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKP 345 (461)
Q Consensus 268 R~~i~a~i~l~gg~~v~v~ntHL~~~~-~~~R~~Ql~~Ll~~-~~~PvIL~GDFNs~~~s~~~~~~~~~i~~~~~~~~~~ 345 (461)
+....+.++. ..+.|+|+|+++.. ...+..+++.|... .+.|+|||||||+.+.. |..... .....+
T Consensus 78 ~~~~~i~i~~---~~i~i~svY~P~~~~~~~~~~~l~~l~~~~~~~~~Ii~GDfN~~~~~------w~~~~~--~~~~~~ 146 (240)
T 2ei9_A 78 THITVVHIGG---WDLYMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPL------WHSLPR--HYVGRG 146 (240)
T ss_dssp SSEEEEEETT---TTEEEEEEECCTTSCSHHHHHHHHHHHHHTTTSCEEEEEECCCCCGG------GTCCHH--HHSSSC
T ss_pred CCEEEEEEee---ccEEEEEEEcCCCCchhHHHHHHHHHHHhcCCCcEEEEEeccccccc------ccCCCC--CCCCcc
Confidence 2244455543 46999999998642 34566777777643 35799999999987532 211000 000111
Q ss_pred ChhHHHHHHHhcCCceeeeccc--CC--CCceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEEcCCCCCCCc
Q 012520 346 TPRVEVMKLLKGIEYVDSKEFA--GE--CEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDH 421 (461)
Q Consensus 346 ~p~~~v~~~L~~~gl~Da~~~~--~~--~~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~vi~~~~~SDH 421 (461)
....+..+.|. +|.|++++. ++ ..+|+|...+ ++||||||+|+.+. ...+.+.+ ..+|||
T Consensus 147 ~~r~~~~~~l~--~~~d~~~l~~~~~~~~~~T~~s~~~---------~~rID~~l~s~~l~----~~~~~i~~-~~~SDH 210 (240)
T 2ei9_A 147 QEVADRRAKME--DFIGARRLVVHNADGHLPTFSTANG---------ESYVDVTLSTRGVR----VSEWRVTN-ESSSDH 210 (240)
T ss_dssp HHHHHHHHHHH--HHHHHTTCEECCCTTCCCSEEETTE---------EECCEEEEECTTCC----EEEEEECS-CCSSSB
T ss_pred hhhHHHHHHHH--HHHHhcCCEecCCCCCCceEeCCCC---------ceEEEEEEecCccc----cCCeEECC-CCCCCc
Confidence 11111223332 566665522 33 2466665321 58999999999853 24556654 579999
Q ss_pred cceEEEEEecC
Q 012520 422 HIVKVDVTKVS 432 (461)
Q Consensus 422 ~PV~ad~~l~~ 432 (461)
+||+++|....
T Consensus 211 ~Pv~~~l~~~~ 221 (240)
T 2ei9_A 211 RLIVFGVGGGT 221 (240)
T ss_dssp CCEEEEEEC--
T ss_pred ccEEEEECCCC
Confidence 99999997654
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.75 E-value=8.5e-18 Score=162.57 Aligned_cols=202 Identities=15% Similarity=0.139 Sum_probs=111.5
Q ss_pred HHHHHHHcc--CCcEEEEcCccCCccCCcchHHHHHHHh----C--CcEEEEecCC---CCeeEEEEEeccce-eeEEEe
Q 012520 193 SIAEVLREV--DADILSLQDVKAEEENDMKPLSDLAAAL----G--MKYVFAESWA---PEYGNAILSKWPIK-RWKVQK 260 (461)
Q Consensus 193 ~i~~~I~~~--~pDVV~LQEv~~~~~~~~~~l~~L~~~~----g--~~~~f~~~~~---~~~GvAIlSR~Pi~-~~~~~~ 260 (461)
.+++.|.+. +|||||||||.... ...+..|.+.+ + |.|......+ +..++++++|.+.. ......
