BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012521
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 186 QKFFSSCPTLEELTIEGILHPRDNVQTINIIVQTLKRLSISVF 228
++ F P L+ L ++G P+ N+Q N + QTL RL I V
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSL-QTLGRLEILVL 483
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 363 FSKAHKLTPNTLQDIVFEDLVCVEPECAPNCLSSCVEVIEITNLKREDYEL 413
+ KA +L P + IV + V E C C + IE+ REDY +
Sbjct: 27 YDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRM 77
>pdb|2EG9|A Chain A, Crystal Structure Of The Truncated Extracellular Domain Of
Mouse Cd38
pdb|2EG9|B Chain B, Crystal Structure Of The Truncated Extracellular Domain Of
Mouse Cd38
Length = 253
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 321 NNNLPTFSNLISLELHIDSC------FGWKLLTPFLKRSP--SLKVLNLDFSKAHKLTPN 372
NN + F +IS + D+C L PF K S S++V +LD +K HKL
Sbjct: 151 NNPITMFWKVISQKFAEDACGVVQVMLDGSLREPFYKDSTFGSVEVFSLDPNKVHKLQAW 210
Query: 373 TLQDI 377
+ DI
Sbjct: 211 VMHDI 215
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 197 ELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQ-----GYVSKRIFEIRTPNLEYLSI 251
+LT EG+LH D + + +Q L+ +V Q V+ R + P Y S
Sbjct: 349 DLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPR-GYTSK 407
Query: 252 IANSLAYFVLDEIPFLKKAFVLVEF 276
IA L Y+ L+E+ L ++L EF
Sbjct: 408 IAGILHYYPLEEV--LTAEYLLEEF 430
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 197 ELTIEGILHPRDNVQTINIIVQTLKRLSISVFVMQ-----GYVSKRIFEIRTPNLEYLSI 251
+LT EG+LH D + + +Q L+ +V Q V+ R + P Y S
Sbjct: 349 DLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPR-GYTSK 407
Query: 252 IANSLAYFVLDEIPFLKKAFVLVEF 276
IA L Y+ L+E+ L ++L EF
Sbjct: 408 IAGILHYYPLEEV--LTAEYLLEEF 430
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,291,338
Number of Sequences: 62578
Number of extensions: 535989
Number of successful extensions: 1336
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 21
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)