T Consensus 20 ~~~~~i~~~~~~~DIv~LQEv~~~~---~~~~~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~ 96 (260)
T 2a40_B 20 TLASYIVRIVRRYDIVLIQEVRDSH---LVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQ 96 (260)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECCTT---SHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEEEE
T ss_pred HHHHHHHHHhccCCEEEEEEEEcCc---hhHHHHHHHHHHhccCCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCcee
Confidence 344444432 89999999997642 11344454443 4 4444333222 34568899886533 223333
Q ss_pred ccCC-------CCCceEEEEEEEcCC--CcEEEEEEecCCCCCHHHHHHHHHHHHh-----cCCCCEEEEecCCCCCCCC
Q 012520 261 IADD-------KDFRNVLKATVDVPW--AGEVNVDSTQLDHLNEKWRMKQICAIIQ-----SNDSPHILAGGLNSLDGSD 326 (461)
Q Consensus 261 l~~~-------~~~R~~i~a~i~l~g--g~~v~v~ntHL~~~~~~~R~~Ql~~Ll~-----~~~~PvIL~GDFNs~~~s~ 326 (461)
++.. ...|..+.+.++..+ |.+|.|+++|+++........++..+++ ..+.|+|||||||+.+...
T Consensus 97 ~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~~~q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~~~ 176 (260)
T 2a40_B 97 YDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYV 176 (260)
T ss_dssp CCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCSTTTS
T ss_pred ccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCccc
Confidence 4332 124777888888764 5899999999996433322333333332 2367999999999987621
Q ss_pred ChhhHHHHHHHhhhhcCCCChhHHHHHHHhcCCceeeecccCCCCceEeecCCccccCCCCCCCceEEEEECCCCCC-ce
Q 012520 327 YSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPY-KF 405 (461)
Q Consensus 327 ~~~~~~~~i~~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~-~~ 405 (461)
. ...|..+ ..+...+|.... .....+++ . ....+|||||+++.+.. .+
T Consensus 177 ~-~~~~~~l-----------------~~~~~~~~~~~~---~~~~~t~~--~--------~~~~~lD~I~~s~~~~~~~~ 225 (260)
T 2a40_B 177 T-SSQWSSI-----------------RLRTSSTFQWLI---PDSADTTA--T--------STNCAYDRIVVAGSLLQSSV 225 (260)
T ss_dssp C-GGGGGGC-----------------HHHHSTTEEESS---CTTCCCBS--S--------SCCCCCEEEEEESHHHHHHB
T ss_pred c-cchhhhe-----------------eeeccCCceEcc---cCCCCCcc--c--------CCCCCcccEEEcchHhhhcc
Confidence 0 1123211 112334554321 11112221 1 23469999999987310 01
Q ss_pred eeeEEEEcC-----------CCCCCCccceEEEE
Q 012520 406 VPGSYSVIS-----------SKGTSDHHIVKVDV 428 (461)
Q Consensus 406 ~v~s~~vi~-----------~~~~SDH~PV~ad~ 428 (461)
...++++.+ ....|||+||+++|
T Consensus 226 ~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~~~l 259 (260)
T 2a40_B 226 VPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTL 259 (260)
T ss_dssp CTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEB
T ss_pred cCCCCceeehHHhcCCCHHHHhhcCCCCeEEEEe
Confidence 113455543 12479999999987
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.75 E-value=1.3e-17 Score=161.38 Aligned_cols=143 Identities=14% Similarity=0.082 Sum_probs=90.4
Q ss_pred CCccccccccchHhhHH-HHHHHHHc-cCCcEEEEcCccCCccCCcchHHHHHH-----------Hh------CCcEEEE
Q 012520 176 LPTSMMTWMEESAKCSR-SIAEVLRE-VDADILSLQDVKAEEENDMKPLSDLAA-----------AL------GMKYVFA 236 (461)
Q Consensus 176 ~~~~~~~~~~~~~~~~~-~i~~~I~~-~~pDVV~LQEv~~~~~~~~~~l~~L~~-----------~~------g~~~~f~ 236 (461)
.+||+++.......+.. .++++|.+ .+||||+|||++....... .+..+.+ .+ ++.|.|.
T Consensus 8 ~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~-~~~r~~~~~g~~v~e~~w~lg~~~r~~~~yiy~ 86 (261)
T 1sr4_B 8 ATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAV-RTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYY 86 (261)
T ss_dssp EEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCE-ECSCCCCCSSSCCEEEEEESSCSSSCCEEEEEE
T ss_pred EEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccc-cchhhhcccCCchhhhhhhcccccCCCceEEEE
Confidence 34555443332212222 79999999 8899999999987521100 0001100 01 3445554
Q ss_pred ec---CCCCeeEEEEEeccceeeEEEeccC-CCCCceEEEEEEEcCCCcEEEEEEecCCCCCHHHHHHHHHHHHh---cC
Q 012520 237 ES---WAPEYGNAILSKWPIKRWKVQKIAD-DKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQ---SN 309 (461)
Q Consensus 237 ~~---~~~~~GvAIlSR~Pi~~~~~~~l~~-~~~~R~~i~a~i~l~gg~~v~v~ntHL~~~~~~~R~~Ql~~Ll~---~~ 309 (461)
.. ..+.+|+||+||+|+.+......+. ..++|+++.+++ .+ +.|+++|+.+....++..++..|.+ ..
T Consensus 87 ~~~d~~~g~~g~AIlSR~~~~~v~~l~~~~~~~~~R~~l~i~i--~g---~~f~s~Hl~~~~~~ea~~~v~~I~~~~~~~ 161 (261)
T 1sr4_B 87 SRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRI--GT---DVFFTVHALATGGSDAVSLIRNIFTTFNSS 161 (261)
T ss_dssp ECCCTTTSCSCEEEEESSCCSEEEEECCCCCSSCCCCEEEEEE--TT---EEEEEEECCTTTTTTHHHHHHHHHHHHHC-
T ss_pred EeecCCCCccceEEEEccchhceEEcCCCCCCCcCcceEEEEE--CC---eEEEEeCCCCCCCchHHHHHHHHHHHHHhc
Confidence 33 2468899999999886644334333 267999988854 33 9999999997543566677776654 22
Q ss_pred ----C---CCEEEEecCCCCCC
Q 012520 310 ----D---SPHILAGGLNSLDG 324 (461)
Q Consensus 310 ----~---~PvIL~GDFNs~~~ 324 (461)
+ .|+||+||||..++
T Consensus 162 ~~~~~~~~~~~ii~GDFN~~p~ 183 (261)
T 1sr4_B 162 SSPPERRVYSWMVVGDFNRAPA 183 (261)
T ss_dssp --CGGGGGCEEEEEEECSSCHH
T ss_pred ccCCcccCCcEEEEeeCCCChh
Confidence 4 69999999999744
No 28
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.65 E-value=1.3e-15 Score=150.16 Aligned_cols=228 Identities=9% Similarity=0.033 Sum_probs=121.7
Q ss_pred HHHccCCcE--EEEcCccCCccC---CcchHHHHHHHhC-CcEEE-EecCCCCeeEEEE--Eeccce----eeEEEeccC
Q 012520 197 VLREVDADI--LSLQDVKAEEEN---DMKPLSDLAAALG-MKYVF-AESWAPEYGNAIL--SKWPIK----RWKVQKIAD 263 (461)
Q Consensus 197 ~I~~~~pDV--V~LQEv~~~~~~---~~~~l~~L~~~~g-~~~~f-~~~~~~~~GvAIl--SR~Pi~----~~~~~~l~~ 263 (461)
.+.+.+||| |||||+...... .....+.|.+.++ +.|.. +....+..|++++ +|.++. ......+..
T Consensus 31 ~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~~~~~g 110 (282)
T 2imq_X 31 LNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVD 110 (282)
T ss_dssp CTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEEEEECS
T ss_pred ccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcCCCceEEEEeccCceeEEEEEEEEccccCccceeeeeccccc
Confidence 344689996 599999754210 0001233433332 34443 2212344565554 465532 222222332
Q ss_pred CCCCceEEEEEEEcCCCcEEEEEEecCCCC--CHHHHHHHHHHHHhc-----CCCCEEEEecCCCCCCCCChhhHHHHHH
Q 012520 264 DKDFRNVLKATVDVPWAGEVNVDSTQLDHL--NEKWRMKQICAIIQS-----NDSPHILAGGLNSLDGSDYSAERWMDIV 336 (461)
Q Consensus 264 ~~~~R~~i~a~i~l~gg~~v~v~ntHL~~~--~~~~R~~Ql~~Ll~~-----~~~PvIL~GDFNs~~~s~~~~~~~~~i~ 336 (461)
....++++.+++.+.+ ..+.|+|+||.+. ....|..|++.|++. ...|+|++||||...+.. ....+..+.
T Consensus 111 ~~g~kGav~~r~~~~~-~~~~fvn~HL~~~~~~~~~R~~~~~~I~~~~~~~~~~~~vi~~GDfN~r~~~~-~~~~~~~i~ 188 (282)
T 2imq_X 111 DQKKSGGIVTSFTIYN-KRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETN-ATHAKSLVD 188 (282)
T ss_dssp TTSCSEEEEEEEEETT-EEEEEEEEECCTTCCCTTSSSSSCCGGGCTTSSSSCCSEEEEEEECSCCBCSC-HHHHHHHHH
T ss_pred cccCCceEEEEEEECC-EEEEEEEECCCCCCchHHHHHHHHHHHHHhhhccCccceEEEecccccccCCC-HHHHHHHHh
Confidence 2346789999999876 8999999999974 235677777777653 245899999999887754 122222221
Q ss_pred H-hhhhcCCCChhHHHHHHHhcCCceeeecccCCCCceEeecCCcc-ccC-CCCCCCceEEEEECCCCCCceeeeEEEEc
Q 012520 337 K-YYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQN-VQG-TCKYGTRVDYILASPDSPYKFVPGSYSVI 413 (461)
Q Consensus 337 ~-~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~~tt~~~~g~~-~~~-t~~~~~RIDyIf~S~~~~~~~~v~s~~vi 413 (461)
. .+..+.. ..++..... .+.++.|....-..+.||.+.... ... ...+ .-+||||+++.....+.+..|.++
T Consensus 189 ~~~~~~l~~---~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~~~y~~~R~P-sw~DrIl~~~~~~~~~~~~~y~~~ 263 (282)
T 2imq_X 189 QNNIDGLMA---FDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATP-SWTDRALYKSGTGKTIQPLSYNSL 263 (282)
T ss_dssp TTCHHHHHT---TBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTSSCBCTTSCC-BCCEEEEEECSSSCCEEEEEEEEC
T ss_pred hccHHHHhh---hhHHHHhhc-cccccccccCCcCCCCCccccCCCccccccCCc-cccceEEEecCCCCceEeeEecCC
Confidence 1 0111100 001111111 111222322111222333332211 000 0111 126999999743233888899988
Q ss_pred CCCCCCCccceEEEEEec
Q 012520 414 SSKGTSDHHIVKVDVTKV 431 (461)
Q Consensus 414 ~~~~~SDH~PV~ad~~l~ 431 (461)
+....|||+||.++|.+.
T Consensus 264 ~~~~~SDH~PV~a~f~~~ 281 (282)
T 2imq_X 264 TNYKQTEHRPVLAKFRVT 281 (282)
T ss_dssp TTCCSSSSCCEEEEEEEE
T ss_pred CCCCCCCcCCeEEEEEEE
Confidence 666899999999999864
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.59 E-value=8.1e-14 Score=141.02 Aligned_cols=234 Identities=15% Similarity=-0.025 Sum_probs=128.7
Q ss_pred HHHHHHc---cCCcE--EEEcCccC-CccC-----------CcchHH-HHHHH--hCCcEEEEec-CCCCeeEEEEEecc
Q 012520 194 IAEVLRE---VDADI--LSLQDVKA-EEEN-----------DMKPLS-DLAAA--LGMKYVFAES-WAPEYGNAILSKWP 252 (461)
Q Consensus 194 i~~~I~~---~~pDV--V~LQEv~~-~~~~-----------~~~~l~-~L~~~--~g~~~~f~~~-~~~~~GvAIlSR~P 252 (461)
|.++|.. ..||| |||||+.. .... |...+. .|... .++.|..... .-++.+++|++|.+
T Consensus 43 l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~ 122 (347)
T 1i9z_A 43 LENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKES 122 (347)
T ss_dssp CHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGG
T ss_pred HHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehH
Confidence 5566653 68999 89999853 2110 111121 12211 1345553222 22466888999988
Q ss_pred ceee----EEEeccC----CCCCceEEEEEEEcCCCcEEEEEEecCCCCC--HHHHHHHHHHHHhc----------CCCC
Q 012520 253 IKRW----KVQKIAD----DKDFRNVLKATVDVPWAGEVNVDSTQLDHLN--EKWRMKQICAIIQS----------NDSP 312 (461)
Q Consensus 253 i~~~----~~~~l~~----~~~~R~~i~a~i~l~gg~~v~v~ntHL~~~~--~~~R~~Ql~~Ll~~----------~~~P 312 (461)
+... ....... ....++++.+.+.+.+ ..|.|+|+||.+.. ..+|..+...+++. ...+
T Consensus 123 ~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~-~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~ 201 (347)
T 1i9z_A 123 CLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYED-TGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDY 201 (347)
T ss_dssp GGGGEEEEEEEEEECCCC----CCEEEEEEEEETT-EEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSE
T ss_pred hhhhccceeeeeEeccCCCccCCCceEEEEEEECC-eEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCcc
Confidence 7532 1111111 1246789999999987 89999999999742 35788998888653 1368
Q ss_pred EEEEecCCCCCCCCChhhHHHHHHH-hhhhcCCCChhHHHHHHHhcCCceeeecccCCCCceEeecCCccccCCCCCCCc
Q 012520 313 HILAGGLNSLDGSDYSAERWMDIVK-YYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTR 391 (461)
Q Consensus 313 vIL~GDFNs~~~s~~~~~~~~~i~~-~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~~tt~~~~g~~~~~t~~~~~R 391 (461)
+|++||||...+.. ....+..+.. .+..+.. .+++...+.....++.|....-..+.||.+.............|
T Consensus 202 v~~~GDlNyRi~~~-~~~v~~~i~~~~~~~Ll~---~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~s~k~R 277 (347)
T 1i9z_A 202 VVWFGDFNYRISLT-YEEVVPCIAQGKLSYLFE---YDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHR 277 (347)
T ss_dssp EEEEEECCCCBSSC-HHHHHHHHHTTCHHHHHT---TBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCCSTTCC
T ss_pred EEEecccccccCCC-HHHHHHHHhhccHHHhhc---ccHHHHHHhcCCcccccccCCCCCCCCcccCCCCcccccccccc
Confidence 99999999776543 1222222211 0111100 01222222222222223222112223333322110000011355
Q ss_pred e----EEEEECCCCCCceeeeEEEEcCCCCCCCccceEEEEEecCccccc
Q 012520 392 V----DYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSENAFR 437 (461)
Q Consensus 392 I----DyIf~S~~~~~~~~v~s~~vi~~~~~SDH~PV~ad~~l~~e~~~~ 437 (461)
+ |+||+++. +.+..|...+ ...|||.||.+.|.+.-..+..
T Consensus 278 ~PsWcDRIL~~~~----l~~~~Y~~~~-~~~SDH~PV~a~f~~~v~~~~~ 322 (347)
T 1i9z_A 278 VPAWTDRILYRGE----LVPHSYQSVP-LYYSDHRPIYATYEANIVKVDR 322 (347)
T ss_dssp CCBCCEEEEEESS----CEEEEEEECC-CCSSSBCCEEEEEEEEEEEECH
T ss_pred CCcccceEEEeCC----EEEEEEEecC-ccCCCcCCceeEEEEEEecCCH
Confidence 5 99999984 7888999887 6899999999999887655443
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.56 E-value=1.1e-13 Score=140.39 Aligned_cols=225 Identities=12% Similarity=0.015 Sum_probs=130.6
Q ss_pred ccCCcE--EEEcCccCCccCCcchHHHHHHHhCCcEEEEecC-CCCeeEEEEEecccee----eEEEeccC----CCCCc
Q 012520 200 EVDADI--LSLQDVKAEEENDMKPLSDLAAALGMKYVFAESW-APEYGNAILSKWPIKR----WKVQKIAD----DKDFR 268 (461)
Q Consensus 200 ~~~pDV--V~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~-~~~~GvAIlSR~Pi~~----~~~~~l~~----~~~~R 268 (461)
+..||| |+|||+......| .+.|.+.+++.|.+.... -+..+++|++|.++.. .+...... ....+
T Consensus 55 ~~~pDI~viGlQEi~~~~~~W---~~~l~~~L~~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNK 131 (357)
T 2xsw_A 55 DYAQDLYVIGVQEGCSDRREW---ETRLQETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTK 131 (357)
T ss_dssp CSCCSEEEEEEESCCSCHHHH---HHHHHHHHCTTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEE
T ss_pred cCCCCEEEEEeeeccchHHHH---HHHHHHHhCCcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccc
Confidence 467996 8899997653222 345667778888764332 2568899999977631 12111111 12356
Q ss_pred eEEEEEEEcCCCcEEEEEEecCCCCC--HHHHHHHHHHHHhcC----------------------CCCEEEEecCCCCCC
Q 012520 269 NVLKATVDVPWAGEVNVDSTQLDHLN--EKWRMKQICAIIQSN----------------------DSPHILAGGLNSLDG 324 (461)
Q Consensus 269 ~~i~a~i~l~gg~~v~v~ntHL~~~~--~~~R~~Ql~~Ll~~~----------------------~~PvIL~GDFNs~~~ 324 (461)
+++.+.+.+.+ ..|.|+|+||.+.. ...|..+...|++.. ..++|++||||...+
T Consensus 132 Gav~vr~~~~~-t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~ 210 (357)
T 2xsw_A 132 GALGISFTFFG-TSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLS 210 (357)
T ss_dssp EEEEEEEEETT-EEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBS
T ss_pred cEEEEEEEECC-eEEEEEEEccCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccc
Confidence 78999999987 89999999999753 457888988886421 257999999999887
Q ss_pred CCChhhHHHHHH----HhhhhcCCCChhHHHHHHHh-cCCceeeecccCCCCceEeecCCcc-ccCCCCCCCce----EE
Q 012520 325 SDYSAERWMDIV----KYYEDIGKPTPRVEVMKLLK-GIEYVDSKEFAGECEPVVIIAKGQN-VQGTCKYGTRV----DY 394 (461)
Q Consensus 325 s~~~~~~~~~i~----~~~~~~~~~~p~~~v~~~L~-~~gl~Da~~~~~~~~~tt~~~~g~~-~~~t~~~~~RI----Dy 394 (461)
... ......+. +.+..+. ..+++...+. +.-|. -|....-.-+-||.++... ...+ ....|+ |+
T Consensus 211 ~~~-~~v~~~i~~~~~~~~~~Ll---~~DQL~~~~~~g~~F~-gf~E~~I~F~PTYKy~~~t~~Ydt-s~k~R~PaWcDR 284 (357)
T 2xsw_A 211 GGR-TVVDALLCQGLVVDVPALL---QHDQLIREMRKGSIFK-GFQEPDIHFLPSYKFDIGKDTYDS-TSKQRTPSYTDR 284 (357)
T ss_dssp SCH-HHHHHHHC---CCCHHHHH---TTBHHHHHHHHTSSST-TCBCCCCCSCCCBCBCTTSSSBCC-STTCCCCBCCEE
T ss_pred cch-HHHHHHHhhcchhhHHHHH---hcChhHHHHhcccccc-CccccCCCCCCCccccCCCccccc-cCCCCCCcccce
Confidence 642 11111110 0011110 0112222222 22221 1211111112233332211 0001 112444 99
Q ss_pred EEECCCCCCceeeeEEEEcCCCCCCCccceEEEEEecCcc
Q 012520 395 ILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSEN 434 (461)
Q Consensus 395 If~S~~~~~~~~v~s~~vi~~~~~SDH~PV~ad~~l~~e~ 434 (461)
||+.......+.+..|..+.+...|||.||.+.|.+.-..
T Consensus 285 IL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~ 324 (357)
T 2xsw_A 285 VLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVKVRP 324 (357)
T ss_dssp EEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEEECCC
T ss_pred EEEecCCCCceEEEEeEecccccCCCcCCceeEEEEEEec
Confidence 9998643334788899988767899999999999987544
No 31
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=99.19 E-value=6e-10 Score=110.82 Aligned_cols=226 Identities=14% Similarity=0.000 Sum_probs=118.7
Q ss_pred cCCcEE--EEcCccCCccCCcchH-HHHHHHhCCcEEEEe-cCCCCeeEEEEEeccce----eeEEEeccCC----CCCc
Q 012520 201 VDADIL--SLQDVKAEEENDMKPL-SDLAAALGMKYVFAE-SWAPEYGNAILSKWPIK----RWKVQKIADD----KDFR 268 (461)
Q Consensus 201 ~~pDVV--~LQEv~~~~~~~~~~l-~~L~~~~g~~~~f~~-~~~~~~GvAIlSR~Pi~----~~~~~~l~~~----~~~R 268 (461)
..|||+ +|||+......|...+ +.|.......|.... ..-....++|+.|.++. ..+......+ ...+
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNK 125 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNK 125 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CE
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCC
Confidence 347887 9999976533343333 234333333343221 11245678888886543 2222221111 2357
Q ss_pred eEEEEEEEcCCCcEEEEEEecCCCC--CHHHHHHHHHHHHhcC---------------CCCEEEEecCCCCCCCCChhhH
Q 012520 269 NVLKATVDVPWAGEVNVDSTQLDHL--NEKWRMKQICAIIQSN---------------DSPHILAGGLNSLDGSDYSAER 331 (461)
Q Consensus 269 ~~i~a~i~l~gg~~v~v~ntHL~~~--~~~~R~~Ql~~Ll~~~---------------~~PvIL~GDFNs~~~s~~~~~~ 331 (461)
+++.+.+.+.+ ..+.|+|+||.+. ....|..+...|++.. -..+|++||||...+... ...
T Consensus 126 GaV~ir~~~~~-ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi~~~~-~~v 203 (316)
T 4a9c_A 126 GAVGVSFMFNG-TSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDI-QEI 203 (316)
T ss_dssp EEEEEEEEETT-EEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCBSSCH-HHH
T ss_pred ceEEEEEEECC-cEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCcCCCH-HHH
Confidence 78899999887 8999999999874 3467888888886521 124899999998876431 111
Q ss_pred HHHHH-HhhhhcCCCChhHHHHHHHhcCCceeeecccCCCCceEeecCCcc--ccC-----CCCCCCc----eEEEEECC
Q 012520 332 WMDIV-KYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQN--VQG-----TCKYGTR----VDYILASP 399 (461)
Q Consensus 332 ~~~i~-~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~~tt~~~~g~~--~~~-----t~~~~~R----IDyIf~S~ 399 (461)
...+. +.+..+. ..+++...+.....+.-|....-.-+-||.++-.. ... +.....| -|.||+..
T Consensus 204 ~~~i~~~~~~~Ll---~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~ 280 (316)
T 4a9c_A 204 LNYISRKEFEPLL---RVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKS 280 (316)
T ss_dssp HHHHHTTCCHHHH---TTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEE
T ss_pred HHHHhcccHHHHh---ccChHHHHHhcCCcccccccCCcccCCCccccCCCcccccccccccccccccCCcccceEEecc
Confidence 11111 1111111 11233333322111111211100111222221110 000 0000112 49999986
Q ss_pred CCCCceeeeEEEEcCCCCCCCccceEEEEEec
Q 012520 400 DSPYKFVPGSYSVISSKGTSDHHIVKVDVTKV 431 (461)
Q Consensus 400 ~~~~~~~v~s~~vi~~~~~SDH~PV~ad~~l~ 431 (461)
.....+.+.+|....+...|||.||.+.|.+.
T Consensus 281 ~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~ 312 (316)
T 4a9c_A 281 YPETHIICNSYGCTDDIVTSDHSPVFGTFEVG 312 (316)
T ss_dssp CTTCCEEEEEEEECSSCCSSSSCCEEEEEEEE
T ss_pred CCCCceEEeeecccCCcCCCCcccEEEEEEEE
Confidence 43334677788877777899999999999864
No 32
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.15 E-value=1.5e-09 Score=107.74 Aligned_cols=235 Identities=12% Similarity=-0.014 Sum_probs=122.6
Q ss_pred HHHHHHc--cCCc--EEEEcCccCCccC-----C--cch-HHHHHHHhCC--cEEEEec-CCCCeeEEEEEeccc----e
Q 012520 194 IAEVLRE--VDAD--ILSLQDVKAEEEN-----D--MKP-LSDLAAALGM--KYVFAES-WAPEYGNAILSKWPI----K 254 (461)
Q Consensus 194 i~~~I~~--~~pD--VV~LQEv~~~~~~-----~--~~~-l~~L~~~~g~--~~~f~~~-~~~~~GvAIlSR~Pi----~ 254 (461)
+.++|.. ..|| ||+|||++..... . ... .+.+.+.++. .|..... .-.+.-+.|+.|..+ .
T Consensus 26 l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~ 105 (313)
T 3mtc_A 26 LRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYIS 105 (313)
T ss_dssp THHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEEEEEEETTEEEEEEEEGGGGGGEE
T ss_pred HHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEEEEEechhhhhhhhhhhhhhhhhcc
Confidence 4555554 6799 7999999643110 0 011 1234444432 2443211 112334456777443 3
Q ss_pred eeEEEeccCC----CCCceEEEEEEEcCCCcEEEEEEecCCCCC--HHHHHHHHHHHHhcC----------------CCC
Q 012520 255 RWKVQKIADD----KDFRNVLKATVDVPWAGEVNVDSTQLDHLN--EKWRMKQICAIIQSN----------------DSP 312 (461)
Q Consensus 255 ~~~~~~l~~~----~~~R~~i~a~i~l~gg~~v~v~ntHL~~~~--~~~R~~Ql~~Ll~~~----------------~~P 312 (461)
..+......+ ...++++.+.+.+.+ ..+.|+|+||.+.. ...|..+...|++.. ...
T Consensus 106 ~v~~~~v~tG~~g~~GNKGaV~ir~~~~~-ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~ 184 (313)
T 3mtc_A 106 EVEAETVGTGIMGRMGNKGGVAIRFQFHN-TSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDV 184 (313)
T ss_dssp EEEEEEEECSGGGTSTTSEEEEEEEEETT-EEEEEEEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSE
T ss_pred eeEeeeecccccccccCCceEEEEEEECC-cEEEEEeeccCCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCce
Confidence 3333332222 246779999999987 89999999999743 356778888886521 124
Q ss_pred EEEEecCCCCCCCCChhhHHHHHH-HhhhhcCCCChhHHHHHHHhcCCceeeecccCCCCceEeecCC-ccccCC-CCCC
Q 012520 313 HILAGGLNSLDGSDYSAERWMDIV-KYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKG-QNVQGT-CKYG 389 (461)
Q Consensus 313 vIL~GDFNs~~~s~~~~~~~~~i~-~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~~tt~~~~g-~~~~~t-~~~~ 389 (461)
+|++||||..............+. +.+..+. ..+++...+.....+.-|....-.-+-||.++- .....+ .+.+
T Consensus 185 vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll---~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydts~k~R 261 (313)
T 3mtc_A 185 ILWLGDLNYRIEELDVEKVKKLIEEKDFQMLY---AYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCR 261 (313)
T ss_dssp EEEEEECCCCBCSSCHHHHHHHHHTTCHHHHH---TTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCCSTTCC
T ss_pred EEEeccccccccCCCHHHHHHHHhcCCHHHHH---HhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccccccCEe
Confidence 899999998876322111111111 1111111 112333333322222222211101112232221 110111 0111
Q ss_pred --CceEEEEECCCCCCceeeeEEEEcCCCCCCCccceEEEEEecCccc
Q 012520 390 --TRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSENA 435 (461)
Q Consensus 390 --~RIDyIf~S~~~~~~~~v~s~~vi~~~~~SDH~PV~ad~~l~~e~~ 435 (461)
.=-|.||+.+.. +....|........|||.||.+.|.+...-+
T Consensus 262 ~PsWcDRIL~~~~~---i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~ 306 (313)
T 3mtc_A 262 APAWCDRILWKGKN---ITQLSYQSHMALKTSDHKPVSSVFDIGVRVV 306 (313)
T ss_dssp CCBCCEEEEEEESS---EEEEEEEECTTCCSSSSCCEEEEEEEEEEEE
T ss_pred cccccceEEEecCC---eEEEeeeeccCccCCCccCeEEEEEEEEEEe
Confidence 124999998652 7778888877678999999999999876543
Done!